Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 294 of 402
Found at i:27894854 original size:158 final size:157
Alignment explanation
Indices: 27894460--27895055 Score: 495
Period size: 158 Copynumber: 3.8 Consensus size: 157
27894450 TAGGATCGAT
* * * * * * * * * **
27894460 AGCACGCAGGGGGGA-TCGGGCTGATCCGTGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGTG
1 AGCACGTAGAGGGGACT-GGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCC-GCTGAACG
* * * * *
27894524 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCAAAGCCCCAGTC
64 CCCGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
* * *
27894589 GGATCGAGAGTTGTGGTAGCGGGACCGAC
129 GGATCGAGGGTTGTGGCAGCGAGACCGAC
* * * * * * * *
27894618 AGCACGTAGAGGGGGA-TCGGGCTGATCCCCGACTTGCACATTTTACCTCTCCGACCGCTGAACG
1 AGCACGTAGA-GGGGACT-GGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGCTGAACG
* *
27894682 CCC-ACACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
64 CCCGA-ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
**
27894746 CGGATCGAGGGTTGTGGCAGCGAGACCGGG
128 CGGATCGAGGGTTGTGGCAGCGAGACCGAC
* * * * * *
27894776 AACACGTAGAGGGGACTGAGCCAATCCCTGGCTTACGCATTATGCCTCTTCGGCCGACTCAATGC
1 AGCACGTAGAGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCG-CTGAACGC
* * * * ** *
27894841 CCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATTGGAC
65 CCGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGCCCTAG-C
* * * *
27894904 CGGACCGAGGGTTGTGGCAG-TAGGATCGAT
128 CGGATCGAGGGTTGTGGCAGCGA-GACCGAC
* * * * * * * * * *
27894934 AGCACGCAGGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTTTTCGGCCTGTTGAGCAC
1 AGCACGTAGAGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCC-GCTGAACGC
* * *
27894999 CCGCAA-GCTCGTTTCGTGGGTTGGATTAGGCATATGGAGTTCATTCCATGTCTAAGC
65 CCG-AACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
27895056 ATATGGAGTT
Statistics
Matches: 358, Mismatches: 68, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
157 37 0.10
158 276 0.77
159 45 0.13
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
AGCACGTAGAGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGCTGAACGCC
CGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
ATCGAGGGTTGTGGCAGCGAGACCGAC
Found at i:27895064 original size:26 final size:26
Alignment explanation
Indices: 27895028--27895080 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27895018 GTTGGATTAG
27895028 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
27895054 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
27895080 G
1 G
27895081 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:27895273 original size:26 final size:26
Alignment explanation
Indices: 27895237--27895290 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
27895227 GTTGAGTTAG
27895237 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
27895263 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27895289 GC
1 GC
27895291 TCTAACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27895616 original size:26 final size:26
Alignment explanation
Indices: 27895580--27895632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27895570 GTTGGCTTAG
27895580 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
27895606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27895632 G
1 G
27895633 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27899093 original size:123 final size:123
Alignment explanation
Indices: 27898848--27899081 Score: 423
Period size: 123 Copynumber: 1.9 Consensus size: 123
27898838 TGAGGATGTG
* * *
27898848 CTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGTGCATCCTGCCTCTCTGGTCGACTGAGC
1 CTTGAACCCACCTACCACCCGTTCAATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGC
27898913 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTAAA
66 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTAAA
*
27898971 CTTGAACCCACCTACCACCCGTTCAATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGC
1 CTTGAACCCACCTACCACCCGTTCAATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGC
*
27899036 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
66 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
27899082 TCCCAGTCTA
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 106 1.00
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.26
Consensus pattern (123 bp):
CTTGAACCCACCTACCACCCGTTCAATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAATCTAAA
Found at i:27899293 original size:158 final size:159
Alignment explanation
Indices: 27898996--27899558 Score: 584
Period size: 159 Copynumber: 3.6 Consensus size: 159
27898986 CACCCGTTCA
* * * **
27898996 ATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * ** * *
27899061 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAAAATGGACTGGACTGAGGGTTGTGGTAGTAGGA
66 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGACTGGACTGAGGGTTGTGGCAGCAGGA
*
27899126 TCGGCAGCACGCAAGGGGGACCGGAG-CG
131 TCGACAGCACGCAAGGGGGACCGGAGCCG
* * * * *
27899154 ATCCTCGGCTTGCGCATTTTGCCTCTCC-AGCCGGTTGAGCGCCCGCACGCCCGTTTTC-TAGGT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGT
* * * ** *
27899217 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAGGGCCCAG-CTGGACCGAGGGTTGTGGCAGC
64 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTA-AGAACAGACTGGACTGAGGGTTGTGGCAGC
* * * * *
27899280 GGGACCGATAGCACGTAAAGGGGGATCGG-GCCG
127 AGGATCGACAGCACG-CAAGGGGGACCGGAGCCG
* * * ** *
27899313 ATCCCCGGCTTGCGCATTATGGCTCTCCGACTGGCCCAGCGCCCGCACGCTCGTTTCGTGGGATG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
27899378 ACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATTGGATTGAGGGTTGTGGCAGCAGGA
66 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGACTGGACTGAGGGTTGTGGCAGCAGGA
* *
27899443 TGGACAGCACGC-AGGGGGACC-GAGTCG
131 TCGACAGCACGCAAGGGGGACCGGAGCCG
* * * * * * * *
27899470 ATCCCCAGCTTGCGCATTCTGCCTTTCCGACTGGCTAATCGCTCGCATGCTTGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
27899535 GCTTAGGCATACGGAGTTCATTCC
66 ACTTAGGCATACGGAGTTCATTCC
27899559 ATTTCTAAGG
Statistics
Matches: 329, Mismatches: 65, Indels: 23
0.79 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 91 0.28
158 113 0.34
159 120 0.36
160 4 0.01
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAACAGACTGGACTGAGGGTTGTGGCAGCAGGA
TCGACAGCACGCAAGGGGGACCGGAGCCG
Found at i:27899591 original size:26 final size:26
Alignment explanation
Indices: 27899543--27899593 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27899533 TGGCTTAGGC
*
27899543 ATACGGAGTTCATTCCATTTCTAAGG
1 ATACGGAGTTCATTCCATGTCTAAGG
27899569 ATACGGAGTTCATTCCCA-GTCTAAG
1 ATACGGAGTTCATT-CCATGTCTAAG
27899594 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGG
Found at i:27900783 original size:157 final size:157
Alignment explanation
Indices: 27900339--27900839 Score: 499
Period size: 157 Copynumber: 3.2 Consensus size: 157
27900329 CCCAGTCTAA
* *
27900339 GCATATGGAGTTCATTCC-CAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGTAGCAGGATC-A
1 GCATACGGAGTTCATTCCAC-GTCTAAGAT-GGATC-GGACCGAGGGTTGTGGTAGCAGGATCGA
* * * * * *
27900401 GTAGCACGTAGGGGGGACCGGGTCGATCAC-CGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
63 -CAGCACGCAAGGGGGACCGGGCCGATC-CTCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAG
* * *
27900465 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 TGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
** * * **** * *
27900497 GTGTAGGGAGTTCATTCCACTTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGACA
1 GCATACGGAGTTCATTCCACGTCTAAGATGGA-TCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * * *
27900562 GTACGCAGAGGGGGACCGGGCTGATCCTCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAGTGC
65 GCACGCA-AGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGC
* *
27900627 CTGCAAGCTCGTTTCGTGGGTTGACTTAG
129 CCGCAAGCTCGTTTCGTGGGTTGGCTTAG
* * * *
27900656 GCATACGGAGTTCATTCC-CAGTCTAAGATGGATCAGACCGAAGGTTATGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAC-GTCTAAGATGGATCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * *
27900720 GCACGCATGGAGGACCAGGCCGATCCTCGATTTACGCATTCTGCCTCTCCGGTTGGCTGAGTGCC
65 GCACGCAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGCC
* * **
27900785 CGGATGCTCGTTTCGTGCATTGGCTTAG
130 CGCAAGCTCGTTTCGTGGGTTGGCTTAG
* *
27900813 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCACGTCTAAG
27900840 CATACAGAGT
Statistics
Matches: 274, Mismatches: 61, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 95 0.35
158 84 0.31
159 95 0.35
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCACGTCTAAGATGGATCGGACCGAGGGTTGTGGTAGCAGGATCGACAG
CACGCAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGCCC
GCAAGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27900842 original size:26 final size:26
Alignment explanation
Indices: 27900813--27900865 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27900803 ATTGGCTTAG
27900813 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
27900839 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27900865 G
1 G
27900866 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27901193 original size:26 final size:26
Alignment explanation
Indices: 27901164--27901216 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27901154 GTAGACTTAG
27901164 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
27901190 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
27901216 G
1 G
27901217 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27901478 original size:158 final size:158
Alignment explanation
Indices: 27901190--27901732 Score: 561
Period size: 158 Copynumber: 3.4 Consensus size: 158
27901180 CCCAATCTAA
* ** * * * * * * * *
27901190 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTACGACAGCAGGATCAACA
1 GCATACGGAGTTCATT-CCTGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCAGGACCGACA
* *
27901255 GCACGCAG-GGGGGACCAGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGGCCGGCTGAGCGC
65 GCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
27901319 CCACAGGCTTGTTTCGTGGGTTGGCTTAG
130 CCACAGGCTCGTTTCGTGGGTTGACTTAG
* * * **
27901348 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTTTGGCAATAGGACCG-CA
1 GCATACGGAGTTCATTCC-TGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCAGGACCGACA
* ** * * * * * *
27901412 GCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCGTATTATGCCACTCCGGCTGGCTCAGCGC
65 GCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
27901477 CCGCAGGCTCGTTTCGTGGGTTTACTTAG
130 CCACAGGCTCGTTTCGTGGGTTGACTTAG
** * * *** * * *
27901506 GCATACGGAGTTCATTCCTAGTCTAAG-ATCGGACCGAACCGAGGGTTCCAGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCT-GTCTAAGCCCCAG-CCGGACCGAGGGTTATGGCAGCAGGACCGAC
* * * * * *
27901570 AGCACGCAGAGGGGGATCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGACTGACCG
64 AGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
27901635 CCCACACGCTCGTTTCGTGGGTTGCCTTAG
129 CCCACAGGCTCGTTTCGTGGGTTGACTTAG
* *
27901665 GCATACAGAGTTCATTCCCTGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGCAGGACCGACA
1 GCATACGGAGTTCATT-CCTGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCAGGACCGACA
27901730 GCA
65 GCA
27901733 GGATCGACAG
Statistics
Matches: 302, Mismatches: 76, Indels: 13
0.77 0.19 0.03
Matches are distributed among these distances:
157 15 0.05
158 157 0.52
159 125 0.41
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCAGGACCGACAG
CACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CACAGGCTCGTTTCGTGGGTTGACTTAG
Found at i:27902378 original size:26 final size:26
Alignment explanation
Indices: 27902348--27902400 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27902338 GTTGGCTTAG
27902348 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27902374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27902400 G
1 G
27902401 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27902996 original size:26 final size:26
Alignment explanation
Indices: 27902966--27903017 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27902956 TGGCTTAGGC
27902966 ATACGAAGTTCATT-CCATGTCTAAGA
1 ATACGAAGTTCATTCCCA-GTCTAAGA
27902992 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
27903018 TCAGACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:27903650 original size:159 final size:160
Alignment explanation
Indices: 27903466--27903851 Score: 426
Period size: 158 Copynumber: 2.4 Consensus size: 160
27903456 CAGCTGGCTG
* * * *
27903466 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
** * **
27903531 A-ACTGGACCGAGGGTTACGG-TAGCGGGA-CTGACAGCACGGAGAGG-GGGATCGGGCTAATCC
66 AGACTGGACCGAGGGTTACGGCT-GCAAGATC-GACAGCACGCAG-GGTCAGATCGGGCTAATCC
* * ** *
27903592 TTGGCTTGTGCATTATGCCTCTTCGGTCGGCTC
128 CTGGCTTGCGCATTATGCCTCCCCGGTCAGCTC
* * * * * * * *
27903625 AGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTC-AA-AAT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* *
27903687 CAGACTGGACCGAGGGTTGCGGCTGCAAGATCGACAGCACGCAGGGTCAGATCGGGCTGATCCCT
65 CAGACTGGACCGAGGGTTACGGCTGCAAGATCGACAGCACGCAGGGTCAGATCGGGCTAATCCCT
* *
27903752 GGCTTGCGCATTCTGCCTCCCCGGTCAGCTG
130 GGCTTGCGCATTATGCCTCCCCGGTCAGCTC
* *
27903783 AGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCACA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC-
27903848 CAGA
65 CAGA
27903852 GTTCATTCCC
Statistics
Matches: 182, Mismatches: 36, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
157 7 0.04
158 119 0.65
159 48 0.26
160 4 0.02
161 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGACTGGACCGAGGGTTACGGCTGCAAGATCGACAGCACGCAGGGTCAGATCGGGCTAATCCCTG
GCTTGCGCATTATGCCTCCCCGGTCAGCTC
Found at i:27904573 original size:26 final size:26
Alignment explanation
Indices: 27904542--27904594 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27904532 GTTGACTTAG
27904542 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCACTC-CCAGTCTAA
*
27904568 GCATACAGAGTTTACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
27904594 G
1 G
27904595 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:27904762 original size:26 final size:26
Alignment explanation
Indices: 27904726--27904778 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27904716 GTTGACTTAG
* *
27904726 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
*
27904752 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
27904778 G
1 G
27904779 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:27904864 original size:184 final size:184
Alignment explanation
Indices: 27904493--27904937 Score: 502
Period size: 184 Copynumber: 2.4 Consensus size: 184
27904483 CGCATCCCGT
* * * * *
27904493 CTCTCTGGTCGGCTGAGCGCCCATACACTCGTTTCGTGCGTTGACTTAGGCATACAGAGTTCATC
1 CTCTCTGGTCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
* ** * *
27904558 TCCAGTCTAAGCATACAGAGTTTACTCCCAGTCTAAGATTAGACCGGATCGAGGGTTACGACAGC
66 CCCAGTCTAAGCATACAGAGTGCACTCCCAGTCTAAGATTAGACCGGACCAAGGGTTACGACAGC
* * * *
27904623 AGGATCGGCAGCACGTAAAGGGGACCCAACTGATCTTCGACTTGCGCATCTTGC
131 AAGATCGGCAGCACGTAAAGGGGACCCAACCGATCTCCGACTTACGCATCTTGC
* *
27904677 CTCTCTGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
1 CTCTCTGGTCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
* * * * *
27904742 CCCAGTTTAAGCATACGGAGTGCATTCCCAGTCTAAGATCT-GACCGGACCAAGGTTTGCGACAG
66 CCCAGTCTAAGCATACAGAGTGCACTCCCAGTCTAAGAT-TAGACCGGACCAAGGGTTACGACAG
** * * *
27904806 CAAGATCGGCAGCACGTAGGGGGGACCGAGCCGATCTCCGGCTTACGCAT-TCTGC
130 CAAGATCGGCAGCACGTAAAGGGGACCCAACCGATCTCCGACTTACGCATCT-TGC
**** * * * * *
27904861 CTCTCCAACCGGCTGA-TCACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CTCTCTGGTCGGCTGAGT-GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
27904925 -TCCATGTCTAAGC
65 CCCCA-GTCTAAGC
27904938 CCCAGCCAGA
Statistics
Matches: 218, Mismatches: 39, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
183 5 0.02
184 212 0.97
185 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (184 bp):
CTCTCTGGTCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
CCCAGTCTAAGCATACAGAGTGCACTCCCAGTCTAAGATTAGACCGGACCAAGGGTTACGACAGC
AAGATCGGCAGCACGTAAAGGGGACCCAACCGATCTCCGACTTACGCATCTTGC
Found at i:27905060 original size:159 final size:160
Alignment explanation
Indices: 27904892--27905256 Score: 452
Period size: 159 Copynumber: 2.3 Consensus size: 160
27904882 CGTACGCCCG
* * * * *
27904892 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAAGGGT
* * * * *
27904956 TGTGGCAATGGGATAGGCAGCACGCAGAGGG-GGACCGGGTCGAT-CCTCGGCTTGTGCATTATG
66 TGCGGCAATAGGATAGACAGCACGCAG-GGGTGGACCGAGTCGATCCCT-GGCTTGTGCATTATA
* *
27905019 CCTCTCCGATCGGCTCAGTGCCCACACACTCA
129 CCTCTCCGACCGGCTAAGTGCCCACACACTCA
* * *
27905051 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAAATCAAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAAACCAAGGG
* * * * * *
27905114 TTGCGGTAGTAGGATCGATAGCATGCAGGGGTGGACCGAGTCGATCCCTGGCTTGTGCATTCTAC
65 TTGCGGCAATAGGATAGACAGCACGCAGGGGTGGACCGAGTCGATCCCTGGCTTGTGCATTATAC
* *
27905179 CTCTCCGACCGGCTAAGTGCCCGCACGCTCA
130 CTCTCCGACCGGCTAAGTGCCCACACACTCA
*
27905210 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
27905257 TACGGAGTTC
Statistics
Matches: 175, Mismatches: 25, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
158 7 0.04
159 163 0.93
160 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (160 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAAGGGT
TGCGGCAATAGGATAGACAGCACGCAGGGGTGGACCGAGTCGATCCCTGGCTTGTGCATTATACC
TCTCCGACCGGCTAAGTGCCCACACACTCA
Found at i:27905264 original size:26 final size:26
Alignment explanation
Indices: 27905228--27905280 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27905218 GTTGGCTTAG
27905228 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
27905254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27905280 G
1 G
27905281 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27905977 original size:26 final size:26
Alignment explanation
Indices: 27905947--27905999 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27905937 GTTGACTTAG
*
27905947 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27905973 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27905999 G
1 G
27906000 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27906160 original size:26 final size:26
Alignment explanation
Indices: 27906131--27906183 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27906121 GTTAGCTTAG
27906131 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27906157 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27906183 G
1 G
27906184 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27906884 original size:26 final size:26
Alignment explanation
Indices: 27906855--27906907 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27906845 ATTGACTTAG
27906855 GCATAC-ATAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
27906881 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27906907 G
1 G
27906908 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27907399 original size:26 final size:26
Alignment explanation
Indices: 27907369--27907421 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27907359 GTTGAGTTAG
27907369 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27907395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27907421 G
1 G
27907422 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27907607 original size:21 final size:21
Alignment explanation
Indices: 27907583--27907623 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
27907573 CCTAAGCCCC
*
27907583 AGTTGAACCGAAGGTTGTGGT
1 AGTTGAACCGAAGGCTGTGGT
* *
27907604 AGTTGGACCGAGGGCTGTGG
1 AGTTGAACCGAAGGCTGTGG
27907624 CAGTAGGACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.12, G:0.44, T:0.24
Consensus pattern (21 bp):
AGTTGAACCGAAGGCTGTGGT
Found at i:27907632 original size:21 final size:21
Alignment explanation
Indices: 27907589--27907635 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
27907579 CCCCAGTTGA
* * *
27907589 ACCGAAGGTTGTGGTAGTTGG
1 ACCGAAGGCTGTGGCAGTAGG
*
27907610 ACCGAGGGCTGTGGCAGTAGG
1 ACCGAAGGCTGTGGCAGTAGG
27907631 ACCGA
1 ACCGA
27907636 CAGCAAGCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
ACCGAAGGCTGTGGCAGTAGG
Found at i:27908644 original size:26 final size:26
Alignment explanation
Indices: 27908614--27908666 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27908604 GTTGACTTAG
27908614 GCATAC-AGAGTTCATCCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
* *
27908640 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27908666 G
1 G
27908667 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27908948 original size:159 final size:159
Alignment explanation
Indices: 27908676--27909019 Score: 366
Period size: 159 Copynumber: 2.2 Consensus size: 159
27908666 GATCGGATCG
* * * * * * **
27908676 GACCGAGGGTTACGGTAGCAGGATCGGTAGCACGCA-AGGGGGACCCGACCGATCCCCGACTTGC
1 GACCGAGGGTTATGGCAGCAGGACCGGTAGCACACACAGGGGGATCGGGTCGATCCCCGACTTGC
* * * * * * * * * * *
27908740 GCGTTCTGCCTCCCCGATTGGCTGAGCGCCTGCACGCCCATTTCGTGGGTTGGCTTGGGCATAAG
66 GCATTATGCCTCACCGATCGGCTCAGCGCCCGCACACCCATTTCATGGGTTGACTTAGACATAAG
* *
27908805 GAGTTAATTCCATGTCTAAACCCCAGCCG
131 AAGTTAATTCCATGTCTAAACCCCAGCCA
* ** * *
27908834 GACCGAGGGTTGTGGCAGTGGGACCGGTAGCACACACAGGGGGATCGGGTCGATCCCCTACTTGT
1 GACCGAGGGTTATGGCAGCAGGACCGGTAGCACACACAGGGGGATCGGGTCGATCCCCGACTTGC
* * * *
27908899 GCATTATGCCTCACCGATCGGCTCAGCGCCCGCGCACTCGTTTCATGGGTTGACTTAGACATACG
66 GCATTATGCCTCACCGATCGGCTCAGCGCCCGCACACCCATTTCATGGGTTGACTTAGACATAAG
* ** * *
27908964 AAGTTCATTCCATGTCTAAGGCCTAGTCA
131 AAGTTAATTCCATGTCTAAACCCCAGCCA
27908993 GACCGAGGGTTATGGCAGCAGGACCGG
1 GACCGAGGGTTATGGCAGCAGGACCGG
27909020 CAGCGGGATC
Statistics
Matches: 147, Mismatches: 38, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
158 29 0.20
159 118 0.80
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (159 bp):
GACCGAGGGTTATGGCAGCAGGACCGGTAGCACACACAGGGGGATCGGGTCGATCCCCGACTTGC
GCATTATGCCTCACCGATCGGCTCAGCGCCCGCACACCCATTTCATGGGTTGACTTAGACATAAG
AAGTTAATTCCATGTCTAAACCCCAGCCA
Found at i:27909157 original size:26 final size:26
Alignment explanation
Indices: 27909128--27909180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27909118 GTTGACTTAG
*
27909128 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
27909154 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27909180 G
1 G
27909181 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27909608 original size:158 final size:158
Alignment explanation
Indices: 27909162--27909647 Score: 460
Period size: 159 Copynumber: 3.1 Consensus size: 158
27909152 AAGCATATGA
* ** * * * *
27909162 AGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTACGGTAGTAGGATCGATAGCACGCTG
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* * * * * *
27909227 GAAGGGCCCGGGCCGATCCCCGGCTAGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGC
66 G-AGGGACAGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGC
* ** * *
27909292 CCATTTCACGGATTGGCTTAGGCATAGGG
130 TCATTTCGTGGGTTGGCTTAGGCATACGG
** * * * *
27909321 AGTTCATT-CCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGACAGCAGGACCGACAGCACGC
1 AGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * ** *
27909384 AGTGAGGGATCA-GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTT-AATGCCCAC
64 AG-GAGGGA-CAGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGG-TTGAGCGCCCGC
* ** *
27909447 ACGCTCATTCCGTGGGTTCACTT-TGCATACGG
126 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
** *
27909479 AGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTGTGGCAGCAGGATTGACAGCACGCAA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC-A
* * * * *
27909544 GGGGGGACAGGGTCGATCCCTGGCTTGTGAAATCTGCCTCTCCGACCGGTTGAGCGCCCGCACGC
65 GGAGGGACAGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGC
* * *
27909609 TCGTTTTGTGGGTTGGCTTAGGGATACGG
130 TCATTTCGTGGGTTGGCTTAGGCATACGG
27909638 AGTTCATTCC
1 AGTTCATTCC
27909648 ATGTCTACGC
Statistics
Matches: 253, Mismatches: 63, Indels: 22
0.75 0.19 0.07
Matches are distributed among these distances:
157 8 0.03
158 115 0.45
159 123 0.49
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
GAGGGACAGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGG
Found at i:27910667 original size:159 final size:158
Alignment explanation
Indices: 27910441--27910773 Score: 386
Period size: 159 Copynumber: 2.1 Consensus size: 158
27910431 CAGGATCGGT
* * * *
27910441 AGCACGTAG-GGGGGACGGGTCGATTCCCGGCTTGCGCATTCTGCCTGTCTGGCCGGCTGAGCCC
1 AGCACGTAGAGGGGGACGGGTCGATCCCCGGCTTGCGCATTATGCCTGTCTAGCCGGCTCAGCCC
* ** * * * *
27910505 CCGCGCGCCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAGTC
66 CCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCGA-ATCTAAGACCCAATC
* * **
27910569 GGACTGGGGGTTGTGGCAGCGGGACCGAC
130 GGACTGAGGGTTGCGGCAGCAAGACCGAC
27910598 AGCACGTAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTATG-C-GTCTTCAGCCGGCTCAG
1 AGCACGTAGAGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTATGCCTGTC-T-AGCCGGCTCAG
** ** ***
27910661 TGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCGAATCTAAGATTGAA
63 CCCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCGAATCTAAGACCCAA
*
27910726 TCGGACTGAGGGTTGCGGCAGCAAGATCGAC
128 TCGGACTGAGGGTTGCGGCAGCAAGACCGAC
*
27910757 AGCACGCAGAGGGGGAC
1 AGCACGTAGAGGGGGAC
27910774 CGGGCCAATC
Statistics
Matches: 147, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
157 12 0.08
158 9 0.06
159 125 0.85
160 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.22
Consensus pattern (158 bp):
AGCACGTAGAGGGGGACGGGTCGATCCCCGGCTTGCGCATTATGCCTGTCTAGCCGGCTCAGCCC
CCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCGAATCTAAGACCCAATCG
GACTGAGGGTTGCGGCAGCAAGACCGAC
Found at i:27910785 original size:159 final size:158
Alignment explanation
Indices: 27910504--27910877 Score: 383
Period size: 159 Copynumber: 2.4 Consensus size: 158
27910494 CGGCTGAGCC
* * * * * * *
27910504 CCCGCGCGCCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCCAATC
* * ** * * * * * *
27910569 GGACTGGGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACTGGGTCGATCCCCGGCTTG
66 GGACTGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAGGGGGACCGGGCCAAT-CCCAGCTTA
*
27910634 CGCATTATGCGTCTTC-AGCCGGCTCAGTG
130 CGCATTATACGTCTTCGA-CCGGCTCAGTG
* * ***
27910663 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCGA-ATCTAAGATTGAAT
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATATCTAAGACCCAAT
* *
27910727 CGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCGGGCCAATCCCAGTTTA
65 CGGACTGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCAGCTTA
* * * * *
27910792 CGCATTCTATGTTTTCGATCGGCTGAGTG
130 CGCATTATACGTCTTCGACCGGCTCAGTG
* * * * * *
27910821 CCCGCACGCTCATTTAATGGGTTGGCTTAGTCATACGGAGTTTATGCCATGTCTAAG
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
27910878 CATACGGAGT
Statistics
Matches: 174, Mismatches: 38, Indels: 7
0.79 0.17 0.03
Matches are distributed among these distances:
157 1 0.01
158 74 0.43
159 98 0.56
160 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCCAATC
GGACTGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCAGCTTAC
GCATTATACGTCTTCGACCGGCTCAGTG
Found at i:27910900 original size:26 final size:26
Alignment explanation
Indices: 27910852--27910903 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27910842 TTGGCTTAGT
* *
27910852 CATACGGAGTTTATGCCATGTCTAAG
1 CATACGGAGTTCATCCCATGTCTAAG
27910878 CATACGGAGTTCATTCCCA-GTCTAAG
1 CATACGGAGTTCA-TCCCATGTCTAAG
27910904 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCATGTCTAAG
Found at i:27911090 original size:26 final size:26
Alignment explanation
Indices: 27911061--27911113 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27911051 GTTGACTTAG
*
27911061 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
* *
27911087 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
27911113 G
1 G
27911114 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:27911394 original size:159 final size:157
Alignment explanation
Indices: 27911126--27911594 Score: 492
Period size: 159 Copynumber: 3.0 Consensus size: 157
27911116 CGGATCGGAT
* * * * * * *
27911126 CAGACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGAGGGGACCGAGTCGATCCCTGGCTTG
1 CAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGA-CGGGTCGATCCCTGGCTTG
* ** * * *
27911191 CGCATTCTGCCTCTCCAGCCAACTGAGA-GCTCGCACGCCTGTTTCGTGGGTTGGCATAGGCATA
65 CGCATTATGCCTCTCCAGCCGGCTGA-ACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
*
27911255 GGGAGTTCATTCCATGTCTAAGCCCCTGC
129 GGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
27911284 CAGACCAAGGGTTGTGGCAGCTGGACCGGCAGCATGCAGAAGGGGATCGGGTCGATCCCTGGCTT
1 CAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAG-AGGGGA-CGGGTCGATCCCTGGCTT
* * * * *
27911349 GTGCATTATGCCTCTCCGGTCGGCTGAACGCCCGCACACCCGTTTCGTGGGTTAGCTTAGGCATA
64 GCGCATTATGCCTCTCCAGCCGGCTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* ** *
27911414 GGGAGTTAATTCTGTGTCTAAGCTCCAGC
129 GGGAGTTCATTCCATGTCTAAGCCCCAGC
** * * **
27911443 TGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGAGGGACTGGGTCGATCCCCAGCTT
1 CAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAG-GGGAC-GGGTCGATCCCTGGCTT
* * * * * *
27911508 GCGCATTATGCCTCTCTAGCCGGCTCAACGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
64 GCGCATTATGCCTCTCCAGCCGGCTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* * *
27911573 CGAAGCTCATTCCCA-GTCTAAG
129 GGGAGTTCATT-CCATGTCTAAG
27911595 ATCGGACCGG
Statistics
Matches: 254, Mismatches: 52, Indels: 9
0.81 0.17 0.03
Matches are distributed among these distances:
158 35 0.14
159 218 0.86
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
CAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGACGGGTCGATCCCTGGCTTGC
GCATTATGCCTCTCCAGCCGGCTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:27912616 original size:159 final size:155
Alignment explanation
Indices: 27912153--27912635 Score: 395
Period size: 158 Copynumber: 3.1 Consensus size: 155
27912143 GTTCATTTCG
** * **
27912153 AGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAGGATTGGTAGCAC-ACAGGGGGGACCGG
1 AGTCTAAGATCAAACCGGACCGAGGGTTACG-CAGCAGGATCGACAGCACGA-AGGGGGGACCGG
* * *
27912217 GCC-AGTCCCCAGCTTGCGCATTCTGCCTCTCCAGAT-GGTTGAGCGACCGCACACCCATTTCAT
64 GCCGA-T-CCCAGCTTGCGCATTCTGCCTCTCC-GATCGGCTGAGCG-CCGCACACTCGTTTCAT
** *
27912280 TTGTTGGCTTAGGCATAGGGAGTTCATTCCAT
125 GGGTTGGCTTAGGCATACGGAGTTCA-TCCAT
** * ** ** * * * *
27912312 -GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAG-TGGA-CGAACAGCATGCAGAGGGGGATCG
1 AGTCTAAGATCAAACCGGACCGAGGGTT-ACGCAGCAGGATCG-ACAGCACGAAG-GGGGGACCG
* * * * * * * * *
27912374 GGCTGATCCCCGACTTGCACATTATTCCTCTTCGATCGGCTCAGCACCCGCACGCTCGTTTCATG
63 GGCCGATCCCAG-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGC-GCCGCACACTCGTTTCATG
* ** * * *
27912439 GATTGATTTATGCCTACGGAGTTCATCCTT
126 GGTTGGCTTAGGCATACGGAGTTCATCCAT
* *
27912469 AGTCTAAGATCAAACCGGATCGAGGGTTACAGCAGCAGGATCGACAGCACGTAAGGGGGGACCAG
1 AGTCTAAGATCAAACCGGACCGAGGGTTAC-GCAGCAGGATCGACAGCACG-AAGGGGGGACCGG
* *
27912534 GCCGATCTCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACACTCGTTTCGTGG
64 GCCGATC-CCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC-GCACACTCGTTTCATGG
27912599 GTTGGCTTAGGCATACGGAGTTCATTCCAT
127 GTTGGCTTAGGCATACGGAGTTCA-TCCAT
27912629 -GTCTAAG
1 AGTCTAAG
27912636 CATACGGAGT
Statistics
Matches: 242, Mismatches: 66, Indels: 32
0.71 0.19 0.09
Matches are distributed among these distances:
156 1 0.00
157 20 0.08
158 117 0.48
159 93 0.38
160 11 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
AGTCTAAGATCAAACCGGACCGAGGGTTACGCAGCAGGATCGACAGCACGAAGGGGGGACCGGGC
CGATCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCGCACACTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATCCAT
Found at i:27912645 original size:26 final size:26
Alignment explanation
Indices: 27912609--27912661 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27912599 GTTGGCTTAG
27912609 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27912635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27912661 G
1 G
27912662 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27913363 original size:26 final size:26
Alignment explanation
Indices: 27913327--27913378 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27913317 TTGACTTAGT
27913327 CATATAGAGTTCATCCCCAGTCTAAG
1 CATATAGAGTTCATCCCCAGTCTAAG
* **
27913353 CATATGGAGTTCATTGCCAGTCTAAG
1 CATATAGAGTTCATCCCCAGTCTAAG
27913379 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CATATAGAGTTCATCCCCAGTCTAAG
Found at i:27914294 original size:13 final size:13
Alignment explanation
Indices: 27914276--27914301 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27914266 TGCGTATTAT
27914276 GCCTCTCCGATCG
1 GCCTCTCCGATCG
27914289 GCCTCTCCGATCG
1 GCCTCTCCGATCG
27914302 ACTGAGTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.23, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:27920092 original size:26 final size:26
Alignment explanation
Indices: 27920056--27920109 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
27920046 GTTGGCTTAG
27920056 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27920082 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27920108 GC
1 GC
27920110 TTAGATCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27920968 original size:26 final size:26
Alignment explanation
Indices: 27920939--27920991 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27920929 GTTGGCTTAG
27920939 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
27920965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27920991 G
1 G
27920992 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27921540 original size:26 final size:26
Alignment explanation
Indices: 27921504--27921554 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27921494 TGACTTAGGC
*
27921504 ATACGGAGTTCATCCCCAATCTAAGT
1 ATACGAAGTTCATCCCCAATCTAAGT
* *
27921530 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAATCTAAG
27921555 ATCGAATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGT
Found at i:27921829 original size:159 final size:158
Alignment explanation
Indices: 27921530--27921871 Score: 409
Period size: 159 Copynumber: 2.2 Consensus size: 158
27921520 CAATCTAAGT
* * * * *
27921530 ATACGAAGTTCATTCCCA-GTCTAAGATCGAATCAGACCGAGGGTTGCGGTAGCAGGATCGGTAG
1 ATACGAAGTTCATT-CCATGTCTAAGACCCAATCAGACCGAGGGTTGCGGCAGCAGGACCGGCAG
* * * * * * *
27921594 CACGCAAGGGGGATCGGGACGATCCTCAGCTTGCGCATTCTGCCTCTCCAGTCAGCTGAGCGCCC
65 CACGCAAGGGGGACCGGGACGATCCCCAGCTTACGCATTCTACCTCTCCAGACAGATGAGCGACC
*
27921659 GCACGCCCGTTTCGTGGGTTGGCTTAGGG
130 GCACGCCCGTTTCGTGGGTTGGCTTAGGC
* * * * * *
27921688 GTACGGAGTTCATTCCATGTCTAAGACCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGC
1 ATACGAAGTTCATTCCATGTCTAAGACCCAATCAGACCGAGGGTTGCGGCAGCAGGACCGGCAGC
* * * * *
27921753 ATGCAGAGGGGGACCGGGTCGATCCCCGGCTTATGCATTCTACCTCTCC-GACCGAATGAGCGAC
66 ACGCA-AGGGGGACCGGGACGATCCCCAGCTTACGCATTCTACCTCTCCAGACAG-ATGAGCGAC
* *
27921817 CGCACGCTCGTTTCGTGGTTTGGCTTAGGC
129 CGCACGCCCGTTTCGTGGGTTGGCTTAGGC
27921847 ATACGAAGTTCATTCCATGTCTAAG
1 ATACGAAGTTCATTCCATGTCTAAG
27921872 CATACAAAGT
Statistics
Matches: 153, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
157 3 0.02
158 57 0.37
159 93 0.61
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
ATACGAAGTTCATTCCATGTCTAAGACCCAATCAGACCGAGGGTTGCGGCAGCAGGACCGGCAGC
ACGCAAGGGGGACCGGGACGATCCCCAGCTTACGCATTCTACCTCTCCAGACAGATGAGCGACCG
CACGCCCGTTTCGTGGGTTGGCTTAGGC
Found at i:27921881 original size:26 final size:26
Alignment explanation
Indices: 27921845--27921897 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27921835 TTTGGCTTAG
*
27921845 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
27921871 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
27921897 G
1 G
27921898 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:27922824 original size:159 final size:157
Alignment explanation
Indices: 27922408--27922922 Score: 462
Period size: 159 Copynumber: 3.2 Consensus size: 157
27922398 ACTCACTTCA
* * *
27922408 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTAGACTGAGGGTTGCAG
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAAATCAGACGA-ACTGAGGGTTGCGG
* * *
27922472 TAGTAGGATCGACAGCACA-CAGGAGGGACCGGG-CTGATCCCCGGCTTGCGCATTCTACCTCTT
64 TAGTAGGATCGACAGCA-AGCAGGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * *
27922535 CGGTCGGTTGAGCACCCGTACGCCCGTTTCA
127 CGGCCGGCTCAGCACCCGTACGCTCGTTTCG
* * * *** * * * *
27922566 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGGCTAAGCCCCAGTCGGACTGAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA-AATCAGACGAACTGAGGGTTGCGGT
** * * * * ** * * * * *
27922631 AGCGGGACCGACAACAAGTAGAAGGGGATTGGGTCGATCCTCAGCTTGCGTATTATGGCTCTCCG
65 AGTAGGATCGACAGCAAGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* *
27922696 GCCGGCTCAGAACCCGCACGCTCGTTTCG
129 GCCGGCTCAGCACCCGTACGCTCGTTTCG
* *
27922725 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAAATCGGACCGAACCGAGGGTTGCGG
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAAATCAGA-CGAACTGAGGGTTGCGG
* * ** *
27922789 TAGTAGGATCGACAGCATGCAGGGGCGGACCGGGTCGGTCCCCGGCTTTTGCATTCTGCCTCTCT
64 TAGTAGGATCGACAGCAAGCAGGGG-GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
** * * *
27922854 AACCGGCTCAGCGCCCGTACGTTCATTTCG
128 GGCCGGCTCAGCACCCGTACGCTCGTTTCG
* * *
27922884 TTGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
27922923 GCATATGGAG
Statistics
Matches: 273, Mismatches: 75, Indels: 17
0.75 0.21 0.05
Matches are distributed among these distances:
157 4 0.01
158 65 0.24
159 200 0.73
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAAATCAGACGAACTGAGGGTTGCGGTA
GTAGGATCGACAGCAAGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
CGGCTCAGCACCCGTACGCTCGTTTCG
Found at i:27922927 original size:26 final size:26
Alignment explanation
Indices: 27922897--27922949 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27922887 GTTGGCTTAG
*
27922897 GCATACGTAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
27922923 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
27922949 G
1 G
27922950 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:27923307 original size:26 final size:26
Alignment explanation
Indices: 27923277--27923329 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27923267 GTTGGCTTAG
*
27923277 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
27923303 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27923329 G
1 G
27923330 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27923619 original size:159 final size:158
Alignment explanation
Indices: 27923441--27923806 Score: 398
Period size: 158 Copynumber: 2.3 Consensus size: 158
27923431 ACCACACACC
* * * * * **
27923441 CGTTTCGTGGGTTTGCTTAGGCGTAGGGACTTCATTCCATGTCTAAGCCCCAG-CTGGATTGAAG
1 CGTTTCGTGGG-TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAAG
* ** * * * *
27923505 GTTGTAGCAGCGGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCCTGGCTTGGGCATTAC-
65 GTTGCAGCAGCCAGATCGACAGCACACAG-GGGGGACCGAGCCGAACCCCGGCCTGCGCATT-CT
* * * *
27923569 GCCTTTTCGGTCGGCTCAGCGCCCGAACGCT
128 ACCTCTCCGGTCGACTCAGCGCCCGAACGCT
*** *
27923600 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGAG
1 CGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAA
* *
27923663 GGTTGCGGCAGCCAGATCGACAGCACACAGGGGGGACCGAGCCGAACCCCGGCCTGCTCATTCTA
64 GGTTGCAGCAGCCAGATCGACAGCACACAGGGGGGACCGAGCCGAACCCCGGCCTGCGCATTCTA
* *
27923728 CCTCTCCGGTCGACTGAGCGCCCGTACGCT
129 CCTCTCCGGTCGACTCAGCGCCCGAACGCT
* *
27923758 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
27923807 TACGGAGTTC
Statistics
Matches: 172, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 95 0.55
159 70 0.41
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAAGG
TTGCAGCAGCCAGATCGACAGCACACAGGGGGGACCGAGCCGAACCCCGGCCTGCGCATTCTACC
TCTCCGGTCGACTCAGCGCCCGAACGCT
Found at i:27923777 original size:158 final size:159
Alignment explanation
Indices: 27923518--27923804 Score: 409
Period size: 158 Copynumber: 1.8 Consensus size: 159
27923508 GTAGCAGCGG
* * * * * * * *
27923518 GATCGACAGCACACAGAGGGGGACCGAGCCGATCCCTGGCTTGGGCATTACGCCTTTTCGGTCGG
1 GATCGACAGCACACAGAGGGGGACCGAGCCGAACCCCGGCCTGCGCATTACACCTCTCCGGTCGA
*
27923583 CTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
66 CTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG
27923647 ATTGGACCGGACCGAGGGTTGCGGCAGCCA
130 ATTGGACCGGACCGAGGGTTGCGGCAGCCA
*
27923677 GATCGACAGCACACAG-GGGGGACCGAGCCGAACCCCGGCCTGCTCATT-CTACCTCTCCGGTCG
1 GATCGACAGCACACAGAGGGGGACCGAGCCGAACCCCGGCCTGCGCATTAC-ACCTCTCCGGTCG
* * * *
27923740 ACTGAGCGCCCGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 ACTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
27923805 CATACGGAGT
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
157 4 0.04
158 92 0.82
159 16 0.14
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GATCGACAGCACACAGAGGGGGACCGAGCCGAACCCCGGCCTGCGCATTACACCTCTCCGGTCGA
CTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGA
TTGGACCGGACCGAGGGTTGCGGCAGCCA
Found at i:27923828 original size:26 final size:26
Alignment explanation
Indices: 27923778--27923830 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27923768 GTTGGCTTAG
*
27923778 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
27923804 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
27923830 G
1 G
27923831 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:27924024 original size:26 final size:26
Alignment explanation
Indices: 27923974--27924026 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27923964 CTTGGCTTAG
*
27923974 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
27924000 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
27924026 G
1 G
27924027 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:27924126 original size:196 final size:196
Alignment explanation
Indices: 27923721--27924126 Score: 528
Period size: 196 Copynumber: 2.1 Consensus size: 196
27923711 CCGGCCTGCT
** * * * *
27923721 CATTCTACCTCTCCGGTCGACTGAGCGCCCGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGG
1 CATTCTACCTCTCCAATCGACTGAGCGCCCGCACGCTCGTTTCATGGCTTGGCTTAGGCATACAG
*
27923786 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGGGTT
66 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTT
* * * * *
27923851 GCGGCAGCAAGACCAGCAGTAGGATCGACAGCATGCAGAAGGGACCAGGTCGATCCCCGGCTTGC
131 ACAGCAGCAAGACCAGCAGCAGGATCGACAGCATGCAGAAGGGACCAGGTCGATCCCCGACTTAC
27923916 G
196 G
* * * *
27923917 AATTCTACCTCTCCAATCGGCTGAGTGCCCGCACGCTCGTTTCGTGGCTTGGCTTAGGCATACAG
1 CATTCTACCTCTCCAATCGACTGAGCGCCCGCACGCTCGTTTCATGGCTTGGCTTAGGCATACAG
*
27923982 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAA-GGT
66 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGA-CCAAGGGT
* * ** * ** * * *
27924046 TACAGTAGCAGGACCAGCAGCAGGATCGGTAGCATGTAGGTGGGA-CTGGGCTGATCCCTGACTT
130 TACAGCAGCAAGACCAGCAGCAGGATCGACAGCATGCAGAAGGGACCAGGTC-GATCCCCGACTT
27924110 ACG
194 ACG
*
27924113 CATTCTGCCTCTCC
1 CATTCTACCTCTCC
27924127 GGCCGACCTT
Statistics
Matches: 179, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
195 4 0.02
196 172 0.96
197 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (196 bp):
CATTCTACCTCTCCAATCGACTGAGCGCCCGCACGCTCGTTTCATGGCTTGGCTTAGGCATACAG
AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTT
ACAGCAGCAAGACCAGCAGCAGGATCGACAGCATGCAGAAGGGACCAGGTCGATCCCCGACTTAC
G
Found at i:27924548 original size:26 final size:26
Alignment explanation
Indices: 27924499--27924550 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27924489 GTTGGCTTTG
**
27924499 GCATACAGAGTTCATTCCGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27924525 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27924551 CAATTTGAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27925250 original size:26 final size:26
Alignment explanation
Indices: 27925220--27925272 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27925210 GTTGACTTAG
27925220 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** * *
27925246 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27925272 G
1 G
27925273 ATCGAACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27925699 original size:157 final size:157
Alignment explanation
Indices: 27925253--27925746 Score: 578
Period size: 159 Copynumber: 3.1 Consensus size: 157
27925243 TAAGCATATG
* ** *
27925253 GAGTTCATTCCTAGTCTAAGATCGAACCAAACCTAGGGTTGCGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * ** *
27925318 GGGGGTACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCT-CTGGCTGGCTGAGTGCCCGCATG
66 GGGGG-ATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCTATC-GGCTGAGTGCCCGCACG
* * **
27925382 CCCGTTTCATGGGTTGGCTTAGGCATAGG
129 CTCGTTTCGTGGGTTGGCTTAGGCATACA
* * ** * * * * * *
27925411 GAGTTCATTCCTTGTCTGAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATGGGCAGCACGTA
1 GAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * *
27925476 GAGGGGAAACAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACG
66 G-GGGG-ATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCTATCGGCTGAGTGCCCGCACG
* *
27925541 CTCATTTCGTGGGTTGACTTAGGCATACA
129 CTCGTTTCGTGGGTTGGCTTAGGCATACA
* * * *
27925570 GAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAACAGGATCTACAACACGCA
1 GAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * *
27925635 GGGGGATCAGGTCTGA-CCCCGGCTTGGGCATTCTGCCTCTCCTATCGGCTGAGTGCCCGAACGC
66 GGGGGATCAGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTCCTATCGGCTGAGTGCCCGCACGC
27925699 TCGTTTCGTGGGTTGGCTTAGGCATACA
130 TCGTTTCGTGGGTTGGCTTAGGCATACA
*
27925727 GAGTTCATTCCAAGTCTAAG
1 GAGTTCATTCCTAGTCTAAG
27925747 CATACGGAGT
Statistics
Matches: 278, Mismatches: 55, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
157 93 0.33
158 59 0.21
159 124 0.45
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCTATCGGCTGAGTGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACA
Found at i:27925756 original size:26 final size:26
Alignment explanation
Indices: 27925720--27925772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27925710 GTTGGCTTAG
27925720 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
27925746 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
27925772 G
1 G
27925773 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:27926505 original size:159 final size:158
Alignment explanation
Indices: 27926125--27926517 Score: 409
Period size: 158 Copynumber: 2.5 Consensus size: 158
27926115 CATAGTCTAA
* * * * ** * *
27926125 GCATACACAGTTCATTCCCAATCTAAGAT-CGAACCAAACCGAGGGTTGCGATAGCATGATCGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCCG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * *
27926189 AGCATGTAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTTTGCCTCTTCGGCTGGCTGAGCGC
65 AGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTACACATTATGCCTCTCCGGCCGGCTCAGCAC
* *
27926254 CTGCACACCCGTTTCATGGGTTGGCTTAG
130 CTGAACACCCGTTTCATGGGTTGACTTAG
* * * * *
27926283 GCATA-GGAGTTCATT-CCATGTCTAAG-CCCCAGCTAGACCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCCGA-CCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * *
27926345 CAGCACGCAGAGGGGGACCAAG-TCGATCCTCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAG
64 CAGCACGCAG-GGGGGACCAGGCT-GATCCCCGGCTTACACATTATGCCTCTCCGGCCGGCTCAG
* * * *
27926409 CATCTGAACGCTCGTTTCGTGGGTTGACTTAG
127 CACCTGAACACCCGTTTCATGGGTTGACTTAG
* *
27926441 GCATACAGAGTTCATTCCCAGTCTAAGATCCGACCGGACCGAGAGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
27926506 GCACGCAGGGGG
66 GCACGCAGGGGG
27926518 CATCGGGTCG
Statistics
Matches: 189, Mismatches: 38, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
156 4 0.02
157 46 0.24
158 81 0.43
159 52 0.28
160 6 0.03
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCTGATCCCCGGCTTACACATTATGCCTCTCCGGCCGGCTCAGCACC
TGAACACCCGTTTCATGGGTTGACTTAG
Found at i:27926583 original size:158 final size:159
Alignment explanation
Indices: 27926263--27926626 Score: 396
Period size: 158 Copynumber: 2.3 Consensus size: 159
27926253 CCTGCACACC
* * * *
27926263 CGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAG
* * *
27926327 TTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAAGTCGATCCTCGGCTTGCACATTATGC
66 TTGTGGCAGCAGGACCGACAGCACGCAGAGGGGCACCAAGTCGATCCTCAGCTTGCACATTATAC
* * * *
27926392 CTCTCCGGCCGGCTCAGCATCTGAACGCT
131 CTCTCCGACCGACTCAGCACCCGAACGCT
* ** *
27926421 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCC-GACCGGACCGAG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAG
* * ** ** *
27926484 AGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGCATCGGGTCGAT-CTCCAGCTTGTGCATTC
64 AGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGCACCAAGTCGATCCT-CAGCTTGCACATTA
* ** *
27926547 TACCTCTCCGACCGACTGAGTGCCCGCACGCT
128 TACCTCTCCGACCGACTCAGCACCCGAACGCT
* * * *
27926579 CGTTTCGTTGCTTGCCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27926627 ATACGAAGTT
Statistics
Matches: 169, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 5 0.03
158 107 0.63
159 54 0.32
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAG
TTGTGGCAGCAGGACCGACAGCACGCAGAGGGGCACCAAGTCGATCCTCAGCTTGCACATTATAC
CTCTCCGACCGACTCAGCACCCGAACGCT
Found at i:27928360 original size:157 final size:159
Alignment explanation
Indices: 27927922--27928360 Score: 419
Period size: 159 Copynumber: 2.8 Consensus size: 159
27927912 AGCATGATTG
* *
27927922 GCAGCACGCAGAGGTG-AT-CGGGCCGATCCCCGGCTTGCGCATTCTACCT-TTCTGGCTGGCTA
1 GCAGCACGCAAAGGGGAATCCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTC--GCTGGCTA
* * * * * *
27927984 AGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCC
64 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCA
* * ** *
27928049 TATCGAACCGAGGGTTGTGGCAGCGGGATTA
129 GATCGAACCAAGGGTTACGGCAGCGGGATGA
* * * * * **
27928080 GCAGCACGCAAAGGGGAATCC-GGCCGATCCCTGACTTGCGCATTATGCCTCTCCGACCAGCTCA
1 GCAGCACGCAAAGGGGAATCCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCG-CTGGCT-A
* * * * *
27928144 A-CGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATC
64 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATATCTAAGACC
*
27928207 AGATCGAACCAAGGGTTACGGTAGCGGGATCGA
128 AGATCGAACCAAGGGTTACGGCAGCGGGAT-GA
* * * * * * * *
27928240 -TAGCACG-TAGGGGGGA-CCGGGCCGGTCCCCGGCTTACGCATTCTACCTCTTCGTTGGCTGAG
1 GCAGCACGCAAAGGGGAATCCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGCTGGCTAAG
* * * *
27928302 CGCCCGCACACTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
27928361 CATACAGAGT
Statistics
Matches: 222, Mismatches: 49, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
156 4 0.02
157 52 0.23
158 48 0.22
159 109 0.49
160 9 0.04
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
GCAGCACGCAAAGGGGAATCCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGCTGGCTAAG
CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCAGA
TCGAACCAAGGGTTACGGCAGCGGGATGA
Found at i:27928370 original size:26 final size:26
Alignment explanation
Indices: 27928334--27928386 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27928324 GTTGGTTTAG
*
27928334 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
27928360 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27928386 G
1 G
27928387 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27928665 original size:26 final size:26
Alignment explanation
Indices: 27928629--27928681 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27928619 GTTGACTTAG
27928629 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
27928655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27928681 G
1 G
27928682 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27929129 original size:158 final size:156
Alignment explanation
Indices: 27928655--27929156 Score: 488
Period size: 159 Copynumber: 3.2 Consensus size: 156
27928645 CCCAGTCTAA
* * * * *
27928655 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAGATCGAGGGTTGCCGCAATAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTGCAGCAGTAGGATC-GA
* * * * * * *
27928720 TGCACGCAGGGGGATCGGGCCGATCCCCAACTTGCACATTCTACCTCTCCAGTCGACTGAGCGCC
64 TGCACGCAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCACC
* *
27928785 CGCACACCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** * *
27928813 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCA-ATCGGATCGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGCAGCAGTAGGATCGA
* * * * * * ** * *
27928876 CCGCACGTAGAGGGGGAACGGGTTGATCCCCGGCTTGCGCGTTATGCCTCTCTGGCCGGCTCAGC
64 -TGCACG--CAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGC
* * * *
27928941 ACCCGAACGCTCGTTCCATGGGTTGACTTAG
126 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
27928972 GCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGACCAAGGGTTGCAGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGTAGGATCGAT-
* * * *
27929037 GCACGCAGGGTGGATCGGGCTGATCCCCGATTTACGTATTTTGCCTCTCCAGTCGGCTGAGCACC
65 GCACGCAGGG-GGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCACC
* *
27929102 CGCATGCTCGTTTTGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
27929130 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
27929157 CATACGGAGT
Statistics
Matches: 267, Mismatches: 67, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 35 0.13
158 111 0.42
159 117 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGTAGGATCGATG
CACGCAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27929159 original size:26 final size:26
Alignment explanation
Indices: 27929130--27929182 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27929120 GTTGGCTTAG
27929130 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27929156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27929182 G
1 G
27929183 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27934679 original size:26 final size:26
Alignment explanation
Indices: 27934643--27934695 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27934633 GTTGGCTTAG
27934643 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
27934669 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
27934695 G
1 G
27934696 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:27935406 original size:26 final size:26
Alignment explanation
Indices: 27935377--27935428 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27935367 GTTGACTTAG
27935377 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27935403 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27935429 TATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27936226 original size:919 final size:915
Alignment explanation
Indices: 27934448--27937271 Score: 4511
Period size: 919 Copynumber: 3.1 Consensus size: 915
27934438 CATTTCATGG
* *
27934448 GTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAATAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATAT
* * * * * * *
27934513 CAGACCGGACTGCACGTTGTGGCAGCAGGATCGACAGCATGCAGGGGTAGACCGGGTCGATCCCC
66 CAGACCAGACTACACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGGCCGATCCTC
* * * * * * *
27934578 AGCTTGCACATTCTGCCTCTCCGATTGGCTGACCGCCCACACGTTCGTTTCGTGGGTTGGCTTAG
131 GGCTTGCCCATTCTGCCTCTCTGATCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAG
27934643 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
196 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
* *
27934708 GGTGCGCATACTGAGGTCGGGCATGTGTTGGTGCCGCATTTTTTTCACCCGGGGCACCATCGCCG
261 GGTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTC-CCTGGGGCACCAT--CCG
* * **
27934773 GAGCATCGTTGGAGCATCACCGGAGAGCCTAACCGACGGCATTGGGGATTCCGACGATTGGGGGG
323 GAGCATCGTTGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGGTGATTGGGGGG
* * *
27934838 CTGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCTTA
388 CCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
27934903 TCCCTCATTAAACCTCGAGAACTCACACCACCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTG
453 TCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTG
*
27934968 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAACAGTCACAAAATCTTCTCCAC
518 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCAC
* * *
27935033 TACAAGTTTTTAATTGAATTTTTTTATGCATGCCAACAAAAATACAGGGATCACCTCTACCAATT
583 TTCAAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAATT
* *
27935098 TTGGGGACAAACCTTTTTCTAAAAAAATTTTAAAATATCTCGAACCACAAAAAGTTTCAAAAATC
648 TTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATC
*
27935163 ATGAAAAATAGAAAACGGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTA
713 GTGAAAAATAGAAAACGGGTCACCTTGCCACAAAACTTCACATGAAGGCTTA-GGGAACATTGTA
27935228 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACC
777 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACC
27935293 TACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCTCCCGCACGTTC
842 TACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCTCCCGCACGTTC
27935358 GTTCCGTGA
907 GTTCCGTGA
27935367 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATAT
27935432 CAGACCAGACTACACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGGCCGATCCTC
66 CAGACCAGACTACACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGGCCGATCCTC
27935497 GGCTTGCCCATTCTGCCTCTCTGATCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAG
131 GGCTTGCCCATTCTGCCTCTCTGATCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAG
*
27935562 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGATTTTGAGCCAC
196 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
* **
27935627 GGTGTGCATACTGAGCTCGGGCATGTGTTGGTGCCATATTTTTTTCGCCTGGGGCACCATCATCG
261 GGTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTC-CCTGGGGCACCATC--CG
*
27935692 GAGCATCGTTGGAGCATCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGGTGATTGGGGGG
323 GAGCATCGTTGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGGTGATTGGGGGG
*
27935757 CCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTA
388 CCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
27935822 TCCCTCATCAAACCTC-AGGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTACT
453 TCCCTCATCAAACCTCGA-GAACTCACACCTCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCT
27935886 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCA
517 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCA
* *
27935951 CTTCGAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAAA
582 CTTCAAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAAT
**
27936016 TTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAAAGACAAAAAGTTTCAAAAAT
647 TTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAAT
*
27936081 CGTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGAGGAACATTGT
712 CGTGAAAAATAGAAAACGGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAG-GGAACATTGT
* *
27936146 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGACGTGCTTGAACCTAC
776 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCAC
* * * * *
27936211 CTACCACCCGTTCGATCCCCGGCTT-CTGCATCCTGCCTCTCTGGTCGACTGAGCGCCCGCACGC
841 CTACCACCCGTTCGATCCTCGGCTTGC-GCATCCTGCCTCTCTGGTCGGCTAAGCTCCCGCACGT
* *
27936275 TCATTCCGTGG
905 TCGTTCCGTGA
*
27936286 GTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATAT
27936351 CAGACCAGACTACACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGGCCGATCCTC
66 CAGACCAGACTACACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGGCCGATCCTC
27936416 GGCTTGCCCATTCTGCCTCTCTGATCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAG
131 GGCTTGCCCATTCTGCCTCTCTGATCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGGC-T--
27936481 GCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCATGTCTAAGCATACGGAGTTC
193 ---TA--G-G--CA-T--A---C---G------GAGTTCATTCCATGTCTAAGCATACGGAGTTC
* * * * *
27936546 ATTCCTAGTCTAAAATTTTGAGCCACGGTACGTATACTGAGCTTGGGCATGTGTTGGTGCGGCA-
235 ATTCCTAGTCTAAGATTTTGAGCCACGGTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCAT
*
27936610 TTTTTT---T----CA-C--CCGGGGCA-C-------CATCGCCGGAGAGCCTAACCGACGGCAT
300 TTTTTTCCCTGGGGCACCATCCGGAGCATCGTTGGAGCATCGCCGGAGAGCCTAACCGACGGCAT
* *
27936657 TAGGGGTTCCGGTGATTGGGGGGGCCGAGGGGGTGTGCATACATGATGTACGATGGGTGCTGGTA
365 TGGGGGTTCCGGTGATT-GGGGGGCCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTA
* * *
27936722 CTTGGCCCTTATCTTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCTCCTTAAAAAGC
429 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAAAGC
*
27936787 ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTC
494 ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
27936852 AAACAGTCACAAAATCTTCTCCACTTTAAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAA
559 AAACAGTCACAAAATCTTCTCCACTTCAAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAA
27936917 ATACAGGGATCACCTCTACCAATTTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCC
624 ATACAGGGATCACCTCTACCAATTTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCC
*
27936982 GAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGGGTCACCTTGCCACAAAACTTCAC
689 GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCACCTTGCCACAAAACTTCAC
*
27937047 ATGAAGGCTTAGGGAAACATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGGCAGAAA
754 ATGAAGGCTTAGGG-AACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
27937112 TATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCT
818 TATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCT
27937177 GGTCGGCTAAGCTCCCGCACGTTCGTTCCGTGA
883 GGTCGGCTAAGCTCCCGCACGTTCGTTCCGTGA
27937210 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
27937272 GCATACGGAG
Statistics
Matches: 1774, Mismatches: 96, Indels: 65
0.92 0.05 0.03
Matches are distributed among these distances:
917 1 0.00
918 3 0.00
919 1043 0.59
920 1 0.00
923 45 0.03
924 564 0.32
925 4 0.00
927 1 0.00
928 1 0.00
930 3 0.00
931 7 0.00
933 2 0.00
935 1 0.00
936 3 0.00
939 1 0.00
940 1 0.00
944 6 0.00
945 87 0.05
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (915 bp):
GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATAT
CAGACCAGACTACACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGGCCGATCCTC
GGCTTGCCCATTCTGCCTCTCTGATCGGCTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
GGTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCCCTGGGGCACCATCCGGAG
CATCGTTGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGGTGATTGGGGGGCCG
AGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCTCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTC
AAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAATTTTG
GGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGAACATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACC
ACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCTCCCGCACGTTCGTTC
CGTGA
Found at i:27936332 original size:26 final size:26
Alignment explanation
Indices: 27936296--27936347 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27936286 GTTAACTTAG
27936296 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27936322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27936348 TATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27936517 original size:26 final size:26
Alignment explanation
Indices: 27936481--27936558 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
27936471 GTTGGCTTAG
*
27936481 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
27936507 GCATATAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
27936533 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
27936559 AATTTTGAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:27937249 original size:26 final size:26
Alignment explanation
Indices: 27937220--27937298 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
27937210 GTTGACTTAG
*
27937220 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27937246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
27937272 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27937298 G
1 G
27937299 ATCGGACTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27937661 original size:26 final size:26
Alignment explanation
Indices: 27937625--27937677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27937615 GTTAACTTAG
27937625 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27937651 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27937677 G
1 G
27937678 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27938043 original size:159 final size:158
Alignment explanation
Indices: 27937789--27938153 Score: 405
Period size: 159 Copynumber: 2.3 Consensus size: 158
27937779 CCCACATACC
*
27937789 CATTTCGTGGGTTGGCTTAGGTATAG-GGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGG
1 CATTTCGTGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGG
* * * * * * * * * *
27937853 GTTGTGGTAGCGGGACCGGTAGTACACAGAGGGGGATC-AGGCTGATCCCCGGCTTGCGCACTCT
65 GTTATGGCAACAGGACCGGCAGCACACAGAGGGGGACCGAGGC-AATCCCCAG-TTGCGCACTAT
** * *
27937917 GCCTCTCCGATTGGCTAAGC-ACCTGCACGCT
128 GCCTCTCCGACCGACTAAGCGACC-GAACGCT
* * *
27937948 CGTTTCGTGGGTTGGCTTAGGCATGCGAAGTTCATTCCATGTCTAAGTCCCAACCGGATCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGG
*** * * *
27938013 TTATGGCAACAGGACCGGCAGCATGTAGAGGGGGACCGAGTCAATCCCCAGTTTCGCATTATGCC
66 TTATGGCAACAGGACCGGCAGCACACAGAGGGGGACCGAGGCAATCCCCAGTTGCGCACTATGCC
*
27938078 TCTCCGACCGACTCAGCGACCGAACGCT
131 TCTCCGACCGACTAAGCGACCGAACGCT
* * *
27938106 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGC
1 CATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCAT-GTCTAAGC
27938154 ACGCGGAGTT
Statistics
Matches: 171, Mismatches: 31, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 71 0.42
159 96 0.56
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
CATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGG
TTATGGCAACAGGACCGGCAGCACACAGAGGGGGACCGAGGCAATCCCCAGTTGCGCACTATGCC
TCTCCGACCGACTAAGCGACCGAACGCT
Found at i:27939226 original size:26 final size:26
Alignment explanation
Indices: 27939190--27939242 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27939180 GTTGACCTAG
*
27939190 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
27939216 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
27939242 G
1 G
27939243 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27939583 original size:26 final size:26
Alignment explanation
Indices: 27939546--27939598 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27939536 GTTGAATTAG
*
27939546 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
27939572 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27939598 G
1 G
27939599 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27939884 original size:84 final size:84
Alignment explanation
Indices: 27939731--27939892 Score: 207
Period size: 84 Copynumber: 1.9 Consensus size: 84
27939721 TCACTTAGGA
* * * * * *
27939731 ATACAAAGTTCATTCCAAGTCTAAGCCCCAATCAGACCTAGGGTTGTGGCAACGGGACCAGCAGC
1 ATACAAAGTTCATTCCAAGTCTAAACCCCAACCAGACCGAGGGTTATGGCAACAGGACCAGCAGA
*
27939796 ACGCAGAGGGGGATCAGGC
66 ACGCAGAAGGGGATCAGGC
* * * * **
27939815 ATACAGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTATGGCAACAGGACTGGCAGA
1 ATACAAAGTTCATTCCAAGTCTAAACCCCAACCAGACCGAGGGTTATGGCAACAGGACCAGCAGA
27939880 ACGCAGAAGGGGA
66 ACGCAGAAGGGGA
27939893 CCGTGTCGAT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 65 1.00
ACGTcount: A:0.30, C:0.25, G:0.29, T:0.15
Consensus pattern (84 bp):
ATACAAAGTTCATTCCAAGTCTAAACCCCAACCAGACCGAGGGTTATGGCAACAGGACCAGCAGA
ACGCAGAAGGGGATCAGGC
Found at i:27940992 original size:159 final size:156
Alignment explanation
Indices: 27940431--27941028 Score: 466
Period size: 158 Copynumber: 3.8 Consensus size: 156
27940421 CAGGATCGAT
* * * *
27940431 AGCACGCAGGGGGGATCGGGTCGATCCCGGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCAC
1 AGCACGCAGAGGGGATCGAGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCAC
** * ** * * * *
27940496 CCGCACACCCATTTTATGGGTTGGCTTAAGCATA-GGAAGTTCATT-CCATGTCTAAGC-CCCAG
64 CCGCAC-GTCGTTTCGTGGGTTGACTTAGGCATACGG-AGTTCATTCCCATATCTAAGCACTC-G
* * * **
27940558 CC-GAACTGAGGGTTGTGGCAGCG-GCACCGGT
126 CCGGATC-GAGGGTTGTAGCAACGAG-ACCGAC
* *
27940589 AGCACACAGAGGGGGACTGGA-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCA
1 AGCACGCAGA-GGGGA-TCGAGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCA
* * * *
27940653 CCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTCGC
63 CCCGCACGT-CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAAGCACTCGC
* * **
27940717 TGGATCGAGGGTTGTGGCAACGAGACCGGT
127 CGGATCGAGGGTTGTAGCAACGAGACCGAC
* * * * * * * * * * *
27940747 AGCATGCAGAGGGGATCGAGCCAATCCCGATCTTGCACGTTATGCCTCTCCGATCAGCTCAACAC
1 AGCACGCAGAGGGGATCGAGTCGATCCCG-GCTTGCGCATTCTGCCTCTCCG-GCCGCTGAGCAC
* * * *
27940812 CCGAACGTTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATTGGAC
64 CCGCACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAAGCACTCG-C
*
27940875 CGGATCGAGGGTTGTAGC-ACTTG-GATCGAC
127 CGGATCGAGGGTTGTAGCAAC--GAGACCGAC
* * *
27940905 AGCACGCAGGAGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCTGTTGAGCA
1 AGCACGCA-GAGGGGATCGAGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCA
* *
27940970 CCAGCACGCTCGTTTCGTGGGTTGGA-TTAGGCATACGGAGTTCATT-CCATGTCTAAGCA
63 CCCGCACG-TCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCATATCTAAGCA
27941029 TATGGAGTTC
Statistics
Matches: 357, Mismatches: 61, Indels: 42
0.78 0.13 0.09
Matches are distributed among these distances:
156 7 0.02
157 30 0.08
158 180 0.50
159 131 0.37
160 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
AGCACGCAGAGGGGATCGAGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCACCC
GCACGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAAGCACTCGCCGGA
TCGAGGGTTGTAGCAACGAGACCGAC
Found at i:27941036 original size:26 final size:26
Alignment explanation
Indices: 27941000--27941052 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27940990 GTTGGATTAG
27941000 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
27941026 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
27941052 G
1 G
27941053 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:27941584 original size:26 final size:26
Alignment explanation
Indices: 27941554--27941606 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27941544 GTTGGCTTAG
27941554 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27941580 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27941606 G
1 G
27941607 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27942323 original size:26 final size:26
Alignment explanation
Indices: 27942287--27942339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27942277 GTTGACTTAG
27942287 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
27942313 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27942339 G
1 G
27942340 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27942823 original size:26 final size:26
Alignment explanation
Indices: 27942787--27942839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27942777 GGTGGCTTAG
*
27942787 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
27942813 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27942839 G
1 G
27942840 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27943026 original size:26 final size:26
Alignment explanation
Indices: 27942996--27943048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27942986 GTTGACTTAG
27942996 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27943022 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27943048 G
1 G
27943049 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27943384 original size:159 final size:156
Alignment explanation
Indices: 27943063--27943524 Score: 477
Period size: 159 Copynumber: 2.9 Consensus size: 156
27943053 AATCGAAATG
** * * *
27943063 AGGGTTGCAGTAGCAGGATCGGTAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTC
1 AGGGTTGC-G-AGCAGGATCGACAGCAAGCAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTC
* * *
27943128 TGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
64 TGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
27943193 ATTCC-ACGTCTAAGCCCCAGCAAGACCT
129 ATTCCTA-GTCTAAGCCCCAGCAAGACCT
* *
27943221 AGGGTTGCG-GCAGCGAGTCTGACAGCAAGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCAT
1 AGGGTTGCGAGCAG-GA-TC-GACAGCAAGCAG-GGGGGATCGAGCCGATCCCCAGCTTGCGCAT
* * * * * *
27943285 TATGCCTCTCCGACCGGCTCAACGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
62 TCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* ** * **
27943350 TCAGTCCTAGTCTAAG-ATCGGACTGGA-CT
127 TCATTCCTAGTCTAAGCCCCAG-CAAGACCT
* * * *
27943379 GAGGGTTGCGATAGTAGGATCGACAGCATGCAGGGGGGA-CTGAGTCGATCCCCAGCTTGTGCAT
1 -AGGGTTGCG--AGCAGGATCGACAGCAAGCAGGGGGGATC-GAGCCGATCCCCAGCTTGCGCAT
* * * * * *
27943443 TCTGCCTCTCCGATTGGTTGAGTGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACCGAGT
62 TCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
27943508 TCATTCCCT-GTCTAAGC
127 TCATT-CCTAGTCTAAGC
27943525 ATGCAGAGTT
Statistics
Matches: 250, Mismatches: 41, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
155 4 0.02
156 2 0.01
157 4 0.02
158 109 0.44
159 123 0.49
160 3 0.01
161 2 0.01
162 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
AGGGTTGCGAGCAGGATCGACAGCAAGCAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTG
CCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCTAGTCTAAGCCCCAGCAAGACCT
Found at i:27943490 original size:158 final size:157
Alignment explanation
Indices: 27943022--27943523 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 157
27943012 CCCAGTCTAA
* * * * * **
27943022 GCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGAAATGAGGGTTGC-AGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGACT-GGACTGAGGGTTGCGA-TAGCAGGATCGAC
* * *
27943086 AGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
64 AGCAAGCAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
27943151 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * **
27943180 GCATAGGGAGTTCATTCC-ACGTCTAAGCCCCAGCAAGACCT-AGGGTTGCG---GCAGCGAGTC
1 GCATACGGAGTTCATTCCTA-GTCTAAGATCGA-CTGGA-CTGAGGGTTGCGATAGCAG-GA-TC
* * * * *
27943240 TGACAGCAAGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGACCGGCTC
61 -GACAGCAAGCAG-GGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTG
* * *
27943305 AACGCCCGTACGCTCATTTCGTGGGTTGACTTAG
124 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
27943339 GCATACGGAGTTCAGTCCTAGTCTAAGATCGGACTGGACTGAGGGTTGCGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATC-GACTGGACTGAGGGTTGCGATAGCAGGATCGACA
* * * * * *
27943404 GCATGCAGGGGGGA-CTGAGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGATTGGTTGAGTGC
65 GCAAGCAGGGGGGATC-GAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
27943468 CTGCACGCTCATTTCATGGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
27943497 GCATACCGAGTTCATTCCCT-GTCTAAG
1 GCATACGGAGTTCATT-CCTAGTCTAAG
27943524 CATGCAGAGT
Statistics
Matches: 278, Mismatches: 50, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
155 4 0.01
156 2 0.01
157 4 0.01
158 134 0.48
159 125 0.45
160 4 0.01
161 2 0.01
162 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGACTGGACTGAGGGTTGCGATAGCAGGATCGACAG
CAAGCAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:27944352 original size:158 final size:157
Alignment explanation
Indices: 27943904--27944398 Score: 451
Period size: 158 Copynumber: 3.1 Consensus size: 157
27943894 CTAAGCATAT
* * * *
27943904 GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACAC
1 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
* * ** ** * *
27943969 AGGAGGGACCGAATC-GATCCCCTACTTGTGCATTCTACCTC-TCTAGCCGACTGAGCGCCCGCA
66 AGGGGGGATCGAGCCAG-TCCCCGGCTTATGCATTCTACCTCTTCGA-CCG-CTGAGCGCCCGCA
* * * ** * *
27944032 CGCCCATTTCGTGGGTTGGCTTAGGCATAC
128 CGCTCATTTCATAGGTTAACTTAGACAAAC
** * * *
27944062 GAAGTTCATT-CCATGTCTAA-CCCTAG-CCGGACCGAGGGATGTGGCAGCGGGACCGACAGCAC
1 GAAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * * * * * * * * *
27944124 ACAGAGGGGGATCGGGCCAATCCCCGGCTTACGTATTATGCCTCTCCGATCAGCTCAGCACCCGA
64 ACAG-GGGGGATCGAGCCAGTCCCCGGCTTATGCATTCTACCTCTTCGA-CCGCTGAGCGCCCGC
*
27944189 ACGCTCATTTCATAGGTTAACTTTGACAAAC
127 ACGCTCATTTCATAGGTTAACTTAGACAAAC
* * *
27944220 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
1 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
*
27944285 AGGGGGGATCGAGCCAGTCCCCGGCTTATGCATTCTACCTCTTCGACCTGCTGAGCGCCCGCGCG
66 AGGGGGGATCGAGCCAGTCCCCGGCTTATGCATTCTACCTCTTCGACC-GCTGAGCGCCCGCACG
* * ** * *
27944350 CTCATTTCGTGGGTTGGCTTAGGCATAC
130 CTCATTTCATAGGTTAACTTAGACAAAC
**
27944378 GAAGTTCATTCCGTGTCTAAG
1 GAAGTTCATTCCCAGTCTAAG
27944399 CATACGGAGT
Statistics
Matches: 261, Mismatches: 67, Indels: 18
0.75 0.19 0.05
Matches are distributed among these distances:
157 38 0.15
158 180 0.69
159 43 0.16
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
AGGGGGGATCGAGCCAGTCCCCGGCTTATGCATTCTACCTCTTCGACCGCTGAGCGCCCGCACGC
TCATTTCATAGGTTAACTTAGACAAAC
Found at i:27944409 original size:26 final size:26
Alignment explanation
Indices: 27944372--27944424 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27944362 GTTGGCTTAG
**
27944372 GCATACGAAGTTCATTCCGTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
27944398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27944424 G
1 G
27944425 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27945109 original size:26 final size:26
Alignment explanation
Indices: 27945073--27945125 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27945063 GTTGGCTTAG
*
27945073 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
27945099 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27945125 G
1 G
27945126 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27945280 original size:26 final size:26
Alignment explanation
Indices: 27945244--27945295 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27945234 TGACTTAGGC
*
27945244 ATACGGAGTTCATCTCC-AGTCTAAGA
1 ATACGAAGTTCAT-TCCAAGTCTAAGA
27945270 ATACGAAGTTCATTCCAAGTCTAAGA
1 ATACGAAGTTCATTCCAAGTCTAAGA
27945296 TCGAACTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCAAGTCTAAGA
Found at i:27946266 original size:26 final size:26
Alignment explanation
Indices: 27946217--27946269 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27946207 TCATGGGTTG
27946217 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
27946243 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
27946269 G
1 G
27946270 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:27946459 original size:170 final size:170
Alignment explanation
Indices: 27946243--27946611 Score: 413
Period size: 171 Copynumber: 2.2 Consensus size: 170
27946233 CCATGTCTAA
** * * * *
27946243 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAGGACCAATA
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCCAACCGGATCGAGGGTTGCGGTAGCAAGACCAACA
* *
27946308 GCGAGATCGACAGCACGC-AAGGGGGATCTG-GCCAATCCCCGACTTGTGCATTCTGCCTTTTC-
65 GCGAGATCGACAGCACGCAAAGGGGGATC-GAGCCAATCCCCGACTTGCGCATTATGCCTTTTCA
** * *
27946370 GATTGGCTGAGCACCCGCACGCTCGTTTTATGGGTTGGCTTAG
129 G-CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * **
27946413 GCATACGGACTTCATTCCATGTCTAAGCCCCAACCGGA-CTGAGGGTTGTGGTAGCAAGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGCCCCAACCGGATC-GAGGGTTGCGGTAGCAAGACCAAC
* * * * * *
27946477 AGCGAGATCGACAGTACGCAAAGGGGGATCGAGCTAATCCCTGGCTTGCGTATTATGCGTTTTCA
64 AGCGAGATCGACAGCACGCAAAGGGGGATCGAGCCAATCCCCGACTTGCGCATTATGCCTTTTCA
* ** *
27946542 GCCGGTTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAG
129 GCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
*
27946584 GCATACGGAGTTCATCCCCAGTCTAAGC
1 GCATACGGAGTTCAT-TCCAGTCTAAGC
27946612 ATACGGATTT
Statistics
Matches: 165, Mismatches: 28, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
169 4 0.02
170 67 0.41
171 90 0.55
172 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCAGTCTAAGCCCCAACCGGATCGAGGGTTGCGGTAGCAAGACCAACAG
CGAGATCGACAGCACGCAAAGGGGGATCGAGCCAATCCCCGACTTGCGCATTATGCCTTTTCAGC
CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:27946614 original size:26 final size:26
Alignment explanation
Indices: 27946584--27946636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27946574 GTTGACTTAG
27946584 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27946610 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27946636 G
1 G
27946637 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27947639 original size:157 final size:159
Alignment explanation
Indices: 27947187--27947643 Score: 381
Period size: 159 Copynumber: 2.9 Consensus size: 159
27947177 TAGGATTGGT
* * * * * * * * * *
27947187 AGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACC-CTCTGGCCAGATGAGCA
1 AGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTACACATTATGCCTCTCTGACCGGCTTAGCA
* * * * * *
27947250 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
66 CCCGAACGCTCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * *** *
27947315 GGACCGAGGGTTGTGGCAGTGGGACCGAC
131 GGACCGAGGGTTGCGACAACAGGACAGAC
* * * *
27947344 AGCACGCAGAGGGGGATCGAGCCAATCCCCAGCTTGCACATTATGCCTCTCTGGCTGGCTTAGCA
1 AGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTACACATTATGCCTCTCTGACCGGCTTAGCA
* * * ** * * * **
27947409 TCCGAATGCTCGTTTAATGGGTTCACCTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGA
66 CCCGAACGCTCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-
* *
27947472 CCGGATCGAGGGTTGCGACAACAGGATAGAC
129 CCGGACCGAGGGTTGCGACAACAGGACAGAC
* ** * * * *
27947503 AGCACGCAGA-GGGGACC-AGGTCGGTCCTCGGCTTACGCATTTTGCCTCT-TCGACCGG-TTAG
1 AGCACGCAGAGGGGGACCGA-GCCAATCCCCAGCTTACACATTATGCCTCTCT-GACCGGCTTAG
* * *
27947564 CGCCCGTACGCTCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
64 CACCCGAACGCTCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
*
27947629 TCGGACCGAGGGTTG
129 CCGGACCGAGGGTTG
27947644 TGGCAACGAG
Statistics
Matches: 236, Mismatches: 56, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 72 0.31
158 68 0.29
159 90 0.38
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTACACATTATGCCTCTCTGACCGGCTTAGCA
CCCGAACGCTCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
GGACCGAGGGTTGCGACAACAGGACAGAC
Found at i:27947663 original size:157 final size:158
Alignment explanation
Indices: 27947187--27947673 Score: 403
Period size: 157 Copynumber: 3.1 Consensus size: 158
27947177 TAGGATTGGT
* * * * * * * * * * *
27947187 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACC-CTCTGGCCAGATGAGCAC
1 AGCACGCAGAGGGGACCGAGCCAATCCCCAGCTTACACATTATGCCTCTCTGACCGGCTTAGCAC
* * * * * *
27947251 CCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
66 CCGAACGCTCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
** * *
27947316 GACCGAGGGTTGTGGCAGTGGGACCGAC
131 GACCGAGGGTTGTGGCAACGAGATCGAC
* * * *
27947344 AGCACGCAGAGGGGGATCGAGCCAATCCCCAGCTTGCACATTATGCCTCTCTGGCTGGCTTAGCA
1 AGCACGCAGA-GGGGACCGAGCCAATCCCCAGCTTACACATTATGCCTCTCTGACCGGCTTAGCA
* * * ** * * * **
27947409 TCCGAATGCTCGTTTAATGGGTTCACCTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGA
65 CCCGAACGCTCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-
* * * *
27947472 CCGGATCGAGGGTTGCGACAAC-AGGATAGAC
128 CCGGACCGAGGGTTGTGGCAACGA-GATCGAC
* ** * * * *
27947503 AGCACGCAGAGGGGACC-AGGTCGGTCCTCGGCTTACGCATTTTGCCTCT-TCGACCGG-TTAGC
1 AGCACGCAGAGGGGACCGA-GCCAATCCCCAGCTTACACATTATGCCTCTCT-GACCGGCTTAGC
* * * *
27947565 GCCCGTACGCTCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
64 ACCCGAACGCTCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
*
27947630 CGGACCGAGGGTTGTGGCAACGAGATCGGC
129 CGGACCGAGGGTTGTGGCAACGAGATCGAC
*
27947660 AGCACACAGAGGGG
1 AGCACGCAGAGGGG
27947674 GATCGGGCTG
Statistics
Matches: 258, Mismatches: 62, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 95 0.37
158 68 0.26
159 89 0.34
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
AGCACGCAGAGGGGACCGAGCCAATCCCCAGCTTACACATTATGCCTCTCTGACCGGCTTAGCAC
CCGAACGCTCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GACCGAGGGTTGTGGCAACGAGATCGAC
Found at i:27947754 original size:26 final size:26
Alignment explanation
Indices: 27947718--27947770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27947708 CTTGGCTTAG
*
27947718 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27947744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27947770 G
1 G
27947771 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27948418 original size:26 final size:26
Alignment explanation
Indices: 27948389--27948441 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27948379 GTTGACTTAG
27948389 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
27948415 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27948441 G
1 G
27948442 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27948768 original size:26 final size:26
Alignment explanation
Indices: 27948720--27948771 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27948710 TTGGCTTAGC
**
27948720 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCAACCCATGTCTAAG
27948746 CATACGGAGTTCACACCCA-GTCTAAG
1 CATACGGAGTTCA-ACCCATGTCTAAG
27948772 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCAACCCATGTCTAAG
Found at i:27949479 original size:26 final size:26
Alignment explanation
Indices: 27949443--27949495 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27949433 GTTAACTTAG
*
27949443 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTAATTCCC-AGTCTAA
27949469 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
27949495 G
1 G
27949496 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:27949760 original size:158 final size:158
Alignment explanation
Indices: 27949509--27949809 Score: 444
Period size: 158 Copynumber: 1.9 Consensus size: 158
27949499 AGATCGGACC
* *
27949509 GAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGTGCATT
1 GAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATT
* * * *
27949574 CTGCCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 CCGCCTCTCCGACCGGCTAAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
27949639 CATTCCATGTCTATGCCCAAGCCGAATT
131 CATTCCATGTCTATGCCCAAGCCGAATT
* * * * * *
27949667 GAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGTCGAT-CCCTGACTTGTGCA
1 GAGGGTTGCGACAGCAGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCAG-CTTGTGCA
* *
27949731 TTCCGCCTCTCCGACTGGCTAAGCG-CCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
64 TTCCGCCTCTCCGACCGGCTAAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAG
27949795 TTCATTCCATGTCTA
129 TTCATTCCATGTCTA
27949810 AGCATACGGA
Statistics
Matches: 127, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
158 83 0.65
159 44 0.35
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (158 bp):
GAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATT
CCGCCTCTCCGACCGGCTAAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTATGCCCAAGCCGAATT
Found at i:27949821 original size:26 final size:26
Alignment explanation
Indices: 27949785--27949837 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27949775 GTTGGCTTAG
27949785 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27949811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27949837 G
1 G
27949838 AGTCTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27952922 original size:26 final size:26
Alignment explanation
Indices: 27952886--27952937 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27952876 CTAGTTTGAT
* *
27952886 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27952912 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27952938 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27959568 original size:26 final size:26
Alignment explanation
Indices: 27959530--27959582 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27959520 GGCTCAAAAT
*
27959530 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCATATG
*
27959556 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACACCATATG
27959582 C
1 C
27959583 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCATATG
Found at i:27959849 original size:159 final size:159
Alignment explanation
Indices: 27959555--27959961 Score: 409
Period size: 159 Copynumber: 2.6 Consensus size: 159
27959545 AACACCGTAT
* * * *
27959555 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAGCCATGAAACGAGCGTGTC-GACGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTG-CGGGCGCTCA
* * * * * * * *
27959619 GCCAGCCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACTCGGTCCTCTCCTGTGAGCTATCGAT
65 GCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCTCTCCTCTGAGCCACCGAT
** *
27959684 CCTGCTACCGTAACCTTCGGTCCGGTCT-GA
130 CCTGCTACCACAACCCTCGGTCCGG-CTGGA
* * *
27959714 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
27959778 GCCAGTCGAAGAGGCATAATGTGCAAGCCGGGGATC-AGCTCGATCC-C-CCTCTGCATGCCGCC
65 GCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CTCGATCCTCTCCTCTG-A-GCCACC
* * *
27959840 GGTCCTGCTACCACAACCCTCGGTCTGGCTGGG
127 GATCCTGCTACCACAACCCTCGGTCCGGCTGGA
* * * * * * *
27959873 GCTTAGACATAGAATTAACTCCCTAT--A-AAGCCAACCAACGGAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
27959935 CCGGTCGAAGAGGCAGAATGCGCAAGC
66 CCAGTCGAAGAGGCAGAATGCGCAAGC
27959962 TACGGATCAG
Statistics
Matches: 204, Mismatches: 37, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
156 53 0.26
157 6 0.03
158 7 0.03
159 137 0.67
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCTCTCCTCTGAGCCACCGATC
CTGCTACCACAACCCTCGGTCCGGCTGGA
Found at i:27960043 original size:26 final size:26
Alignment explanation
Indices: 27960007--27960091 Score: 140
Period size: 26 Copynumber: 3.3 Consensus size: 26
27959997 CTCCATCCGG
27960007 TCTG-ATG-TTAGACT-GGGAATGAAC
1 TCTGTATGCTTAGACTAGGG-ATGAAC
27960031 TCTGTATGCTTAGACTAGGGATGAAC
1 TCTGTATGCTTAGACTAGGGATGAAC
27960057 TCTGTATGCTTAGACTAGGGATGAAC
1 TCTGTATGCTTAGACTAGGGATGAAC
27960083 TCTGTATGC
1 TCTGTATGC
27960092 CTAAGTCATT
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
24 4 0.07
25 3 0.05
26 48 0.83
27 3 0.05
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (26 bp):
TCTGTATGCTTAGACTAGGGATGAAC
Found at i:27960436 original size:26 final size:26
Alignment explanation
Indices: 27960407--27960459 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27960397 CCGATCTGAT
*
27960407 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27960433 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27960459 C
1 C
27960460 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27960895 original size:159 final size:157
Alignment explanation
Indices: 27960436--27960935 Score: 502
Period size: 159 Copynumber: 3.2 Consensus size: 157
27960426 CCGTATGCTT
* * *
27960436 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGCGCTCAGCCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGA
* * ** * * * *
27960501 TCAGAGAGGCCGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCTATCCTGCT
66 TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGCT
* * * *
27960566 GCCGCAACCCTCGATCCGATCTGATCTT
131 -CCGCAACCCTTGGTCCGATCTGAGCTG
* * * * * * * *
27960594 AGAC-TAGGAAGGAATTTCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGTGCTGAGCCA
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCG
* * * * * *
27960658 ACCGGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTTCATGCTGCCGGTCCCG
65 ATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTACATGCTGTCGATCCTG
* * *
27960723 CTGCCACAGCCCTTGGTCCGA-CTGGGGCTG
129 CT-CCGCAACCCTTGGTCCGATCT-GAGCTG
* * * * *
27960753 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGGGCGTGCGGGTGCTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGA
* * * *
27960818 TCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACATGTTGTCGATCCTACT
66 TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGCT
* * * *
27960883 ATCGCAACCCCTTGGTCCGATCCGATCTT
131 -CCGCAA-CCCTTGGTCCGATCTGAGCTG
27960912 AGAC-TGGGAATGAACTCCGTATGC
1 AGACAT-GGAATGAACTCCGTATGC
27960936 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 63, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 111 0.41
159 158 0.58
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGA
TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGCT
CCGCAACCCTTGGTCCGATCTGAGCTG
Found at i:27960938 original size:26 final size:26
Alignment explanation
Indices: 27960909--27960961 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27960899 CCGATCCGAT
27960909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27960935 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27960961 C
1 C
27960962 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27962015 original size:26 final size:26
Alignment explanation
Indices: 27961972--27962024 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27961962 CCGGTCCGAT
* *
27961972 CTTAGACTTGGAAAGAACTCTGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
* *
27961998 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
27962024 C
1 C
27962025 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:27962389 original size:26 final size:26
Alignment explanation
Indices: 27962339--27962391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27962329 CCAGTCTGAT
**
27962339 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27962365 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27962391 C
1 C
27962392 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27963103 original size:26 final size:26
Alignment explanation
Indices: 27963062--27963114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27963052 GGCTCAAAAT
27963062 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27963088 CTTAGACATGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27963114 C
1 C
27963115 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27964142 original size:26 final size:26
Alignment explanation
Indices: 27964091--27964142 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27964081 GGCTCAAACT
* *
27964091 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
* *
27964117 CTTAGACAGGGAATGCACTCTATATG
1 CTTAGACAGGGAATGAACTCCATATG
27964143 TCTACGCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:27964462 original size:26 final size:26
Alignment explanation
Indices: 27964426--27964478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27964416 CCGATTTGAT
27964426 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
* * *
27964452 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
27964478 C
1 C
27964479 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:27964812 original size:26 final size:26
Alignment explanation
Indices: 27964782--27964831 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
27964772 CCATTCTGAT
27964782 CTTAGACTGGGAATGAACTCCATACA
1 CTTAGACTGGGAATGAACTCCATACA
* *
27964808 CTTAGATTGGGGATGAACTCCATA
1 CTTAGACTGGGAATGAACTCCATA
27964832 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATACA
Found at i:27965738 original size:26 final size:26
Alignment explanation
Indices: 27965709--27965761 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27965699 CCGGTCTGAT
*
27965709 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
27965735 CTTATACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
27965761 C
1 C
27965762 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:27967140 original size:26 final size:25
Alignment explanation
Indices: 27967111--27967161 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
27967101 GCTCAAACTT
27967111 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCC-TATGC
27967137 TTAGACATGGAATGAACTCCTATGC
1 TTAGACATGGAATGAACTCCTATGC
27967162 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
TTAGACATGGAATGAACTCCTATGC
Found at i:27967492 original size:25 final size:26
Alignment explanation
Indices: 27967464--27967515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27967454 TCGATCCAAT
27967464 CTTAGAC-TGAAATGAACTCCATATG
1 CTTAGACATGAAATGAACTCCATATG
* *
27967489 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCATATG
27967515 C
1 C
27967516 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCATATG
Found at i:27968014 original size:26 final size:26
Alignment explanation
Indices: 27967963--27968015 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27967953 CCGGTCCGAT
*
27967963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
27967989 CTTAGATTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
27968015 C
1 C
27968016 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27968412 original size:129 final size:129
Alignment explanation
Indices: 27968182--27968422 Score: 338
Period size: 129 Copynumber: 1.9 Consensus size: 129
27968172 CTTAGACATT
* ** *
27968182 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAGTCGATTGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCACCCGATCGGAGA
* *
27968247 GGTAGAATACGCAAGCTGGGGATCAGCCCGATCCCCCCCTGCATGCTGCCAATCCTGCTGCTGG
66 GGCAGAAGACGCAAGCTGGGGATCAGCCCGATCCCCCCCTGCATGCTGCCAATCCTGCTGCTGG
* * * *
27968311 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGCGTTGACCCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCACCCGATCGGAGA
* * * * * *
27968376 GGCATAAGGCGTAAGCTGGGGATCGGCTCGATCCCCCTCTGCATGCT
66 GGCAGAAGACGCAAGCTGGGGATCAGCCCGATCCCCCCCTGCATGCT
27968423 ACCAGTCCCA
Statistics
Matches: 96, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
129 96 1.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (129 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCACCCGATCGGAGA
GGCAGAAGACGCAAGCTGGGGATCAGCCCGATCCCCCCCTGCATGCTGCCAATCCTGCTGCTGG
Found at i:27968608 original size:26 final size:26
Alignment explanation
Indices: 27968568--27968619 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27968558 TGGTTCGATG
* *
27968568 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAAATCCATATGC
*
27968594 TTAGACTGGGGATGAAATCCATATGC
1 TTAGACTGGGAATGAAATCCATATGC
27968620 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCATATGC
Found at i:27969338 original size:26 final size:26
Alignment explanation
Indices: 27969300--27969352 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27969290 GGCTCAAACT
* *
27969300 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
27969326 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
27969352 C
1 C
27969353 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:27969684 original size:26 final size:26
Alignment explanation
Indices: 27969644--27969694 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27969634 TGGTTAGATC
27969644 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
27969670 TTAGACTGGGTATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
27969695 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:27969881 original size:26 final size:26
Alignment explanation
Indices: 27969852--27969904 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27969842 CCGATCTGAT
27969852 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27969878 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27969904 C
1 C
27969905 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27970390 original size:26 final size:26
Alignment explanation
Indices: 27970354--27970406 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27970344 CTGGTCTGAT
*
27970354 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27970380 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27970406 C
1 C
27970407 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27971677 original size:26 final size:26
Alignment explanation
Indices: 27971639--27971691 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27971629 GGCTTAGACT
27971639 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
27971665 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
27971691 C
1 C
27971692 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Done.