Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 292 of 402
Found at i:27758174 original size:26 final size:26
Alignment explanation
Indices: 27758122--27758174 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
27758112 GTCGTCTTAG
* *
27758122 GCATACGAAGTTTATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTATAA
*
27758148 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGAAGTTCATT-CCATGTATAA
27758174 G
1 G
27758175 ATCAGATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTATAA
Found at i:27759420 original size:26 final size:26
Alignment explanation
Indices: 27759382--27759434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27759372 GTTGACTTAG
*
27759382 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27759408 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27759434 G
1 G
27759435 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27759911 original size:26 final size:26
Alignment explanation
Indices: 27759881--27759933 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27759871 GTTGGCTTAG
27759881 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
27759907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27759933 G
1 G
27759934 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27760094 original size:26 final size:26
Alignment explanation
Indices: 27760064--27760116 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27760054 GTTGACTTAG
27760064 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
27760090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27760116 G
1 G
27760117 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27760438 original size:26 final size:26
Alignment explanation
Indices: 27760409--27760459 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27760399 TTAACTTAAA
27760409 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACGGAGTTCATCCCCAGTCTAAT
*
27760435 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
27760460 GATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAT
Found at i:27761002 original size:26 final size:26
Alignment explanation
Indices: 27760973--27761025 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27760963 GTTGACTTTG
*
27760973 GCATACGGAGCTCA-TCCCTAGTCTAA
1 GCATACGAAGCTCATTCCC-AGTCTAA
*
27760999 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
27761025 G
1 G
27761026 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:27761541 original size:158 final size:158
Alignment explanation
Indices: 27761100--27761534 Score: 464
Period size: 158 Copynumber: 2.7 Consensus size: 158
27761090 CTAGCTTACG
* * * * *
27761100 CATTCTGCGTCTCCGACTGGCTAAGCGCCCGTATGCCCATTTCGTGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCGGCTGGCTAAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* ** *
27761165 AGTTCATTCCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGTCA-GACCGACAGCACGC
66 AGTTCATTCCA-GTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAG-CAGGACCGACAGCACGC
* **
27761228 AAAGAGGGATCGGGTCGATCTCCGACTTGCA
128 AAAGAGGGACCGCATCGATCTCCGACTTGCA
* * * * * * *
27761259 CATTTTGCCTCTTCGGCTGGCTCAGTGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAG
1 CATTCTGCCTCTCCGGCTGGCTAAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
** * * * * * *
27761324 AGTTTGTTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGTAA
66 AGTTCATT-CCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAA
* *
27761389 AG-GGGACCGCATCGGTC-CCTGGCTTGCA
130 AGAGGGACCGCATCGATCTCC-GACTTGCA
* * * *
27761417 CATTCTGCCTCTCCGGTTAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGGCTGGCTAAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * *
27761482 AGTTCATTCTCAGTCTAAGATCGGACTGAATCGAGGGTTGCGACAGCAGGACC
66 AGTTCATTC-CAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGACC
27761535 AGCAGCAGAA
Statistics
Matches: 222, Mismatches: 49, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 115 0.52
159 100 0.45
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CATTCTGCCTCTCCGGCTGGCTAAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAAA
GAGGGACCGCATCGATCTCCGACTTGCA
Found at i:27762531 original size:26 final size:26
Alignment explanation
Indices: 27762495--27762547 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27762485 GTTGACTTAG
*
27762495 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
27762521 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
27762547 G
1 G
27762548 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:27763025 original size:26 final size:26
Alignment explanation
Indices: 27762996--27763048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27762986 GTTGGCTTAG
27762996 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27763022 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27763048 G
1 G
27763049 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27764428 original size:26 final size:26
Alignment explanation
Indices: 27764391--27764443 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27764381 GTTGCCTTAG
27764391 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27764417 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
27764443 G
1 G
27764444 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27765335 original size:26 final size:27
Alignment explanation
Indices: 27765297--27765350 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
27765287 GTTGACTTAG
*
27765297 GCATACGGAGTTCAT-CCCCAGTCTAA
1 GCATACAGAGTTCATCCCCCAGTCTAA
*
27765323 GCATACAGTGTTCATCCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCCAGTCTAA
27765350 G
1 G
27765351 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (27 bp):
GCATACAGAGTTCATCCCCCAGTCTAA
Found at i:27765664 original size:158 final size:158
Alignment explanation
Indices: 27765323--27765664 Score: 368
Period size: 158 Copynumber: 2.2 Consensus size: 158
27765313 CCCAGTCTAA
* * * * *
27765323 GCATACAGTGTTCATCCCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAATAGGATCGAC
1 GCATACAGAGTTCAT-TCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCAGCAATAGGACCGAC
* * * * * *
27765388 AGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCAGCCGGTTAAGCGC
65 AGCACACAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCAGCCGGTCAAGCGC
* *
27765453 CCACACGTTCGTTTCATGGGTTGGCTTAG
130 CCACACGCTCGTTTCATGGGTTGACTTAG
** * * * *
27765482 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTAGCAATGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGCAGCAATAGGACCGA
* ** * **
27765545 CAGCACACCGAGGTTACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCC-GATTGGCTCAA-
64 CAGCACACAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCAG-CCGG-TCAAG
* *
27765608 TGCCCATACGCTCGTTTCATGGGTTGACTTAG
127 CGCCCACACGCTCGTTTCATGGGTTGACTTAG
27765640 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
27765665 CGATAGGACC
Statistics
Matches: 149, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.03
158 124 0.83
159 21 0.14
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCAGCAATAGGACCGACA
GCACACAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCAGCCGGTCAAGCGCC
CACACGCTCGTTTCATGGGTTGACTTAG
Found at i:27765834 original size:26 final size:26
Alignment explanation
Indices: 27765798--27765850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27765788 GTTGGCTTAG
*
27765798 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
27765824 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
27765850 G
1 G
27765851 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:27766521 original size:159 final size:160
Alignment explanation
Indices: 27766358--27766708 Score: 390
Period size: 159 Copynumber: 2.2 Consensus size: 160
27766348 GTGGATTGGT
** * *
27766358 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTAGCAGCGGGA
1 TTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGATCGGACT-GAGGGTTGTAGCAGCAGGA
* * * *** * * * *
27766421 TCGGCAGCACGCAGAGGGGGA-TCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGT
65 TCGACAACACACAG-GGGGGACT-GAGCCAATCCCCGGATTGCGCATTATGCATCTCCGGTCGGC
27766485 TCAGCGCCCGCACGCTC-GTTTCATGGGTTAAC
128 TCAGCGCCCGCACGCTCAGTTTCATGGGTTAAC
* * *
27766517 TTAGGCATACATAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGCAGGA
1 TTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCAGATCGGACTGAGGGTTGTAGCAGCAGGA
* * * * * *
27766580 TTGACAACACACAGGGGGGACTGGGCCAATCCTCGGATTGTGCATTCTGCATCTCCGGTCGGCTG
65 TCGACAACACACAGGGGGGACTGAGCCAATCCCCGGATTGCGCATTATGCATCTCCGGTCGGCTC
* **
27766645 AGCGCCCGCACGCTCATTTTCATGGGTTGGC
130 AGCGCCCGCACGCTCAGTTTCATGGGTTAAC
27766676 TTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 TTAGGCATACAGAGTTCATTCCATGTCTAAGCA
27766709 TACGGAGTTC
Statistics
Matches: 158, Mismatches: 27, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
158 58 0.37
159 95 0.60
160 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (160 bp):
TTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGATCGGACTGAGGGTTGTAGCAGCAGGAT
CGACAACACACAGGGGGGACTGAGCCAATCCCCGGATTGCGCATTATGCATCTCCGGTCGGCTCA
GCGCCCGCACGCTCAGTTTCATGGGTTAAC
Found at i:27766710 original size:26 final size:26
Alignment explanation
Indices: 27766680--27766732 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27766670 GTTGGCTTAG
27766680 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
27766706 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
27766732 G
1 G
27766733 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:27767441 original size:26 final size:26
Alignment explanation
Indices: 27767405--27767454 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
27767395 GACTTAGGTG
*
27767405 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGAAGTTCATCCCCAGTCTAAGCA
*
27767431 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
27767455 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCA
Found at i:27767784 original size:26 final size:26
Alignment explanation
Indices: 27767754--27767806 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27767744 GTTAGCTTAG
* **
27767754 GCATACAGAGTTGATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
27767780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27767806 G
1 G
27767807 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27768443 original size:26 final size:26
Alignment explanation
Indices: 27768410--27768465 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
27768400 TGGGTTGACT
*
27768410 TAAGCATATGAAGTTCA-TCCCTAGTC
1 TAAGCATACGAAGTTCATTCCC-AGTC
27768436 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
27768462 TAAG
1 TAAG
27768466 ATCGAACGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:27768802 original size:159 final size:157
Alignment explanation
Indices: 27768439--27768940 Score: 475
Period size: 158 Copynumber: 3.2 Consensus size: 157
27768429 CCTAGTCTAA
* * * * * *
27768439 GCATACGAAGTTCATTCCCA-GTCTAAGATC-GAACGAGACCGAGGGTTACGACAGTAGCATC-A
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ACCAGACC-AGGGTTATGGCAGCAGGATCGA
* * * * *
27768501 GCAGCACACA-AGGGGGATCGGGCCGATCCCCCGCTTGCGCATTCTGCCTCTTCGACCAGCTGAG
63 -CAGCACACAGAGGGGGGTCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* *
27768565 CACCCGCACGCCCGTTTCGTGGGTTGACTCAG
126 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * *
27768597 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACAGAGGGTTATGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGAC-CAGGGTTATGGCAGCAGGATCGAC
* * * *
27768661 AGCCCACAGAGGGGGGTCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAATCGGCTCAGCA
64 AGCACACAGAGGGGGGTCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
* *
27768726 CCCGCATGCTCGTTTTGTGGGTTGACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
27768756 GCATACGGAGTTCATTGCCA-GTCTAAGATCAGACCAGACCATGGGTTACT-GCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCA-GGGTTA-TGGCAGCAGGATCGA
* * * * * * * * * *
27768819 CA--ACAC-GCAGGGGAGACTGGGCCATTTCTCGACTTACGCATTCTGGCTCTCCGGTCGACTGA
63 CAGCACACAG-AGGGGGGTC-GGGCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* *
27768881 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
125 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
27768914 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
27768941 CATATGGAGT
Statistics
Matches: 280, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 18 0.06
158 134 0.48
159 122 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCAGGGTTATGGCAGCAGGATCGACAG
CACACAGAGGGGGGTCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:27768950 original size:26 final size:26
Alignment explanation
Indices: 27768914--27768966 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27768904 GTTGGCTTAG
27768914 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27768940 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27768966 G
1 G
27768967 ATTGGATAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27770047 original size:26 final size:26
Alignment explanation
Indices: 27769999--27770048 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
27769989 GTTAACTTAG
*
27769999 GCATACGGAGTTCATCCGTAGTCTAA
1 GCATACGGAGTTCATCCGCAGTCTAA
27770025 GCATACGGAGTTCATTCC-CAGTCT
1 GCATACGGAGTTCA-TCCGCAGTCT
27770049 CAGATCAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCGCAGTCTAA
Found at i:27770386 original size:159 final size:158
Alignment explanation
Indices: 27770025--27770516 Score: 354
Period size: 159 Copynumber: 3.1 Consensus size: 158
27770015 CGTAGTCTAA
* * * * * * * *
27770025 GCATACGGAGTTCATTCCCAGTCTCAGATCAGATTGGACCGAGGGTTGTGGCAACAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
** * ** * * * * * * ** *
27770090 GCATAC-AGAGGGGAT-GGACCGATCCTTGGCTTGCGCTTTCTGCCTCTACGACCGGTTGAGCAC
66 GCACGCAAG-GGGGATCGGATCGATCCCCGACTTGCACATTATGCCTCTCCGATCGACTAAGCAC
* * * * * *
27770153 CCGTACGCCCGTTTCGTGGCTT-AGCTTAG
130 TCGAACGCTCATTTCATGGGTTGA-CTTAG
* * * ** * * * * *
27770182 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGCGGAACTAAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-ATCTAAGATCAAATCGGATC-GAGGGTTGCGGCAGCAGGATC-G
* ** *
27770244 ACAGCACGCAGAGGGGGA-CTGGGTCGATCCCCGACTTGCGTATTATGCCTCTCCGATCGGCTCA
63 ACAGCACGCA-AGGGGGATC-GGATCGATCCCCGACTTGCACATTATGCCTCTCCGATCGACT-A
*
27770308 ATGC-CT-GAACGCTCGTTTCATGGGTTGACTTAG
125 A-GCACTCGAACGCTCATTTCATGGGTTGACTTAG
* * *
27770341 GCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGATCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
27770406 GCACGTAAGGGGGATCGGATCGATCCCTGACTTGCACATTTTGCCTCTCCGGTCGACTGAGCACT
66 GCACGCAAGGGGGATCGGATCGATCCCCGACTTGCACATTATGCCTCTCCGATCGACTAAGCACT
* * *
27770471 CGCACGCTCATTTCGTGGGTTGGCTTAG
131 CGAACGCTCATTTCATGGGTTGACTTAG
27770499 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
27770517 ATGTCTAAGC
Statistics
Matches: 262, Mismatches: 57, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
156 13 0.05
157 46 0.18
158 88 0.34
159 98 0.37
160 15 0.06
161 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGATCGGATCGATCCCCGACTTGCACATTATGCCTCTCCGATCGACTAAGCACT
CGAACGCTCATTTCATGGGTTGACTTAG
Found at i:27770552 original size:158 final size:158
Alignment explanation
Indices: 27770146--27770558 Score: 388
Period size: 158 Copynumber: 2.6 Consensus size: 158
27770136 TACGACCGGT
* * * * * * *
27770146 TGAGCACCCGTACGCCCGTTTCGTGGCTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACC
1 TGAGCACTCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * * * *
27770211 CCAGCGGAACTAAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGACTGGGTCGATCCCC
66 CAAGCGGATC-GAGGGTTGTGGTAGCAGGACTGACAGCACGCAGAGGGGGACTGGATCGATCCCC
** *
27770276 GACTTGCGTATTATGCCTCTCCGATCGGC
130 GACTTGCACATTATGCCTCTCCGATCGAC
* * * *
27770305 TCAATGC-CT-GAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAA
1 T-GA-GCACTCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* * * * * * *
27770367 GATCAAATCGGATCGAGGGTTGCGGTAGTAGGA-TCGATAGCACGTA-AGGGGGA-TCGGATCGA
63 G-CCCAAGCGGATCGAGGGTTGTGGTAGCAGGACT-GACAGCACGCAGAGGGGGACT-GGATCGA
* * *
27770429 TCCCTGACTTGCACATTTTGCCTCTCCGGTCGAC
125 TCCCCGACTTGCACATTATGCCTCTCCGATCGAC
* *
27770463 TGAGCACTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
1 TGAGCACTCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * *
27770528 CTAGCCAGATCGAGGGTTATGGTAGCTGGAC
66 CAAG-CGGATCGAGGGTTGTGGTAGCAGGAC
27770559 CGGTACCGGG
Statistics
Matches: 198, Mismatches: 45, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 9 0.05
158 108 0.55
159 65 0.33
160 12 0.06
161 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
TGAGCACTCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CAAGCGGATCGAGGGTTGTGGTAGCAGGACTGACAGCACGCAGAGGGGGACTGGATCGATCCCCG
ACTTGCACATTATGCCTCTCCGATCGAC
Found at i:27770711 original size:26 final size:26
Alignment explanation
Indices: 27770682--27770734 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27770672 GTTGACTTAG
*
27770682 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
* * *
27770708 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
27770734 G
1 G
27770735 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:27770996 original size:159 final size:158
Alignment explanation
Indices: 27770757--27771051 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 158
27770747 CGAGGGTTAC
* * *
27770757 GGTAACAGGATCGACAGCATGCAGGGGGGACCGGACCGATCCCCGACTTACGCATTCTGCCTCTC
1 GGTAACAGGACCGACAGCACGCAGGAGGGACCGGACCGATCCCCGACTTACGCATTCTGCCTCTC
* ** * * **
27770822 CGGCCAGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTACGCATAGGGAGTTCATT-CCAT
66 CGACCAGCTGAGCGCCCACACACCCATTTCATGGGTTGGCTTACGCATACAGAGTTCATTCCCA-
27770886 GTCTAAGCCCCAGCGAAACTAAGGGTTGT
130 GTCTAAGCCCCAGCGAAACTAAGGGTTGT
* * * * *
27770915 GGTAGCAGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCT
1 GGTAACAGGACCGACAGCACGCAG-GAGGGACCGGACCGATCCCCGACTTACGCATTCTGCCTCT
* *** *
27770980 CCGA-CTGACTGAGCGCCCACACACTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCC
65 CCGACCAG-CTGAGCGCCCACACACCCATTTCATGGGTTGGCTTACGCATACAGAGTTCATTCCC
27771044 AGTCTAAG
129 AGTCTAAG
27771052 AGTTTGAGCC
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
158 22 0.19
159 89 0.78
160 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
GGTAACAGGACCGACAGCACGCAGGAGGGACCGGACCGATCCCCGACTTACGCATTCTGCCTCTC
CGACCAGCTGAGCGCCCACACACCCATTTCATGGGTTGGCTTACGCATACAGAGTTCATTCCCAG
TCTAAGCCCCAGCGAAACTAAGGGTTGT
Found at i:27773726 original size:26 final size:26
Alignment explanation
Indices: 27773688--27773740 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27773678 GGCTCAAAAT
27773688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27773714 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27773740 C
1 C
27773741 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27774004 original size:159 final size:156
Alignment explanation
Indices: 27773713--27774141 Score: 441
Period size: 159 Copynumber: 2.7 Consensus size: 156
27773703 AACTCCGTAT
* *
27773713 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCTAAGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACC-AAGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
27773778 CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGTTATCGATC
64 CCAGCCGAAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCAGTCCCCCCCTGCATGCTACCGATC
* ** * *
27773843 CTGCTACCGTAACCCTCAATTCAGTCT-GA
128 CTGCCACCACAACCCTC-AGTCAGGCTGGA
* * * * *
27773872 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAAC-CAAGAAATGAGCGTGCGGGCGCTCA
* * * *
27773936 GCCAGCCGAAGAGGCATAATGCGCAAGCAGAGGATCGGCCCAGTCCCCCTCTGCATGCTGCCGGT
63 GCCAGCCGAAGAGGCAGAATGCGCAAGCAG-GGATCGGCCCAGTCCCCCCCTGCATGCTACCGAT
* * *
27774001 CCTGCCGCCACAACCCTCAGTCTGGCTGGG
127 CCTGCCACCACAACCCTCAGTCAGGCTGGA
* *
27774031 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACA-AAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAA-CCA-AGAAATGAGCGTGCGGGCGCTCA
* * *
27774095 GCCAGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCCAATCCC
63 GCCAGCCGAAGAGGCAGAATGCGCAAGC-AGGGATCGGCCCAGTCCC
27774142 TCTTACGCGC
Statistics
Matches: 222, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
158 9 0.04
159 207 0.93
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCAAGAAATGAGCGTGCGGGCGCTCAGCC
AGCCGAAGAGGCAGAATGCGCAAGCAGGGATCGGCCCAGTCCCCCCCTGCATGCTACCGATCCTG
CCACCACAACCCTCAGTCAGGCTGGA
Found at i:27774280 original size:26 final size:26
Alignment explanation
Indices: 27774190--27774287 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
27774180 TTGATTCAAT
*
27774190 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
27774216 CTTAAACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
27774242 CCTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
27774268 CTTAGCCAT-GGAATGAACTC
1 CTTAGAC-TGGGAATGAACTC
27774288 CATATGCCTA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 62 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27774624 original size:159 final size:158
Alignment explanation
Indices: 27774274--27774716 Score: 461
Period size: 159 Copynumber: 2.8 Consensus size: 158
27774264 TATGCTTAGC
* *
27774274 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAGTCGGCCG
1 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCG
* * **
27774339 GAGAGGCTGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTGTCGATCCTGCTGCC
66 AAAAGGCTGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTACCGATCCTGCTGCC
* *
27774404 ACAACCCTCAGTCCGGTCTGATCTTATA
131 ACAACCCTCAGTCCGGTCTGAGCTTACA
** * * * * * *
27774432 C-TAGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGTGTGCGGGTGCTGAGCCGGTC
1 CAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCC
*
27774496 GAAAAGGCAT-AATGCGCAAGTCGGGGA-CTGGCCC-GATCCCCCTCTGCGTGCTACCGAT-CTC
65 GAAAAGGC-TGAATGCGCAAGCCGGGGATC-GGCCCAG-TCCCCCT-TGCGTGCTACCGATCCT-
* *
27774557 GCTGCCACAACCCTCGGTCCGG-CTGGGGCTTACA
125 GCTGCCACAACCCTCAGTCCGGTCT-GAGCTTACA
* * * * *
27774591 CATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCAGTC-
1 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCG
* * * * ** **
27774655 AGAGAGG-TAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTTTTGTGCTGTCGATCCTGC
66 A-AAAGGCT-GAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTACCGATCCTGC
27774717 ACCCGCAACC
Statistics
Matches: 234, Mismatches: 37, Indels: 28
0.78 0.12 0.09
Matches are distributed among these distances:
157 4 0.02
158 103 0.44
159 124 0.53
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCG
AAAAGGCTGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTACCGATCCTGCTGCC
ACAACCCTCAGTCCGGTCTGAGCTTACA
Found at i:27774747 original size:553 final size:554
Alignment explanation
Indices: 27773690--27774798 Score: 1435
Period size: 553 Copynumber: 2.0 Consensus size: 554
27773680 CTCAAAATCT
** * *
27773690 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCTAA
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAA
** * *
27773755 GAAATGAGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGG
66 GAAATGAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAG
* ** * *
27773820 TCCCCCCCTGCGTGTTATCGATCCTGCTACCGTAACCCTCAATTCAGTCTGATCTTAGACTGGGA
131 TCCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTCAATCCAGTCTGATCTTAGACTAGGA
* ** *
27773885 ATGAACTCCGTATGCATAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGG
196 ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAAAGG
* *
27773950 CATAATGCGCAAGCAGAGGATCGGCCCAGTCCCCCTCTGCATGCTGCCGGTCCTGCCGCCACAAC
261 CATAATGCGCAAGCAGAGGATCGGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCCGCCACAAC
* * * *
27774015 CCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGG
326 CCTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAATGG
* * *
27774080 GCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCCAATCCCTCT
391 GCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCGAGGGATCGACCCAATCCCCCT
* *** ** *
27774145 TACGCGCTGTCGATCTTGCTGTCGCAACCCTCGGTTTGATTCAATCTTAGACCGGGAATGAAC-T
456 TACGCGCTGTCGATCCTGCACCCGCAACCCTCGGTAAGATCCAATCTTAGACCGGGAATGAACTT
* *
27774209 CTGTATGCTTAAACTGGGGATGAACTCTGTATGCC
521 C-GTATGCTTAAACTGAGGATGAACTCCGTATGCC
* * *
27774244 TAGACTGGGAATGAACTCTGTATGCTTAGCCATGGAATGAACTCCATATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAA
* * * * *
27774309 GAAATGAGCATGCGGGTGCTCAGTCGGCCGGAGAGGCTGAATGCGCAAGCCGGGGATCGGCCCAG
66 GAAATGAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAG
* * * * * *
27774374 T-CCCCCTTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTATACTAGGA
131 TCCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTCAATCCAGTCTGATCTTAGACTAGGA
* * * * * *
27774438 ATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGTGTGCGGGTGCTGAGCCGGTCGAAAAGG
196 ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAAAGG
* * *
27774503 CATAATGCGCAAGTC-GGGGA-CTGGCCC-GATCCCCCTCTGCGTGCTACCGAT-CTCGCTGCCA
261 CATAATGCGCAAG-CAGAGGATC-GGCCCAG-TCCCCCTCTGCATGCTACCGATCCT-GCCGCCA
* *
27774564 CAACCCTCGGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAA
322 CAACCCTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAA
* * * **
27774629 ATGGGCGTGCGGGTGCTCAGCCAGTCAGAGAGGTAGAATGCGCAAGCCGA-GGATC-AGCCCGGT
387 ATGGGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAG-CGAGGGATCGA-CCCAAT
** * * **
27774692 CCCCCTTTTGTGCTGTCGATCCTGCACCCGCAACCCTCGGTCAAG-TCCGATCTTAGATTGGGAA
450 CCCCCTTACGCGCTGTCGATCCTGCACCCGCAACCCTCGGT-AAGATCCAATCTTAGACCGGGAA
*
27774756 TGAACTTCGTATGCTTAGACTGAGGATGAACTCCGTATGCC
514 TGAACTTCGTATGCTTAAACTGAGGATGAACTCCGTATGCC
27774797 TA
1 TA
27774799 AATCAACACA
Statistics
Matches: 475, Mismatches: 72, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
552 5 0.01
553 349 0.73
554 121 0.25
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (554 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAA
GAAATGAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAG
TCCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTCAATCCAGTCTGATCTTAGACTAGGA
ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAAAGG
CATAATGCGCAAGCAGAGGATCGGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCCGCCACAAC
CCTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAATGG
GCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCGAGGGATCGACCCAATCCCCCT
TACGCGCTGTCGATCCTGCACCCGCAACCCTCGGTAAGATCCAATCTTAGACCGGGAATGAACTT
CGTATGCTTAAACTGAGGATGAACTCCGTATGCC
Found at i:27775844 original size:159 final size:158
Alignment explanation
Indices: 27775487--27776002 Score: 394
Period size: 158 Copynumber: 3.3 Consensus size: 158
27775477 AACTCCGTAT
* * * * * ** *
27775487 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAA
* * * * * * * * * *
27775552 TCGGCC-AGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTATGTGCTATCA-AT
66 CCAGCCGA-AGAGGCAGAATGCGCAAACCGAGGATCAGCCCGGTCCCCCCGACGTACT-GCAGAT
** * * * ***
27775615 CCTGCTACCGCAACCCTCAGTCC-GATCCCA
129 CCCACTACCACAACCCTCGGTCCAGCT-GGG
* * * * ** *
27775645 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCA
* * * * *
27775709 GCCAGCCGAAGAGGCATAATGCGCAAACCGAGGATTAGCCTGGTCCCCCTCTACGTACTGCTAG-
65 ACCAGCCGAAGAGGCAGAATGCGCAAACCGAGGATCAGCCCGGTCCCCC-CGACGTACTGC-AGA
* **
27775773 TCCCGCTACCACAACCCTCGGTCTGGCTGGG
128 TCCCACTACCACAACCCTCGGTCCAGCTGGG
* * * * * *
27775804 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAA
* * * * * * * * * *
27775869 CCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCTCCGATGTGCTGCCGATCC
66 CCAGCCGAAGAGGCAGAATGCGCAAACCGAGGATCAGCCCGGTCCCCCCGACGTACTGCAGATCC
* * *
27775934 CACTGCCACAACCCTTGGTCCAGCTGTG
131 CACTACCACAACCCTCGGTCCAGCTGGG
*
27775962 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
27776003 TTAAACGGGC
Statistics
Matches: 287, Mismatches: 63, Indels: 16
0.78 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 165 0.57
159 117 0.41
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAA
CCAGCCGAAGAGGCAGAATGCGCAAACCGAGGATCAGCCCGGTCCCCCCGACGTACTGCAGATCC
CACTACCACAACCCTCGGTCCAGCTGGG
Found at i:27775987 original size:158 final size:158
Alignment explanation
Indices: 27775487--27776092 Score: 524
Period size: 159 Copynumber: 3.8 Consensus size: 158
27775477 AACTCCGTAT
* * *
27775487 GCTTAGACGTGGAATGAACTCCGTATGCCTAA-GCTAACCTACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGC-AACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * ** *
27775551 GTCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTATGTGCTATCAATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCGATGTGCTGCCGATC
** * * * **
27775616 CTGCTACCGCAACCCTCAGTCCGATCCCAT-
130 CCACTACCACAACCCTCGGTCC-A-GCTGTG
* * * * *
27775646 -CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * * * * *
27775709 GCCAGCCGAAGAGGCATAATGCGCAAACCGAGGATTAGCCTGGTCCCCCTCTACGTACTG-CTAG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCC-CGATGTGCTGCCGA-
* ** *
27775773 TCCCGCTACCACAACCCTCGGTCTGGCTGGG
128 TCCCACTACCACAACCCTCGGTCCAGCTGTG
* * * * ** *
27775804 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
27775869 CCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCTCCGATGTGCTGCCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCGATGTGCTGCCGATCC
* *
27775934 CACTGCCACAACCCTTGGTCCAGCTGTG
131 CACTACCACAACCCTCGGTCCAGCTGTG
* * ** * *
27775962 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATTAAACGGGCATGCAGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGAGCGTGC-GGGTGCTCA
* * * * *
27776027 GTCGACTGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCAT-T-CTGCCGA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCC-G-ATGTGCTGCCGA
27776090 TCC
128 TCC
27776093 TACTGTCGCA
Statistics
Matches: 359, Mismatches: 77, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 175 0.49
159 177 0.49
160 3 0.01
161 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCGATGTGCTGCCGATCC
CACTACCACAACCCTCGGTCCAGCTGTG
Found at i:27776158 original size:26 final size:26
Alignment explanation
Indices: 27776122--27776174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27776112 ACGGTCTGAT
27776122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
27776148 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27776174 C
1 C
27776175 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27776527 original size:26 final size:26
Alignment explanation
Indices: 27776489--27776541 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27776479 CCGATGCAAT
*
27776489 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27776515 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27776541 C
1 C
27776542 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27776816 original size:367 final size:367
Alignment explanation
Indices: 27776120--27776818 Score: 755
Period size: 367 Copynumber: 1.9 Consensus size: 367
27776110 ATACGGTCTG
* * * *
27776120 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * *
27776185 CAACGAAACGAGCATGCGGGCGCTTAGTCAGCCAGAGAGGCATAATGCTCAAACTGCAGATCAGC
66 CAACAAAACAAGCATGCGGGCACTCAGGCAGCCAGAAAGGCAGAATGCACAAACCGCAGATCAGC
* * *
27776250 CCGATCCTCCTCTGCGTGCTGTCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCTGACT
131 CCGATCCTCCTCTACATGCTGTCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCGGACT
* * * * * * ** * * **
27776315 GGGGCTTAGACATGGAATGATCTCTGTATGCCTAAGCCAACCGATGAAATGATTGTGCAGGTGCT
196 CGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTACAGGCACT
** * * * ** *
27776380 CAGTTGGCTAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTGTATACTGTTGA
261 CAGCAGGCTAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATACTGTCGA
27776445 TCCTGCTGCTAGTCTTGCTGCCACAACCCTCGGTCCGATGCA
326 TCCTGCTGCTAGTCTTGCTGCCACAACCCTCGGTCCGATGCA
*
27776487 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
27776551 CCCACAAAACAAGCGTGCGGGCACTCAGGCGGCCAGAAAGGCAGAATGCACAAGCCGGGGATCAG
65 CCAACAAAACAAGCATGCGGGCACTCAGGCAGCCAGAAAGGCAGAATGCACAAACCGCAGATCAG
* ** * *
27776616 CCCGGTCTCTCC-CTACATGCTGTCGATCTTGCTG-CTGGTCCTGCTGCCGCAACCCT-TGTCCC
130 CCCGATC-CTCCTCTACATGCTGTCGATCCCGCTGTC-GGTCCTGCTGCCACAACCCTCGGT--C
* * **
27776678 GGTC-CGATCTTAGAC-TGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTATG
191 GGACTCGAGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTACA
* * * * * * *
27776741 GGCACTCAGCAGG-TCCGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGATCCCTCCTACGTG
255 GGCACTCAGCAGGCT-AGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATA
27776805 CTGTCGATCCTGCT
319 CTGTCGATCCTGCT
27776819 ACAGCAACCT
Statistics
Matches: 266, Mismatches: 59, Indels: 14
0.78 0.17 0.04
Matches are distributed among these distances:
366 6 0.02
367 252 0.95
368 8 0.03
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (367 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAAC
CAACAAAACAAGCATGCGGGCACTCAGGCAGCCAGAAAGGCAGAATGCACAAACCGCAGATCAGC
CCGATCCTCCTCTACATGCTGTCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCGGACT
CGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTACAGGCACT
CAGCAGGCTAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATACTGTCGA
TCCTGCTGCTAGTCTTGCTGCCACAACCCTCGGTCCGATGCA
Found at i:27776933 original size:158 final size:157
Alignment explanation
Indices: 27776678--27777187 Score: 496
Period size: 158 Copynumber: 3.2 Consensus size: 157
27776668 CCCTTGTCCC
* * * * ** *
27776678 GGTCCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTATGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGG
* * * * *
27776743 CACTCAGCAGGTCC-GAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGATCCCTCCTACGTGCT
66 CACTGAGC-CGACCGGAGAGGCAGAATGCGCAAG-CGGGGATTGGCCCGGTCCCCCCTAC-TGCT
*
27776807 GTCGATCCTGCTACAGCAACCTTC-ATTCT
128 GTCGATCCTGCTACAGCAACCCTCGATTCT
*
27776836 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGG
* * * ** *
27776901 CACTGAGCCGACCGGAGAGGCATAATGTGCAAGCTGGGGATTAGCTTGGTCCCCCTCTATCTACT
66 CACTGAGCCGACCGGAGAGGCAGAATGCGCAAGC-GGGGATTGGCCCGGTCCCCC-CTA-CTGCT
* * * * *
27776966 GCCGGTCCTGCTGCCA-TAACCCTCGGTT-T
128 GTCGATCCTGCT-ACAGCAACCCTCGATTCT
* * * *
27776995 GG-CTGGGTCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCG
1 GGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACG
* ** *
27777058 GGCGCTTG-GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTACATG
64 GGCAC-TGAGCCGACCGGAGAGGCAGAATGCGCAAG-CGGGGATTGGCCCGGTCCCCCCTAC-TG
* * *
27777122 CTATCGATCCTACTACCGCAACCCTCGATTC-
126 CTGTCGATCCTGCTACAGCAACCCTCGATTCT
** * *
27777153 AATCTGATCTTAGACTGGGAGTGAACTCTGTATGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
27777188 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 54, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
157 7 0.02
158 146 0.52
159 121 0.43
160 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (157 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGG
CACTGAGCCGACCGGAGAGGCAGAATGCGCAAGCGGGGATTGGCCCGGTCCCCCCTACTGCTGTC
GATCCTGCTACAGCAACCCTCGATTCT
Found at i:27777212 original size:26 final size:26
Alignment explanation
Indices: 27777161--27777213 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27777151 TCAATCTGAT
**
27777161 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAGTGAACTCCATATG
27777187 CTTAGACTGGG-GATGAACTCCATATG
1 CTTAGACTGGGAG-TGAACTCCATATG
27777213 C
1 C
27777214 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCCATATG
Found at i:27780204 original size:12 final size:12
Alignment explanation
Indices: 27780187--27780218 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
27780177 GATGCCCGCA
27780187 AAGCTACCTAGC
1 AAGCTACCTAGC
27780199 AAGCTACCTAGC
1 AAGCTACCTAGC
27780211 AAGCTACC
1 AAGCTACC
27780219 ACCTAAGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16
Consensus pattern (12 bp):
AAGCTACCTAGC
Found at i:27784320 original size:26 final size:26
Alignment explanation
Indices: 27784291--27784343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27784281 CTCATCCGAT
*
27784291 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27784317 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27784343 C
1 C
27784344 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27785576 original size:26 final size:26
Alignment explanation
Indices: 27785547--27785599 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27785537 TTGACTCGAT
*
27785547 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAAACTGGGAATGAACTGC-GTATG
*
27785573 CTTAAACTGGGGATGAACTGCGTATG
1 CTTAAACTGGGAATGAACTGCGTATG
27785599 C
1 C
27785600 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTGCGTATG
Found at i:27786647 original size:26 final size:26
Alignment explanation
Indices: 27786609--27786661 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27786599 GGCTCAAAAT
** *
27786609 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
27786635 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
27786661 C
1 C
27786662 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:27788021 original size:26 final size:26
Alignment explanation
Indices: 27787970--27788022 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27787960 CCAGTCTGAT
* *
27787970 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTACGAATGAACTCCATATG
*
27787996 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCATATG
27788022 C
1 C
27788023 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCATATG
Found at i:27788742 original size:26 final size:26
Alignment explanation
Indices: 27788704--27788756 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27788694 GGCTCAAAAT
27788704 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27788730 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27788756 C
1 C
27788757 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27789081 original size:25 final size:26
Alignment explanation
Indices: 27789047--27789098 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
27789037 CCGGTCTGAT
27789047 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27789072 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27789098 C
1 C
27789099 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27790589 original size:26 final size:26
Alignment explanation
Indices: 27790551--27790603 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27790541 GGCTCAAAAT
27790551 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27790577 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27790603 C
1 C
27790604 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27790867 original size:159 final size:157
Alignment explanation
Indices: 27790576--27791010 Score: 455
Period size: 159 Copynumber: 2.7 Consensus size: 157
27790566 AACTCCGTAT
* *
27790576 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCTACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACC-ACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** *
27790641 CCGGTCGTAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCCTGTGTGCTGTCGATC
64 CCAGCCGAAGAGGCAGAATGCACAAGCAGGGGATCGGCCCAGTCCCCTCCTGCATGCTGCCGATC
** * *
27790706 CTGCTACCGTAACCCTCAATTTAGTCT-GA
129 CTGCTACCACAACCCTCAATCT-GGCTGGA
* * * *
27790735 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAAC-CACGAAACGAGCGTGCGGGCGCTCA
* * * *
27790799 GCCAGCCGAAGAGGCATAATGCGCAAGCAGGGGATCGGCCCAGTCCCCTTCTGCATGCTGCCGGT
63 GCCAGCCGAAGAGGCAGAATGCACAAGCAGGGGATCGGCCCAGTCCCCTCCTGCATGCTGCCGAT
* ** *
27790864 CCTGCTGCCACAACCCTCGGTCTGGCTGGG
128 CCTGCTACCACAACCCTCAATCTGGCTGGA
* * * *
27790894 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAA-CCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
27790959 CAAGCCGGAGAGGCAGAATGCACAAGCCA-GGGATCGACCCAAT-CCCTCCTGC
64 CCAGCCGAAGAGGCAGAATGCACAAG-CAGGGGATCGGCCCAGTCCCCTCCTGC
27791011 GCACTGTCGA
Statistics
Matches: 227, Mismatches: 42, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
158 12 0.05
159 209 0.92
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCACGAAACGAGCGTGCGGGCGCTCAGCC
AGCCGAAGAGGCAGAATGCACAAGCAGGGGATCGGCCCAGTCCCCTCCTGCATGCTGCCGATCCT
GCTACCACAACCCTCAATCTGGCTGGA
Found at i:27791094 original size:26 final size:26
Alignment explanation
Indices: 27791053--27791157 Score: 122
Period size: 26 Copynumber: 4.0 Consensus size: 26
27791043 TTGATTCAAT
*
27791053 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
27791079 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27791105 CCTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27791131 CTTAGCCAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27791157 C
1 C
27791158 CTAAGCCAAC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
26 66 0.99
27 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27791486 original size:159 final size:157
Alignment explanation
Indices: 27791137--27791561 Score: 475
Period size: 159 Copynumber: 2.7 Consensus size: 157
27791127 TATGCTTAGC
* * *
27791137 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGCCG
1 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
* * **
27791202 GAGAGGC-TGAATGCGCAAGCAGGGGATCGGCTCGATCCCCCTTGCGTACTGTCGATCCTGCTGC
66 AAGAGGCAT-AATGCGCAAGC-GGGGATCGGCCCGATCCCCCTTGCGTACTACCGATCCTGCTGC
* * *
27791266 CACAACCCTCGGTTCGGTCTAATCTTATA
129 CACAACCCTCGGTCCGGTCTAAGCTTACA
* ** * * * * * *
27791295 -GTAGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGTC
1 CAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
*
27791359 GAAGAGGCATAATGCGCAAGTCGGGGA-CTGGCCCGATCCCCCTCTGCGTGCTACCGAT-CTCGC
65 GAAGAGGCATAATGCGCAAG-CGGGGATC-GGCCCGATCCCCCT-TGCGTACTACCGATCCT-GC
**
27791422 TGCCACAACCCTCGGTCCGGT-TGGGGCTTACA
126 TGCCACAACCCTCGGTCCGGTCT-AAGCTTACA
* * *
27791454 CATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTC-
1 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
* *
27791518 AGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTT
66 A-AGAGGCATAATGCGCAAG-CGGGGATCGGCCCGATCCCCCTT
27791562 TTGGGCTGTC
Statistics
Matches: 221, Mismatches: 36, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
157 2 0.01
158 90 0.41
159 127 0.57
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (157 bp):
CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
AAGAGGCATAATGCGCAAGCGGGGATCGGCCCGATCCCCCTTGCGTACTACCGATCCTGCTGCCA
CAACCCTCGGTCCGGTCTAAGCTTACA
Found at i:27791610 original size:553 final size:554
Alignment explanation
Indices: 27790553--27791661 Score: 1431
Period size: 553 Copynumber: 2.0 Consensus size: 554
27790543 CTCAAAATCT
** * *
27790553 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCTAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * * *
27790618 GAAATGAGCGTGCGGGCGCTCAGCCGGTCGTAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGG
66 GAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCAGGGGATCGGCCCGA
* * ** * * *
27790683 TCCCCTCCTGTGTGCTGTCGATCCTGCTACCGTAACCCTCAATTTAGTCTGATCTTAGACTGGGA
131 TCCCCTCCTGCGTACTGTCGATCCTGCTACCACAACCCTCAATTCAGTCTAATCTTAGACTAGGA
* **
27790748 ATGAACTCCGTATGCATAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGG
196 ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGG
* * *
27790813 CATAATGCGCAAGCAGGGGATCGGCCCAGTCCCCTTCTGCATGCTGCCGGTCCTGCTGCCACAAC
261 CATAATGCGCAAGCAGGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCTGCCACAAC
* * * *
27790878 CCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGG
326 CCTCGGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGG
* *
27790943 GCGTGCGGGCTCTCAGCAAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCTCC
391 GCGTGCGGGCGCTCAGCAAGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCTCC
* *** ** *
27791008 TGCGCACTGTCGATCTTACTGTCGCAACCCTCGGTTTGATTCAATCTTAGACCGGGAATGAACTC
456 TGCGCACTGTCGATCCTACACCCGCAACCCTCGGTTCAAGTCAATCTTAGACCGGGAATGAACTC
* *
27791073 CGTATGCTTAGACTGGGGATGAACTTTGTATGCC
521 CATATGCTTAGACTGGGGATGAACTCTGTATGCC
* *
27791107 TAGACTGGGAATGAACTCTGTATGCTTAGCCATGGAATGAACTCCATATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * *
27791172 GAAACGAGCATGCGGGCGCTCAGTCGGCCGGAGAGGCTGAATGCGCAAGCAGGGGATCGGCTCGA
66 GAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCAGGGGATCGGCCCGA
* * ** * * *
27791237 TCCCC-CTTGCGTACTGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCTAATCTTATAGTAGGA
131 TCCCCTCCTGCGTACTGTCGATCCTGCTACCACAACCCTCAATTCAGTCTAATCTTAGACTAGGA
* * * * *
27791301 ATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGTCGAAGAGG
196 ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGG
*
27791366 CATAATGCGCAAGTC-GGGGA-CTGGCCC-GATCCCCCTCTGCGTGCTACCGAT-CTCGCTGCCA
261 CATAATGCGCAAG-CAGGGGATC-GGCCCAG-TCCCCCTCTGCATGCTACCGATCCT-GCTGCCA
* *
27791427 CAACCCTCGGTCCGGTTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAA
322 CAACCCTCGGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAA
** * * * * **
27791492 ACGGGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCC
387 ACGGGCGTGCGGGCGCTCAGCAAGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAATCC
** ** * * **
27791557 C-CCTTTTGGGCTGTCGATCCTGCACCCGCAACCCTCGG-TCAAGTCTGATCTTAGATTGGGAAT
452 CTCC-TGCGCACTGTCGATCCTACACCCGCAACCCTCGGTTCAAGTC-AATCTTAGACCGGGAAT
*
27791620 GAACTTCATATGCTTAGACTGGGGATGAACTCTGTATGCC
515 GAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCC
27791660 TA
1 TA
27791662 AATCAACCCA
Statistics
Matches: 473, Mismatches: 76, Indels: 13
0.84 0.14 0.02
Matches are distributed among these distances:
552 10 0.02
553 343 0.73
554 120 0.25
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (554 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
GAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCAGGGGATCGGCCCGA
TCCCCTCCTGCGTACTGTCGATCCTGCTACCACAACCCTCAATTCAGTCTAATCTTAGACTAGGA
ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGG
CATAATGCGCAAGCAGGGGATCGGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCTGCCACAAC
CCTCGGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGG
GCGTGCGGGCGCTCAGCAAGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCTCC
TGCGCACTGTCGATCCTACACCCGCAACCCTCGGTTCAAGTCAATCTTAGACCGGGAATGAACTC
CATATGCTTAGACTGGGGATGAACTCTGTATGCC
Found at i:27792366 original size:26 final size:26
Alignment explanation
Indices: 27792328--27792380 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27792318 GGCTCAAAAT
27792328 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27792354 CTTAGACGT-GGAATGAACTCCGTATG
1 CTTAGAC-TAGGAATGAACTCCGTATG
27792380 C
1 C
27792381 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27792722 original size:159 final size:157
Alignment explanation
Indices: 27792520--27792877 Score: 357
Period size: 158 Copynumber: 2.3 Consensus size: 157
27792510 TCTTAGATTG
* * * * ** ** * *
27792520 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGAGTGCTGAGCCAACCGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCACTCAACCAACCGAAG
* * * *
27792585 AGGCATAATGCGCAAACC-GAGGATTAG-CCTGGTCCCCCTCTAC-GTGCTGCTA-G-TCCCGCT
66 AGGCAGAATGCGCAAACCAG-GGATCAGTCC-GAT--CCCT-T-CGGTG-TGCTACGATCCCACT
** *
27792645 ACCACAACCCTTGGTCTGGCTGGGGCTTAGGCAT
124 ACCACAACCCTTGGTCCAGCTGGGGCTTAGACAT
* * ** *
27792679 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAACCGGCCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCACTCAACCAACCGAAG
* * * *
27792744 AGGTAGAATGCGTAAGCCAGGGATCAGTCCGATCCCTTCGGTGTGCTACCGATCCCACTGCCACA
66 AGGCAGAATGCGCAAACCAGGGATCAGTCCGATCCCTTCGGTGTGCTA-CGATCCCACTACCACA
*
27792809 ACCCTTGGTCCAGCTGTGGCTTAGACAT
130 ACCCTTGGTCCAGCTGGGGCTTAGACAT
*
27792837 GGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGC
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGC
27792878 ATGCAGGGTG
Statistics
Matches: 164, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
155 6 0.04
156 4 0.02
157 5 0.03
158 74 0.45
159 72 0.44
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCACTCAACCAACCGAAG
AGGCAGAATGCGCAAACCAGGGATCAGTCCGATCCCTTCGGTGTGCTACGATCCCACTACCACAA
CCCTTGGTCCAGCTGGGGCTTAGACAT
Found at i:27792991 original size:159 final size:157
Alignment explanation
Indices: 27792669--27793006 Score: 351
Period size: 159 Copynumber: 2.1 Consensus size: 157
27792659 TCTGGCTGGG
* * * *
27792669 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAA
* * * ** * *
27792734 CCGGCCGGAGAGGTAGAATGCGTAAGCCAGGGATCAGTCCGATCCCTTCGGTGTGCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGATCCCCCCGGTATGCTACCGAACC
* *
27792799 CACTGCCACAACCCTTGGTCCAGCTGT
131 CACTGCCACAACCCTCGGTACAGCTGT
**
27792826 GGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCAGGGTGCTC
1 -GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGC-GGGCACTC
** * * * * *
27792891 AGTCGACTGGAGAGGCAGAATGCGTAAGCC-GAGGATC-GACCCGGTCCCCCCTGTATTCTGCCG
64 AACCGACCGGAGAGGCAGAATGCGTAAGCCAG-GGATCAG-CCCGATCCCCCCGGTATGCTACCG
* * * *
27792954 AACCTACTGTCGCAACCCTCGGTACGGTCTGAT
127 AACCCACTGCCACAACCCTCGGTACAG-CTG-T
27792987 -CTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
27793007 TGTATGCTTA
Statistics
Matches: 148, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
158 54 0.36
159 90 0.61
160 3 0.02
161 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAA
CCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGATCCCCCCGGTATGCTACCGAACC
CACTGCCACAACCCTCGGTACAGCTGT
Found at i:27793038 original size:26 final size:26
Alignment explanation
Indices: 27792987--27793039 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
27792977 ACGGTCTGAT
*
27792987 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
27793013 CTTAGATTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
27793039 C
1 C
27793040 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:27793392 original size:26 final size:26
Alignment explanation
Indices: 27793354--27793406 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27793344 CCGATGCAAT
*
27793354 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27793380 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27793406 C
1 C
27793407 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27793484 original size:367 final size:356
Alignment explanation
Indices: 27792801--27793468 Score: 806
Period size: 367 Copynumber: 1.8 Consensus size: 356
27792791 ACCGATCCCA
*
27792801 CTGCCACAACCCTTGGTCCAGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
1 CTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
* * *
27792866 CATGAAACGGGCATGCAGGGTGCTCAGTCGACTGGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
66 CATGAAACGAGCATGCAGGGCGCTCAGTCGACTAGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
* * *
27792931 CCGGTCCCCCCTGTATTCTGCCGAACCTACTGTCGCAACCCTCGGTACGGTCTGATCTTAGACTG
131 CCGGTCCCCCCTGTATTCTGCCGAACCTACTGTCACAACCCTCGGTACGATCTAATCTTAGACTG
* * * * * *
27792996 GGAATGAACTCTGTATGCTTAGATTGGGGATGAACTTCATATGCCTAAGTCAACCAACGAAACGA
196 GGAATGAACTCTGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACAA
* ** * * *
27793061 GCATGCGGGCGCTTAGTCAGCCAGAGAGGCATAATGCTCAAACCGCAGATCAGCCCGATACCCCT
261 GCATGCGGGCGCTCAACCAGCCAGAAAGGCAGAATGCACAAACCGCAGATCAGCCCGATACCCCT
27793126 CTGCGTGCTGTCGATCCTGCTATCGGTCCTG
326 CTGCGTGCTGTCGATCCTGCTATCGGTCCTG
* ** *
27793157 CTGCCACAACCCTTGGTCC-GACTGGGGCTTAGACATGGAATGATCTCTGTATGCCTAAGCCAAC
1 CTGCCACAACCCTTGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAAC
* * *** *
27793221 CGATGAAATGATTGTGCA-GGCGCTCAGTCGGCTAGAGAGGCAGAATGCGTAAGCC-AGGGATCG
65 CCATGAAACGAGCATGCAGGGCGCTCAGTCGACTAGAGAGGCAGAATGCGTAAGCCGA-GGATCG
* * * ** * *
27793284 GCCCGGTCCCCCCTGTATACTGTTGATCGTGCTGCTAGTCTTGCTGCCACAACCCTTGGTCCGAT
129 ACCCGGTCCCCCCTGTAT--T-CTG-CCGAAC--CTA--C-TG-T--CACAACCCTCGGTACGAT
*
27793349 GC-AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
182 -CTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-ATGGGAATGAACTCCATATGCCTAAG
* *
27793412 CCAACCCACAAAACAAGCATGCGGGCGCTCAACCGGCCAGAAAGGCAGAATGCACAA
245 CCAACCAACAAAACAAGCATGCGGGCGCTCAACCAGCCAGAAAGGCAGAATGCACAA
27793469 GTCGGGGATC
Statistics
Matches: 257, Mismatches: 39, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
354 1 0.00
355 58 0.23
356 69 0.27
357 1 0.00
358 2 0.01
359 3 0.01
361 3 0.01
363 1 0.00
364 2 0.01
365 1 0.00
367 114 0.44
368 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (356 bp):
CTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
CATGAAACGAGCATGCAGGGCGCTCAGTCGACTAGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
CCGGTCCCCCCTGTATTCTGCCGAACCTACTGTCACAACCCTCGGTACGATCTAATCTTAGACTG
GGAATGAACTCTGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACAA
GCATGCGGGCGCTCAACCAGCCAGAAAGGCAGAATGCACAAACCGCAGATCAGCCCGATACCCCT
CTGCGTGCTGTCGATCCTGCTATCGGTCCTG
Found at i:27793504 original size:367 final size:356
Alignment explanation
Indices: 27792801--27793599 Score: 799
Period size: 367 Copynumber: 2.2 Consensus size: 356
27792791 ACCGATCCCA
*
27792801 CTGCCACAACCCTTGGTCCAGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
1 CTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
* * *
27792866 CATGAAACGGGCATGCAGGGTGCTCAGTCGACTGGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
66 CATGAAACGAGCATGCAGGGCGCTCAGTCGACTAGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
* * *
27792931 CCGGTCCCCCCTGTATTCTGCCGAACCTACTGTCGCAACCCTCGGTACGGTCTGATCTTAGACTG
131 CCGGTCCCCCCTGTATTCTGCCGAACCTACTGTCACAACCCTCGGTACGATCTAATCTTAGACTG
* * * * * *
27792996 GGAATGAACTCTGTATGCTTAGATTGGGGATGAACTTCATATGCCTAAGTCAACCAACGAAACGA
196 GGAATGAACTCTGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACAA
* ** * * *
27793061 GCATGCGGGCGCTTAGTCAGCCAGAGAGGCATAATGCTCAAACCGCAGATCAGCCCGATACCCCT
261 GCATGCGGGCGCTCAACCAGCCAGAAAGGCAGAATGCACAAACCGCAGATCAGCCCGATACCCCT
* *
27793126 CTGCGTGCTGTCGATCCTGCTATCGGTCCTG
326 CTACATGCTGTCGATCCTGCTATCGGTCCTG
* ** *
27793157 CTGCCACAACCCTTGGTCC-GACTGGGGCTTAGACATGGAATGATCTCTGTATGCCTAAGCCAAC
1 CTGCCACAACCCTTGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAAC
* * *** *
27793221 CGATGAAATGATTGTGCA-GGCGCTCAGTCGGCTAGAGAGGCAGAATGCGTAAGCC-AGGGATCG
65 CCATGAAACGAGCATGCAGGGCGCTCAGTCGACTAGAGAGGCAGAATGCGTAAGCCGA-GGATCG
* * * ** * *
27793284 GCCCGGTCCCCCCTGTATACTGTTGATCGTGCTGCTAGTCTTGCTGCCACAACCCTTGGTCCGAT
129 ACCCGGTCCCCCCTGTAT--T-CTG-CCGAAC--CTA--C-TG-T--CACAACCCTCGGTACGAT
*
27793349 GC-AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
182 -CTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-ATGGGAATGAACTCCATATGCCTAAG
* * ** **
27793412 CCAACCCACAAAACAAGCATGCGGGCGCTCAACCGGCCAGAAAGGCAGAATGCACAAGTCGGGGA
245 CCAACCAACAAAACAAGCATGCGGGCGCTCAACCAGCCAGAAAGGCAGAATGCACAAACCGCAGA
* * * *
27793477 TCAGCCCGGT-CTCTCC-CTACATGCTGTCGATCTTGCT-GCTAGTCCTG
310 TCAGCCCGATAC-C-CCTCTACATGCTGTCGATCCTGCTATC-GGTCCTG
* * * * * ** * * *
27793524 CTACCGCAACCCTT-GTCCCGGTCCGATCTTAGAC-TGCAAGTGAACTCCGTATGCCTAAGCCAA
1 CTGCCACAACCCTTGGTCCAGCT-GGGGCTTAGACATGGAA-TGAACTCCCTATGACTAAGCCAA
*
27793587 CCCACGAAACGAG
64 CCCATGAAACGAG
27793600 TGTACGGGTA
Statistics
Matches: 359, Mismatches: 62, Indels: 33
0.79 0.14 0.07
Matches are distributed among these distances:
354 1 0.00
355 58 0.16
356 69 0.19
357 1 0.00
358 2 0.01
359 3 0.01
361 3 0.01
363 1 0.00
364 2 0.01
365 1 0.00
366 11 0.03
367 203 0.57
368 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (356 bp):
CTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
CATGAAACGAGCATGCAGGGCGCTCAGTCGACTAGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
CCGGTCCCCCCTGTATTCTGCCGAACCTACTGTCACAACCCTCGGTACGATCTAATCTTAGACTG
GGAATGAACTCTGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACAA
GCATGCGGGCGCTCAACCAGCCAGAAAGGCAGAATGCACAAACCGCAGATCAGCCCGATACCCCT
CTACATGCTGTCGATCCTGCTATCGGTCCTG
Found at i:27793798 original size:158 final size:155
Alignment explanation
Indices: 27793519--27794040 Score: 518
Period size: 158 Copynumber: 3.3 Consensus size: 155
27793509 TTGCTGCTAG
* * * * *
27793519 TCCTGCT-ACCGCAACCCTTGTCCCGGTCCGATCTTAGACTGCAAGTGAACTCCGTATGCCTAAG
1 TCCTGCTGACAGCAACCCTCGT-TCGGTCTGATCTTAGACTGGAA-TGAACTCCGTATGCCTAAG
** * * * *
27793583 CCAACCCACGAAACGAGTGTACGGGTACTCAGCAGGTCGGAGAGGCAGAATGCACAAGTCGGGGA
64 CCAACCCACGAAACGAGCATGCGGGTACTGAGCCGATCGGAGAGGCAGAATGCACAAG-CGGGGA
*
27793648 TTGGCCCGATCCCCCCTACGTGCTGTCGA
128 TTGGCCCGGTCCCCCCTAC-TGCTGTCGA
*
27793677 TCCTGCT-ACAGCAACCCTCGTTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGACAGCAACCCTCGTTC-GGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAG
* * * *
27793741 TCAACCCACGAAACGAGCATGCGGGTGCTGAGCCGACCGGAGAGGCATAATGCACAAGCTGGGGA
64 CCAACCCACGAAACGAGCATGCGGGTACTGAGCCGATCGGAGAGGCAGAATGCACAAGC-GGGGA
** ** * *
27793806 TCAGCTTGGTCCCCCTCTATCTGCTGCCGG
128 TTGGCCCGGTCCCCC-CTA-CTGCTGTCGA
* * * *
27793836 TCTTGCTGCCA-CAACCCTCGGTTCGG-CTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAA
1 TCCTGCTGACAGCAACCCTC-GTTCGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAA
* ** * *
27793899 GCCAACCCACGAAACGGGCATGCGGGCCCTTG-GCCGATCGGAGAGGCAGAATGCGCAAGCCAGG
63 GCCAACCCACGAAACGAGCATGCGGGTAC-TGAGCCGATCGGAGAGGCAGAATGCACAAG-CGGG
*
27793963 GATTGGCCCGGT-CCCCCTGCATGCTGTCGA
126 GATTGGCCCGGTCCCCCCTAC-TGCTGTCGA
* * *
27793993 TCCTACTGTC-GCAACCCTCGATTCGATCTGATCTTAGACTGGGAATGA
1 TCCTGCTGACAGCAACCCTCG-TTCGGTCTGATCTTAGACT-GGAATGA
27794041 GTTCACGGGT
Statistics
Matches: 300, Mismatches: 48, Indels: 33
0.79 0.13 0.09
Matches are distributed among these distances:
156 3 0.01
157 46 0.15
158 123 0.41
159 117 0.39
160 11 0.04
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (155 bp):
TCCTGCTGACAGCAACCCTCGTTCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACGAGCATGCGGGTACTGAGCCGATCGGAGAGGCAGAATGCACAAGCGGGGATTG
GCCCGGTCCCCCCTACTGCTGTCGA
Found at i:27796053 original size:159 final size:156
Alignment explanation
Indices: 27795760--27796262 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 156
27795750 ACTCCGTAAG
* *
27795760 CTTAGACATGGAATAAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * * * * *
27795825 CGACCGGAGAGGTAGAATGTGCAAGTCGGGGATCGGCCCGATCCCTCCCTACATGCTGTCGATCT
66 CGGCCGAAGAGGCAGAATGCGCAAGT-AGGGATCGGCCCGATCCC-CCTTACGTGCT-CCGGTCC
* * *
27795890 TGCTGCTGCCACCCTCGGTCCAGTCTGAT
128 TGCTGCCGCAACCCTCAGTCCAGTCTGAT
* * * *
27795919 CTTAGAC-TAGGAATGAACTACGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * *
27795983 CCGGCCGAAGAGGCATAATGCGCAAGTTGAGGATCGGCCTGATCCCCCTTTACGTGCTACCGGTC
65 CCGGCCGAAGAGGCAGAATGCGCAAGTAG-GGATCGGCCCGATCCCCC-TTACGTGCT-CCGGTC
* **
27796048 CTGCTGCCACAACCCTCAGTCCAG-CTGGGG
127 CTGCTGCCGCAACCCTCAGTCCAGTCT-GAT
* * * * * * * * * *
27796078 CTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGTGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * *
27796143 CGGCC-AGAGAGGCAGAATGCACAAGCAGGGAATCGGCCCGATCCCCCTTGCGTGCTGCGGATCC
66 CGGCCGA-AGAGGCAGAATGCGCAAGTAGGG-ATCGGCCCGATCCCCCTTACGTGCTCCGG-TCC
*
27796207 TGCTACCGCAACCCTCAGTCTCA-TCTGAT
128 TGCTGCCGCAACCCTCAGTC-CAGTCTGAT
*
27796236 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
27796263 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 53, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 61 0.22
159 214 0.76
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGTAGGGATCGGCCCGATCCCCCTTACGTGCTCCGGTCCTGC
TGCCGCAACCCTCAGTCCAGTCTGAT
Found at i:27796272 original size:26 final size:26
Alignment explanation
Indices: 27796236--27796288 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27796226 CTCATCTGAT
*
27796236 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27796262 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27796288 C
1 C
27796289 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27797334 original size:26 final size:26
Alignment explanation
Indices: 27797296--27797348 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27797286 CCAGTCTGAT
*
27797296 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
27797322 CTTAGACAT-GGAATGAAATCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
27797348 C
1 C
27797349 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:27798120 original size:159 final size:158
Alignment explanation
Indices: 27797851--27799178 Score: 1019
Period size: 159 Copynumber: 8.3 Consensus size: 158
27797841 CTTGCTACTG
* * * *
27797851 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * ** * *
27797916 ATGAGAGTGTGGTTGCTCAGCCAACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCC
66 ATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
**
27797981 CCCCTTTTGTGCTGTCGATCCTGCTATCC
131 CCCC-TGCGTGCTGTCGATCCTGCTATCC
* *
27798010 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * ** * * *
27798075 ACGAGCGTGAGGGCGCT-AGGCCAGCCGGAGAGGCTTAATGCGCAAGCCTGGGATCGAACCTATC
66 ATGAGCGTGCGGGCGCTCA-GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC
** * **
27798139 CCTCTTTGCGTGCTGTCGATCCCG-TCGCC
130 CC-CCCTGCGTGCTGTCGATCCTGCTATCC
* * ** ** * * * *
27798168 ACAACCCTCGATCTAG-CTGGGGCTTAGACAT-GGAATGAACTCCCCACGCCTAAACCAACCTAC
1 -CAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * * * * *
27798231 GAAATGGGTGTGTGGGCACTCAGTCGGTCGGAGAGGTAGAATGCTCAAGCCAGAGATCGACCCGA
63 GAAATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
* *
27798296 TCCACCCCTGCGTGCTGTCGATCCTGCTGTCG
128 TCC-CCCCTGCGTGCTGTCGATCCTGCTATCC
* * *
27798328 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * * * * * * *
27798393 ATGAGCGTGCGGGCGCTGAGCTAACCGAAAAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCC
66 ATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
** * * * *
27798458 CTCTTTGCGTGCTGCCGGTCCCGCT-GCC
131 C-CCCTGCGTGCTGTCGATCCTGCTATCC
* ** * *
27798486 ACAACTCTTC-GTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCCAAGCCAACCCA
1 -CAAC-CCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * ** *
27798548 TGAAACGGGTGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCTG
62 TGAAATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCG
* * * * * *
27798613 GTCCCTCCTACATGCTATCGATCCTGCTGCTGGTCCTACTACTG
127 ATCCCCCCTGCGTGCTGTCGA---T-C--CT-G--CTA-T-C-C
* ** * *
27798657 CAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCCAAGCCAACCCATGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * * * * ** * *
27798722 ATGAGAGTGCGGGCGCTTAG-CTGATCGGAGAGGCAGAATGCGTAAGTCGGGGGCCGATCTGATC
66 ATGAGCGTGCGGGCGCTCAGCCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC
* * *
27798786 CCCCCTGCGTACTGTCGATCCTGCTGTCA
130 CCCCCTGCGTGCTGTCGATCCTGCTATCC
** * * *
27798815 CATTCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * ** * * * **
27798880 ATGAGCGTACGGGCGTTGAGCCAATCGGAGAGGCATAATGCAC-AGGCGGGGATCGGTCCGATCC
66 ATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
* * *
27798944 CCCTCTGCATGCTGTCGGTCCCGCTA-CC
131 CCC-CTGCGTGCTGTCGATCCTGCTATCC
** *
27798972 ACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 -CAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * * * *
27799035 GAAACGGGTGTGCGGGTGCTCAACCGGCCAGAGAGGTAGAATGCGCAAGCCAGGGATC-AGCTCG
63 GAAATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCG
* * * *
27799099 GTCCCCCCTGCGTGCTGCCGATCCTGCTGTCG
127 ATCCCCCCTGCGTGCTGTCGATCCTGCTATCC
* **
27799131 CAACCCTCGGTCCGGTCTGATCACAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
27799179 TTAGACTGGG
Statistics
Matches: 906, Mismatches: 221, Indels: 85
0.75 0.18 0.07
Matches are distributed among these distances:
157 23 0.03
158 257 0.28
159 479 0.53
160 13 0.01
161 3 0.00
162 1 0.00
163 1 0.00
164 3 0.00
165 1 0.00
166 1 0.00
167 3 0.00
169 6 0.01
170 113 0.12
171 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.21
Consensus pattern (158 bp):
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
ATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
CCCCTGCGTGCTGTCGATCCTGCTATCC
Found at i:27799184 original size:26 final size:26
Alignment explanation
Indices: 27799155--27799204 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
27799145 GTCTGATCAC
27799155 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
27799181 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
27799205 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:27799904 original size:26 final size:26
Alignment explanation
Indices: 27799866--27799918 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27799856 GGGTCAAAAT
27799866 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27799892 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27799918 C
1 C
27799919 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27800102 original size:26 final size:26
Alignment explanation
Indices: 27800050--27800102 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
27800040 CCAGTCTGAT
**
27800050 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCAAATG
* * *
27800076 CTTAGACTGGGGATGAACTCCAAATG
1 CTTAAACTGGGAATAAACTCCAAATG
27800102 C
1 C
27800103 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCAAATG
Found at i:27800469 original size:26 final size:26
Alignment explanation
Indices: 27800418--27800470 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27800408 TCGGTCTGAT
*
27800418 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27800444 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27800470 C
1 C
27800471 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27800922 original size:158 final size:157
Alignment explanation
Indices: 27800444--27800944 Score: 509
Period size: 158 Copynumber: 3.2 Consensus size: 157
27800434 ACTCTATATG
* *
27800444 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGAGCGGGCGCTCAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCTCAG
* * * * *
27800508 TCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCTCCCTACGTGCTGTCGATC
65 TCGA-CCGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCC-CCTTACGTGCTGTCGGTC
* **
27800573 CTACTACCACAACCCTCGGTCCGATCCAAT
128 CTGCTACCACAACCCTCGGTCCGATCCGGT
* * * * * *
27800603 CTT--ACAGTGGGAATTAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTGCTGAA
1 CTTAGACA-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTCAG
* * * * *
27800666 CCGACCGAAGAGGCATAATGCGCAAG-CCAGGGA-CGGCCCGATCCCCCTCTGCGTTCTGTCGGT
65 TCGACCG-AGAGGCAGAATGCGCAAGTCGA-GGATCGGCCCGATCCCCCT-TACGTGCTGTCGGT
* * * *
27800729 -CTCGCTGCCACAACCCTCTGTCCGA-CTGGGG
127 CCT-GCTACCACAACCCTCGGTCCGATC-CGGT
* * *
27800760 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCAGGCGCTCAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCTCAG
* * * *
27800824 TCGACCAGAGAGGTAGAATGCACAAGTCGATGATCGGCCCGGTCCCCCTTACGTGCTG-CTGGTC
65 TCGACC-GAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTTACGTGCTGTC-GGTC
*
27800888 CTGCTACCGCAACCCTCGGTCCGATCCGGT
128 CTGCTACCACAACCCTCGGTCCGATCCGGT
* *
27800918 CTTAGAC-TGGGAATGAAGTCCATATGC
1 CTTAGACATGGGAATGAACTCCGTATGC
27800945 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 50, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
156 5 0.02
157 92 0.33
158 112 0.41
159 66 0.24
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTCAGT
CGACCGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTTACGTGCTGTCGGTCCTG
CTACCACAACCCTCGGTCCGATCCGGT
Found at i:27801310 original size:26 final size:26
Alignment explanation
Indices: 27801273--27801323 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27801263 TGATTCGATC
27801273 TTAGACTGGGAATAAACTCCGTATGT
1 TTAGACTGGGAATAAACTCCGTATGT
*
27801299 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATAAACTCCGTATG
27801324 CCTAAGCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGT
Found at i:27801700 original size:159 final size:159
Alignment explanation
Indices: 27801411--27801728 Score: 377
Period size: 159 Copynumber: 2.0 Consensus size: 159
27801401 CGGTCCCCGC
* * * * * * *
27801411 CTACGTGCTGTCGATCCTGTTACCACAACCCTCGGTCCGGGTCGATCTTAGACTAGGAATGAAAT
1 CTACATGCTGCCGATCCTGTCACCACAACCCTCGGTCCAGCTAGAGCTTAGACTAGGAATGAAAT
* * * * * * *
27801476 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAGCTGGAGACGCATAATG
66 CCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAACCGGAGACGCAGAATG
*
27801541 CGAAAGCCAAGGATCAGCCCGATCCCCCT
131 CGAAAGCCAAGGACCAGCCCGATCCCCCT
* * *
27801570 CTACATGCTGCCGGTCCTGTCACCACAACCCTCGGTCCAGCTAGGGCTTAGAC-ATGGAATGAAC
1 CTACATGCTGCCGATCCTGTCACCACAACCCTCGGTCCAGCTAGAGCTTAGACTA-GGAATGAAA
* * * * *
27801634 TCCGTATGCTTAAGCCAACCCACTAAATGAGCGTGCGGGCGCTCAACCAACCGGAGAGGTAGAAT
65 TCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAACCGGAGACGCAGAAT
* ***
27801699 GCGCAAGCTGGGGACCAGCCCGATCCCCCT
130 GCGAAAGCCAAGGACCAGCCCGATCCCCCT
27801729 GCGTGCTACC
Statistics
Matches: 131, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
158 1 0.01
159 130 0.99
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (159 bp):
CTACATGCTGCCGATCCTGTCACCACAACCCTCGGTCCAGCTAGAGCTTAGACTAGGAATGAAAT
CCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAACCGGAGACGCAGAATG
CGAAAGCCAAGGACCAGCCCGATCCCCCT
Found at i:27802077 original size:511 final size:501
Alignment explanation
Indices: 27801091--27802362 Score: 1345
Period size: 511 Copynumber: 2.5 Consensus size: 501
27801081 GGCCCTGCTG
* *
27801091 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATACCAAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCAT
* * * * ** *
27801156 AAAACGAGCGTCCGGGTGCTCAACCGGCTGGAGAGGTAGAATGCGTAAGCCGAGGATCAGTTCGG
66 AAAACGAGCGTGCGGGTGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGA
* *
27801221 TACCCCCTGCATGCTACCAATCCTGCTACCGCAACCTCGGTCTGATTCGATCTTAGACTGGGAAT
131 TACCCCCTGCATGCTACCAATACTGCTACCGCAACCTCGGTCCGATTCGATCTTAGACTGGGAAT
* * * ** *
27801286 AAACTCCGTATGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAACGTGCGTG
196 AAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTA
* * *
27801351 CGGGTGCTCAGTCGGTCGGAGAGGCCAAATGTGCAAGTCGGGGACCGACTCGGTCCCCGCCTACG
261 CGGGTGCTCAGCCGGTCGGAGAGGCCAAATGCGCAAGCCGGGGACCGACTCGGTCCCCGCCTACG
* * *
27801416 TGCTGTCGATCCTGTTACCACAACCCTCGGTCCGGGTCGATCTTAGACTAGGAATGAAATCCGTA
326 TGCTATCGATCCTGCTACCACAACCCTCGGTCCGGATCGATCTTAGACTAGGAATGAAATCCGTA
* * **
27801481 TGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAGCTGGAGACGCATAATGCGAAA
391 TACCTAAGTCAACCCACAAAACGAGCGGGCGGGCACTGAGCCAGCTGGAGACGCATAATGCGAAA
* *
27801546 GCCAAGGATCAGCCCGATCCC-CCTCTACATGCTGCCGGTCC-TG-TCA
456 GCCAAGGATCAGCCCGATCCCTCC-CTACATGCTGCAGG-CCACGCT-A
* * * * *
27801592 CCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCA-
* * ** * *
27801657 T-AAATGAGCGTGCGGGCGCTCAACCAACCGGAGAGGTAGAATGCGCAAGCTGGGGACCAGCCCG
65 TAAAACGAGCGTGCGGGTGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCG
*
27801721 AT-CCCCCTGCGTGCTACCGATCCTACTACTGGTCCTACTGCCGCAACCCTCGGTCCGATGT-GA
130 ATACCCCCTGCATGCTACC-A----A-TACT-G--CTA---CCGCAA-CCTCGGTCCGAT-TCGA
*
27801784 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
181 TCTTAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
* *
27801849 CACGAAACAAGCGTACGGGTGCTCAGCCGGTTGGAGAGG-TAGAATGCGCAAGCCGGGGA-CGAC
246 CACGAAACAAGCGTACGGGTGCTCAGCCGGTCGGAGAGGCCA-AATGCGCAAGCCGGGGACCGAC
* * * *
27801912 -CGGGTTCCC-CCTACGTGCTATTGATCCTGCTGCCACAACCCTCGGT-CTGATCCGATCTTAGA
310 TC-GGTCCCCGCCTACGTGCTATCGATCCTGCTACCACAACCCTCGGTCCGGAT-CGATCTTAGA
* * ** * *
27801974 CTGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAACGAGTGGGCGGGCACTGAGCC-GGTC
373 CTAGGAATGAAATCCGTATACCTAAGTCAACCCACAAAACGAGCGGGCGGGCACTGAGCCAGCT-
* * * * ** * * * *
27802038 GGAGAGGCATAATGCGTAAGTCGAGGATTGGCTCGATCCCTCCCTACGTGCTGTAGGCCACGCTG
437 GGAGACGCATAATGCGAAAGCCAAGGATCAGCCCGATCCCTCCCTACATGCTGCAGGCCACGCTA
* *
27802103 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCAT
* * * *** * *
27802168 GAAACG-GTCGTGCGGGTGCTCAACCGGCCGGAGAGGTAGAATGCACAAGTC-AGGGATTGGTCT
66 AAAACGAG-CGTGCGGGTGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGA-GGACCAGCCC
* *** * * * * * * *
27802231 GGT-CCCCTCTATGTGCTACCGATCCTACTACCGTAACCCTCGGTTCG-GTCTGATCTTAGACTA
129 GATACCCC-CTGCATGCTACCAATACTGCTACCGCAA-CCTCGGTCCGATTC-GATCTTAGACTG
* ** * * * *
27802294 GGAATGAACTCCGTATGCTTAGACCA-GGGATGAATTTCGTATGCCTAAGTCAACCCACGAAACG
191 GGAATAAACTCCGTATGCTTAGA-CATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA
27802358 AGCGT
255 AGCGT
27802363 GCGGACTAGG
Statistics
Matches: 643, Mismatches: 99, Indels: 59
0.80 0.12 0.07
Matches are distributed among these distances:
498 1 0.00
500 101 0.16
501 112 0.17
502 1 0.00
503 3 0.00
505 1 0.00
506 6 0.01
507 2 0.00
509 3 0.00
510 9 0.01
511 250 0.39
512 30 0.05
513 123 0.19
514 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (501 bp):
CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCAT
AAAACGAGCGTGCGGGTGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGA
TACCCCCTGCATGCTACCAATACTGCTACCGCAACCTCGGTCCGATTCGATCTTAGACTGGGAAT
AAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTA
CGGGTGCTCAGCCGGTCGGAGAGGCCAAATGCGCAAGCCGGGGACCGACTCGGTCCCCGCCTACG
TGCTATCGATCCTGCTACCACAACCCTCGGTCCGGATCGATCTTAGACTAGGAATGAAATCCGTA
TACCTAAGTCAACCCACAAAACGAGCGGGCGGGCACTGAGCCAGCTGGAGACGCATAATGCGAAA
GCCAAGGATCAGCCCGATCCCTCCCTACATGCTGCAGGCCACGCTA
Found at i:27802218 original size:159 final size:158
Alignment explanation
Indices: 27801810--27802227 Score: 402
Period size: 159 Copynumber: 2.6 Consensus size: 158
27801800 AACTCCGTAT
* * * * *
27801810 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAG-CGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAAC-GGTCGTGCGGGTGCTCA
* * * * * * * * *
27801874 GCCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGA-CGACCGGGTTCCCCCTACGTGCTATTGATC
65 GCCGGTCGGAGAGGTAGAATGCGCAAGTCGAGGATTGGCCGGATCCCCCCTACGTGCTATAGAGC
* *
27801938 CTGCTGCCACAACCCTCGGTCTGATCCGA
130 CCGCTGCCACAACCCTCGGTCGGATCCGA
* * * ** *
27801967 TCTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAACGAGT-GGGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCATGAAACG-GTCGTGCGGGTGCTC
* * * *
27802030 AGCCGGTCGGAGAGGCATAATGCGTAAGTCGAGGATTGGCTC-GATCCCTCCCTACGTGCTGTAG
64 AGCCGGTCGGAGAGGTAGAATGCGCAAGTCGAGGATTGGC-CGGATCCC-CCCTACGTGCTATAG
* * *
27802094 -GCCACGCTGCCACAACCCTCGGTCCGGCT-GGG
127 AGCC-CGCTGCCACAACCCTCGGT-CGGATCCGA
* * *
27802126 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCATGAAACGGTCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGGTCGTGCGGGTGCTCAG
* *
27802191 CCGGCCGGAGAGGTAGAATGCACAAGTC-AGGGATTGG
66 CCGGTCGGAGAGGTAGAATGCGCAAGTCGA-GGATTGG
27802228 TCTGGTCCCC
Statistics
Matches: 207, Mismatches: 43, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 77 0.37
158 11 0.05
159 114 0.55
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGGTCGTGCGGGTGCTCAG
CCGGTCGGAGAGGTAGAATGCGCAAGTCGAGGATTGGCCGGATCCCCCCTACGTGCTATAGAGCC
CGCTGCCACAACCCTCGGTCGGATCCGA
Found at i:27802326 original size:26 final size:26
Alignment explanation
Indices: 27802285--27802337 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27802275 TCGGTCTGAT
*
27802285 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
* * *
27802311 CTTAGACCAGGGATGAATTTCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
27802337 C
1 C
27802338 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:27802996 original size:26 final size:26
Alignment explanation
Indices: 27802958--27803010 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27802948 GGCTTAAACT
27802958 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
27802984 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
27803010 C
1 C
27803011 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27803620 original size:196 final size:197
Alignment explanation
Indices: 27803269--27803658 Score: 475
Period size: 196 Copynumber: 2.0 Consensus size: 197
27803259 GTGCTACAGA
* * * * *
27803269 TCCTGCTGTCGCAACCTTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAT
1 TCCTGCTGTCGCAACCCTCAGTCCGGTTCGATCCTAGACTAGGAATGAACTCCGCATGCTTAGAA
* * ** * *
27803334 TGGGGATGTACATCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGATCGG
66 TGGGAATGAACATCGTATGCCTAACCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGATCGG
* ** ** * *
27803399 AGAGGTAGAATGCGTAAGTCGGGGATCAACCCGGTCCC-CCCTGCGTACTGTTGATCCTGCTGTT
131 AGAGGCAGAATGCAAAAACCGGGGATCAACCCGGTCCCTCCCAGCGTACTGTCGATCCTGCTGTT
27803463 GG
196 GG
* *
27803465 TCCTGCTG-CTGCAACCCTC-GATCCGGTTCGATCCTAGATTAGGAATGAACTCCGCATTCTTAG
1 TCCTGCTGTC-GCAACCCTCAG-TCCGGTTCGATCCTAGACTAGGAATGAACTCCGCATGCTTAG
* *
27803528 ACAT-GGAATGAAC-TCCGTATGCCTAACCCAACCCACAAAACAAGCATGCGGGCGCTCAGCTGA
64 A-ATGGGAATGAACAT-CGTATGCCTAACCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGA
* ** *
27803591 TCGGAGAGGCAGAATGTAAAAACCGGGGATTGACCCGGTCCCTCCCAGCGTGCTGTCGATCCTGC
127 TCGGAGAGGCAGAATGCAAAAACCGGGGATCAACCCGGTCCCTCCCAGCGTACTGTCGATCCTGC
27803656 TGT
192 TGT
27803659 CGCAACCCTC
Statistics
Matches: 163, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
195 3 0.02
196 137 0.84
197 23 0.14
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (197 bp):
TCCTGCTGTCGCAACCCTCAGTCCGGTTCGATCCTAGACTAGGAATGAACTCCGCATGCTTAGAA
TGGGAATGAACATCGTATGCCTAACCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGATCGG
AGAGGCAGAATGCAAAAACCGGGGATCAACCCGGTCCCTCCCAGCGTACTGTCGATCCTGCTGTT
GG
Found at i:27805297 original size:26 final size:26
Alignment explanation
Indices: 27805268--27805335 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
27805258 TTAGACTGGG
27805268 AATGAACTCTGTATGCTTAGACATGT
1 AATGAACTCTGTATGCTTAGACATGT
27805294 AATGAACTCTGTATGCTTAGACATGT
1 AATGAACTCTGTATGCTTAGACATGT
*
27805320 AATGAACTCCGTATGC
1 AATGAACTCTGTATGC
27805336 CTAAGTCAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (26 bp):
AATGAACTCTGTATGCTTAGACATGT
Found at i:27805655 original size:26 final size:26
Alignment explanation
Indices: 27805626--27805678 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27805616 CCGATTTGAT
*
27805626 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
27805652 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
27805678 C
1 C
27805679 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:27805886 original size:26 final size:26
Alignment explanation
Indices: 27805835--27805887 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27805825 TCAATCCAAT
* *
27805835 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
27805861 CTTAGAC-GTGGAATGAACTCCCTATG
1 CTTAGACTG-GGAATGAACTCCCTATG
27805887 C
1 C
27805888 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:27806077 original size:26 final size:26
Alignment explanation
Indices: 27806026--27806078 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27806016 CCGGTTTGAT
*
27806026 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
27806052 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
27806078 C
1 C
27806079 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:27806200 original size:400 final size:393
Alignment explanation
Indices: 27805467--27806307 Score: 1055
Period size: 400 Copynumber: 2.1 Consensus size: 393
27805457 TCCGGCTGGG
*
27805467 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGCTCAA
* * * * * *
27805532 CCAACCGAAGAGGCAAAATGCGTAAGCCGGGGATTGGCTCGGTCCCCCCTGCATGCTATCGATCC
66 CCAACCGAAGAGGCAAAATACGCAAGCCGAGGATTGGCTCGATCCCCCCTGCATGCTACCAATCC
* *
27805597 TGCTGCCGCAACCCTCGATCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
131 TGCAGCCGCAACCCTCGATCCGATTTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
* *
27805662 GGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCCTGTAAGCACTCAGCCGATCGGAGA
196 GGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAAGCACTCAGCCGATCGGAGA
* * * * * *
27805727 GGTCGATCAAAGAGGTAGAATGCGCAAATTGAGGATCGGCCTGATCCCCCCTACGTGCTATCGAT
261 GGCCGATCAAAGAGGTAGAATGCACAAATCGAGGATAGCCCAGATCCCCCCTACGTGCTATCGAT
*
27805792 CCTGCTACTGGTCCTACCGCCATAACCCTCGGT-TCAATCCAATCTTAGACTGGGAATGAACTTC
326 CCTGCTACTGGTCCTACCGCCATAACCCTCGGTCT-AATCCAATCTTAGACTGGGAATGAACTCC
27805856 GTAT
390 GTAT
*
27805860 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCATG-AACGGGACGTTGCGAACCGC-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGG-CG-TGCG-ACCGCT
*** * *
27805923 CTAACCCGTGCGAAAGAGGCAGAGATACGCAAGCCGAGGATTTGGCT-GATCCCCCCTGCGTGCT
63 C-AA-CCAACCG-AAGAGGCA-AAATACGCAAGCCGAGGA-TTGGCTCGATCCCCCCTGCATGC-
* * *
27805987 TACCAATCCCTGCAGCCGCAACCGTC-AGTCCGGTTTGATCTTAGACTAGGAATGAACTTCATAT
122 TACCAAT-CCTGCAGCCGCAACCCTCGA-TCCGATTTGATCTTAGACTAGGAATGAACTCCATAT
* * ** *
27806051 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
185 GCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAAGCACTCAG
* * * * * *
27806116 CCGGTCGGAGGGGCCGGTCAAAGAGGTAGAATGCATAAGTCGGGGAATAGCCCAG-TCCCCCCTA
250 CCGATCGGAGAGGCCGATCAAAGAGGTAGAATGCACAAATCGAGG-ATAGCCCAGATCCCCCCTA
* * * * * * * * * * *
27806180 TGTGCTGTCGATCTTGCTACTGGTCCTGCTGTCGTAACCCTCGGTCTGATTCGATCTTAGATTGG
314 CGTGCTATCGATCCTGCTACTGGTCCTACCGCCATAACCCTCGGTCTAATCCAATCTTAGACTGG
27806245 GAATGAACTCCGTAT
379 GAATGAACTCCGTAT
* * *
27806260 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
27806308 AGTGTACTGG
Statistics
Matches: 381, Mismatches: 53, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
392 6 0.02
393 44 0.12
394 5 0.01
395 6 0.02
396 4 0.01
397 8 0.02
398 28 0.07
399 12 0.03
400 257 0.67
401 11 0.03
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (393 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGCTCAA
CCAACCGAAGAGGCAAAATACGCAAGCCGAGGATTGGCTCGATCCCCCCTGCATGCTACCAATCC
TGCAGCCGCAACCCTCGATCCGATTTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
GGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAAGCACTCAGCCGATCGGAGA
GGCCGATCAAAGAGGTAGAATGCACAAATCGAGGATAGCCCAGATCCCCCCTACGTGCTATCGAT
CCTGCTACTGGTCCTACCGCCATAACCCTCGGTCTAATCCAATCTTAGACTGGGAATGAACTCCG
TAT
Found at i:27806763 original size:158 final size:157
Alignment explanation
Indices: 27806269--27806763 Score: 401
Period size: 158 Copynumber: 3.1 Consensus size: 157
27806259 TGCTTAGACA
* * * * * * *
27806269 TGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGTGTACTGGTGCTCAACCGACCAAA
1 TGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGACCAGA
* * * * * ** * * *
27806334 GAGGGCAGAATGCTCAAGCCGGGGA-CCGACCCGGTCCCCCCCCGTGGGCTATCGATCTTGCTAT
66 GA-GGCAGAATGCGCAAGCCGAGGATCAG-CCTGGT-CCCCTCTATGTGCTATCGATCCTGCTGT
* * * *
27806398 CGCAACCCTCA-ATCTGGTCCGATCTTAGAC
128 CGCAACCCT-AGGTCCGGTCTGATCTTAAAC
* * * * *
27806428 TAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGAGCTGAGCCGATCAG
1 T-GGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGACCAG
* * * * * * ** * *
27806493 AGAGGCATAATGTGCAAGTCGAGGGTCGGCCTGGTCCCCTCTGTGTGCTATCGATCCCACTGCCA
65 AGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCTCTATGTGCTATCGATCCTGCTGTCG
* * **
27806558 CAACCCTCGGTCC-GACTGGGGCTTAGATA-
130 CAACCCTAGGTCCGGTCT-GATCTTA-A-AC
* * * * *
27806587 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCC-AGCCGG
1 TGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGA-CCAG
* *
27806651 AGAGGTAGAATGCGCAAGCCG-GAGATCAGCCTGGTTCCCCT-TATGTGCTACCGATCCTGCTGT
65 AGAGGCAGAATGCGCAAGCCGAG-GATCAGCCTGG-TCCCCTCTATGTGCTATCGATCCTGCTGT
27806714 CGCAACCCTAGGTCCGGTCTGATCTTAAAC
128 CGCAACCCTAGGTCCGGTCTGATCTTAAAC
*
27806744 TGGGAATAAACTTCATATGC
1 T-GGAATGAACTTCATATGC
27806764 TTAGACTAGG
Statistics
Matches: 260, Mismatches: 64, Indels: 25
0.74 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 163 0.63
159 32 0.12
160 58 0.22
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
TGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGACCAGA
GAGGCAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCTCTATGTGCTATCGATCCTGCTGTCGC
AACCCTAGGTCCGGTCTGATCTTAAAC
Found at i:27807209 original size:354 final size:355
Alignment explanation
Indices: 27806552--27807230 Score: 783
Period size: 354 Copynumber: 1.9 Consensus size: 355
27806542 ATCGATCCCA
* *
27806552 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * * * *
27806617 CATGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGTAGAATGCGCAAGCCGGAGATCAGCC
66 AATGAAACAAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGGAGATCAACC
* * ** ** * *
27806682 TGGTTCCCCTTATGTGCTACCGATCCTGCTGTCGCAACCCTAGGTCCGGTCTGATCTTAAACTGG
131 TGGTCCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTAGGTCCAGTCTGATCATAAACTGG
* * *
27806747 GAATAAACTTCATATGCTTAGACTAGGGACGAACTCCGTATGCCTAAGCCAACCCACAAAATGAG
196 GAATAAACTTCATATGCTTAGACTAGGAACGAACTCCGTATGCCAAAGCCAACCCACAAAACGAG
* * * * * *
27806812 CATGCAGATGCTTAGCCGGCTAGAAAGGCATAATACGCAAGCCGAGGA-TCATCCCGGTCCCCCT
261 CATGCAGACGCTCAGCCGGCTAGAAAGGCAGAATACACAAGCCGAGGACT-AGCCCGATCCCCCT
27806876 GTGCGTGCTGTCGATCTCACTGCCGGTCCTG
325 GTGCGTGCTGTCGATCTCACTGCCGGTCCTG
* *
27806907 CTGCCACAACCCTCAGTCC-AGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCAGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * *
27806971 CAATGAAACAAGTGTACGGGTGCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGTC-GAGGATCAA
65 CAATGAAACAAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGGA-GATCAA
* * ** * * *
27807035 TC-GGTCCCCCCTGCATGCTGTCGATCCTGTTACCGCAACCCTCGGTCCAGTCTGATCATAGACT
129 CCTGGTCCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTAGGTCCAGTCTGATCATAAACT
* ** * **
27807099 GGGAATGAACTTTGTATGCTTAGAC-ATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAAC
194 GGGAATAAACTTCATATGCTTAGACTA-GGAACGAACTCCGTATGCCAAAGCCAACCCACAAAAC
** ** * * * * * *
27807163 GAGTGTGTGGGCGCTCAGCTGGTTGGAGAGGCAGAATGCACAAGCCGAGGACTAGCCCGATCCCC
258 GAGCATGCAGACGCTCAGCCGGCTAGAAAGGCAGAATACACAAGCCGAGGACTAGCCCGATCCCC
27807228 CTG
323 CTG
27807231 CGTATTATCA
Statistics
Matches: 264, Mismatches: 56, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
353 1 0.00
354 154 0.58
355 109 0.41
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (355 bp):
CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
AATGAAACAAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGGAGATCAACC
TGGTCCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTAGGTCCAGTCTGATCATAAACTGG
GAATAAACTTCATATGCTTAGACTAGGAACGAACTCCGTATGCCAAAGCCAACCCACAAAACGAG
CATGCAGACGCTCAGCCGGCTAGAAAGGCAGAATACACAAGCCGAGGACTAGCCCGATCCCCCTG
TGCGTGCTGTCGATCTCACTGCCGGTCCTG
Found at i:27807254 original size:183 final size:183
Alignment explanation
Indices: 27806933--27807366 Score: 480
Period size: 183 Copynumber: 2.4 Consensus size: 183
27806923 TCCAGCTGGG
* * *
27806933 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAACAAGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
* * * * * * *
27806998 TCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCAATCGGTCCCCCCTGCATGCTGTCGATCCT
66 TCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCAACCGATCCCCCCTGCATACTATCAATCCT
* * * ***
27807063 GTTACCGCAACCCTCGGTCCAGTCTGATCATAGACTGGGAATGAACTTTGTAT
131 GCTACCGCAACCCTCGATCCAGTCTGATCATAGACTGAGAATGAACTCCCTAT
* * **
27807116 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
** * * * *
27807181 -CTGGTTGGAGAGGCAGAATGCACAAGCCGAGGA-CTAGCCCGAT-CCCCCTGCGTATTATCAAT
66 TC-GGCCGAAGAGGCAGAATGCACAAGCCGAGGATC-A-ACCGATCCCCCCTGCATACTATCAAT
** * *
27807243 CCTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGATTGAGAATGAACTCCCTAT
128 CCTGCTACCGCAACCCTCGATCCAGTCTGATCATAGACTGAGAATGAACTCCCTAT
* * * * * *
27807299 GCTTAGAC-TAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACACTCA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCA
27807363 GTCG
65 GTCG
27807367 ACCAGAAAGA
Statistics
Matches: 206, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
182 3 0.01
183 199 0.97
184 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
TCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCAACCGATCCCCCCTGCATACTATCAATCCT
GCTACCGCAACCCTCGATCCAGTCTGATCATAGACTGAGAATGAACTCCCTAT
Found at i:27808353 original size:26 final size:26
Alignment explanation
Indices: 27808313--27808364 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27808303 CAGTTCGATG
27808313 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
27808339 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
27808365 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:27809056 original size:26 final size:26
Alignment explanation
Indices: 27809020--27809072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27809010 CCAGTCTGTT
*
27809020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27809046 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27809072 C
1 C
27809073 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27809779 original size:26 final size:26
Alignment explanation
Indices: 27809741--27809793 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27809731 GGCTGAAACT
27809741 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27809767 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27809793 C
1 C
27809794 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27815228 original size:26 final size:26
Alignment explanation
Indices: 27815190--27815242 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27815180 CCGGTCCGAT
27815190 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
27815216 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
27815242 C
1 C
27815243 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27816109 original size:26 final size:26
Alignment explanation
Indices: 27816071--27816123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27816061 CCGGTCTGAT
*
27816071 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27816097 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27816123 C
1 C
27816124 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27816296 original size:26 final size:26
Alignment explanation
Indices: 27816267--27816319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27816257 CTGATCCGAT
*
27816267 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27816293 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27816319 C
1 C
27816320 CCAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27816313 original size:196 final size:195
Alignment explanation
Indices: 27815901--27816685 Score: 916
Period size: 196 Copynumber: 4.0 Consensus size: 195
27815891 TCCGACTGGG
* *
27815901 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTAC-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTACTGGG-GCTCA
*
27815965 ACCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCCCTGCGTGCTGTCAATC
65 ACCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCCTGCGTGCTGTCAATC
* * * * * * *
27816029 CTGCTACTAGTCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGT
129 CTGCTGCTGGTCCTACTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
27816094 AT
194 AT
* * ***
27816096 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCTGGTGCTTGG
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTACTGGGGCTCAA
* * * * * *
27816161 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCTACCTTGCGTGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATC-CCCCTGCGTGCTGTCAATCC
* * * * *
27816226 TGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTA
130 TGCTGCTGGTCCTACTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
27816291 T
195 T
* * * *
27816292 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCAAACCCATC-AAACCAGTGT-GTGGCGGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCA-CGAAACGAGCGTACTGG-GGCTC
** * ** * * * * *
27816355 AACCGGCCGAAGAGGTAGAACACGCAAGTCAGGGATCAACCCGATACCCCCTACGTGCTATCGAT
64 AACCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCCTGCGTGCTGTCAAT
* * * *
27816420 CCTGCTGCTGGTCCTACTGCCGAAACCCTCGGTCCGATCTGATCTTAGGCTGGGAATGAACTCCA
128 CCTGCTGCTGGTCCTACTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
27816485 TAT
193 TAT
* *
27816488 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTAC-GAGGGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTACTG-GGGCTCA
* * * * *
27816552 ACCG-GCTGAAGAGGTAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCTTGCGTGCTGTCAAT
65 ACCGATC-GAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-TGCGTGCTGTCAAT
* * * * * * * *
27816616 CCTGCTGCTGGTCCTGCTATCGAAACCCTCAGTCTGGTCCAATCTTAGATTGGAAATGAACTCCG
128 CCTGCTGCTGGTCCTACTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
27816681 TAT
193 TAT
27816684 GC
1 GC
27816686 CTAAGCCAAC
Statistics
Matches: 499, Mismatches: 80, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
195 105 0.21
196 391 0.78
197 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTACTGGGGCTCAA
CCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTGCGTGCTGTCAATCCT
GCTGCTGGTCCTACTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:27816491 original size:392 final size:390
Alignment explanation
Indices: 27815901--27816685 Score: 1029
Period size: 392 Copynumber: 2.0 Consensus size: 390
27815891 TCCGACTGGG
* * **
27815901 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCAAACCCACGAAACCAGCGTA-GGGCGCTCAA
* ** * * * *
27815966 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTGCGTGCTGTCAATCCT
65 CCGACCGAAGAGGCAGAACACGCAAGCCAGGGATCAACCCGATCCCCCTACGTGCTATCAATCCT
* * * *
27816031 GCTACTAGTCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
130 GCTACTAGTCCTACTACCGAAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATAT
* * * **
27816096 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCTG-GTGCTTG
195 GCTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTAC-GAGGGCTCA
* * * * * * *
27816160 GCC-GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCTACCTTGCGTGCTGTCGAT
259 ACCGGCT-GAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCACCTTGCGTGCTGTCAAT
* * * * * *
27816224 CCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTG
323 CCTGCTGCTGGTCCTGCTACCGAAACCCTCAGTCTGATCCAATCTTAGACTGGAAATGAACTCCG
27816289 TAT
388 TAT
*
27816292 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCAAACCCATC-AAACCAGTGT-GTGGCGGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCAAACCCA-CGAAACCAGCGTAG-GGC-GCTC
* * * *
27816355 AACCGGCCGAAGAGGTAGAACACGCAAGTCAGGGATCAACCCGATACCCCCTACGTGCTATCGAT
63 AACCGACCGAAGAGGCAGAACACGCAAGCCAGGGATCAACCCGAT-CCCCCTACGTGCTATCAAT
* * * * *
27816420 CCTGCTGCTGGTCCTACTGCCGAAACCCTCGGTCCGATCTGATCTTAGGCTGGGAATGAACTCCA
127 CCTGCTACTAGTCCTACTACCGAAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCA
*
27816485 TATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGAGGGCT
192 TATGCTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTACGAGGGCT
* * *
27816550 CAACCGGCTGAAGAGGTAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCTTGCGTGCTGTCAA
257 CAACCGGCTGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCACCTTGCGTGCTGTCAA
* * *
27816615 TCCTGCTGCTGGTCCTGCTATCGAAACCCTCAGTCTGGTCCAATCTTAGATTGGAAATGAACTCC
322 TCCTGCTGCTGGTCCTGCTACCGAAACCCTCAGTCTGATCCAATCTTAGACTGGAAATGAACTCC
27816680 GTAT
387 GTAT
27816684 GC
1 GC
27816686 CTAAGCCAAC
Statistics
Matches: 338, Mismatches: 50, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
389 1 0.00
390 3 0.01
391 88 0.26
392 244 0.72
393 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (390 bp):
GCTTAGACATGGAATGAACTCCGTATGCCCAAGCAAACCCACGAAACCAGCGTAGGGCGCTCAAC
CGACCGAAGAGGCAGAACACGCAAGCCAGGGATCAACCCGATCCCCCTACGTGCTATCAATCCTG
CTACTAGTCCTACTACCGAAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATG
CTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTACGAGGGCTCAAC
CGGCTGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCACCTTGCGTGCTGTCAATCCT
GCTGCTGGTCCTGCTACCGAAACCCTCAGTCTGATCCAATCTTAGACTGGAAATGAACTCCGTAT
Found at i:27817736 original size:26 final size:26
Alignment explanation
Indices: 27817698--27817750 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27817688 GGCTCAAACT
27817698 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27817724 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27817750 C
1 C
27817751 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27817917 original size:26 final size:26
Alignment explanation
Indices: 27817881--27817933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27817871 TCGATTTGAT
27817881 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27817907 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27817933 C
1 C
27817934 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27818193 original size:171 final size:171
Alignment explanation
Indices: 27817998--27818378 Score: 457
Period size: 171 Copynumber: 2.2 Consensus size: 171
27817988 TTGTGAAAGT
* ** * *
27817998 CGGGGATCAGCTCGATCCCCCTCTGTGTGCTG-CTGATCTTGCTACCGGTCTTGCTACCACAACC
1 CGGGGATCAGCTCGATCCCCCTCTGCGTGCTGTC-GATCCCGCTACCAGTCCTGCTACCACAACC
* * * * * * *
27818062 CTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAG
65 CTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGAA
** * *
27818127 CGTGCTA-GCACTCAATTGATCGGAGAGGTAGAATGCGTAAGC
130 CGTGC-AGGCACTCAACCGATCGGAGAGGAAGAATGCGCAAGC
* *
27818169 CGGGGAT-AGGCTCGATCTCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTCCTGCTACCACAACC
1 CGGGGATCA-GCTCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACCAGTCCTGCTACCACAACC
*
27818233 CTCGATCTGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGAA
65 CTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGAA
* *
27818298 CGTGCAGGCGCTCAGCCGATCGGAGAGGAAGAATGCGCAAGC
130 CGTGCAGGCACTCAACCGATCGGAGAGGAAGAATGCGCAAGC
** * *
27818340 TAGGGATCGGC-CTGGTCCCCC-CTTGCGTGCTGTCGATCC
1 CGGGGATCAGCTC-GATCCCCCTC-TGCGTGCTGTCGATCC
27818379 TGCTGTTGGT
Statistics
Matches: 178, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
170 4 0.02
171 173 0.97
172 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (171 bp):
CGGGGATCAGCTCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACCAGTCCTGCTACCACAACCC
TCGATCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGAAC
GTGCAGGCACTCAACCGATCGGAGAGGAAGAATGCGCAAGC
Found at i:27818449 original size:26 final size:26
Alignment explanation
Indices: 27818420--27818472 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
27818410 CTGATCCGAT
27818420 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
*
27818446 CTTAGCCATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
27818472 C
1 C
27818473 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:27818809 original size:158 final size:158
Alignment explanation
Indices: 27818445--27818911 Score: 335
Period size: 158 Copynumber: 2.9 Consensus size: 158
27818435 AACTCTGTAT
* * * * ** *** *
27818445 GCTTAGCCATGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAATGAGCGTGTGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACAGGCACTCAG
** * * * * * * **
27818510 CCGAGTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCCAGTGTGCAATCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTA-CGTGCTGTCGATC
** * ** * * * ** * *
27818575 CTACTACTGCAACCTTCAGTCGGGTTCGA
130 CCGCTGCCACAACCCTCGGTCTGACTGGG
* * ** *** * * * *
27818604 TCTTAAACGGGGAATGAACTTTGTATGTCTAAGTCAACCCACAAAATGAGCGTACGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACAGGCACTCAG
* * * * * * *
27818669 CCGACCGGAGAGGCATAATGCG-AAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTTTCTG-T
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCC-CTACGTGCTGTC-GAT
*
27818732 CCCGTTGCCACAACCCTCGGTCTGACTGGG
129 CCCGCTGCCACAACCCTCGGTCTGACTGGG
** * * * * *
27818762 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAATGGGTGTGCAGGCGCTCCG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACAGGCACTCAG
* **
27818827 CCGGCCGGAGAGGCAGAATGCGCAAGTTAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
*
27818892 TGCTGCCACAACCCTCGGTC
131 CGCTGCCACAACCCTCGGTC
27818912 CGGTCTGATC
Statistics
Matches: 237, Mismatches: 67, Indels: 9
0.76 0.21 0.03
Matches are distributed among these distances:
157 1 0.00
158 146 0.62
159 90 0.38
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACAGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCTGACTGGG
Found at i:27818953 original size:26 final size:26
Alignment explanation
Indices: 27818924--27818973 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
27818914 GTCTGATCTT
27818924 AGACTAGGAATGAACTCCGTATGCTG
1 AGACTAGGAATGAACTCCGTATGCTG
* *
27818950 AGACTGGGGATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
27818974 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTG
Found at i:27819682 original size:26 final size:26
Alignment explanation
Indices: 27819644--27819696 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27819634 GGCTCAAAAT
*
27819644 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27819670 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27819696 C
1 C
27819697 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27820167 original size:276 final size:274
Alignment explanation
Indices: 27819669--27820168 Score: 621
Period size: 276 Copynumber: 1.8 Consensus size: 274
27819659 AACTCCTTAT
* *
27819669 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCAGGCGCTCAA
* * * *
27819734 CCGACTGGAGATGCAGAATGCTCAAGCCGGGGATCGGCCCAATCCCCCTACATGCTGTCGATCCT
66 CCGACTGAAAAGGCAGAATGCTCAAGCCGGGGATCGACCCAATCCCCCTACATGCTGTCGATCCT
* * * *
27819799 ACTGCCACAACCCTCGATCTGATCTGATCTTACACTGGGAATGAATTTCGTATGCATAAGTCAAC
131 ACTACCACAACCCTCGATCTGATCTGATCTTACACTAGGAATGAATCTCATATGCATAAGTCAAC
*
27819864 CCAGGAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGTAAGCTGAAGATCGAC
196 CCAGGAAACGAGCGTACGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGTAAGCTGAAGATCGAC
27819929 CCGATCCGGCTGGA
261 CCGATCCGGCTGGA
** * * ** *
27819943 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCAATGAAACGAGTGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCAGGCGCTCAA
* * * ** * *
27820008 CTGGCTGAAAAGGCAGAATGCGT-AAGCCGGGGATCGACTCGGTCCCCCCCTGCGTGCTGTCGAT
66 CCGACTGAAAAGGCAGAATGC-TCAAGCCGGGGATCGACCCAAT--CCCCCTACATGCTGTCGAT
* *** * *
27820072 CCTGCTACTGTAACCCTC-AGTCTGGT-TCGATCTTAGACTAGGAATGAA-CTCTATATGCATAA
128 CCTACTACCACAACCCTCGA-TCTGATCT-GATCTTACACTAGGAATGAATCTC-ATATGCATAA
* *
27820134 GTCAACCCATGAAACGAGCGTACGGGTGCTGAGCC
190 GTCAACCCAGGAAACGAGCGTACGGGCGCTGAGCC
27820169 AGCCAAAGAG
Statistics
Matches: 187, Mismatches: 33, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
274 88 0.47
275 5 0.03
276 94 0.50
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (274 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCAGGCGCTCAA
CCGACTGAAAAGGCAGAATGCTCAAGCCGGGGATCGACCCAATCCCCCTACATGCTGTCGATCCT
ACTACCACAACCCTCGATCTGATCTGATCTTACACTAGGAATGAATCTCATATGCATAAGTCAAC
CCAGGAAACGAGCGTACGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGTAAGCTGAAGATCGAC
CCGATCCGGCTGGA
Found at i:27820352 original size:159 final size:159
Alignment explanation
Indices: 27819933--27820373 Score: 436
Period size: 159 Copynumber: 2.8 Consensus size: 159
27819923 ATCGACCCGA
* * * *
27819933 TCCGGCTGGAGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCAATGAAACGAGTGTGT
1 TCCGGCTGGAGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGT
** * * * * * *
27819998 GGGTGCTCAACTGGCTGAAAAGGCAGAATGCGTAAGCCGGGGATCGACTCGGTCCCCCCCTGCGT
66 GGGTGCTCAACCAGCCGAAGAGGTAGAATACGCAAGCCGGGGATCGACTCGGTCCCCCCCTGCAT
***
27820063 GCTGTCGATCCTGCTACTGTAACCCTCAG
131 GCTGTCGATCCTGCTACCACAACCCTCAG
* * * * * * *
27820092 TCTGGTTCGATCTTAGAC-TAGGAATGAACTCTATATGCATAAGTCAACCCATGAAACGAGCGTA
1 TCCGGCTGGAGCTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTG
* * * * * * * *
27820156 CGGGTGCTGAGCCAGCCAAAGAGGTATAACACGCAAGCCGAGGATCGAC-CTGGTCCCCCTCTGC
65 TGGGTGCTCAACCAGCCGAAGAGGTAGAATACGCAAGCCGGGGATCGACTC-GGTCCCCCCCTGC
* *
27820220 ATGCTGTCGGTCCTGCTGCCACAACCCTCAG
129 ATGCTGTCGATCCTGCTACCACAACCCTCAG
* ** * *
27820251 TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGT
1 TCCGGCTGGAGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGT
** * * * * * * *
27820316 GGGCACTCAACCAACCGGAGAGGTAGATTACACAAGCTGGGGATCGGCTCGATCCCCC
66 GGGTGCTCAACCAGCCGAAGAGGTAGAATACGCAAGCCGGGGATCGACTCGGTCCCCC
27820374 TTACGTGCTG
Statistics
Matches: 218, Mismatches: 60, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
158 2 0.01
159 214 0.98
160 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
TCCGGCTGGAGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGT
GGGTGCTCAACCAGCCGAAGAGGTAGAATACGCAAGCCGGGGATCGACTCGGTCCCCCCCTGCAT
GCTGTCGATCCTGCTACCACAACCCTCAG
Found at i:27820449 original size:26 final size:26
Alignment explanation
Indices: 27820420--27820472 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27820410 TCGATCTGAT
27820420 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
27820446 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
27820472 C
1 C
27820473 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:27822062 original size:26 final size:26
Alignment explanation
Indices: 27822011--27822063 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
27822001 CCGGTTCGAT
* *
27822011 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27822037 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCCATATG
27822063 C
1 C
27822064 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27822919 original size:26 final size:26
Alignment explanation
Indices: 27822890--27822942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27822880 CCGGTCTGAT
*
27822890 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27822916 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27822942 C
1 C
27822943 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27823651 original size:26 final size:26
Alignment explanation
Indices: 27823613--27823665 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27823603 GGCTCAAAAA
*
27823613 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
27823639 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCATATG
27823665 C
1 C
27823666 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:27824138 original size:26 final size:26
Alignment explanation
Indices: 27824102--27824154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27824092 CCGATCCGAT
*
27824102 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27824128 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27824154 C
1 C
27824155 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27824683 original size:155 final size:154
Alignment explanation
Indices: 27824400--27824712 Score: 437
Period size: 155 Copynumber: 2.0 Consensus size: 154
27824390 CGATCTTAGA
* *
27824400 CTGGGAATGAGCTTCGTATGCTTAGGCTGAGGATGAACTCTGTATGCCTAAGTCAACCCACAAAA
1 CTGGGAATGAACTCCGTATGCTTAGGCTGAGGATGAACTCTGTATGCCTAAGTCAACCCACAAAA
* *
27824465 CGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCAGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGACCAGGTCCC
* *
27824530 TCCCTGCGTGCTATCGATCCTGCTG
131 -CCCTACGTGCTATCGATCCTACTG
* ** *
27824555 CTGGGAATGAACTCCGTATGCTTAGGCTGGGGATGAACTCTGTATGCCTAAGTCAATGCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGGCTGAGGATGAACTCTGTATGCCTAAGTCAACCCACAAAA
* * * * * * * * * *
27824620 TGAGTGTGCGGGCGCTCAGTCGGCTGGATAGGTAGAATGCGCAAGCCGGAGATCGGCCCGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGACCAGGTCCC
27824685 CCCTACGTGCTATCGATCCTACTG
131 CCCTACGTGCTATCGATCCTACTG
27824709 CTGG
1 CTGG
27824713 CCCCACTGTC
Statistics
Matches: 138, Mismatches: 20, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
154 26 0.19
155 112 0.81
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.21
Consensus pattern (154 bp):
CTGGGAATGAACTCCGTATGCTTAGGCTGAGGATGAACTCTGTATGCCTAAGTCAACCCACAAAA
CGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGACCAGGTCCC
CCCTACGTGCTATCGATCCTACTG
Found at i:27825116 original size:159 final size:158
Alignment explanation
Indices: 27824770--27825271 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 158
27824760 AACTCTATAT
* * * * *
27824770 GCTTAGACATGGAATGAACTCTGTGTGCCTAGGCCAACCCATAGAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
** * * * ***
27824835 CCGGTCGAAAAGGCAGAATGCCCAAGCCGGGGATCGACCTGGTCCCCCCTACGTGCTGTTGATCC
66 CAAGTCGAAAAGGCAGAATGCCCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCC
* * * *
27824900 TGTTGCCGTAACCCTCAGTCCGATTCGA
131 CGCTGCCGCAACCCTCAATCCGATTCGA
* * * * *
27824928 TCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACCAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAGGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * ** *
27824992 GTAAGTCGAAGAGGCATAATGCGTAAGTCAGGGATCGACCCGATCCCCCTCTACGTGCTGCCAAT
65 GCAAGTCGAAAAGGCAGAATGCCCAAGCCAGGGATCGACCCGATCCCCC-CTACGTGCTGCCAAT
* *
27825057 CCCGCTGCCGCAACCCTCAATCCGATTGGG
129 CCCGCTGCCGCAACCCTCAATCCGATTCGA
* * * * *
27825087 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGAGTGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
** * * * * ** * * * *
27825152 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGAT-CCCCCTGCGTGCTGTCGATCC
66 CAAGTCGAAAAGGCAGAATGCCCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCC
* * * * * * *
27825216 TGCAGTCGCAACCCTCAGTTCGGTTTGA
131 CGCTGCCGCAACCCTCAATCCGATTCGA
*
27825244 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
27825272 TTAGACTGAG
Statistics
Matches: 277, Mismatches: 63, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
156 1 0.00
157 59 0.21
158 94 0.34
159 122 0.44
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CAAGTCGAAAAGGCAGAATGCCCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCC
CGCTGCCGCAACCCTCAATCCGATTCGA
Found at i:27825286 original size:26 final size:26
Alignment explanation
Indices: 27825245--27825297 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27825235 TCGGTTTGAT
27825245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27825271 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
27825297 C
1 C
27825298 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27826405 original size:26 final size:26
Alignment explanation
Indices: 27826369--27826421 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27826359 CTGGTCCAAT
27826369 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27826395 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27826421 C
1 C
27826422 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27827469 original size:26 final size:26
Alignment explanation
Indices: 27827433--27827485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27827423 CCGGTCTGAT
*
27827433 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27827459 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27827485 C
1 C
27827486 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27827955 original size:159 final size:158
Alignment explanation
Indices: 27827654--27828156 Score: 415
Period size: 159 Copynumber: 3.2 Consensus size: 158
27827644 ACTCTGTATG
* ** * * ** *
27827654 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
** * * * *** * * *
27827718 CCAATCGGAGAGGCAGAATACGTAAGCCGGGGACCAGTTTGGTCCCTCCCTACGTGCTGTC-GAT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCT-CCTGCATGCTG-CAGAT
* * *
27827782 CCTACTA-CCGCAACCCTCGGTCTGGTCTAAT
128 CCCAC-AGCCACAACCCTCGGTCTGGTCTGAT
* * * * * ** *
27827813 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAATGAGCATTCGGGCGTTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATACGGGCACTCAGC
* * * * * *
27827878 CGGTTGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCTCTCTGCATGCTGCCAG-TC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTC-CTGCATGCTG-CAGATC
* **
27827942 CCACAGCCACAACCCTCAGTCTGG-CTGGGG
129 CCACAGCCACAACCCTCGGTCTGGTCT-GAT
* * * *
27827972 CTTAGAC-ATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
* * *
27828036 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCTGCGTGCTGCTGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCTGCATGCTGCAGATCC
** * ** * *
27828101 TGCTGCCGTAACCCTTGGTCCGGTCTGAT
130 CACAGCCACAACCCTCGGTCTGGTCTGAT
27828130 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
27828157 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 63, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 57 0.21
159 211 0.78
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATACGGGCACTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCTGCATGCTGCAGATCCC
ACAGCCACAACCCTCGGTCTGGTCTGAT
Found at i:27828182 original size:26 final size:26
Alignment explanation
Indices: 27828130--27828182 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27828120 CCGGTCTGAT
* *
27828130 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGCATG
* *
27828156 CTTAGACTGGGGATGAACTCAGCATG
1 CTTAGACTAGGAATGAACTCAGCATG
27828182 C
1 C
27828183 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGCATG
Found at i:27828595 original size:26 final size:26
Alignment explanation
Indices: 27828559--27828611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27828549 CTGGTCCAAT
*
27828559 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27828585 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27828611 C
1 C
27828612 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27829673 original size:26 final size:26
Alignment explanation
Indices: 27829622--27829674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27829612 CTGGTCCGAT
* *
27829622 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27829648 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27829674 C
1 C
27829675 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27829869 original size:26 final size:26
Alignment explanation
Indices: 27829830--27829885 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
27829820 CCGGTTCGAT
27829830 CTTAGACTGTGAATGAACTCCATACG
1 CTTAGACTGTGAATGAACTCCATACG
* *
27829856 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCATACG
27829882 CTTA
1 CTTA
27829886 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCATACG
Found at i:27830360 original size:26 final size:26
Alignment explanation
Indices: 27830331--27830383 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27830321 CCGATCTGAT
27830331 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27830357 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27830383 C
1 C
27830384 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27831424 original size:26 final size:26
Alignment explanation
Indices: 27831395--27831473 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
27831385 CCGGTCCAAT
* *
27831395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGTATGAACTCCATATG
27831421 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGTATGAACTCCATATG
27831447 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGTATGAACTCCATATG
27831473 C
1 C
27831474 CTAAGTCAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGTATGAACTCCATATG
Found at i:27832173 original size:26 final size:26
Alignment explanation
Indices: 27832137--27832188 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27832127 GCTCAAACTA
* *
27832137 TTAGACTTGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGGATGC
27832163 TTAGACATGGAATGAACTCCGGATGC
1 TTAGACATGGAATGAACTCCGGATGC
27832189 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGGATGC
Found at i:27832514 original size:26 final size:26
Alignment explanation
Indices: 27832478--27832530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27832468 CTGGTCTGAT
*
27832478 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27832504 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27832530 C
1 C
27832531 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27833175 original size:158 final size:156
Alignment explanation
Indices: 27832653--27833175 Score: 468
Period size: 158 Copynumber: 3.3 Consensus size: 156
27832643 CCTGCTACCG
27832653 CAACCCTCAGTCTC-ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
1 CAACCCTCAGTC-CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* * * * * * **
27832717 AATGAGCATATGGGCGCTCAACCAG-TCGAAGAGGCAGAATGCGCAAGCTGGGGA-CCGATTTGG
65 AACGAGCGTACGGGCGCTCAGCCAGCT-GGAGAGGCAAAATGCGCAAGC-GGGGATCCG-TCCGG
* * *
27832780 TCCCCCCTTCGTGCTGTCGATCCTGCTGTCG
127 T-CCCCCTGCATGCTGTCGATCCTGCTGTCA
* * *
27832811 CAACCCTC-GATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 CAACCCTCAG-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* * * * * * * * * * * *
27832875 AACTAGCGTTCGAGCGTTGAGCCAACCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATC
65 AACGAGCGTACGGGCGCTCAGCCAGCTGGAGAGGCAAAATGCGCAAG-CGGGGATCCGTCCGGTC
* * * * *
27832940 ACCCTCTGTATGCTGCCAAT-TTCGCTGCCA
129 -CCC-CTGCATGCTGTCGATCCT-GCTGTCA
* * **
27832970 CAACCTTAAGTCCGA-CTAGGGCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCAC
1 CAACCCTCAGTCCGATCT-GATCTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGCCAACCCAC
* * * * * *
27833032 AAAACGGGCGTGCGGGCGCTCAGTCGGCTGGAGAGGCAAAATGCGCAAGTCGGAGATCTGTCCGG
63 AAAACGAGCGTACGGGCGCTCAGCCAGCTGGAGAGGCAAAATGCGCAAG-CGGGGATCCGTCCGG
* *
27833097 TCCCTCCTGCATCCTGTCGATCCTACTGTCA
127 TCCC-CCTGCATGCTGTCGATCCTGCTGTCA
27833128 CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
27833176 TTAGATTGGG
Statistics
Matches: 283, Mismatches: 65, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
157 4 0.01
158 158 0.56
159 118 0.42
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (156 bp):
CAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
ACGAGCGTACGGGCGCTCAGCCAGCTGGAGAGGCAAAATGCGCAAGCGGGGATCCGTCCGGTCCC
CCTGCATGCTGTCGATCCTGCTGTCA
Found at i:27833178 original size:26 final size:26
Alignment explanation
Indices: 27833149--27833201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27833139 CCGATCTGAT
27833149 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
27833175 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27833201 C
1 C
27833202 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27833654 original size:26 final size:26
Alignment explanation
Indices: 27833616--27833668 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27833606 GGCTTAAACT
27833616 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27833642 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27833668 C
1 C
27833669 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.