Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 293 of 402
Found at i:27833994 original size:26 final size:26
Alignment explanation
Indices: 27833958--27834013 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
27833948 CTGGTTCGAT
*
27833958 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27833984 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27834010 CTTA
1 CTTA
27834014 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27834690 original size:26 final size:26
Alignment explanation
Indices: 27834649--27834701 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27834639 CCGATCCGAT
27834649 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
* * * *
27834675 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
27834701 C
1 C
27834702 CTAAGGCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:27835079 original size:26 final size:26
Alignment explanation
Indices: 27835029--27835081 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27835019 CCAGTCTGAT
**
27835029 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27835055 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27835081 C
1 C
27835082 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27835345 original size:159 final size:159
Alignment explanation
Indices: 27835055--27835463 Score: 355
Period size: 159 Copynumber: 2.6 Consensus size: 159
27835045 ACTTTGTATG
* * *
27835055 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAGC
* * * * * * *
27835120 TAGTCGGAGAGGTAGAATGCGTAAGTCGGGGACCAACCCGGTCACCCCCTGCATGCAGTCGATCC
66 CAGTCGGAGAGGCAGAATGCGCAAGTCGAGGACCAACCCGATCACCCCCTACATGCAGCCGATCC
*
27835185 TGCTGCCGCAACCCTCAAATTGATTCAAT
131 TGCTGCCACAACCCTCAAATTGATTCAAT
* * *
27835214 CTTAGAC-TGGGAATGAAC-CCTGTATGCCTAAGTCAACCCCCGAAATGAGCATGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCC-GTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGA
* * * * *
27835277 GCCGGTCGGAGAGGCATAATGCGCAAG-CTGAGGATCGACCCGATC-CCCCTCTACGTGCTA-CC
64 GCCAGTCGGAGAGGCAGAATGCGCAAGTC-GAGGACCAACCCGATCACCCC-CTACATGC-AGCC
* * * ** ****
27835339 GGTCCTGCTTCCACAACCCTC-AATCCGGCTGGGG
126 GATCCTGCTGCCACAACCCTCAAAT-TGATTCAAT
** * * * * * *
27835373 CTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCATGAAA-TAGGCGTTCGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCATGCGGGCGCTGAG
* * *
27835437 CCGGCCGGAGAGGCAGAATGCGAAAGT
65 CCAGTCGGAGAGGCAGAATGCGCAAGT
27835464 TGGGGATCGG
Statistics
Matches: 199, Mismatches: 41, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
158 12 0.06
159 183 0.92
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAGC
CAGTCGGAGAGGCAGAATGCGCAAGTCGAGGACCAACCCGATCACCCCCTACATGCAGCCGATCC
TGCTGCCACAACCCTCAAATTGATTCAAT
Found at i:27836781 original size:26 final size:26
Alignment explanation
Indices: 27836752--27836804 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27836742 CCGGTCTGAT
27836752 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27836778 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27836804 C
1 C
27836805 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27838077 original size:26 final size:26
Alignment explanation
Indices: 27838039--27838091 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27838029 GGCTCAAAAT
27838039 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27838065 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27838091 C
1 C
27838092 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27838477 original size:159 final size:158
Alignment explanation
Indices: 27838064--27838496 Score: 412
Period size: 159 Copynumber: 2.7 Consensus size: 158
27838054 AACTCCGTAT
* *
27838064 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGAGCGTGCGGTCGCTCAG
* *
27838129 CCGATCGGAGAGGCAGAATGCGTAAGCTGGAGATCGGCCCGATCCCCCCTTACGTGCTGTCGATC
65 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTTACGTGCTGTCGATC
* ** *** *
27838194 CTACTGCTGCAACCCTCAATCCGGTTTGA
130 CCACTGCCACAACCCTCAATCCAACTGGA
* * * ** * *
27838223 TCTTAGACTAAGG-ATGAACTCCGTATGCATAAATCAATCCATGAAACGAGCGTGCGGGT-GCTG
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGAGCGTGC-GGTCGCTC
* * * * * *
27838286 AGCCGATCGAAGAGGAATAATGTGCAAGCCGGGGATCGGCCCGAT-CCCCCTCTGCGTGCTGTTC
63 AGCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCT-TACGTGCTG-TC
* ** *
27838350 G-TCCCGCTGCCACAACCCTCGGTCCAACTGGG
126 GATCCCACTGCCACAACCCTCAATCCAACTGGA
* * * * *
27838382 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAACGAAATGGGCGTGCGGTCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CACGAAACGAGCGTGCGGTCGCTCAG
* *
27838447 CC-ATCCGGAGAGGC-GAAATGCGTAAGCCGGGGA-CTGGCCTGGTCCCCCCT
65 CCGAT-CGGAGAGGCAG-AATGCGTAAGCCGGGGATC-GGCCCGATCCCCCCT
27838497 ATGTACTACC
Statistics
Matches: 215, Mismatches: 48, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
158 16 0.07
159 185 0.86
160 14 0.07
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGCGTGCGGTCGCTCAGC
CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTTACGTGCTGTCGATCC
CACTGCCACAACCCTCAATCCAACTGGA
Found at i:27839341 original size:159 final size:159
Alignment explanation
Indices: 27839178--27839574 Score: 474
Period size: 160 Copynumber: 2.5 Consensus size: 159
27839168 GAGCCAACTA
* ** * * *
27839178 GAGAGACATAATGCACAAGCTGGGGATCGATCTGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTAC
1 GAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGTCCTGCTAC
* * *
27839243 CACAACCCTCGGTCCGGCTGGGGCTTAGACACGGAATTAACTCCCTATGCCTAAGCCAACCCACG
66 CACAACCCTCGGTCCGGCAGGGGCTTAAACACGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * *
27839308 AAACGGGTGTGCGGGCACTCAGCCGG-TCG
131 AAACAGGCGTGCGAGCACTCAGCCGGCT-G
* * * * *
27839337 GAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCTTCTGCGTGCTGCCGGTCCTGCTGC
1 GAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGTCCTGCTAC
* * * * * *
27839402 CACAACCTTTGGGTCTGGCAGGGGCTTAAACATGGAATGAACTCCCTATGCCTATGCCAACCCAT
66 CACAACC-CTCGGTCCGGCAGGGGCTTAAACACGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* **
27839467 GAAACAGGCGTGCGAGCTCTCAGTTGGCTG
130 GAAACAGGCGTGCGAGCACTCAGCCGGCTG
* * * * *
27839497 GAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGT-CCCCTCTGTATGCTGTCGATCCTACTAC
1 GAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGTCCTGCTAC
*
27839561 CGCAACCCTCGGTC
66 CACAACCCTCGGTC
27839575 TGATCCGATC
Statistics
Matches: 197, Mismatches: 39, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
158 5 0.03
159 88 0.45
160 103 0.52
161 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (159 bp):
GAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGTCCTGCTAC
CACAACCCTCGGTCCGGCAGGGGCTTAAACACGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAACAGGCGTGCGAGCACTCAGCCGGCTG
Found at i:27839613 original size:26 final size:26
Alignment explanation
Indices: 27839584--27839636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27839574 CTGATCCGAT
*
27839584 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27839610 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27839636 C
1 C
27839637 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27840336 original size:26 final size:26
Alignment explanation
Indices: 27840297--27840347 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27840287 GGTCAGATCC
27840297 TAGACTGGGAATGAACTCTATATGCT
1 TAGACTGGGAATGAACTCTATATGCT
* *
27840323 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTATATGC
27840348 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTATATGCT
Found at i:27841460 original size:159 final size:156
Alignment explanation
Indices: 27841051--27841544 Score: 504
Period size: 159 Copynumber: 3.1 Consensus size: 156
27841041 GCGTAGACAT
*
27841051 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * * * * *
27841116 AGGCAGATTGCACAAGCCGGGGATCGACCCTGTCCCCCCTTGCGTACTGTCAATCTTACTGCCAC
66 AGGCAGAATGCACAAGCCGGGGATCGGCCC-GTCCCTCC-TGCGTGCTGTCGATCCTACTGTCAC
*** * *
27841181 AACCCTCAATCTGATCTGATCTTAGACTA
129 AACCCTTGGTCCG-GCTGATCTTAGACTA
* ** * * * * * * *
27841210 GGAATGAACTCCGTATGCATAAGTGAACCCACGGAATGAGCGTGTGGGCACTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * *
27841275 AGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTCACTGCGTGCTGTCGGTCCTGCTGTCAC
66 AGGCAGAATGCACAAGCCGGGGATCGGCCCG-TCCCTC-CTGCGTGCTGTCGATCCTACTGTCAC
**
27841340 AACCCTTGGTCCGGCTGGGGCTTAGAC-A
129 AACCCTTGGTCCGGCT-GATCTTAGACTA
* * * ** * *
27841368 TGGAATGAACTCCCTATACCTAAGCCAATCCGTGAAACGGGCATGCGGGCGCTCAGCCGGTCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGA
* * * * * *
27841433 GAGGCAGAATGCACTAGCCGGGGATCGGCCCGGTTCCTCCAGCATGCTATCGATCCTACTGTCGC
65 GAGGCAGAATGCACAAGCCGGGGATCGGCCC-GTCCCTCCTGCGTGCTGTCGATCCTACTGTCAC
*
27841498 AACCCTTGGTCCGGTCTGATCTTAGACTG
129 AACCCTTGGTCCGG-CTGATCTTAGACTA
*
27841527 GGAATGAACTTCGTATGC
1 GGAATGAACTCCGTATGC
27841545 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 62, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
158 61 0.23
159 203 0.76
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCACAAGCCGGGGATCGGCCCGTCCCTCCTGCGTGCTGTCGATCCTACTGTCACAA
CCCTTGGTCCGGCTGATCTTAGACTA
Found at i:27841554 original size:26 final size:26
Alignment explanation
Indices: 27841518--27841570 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27841508 CCGGTCTGAT
*
27841518 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27841544 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27841570 C
1 C
27841571 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27842072 original size:515 final size:514
Alignment explanation
Indices: 27841201--27842133 Score: 1249
Period size: 515 Copynumber: 1.8 Consensus size: 514
27841191 CTGATCTGAT
* * * *
27841201 CTTAGACTAGGAATGAACTCCGTATGCATAAGTGAACCCACGGAATGAGCGTGTGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
* * * * **
27841266 CGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTCACTGCGTGCTGTCGGTCC
66 CGATCGAAGAGGCATAATGCACAAGCAGGGGATCGACCCGATCCCCCACTGCGTGCTACCGGTCC
* * * *
27841331 TGCTGTCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCCAAGCCAA
* * * * * * * *
27841396 TCCGTGAAACGGGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACTAGCCGGGGATCGG
196 CCCATAAAAAGGGCATGCAGGCGCTCAGCCAGTCGGAGAGGCAGAACGCACAAGCCGGGGATCGG
* * * ** * * * *
27841461 CCCGGTTCCTCCAGCATGCTATCGATCCTACTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACT
261 CCCGGGTCCCCCAGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACT
* * *
27841526 GGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
326 GGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * *
27841591 AGCATGCGGGCGCTCAGTCGACCGGAGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCCCCC
391 AGCATACGGGCGCTCAGCCGACCAGAGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCCCCC
27841656 TCTGCGTGTTGTCGATCCCGCTACCGATCCTGCTGCCATAACCCTCGGTCTGACTAGGC
456 TCTGCGTGTTGTCGATCCCGCTACCGATCCTGCTGCCATAACCCTCGGTCTGACTAGGC
* *
27841715 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
* * * ** *
27841779 CCGATCGAAGAGGCATAATGCACAAGTAGGGGATCGACTCGGTCCCCCTGTGTGTGCTACCGGTC
65 CCGATCGAAGAGGCATAATGCACAAGCAGGGGATCGACCCGATCCCCCACTGCGTGCTACCGGTC
* * * * *
27841844 CCGCTGCCACAACCCTCGGTCCGGTTGGGGGTTTAGACATGGAATTAACTCCTTATGCCCAAGCC
130 CCGCTGCCACAACCCTCGGTCCGGCT-GGGGCTTAGACATGGAATGAACTCCCTATACCCAAGCC
* * *
27841909 AACCCATAAAAAGGGCGTGCAGGCGCTCAGCCAGTCGGGGAGGCAGAACGCGCAAGCCGGGGATC
194 AACCCATAAAAAGGGCATGCAGGCGCTCAGCCAGTCGGAGAGGCAGAACGCACAAGCCGGGGATC
* * * * * *
27841974 GG-TCGGGTCCCCCTTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAG
259 GGCCCGGGTCCCCC-AGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAG
* * *
27842038 ACTGGGAATGAACTCCGTATGCTCAGATTGGGGATGAACTCTGTATGCCTAAGTCAATCCATGAA
323 ACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
**
27842103 ACGAGTGTACGGGCGCTCAGCCGACCAGAGA
388 ACGAGCATACGGGCGCTCAGCCGACCAGAGA
27842134 TGCGGGATGC
Statistics
Matches: 352, Mismatches: 64, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
513 1 0.00
514 139 0.39
515 212 0.60
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (514 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
CGATCGAAGAGGCATAATGCACAAGCAGGGGATCGACCCGATCCCCCACTGCGTGCTACCGGTCC
CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCCAAGCCAA
CCCATAAAAAGGGCATGCAGGCGCTCAGCCAGTCGGAGAGGCAGAACGCACAAGCCGGGGATCGG
CCCGGGTCCCCCAGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACT
GGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
AGCATACGGGCGCTCAGCCGACCAGAGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCCCCC
TCTGCGTGTTGTCGATCCCGCTACCGATCCTGCTGCCATAACCCTCGGTCTGACTAGGC
Found at i:27842944 original size:21 final size:21
Alignment explanation
Indices: 27842918--27842958 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
27842908 GATCCTATTG
27842918 CCACAACCCTCAGTCCAACTA
1 CCACAACCCTCAGTCCAACTA
* *
27842939 CCACAACCTTCAGTTCAACT
1 CCACAACCCTCAGTCCAACT
27842959 GGGGCTTAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.44, G:0.05, T:0.20
Consensus pattern (21 bp):
CCACAACCCTCAGTCCAACTA
Found at i:27843156 original size:26 final size:26
Alignment explanation
Indices: 27843120--27843172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27843110 TCGGTTTGAT
*
27843120 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27843146 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27843172 C
1 C
27843173 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27844394 original size:26 final size:26
Alignment explanation
Indices: 27844356--27844408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27844346 GGCTCAAAAT
27844356 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27844382 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27844408 C
1 C
27844409 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27844576 original size:26 final size:26
Alignment explanation
Indices: 27844540--27844592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27844530 CTGGTTTGAT
27844540 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27844566 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27844592 C
1 C
27844593 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27845225 original size:903 final size:902
Alignment explanation
Indices: 27843477--27845469 Score: 2791
Period size: 903 Copynumber: 2.2 Consensus size: 902
27843467 CAGCTGGGGT
* * * * **
27843477 TTAGACATGGAATGAACTCCTTATGCCCAAGCCAACCCATGAAATGGGCGCGCGGGCGA-TCAGT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGC-ACTCAG-
* * ** * * ** * * * * * * *
27843541 CGGTCGGGGAGGCAGAATACGTAAGCCGGGGATC-AGTCGGGTCCCCCTTACGTGCTGCCGATCC
64 CCGCCCAGAAGGCAGAATGCACAAGCCGAGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATCC
* * * **
27843605 TGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGG
128 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
27843670 GGATGAACTATGTGTGCCTAAGTCAACGCACGAAACGAGTGTACGGGCGCTCAGTTGACCAGAGA
193 GGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGTGTACGAGCACTCAGTCGACCAAAGA
* *
27843735 GGCGGGATGCACAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCT
258 GGCAGGATGCACAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTACATATTTCT
*
27843800 ACCATCTGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAA
323 ACCATCTCAATGCCATTTTTATGGCTTG---ATTCATACAATGGTCCCCTAAGCCTTCATGTGAA
27843865 GTTTCATGGCAAAGCAACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
385 GTTTCATGGCAAAGCAACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
* *
27843930 TTTTGAAATTTTTTTTAGAAAGATTTTTGTCCCAAATTTGGTAGAGGTGATCCTTTTATTTTTGT
450 TTTTGAAAATTTTTTTAGAAAGAGTTTTGTCCCAAATTTGGTAGAGGTGATCCTTTTATTTTTGT
* *
27843995 TCACATGCACAAAAAACTTCAGCTAAAAACTTGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAA
515 TCACATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTCAAAAA
* * * * * *
27844060 AGTGTCCCCATTTTAGACACTTTAATGGCTATTGGTAGCAAACCTATAAAATCTCAAATGCCCTT
580 AGTGTCCCCATTTCAAAAACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCCCTT
27844125 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAACTACCAG
645 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAACTACCAG
*
27844190 CACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCAATCGTCGGAACCCCCAATGCCGC
710 CACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCACAATCGTCGGAACCCCCAATGCCGC
** *
27844255 CGATTAGGCTCTCCGACGATGCTCCGGTGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCAC
775 CGATTAGGCTCTCCGACGATAATCCGATGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCAC
27844320 ATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGC
840 ATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGC
* * *
27844383 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACT-AGCGTACGGGCGCTTAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTACGGGCACTCAGC
* * * * *
27844447 TGCCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCT
65 CGCCCAGA-AGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
* * *
27844512 GCTGCCGCAACTCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
129 GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
27844577 GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGAGCACTCA-TCCGAGCAAAGA
194 GATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGTGTACGAGCACTCAGT-CGACCAAAGA
* * *
27844641 GGCAGGATGCCCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTACCTATTTCT
258 GGCAGGATGCACAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTACATATTTCT
* *
27844706 ACCGTGC-CAATGCCATTTTTATGGCTTG-TTCATACAATGGTCCCCTAAGCCTTCGTGTGAAGT
323 ACCAT-CTCAATGCCATTTTTATGGCTTGATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
* * **
27844769 TTCGTGGC-AAGACGACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATT
387 TTCATGGCAAAG-CAACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
27844833 TTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGAT-CTTTGTATTTTTT
451 TTTGAAAATTTTTTTAGAAAGAGTTTTGT-CCCAAATTTGGTAGAGGTGATCCTTT-TATTTTTG
* *
27844897 TTGC-CATGTAC-AAAAACATTCAGCTTAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTCAA
514 TT-CACATGCACAAAAAAC-TTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTCAA
*
27844960 AAAAGTGTCCCCATTTCAAAAACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT
577 AAAAGTGTCCCCATTTCAAAAACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCC
* * *
27845025 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTCC
642 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAACTAC
* * * *
27845090 CAGCACCCATCGCACATCATGTGCGCACACCCCCTGGTCCCCATAATCGTCGGAACCCCCAATGC
707 CAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCACAATCGTCGGAACCCCCAATGC
* * * * **
27845155 CGCTGGTTAGGCTCTCCGACGATAATCCGATGATGGTGCCCCTGGTGAAAAAAATGCTTCACCAG
772 CGCCGATTAGGCTCTCCGACGATAATCCGATGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAG
** *
27845220 CACATGCCCGAGCCCAGCATGTGCACTTTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATG
837 CACATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATG
27845285 C
902 C
* * *
27845286 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCC
** * * * *
27845351 GGTCAGAAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCCTGCATGCTATCGATCCTA
66 GCCCAGAAGGCAGAATGCACAAGCCGAGGATCGACCCGATCC-CCCCTGCGTGCTGTCGATCCTG
* * * * *
27845416 CTACCGCAACCCTTGATTTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
130 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
27845470 CTAAGTCAAC
Statistics
Matches: 959, Mismatches: 115, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
901 3 0.00
902 159 0.17
903 501 0.52
904 1 0.00
905 6 0.01
906 286 0.30
907 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCC
GCCCAGAAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
TGAACTACGTATGCCTAAGTCAACCCACGAAACGAGTGTACGAGCACTCAGTCGACCAAAGAGGC
AGGATGCACAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTACATATTTCTACC
ATCTCAATGCCATTTTTATGGCTTGATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCA
TGGCAAAGCAACCCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTGA
AAATTTTTTTAGAAAGAGTTTTGTCCCAAATTTGGTAGAGGTGATCCTTTTATTTTTGTTCACAT
GCACAAAAAACTTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTCAAAAAAGTGTC
CCCATTTCAAAAACTTTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCCCTTTAAGGG
GGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCA
TCGCACATCATGTGCACACACCCCCCGGCCCCCACAATCGTCGGAACCCCCAATGCCGCCGATTA
GGCTCTCCGACGATAATCCGATGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCC
GAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGC
Found at i:27845297 original size:26 final size:26
Alignment explanation
Indices: 27845259--27845311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27845249 GGCTCAAAAT
27845259 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27845285 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27845311 C
1 C
27845312 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27845615 original size:159 final size:158
Alignment explanation
Indices: 27845284--27845722 Score: 483
Period size: 159 Copynumber: 2.8 Consensus size: 158
27845274 AACTCCGTAT
* *
27845284 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * *
27845349 CCGGTCAGA-AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCCTGCATGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC-CCCCTGCATGCTACCGATC
* * * * ** *
27845413 CTACTACCGCAACCCTTGATTTGGTCTGA
130 CCACTACCACAACCCTCGAGTCCGACTGA
* * * * * *
27845442 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTACAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * ** *
27845506 GCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGTGTGCTGCCTG-
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCATGCTACC-GA
** * *
27845570 TCCCGTTGCCACAACCCTCG-GTCCGACTGGG
128 TCCCACTACCACAACCCTCGAGTCCGACT-GA
* * * *
27845601 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGA-TCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-CACTCA
* *
27845665 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCTTGCT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCT
27845723 GTCGATCTTG
Statistics
Matches: 230, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 76 0.33
159 150 0.65
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCC
CACTACCACAACCCTCGAGTCCGACTGA
Found at i:27845789 original size:26 final size:26
Alignment explanation
Indices: 27845760--27845812 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27845750 CCGGTCTGAT
*
27845760 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27845786 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27845812 C
1 C
27845813 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27845930 original size:184 final size:183
Alignment explanation
Indices: 27845601--27846070 Score: 523
Period size: 184 Copynumber: 2.6 Consensus size: 183
27845591 TCCGACTGGG
* * * * *
27845601 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGA-TC
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-CACTC
** * * * * * *
27845664 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCTTGCTGTCGAT
64 AGCCGACCAGAGAGGCAGGATGCGCAAG-CAGGGATCGACTCGATCCCCCCTACATGCTGCCGAT
* * * * **
27845729 CTTGCTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGCACTCCGTAT
128 CCTACTGTCGCAACCCTTGGTCCGGTCCGATCCTAGACTGGGAATAAACTCCGTAT
*
27845785 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * **
27845850 CCGACCAGAGAGGCAGGATGCGCAAGTCAGGGATC-AGTTGGGTCCCCTTTACATGCTGCCGATC
66 CCGACCAGAGAGGCAGGATGCGCAAG-CAGGGATCGA-CTCGATCCCCCCTACATGCTGCCGATC
* *
27845914 CTACTGTCGTAACCCTTGGTCCGGTCCGATCCTAGACTGGGAGTAAACTCCGTAT
129 CTACTGTCGCAACCCTTGGTCCGGTCCGATCCTAGACTGGGAATAAACTCCGTAT
* * ** ** * * *
27845969 GCTTAGACTGGAGATGAACTCTGTATGCCTAAGTCAATGCATTAAACGAGTGTACGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
27846034 CCGACCAGAGAGACGGGATGCGCAAGCTAGGGATCGA
66 CCGACCAGAGAGGCAGGATGCGCAAGC-AGGGATCGA
27846071 ACGGGTGGTA
Statistics
Matches: 241, Mismatches: 40, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
183 4 0.02
184 236 0.98
185 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.20
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCAGAGAGGCAGGATGCGCAAGCAGGGATCGACTCGATCCCCCCTACATGCTGCCGATCCT
ACTGTCGCAACCCTTGGTCCGGTCCGATCCTAGACTGGGAATAAACTCCGTAT
Found at i:27845975 original size:26 final size:26
Alignment explanation
Indices: 27845946--27845996 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27845936 GGTCCGATCC
27845946 TAGACTGG-GAGTAAACTCCGTATGCT
1 TAGACTGGAGA-TAAACTCCGTATGCT
* *
27845972 TAGACTGGAGATGAACTCTGTATGC
1 TAGACTGGAGATAAACTCCGTATGC
27845997 CTAAGTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGAGATAAACTCCGTATGCT
Found at i:27847555 original size:26 final size:26
Alignment explanation
Indices: 27847526--27847577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27847516 TCCGGTCCGA
27847526 TCTTAGAC-TGGGAATGAACTCCGTAT
1 TCTTAGACAT-GGAATGAACTCCGTAT
27847552 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
27847578 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:27848180 original size:26 final size:26
Alignment explanation
Indices: 27848142--27848194 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27848132 GGCTCAAAAT
27848142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27848168 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27848194 C
1 C
27848195 CTAGGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27848672 original size:26 final size:26
Alignment explanation
Indices: 27848643--27848695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27848633 CCGGTCTGAT
*
27848643 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27848669 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27848695 C
1 C
27848696 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27849313 original size:158 final size:159
Alignment explanation
Indices: 27848811--27849302 Score: 537
Period size: 159 Copynumber: 3.1 Consensus size: 159
27848801 CTGTCGATCC
* * * *
27848811 TGCTGTCGGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACAGGGAATGAACTCTGTA
1 TGCTGTCGATCCTGCTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * *
27848876 TGCCTAAGGCAACCCATGAAACGAGCGTGTGGGCGGTCAGTCGGTCGAAGAGGCAGAATGCACAA
66 TGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAA
* * *
27848941 GCCAGGGATCGACCCGATCCCCCTCTACG
131 GCCGGGGATCGACCCGGTCCCCCTCTGCG
* * * * * * * **
27848970 TGCTATCGATCTTGCTACCGAAACCCTCGATTCGGTCT-GATCTTAGAC-TAGGAATGAACTCCG
1 TGCTGTCGATCCTGCTGCCAAAACCCTCG-GTCCGACTGGGGCTTAGACAT-GGAATGAACTCCG
** * * * * * *
27849033 TATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGTGGCATAATGCGC
64 TATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCAC
* *
27849098 AAGTCGAGGATCGACCCGGTCCCCCTCTGCG
129 AAGCCGGGGATCGACCCGGTCCCCCTCTGCG
* ** *
27849129 TGCTG-CGGTCCTATTGCCAAAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCCT
1 TGCTGTCGATCCTGCTGCCAAAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCGT
* * *
27849192 ATGCCTAAGCCAACCCACGAAA-TAGGCGTGTGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCAC
65 ATGCCTAAGCCAACCCATGAAACGA-GCGTGTGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCAC
** *
27849256 AAGCCGGGGATCGGTCTGGTCCCCC-CTGCG
129 AAGCCGGGGATCGACCCGGTCCCCCTCTGCG
27849286 TGCTGTCGATCCTGCTG
1 TGCTGTCGATCCTGCTG
27849303 TCGTAACCCT
Statistics
Matches: 264, Mismatches: 62, Indels: 15
0.77 0.18 0.04
Matches are distributed among these distances:
157 15 0.06
158 117 0.44
159 127 0.48
160 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
TGCTGTCGATCCTGCTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAA
GCCGGGGATCGACCCGGTCCCCCTCTGCG
Found at i:27849331 original size:158 final size:158
Alignment explanation
Indices: 27848852--27849353 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 158
27848842 CCGACTGGGG
* * *
27848852 CTTAGAC-AGGGAATGAACTCTGTATGCCTAAGGCAACCCATGAAACGAGCGTGTGGGCGGTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * * * * *
27848916 TCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTATCGATC
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
* * * *
27848981 TTGCTACCGAAACCCTCGATTCGGTCTGAT
130 CTGCTGCCGAAACCCTCG-TTCAGTCCGAT
** * *
27849011 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
* * * * * * *
27849076 CAGCCGGAGTGGCATAATGCGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTG-CGGTCC
66 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * **
27849140 TATTGCCAAAACCCTCGGTCCAG-CTGGGG
131 TGCTGCCGAAACCCTC-GTTCAGTC-CGAT
* * *
27849169 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TAGGCGTGTGGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGTGGGCGCTCA
* ** *
27849232 GCCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGTCTGGTCCCCC-CTGCGTGCTGTCGAT
64 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
27849296 CCTGCTGTCGTAACCCTCAGTTCAGTCCAAT
129 CCTGCTGCCGAAACCCTC-GTTCAGTCCGAT
*
27849327 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
27849354 TTAGATTGGG
Statistics
Matches: 274, Mismatches: 61, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 13 0.05
158 156 0.57
159 104 0.38
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGAAACCCTCGTTCAGTCCGAT
Found at i:27849363 original size:26 final size:26
Alignment explanation
Indices: 27849327--27849379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27849317 TCAGTCCAAT
27849327 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
27849353 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27849379 C
1 C
27849380 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27849707 original size:26 final size:26
Alignment explanation
Indices: 27849678--27849730 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27849668 CTGGTCCAAT
27849678 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
27849704 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
27849730 C
1 C
27849731 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:27851242 original size:158 final size:158
Alignment explanation
Indices: 27850943--27851399 Score: 402
Period size: 158 Copynumber: 2.9 Consensus size: 158
27850933 ACTCCGTATG
* *
27850943 CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACACGGAATGAACTACATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
27851008 CGGCCAGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGGCCAGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTACGTGCTGCCGACCCT
*
27851073 ACTACCGCAACCGTCGATCCGATCCAAT
131 ACTACCACAACCGTCGATCCGATCCAAT
** * * * * *
27851101 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGCGCTGAGT
1 CTTAGACACGGAATGAACTACATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
27851166 CGGTC-GAAAGGCATAATGCGCAAGCCGGGGATTGACCCGGTCCCCCTCTGCGTGCTGCC-AGCC
66 CGGCCAGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCC-CTACGTGCTGCCGA-CC
* * * * * ****
27851229 CTGCTGCCACAACCCTCGGTCC-AGCTGGGG
129 CTACTACCACAACCGTCGATCCGATC-CAAT
* * * * * * * *
27851259 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCATGAAACG-GCCGTGTGGGTGCTCAA
1 CTTAGACACGGAATGAACTACATATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAG
* * * ** * * * *
27851323 CCGGCCGGAGAGGCAGAATGCGTAAGCTGAGGATCG-CCTGGTCCCCCTTACGTGCTGCCCATCC
65 CCGGCCAGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTACGTGCTGCCGACCC
* *
27851387 TGCTACCGCAACC
130 TACTACCACAACC
27851400 CTCGGTCTGG
Statistics
Matches: 237, Mismatches: 56, Indels: 13
0.77 0.18 0.04
Matches are distributed among these distances:
157 61 0.26
158 153 0.65
159 23 0.10
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACACGGAATGAACTACATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAAAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTACGTGCTGCCGACCCT
ACTACCACAACCGTCGATCCGATCCAAT
Found at i:27851447 original size:25 final size:26
Alignment explanation
Indices: 27851418--27851467 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27851408 GGTATGATCA
27851418 TAGACT-GGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
27851443 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
27851468 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:27852140 original size:159 final size:156
Alignment explanation
Indices: 27851801--27852224 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 156
27851791 TATCCTTAGA
* * * * *
27851801 AATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGAGCGATTAGCCAGTCA
1 AATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCG-TTAGCCAGCCG
* ** * ** * * *
27851866 GAAAGGTAGAATGCGCAAGCCGGGGATCGACTTGGTCCCCC--TGCGTGCTGTCCATCCTGCTGC
64 GAGAGACAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTTACGTGCTATCCATCCCGCTGC
* * *
27851929 CACAACCCTCGGTCCGATCTGATCTTAG
129 CACAACCCTCGGTCCGAGCTGACCCTAG
* * *
27851957 ATTGGGAATGAACTCCGTATGCCTAAGTCATCCCATGAAACGAGCGTGCGGGCGTTGAGCCAGCC
1 AAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCGTT-AGCCAGCC
* * * * **
27852022 GGAGAGCCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTTACGTGCTATCGGTCCCGCTG
63 GGAGAGACAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTTACGTGCTATCCATCCCGCTG
*
27852087 CCACAACCCTCGGTCC-AGCTGGGCCCTAG
128 CCACAACCCTCGGTCCGAGCT-GACCCTAG
* * * * * *
27852116 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAACGGGCGTGCGGGCGCTCAACCGGCT
1 A-ATGGAATGAACTCCGTATGCCTAAGCCAACCCAG-AAACGAGCGTGCGGGCG-TTAGCCAGCC
*
27852181 GGAGAGACAAAATGCGCAAGCCGAGGATC-ACCCCGGTCCCCCTT
63 GGAGAGACAAAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTT
27852225 GCATGCTGCC
Statistics
Matches: 219, Mismatches: 40, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
156 4 0.02
157 84 0.38
158 4 0.02
159 125 0.57
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (156 bp):
AATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACGAGCGTGCGGGCGTTAGCCAGCCGGA
GAGACAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTTACGTGCTATCCATCCCGCTGCCA
CAACCCTCGGTCCGAGCTGACCCTAG
Found at i:27852321 original size:158 final size:155
Alignment explanation
Indices: 27851875--27852366 Score: 445
Period size: 159 Copynumber: 3.1 Consensus size: 155
27851865 AGAAAGGTAG
**
27851875 AATGCGCAAGCCGGGGATCGACTTGGTCCCCC-TGCGTGCTGTCC-ATCCTGCTGCCACAACCCT
1 AATGCGCAAGCCGGGGATC-ACCCGGTCCCCCTTGCGTGCTG-CCGATCCTGCTGCCACAACCCT
* * * * *
27851938 CGGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCATCCCATGAAACGAGCG
64 CGGTCC-ATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA-GAAAGGAGCG
* * * * *
27852003 TGCGGGCGTTGAGCCAGCCGGAGAGCCAT
127 TGCGGGCGCTCAACCAGCCGGAGAGACAA
* * * ** * *
27852032 AATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTTACGTGCTATCGGTCCCGCTGCCACAACCCT
1 AATGCGCAAGCCGGGGATC-ACCCGGTCCCCC-TTGCGTGCTGCCGATCCTGCTGCCACAACCCT
* * ** * * *
27852097 CGGTCCAGCTGGGCCCTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAACGG-G
64 CGGTCCATC-CGATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCAG-AAA-GGAG
* *
27852160 CGTGCGGGCGCTCAACCGGCTGGAGAGACAA
125 CGTGCGGGCGCTCAACCAGCCGGAGAGACAA
* * * *
27852191 AATGCGCAAGCCGAGGATCACCCCGGTCCCCCTTGCATGCTGCCGATCCTACTACCACAACCCTC
1 AATGCGCAAGCCGGGGATCA-CCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGCCACAACCCTC
* * *
27852256 GATCCAATCCGTTCTTAGACTGGGAATGAATTCCATATGCCTAAGTCAACCCACGAAAGGAGCGT
65 GGTCC-ATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA-GAAAGGAGCGT
* * * * *
27852321 GCGGGTGCTCAGCC-GACCAGAGAGGCAG
128 GCGGGCGCTCAACCAG-CCGGAGAGACAA
* *
27852349 GATGCGCAAGCTGGGGAT
1 AATGCGCAAGCCGGGGAT
27852367 TGAACGGGTG
Statistics
Matches: 267, Mismatches: 55, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 32 0.12
158 110 0.41
159 123 0.46
160 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (155 bp):
AATGCGCAAGCCGGGGATCACCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
GTCCATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAGAAAGGAGCGTGCG
GGCGCTCAACCAGCCGGAGAGACAA
Found at i:27852489 original size:123 final size:123
Alignment explanation
Indices: 27852269--27852515 Score: 368
Period size: 123 Copynumber: 2.0 Consensus size: 123
27852259 CCAATCCGTT
* * ** * *
27852269 CTTAGACTGGGAATGAATTCCATATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGACTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGC
* * ** *
27852334 CGACCAGAGAGGCAGGATGCGCAAGCTGGGGATTGAACGGGTGGTAGGTGGGTTCAAG
66 CAACCAGAGAGGCAGGATGCACAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAG
* * *
27852392 CTTAGATTGGGGATGAACTCCGTATGACTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGACTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGC
27852457 CAACCAGAGAGGCAGGATGCACAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAG
66 CAACCAGAGAGGCAGGATGCACAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAG
27852515 C
1 C
27852516 ACATCTTCAT
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
123 110 1.00
ACGTcount: A:0.28, C:0.22, G:0.34, T:0.17
Consensus pattern (123 bp):
CTTAGACTGGGAATGAACTCCATATGACTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGC
CAACCAGAGAGGCAGGATGCACAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAG
Found at i:27853610 original size:157 final size:157
Alignment explanation
Indices: 27853113--27853615 Score: 427
Period size: 158 Copynumber: 3.2 Consensus size: 157
27853103 ATGAACTCCA
* * * * *
27853113 TATGCTTAGAC-ATGGAATGAACTTCGTAT-TC-TAAGCCAACCCATTAAATGAGTGTGCGGGTG
1 TATG-TTAGACTA-GGAATGAACTCCGTATGGCATAAGTCAACCCA-TAAACGAGCGTGCGGGTG
* * * * ** *
27853175 CTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCGTGGATCGGCCTAGTCCCCCCCTGCGTGCTGT
63 CTCAGTCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCATGCTGT
** * * *
27853240 CAATCCTGCTGCTGCAACCCTCAGTTCGGTCC
127 GGATCCTGCTGCCGCAACCCTCGGTCCGGT-C
* * * *
27853272 AATCTTAGACT-GGTAATGAACTCCGTAT-GCATAGGTCAACCCATAAACGAGCGTGCGGGTGTT
1 TATGTTAGACTAGG-AATGAACTCCGTATGGCATAAGTCAACCCATAAACGAGCGTGCGGGTGCT
* * * * * * * ** *
27853335 GAG-CTGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGACTCGATCCCCTTTTGCATGCTGCC
65 CAGTC-GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CCTGCATGCTG-T
** * *
27853399 GG-TCCCACTGCCACAAACCTCGGTCCGG-C
127 GGATCCTGCTGCCGCAACCCTCGGTCCGGTC
* *
27853428 TAGGGCTTAGAC-ATGGAATGAACTCCCTATGGC-TAAG-CAACCCATGAAAC-AGGCGTGCGGG
1 TA-TG-TTAGACTA-GGAATGAACTCCGTATGGCATAAGTCAACCCAT-AAACGA-GCGTGCGGG
**
27853489 TGCTCAGTCGGCCGGAGAGGCAAAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCTGCATGCTG
61 TGCTCAGTCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTG
*
27853554 TGGATCCTGCTGCCGTAACCCTCGGTCCGGTC
126 TGGATCCTGCTGCCGCAACCCTCGGTCCGGTC
27853586 TGATGTTAGACTAGGAATGAACTCCGTATG
1 T-ATGTTAGACTAGGAATGAACTCCGTATG
27853616 CTTAGACTGG
Statistics
Matches: 267, Mismatches: 59, Indels: 38
0.73 0.16 0.10
Matches are distributed among these distances:
156 4 0.01
157 68 0.25
158 177 0.66
159 18 0.07
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (157 bp):
TATGTTAGACTAGGAATGAACTCCGTATGGCATAAGTCAACCCATAAACGAGCGTGCGGGTGCTC
AGTCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTGGAT
CCTGCTGCCGCAACCCTCGGTCCGGTC
Found at i:27853620 original size:26 final size:26
Alignment explanation
Indices: 27853591--27853642 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27853581 CGGTCTGATG
*
27853591 TTAGACTAGG-AATGAACTCCGTATGC
1 TTAGACT-GGTAATGAAATCCGTATGC
*
27853617 TTAGACTGGTGATGAAATCCGTATGC
1 TTAGACTGGTAATGAAATCCGTATGC
27853643 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGTAATGAAATCCGTATGC
Found at i:27854578 original size:26 final size:26
Alignment explanation
Indices: 27854527--27854579 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27854517 CTGATCTGAT
**
27854527 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27854553 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27854579 C
1 C
27854580 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27855082 original size:26 final size:26
Alignment explanation
Indices: 27855031--27855083 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27855021 CTAGTCTGAT
**
27855031 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
27855057 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
27855083 C
1 C
27855084 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:27855743 original size:26 final size:26
Alignment explanation
Indices: 27855705--27855757 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27855695 GGCTCAAACT
27855705 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27855731 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27855757 C
1 C
27855758 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27856036 original size:158 final size:159
Alignment explanation
Indices: 27855730--27856176 Score: 486
Period size: 158 Copynumber: 2.8 Consensus size: 159
27855720 AACTCCATAT
* * *
27855730 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGAGCGCTCAG
** * * * * *
27855795 TTGGTCGGAGAGGCAGAATACGCAAGCCGAGGATCAACCCGATCCCCCTTTGCATGCTGTCGGTC
66 ACGGTCGGAGAGGCAAAATACGCAAGCCGAGGATCAACCCGATCCCCCTCTACATGCTGCCGATC
* * * ***
27855860 TCGTTTCCACAACCCTCGGTCTGGCTAGG
131 CCGCTACCACAACCCTCGGTCCAACTAGG
* * *
27855889 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCGTTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGAGCGCTCAG
* * * * * * *
27855953 ACGGTCGGAGAGGTAAAATGCGTAAGTCGGGGATCAACCCGGTCCCCCTCTACGTGCTGCCGATC
66 ACGGTCGGAGAGGCAAAATACGCAAGCCGAGGATCAACCCGATCCCCCTCTACATGCTGCCGATC
*
27856018 CCGCTACCACAACCCTCGGTCCAACTGGG
131 CCGCTACCACAACCCTCGGTCCAACTAGG
* * **
27856047 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGAGCGCTCAG
* * * * * * ** * * *
27856112 CCGGTCGAAGAGGTAGAATACAG-AAGCCGGGGACCGGCCCGATCCCCC-ATACGTGCTGTCGAT
66 ACGGTCGGAGAGGCAAAATAC-GCAAGCCGAGGATCAACCCGATCCCCCTCTACATGCTGCCGAT
27856175 CC
130 CC
27856177 TGCTGCCGCC
Statistics
Matches: 243, Mismatches: 43, Indels: 5
0.84 0.15 0.02
Matches are distributed among these distances:
158 147 0.60
159 95 0.39
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGAGCGCTCAG
ACGGTCGGAGAGGCAAAATACGCAAGCCGAGGATCAACCCGATCCCCCTCTACATGCTGCCGATC
CCGCTACCACAACCCTCGGTCCAACTAGG
Found at i:27856244 original size:26 final size:26
Alignment explanation
Indices: 27856208--27856261 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
27856198 TCCGGTTAGA
27856208 GCTTAGACTAGGAATGAACTCTGCAT
1 GCTTAGACTAGGAATGAACTCTGCAT
*
27856234 GCTTAGACTAGGAATGAACTCTGTAT
1 GCTTAGACTAGGAATGAACTCTGCAT
27856260 GC
1 GC
27856262 CTAACTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCTGCAT
Found at i:27856741 original size:158 final size:158
Alignment explanation
Indices: 27856443--27857050 Score: 483
Period size: 158 Copynumber: 3.8 Consensus size: 158
27856433 AACCCCATAT
*
27856443 GCTTAGACATGGAATGAACTCCGTATGCC-TAATCCAACCCACGAAACGAGCGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTTAGT-CAACCCACGAAACGAGCGTGCGGGCGTTCA
** *
27856507 GCAGGTCGAAAAGGCAGAATGCGTAAGCCGAGGACCGACCCGATCCCCCTTGCGTGCTATCGATC
65 GCAGACCGAAAAGGCAGAATGCGTAAGCCGAGGACCGACCCGATCCCCCTTGCGTGCTACCGATC
* * *
27856572 CTACTATCACAACACTCGGTCCGATCCA-A
130 CTACTACCACAACACTCGATCCG-GCCAGA
* * *
27856601 TCTTAGAC-TGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCGTTCA
* * ** * * * * *
27856665 GCAGACCGAAGAGGCATAATGCGTAAGCC-AGGGATTGGCTCGAT-CCCCTCTGCGTGTTCCCGG
65 GCAGACCGAAAAGGCAGAATGCGTAAGCCGA-GGACCGACCCGATCCCCCT-TGCGTGCTACCGA
* * * * *
27856728 T-CTCGCTGCCACAACCCTCGATCCGGCTAGG
128 TCCT-ACTACCACAACACTCGATCCGGCCAGA
* * * * * *
27856759 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
** * * * * * * * * * * *
27856824 C-GGTCGGAGAGGTAAAATGCGTAAGTCGGGGATCAACCCGGTCCCCCTCTACGTGCTGCCGATC
66 CAGACCGAAAAGGCAGAATGCGTAAGCCGAGGACCGACCCGATCCCCCT-TGCGTGCTACCGATC
** * * ** ** *
27856888 CCGCTACCACAACCCTCGGTCCAACTGGG
130 CTACTACCACAACACTCGATCCGGCCAGA
* * * * * ** *
27856917 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * * * * * * * *
27856982 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTACCGATCC
66 CAGACCGAAAAGGCAGAATGCGTAAGCCGAGGACCGACCCGATCCCCCTTGCGTGCTACCGATCC
27857047 TACT
131 TACT
27857051 GTCGTAACCT
Statistics
Matches: 369, Mismatches: 70, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
157 39 0.11
158 285 0.77
159 45 0.12
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
CAGACCGAAAAGGCAGAATGCGTAAGCCGAGGACCGACCCGATCCCCCTTGCGTGCTACCGATCC
TACTACCACAACACTCGATCCGGCCAGA
Found at i:27857027 original size:316 final size:316
Alignment explanation
Indices: 27856443--27857036 Score: 717
Period size: 316 Copynumber: 1.9 Consensus size: 316
27856433 AACCCCATAT
* * * *
27856443 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAA
* * * *
27856508 CAGGTCGAAAAGGCAGAATGCGTAAGCCGAGGACCGACCCGATCCCCCTTGCGTGCTATCGATCC
66 CAGGTCGAAAAGGCAAAATGCGTAAGCCGAGGACCAACCCGATCCCCCTTACGTGCTACCGATCC
* * * * * * *
27856573 TACTATCACAACACTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAA
131 CACTACCACAACACTCGGTCCAATCCAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
* ** * * * * ***
27856638 CCCACGAAACGAGCGTTCGGGCGTTGAGCAGACCGAAGAGGCATAATGCGTAAGCCAGGGATTGG
196 CCCACGAAACGAGCGTGCGGGCACTCAACAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAA
* *
27856703 CTCGATCCCCTCTGCGTGTTCCCGGTCTCGCTGCCACAACCCTCGATCCGGCTAGG
261 CCCGATCCCCCCTGCGTGTTCCCGGTCTCGCTGCCACAACCCTCGATCCGGCTAGG
*
27856759 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAA
* * * * * * * *
27856824 C-GGTCGGAGAGGTAAAATGCGTAAGTCGGGGATCAACCCGGTCCCCCTCTACGTGCTGCCGATC
66 CAGGTCGAAAAGGCAAAATGCGTAAGCCGAGGACCAACCCGATCCCCCT-TACGTGCTACCGATC
* * ***
27856888 CCGCTACCACAACCCTCGGTCCAA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
130 CCACTACCACAACACTCGGTCCAATC-CAAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGC
* * * * * *
27856951 CAACCCACGAAATGGGCGTGCGGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGAT
193 CAACCCACGAAACGAGCGTGCGGGCACTCAACAGACCGAAGAGGCAGAATGCGCAAGCCAGGGAT
27857016 CAACCCGATCCCCCCTGCGTG
258 CAACCCGATCCCCCCTGCGTG
27857037 CTACCGATCC
Statistics
Matches: 228, Mismatches: 47, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
315 39 0.17
316 188 0.82
317 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAA
CAGGTCGAAAAGGCAAAATGCGTAAGCCGAGGACCAACCCGATCCCCCTTACGTGCTACCGATCC
CACTACCACAACACTCGGTCCAATCCAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCACTCAACAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAA
CCCGATCCCCCCTGCGTGTTCCCGGTCTCGCTGCCACAACCCTCGATCCGGCTAGG
Found at i:27857705 original size:158 final size:159
Alignment explanation
Indices: 27857543--27857913 Score: 352
Period size: 159 Copynumber: 2.3 Consensus size: 159
27857533 GCTGAGTCAG
* * * * **
27857543 CCAAAGAGGCATAATACGCAAGCCAGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCAGTCCTGT
1 CCAAAAAGGCAGAATACGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCCCAT
* * * * * *
27857608 TGCCATAACCCTCGATCC-GACT-GGGGTTAGACATGGAATGAACTTCGTATGCCTAACCCAACC
66 TGCCACAACCCTAGATCCAG-CTAGGGCTTAGACATGGAAGGAACTCCCTATGCCTAACCCAACC
27857671 CATGAAACGAGCGTGCGAACGCTTAGCCGA
130 CATGAAACGAGCGTGCGAACGCTTAGCCGA
* *** * * **
27857701 CCAAAAAGGCAGAATACGTAAGTTGGGGATTGGCCCGATCCCCCTCTGCGTGCTGCTGGTCCCAT
1 CCAAAAAGGCAGAATACGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCCCAT
* * * * *
27857766 TGCCACAACCTTAGGTCCAGTTAGGGCTTAGACTTGGAAGGAACTCCCTATGCCTAAGCCAACCC
66 TGCCACAACCCTAGATCCAGCTAGGGCTTAGACATGGAAGGAACTCCCTATGCCTAACCCAACCC
* ** * * *
27857831 ATGAAACGGGCGTGCGGGCACTCAGTCGA
131 ATGAAACGAGCGTGCGAACGCTTAGCCGA
* ** * * * ** *
27857860 TCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCC-CTGCGTGCTG
1 CCAAAAAGGCAGAATACGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTG
27857914 TCGATCCTAC
Statistics
Matches: 173, Mismatches: 38, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
158 76 0.44
159 97 0.56
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CCAAAAAGGCAGAATACGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCCCAT
TGCCACAACCCTAGATCCAGCTAGGGCTTAGACATGGAAGGAACTCCCTATGCCTAACCCAACCC
ATGAAACGAGCGTGCGAACGCTTAGCCGA
Found at i:27857890 original size:874 final size:864
Alignment explanation
Indices: 27855731--27858364 Score: 3011
Period size: 874 Copynumber: 3.0 Consensus size: 864
27855721 ACTCCATATG
** * * * * *
27855731 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAG
** ** ** * * * * * ** *
27855795 TTGGTCGGAGAGGCAGAATACGCAAGCC-GAGGATCAACCCGATCCCCCTTTGCATGCTGTCGGT
65 CAGACCAAAGAGGCATAATACGCAAGCCAG-GGATCGACTCGAT-CCCCTCTGCGTGCTCCCAGT
* * * * * *
27855859 CTCGTTTCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
128 CTCGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCC
* * ** ** ** * * *
27855924 AACCCACAAAACGGGCATGCGGGCGTTCAACGGTCGGAGAGGTAAAATGCGTAAGTCGGGGATCA
193 AACCCACAAAACGAGCGTGCGAACGTTCAACGACCAAAAAGGCAAAATACGTAAGTCGGGGATCA
27855989 ACCCGGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGA
258 ACCCGGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGA
* * *
27856054 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGAGCGCTCAGCCGGTCG
323 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGTCG
* * * * * * *
27856119 AAGAGGTAGAATACAGAAGCCGGGGACCGGCCCGATCCCCCATACGTGCTGTCGATCCTGCTGCC
388 GAGAGGCAGAATGC-GAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACT---
* * * * * * * *
27856184 GCCGCAACCCTCAGTCCGGTTAGAGCTTAGACTAGGAATGAACTCTGCATGCTTAGACTAGGAAT
449 GTCGCAACCCTCGGTCCGATTAGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGAT
* * * ** * *
27856249 GAACTCTGTATGCCTAACTCAACCCACGAAGCGGGCATGCGGGCATTTAGCCGGCCGGAGAGGCC
514 GAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTGGAGAGGCC
* * * * *
27856314 GATCGAAGAGGTAGAATGCGCAAGCC-GAGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCT
578 GATCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * * * *
27856378 GCTGCTAGTCCTACTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGTATGAACCCCATAT
642 GCTGCTGGTCCTGCTGTCATAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATAT
* * * *
27856443 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
707 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTG-TGGCGCTCAG
* * * * * * * * *
27856508 CAGGTCGAAAAGGCAGAATGCGTAAGCCGAGGACCGACCCGATCCCCCTTGCGTGCTATCGATCC
771 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCC
* * * *
27856573 TACTATCACAACACTCGGTCCGATCCAAT
836 TGCTATCGCAACCCTCGGTCCGATCCGAT
** * *
27856602 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTTCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGC
* * * * * * *
27856667 AGACCGAAGAGGCATAATGCGTAAGCCAGGGATTGGCTCGATCCCCTCTGCGTGTTCCCGGTCTC
66 AGACCAAAGAGGCATAATACGCAAGCCAGGGATCGACTCGATCCCCTCTGCGTGCTCCCAGTCTC
* *
27856732 GCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 GCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAAC
* ** ** ** * * *
27856797 CCACAAAACGGGCGTGCGGGCGTTCAACGGTCGGAGAGGTAAAATGCGTAAGTCGGGGATCAACC
196 CCACAAAACGAGCGTGCGAACGTTCAACGACCAAAAAGGCAAAATACGTAAGTCGGGGATCAACC
27856862 CGGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACAT
261 CGGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACAT
* * *
27856927 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAACCGGCCGGAG
326 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGTCGGAG
** ** *
27856992 AGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTACCGATCCTACTGTCGTA
391 AGGCAGAATGCG-AAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGTCGCA
* * *
27857057 A-CCTCGGTCTGATTAGATCTTAGACTAGGATTAAACTCCGTATGCTTAGACTGGGGATGAACTT
455 ACCCTCGGTCCGATTAGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC-T
* * * *
27857121 CGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGTCGGCTGAAGAGGCCGGTCGG
519 CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTGGAGAGGCCGATCGG
* * * * * *
27857186 AGAGGCAGAATGCACAAGCCAGGGATCGACCTGGTCACCTCTTTCGTGCTACCGATCCTGCTGCT
584 AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTC-CCCCCTGCGTGCTGCCGATCCTGCTGCT
* * * * * *
27857251 GGTCCTGTTGCCACAACCCTCGATCCGATCAGATCTTAGATTGGGAATGAACTCCGTATGCTTAG
648 GGTCCTGCTGTCATAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * *
27857316 ACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGACACTCAGCCGATT
713 ACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGG-CGCTCAGCCGGTC
* *
27857381 GGAGAGGCAGAATACGCAAGCTGAGGATCGGCCCGGTCCCCCCTTGCATGCTGTCGATCCTGCTA
777 GGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGT-CCCCCTTGCGTGCTGTCGATCCTGCTA
*
27857446 TCGCAACCCTCGGTCAGGTCTGGTCCGAT
841 TCGCAACCCTCGGTC----C-GATCCGAT
*
27857475 CTTAGATTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTTC-GGCTGCTGAG
1 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGC-GCTGAG
* *
27857539 TCAG-CCAAAGAGGCATAATACGCAAGCCAGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCAGT
65 -CAGACCAAAGAGGCATAATACGCAAGCCAGGGATCGACTCGAT-CCCCTCTGCGTGCTCCCAGT
* * * * *
27857603 C-CTGTTGCCATAACCCTCGATCCGACT-GGGGTTAGACATGGAATGAACTTCGTATGCCTAACC
128 CTC-GCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAACC
** * * *
27857666 CAACCCATGAAACGAGCGTGCGAACGCTT-AGCCGACCAAAAAGGCAGAATACGTAAGTTGGGGA
192 CAACCCACAAAACGAGCGTGCGAACG-TTCA-ACGACCAAAAAGGCAAAATACGTAAGTCGGGGA
*** * * * * ** * * * ** *
27857730 TTGGCCCGATCCCCCTCTGCGTGCTGCTGGTCCCATTGCCACAACCTTAGGTCCAGTTAGGGCTT
255 TCAACCCGGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTT
* * * * *
27857795 AGACTTGGAAGGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGTCGA
320 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGG
* *
27857860 TCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACA
385 TCGGAGAGGCAGAATGCG-AAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACT
* * * *
27857925 ATCGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGAT
449 GTCGCAACCCTCGGTCCGATTAGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGAT
* * * * ** *
27857990 GAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAACCGATTGGGGAGGCC
514 GAA-CTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTGGAGAGGCC
* ** * * * *
27858055 GACCGGAGAGGCAGAATATGTAAGTCAGGGATCGACCCGGTCCCCCCTGCGTGATGCAGATCCTG
578 GATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTG
*
27858120 CTGCTGGTCCTGCTGTCATAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCCATATG
643 CTGCTGGTCCTGCTGTCATAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATG
** * * * *
27858185 CTTTTACATGGAATGAACTCTGTATGCCTAAGGCAACCCATGAAATGAGCGTGTAGGCGCTCAGT
708 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGCGCTCAGC
* * * * *
27858250 CGGTCGGAGAGACAGAATGCACAAGCTAAGGATCGGCCTGGTCCCCC-TGCGTGCTGCCGATCCT
772 CGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCT
* * *
27858314 GCTGTCGTAACCCTCGGTCCGATCTGAT
837 GCTATCGCAACCCTCGGTCCGATCCGAT
27858342 CTTAGACTGGGAATGAACTCTAT
1 CTTAGACTGGGAATGAACTCTAT
27858365 TTACTTAGAC
Statistics
Matches: 1501, Mismatches: 240, Indels: 48
0.84 0.13 0.03
Matches are distributed among these distances:
866 134 0.09
867 196 0.13
868 38 0.03
869 1 0.00
870 314 0.21
871 84 0.06
872 37 0.02
873 154 0.10
874 402 0.27
875 140 0.09
876 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (864 bp):
CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGC
AGACCAAAGAGGCATAATACGCAAGCCAGGGATCGACTCGATCCCCTCTGCGTGCTCCCAGTCTC
GCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAAC
CCACAAAACGAGCGTGCGAACGTTCAACGACCAAAAAGGCAAAATACGTAAGTCGGGGATCAACC
CGGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGTCGGAG
AGGCAGAATGCGAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAA
CCCTCGGTCCGATTAGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCG
TATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCTGGAGAGGCCGATCGGAG
AGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCTGGT
CCTGCTGTCATAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACA
TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTATCGCA
ACCCTCGGTCCGATCCGAT
Found at i:27857979 original size:26 final size:26
Alignment explanation
Indices: 27857950--27857999 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
27857940 CCGATTCGAT
*
27857950 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACCCCGTACG
*
27857976 CTTAGACTGGGGATGAACCCCGTA
1 CTTAGACTGGGAATGAACCCCGTA
27858000 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTACG
Found at i:27859415 original size:158 final size:158
Alignment explanation
Indices: 27859047--27859509 Score: 572
Period size: 159 Copynumber: 2.9 Consensus size: 158
27859037 AACTCCGTAT
* * * *
27859047 GCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCCCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * * * ** *
27859112 CCGGCCGGAGAGGTAGAATACGCAAGCCGAGGATCGGTCCGGTCCCCCTCTGTGTGATGCCGGTC
66 TCGG-CAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGATGCCGGTC
27859177 TCGCTGCCACAACCCTCGATCCGGCTGGG
130 TCGCTGCCACAACCCTCGATCCGGCTGGG
* *
27859206 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGGGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * *
27859271 TCGGTCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGTTGCCGGTC
66 TCGG-CAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGATGCCGGTC
27859336 -CGCTGCCACAACCCTC-AGTCCGGCTGGG
130 TCGCTGCCACAACCCTCGA-TCCGGCTGGG
* * * * * * *
27859364 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCAAACCCACGAAATGGGCGTGCGGTCTCTTAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * * * * *
27859429 TCGGCCGAAAGGCAGAATGCGCAAGTCAGGGATCGACCTGGTCCCCC-CTGCGTGCTGCCGATCT
66 TCGGCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGATGCCGGTCT
* * *
27859493 TGTTGCCGCAACCCTCG
131 CGCTGCCACAACCCTCG
27859510 GTCTGATCCG
Statistics
Matches: 262, Mismatches: 39, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
156 14 0.05
157 50 0.19
158 86 0.33
159 112 0.43
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
TCGGCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGATGCCGGTCT
CGCTGCCACAACCCTCGATCCGGCTGGG
Found at i:27859551 original size:26 final size:26
Alignment explanation
Indices: 27859522--27859600 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 26
27859512 CTGATCCGAT
*
27859522 CTTAGACTAGGAACGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* * *
27859548 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* * **
27859574 CTTAGACTCGGGATAAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
27859600 C
1 C
27859601 CTATGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:27860645 original size:26 final size:26
Alignment explanation
Indices: 27860603--27860655 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27860593 GGCTCAAAAT
27860603 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27860629 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27860655 C
1 C
27860656 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27861145 original size:26 final size:26
Alignment explanation
Indices: 27861104--27861153 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
27861094 CTGGTCCGAA
*
27861104 CTTAGACTGGGAATGAACTTCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
27861130 CTTAGACTAGGG-ATGAACTCCGTA
1 CTTAGACT-GGGAATGAACTCCGTA
27861154 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:27861986 original size:26 final size:26
Alignment explanation
Indices: 27861953--27862003 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27861943 TGGTCTGATC
27861953 TTAGACTGGGAATGAAC-TCCATATGA
1 TTAGACTGGGAATGAACAT-CATATGA
*
27861979 TTAGACTGGGGATGAACATCATATG
1 TTAGACTGGGAATGAACATCATATG
27862004 CCTATGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACATCATATGA
Found at i:27862642 original size:159 final size:158
Alignment explanation
Indices: 27862375--27862876 Score: 517
Period size: 159 Copynumber: 3.2 Consensus size: 158
27862365 CTGATTGGGG
* * * * *
27862375 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * * * * *
27862440 TGGCCGGAGAGGCAGAATACTCAAGCCAAGGACCGGCCTGGTCCCCCCCTGCGTGCTGTCAATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATCC
* *
27862505 TTCTGCCACAACCCTTGGTCCGATCTGAT
131 TGCTGCCACAACCCTCGGTCCG-TCTGAT
* *
27862534 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * ** * *
27862598 CCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCTTCTGTGTGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATC
* ** * **
27862663 CTGCTGCCATAACCCTCAATCCGGCTAGGG
130 CTGCTGCCACAACCCTCGGTCCGTCT-GAT
* * * * ** * *
27862693 CTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTAAGGGCGGTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * *
27862758 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGT--CCCCCTGCGTGCTATCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATCC
* * * *
27862821 TGCTGTCGCAACCCTCGGTCTGGTTTGAT
131 TGCTGCCACAACCCTCGGTC-CGTCTGAT
*
27862850 CTTAGAC-TCTGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
27862877 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 63, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
156 1 0.00
157 54 0.20
158 5 0.02
159 214 0.78
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGTCTGAT
Found at i:27863610 original size:26 final size:26
Alignment explanation
Indices: 27863572--27863624 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27863562 GGCTCAAACT
*
27863572 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
27863598 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
27863624 C
1 C
27863625 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:27864520 original size:159 final size:158
Alignment explanation
Indices: 27864136--27864559 Score: 453
Period size: 158 Copynumber: 2.7 Consensus size: 158
27864126 AACTTCATAT
* * *
27864136 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCGCTCAG
* * ** *
27864201 CTAGCTGGAGAGGCAGAATGGGCAAGCCAGGGATCGGCTTAGTCCCCCCTGTGTGCTGTCGATCC
66 CCAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGTGTGCTGCCGATCC
* * * *
27864266 TGCTATCACAACCCTCATTCCGATCTGA
131 CGCTACCACAACCCTCAGTCCGAACTGA
* * * * * *
27864294 TCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAT-TCGAGCGTTG
1 GCTTAGACATA-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGT-GGGCGCTC
* * * ** *
27864357 AGCCAGCTGGAGATGC-GTAATGCGCAAGCCGGGGATCAGCCCAGTCCCCTTTTGTGTGCTGCCT
64 AGCCAGCTGGAGAGGCAG-AATGCGCAAGCCAGGGATCGGCCCAGTCCCC-CCTGTGTGCTGCCG
* ** *
27864421 ATCCCGCTGCCACAACCCTTGGTCC-AACTGGG
127 ATCCCGCTACCACAACCCTCAGTCCGAACT-GA
* * * * *
27864453 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCATCCCATGAAATGGGCATGTGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCGCTCAG
* *
27864518 CCAGCCGGAGAGGCAGAATGCGC-AGTCAGGGATCGGCCCAGT
66 CCAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGT
27864560 TTGATCTTAG
Statistics
Matches: 214, Mismatches: 44, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 110 0.51
159 98 0.46
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCGCTCAG
CCAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGTGTGCTGCCGATCC
CGCTACCACAACCCTCAGTCCGAACTGA
Found at i:27865006 original size:439 final size:438
Alignment explanation
Indices: 27864206--27865079 Score: 1133
Period size: 439 Copynumber: 2.0 Consensus size: 438
27864196 CTCAGCTAGC
* * * * * *
27864206 TGGAGAGGCAGAATGGGCAAGCCAGGGATCGGCTTAGTCCCCCCTGTGTGCTGTCGATCCTGCTA
1 TGGAGAGGCAGAATGCGAAAGCCAGGGACCGACCTAGTCCCCCCTGCGTGCTGTCGATCCTGCTA
* * * * * *
27864271 TCACAACCCTCATTCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCAC
66 CCACAACCCTCAGTCCAATCCGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** * * *
27864336 GAAACGAGCATTCGAGCGTTGAGCCAGCTGGAGATGCGTAATGCGCAAGCCGGGGATCAGCCCAG
131 GAAACGAGCATTCGAGCGCTGAGCCAGCCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAG
* * * *
27864401 TCCCCTTTTGTGTGCTGCCTATCCCGCTGCCACAACCCTTGGTCCAACTGGGGCTTAGACATAGA
196 TCCCCCTCTGCGTGCTGCCTATCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATAGA
* * * * *
27864466 ATGAACTCCCTATGCCTAAGCCATCCCATGAAATGGGCATGTGGGCGCTCAGCCAGCCGGAGAGG
261 ATGAACTCCCTATGCCAAAGCCATCCCACGAAATGGGCATGCGGACGCTCAGCCAGCCGGAAAGG
* * *
27864531 CAGAATGCGCAGTCAGGGATCGGCCCAGTTTGATCTTAGACTGGGAATGAACTCCGGATGCTTAG
326 CAGAATGCGCAGCCAGGGATCAGCCCAGTCTGATCTTAGACTGGGAATGAACTCCGGATGCTTAG
*
27864596 ACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTG
391 ACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTG
* * * *
27864644 TGGAGAGGTAGAATGCGAAAGTCAGGGACCGACCTAGTCCTCCCTTGCGTGCTGTCTATCCTGCT
1 TGGAGAGGCAGAATGCGAAAGCCAGGGACCGACCTAGTCC-CCCCTGCGTGCTGTCGATCCTGCT
* * * *
27864709 GCCACAACCTTCGGTCCAATCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
65 ACCACAACCCTCAGTCCAATCCGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
27864774 TGAAACGAGCGTTCGGGCGCTGAGCCAGCCAGAGAGGCATAATGCGCAAGTCAGGGATC-GACCC
130 CGAAACGAGCATTCGAGCGCTGAGCCAGCCAGAGAGGCATAATGCGCAAGCCAGGGATCAG-CCC
* * * * * * *
27864838 GGTCCCCCTCTGCGTGCTGTCTGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTGGGCATG
194 AGTCCCCCTCTGCGTGCTGCCTATCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATA
* * * ** *
27864903 GAATGAACTCCCTATGCCAAAGCCATCTCACGAAAT-GGCGTGCGGACGCTTAGCTGGTCGGAAA
259 GAATGAACTCCCTATGCCAAAGCCATCCCACGAAATGGGCATGCGGACGCTCAGCCAGCCGGAAA
* * * *
27864967 GGTAGAATGCGCAAGCC-GAGGATTAGCCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
324 GGCAGAATGCGC-AGCCAG-GGATCAGCCCAGTCTGATCTTAGACTGGGAATGAACTCCGGATGC
* *
27865031 TTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGC
387 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGC
27865080 ATGCAGAAGG
Statistics
Matches: 370, Mismatches: 62, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
438 66 0.18
439 304 0.82
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (438 bp):
TGGAGAGGCAGAATGCGAAAGCCAGGGACCGACCTAGTCCCCCCTGCGTGCTGTCGATCCTGCTA
CCACAACCCTCAGTCCAATCCGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCATTCGAGCGCTGAGCCAGCCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAG
TCCCCCTCTGCGTGCTGCCTATCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATAGA
ATGAACTCCCTATGCCAAAGCCATCCCACGAAATGGGCATGCGGACGCTCAGCCAGCCGGAAAGG
CAGAATGCGCAGCCAGGGATCAGCCCAGTCTGATCTTAGACTGGGAATGAACTCCGGATGCTTAG
ACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTG
Found at i:27865042 original size:26 final size:26
Alignment explanation
Indices: 27865004--27865056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27864994 CCGGTCTGAT
27865004 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27865030 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27865056 C
1 C
27865057 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27865295 original size:159 final size:158
Alignment explanation
Indices: 27865029--27865339 Score: 358
Period size: 159 Copynumber: 2.0 Consensus size: 158
27865019 AACTCCGTAT
** * * *
27865029 GCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCATGCAGAAGGTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATGCAGAAGCTCAG
* * * * * *
27865094 CCGATCAGAGAGGCATAATGTGCAAGCCAGGGATCGGCCCAGTCCCACTC-TACGTGCTGTCGGT
66 CCGATCAGAGAGGCAAAATGCGCAAGCCAGGGAACGACCCAGTCCC-C-CATACGTGCTGCCGAT
* *
27865158 CCCGCTACCACAACCTTCGGTCCGATTGGG
129 CACGCTACCACAACCCTCGGTCCGATTGGG
* * * * **
27865188 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATGCAGAAGCTCAG
* *
27865252 TCGAATC-GAAGAGGCAAAATGCGCAAGCCTGGGAACGACCCAGTCCCCCATACGTGCTGCCGAT
66 CCG-ATCAG-AGAGGCAAAATGCGCAAGCCAGGGAACGACCCAGTCCCCCATACGTGCTGCCGAT
* *
27865316 CATGCTACCGCAACCCTCGGTCCG
129 CACGCTACCACAACCCTCGGTCCG
27865340 GTCTGATCAT
Statistics
Matches: 126, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 36 0.29
159 89 0.71
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATGCAGAAGCTCAG
CCGATCAGAGAGGCAAAATGCGCAAGCCAGGGAACGACCCAGTCCCCCATACGTGCTGCCGATCA
CGCTACCACAACCCTCGGTCCGATTGGG
Found at i:27865378 original size:26 final size:26
Alignment explanation
Indices: 27865349--27865399 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27865339 GGTCTGATCA
27865349 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
27865375 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
27865400 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:27866237 original size:25 final size:26
Alignment explanation
Indices: 27866187--27866238 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
27866177 CCGGCATGAT
*
27866187 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27866213 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27866238 C
1 C
27866239 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27866689 original size:158 final size:158
Alignment explanation
Indices: 27866364--27866804 Score: 457
Period size: 158 Copynumber: 2.8 Consensus size: 158
27866354 CTGCTGCTAG
** ** **
27866364 TCCTACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCTACTGCCACAACCCTCAATCCGATTGGCACTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * *
27866429 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGAGGAC
66 CAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGTCGACGAC
* *
27866494 TGGCTCGATCCCCCCTACGTGCTGTCGA
131 TGGCTCGATCCCCCCTACGTACTGCCGA
27866522 TCCTACTGCCACAACCCTCAATCCGATCT-G-ATCTTAGA-ATGGGAATGAACTCCGTATGCCTA
1 TCCTACTGCCACAACCCTCAATCCGAT-TGGCA-CTTAGACAT-GGAATGAACTCCGTATGCCTA
* ** * * * * *
27866584 AGTCAACCCACGAAACGAGCGTGC-ATTGCTGAGCTGACCGGAAAGGCATAATGCGGAAGTCGAC
63 AGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGTCGAC
* * *
27866648 GA-TCGG-TCCGGTCCCCCTCTGCGTACTGCCGG
128 GACT-GGCT-CGATCCCCC-CTACGTACTGCCGA
* ** * *
27866680 T-CTCGCTGCCACAACCCTTGATCCGGTTGGCACTTAGACATGGAATGAACTCCCTATGCCTAAG
1 TCCT-ACTGCCACAACCCTCAATCCGATTGGCACTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * *
27866744 CCAACCCACGAAACG-GACGTACGGGTGCTCAGCCGACCGGAGAGGCCGAATGCGCAAGTCG
65 CCAACCCACGAAACGAG-CGTGCGAGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGTCG
27866805 GGGATCGGTC
Statistics
Matches: 235, Mismatches: 36, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
156 2 0.01
157 48 0.20
158 151 0.64
159 34 0.14
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
TCCTACTGCCACAACCCTCAATCCGATTGGCACTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGTCGACGAC
TGGCTCGATCCCCCCTACGTACTGCCGA
Found at i:27867564 original size:26 final size:26
Alignment explanation
Indices: 27867526--27867578 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27867516 CTGGTTCGAT
27867526 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27867552 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27867578 C
1 C
27867579 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27868786 original size:26 final size:26
Alignment explanation
Indices: 27868747--27868799 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27868737 GGCTCAAACT
27868747 CTTAGACTATGAATAAACTCCGTATG
1 CTTAGACTATGAATAAACTCCGTATG
* *
27868773 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTAT-GAATAAACTCCGTATG
27868799 C
1 C
27868800 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTATGAATAAACTCCGTATG
Found at i:27869078 original size:158 final size:158
Alignment explanation
Indices: 27868772--27869187 Score: 523
Period size: 158 Copynumber: 2.6 Consensus size: 158
27868762 AACTCCGTAT
* * *
27868772 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
27868837 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGCCCCCCTCTACATGCTCTGGTCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGCCCCCCTCTACATGCTCCGATCC
* * *
27868902 CACTGCCACAACCTTCGGTCCAG-CTAGC
131 CACTACCACAACCCTCGGTCCAGTCT-GA
* * * * * * * *
27868930 GCTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACTCACAAAACGGGCATGCGGGCACTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
27868995 TCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCT-TACTTGCTACCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGCCCCCCTCTACATGCT-CCGATC
* **
27869059 CTACTACCGTAACCCTCGGTCCAGTCTGA
130 CCACTACCACAACCCTCGGTCCAGTCTGA
* *
27869088 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
27869152 GCCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATC
27869188 AACCCGATCC
Statistics
Matches: 217, Mismatches: 38, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
157 8 0.04
158 207 0.95
159 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGCCCCCCTCTACATGCTCCGATCC
CACTACCACAACCCTCGGTCCAGTCTGA
Found at i:27869573 original size:158 final size:158
Alignment explanation
Indices: 27869285--27869573 Score: 373
Period size: 158 Copynumber: 1.8 Consensus size: 158
27869275 AACTCTGTAT
* * * * * *
27869285 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCACATGCCTAAGCCAACCCACGAAAGGAGCGTGCAGGCGCTCAA
* * * ** * * **
27869350 CCGGCCGGAGAGGTAGAATGCGTAAGTTAGGGACCGGCCCAGTCCCCCCTGCGTGCTGTCAATCC
66 CCGACCGGAGAGGAAGAATGCGCAAGCCAGAGACCGGCCCAGTCCCCCCTACGTGCTACCAATCC
27869415 TGCTGCCACAACCCTCATTCCGACTGGG
131 TGCTGCCACAACCCTCATTCCGACTGGG
* *
27869443 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGGA-CGTGCAGGTGCTCA
1 GCTTAGACATGGAATGAACTCCACATGCCTAAGCCAACCCACGAAA-GGAGCGTGCAGGCGCTCA
* * * *
27869507 ACCGATCGGAGAGGAAGAATGCGCAAGCCAGAGATCGGCCCGGTCCCCCCTACGTGCTACCGATC
65 ACCGACCGGAGAGGAAGAATGCGCAAGCCAGAGACCGGCCCAGTCCCCCCTACGTGCTACCAATC
27869572 CT
130 CT
27869574 ACTGTCGTAA
Statistics
Matches: 109, Mismatches: 21, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
158 107 0.98
159 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCACATGCCTAAGCCAACCCACGAAAGGAGCGTGCAGGCGCTCAA
CCGACCGGAGAGGAAGAATGCGCAAGCCAGAGACCGGCCCAGTCCCCCCTACGTGCTACCAATCC
TGCTGCCACAACCCTCATTCCGACTGGG
Found at i:27869631 original size:26 final size:26
Alignment explanation
Indices: 27869602--27869680 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
27869592 CTAGTCCGAT
27869602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27869628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27869654 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27869680 C
1 C
27869681 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27869854 original size:26 final size:26
Alignment explanation
Indices: 27869825--27869877 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27869815 TCAGTCTGAT
*
27869825 CTTAGAC-TAGGAATAAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
27869851 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
27869877 C
1 C
27869878 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:27870377 original size:25 final size:26
Alignment explanation
Indices: 27870328--27870379 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
27870318 CTGATCTGAT
* *
27870328 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
27870354 CTTAGACTGGG-ATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
27870379 C
1 C
27870380 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:27870953 original size:674 final size:672
Alignment explanation
Indices: 27869852--27871074 Score: 1737
Period size: 674 Copynumber: 1.8 Consensus size: 672
27869842 CTCTGTATGC
27869852 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* * *
27869917 GATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGATCCGGTCCCCCCTATGTGCTATCGATACTG
66 GATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGAGCCGATCCCCCCTACGTGCTATCGATACTG
* * * *
27869982 CTATTGCAACACTCGGTCTAGTCCGATCCTAGACTAGGAATGAACTTTGTATGTCTAAGTCAACC
131 CTATTGCAACACTCGGTCCAGTCCAATCCTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACC
* * *
27870047 CACGAAACGAGCGTTCGGGCACTGAGCCAGCCAGAGAGGCATAATGCACAAGCTGGGGATCGGCT
196 CACGAAACGAGCGTTCGGGCACTGAACCAGCCAGAGAGGCATAATGCACAAGCTGAGGATCGGCC
* * * *
27870112 CGATCCCCCTCTGCGTGCTGTCCGGTCTCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACA
261 CGATCCCCCTCTGCGTGCTGTCCGGTCCCGCTGCCACAACCCTCGATCCGACTGAGGCTTAGACA
* ** * *
27870177 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGCGTGGGCGTTCAGTCAACCGGA
326 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCACGGGCGCTCACTCAACCGGA
* *
27870242 GAGGCAGATTGCACAAGCCGGGGATCGACCTAATCCCCCCTTACGTGCTGCCGATCTTACTGCTA
391 GAGGCAGAATGCACAAGCCGGGGATCGACCTAAT-CCCCC-TACGTGCTGCCGATCTTACTGCCA
* *
27870307 CAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACT-GGGATAAA
454 CAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCT-GTATGCTTAGACTGGGGATAAA
* * *
27870370 CTCCGTATGCCTAAGTCATCGCATGAAATGAGCGTGCGAGCACTCAGTCGGTCGGAGAGGCATAA
518 CTCCGTATG-CTAAGTCAACCCATGAAACGAGCGTGCGAGCACTCAGTCGGTCGGAGAGGCATAA
27870435 TGTGCAAACCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTGTCAATCCCGCTGTCGTTCCTACTG
582 TGTGCAAACCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTGTCAATCCCGCTGTCGTTCCTACTG
27870500 CCATAACCCTCGGGTCCGGCTTGGTT
647 CCATAACCCTCGGGTCCGGCTTGGTT
*
27870526 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG-C
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* * * * *
27870590 TGGTTGGAGAGGCAGAATGCGCAAG-CTGGGGACC-AGCCTGATCCCCCCTGCGTGCTGTCGATC
66 -GATCGGAGAGGCAGAATGCGCAAGTC-GGGGACCGAGCC-GATCCCCCCTACGTGCTATCGATA
* *
27870653 CTGCT-TTCGCAACACTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
128 CTGCTATT-GCAACACTCGGTCCAGTCCAATCCTAGACTAGGAATGAACTTCGTATGCCTAAGTC
* * * ** ** * *
27870717 AACCCACGAAATGAGTGTTTGGGTGCTGAACTGGTCGGAGAGGCATAATGCACAAGCTGAGGATC
192 AACCCACGAAACGAGCGTTCGGGCACTGAACCAGCCAGAGAGGCATAATGCACAAGCTGAGGATC
27870782 GGCCCGATCCCCCTCTGCGTGCTGT-CGGTCCCGCTGCCACAACCCTCGATCCGACTGAGGCTTA
257 GGCCCGATCCCCCTCTGCGTGCTGTCCGGTCCCGCTGCCACAACCCTCGATCCGACTGAGGCTTA
* * * * *
27870846 GACGTGGAATGAGCTCCGTATGCCTAAGCCCAACCCACGAAACGGGCGTACGGGCGCTCAACT-G
322 GACATGGAATGAACTCCCTATGCCTAAG-CCAACCCACGAAACGGGCGCACGGGCGCTC-ACTCA
* * * * *
27870910 GCCGGAGAGGCAGAATGCACAAGCC-GGGATTCG-GCTCAATCCCCCTGCGTGCTGCTGATCTTG
385 ACCGGAGAGGCAGAATGCACAAGCCGGGGA-TCGACCT-AATCCCCCTACGTGCTGCCGATCTTA
* * * * *
27870973 CTGCCGCAACCTTCGGTCCGGTCTGATCTTAGACTAGGAGTGAACTCTGTATGCTTAGACTGGGG
448 CTGCCACAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGG
*
27871038 ATGAACTCCGTATGCTAAGTCAACCCATGAAACGAGC
513 ATAAACTCCGTATGCTAAGTCAACCCATGAAACGAGC
27871075 TTACGGATGC
Statistics
Matches: 480, Mismatches: 59, Indels: 22
0.86 0.11 0.04
Matches are distributed among these distances:
672 86 0.18
673 95 0.20
674 297 0.62
675 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (672 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
GATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGAGCCGATCCCCCCTACGTGCTATCGATACTG
CTATTGCAACACTCGGTCCAGTCCAATCCTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACC
CACGAAACGAGCGTTCGGGCACTGAACCAGCCAGAGAGGCATAATGCACAAGCTGAGGATCGGCC
CGATCCCCCTCTGCGTGCTGTCCGGTCCCGCTGCCACAACCCTCGATCCGACTGAGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCACGGGCGCTCACTCAACCGGA
GAGGCAGAATGCACAAGCCGGGGATCGACCTAATCCCCCTACGTGCTGCCGATCTTACTGCCACA
ACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATAAACTC
CGTATGCTAAGTCAACCCATGAAACGAGCGTGCGAGCACTCAGTCGGTCGGAGAGGCATAATGTG
CAAACCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTGTCAATCCCGCTGTCGTTCCTACTGCCAT
AACCCTCGGGTCCGGCTTGGTT
Found at i:27871029 original size:26 final size:26
Alignment explanation
Indices: 27871000--27871053 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
27870990 CCGGTCTGAT
*
27871000 CTTAGACTAGGAG-TGAACTCTGTATG
1 CTTAGACT-GGAGATGAACTCCGTATG
*
27871026 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
27871052 CT
1 CT
27871054 AAGTCAACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:27871218 original size:26 final size:26
Alignment explanation
Indices: 27871179--27871231 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27871169 GGCTCAAACT
27871179 CTTAGACTATGAATAAACTCCATATG
1 CTTAGACTATGAATAAACTCCATATG
* *
27871205 CTTAGAC-ATGGAATGAACTCCCTATG
1 CTTAGACTAT-GAATAAACTCCATATG
27871231 C
1 C
27871232 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
CTTAGACTATGAATAAACTCCATATG
Found at i:27871507 original size:159 final size:158
Alignment explanation
Indices: 27871204--27871499 Score: 394
Period size: 159 Copynumber: 1.9 Consensus size: 158
27871194 AACTCCATAT
* *
27871204 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACATGCAAGCGCTCAG
* * * * *
27871269 CCGACCGGAGTGGCAGAATGTGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGTTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
27871334 TACTGCCACAACCCTCGGTCTGGCTGGG
131 TACTGCCACAACCCTCGGTCTGGCTGGG
* * * * *
27871362 GCTTAGACATGGAATGAACTCCCTCTGCCTAAGCCAACCCATGAAACGGACGTGTAGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACATGCA-AGCGCTCA
** ** * * * * *
27871427 GTTGGTCGGAGAGGTAGAATGCGCAAGCTGAGGATCGGCCCAGTCCCTCCTGCGTGCTGTTGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCTGCATGCTGTCGATC
27871492 CTACTGCC
130 CTACTGCC
27871500 GTAACCCTTG
Statistics
Matches: 116, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
158 52 0.45
159 64 0.55
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACATGCAAGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
TACTGCCACAACCCTCGGTCTGGCTGGG
Found at i:27871526 original size:159 final size:158
Alignment explanation
Indices: 27871204--27871548 Score: 388
Period size: 159 Copynumber: 2.2 Consensus size: 158
27871194 AACTCCATAT
* *
27871204 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACATGCAAGCGCTCAG
* * * * *
27871269 CCGACCGGAGTGGCAGAATGTGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGTTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
* * *
27871334 TACTGCCACAACCCTCGGTCTGGCTGGG
131 TACTGCCACAACCCTCGGTCAGGCTCGA
* * * * *
27871362 GCTTAGACATGGAATGAACTCCCTCTGCCTAAGCCAACCCATGAAACGGACGTGTAGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACATGCA-AGCGCTCA
** ** * * * * *
27871427 GTTGGTCGGAGAGGTAGAATGCGCAAGCTGAGGATCGGCCCAGTCCCTCCTGCGTGCTGTTGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCTGCATGCTGTCGATC
** *
27871492 CTACTGCCGTAACCCTTGGTCAGG-TCCGA
130 CTACTGCCACAACCCTCGGTCAGGCT-CGA
* *
27871521 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
27871549 TTAGATTGGA
Statistics
Matches: 154, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 54 0.35
159 100 0.65
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACATGCAAGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
TACTGCCACAACCCTCGGTCAGGCTCGA
Found at i:27871932 original size:26 final size:26
Alignment explanation
Indices: 27871903--27871955 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27871893 CCGGTCTGAT
27871903 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27871929 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27871955 C
1 C
27871956 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27872217 original size:158 final size:158
Alignment explanation
Indices: 27871928--27872302 Score: 461
Period size: 158 Copynumber: 2.4 Consensus size: 158
27871918 AACTCCGTAT
* * * *
27871928 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
* * * *
27871993 CCGACCGGAGAGGCAGAATGTGCAAGCTGAGGATCAGCCTGATCCCCTCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGATCCCCTCTGCATGCTGTCGATCC
* * * * *
27872058 CACTGTCGCAACTCTCGGTCCGGTCT-GA
131 CACTGCCACAACCCTCGGT-AGGACTGGA
* * * *
27872086 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
* * * * *
27872150 GCCGACCGAAGAGGCATAATGCGTAAGCCGAGGATC-G-ATCGGTCCCCCTCTGCATGCTGTCGG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCT-GAT-CCCCTCTGCATGCTGTCGA
* *
27872213 TCCCACTGCCACAACCCTCGGTATGACTGGG
128 TCCCACTGCCACAACCCTCGGTAGGACTGGA
*
27872244 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGC
27872303 GCTCGGTCGA
Statistics
Matches: 184, Mismatches: 28, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
156 1 0.01
157 7 0.04
158 175 0.95
159 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGATCCCCTCTGCATGCTGTCGATCC
CACTGCCACAACCCTCGGTAGGACTGGA
Found at i:27872350 original size:158 final size:155
Alignment explanation
Indices: 27871928--27872350 Score: 433
Period size: 158 Copynumber: 2.7 Consensus size: 155
27871918 AACTCCGTAT
* * * *
27871928 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCGG
* * * * *
27871993 CCGACCGGAGAGGCAGAATGTGCAAGCTGAGGATCAGCCT-GATCCCCTCTGCGTGCTGTCGATC
66 CCGA-CGGA-AGGCAGAATGCGTAAGCCGAGGATC--CCTCGGTCCCCTCTGCATGCTGTCGATC
* * * * *
27872057 CCACTGTCGCAACTCTCGGTCCGGTCTGA
127 CCACTGCCACAACCCTCGGTCAGGACTGA
* * * *
27872086 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCACT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCG
* * ** *
27872149 AGCCGACCGAAGAGGCATAATGCGTAAGCCGAGGATCGATCGGTCCCCCTCTGCATGCTGTCGGT
65 -GCCGA-CGGA-AGGCAGAATGCGTAAGCCGAGGATCCCTCGGT-CCCCTCTGCATGCTGTCGAT
* *
27872214 CCCACTGCCACAACCCTCGGT-ATGACTGGG
126 CCCACTGCCACAACCCTCGGTCAGGACT-GA
*
27872244 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCGG
* * *
27872309 TCGATCGGGAATGGTAGAATGCGTAAGCCGAAGA-CCCTCGGT
66 CCGA-C-GGAA-GGCAGAATGCGTAAGCCGAGGATCCCTCGGT
27872351 TCGGTCTGAT
Statistics
Matches: 218, Mismatches: 38, Indels: 18
0.80 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 6 0.03
158 188 0.86
159 23 0.11
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCGG
CCGACGGAAGGCAGAATGCGTAAGCCGAGGATCCCTCGGTCCCCTCTGCATGCTGTCGATCCCAC
TGCCACAACCCTCGGTCAGGACTGA
Found at i:27872412 original size:26 final size:26
Alignment explanation
Indices: 27872361--27872413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27872351 TCGGTCTGAT
**
27872361 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27872387 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27872413 C
1 C
27872414 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27879333 original size:156 final size:157
Alignment explanation
Indices: 27879005--27879467 Score: 430
Period size: 156 Copynumber: 2.9 Consensus size: 157
27878995 AACTCCATTT
* * *
27879005 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATTAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
* **
27879070 CCGGTCAAAGAGGTAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGGCCAAAGAGGTA-AATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* * *
27879135 TGCTGTCAGAACCCTCGATCCGGTCTGA
130 TACTGCCACAACCCTCGATCCGGTCTGA
* * * *
27879163 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGA-CGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA
*** * * * * * *
27879226 GTTGGCCGAAGAGGT-AATGCGCAAGCCGGGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
65 ACCGGCCAAAGAGGTAAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTGTCGATC
* * *
27879290 CTACTGCCACAACCCTCGGTCTGG-CTGGG
129 CTACTGCCACAACCCTCGATCCGGTCT-GA
* * * ** ** *
27879319 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
* ** ** * * * ** * **
27879384 TCTACCGGAGAGGCAGAATGCACAAGTCGGGGATCAAATCGGTCCCCCCTACGTGCTACCGATCC
66 CCGGCCAAAGAGGTA-AATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
*
27879449 TACTGCCGCAACCCTCGAT
130 TACTGCCACAACCCTCGAT
27879468 TCGATCCGAT
Statistics
Matches: 243, Mismatches: 55, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
155 29 0.12
156 76 0.31
157 42 0.17
158 72 0.30
159 24 0.10
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
CCGGCCAAAGAGGTAAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCT
ACTGCCACAACCCTCGATCCGGTCTGA
Found at i:27879508 original size:26 final size:26
Alignment explanation
Indices: 27879485--27879566 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
27879475 GATCTTAGGT
27879485 TGGGGATGAACTTCGTATGGTTAGAC
1 TGGGGATGAACTTCGTATGGTTAGAC
*
27879511 TAGGGATGAACTTCGTATGGTTAGAC
1 TGGGGATGAACTTCGTATGGTTAGAC
*
27879537 TGGGGATGAACTTCGTATGGCTAGAC
1 TGGGGATGAACTTCGTATGGTTAGAC
27879563 TGGG
1 TGGG
27879567 ATTAACTCTG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.23, C:0.12, G:0.35, T:0.29
Consensus pattern (26 bp):
TGGGGATGAACTTCGTATGGTTAGAC
Found at i:27881109 original size:170 final size:171
Alignment explanation
Indices: 27880771--27881111 Score: 375
Period size: 171 Copynumber: 2.0 Consensus size: 171
27880761 GTTGAGCTTT
* * * ** * * * *
27880771 GTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGTGCTCAGCCAGGCGGAGAGGCATAATGTG
1 GTATGACTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCAGCCAGAGAGGCAAAATGCG
* * * * * *
27880836 TAAGTCAGGGATCAGCCAGGTCCCTCTCTGCGTGCTGTCGATCCCGCTGCCGGTCCTGTTGGCAC
66 TAAGCCAGGGATCAGCCAGGTCCCTCTCTACGTGCTGCCGATCCCGCTGCCGGTCATGCTGCCAC
***
27880901 AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCC
131 AACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCC
*
27880942 GTATGACTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCAAAATGCG
1 GTATGACTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCAGCCAGAGAGGCAAAATGCG
* ** * * * *
27881007 TAAGCCGGGGATTGGCCCGGTCTCC-C-CTACGTGCTGCCGATCCTGCTGCTGGTCATGCTGCCG
66 TAAGCCAGGGATCAGCCAGGTC-CCTCTCTACGTGCTGCCGATCCCGCTGCCGGTCATGCTGCCA
* *
27881070 CAACCCTCAGTCC-AGTCCAATCTTAGAC-TGGGAATGAACTCC
130 CAACCCTCAGTCCGACT-CAAGCTTAGACAT-GGAATGAACTCC
27881112 ATAAGCTTAG
Statistics
Matches: 139, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
169 3 0.02
170 61 0.44
171 73 0.53
172 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (171 bp):
GTATGACTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCAGCCAGAGAGGCAAAATGCG
TAAGCCAGGGATCAGCCAGGTCCCTCTCTACGTGCTGCCGATCCCGCTGCCGGTCATGCTGCCAC
AACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCC
Found at i:27881217 original size:367 final size:353
Alignment explanation
Indices: 27880544--27881245 Score: 757
Period size: 367 Copynumber: 1.9 Consensus size: 353
27880534 GTCCCGCTAC
* *
27880544 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCATGA
1 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCATGA
* ** * * * * *
27880609 AACGGGAGTGCGGGTGCTTAGGCGATCGGACAGGCAAAATGCACAAGCTGAGGATCAGCCCGGTC
66 AACGAGAGTGCGGGCACTCAGCCGACCAGACAGGCAAAATGCACAAGCCGAGGATCAGCCCGGTC
* * ** ** *
27880674 CCCCCTATGTGCTGTCGATCATGCTGCCGTAACCCTCGGTCTGGTCTGATCTTATACTGGGAATG
131 CCCCCTATGTGCTGTCGATCATGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATG
* * ** * ** * * *
27880739 AACTCCGTATGCTTAGACTGCGGTTGAGCTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTGC
196 AACTCCATAAGCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
** * ** * *
27880804 AGGTGCTCAGCCAGGCGGAGAGGCATAATGTGTAAGTCAGGGATCAGC-CAGGTCCCTCTCTGCG
261 AGGCACTCAGCCAGGCGGAGAGGCAGAATGCATAAGCCAGGGATCAGCAC-GGTCCC-CCCTGCG
27880868 TGCTGTCGATCCCGCTGCCGGTCCTGTTGG
324 TGCTGTCGATCCCGCTGCCGGTCCTGTTGG
*
27880898 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCATG
1 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAA-CCATG
* * ** * **
27880963 AAACGAGCGTGCGGGCACTCAGCC-AGCCAGAGAGGCAAAATGCGTAAGCCGGGGATTGGCCCGG
65 AAACGAGAGTGCGGGCACTCAGCCGA-CCAGACAGGCAAAATGCACAAGCCGAGGATCAGCCCGG
* *
27881027 TCTCCCCTACGTGCTGCCGATCCTGCTGCTGGTCATGCTGCCGCAACCCTCAGTCCAGTCCAATC
129 TCCCCCCTA--TG-T---G---CTG-T-C-GATCATGCTGCCGCAACCCTCAGTCCAGTCCAATC
27881092 TTAGACTGGGAATGAACTCCATAAGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCC
182 TTAGACTGGGAATGAACTCCATAAGCTTAGAC-TGCGAATGAACTCCGTATGCCTAAGCCAACCC
* * ** *
27881156 ACGAAACGAGGGTGCGGGCACTCAG-TTGATCGGAGAGGCAGAATGCATAAGCC-GAGGATCAGC
246 ACGAAACGAGCGTGCAGGCACTCAGCCAG-GCGGAGAGGCAGAATGCATAAGCCAG-GGATCAGC
27881219 ACGGTCCCCCCTGCGTGCTGTCGATCC
309 ACGGTCCCCCCTGCGTGCTGTCGATCC
27881246 TGCTATCGCA
Statistics
Matches: 281, Mismatches: 49, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
354 57 0.20
355 60 0.21
357 2 0.01
358 1 0.00
361 1 0.00
364 3 0.01
365 1 0.00
366 21 0.07
367 132 0.47
368 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (353 bp):
CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCATGA
AACGAGAGTGCGGGCACTCAGCCGACCAGACAGGCAAAATGCACAAGCCGAGGATCAGCCCGGTC
CCCCCTATGTGCTGTCGATCATGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATG
AACTCCATAAGCTTAGACTGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
AGGCACTCAGCCAGGCGGAGAGGCAGAATGCATAAGCCAGGGATCAGCACGGTCCCCCCTGCGTG
CTGTCGATCCCGCTGCCGGTCCTGTTGG
Found at i:27881471 original size:159 final size:158
Alignment explanation
Indices: 27881115--27881480 Score: 371
Period size: 158 Copynumber: 2.3 Consensus size: 158
27881105 GAACTCCATA
* * *
27881115 AGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGGGTGCGGGCACTC
1 AGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGGGTACGAGCACTC
** * * * * *
27881179 AGTTGATCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCACGGTCCCCCCTGCGTGCTGTCGAT
65 AGCCGATCAGAGAGGCAGAATGCACAAACCGAGGATCAGCACGGTCCCCCCTCCGTGATGTCGAT
* * * * * *
27881244 CCTGCTATCGCAACCTTCGGTTCGGTCTG
130 CCCGCTACCACAACCCTCAGTCCGGTCTG
* * * * * * * *
27881273 ATCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGGGTACGAGCGCTGA
1 AGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGGGTACGAGCACTCA
* * * *
27881338 GCCG-TCCAGAGAGGCATAATGCACAAACCGGGGAT-AGGCTCGGTCCTCCTCTCCGTGATGTCG
66 GCCGAT-CAGAGAGGCAGAATGCACAAACCGAGGATCA-GCACGGTCC-CCCCTCCGTGATGTCG
*
27881401 GTCCCGCTACCACAACCCTCAGTCCGG-CTGG
128 ATCCCGCTACCACAACCCTCAGTCCGGTCT-G
* * *
27881432 GGCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 AGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACG
27881481 GGCGTGTGGG
Statistics
Matches: 165, Mismatches: 38, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 89 0.54
159 74 0.45
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
AGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGGGTACGAGCACTCA
GCCGATCAGAGAGGCAGAATGCACAAACCGAGGATCAGCACGGTCCCCCCTCCGTGATGTCGATC
CCGCTACCACAACCCTCAGTCCGGTCTG
Found at i:27882312 original size:26 final size:26
Alignment explanation
Indices: 27882274--27882326 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27882264 GGCTTAAAAT
27882274 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27882300 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27882326 C
1 C
27882327 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27882644 original size:159 final size:158
Alignment explanation
Indices: 27882299--27882668 Score: 388
Period size: 158 Copynumber: 2.3 Consensus size: 158
27882289 AACTCCGTAT
* * **
27882299 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGTGCCCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACCCAA
* * * * * * *
27882364 CCGACTGGAGAGACAGAATGTGCGAGCCGGGGATCAACCTAGTCCCCCCTATGTGTTGTCGATTC
66 CCGACTGAAAAGACAGAATGCGCAAGCCGGGGATCAACCTAGTCCCCCCTATGTGCTGCCGATCC
*
27882429 TGCTGCCACAACCTTCGGTCCGGTTCGA
131 CGCTGCCACAACCTTCGGTCCGGTTCGA
* ** * **
27882457 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACCCA
* * * ** * *
27882521 GA-CGA-TCGAAAAGGCATAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTTTGTGCTGCCG
65 -ACCGACT-GAAAAGACAGAATGCGCAAGCCGGGGATCAACCTAGTCCCCC-CTATGTGCTGCCG
* * * *
27882584 GTCCCGCTGCCACAATCC-TCGGTTCGGTTGGG
127 ATCCCGCTGCCACAA-CCTTCGGTCCGGTTCGA
* *
27882616 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT
27882669 GCGAGGCGCT
Statistics
Matches: 171, Mismatches: 35, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 87 0.51
159 79 0.46
160 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACCCAA
CCGACTGAAAAGACAGAATGCGCAAGCCGGGGATCAACCTAGTCCCCCCTATGTGCTGCCGATCC
CGCTGCCACAACCTTCGGTCCGGTTCGA
Found at i:27882725 original size:159 final size:157
Alignment explanation
Indices: 27882299--27882726 Score: 407
Period size: 159 Copynumber: 2.7 Consensus size: 157
27882289 AACTCCGTAT
* * * *
27882299 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGTGCCCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * ** * * *
27882364 CCGACTGGAGAGACAGAATGT-GC-GAGCCGGGGATCAACCTAGTCCCCCCTATGTGTTGTCGAT
66 CCGAC-CGAGAGGCAGAAT-TCGCAG-GCTGGGGATCGGCCTGGTCCCCCCTATGTGCTGCCGAT
* *
27882427 TCTGCTGCCACAACCTTCGGTCCGGTTCGA
128 CCCGCTGCCACAACCTTCGGTCCGGTTCGA
* ** * * * *
27882457 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * * * *
27882521 GACGATCGAAAAGGCATAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTTTGTGCTGCCGGT
65 GCCGACCG-AGAGGCAGAATTCGCAGGCTGGGGATCGGCCTGGTCCCCC-CTATGTGCTGCCGAT
* * *
27882586 CCCGCTGCCACAATCC-TCGGTTCGGTTGGG
128 CCCGCTGCCACAA-CCTTCGGTCCGGTTCGA
* *
27882616 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-AGGCGCTCA
* * *
27882681 GCCGGCCAGAGAGGCAGAATTCACAGGCTAGGGATCGGCC-GGTCCC
65 GCCGACC-GAGAGGCAGAATTCGCAGGCTGGGGATCGGCCTGGTCCC
27882727 TCCTGCTACC
Statistics
Matches: 211, Mismatches: 50, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 84 0.40
159 85 0.40
160 39 0.18
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGACCGAGAGGCAGAATTCGCAGGCTGGGGATCGGCCTGGTCCCCCCTATGTGCTGCCGATCCC
GCTGCCACAACCTTCGGTCCGGTTCGA
Found at i:27883529 original size:26 final size:26
Alignment explanation
Indices: 27883491--27883541 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27883481 GGCTCAAAAT
*
27883491 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27883517 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
27883542 AACTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27884028 original size:26 final size:26
Alignment explanation
Indices: 27883992--27884047 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
27883982 CCGGTCCAAT
*
27883992 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
27884018 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
27884044 CTTA
1 CTTA
27884048 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:27884387 original size:26 final size:26
Alignment explanation
Indices: 27884358--27884409 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27884348 CTGATTCGAT
*
27884358 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27884384 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27884410 GCTAATGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27884894 original size:26 final size:26
Alignment explanation
Indices: 27884858--27884910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27884848 CCGGCCCGAT
27884858 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27884884 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27884910 C
1 C
27884911 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27885617 original size:26 final size:26
Alignment explanation
Indices: 27885579--27885631 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27885569 GGCTCAAAAT
27885579 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27885605 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
27885631 C
1 C
27885632 CTATGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27886420 original size:353 final size:353
Alignment explanation
Indices: 27885918--27886557 Score: 849
Period size: 353 Copynumber: 1.8 Consensus size: 353
27885908 TTGGTCTGAT
*** *
27885918 TGGGGATTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAATGGGCGTGCAGGTGC
1 TGGGGATTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACCAGCGTGCAGGCGC
* ** * *
27885983 TTAGTCGGCTAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCG
66 TCAACCGGCTAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGCCG
* *
27886048 ATCCTGCTACCGTAACCCTCGATCCGGTCTGAT-TTAGACTGGGAATGAGCTCCGTATGCTTAGA
131 ATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
27886112 -TTGGGGATGAACTCCATATACCTAA-CTCAACCCATGAAATGAG-AGTGCTGG-TGCTCAGCCG
196 CAT-GGAATGAACTCC-TATACCTAAGC-CAACCCATGAAACGAGCA-TGC-GGATGCTCAGCCG
* * * * *
27886173 GCCCGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCATCTCTTCGTACTGTCGATCCCG
256 ACCCGAAAGGCAGAATGCACAAACCGGGGATCAGCCTGGTCCATCTCTTCGTACTGTCGATCCCG
27886238 CTGCCATCCCGCTGCCATAACCCTCAATCTGGC
321 CTGCCATCCCGCTGCCATAACCCTCAATCTGGC
* * ** * * *
27886271 TGGGGCTTAGACATGGAATGAACTCCGTATGGCTAAGCTAACCGATGAAACCAGCGTGCGGGCGC
1 TGGGGATTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACCAGCGTGCAGGCGC
* * * * * *
27886336 TCAACCGGTTGGAAAGGCAGAATGTGCAAGCTGGGGATCGACTCGGTCCCCCCTACGTGCTGCCG
66 TCAACCGGCTAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGCCG
* * * *
27886401 ATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
131 ATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
27886466 CATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGATGCTCAGCTGACCGG
196 CATGGAATGAACTCCTATACCTAAGCCAACCCATGAAACGAGCATGCGGATGCTCAGCCGACCCG
27886531 AAAGGCAGAATGCACAAACCGGGGATC
261 AAAGGCAGAATGCACAAACCGGGGATC
27886558 GACCTGATCC
Statistics
Matches: 243, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
352 2 0.01
353 197 0.81
354 43 0.18
355 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (353 bp):
TGGGGATTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACCAGCGTGCAGGCGC
TCAACCGGCTAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGCCG
ATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CATGGAATGAACTCCTATACCTAAGCCAACCCATGAAACGAGCATGCGGATGCTCAGCCGACCCG
AAAGGCAGAATGCACAAACCGGGGATCAGCCTGGTCCATCTCTTCGTACTGTCGATCCCGCTGCC
ATCCCGCTGCCATAACCCTCAATCTGGC
Found at i:27886472 original size:26 final size:25
Alignment explanation
Indices: 27886434--27886485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
27886424 CTGGTCTGAT
27886434 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCC-TATG
27886460 CTTAGACAT-GGAATGAACTCCTATG
1 CTTAGAC-TGGGAATGAACTCCTATG
27886485 C
1 C
27886486 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 19 0.76
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:27886588 original size:183 final size:184
Alignment explanation
Indices: 27886275--27886643 Score: 483
Period size: 183 Copynumber: 2.0 Consensus size: 184
27886265 TCTGGCTGGG
* * * * *
27886275 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCTAACCGATGAAACCAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCATGCGGACGCTCAA
*** ** * * * * *
27886340 CCGGTTGGAAAGGCAGAATGTGCAAGCTGGGGATCGACTCGGTCCCCCCTACGTGCTGCCGATCC
66 CCGACCGGAAAGGCAGAATGCACAAACCGGGGATCGACTCGATCCCCACTACGTGCTACCGATCC
* **
27886405 TGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
27886459 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCATGCGGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCATGCGGACGCTCAA
* *
27886523 CTGACCGGAAAGGCAGAATGCACAAACCGGGGATCGAC-CTGATCCCTCAC-ACGTGCTATCGAT
66 CCGACCGGAAAGGCAGAATGCACAAACCGGGGATCGACTC-GATCCC-CACTACGTGCTACCGAT
*
27886586 CCTGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGTACTCCGTAT
129 CCTGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
27886642 GC
1 GC
27886644 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
182 1 0.01
183 134 0.84
184 24 0.15
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCATGCGGACGCTCAA
CCGACCGGAAAGGCAGAATGCACAAACCGGGGATCGACTCGATCCCCACTACGTGCTACCGATCC
TGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:27886983 original size:26 final size:26
Alignment explanation
Indices: 27886932--27886984 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27886922 CCAGTCCGAT
**
27886932 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27886958 CTTAGACT-GGAGATGAACTCCATATG
1 CTTAGACTGGGA-ATGAACTCCATATG
27886984 C
1 C
27886985 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27887692 original size:26 final size:26
Alignment explanation
Indices: 27887654--27887706 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27887644 CGCTCAAACT
27887654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27887680 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27887706 C
1 C
27887707 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27888045 original size:26 final size:26
Alignment explanation
Indices: 27888016--27888068 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27888006 CTGATCCGAT
27888016 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
27888042 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27888068 C
1 C
27888069 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27888533 original size:26 final size:26
Alignment explanation
Indices: 27888504--27888556 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27888494 CCAATCTGAT
27888504 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
27888530 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
27888556 C
1 C
27888557 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:27889258 original size:26 final size:26
Alignment explanation
Indices: 27889220--27889272 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27889210 GGCTCAAACT
*
27889220 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27889246 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27889272 C
1 C
27889273 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27889587 original size:158 final size:157
Alignment explanation
Indices: 27889245--27889587 Score: 363
Period size: 158 Copynumber: 2.2 Consensus size: 157
27889235 AACTTCGTAT
* * *
27889245 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGTGTGGGCGCTTAGCC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGTGCGGGCGCTCAACC
* * * * *
27889310 GGTCGGAGAGGCAGAATGCACAAGACGGGGATCGGCCCGATCCCCCTCTACATGCTGCCGGTCCC
66 GGCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCTCTACATGCTACCGATACC
* *
27889375 GCTACCACAACCCTCAGTTCGACTGGG
131 GCTACCACAACCCTCAGTCCGACTGGA
* * * *
27889402 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAG--TGCGGGCGCTCAA
* ** * * * *
27889467 CCGGCCGGAGAGGTAGAATGTGCATGCCGGGGATCGACCC-AGTCCCCC-CTACGTGCTATCGAT
64 CCGGCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGA-TCCCCCTCTACATGCTACCGAT
* * * *
27889530 ACTGCTGCCGCAACCCTC-GATCCGGTCT-GA
128 ACCGCTACCACAACCCTCAG-TCC-GACTGGA
*
27889560 TCTTAGA-ATTGGAATGAACTCCGTATGC
1 GCTTAGACA-TGGAATGAACTCCGTATGC
27889588 TTAGACTGGA
Statistics
Matches: 153, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
157 49 0.32
158 53 0.35
159 51 0.33
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGTGCGGGCGCTCAACC
GGCCGGAGAGGCAGAATGCACAAGACGGGGATCGACCCGATCCCCCTCTACATGCTACCGATACC
GCTACCACAACCCTCAGTCCGACTGGA
Found at i:27890535 original size:59 final size:58
Alignment explanation
Indices: 27890209--27890545 Score: 450
Period size: 59 Copynumber: 5.8 Consensus size: 58
27890199 TCTTGTGTAG
* **
27890209 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCATTTTTTTGAAATTTATTTTTAA
* *
27890267 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAA-TATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAACCATTTTTTTGAAATTTATTTTTAA
* * **
27890324 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTTTTGGAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCA--TTTTTTT-GAAATTT-ATTTTTAA
*
27890385 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCATTTTTTTG-AAATTTATTTTTAA
* *
27890444 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTAAATTTATTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCATTTTTTTGAAATTTA-TTTTTAA
*
27890503 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAA-TATTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAACCATTTTTTTG
27890546 TTGGAAATTT
Statistics
Matches: 255, Mismatches: 14, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
57 57 0.22
58 47 0.18
59 94 0.37
60 18 0.07
61 39 0.15
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCATTTTTTTGAAATTTATTTTTAA
Found at i:27890607 original size:17 final size:17
Alignment explanation
Indices: 27890587--27890641 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
27890577 AGAATACATA
27890587 AAAAAATAAAGAAAAAT
1 AAAAAATAAAGAAAAAT
*
27890604 AAAAAATAAAGAAAAGT
1 AAAAAATAAAGAAAAAT
*
27890621 AAAACAA-AAATAAAAAT
1 AAAA-AATAAAGAAAAAT
27890638 AAAA
1 AAAA
27890642 TAAAGATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 32 0.94
18 2 0.06
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAAAATAAAGAAAAAT
Found at i:27890618 original size:11 final size:10
Alignment explanation
Indices: 27890586--27890645 Score: 54
Period size: 11 Copynumber: 6.1 Consensus size: 10
27890576 TAGAATACAT
27890586 AAAAAAATAA
1 AAAAAAATAA
*
27890596 AGAAAAAT--
1 AAAAAAATAA
27890604 -AAAAAATAA
1 AAAAAAATAA
* *
27890613 AGAAAAGTAA
1 AAAAAAATAA
27890623 AACAAAAATAA
1 AA-AAAAATAA
27890634 AAATAAAATAA
1 AAA-AAAATAA
27890645 A
1 A
27890646 GATAAAAAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.15
10 16 0.41
11 17 0.44
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.12
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:27890618 original size:27 final size:27
Alignment explanation
Indices: 27890588--27890640 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
27890578 GAATACATAA
*
27890588 AAAAAT-AAAGAAAAATAAAAAATAAAG
1 AAAAATAAAACAAAAAT-AAAAATAAAG
*
27890615 AAAAGTAAAACAAAAATAAAAATAAA
1 AAAAATAAAACAAAAATAAAAATAAA
27890641 ATAAAGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.81, C:0.02, G:0.06, T:0.11
Consensus pattern (27 bp):
AAAAATAAAACAAAAATAAAAATAAAG
Found at i:27890650 original size:17 final size:16
Alignment explanation
Indices: 27890589--27890653 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
27890579 AATACATAAA
*
27890589 AAAATAAAGAAAAATAA
1 AAAATAAAGAAAAA-AT
*
27890606 AAAATAAAG-AAAAGT
1 AAAATAAAGAAAAAAT
* *
27890621 AAAACAAAAATAAAAAT
1 AAAATAAAGA-AAAAAT
27890638 AAAATAAAGATAAAAA
1 AAAATAAAGA-AAAAA
27890654 GAATATTAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
15 7 0.18
16 4 0.10
17 28 0.72
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAATAAAGAAAAAAT
Found at i:27890703 original size:12 final size:11
Alignment explanation
Indices: 27890678--27890721 Score: 56
Period size: 10 Copynumber: 4.1 Consensus size: 11
27890668 CCTAATCTAG
27890678 TAAATAAAAAA
1 TAAATAAAAAA
27890689 TAAATAAACAAA
1 TAAATAAA-AAA
*
27890701 TAAAT-GAAAA
1 TAAATAAAAAA
27890711 TAAA-AAAAAA
1 TAAATAAAAAA
27890721 T
1 T
27890722 TCAAAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 12 0.41
11 9 0.31
12 8 0.28
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (11 bp):
TAAATAAAAAA
Found at i:27890710 original size:23 final size:20
Alignment explanation
Indices: 27890678--27890721 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 20
27890668 CCTAATCTAG
27890678 TAAATAAAAAATAAATAAACAAA
1 TAAAT-AAAAATAAA-AAA-AAA
*
27890701 TAAATGAAAATAAAAAAAAA
1 TAAATAAAAATAAAAAAAAA
27890721 T
1 T
27890722 TCAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 3 0.15
22 8 0.40
23 5 0.25
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (20 bp):
TAAATAAAAATAAAAAAAAA
Found at i:27891081 original size:20 final size:20
Alignment explanation
Indices: 27891053--27891097 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
27891043 GGATTTTCGT
*
27891053 CGGATTCTGGAAAATGTCAC
1 CGGAATCTGGAAAATGTCAC
*
27891073 CGGAATCTGGAAAATTTCAC
1 CGGAATCTGGAAAATGTCAC
*
27891093 TGGAA
1 CGGAA
27891098 GTTCACCGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (20 bp):
CGGAATCTGGAAAATGTCAC
Found at i:27891758 original size:11 final size:12
Alignment explanation
Indices: 27891735--27891863 Score: 56
Period size: 11 Copynumber: 11.6 Consensus size: 12
27891725 TATATTACAA
*
27891735 AATAA-AAAAAT
1 AATAATAAATAT
27891746 AATAAT-AATAT
1 AATAATAAATAT
27891757 AATAATAAATAT
1 AATAATAAATAT
27891769 -ATAACT--ATAT
1 AATAA-TAAATAT
27891779 -A-AATAAA-AT
1 AATAATAAATAT
*
27891788 ACAT-ATAAATCT
1 A-ATAATAAATAT
*
27891800 AAT-CT-AATA-
1 AATAATAAATAT
27891809 AATACATAAATAT
1 AATA-ATAAATAT
*
27891822 -ATACATATAT-T
1 AATA-ATAAATAT
27891833 AATACA-AAATAAT
1 AATA-ATAAAT-AT
27891846 AATAATAAATAT
1 AATAATAAATAT
27891858 AA-AATA
1 AATAATA
27891864 CAAAAGAAAA
Statistics
Matches: 94, Mismatches: 7, Indels: 34
0.70 0.05 0.25
Matches are distributed among these distances:
8 1 0.01
9 7 0.07
10 9 0.10
11 37 0.39
12 31 0.33
13 9 0.10
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:27891770 original size:14 final size:15
Alignment explanation
Indices: 27891753--27891865 Score: 62
Period size: 16 Copynumber: 7.7 Consensus size: 15
27891743 AATAATAATA
27891753 ATATAATA-ATAAAT
1 ATATAATACATAAAT
*
27891767 ATATAACTATATAAAT
1 ATATAA-TACATAAAT
27891783 A-A-AATACATATAA-
1 ATATAATACATA-AAT
*
27891796 ATCTAAT-CTAATAAAT
1 ATATAATAC--ATAAAT
* * *
27891812 ACATAAATATATACAT
1 ATAT-AATACATAAAT
27891828 ATATTAATACA-AAAT
1 ATA-TAATACATAAAT
27891843 A-ATAATA-ATAAAT
1 ATATAATACATAAAT
*
27891856 ATAAAATACA
1 ATATAATACA
27891866 AAAGAAAAAG
Statistics
Matches: 75, Mismatches: 10, Indels: 27
0.67 0.09 0.24
Matches are distributed among these distances:
12 1 0.01
13 16 0.21
14 17 0.23
15 13 0.17
16 24 0.32
17 4 0.05
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (15 bp):
ATATAATACATAAAT
Found at i:27891785 original size:45 final size:46
Alignment explanation
Indices: 27891734--27891863 Score: 115
Period size: 53 Copynumber: 2.7 Consensus size: 46
27891724 ATATATTACA
27891734 AAATAAAAA-AATAATAATAATATAATAATAAATATATA-ACTATAT
1 AAATAAAAACAATAATAATAATATAATAATAAATATATACA-TATAT
27891779 AAATAAAATACATATAAATCTAATCTAATA-AATACATAAATATATACATATAT
1 AAATAAAA-ACA-AT-AA--TAA--TAATATAATA-ATAAATATATACATATAT
* *
27891832 TAATACAAAATAATAATAATAAATATAA-AATA
1 AAATA-AAAACAATAATAAT-AATATAATAATA
27891864 CAAAAGAAAA
Statistics
Matches: 70, Mismatches: 2, Indels: 24
0.73 0.02 0.25
Matches are distributed among these distances:
45 8 0.11
46 1 0.01
47 5 0.07
48 7 0.10
49 7 0.10
51 5 0.07
52 6 0.09
53 27 0.39
54 4 0.06
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (46 bp):
AAATAAAAACAATAATAATAATATAATAATAAATATATACATATAT
Found at i:27891886 original size:27 final size:27
Alignment explanation
Indices: 27891833--27891886 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
27891823 TACATATATT
* * * * *
27891833 AATACAAAATAATAATAATAAATATAA
1 AATACAAAAGAAAAAGAAAAAAAATAA
27891860 AATACAAAAGAAAAAGAAAAAAAATAA
1 AATACAAAAGAAAAAGAAAAAAAATAA
27891887 TACAGGATAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.17
Consensus pattern (27 bp):
AATACAAAAGAAAAAGAAAAAAAATAA
Found at i:27892062 original size:1 final size:1
Alignment explanation
Indices: 27892051--27892144 Score: 98
Period size: 1 Copynumber: 94.0 Consensus size: 1
27892041 AACATTGTTA
* * * * * *
27892051 TTTTTTGTTTTTTTTTTTGTTTTTTTTTGTTTTTGTTTTTTTTTTTGTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
27892116 TTTTGTTTTTTTGTGTTTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
27892145 GACCAAAGCT
Statistics
Matches: 73, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 73 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:27892064 original size:10 final size:10
Alignment explanation
Indices: 27892045--27892144 Score: 123
Period size: 10 Copynumber: 9.8 Consensus size: 10
27892035 CAACTCAACA
27892045 TTGTTATTTTT
1 TTGTT-TTTTT
*
27892056 TGTTTTTTTTT
1 T-TGTTTTTTT
27892067 TTGTTTTTTT
1 TTGTTTTTTT
27892077 TTGTTTTTGTT
1 TTGTTTTT-TT
27892088 TT-TTTTTTT
1 TTGTTTTTTT
27892097 GTTGTTTTTTT
1 -TTGTTTTTTT
*
27892108 TTTTTTTTTT
1 TTGTTTTTTT
27892118 TTGTTTTTTT
1 TTGTTTTTTT
*
27892128 GTG-TTTTTT
1 TTGTTTTTTT
27892137 TTGTTTTT
1 TTGTTTTT
27892145 GACCAAAGCT
Statistics
Matches: 78, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
9 10 0.13
10 47 0.60
11 18 0.23
12 3 0.04
ACGTcount: A:0.01, C:0.00, G:0.11, T:0.88
Consensus pattern (10 bp):
TTGTTTTTTT
Found at i:27892092 original size:28 final size:29
Alignment explanation
Indices: 27892052--27892145 Score: 145
Period size: 30 Copynumber: 3.2 Consensus size: 29
27892042 ACATTGTTAT
27892052 TTTTTGTTTTTTTTTTTGT-TTTTTTTTG
1 TTTTTGTTTTTTTTTTTGTGTTTTTTTTG
*
27892080 TTTTTGTTTTTTTTTTTGTTGTTTTTTTTT
1 TTTTTGTTTTTTTTTTTG-TGTTTTTTTTG
*
27892110 TTTTTTTTTTGTTTTTTTGTGTTTTTTTTG
1 TTTTTGTTTT-TTTTTTTGTGTTTTTTTTG
27892140 TTTTTG
1 TTTTTG
27892146 ACCAAAGCTC
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
28 18 0.31
29 1 0.02
30 32 0.54
31 8 0.14
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (29 bp):
TTTTTGTTTTTTTTTTTGTGTTTTTTTTG
Found at i:27892117 original size:43 final size:42
Alignment explanation
Indices: 27892051--27892138 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 42
27892041 AACATTGTTA
*
27892051 TTTTTTGTTTTTTTTTTTGTTTTTTT-TTGTTTTTGTTTTTTT
1 TTTTTTGTTTTTTTTTTTGTTTTTTTGTT-TTTTTGTGTTTTT
*
27892093 TTTTGTTGTTTTTTTTTTTTTTTTTTTGTTTTTTTGTGTTTTT
1 TTTT-TTGTTTTTTTTTTTGTTTTTTTGTTTTTTTGTGTTTTT
27892136 TTT
1 TTT
27892139 GTTTTTGACC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
42 4 0.10
43 36 0.86
44 2 0.05
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (42 bp):
TTTTTTGTTTTTTTTTTTGTTTTTTTGTTTTTTTGTGTTTTT
Found at i:27892124 original size:51 final size:52
Alignment explanation
Indices: 27892045--27892144 Score: 159
Period size: 51 Copynumber: 1.9 Consensus size: 52
27892035 CAACTCAACA
* *
27892045 TTGTTATTTTTTGTTTTTTTTTTTGTTTTTTTTTGTTTTTGTTTTTTTTTTTG
1 TTGTTATTTTTTGTTTTTTTTTTTGTTTTTTTGTGTTTTT-TTTGTTTTTTTG
27892098 TTGTT-TTTTTT-TTTTTTTTTTTGTTTTTTTGTGTTTTTTTTGTTTTT
1 TTGTTATTTTTTGTTTTTTTTTTTGTTTTTTTGTGTTTTTTTTGTTTTT
27892145 GACCAAAGCT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
50 8 0.18
51 26 0.58
52 6 0.13
53 5 0.11
ACGTcount: A:0.01, C:0.00, G:0.11, T:0.88
Consensus pattern (52 bp):
TTGTTATTTTTTGTTTTTTTTTTTGTTTTTTTGTGTTTTTTTTGTTTTTTTG
Found at i:27893574 original size:26 final size:26
Alignment explanation
Indices: 27893536--27893588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27893526 GTTGACTTAG
*
27893536 GCGTACGGGGTTCATCCCCAGTCTAA
1 GCGTACGGAGTTCATCCCCAGTCTAA
*
27893562 GCGTACGGAGTTCATTCCCAGTCTAA
1 GCGTACGGAGTTCATCCCCAGTCTAA
27893588 G
1 G
27893589 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (26 bp):
GCGTACGGAGTTCATCCCCAGTCTAA
Found at i:27893857 original size:159 final size:158
Alignment explanation
Indices: 27893626--27893957 Score: 414
Period size: 159 Copynumber: 2.1 Consensus size: 158
27893616 TAGGATCGAT
* * *
27893626 AGCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGACTGAGCA
1 AGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGATCGACTAAGCA
* * *
27893690 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCCTTCCAAGTCTAAGCCCCAGCC
66 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAA-CCCCAGCC
* * ***
27893755 GGACCTAAGGTTGTGGCAGTGGGACCAGC
130 GGACCGAAGGTTATGGCAACAGGACCAGC
* * * *
27893784 AGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTACGTATTCTACCTTTCCGATCGGCTAAGCG
1 AGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGATCGACTAAGCA
* * * * * * *
27893849 TCCGCACGCTCGTTTCGTGGGTTGGGTTAGGTATACGAAGTTCATTCCATGTCTAACCCCAGCCG
66 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAACCCCAGCCG
* * **
27893914 GATCGAGGGTTATGGCAACAGGACTGGC
131 GACCGAAGGTTATGGCAACAGGACCAGC
27893942 AGCACGCAGAGGGGGA
1 AGCACGCAGAGGGGGA
27893958 CCGAGTCGAT
Statistics
Matches: 147, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 53 0.36
159 94 0.64
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.20
Consensus pattern (158 bp):
AGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGATCGACTAAGCA
CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAACCCCAGCCG
GACCGAAGGTTATGGCAACAGGACCAGC
Found at i:27894210 original size:26 final size:26
Alignment explanation
Indices: 27894160--27894212 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27894150 GTTGGCTTAG
*
27894160 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
27894186 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
27894212 G
1 G
27894213 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:27894399 original size:26 final size:26
Alignment explanation
Indices: 27894370--27894422 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27894360 GTTGACTTAG
*
27894370 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
27894396 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27894422 G
1 G
27894423 ATCTAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.