Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 295 of 402
Found at i:27971998 original size:158 final size:157
Alignment explanation
Indices: 27971664--27972006 Score: 390
Period size: 158 Copynumber: 2.2 Consensus size: 157
27971654 AACTCTGTAT
* * *
27971664 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCGCTCAGC
* * *
27971729 CAGTCGGAAAGGCGGAATCACAAGTCAGGGATCGCCCAGGTCCCCCTCTACGTGCTGTCGGTCCC
66 CAGTCAGAAAGGCAGAATCACAAGTCAGGGATCGCCCAGGTCCCCCTCTACGTGCTGTCGATCCC
** *
27971794 GCTGCCACAACCCTCAATCTGGCTTGG
131 GCTGCCACAACCCTCAATCAAGCTTGA
* * *
27971821 GCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-GGGCGCTCAG
* * * * *
27971886 CCGGTCAGAGAGGCAGAATGCGCAAG-CTGGGGATCGGCCCA-GTCCCCC-CTGCGTGCTGTCGA
65 CCAGTCAGAAAGGCAGAAT-CACAAGTC-AGGGATC-GCCCAGGTCCCCCTCTACGTGCTGTCGA
* * * * *
27971948 TCCTGCTGTCGCAACCCTCAGTCCAATC-TGA
127 TCCCGCTGCCACAACCCTCAAT-CAAGCTTGA
*
27971979 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
27972007 TTAGACTAGG
Statistics
Matches: 155, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
157 50 0.32
158 80 0.52
159 20 0.13
160 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCGCTCAGC
CAGTCAGAAAGGCAGAATCACAAGTCAGGGATCGCCCAGGTCCCCCTCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCAATCAAGCTTGA
Found at i:27972021 original size:26 final size:26
Alignment explanation
Indices: 27971980--27972030 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27971970 CCAATCTGAT
27971980 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27972006 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
27972031 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27973070 original size:26 final size:26
Alignment explanation
Indices: 27973034--27973086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27973024 CCGGTCTGAT
27973034 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27973060 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27973086 C
1 C
27973087 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27973795 original size:26 final size:26
Alignment explanation
Indices: 27973757--27973809 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27973747 GGCTCAAACT
27973757 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27973783 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27973809 C
1 C
27973810 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27974024 original size:723 final size:724
Alignment explanation
Indices: 27973033--27974543 Score: 2904
Period size: 724 Copynumber: 2.1 Consensus size: 724
27973023 TCCGGTCTGA
* *
27973033 TCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAAC
*
27973097 CCATGGAACGAGCGTGCGGACGCTCAGTCGACCAGAGAGGCAGGATGCACAAGTCGGGGATCGAA
65 CCATGGAACGAGCGTGCGGACACTCAGTCGACCAGAGAGGCAGGATGCACAAGTCGGGGATCGAA
27973162 TGGGTGGTAGGTGGGTTCAAGCACATCTTCAAATTTCTATCATGCCAATGCCATTTTTATGGCTT
130 TGGGTGGTAGGTGGGTTCAAGCACATCTTCAAATTTCTATCATGCCAATGCCATTTTTATGGCTT
*
27973227 GTAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTGT
195 GTAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTGT
27973292 ATTTTGCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTT
260 ATTTTGCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTT
*
27973357 CGTCCCCAAA-TTTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGC-CAAAAAACATTCAGCT
325 CGTCCCCAAATTTTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATACAC-AAAAACATTCAGCT
27973420 AAAAACTCGAAGGGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTA
389 AAAAACTCGAAGGGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTA
27973485 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
454 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
27973550 TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTA
519 TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTA
27973615 AA-CCCCCCGGCCCCCCCAATCATCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGTGATGCT
584 AACCCCCCCGGCCCCCCCAATCATCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGTGATGCT
27973679 CCTGTGATGGTGCCTTGGGCAAAAAAAATGTGGCACCAGCACATGCCCGAGCGTAGCATGTGCAC
649 CCTGTGATGGTGCCTTGGGC-AAAAAAATGTGGCACCAGCACATGCCCGAGCGTAGCATGTGCAC
27973744 CGTGGCTCAAAC
713 CGTGGCTCAAAC
27973756 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACC
27973821 CATGGAACGAGCGTGCGGACACTCAGTCGACCAGAGAGGCAGGATGCACAAGTCGGGGATCGAAT
66 CATGGAACGAGCGTGCGGACACTCAGTCGACCAGAGAGGCAGGATGCACAAGTCGGGGATCGAAT
27973886 GGGTGGTAGGTGGGTTCAAGCACATCTTCAAATTTCTATCATGCCAATGCCATTTTTATGGCTTG
131 GGGTGGTAGGTGGGTTCAAGCACATCTTCAAATTTCTATCATGCCAATGCCATTTTTATGGCTTG
27973951 TAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTGTA
196 TAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTGTA
27974016 TTTTGCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTC
261 TTTTGCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTC
27974081 GTCCCCAAATTTTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATACACAAAAACATTCAGCTAA
326 GTCCCCAAATTTTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATACACAAAAACATTCAGCTAA
27974146 AAACTCGAAGGGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
391 AAACTCGAAGGGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
27974211 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
456 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
27974276 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAAA
521 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAAA
27974341 CCCCCCCGGCCCCCCCAATCATCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGTGATGCTCC
586 CCCCCCCGGCCCCCCCAATCATCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGTGATGCTCC
27974406 TGTGATGGTGCCTTGGGCAAAAAAATGTGGCACCAGCACATGCCCGAGCGTAGCATGTGCACCGT
651 TGTGATGGTGCCTTGGGCAAAAAAATGTGGCACCAGCACATGCCCGAGCGTAGCATGTGCACCGT
27974471 GGCTCAAAC
716 GGCTCAAAC
* *
27974480 TCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAAC
27974544 GCACGAAATG
Statistics
Matches: 777, Mismatches: 7, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
723 328 0.42
724 366 0.47
725 83 0.11
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (724 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACC
CATGGAACGAGCGTGCGGACACTCAGTCGACCAGAGAGGCAGGATGCACAAGTCGGGGATCGAAT
GGGTGGTAGGTGGGTTCAAGCACATCTTCAAATTTCTATCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTGTA
TTTTGCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTC
GTCCCCAAATTTTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATACACAAAAACATTCAGCTAA
AAACTCGAAGGGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAAA
CCCCCCCGGCCCCCCCAATCATCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGGTGATGCTCC
TGTGATGGTGCCTTGGGCAAAAAAATGTGGCACCAGCACATGCCCGAGCGTAGCATGTGCACCGT
GGCTCAAAC
Found at i:27974519 original size:26 final size:26
Alignment explanation
Indices: 27974481--27974531 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27974471 GGCTCAAACT
27974481 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
27974507 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
27974532 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:27974958 original size:159 final size:158
Alignment explanation
Indices: 27974556--27975065 Score: 485
Period size: 157 Copynumber: 3.2 Consensus size: 158
27974546 ACGAAATGAG
* * ** * * ** *
27974556 CAAGCCGGGGATCGGCTCGGTCCCCCTCTGTGTGCTGCCGATCTCGCTGCCACAACCCTCGGTCT
1 CAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTATCGATCCCACTTTCACAACCCTCGGTCC
** *
27974621 GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCGTACGGG
66 GGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATACGGG
27974686 CGCTAACCGGCC-GAAGAGGCAAAATGCA
131 CGCTAACCGGCCAG-AGAGGCAAAATGCA
* * * * * * * * ** * *
27974714 TAAGCCGAGGACCGACCCGGT-CCCCTCTGCGTGCTGTCTAT-CCTGTTGTCGCAACCCTCGATC
1 CAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTATCGATCCCACTT-TCACAACCCTCGGTC
** * ** * * *
27974777 CGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTGAACCCATTAAACGAGCATTC
65 CGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATAC
* *
27974840 GGGCGCTAAGCCAGCCAGAGAGGCATAATGCA
128 GGGCGCTAA-CCGGCCAGAGAGGCAAAATGCA
* * *
27974872 CAAGCTGGGGATTGGCTCGATCCCCCTCTGCGTGCTATCGGTCCCACTTTCACAACCCTCGGTCC
1 CAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTATCGATCCCACTTTCACAACCCTCGGTCC
* * * *
27974937 GGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAATGGGCATGCGGG
66 GGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATACGGG
* * * * *
27975002 TGCTCATCTGGCCAGAG-GGTAGAATGCA
131 CGCT-AACCGGCCAGAGAGGCAAAATGCA
* *
27975030 CAAGCTGGGGATCGGCTCAATCCCCC-CTGCGTGCTA
1 CAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTA
27975066 CCAATCCTAC
Statistics
Matches: 280, Mismatches: 62, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 95 0.34
158 82 0.29
159 94 0.34
160 6 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTATCGATCCCACTTTCACAACCCTCGGTCC
GGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATACGGG
CGCTAACCGGCCAGAGAGGCAAAATGCA
Found at i:27975143 original size:26 final size:26
Alignment explanation
Indices: 27975114--27975166 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27975104 CCGGTCTGAT
*
27975114 CTTAGAC-TGGGAATTAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
27975140 CTTAGACATGGAATAAACTTCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
27975166 C
1 C
27975167 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:27975635 original size:26 final size:26
Alignment explanation
Indices: 27975598--27975657 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
27975588 CCTCAGTCCG
27975598 ATCTG-AT-CTTAGACTGGGAATGAA
1 ATCTGTATGCTTAGACTGGGAATGAA
*
27975622 ATCTGTATGCTTAGACTGGGGATGAA
1 ATCTGTATGCTTAGACTGGGAATGAA
* *
27975648 CTCCGTATGC
1 ATCTGTATGC
27975658 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (26 bp):
ATCTGTATGCTTAGACTGGGAATGAA
Found at i:27975956 original size:170 final size:170
Alignment explanation
Indices: 27975630--27975997 Score: 393
Period size: 170 Copynumber: 2.2 Consensus size: 170
27975620 AAATCTGTAT
* * * *
27975630 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGCACTCAAC
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGCACTCAAC
* * * * **
27975695 CGGCTGAAAACGCATAATGCGCAAGCCAGGGATTAGCCCGATCCCCCTTTACGTACTGTCGATCT
66 CGGCTGAAAACGCAGAATGCGCAAGCCAAGGATCAGCCAGATCCCCCTCCACGTACTGTCGATCT
* * *
27975760 CGCTGTCGGTCTTGCTGCCACAACCCTCGGTCCGGTTGGG
131 CGCTATCGGTCCTGCTACCACAACCCTCGGTCCGGTTGGG
* **
27975800 GCTTAGACAT-GGAATGAAGTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTAC-GGCACTCA
* * * * * *
27975864 GCC-GATCGAAAACGTAGAATGCGCAAGCCAAGGATCGGCCAGATCCCCC-CCGCGTGCTGTCGA
64 ACCGGCT-GAAAACGCAGAATGCGCAAGCCAAGGATCAGCCAGATCCCCCTCCACGTACTGTCGA
* * * ** * *
27975927 TC-CTGCTATTGGTCCTGCTACCGCAACCCTCGATCTAGTTCGA
128 TCTC-GCTATCGGTCCTGCTACCACAACCCTCGGTCCGGTTGGG
* *
27975970 TCTTAGACTGGGAATGAACTTCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
27975998 TTAGACATGG
Statistics
Matches: 161, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
169 2 0.01
170 112 0.70
171 47 0.29
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGCACTCAAC
CGGCTGAAAACGCAGAATGCGCAAGCCAAGGATCAGCCAGATCCCCCTCCACGTACTGTCGATCT
CGCTATCGGTCCTGCTACCACAACCCTCGGTCCGGTTGGG
Found at i:27976020 original size:26 final size:26
Alignment explanation
Indices: 27975971--27976022 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27975961 CTAGTTCGAT
**
27975971 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
27975997 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
27976023 TCGAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:27976171 original size:26 final size:26
Alignment explanation
Indices: 27976130--27976182 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27976120 CCGATCCAAT
27976130 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
27976156 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
27976182 C
1 C
27976183 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27976901 original size:26 final size:26
Alignment explanation
Indices: 27976863--27976915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27976853 GGCTCAAACT
27976863 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27976889 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27976915 C
1 C
27976916 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27977817 original size:159 final size:159
Alignment explanation
Indices: 27977601--27977999 Score: 457
Period size: 158 Copynumber: 2.5 Consensus size: 159
27977591 CCGGTCCAAT
* * * * * * * *
27977601 CTTAGAC-TGGGAATGAACTCCGTTTGCCTACGTCAACCCACGAAAC-GAACGTTCGGGTGTTGA
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGA-GTGCGGGTGCTCA
* * * * * *
27977664 GCCGGTCGGAGAGGCATAACGCGCAAGAT-GGGGATTCGCTCGA-TCCCCCTCTGCATGCTACCG
64 GCCGGCCGGAGAGGCAGAACACGCAAG-TCAGGGATT-GCTCCAGTCCCCCTCTGCATACTACCG
* * **
27977727 GTCTCGCTGCCACAACCCTCGGTCCAGCTAGGG
127 GTCCCGCTACCACAACCCTCAATCCAGCTAGGG
27977760 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG-
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAGC
* * * * *
27977824 CGGCCGGAGAGGCAGAATACGCAAGTCAGGGATTGGTCCAGTCCCCCTCTGCGTACTGCTGGTCC
66 CGGCCGGAGAGGCAGAACACGCAAGTCAGGGATTGCTCCAGTCCCCCTCTGCATACTACCGGTCC
* *
27977889 CGCTACCACAACCCTCAATCCGGCTGGGG
131 CGCTACCACAACCCTCAATCCAGCTAGGG
* * * *
27977918 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAATGGGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAGC
*
27977983 CGGCCGGAGAGGTAGAA
66 CGGCCGGAGAGGCAGAA
27978000 TGCGCAAGCC
Statistics
Matches: 205, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
157 5 0.02
158 130 0.63
159 67 0.33
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAGC
CGGCCGGAGAGGCAGAACACGCAAGTCAGGGATTGCTCCAGTCCCCCTCTGCATACTACCGGTCC
CGCTACCACAACCCTCAATCCAGCTAGGG
Found at i:27977919 original size:158 final size:159
Alignment explanation
Indices: 27977441--27978007 Score: 542
Period size: 159 Copynumber: 3.6 Consensus size: 159
27977431 AACTCCATAT
* * * * * *
27977441 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGGAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG
* * * ** *
27977506 CAGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCGG-CCCGAT-CCCCTCCTGCGTGCTG-TCG
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGTCCAG-TCCCCCT-CTGCGTGCTGCT-G
* * ** * *
27977568 ATCCAAG-TGCTGCAACCCTCGGTCCGGTCCA-A
128 GTCC-CGCTGCCACAACCCTCGGTCCGG-CTAGG
* * * * * * * * *
27977600 TCTTAGAC-TGGGAATGAACTCCGTTTGCCTACGTCAACCCACGAAAC-GAACGTTCGGGTGTTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGA-GTGCGGGTGCTC
* * * * * * * * *
27977663 AGCCGGTCGGAGAGGCATAACGCGCAAGAT-GGGGATTCGCTCGA-TCCCCCTCTGCATGCTACC
64 AGCCGGCCGGAGAGGCAGAATGCGCAAG-TCAGGGATT-GGTCCAGTCCCCCTCTGCGTGCTGCT
* *
27977726 GGTCTCGCTGCCACAACCCTCGGTCCAGCTAGG
127 GGTCCCGCTGCCACAACCCTCGGTCCGGCTAGG
27977759 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG
* *
27977824 -CGGCCGGAGAGGCAGAATACGCAAGTCAGGGATTGGTCCAGTCCCCCTCTGCGTACTGCTGGTC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGTCCAGTCCCCCTCTGCGTGCTGCTGGTC
* ** *
27977888 CCGCTACCACAACCCTCAATCCGGCTGGG
131 CCGCTGCCACAACCCTCGGTCCGGCTAGG
* * * *
27977917 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAATGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG
*
27977982 CCGGCCGGAGAGGTAGAATGCGCAAG
66 CCGGCCGGAGAGGCAGAATGCGCAAG
27978008 CCGAGGATCG
Statistics
Matches: 326, Mismatches: 68, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 134 0.41
159 177 0.54
160 9 0.03
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGTCCAGTCCCCCTCTGCGTGCTGCTGGTC
CCGCTGCCACAACCCTCGGTCCGGCTAGG
Found at i:27978102 original size:157 final size:158
Alignment explanation
Indices: 27977441--27978104 Score: 390
Period size: 159 Copynumber: 4.2 Consensus size: 158
27977431 AACTCCATAT
* * * ** * * *
27977441 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGGAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAACGGGAGTGCGGGTGCTCAG
* * * * * *
27977506 CAGGCCAGAGAGGCAGAATGCGCAAGCCAGGGA-CCGGCCCGAT-CCCCTCCTGCGTGCTG-TCG
66 C-GGCCGGAGAGGCAGAATACGCAAGCCAGGGATTCGACCAG-TCCCCCT-CTGCGTACTGCT-G
* * ** ** * *
27977568 ATCCAAG-TGCTGCAACCCTCGGTCCGGTCCA-A
127 ATCC-CGCTACCACAACCCTCAATCC-GACTAGA
* * * * * * * * * * *
27977600 TCTTAGAC-TGGGAATGAACTCCGTTTGCCTACGTCAACCCACGAAAC-GAACGTTCGGGTGTTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCTTAAGCCAACCCACAAAACGGGA-GTGCGGGTGCTC
* * ** *** * * * *
27977663 AGCCGGTCGGAGAGGCATAACGCGCAAGATGGGGATTCG-CTC-GATCCCCCTCTGCATGCTACC
64 AG-CGGCCGGAGAGGCAGAATACGCAAGCCAGGGATTCGAC-CAG-TCCCCCTCTGCGTACTGCT
* * * ** *
27977726 GGTCTCGCTGCCACAACCCTCGGTCC-AGCTAGG
126 GATCCCGCTACCACAACCCTCAATCCGA-CTAGA
* *
27977759 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAACGGGAGTGCGGGTGCTCAG
* * * *
27977824 CGGCCGGAGAGGCAGAATACGCAAGTCAGGGATTGGTCCAGTCCCCCTCTGCGTACTGCTGGTCC
66 CGGCCGGAGAGGCAGAATACGCAAGCCAGGGATTCGACCAGTCCCCCTCTGCGTACTGCTGATCC
* * *
27977889 CGCTACCACAACCCTCAATCCGGCTGGG
131 CGCTACCACAACCCTCAATCCGACTAGA
* *
27977917 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAATGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAACGGGAGTGCGGGTGCTCAG
* * *
27977982 CCGGCCGGAGAGGTAGAATGCGCAAGCC-GAGGA-TCGACCTGGTCCCCCTGCGTGC-TA-T-C-
66 -CGGCCGGAGAGGCAGAATACGCAAGCCAG-GGATTCGACC-AGTCCCCCT-C-TGCGTACTGCT
* * * * *
27978041 GATCCTGCTACCGCGACCCTCAGTCCGATTAGA
126 GATCCCGCTACCACAACCCTCAATCCGACTAGA
* * **
27978074 TCTTAGA-TTGGGAATGAACTCTGTATGCTTA
1 GCTTAGACAT-GGAATGAACTCCCTATGCTTA
27978105 GACTGGGGAT
Statistics
Matches: 402, Mismatches: 82, Indels: 44
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 49 0.12
158 141 0.35
159 193 0.48
160 15 0.04
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAACGGGAGTGCGGGTGCTCAG
CGGCCGGAGAGGCAGAATACGCAAGCCAGGGATTCGACCAGTCCCCCTCTGCGTACTGCTGATCC
CGCTACCACAACCCTCAATCCGACTAGA
Found at i:27978111 original size:26 final size:26
Alignment explanation
Indices: 27978075--27978127 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27978065 CCGATTAGAT
* *
27978075 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27978101 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27978127 C
1 C
27978128 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27978740 original size:869 final size:870
Alignment explanation
Indices: 27976888--27979007 Score: 2440
Period size: 869 Copynumber: 2.4 Consensus size: 870
27976878 AACTCCGTAT
* * *
27976888 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
27976952 GCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATTCCCCTCTGTGTGCTGCCAGT
65 GCCGGTCGGAGAGCTAGAATGCGCAAGCCGAGGATCGGCCAGATCCCCCTCTGCGTGCTGCTAGT
* * * *
27977017 CCCATTGCCCCAACCCTTTGTCCGGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCC
130 CCCGTTGCCACAACCC-TAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* ** * *
27977082 AACCCACGAAATGGGTGTGCGGGCGCTCAGCCGGCTGGGGAGGTAGAAAACGCAAGCTGGGGATC
194 AACCCACGAAATGGGTGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGCCGAGGATC
* * *
27977147 GACCCGGTCCCCCCTGCATGCTGA-CGATCCTGCTGCCGCAACCCTCGGTCCGATTAGATCTTAG
259 GACCTGGTCCCCCCTGCGTGCT-ATCGATCCTGCTACCGCAACCCTCGGTCCGATTAGATCTTAG
* * * * * * **
27977211 ATTGGGAATGAACTCCATGTGCTTAGACTGGGGAAGAACTTTGTATGCCTAACTCAGCCCACGTA
323 ATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACACACAAA
* * * ** * * * * *
27977276 ACGACCGTGCGGGTGCTCAACCGGCCAGAGAGGTTGGCCAAAGAGGCAGAATGCGCAAGCTGGGG
388 ACGACCGTACGGGCGCTCAACCGACCAGAGAGGCCGACCAAAGAGGCAAAATGCACAAGCCGAGG
* * *
27977341 ATCAGCCCGATCCCGCCCTGCGTGCTATCGATCCTACTACTGGTCCTACTGTCGCAACCCTCGAT
453 ATCAGCCAGATCCCGCCCTGCGTGCTAGCGATCCTACTACTGGTCCTACTGTCACAACCCTCGAT
*
27977406 CTGGTCCGATCTCAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCT
518 CTGGTCCGATCTCAGACTAGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCCT
* * **
27977471 AATCCAACCCACGGAACGAGCGTGCGGGTGCTCAACAGGCCAGAGAGGCAGAATGCGCAAGCCAG
583 AAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACAGGCCAGAGAGGCAGAATGCGCAAGCCAG
* * * * * *
27977536 GGACCGGCCCGATCCCCTCCTGCGTGCTGTCGATCCAAGTGCTGCAACCCTCGGTCCGGTCCAAT
648 GGACCGACCCGATCCCATCCTACGTGCTATCGATCCAAGTACCGCAACCCTCGGTCCGGTCCAAT
* * * ** *
27977601 CTTAGACTGGGAATGAACTCCGTTTGCCTACGTCAACCCACGAAACGAACGTTCGGGTGTTGAGC
713 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGCCGCTGAGC
* * * * *
27977666 CGGTCGGAGAGGCATAACGCGCAAGATGGGGATTCGCTCGATCCCCCTCTGCATGCTACCGGTCT
778 CGATCGAAGAGGCATAACGCGCAAGATGAGGATTCGCACGATCCCCCTCTGCATGCTACCAGTCT
*
27977731 CGCTGCCACAACCCTCGGTCCAGCTAGG
843 CGCTGCCACAACCCTCGATCCAGCTAGG
** * * *
27977759 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
27977824 -CGGCCGGAGAGGC-AGAATACGCAAGTC-AGGGATTGGTCCAG-TCCCCCTCTGCGTACTGCTG
66 CCGGTCGGAGA-GCTAGAATGCGCAAGCCGA-GGATCGG-CCAGATCCCCCTCTGCGTGCTGCTA
* * * * *
27977885 GTCCCGCTACCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAG
128 GTCCCGTTGCCACAACCCT-AGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * *
27977950 CCAACCCACAAAATGGGTGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGA
192 CCAACCCACGAAATGGGTGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGCCGAGGA
* *
27978015 TCGACCTGGT-CCCCCTGCGTGCTATCGATCCTGCTACCGCGACCCTCAGTCCGATTAGATCTTA
257 TCGACCTGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATTAGATCTTA
** *
27978079 GATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACACAA
322 GATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACACACAA
* * * * * * ** *
27978144 AATGAGCGTACGGGCGCTCAGCCGACCGGATAGGCCGATCGGAGAGGCAAAATGCACGAGCCGAG
387 AACGACCGTACGGGCGCTCAACCGACCAGAGAGGCCGACCAAAGAGGCAAAATGCACAAGCCGAG
* * * *
27978209 GATC-GACCTAGTTGCC-CCTTGCGTGCT-GCAGATCCTACTGCTGGTCCTACTG-CTACAACCC
452 GATCAG-CC-AGATCCCGCCCTGCGTGCTAGC-GATCCTACTACTGGTCCTACTGTC-ACAACCC
* * * * *
27978270 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACATGGAATGAACTCTGTA
513 TCGATCTGGTCCGATCTCAGACTAGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTA
* * * * *
27978335 TGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGTCGGAGAGGCAG-ATGCGCAA
578 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACAGGCCAGAGAGGCAGAATGCGCAA
* * * * * *
27978399 GTCGGGGACCGACCCGGTCCCATCCTACGTGCTATCGATCC-TGCTACCGCAACCCTTGGTTCGG
643 GCCAGGGACCGACCCGATCCCATCCTACGTGCTATCGATCCAAG-TACCGCAACCCTCGGTCCGG
** * * * *
27978463 TCTGATCTTAGGCTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTTGGCCG
707 TCCAATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGCCG
* * ** * * ** *
27978528 CTGAGTCGATCGAAGAGGCATAATGCGTGAG-TCGAGGA-TCGACACGGTCCCCTTCTGTGTTCT
772 CTGAGCCGATCGAAGAGGCATAACGCGCAAGAT-GAGGATTCG-CACGATCCCCCTCTGCATGCT
* * * * * *
27978591 GCCAGTC-CTGTTGCCATAACCCTCGATCCGGTTGGG
835 ACCAGTCTC-GCTGCCACAACCCTCGATCCAGCTAGG
* *
27978627 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACGCATGAAACGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
27978692 CCGATCAGAGAGCTAGAATGCGAAAGCCGAGGATCGGCCTGATCCCCCTCTACATGCTGCTAGTC
66 CCGGTCGGAGAGCTAGAATGCGCAAGCCGAGGATCGGCCAGATCCCCCTCTGCGTGCTGCTAGTC
* * * * *
27978757 CCGTTGCCACAACCCTAGGTCCGATTGGGGCTTAGACTTGGAATGAACTCCGTATTCCTAAGCGA
131 CCGTTGCCACAACCCTA-GTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
27978822 ACCCATGAAACGGGCGTGCGGACGCTCAGTCGACTGGAGAGGCAGAATGCGCAAGCC-AGGGATC
195 ACCCACGAAATGGGTGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGCCGA-GGATC
* * * * * * * *
27978886 GA-CTCGGTCCCCCCTGCGTGCTGTTGATCTTGCTATCGTAACCCTCGGTTCGGTTCGATCTTAG
259 GACCT-GGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATTAGATCTTAG
27978950 ATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAAC
323 ATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAAC
27979008 CCAAGAAACA
Statistics
Matches: 1035, Mismatches: 192, Indels: 45
0.81 0.15 0.04
Matches are distributed among these distances:
867 6 0.01
868 252 0.24
869 451 0.44
870 266 0.26
871 60 0.06
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (870 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGCTAGAATGCGCAAGCCGAGGATCGGCCAGATCCCCCTCTGCGTGCTGCTAGTC
CCGTTGCCACAACCCTAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAATGGGTGTGCGGGCGCTCAGCCGGCTGGAGAGGTAGAATGCGCAAGCCGAGGATCGA
CCTGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATTAGATCTTAGATT
GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACACACAAAACG
ACCGTACGGGCGCTCAACCGACCAGAGAGGCCGACCAAAGAGGCAAAATGCACAAGCCGAGGATC
AGCCAGATCCCGCCCTGCGTGCTAGCGATCCTACTACTGGTCCTACTGTCACAACCCTCGATCTG
GTCCGATCTCAGACTAGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAACGAGCGTGCGGGCACTCAACAGGCCAGAGAGGCAGAATGCGCAAGCCAGGGA
CCGACCCGATCCCATCCTACGTGCTATCGATCCAAGTACCGCAACCCTCGGTCCGGTCCAATCTT
AGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGCCGCTGAGCCGA
TCGAAGAGGCATAACGCGCAAGATGAGGATTCGCACGATCCCCCTCTGCATGCTACCAGTCTCGC
TGCCACAACCCTCGATCCAGCTAGG
Found at i:27978862 original size:159 final size:159
Alignment explanation
Indices: 27978589--27978886 Score: 386
Period size: 159 Copynumber: 1.9 Consensus size: 159
27978579 CTTCTGTGTT
* * * * *
27978589 CTGCCAGTCCTGTTGCCATAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATG
1 CTGCCAGTCCCGTTGCCACAACCCTAGATCCGATTGGGGCTTAGACATGGAATGAACTCCGTATG
* ** *
27978654 CCTAAGCCAACGCATGAAACGAGCGTGCGGGTGCTTAGCCGATCAGAGA-GCTAGAATGCGAAAG
66 CCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGATCAGAGAGGC-AGAATGCGAAAG
27978718 CC-GAGGATCGGCCTGATCCCCCTCTACATG
130 CCAG-GGATCGGCCTGATCCCCCTCTACATG
* * * *
27978748 CTGCTAGTCCCGTTGCCACAACCCTAGGTCCGATTGGGGCTTAGACTTGGAATGAACTCCGTATT
1 CTGCCAGTCCCGTTGCCACAACCCTAGATCCGATTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * * *
27978813 CCTAAGCGAACCCATGAAACGGGCGTGCGGACGCTCAGTCGA-CTGGAGAGGCAGAATGCGCAAG
66 CCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGATC-AGAGAGGCAGAATGCGAAAG
27978877 CCAGGGATCG
130 CCAGGGATCG
27978887 ACTCGGTCCC
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
158 1 0.01
159 114 0.97
160 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (159 bp):
CTGCCAGTCCCGTTGCCACAACCCTAGATCCGATTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGATCAGAGAGGCAGAATGCGAAAGC
CAGGGATCGGCCTGATCCCCCTCTACATG
Found at i:27978898 original size:159 final size:159
Alignment explanation
Indices: 27978478--27978888 Score: 384
Period size: 159 Copynumber: 2.6 Consensus size: 159
27978468 TCTTAGGCTG
* * * * ** * * *
27978478 GGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTTGGCCGCTGAGTCGATC-GAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGATCAG-A
* ** * * * *** * *
27978542 GAGGC-ATAATGCGTGAGTCGAGGATCGACAC-GGTCCCCTTCTGTGTTCTGCCAGTCCTGTTGC
65 GA-GCTAGAATGCGAAAGCCGAGGATCGAC-CTGATCCCCCTCTACATGCTGCCAGTCCCGTTGC
* * *
27978605 CATAACCCTCGATCCGGTTGGGGCTTAGACAT
128 CACAACCCTAGATCCGATTGGGGCTTAGACAT
* * ** *
27978637 GGAATGAACTCTGTATGCCTAAGCCAACGCATGAAACGAGCGTGCGGGTGCTTAGCCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGATCAGAG
* *
27978702 AGCTAGAATGCGAAAGCCGAGGATCGGCCTGATCCCCCTCTACATGCTGCTAGTCCCGTTGCCAC
66 AGCTAGAATGCGAAAGCCGAGGATCGACCTGATCCCCCTCTACATGCTGCCAGTCCCGTTGCCAC
* *
27978767 AACCCTAGGTCCGATTGGGGCTTAGACTT
131 AACCCTAGATCCGATTGGGGCTTAGACAT
* * * * *
27978796 GGAATGAACTCCGTATTCCTAAGCGAACCCATGAAACGGGCGTGCGGACGCTCAGTCGA-CTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGATC-AGA
*
27978860 GAGGC-AGAATGCGCAAGCC-AGGGATCGAC
65 GA-GCTAGAATGCGAAAGCCGA-GGATCGAC
27978889 TCGGTCCCCC
Statistics
Matches: 204, Mismatches: 42, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 5 0.02
159 196 0.96
160 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCCGATCAGAG
AGCTAGAATGCGAAAGCCGAGGATCGACCTGATCCCCCTCTACATGCTGCCAGTCCCGTTGCCAC
AACCCTAGATCCGATTGGGGCTTAGACAT
Found at i:27979336 original size:26 final size:26
Alignment explanation
Indices: 27979300--27979352 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27979290 CCGATCCAAT
*
27979300 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27979326 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27979352 C
1 C
27979353 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27980060 original size:26 final size:26
Alignment explanation
Indices: 27980022--27980074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27980012 GGCTCAAAAT
27980022 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27980048 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27980074 C
1 C
27980075 CGAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27980661 original size:342 final size:344
Alignment explanation
Indices: 27980020--27980674 Score: 766
Period size: 342 Copynumber: 1.9 Consensus size: 344
27980010 GTGGCTCAAA
*
27980020 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCGAAACCAAC
1 ATCTTAGACTGGGAATGAACTCCACATGCTTAGACATGGAATGAACTCCGTATGCCGAAACCAAC
* * * * * *
27980085 CCATAAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGTTGGGGATTAAC
66 CCACAAAACGAGCGTACAGGCACTCAGCCGACCGAAGAGGCAGAATACGCAAATCGAGGATTAAC
* * ** ** * *
27980150 CTGGTCCCCCTCTGTGTGCTGTTGGTCCCACTCCCATAACTTTCTGTCTGGCTGGGGCTTAGACA
131 CCGGTCCCCCTCTGTATGCTGCCGGTCCCACTCCCATAACCCTCTGTCCGGCTGGGACTTAGACA
* * * * *
27980215 TGGACTGAACTCCCTATGCCTAAGGCAACCCATGAAACGGGCGCACGGGCGTTCAACCGGCCGGA
196 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGTTCAACCGACCGGA
** * * *
27980280 GAGGTAGAATGTGCAAGCCGAGGATCGGCCTGGTCCCCC-TTGCATGCTGCCGATCCTACTGTCG
261 GAGGTAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTTTGCATGCTGCCGATCCTACTGTCG
27980344 CAACCCTCGATCCGATCCT
326 CAACCCTCGATCCGATCCT
* * * **
27980363 ATCTTAGACTGGGAATGAACTCCGCGTGCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCACATGCTTAGACAT-GGAATGAACTCCGTATGCCGAAACCAA
* * * * * * * *
27980427 CCCACAAAATGAGCGTTC-GGTCACTGAGTCGATCGAAGAGGCATAATGCG-AAATCGAGGATTG
65 CCCACAAAACGAGCGTACAGG-CACTCAGCCGACCGAAGAGGCAGAATACGCAAATCGAGGATTA
* * *
27980490 ACCCGGTCCCCCTCTGTATGCTGCCGGTCCTATTGCCATAACCCTC-GATCCGGCTGGGACTTAG
129 ACCCGGTCCCCCTCTGTATGCTGCCGGTCCCACTCCCATAACCCTCTG-TCCGGCTGGGACTTAG
* * ** *
27980554 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTTGC-TT-AGCCGA
193 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCACGG--GCGTTCAACCGA
* * * *
27980617 TCGGAGAGGTAGAATGCATAAGCCGGGGATCGACCCGATCCCCCTTTGCGTGCTGCCG
256 CCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTTTGCATGCTGCCG
27980675 GTCTCGCTAC
Statistics
Matches: 256, Mismatches: 50, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
341 1 0.00
342 146 0.57
343 107 0.42
344 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (344 bp):
ATCTTAGACTGGGAATGAACTCCACATGCTTAGACATGGAATGAACTCCGTATGCCGAAACCAAC
CCACAAAACGAGCGTACAGGCACTCAGCCGACCGAAGAGGCAGAATACGCAAATCGAGGATTAAC
CCGGTCCCCCTCTGTATGCTGCCGGTCCCACTCCCATAACCCTCTGTCCGGCTGGGACTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGTTCAACCGACCGGA
GAGGTAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTTTGCATGCTGCCGATCCTACTGTCG
CAACCCTCGATCCGATCCT
Found at i:27980723 original size:159 final size:158
Alignment explanation
Indices: 27980400--27980752 Score: 413
Period size: 159 Copynumber: 2.2 Consensus size: 158
27980390 GCTTAGACTA
* * * * *
27980400 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGTCACTGAGTCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCACTGAGCCGATCGAAG
* * * * * * * *
27980465 AGGCATAATGCGAAATCGAGGATTGACCCGGTCCCCCTCTGTATGCTGCCGGTCCTATTGCCATA
66 AGGCAGAATGCGAAACCGAGGATCGACCCGATCCCCCTCTGCATGCTGCCGGTCCTACTACCACA
*
27980530 ACCCTCGATCCGGCTGGGACTTAGACAT
131 ACCCTCGATCCGGCTGGGACCTAGACAT
* ** * *
27980558 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTTGCTTAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCACTGAGCCGATCGAAG
* * * * *
27980623 AGGTAGAATGC-ATAAGCCGGGGATCGACCCGATCCCCCTTTGCGTGCTGCCGGT-CTCGCTACC
66 AGGCAGAATGCGA-AA-CCGAGGATCGACCCGATCCCCCTCTGCATGCTGCCGGTCCT-ACTACC
* *
27980686 ACAACCCTCGATCCGGTTGGGGCCTAGACAT
128 ACAACCCTCGATCCGGCTGGGACCTAGACAT
* *
27980717 GGAATGAACTCCCTATACCTAAGCCAACCCACGAAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
27980753 TGGGTATGTG
Statistics
Matches: 163, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
157 1 0.01
158 68 0.42
159 94 0.58
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCACTGAGCCGATCGAAG
AGGCAGAATGCGAAACCGAGGATCGACCCGATCCCCCTCTGCATGCTGCCGGTCCTACTACCACA
ACCCTCGATCCGGCTGGGACCTAGACAT
Found at i:27980907 original size:26 final size:26
Alignment explanation
Indices: 27980866--27980918 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27980856 CTGGTTCGAT
27980866 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27980892 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
27980918 C
1 C
27980919 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27981100 original size:26 final size:26
Alignment explanation
Indices: 27981062--27981114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27981052 CCTGTCTAAT
27981062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27981088 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27981114 C
1 C
27981115 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27981281 original size:26 final size:26
Alignment explanation
Indices: 27981245--27981297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27981235 TCAGTCCGAT
*
27981245 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27981271 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27981297 C
1 C
27981298 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27982143 original size:26 final size:26
Alignment explanation
Indices: 27982114--27982165 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27982104 TGGTCTGATA
*
27982114 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
27982140 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
27982166 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:27982869 original size:26 final size:26
Alignment explanation
Indices: 27982831--27982883 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27982821 GGCTCAAAAT
*
27982831 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
27982857 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
27982883 C
1 C
27982884 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:27984371 original size:158 final size:157
Alignment explanation
Indices: 27984091--27984688 Score: 572
Period size: 158 Copynumber: 3.8 Consensus size: 157
27984081 TAGACTGGGG
* ** *
27984091 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGCTGAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCGGAGAGG
* * * * * ** *
27984156 CATAATGCGCAAGTCGGGGATCGACCTGGTCCCCTTTGCGTGCTGCCGATCCCGCTGCCACAACC
65 CAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAACC
*
27984221 CTCGGTCCGGCTAGGGCTTAGACATGCA
130 CTCGGTCCGGCTAGGGCTTAGACATGGA
* * * *
27984249 ATTAACTCCCTATGGCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCAGCCAGCCAGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCC-GCCGGAGAG
* * * * * * **
27984313 GCAGAATGCGTAAGTCAAGGATCGGCCCGGTCCCCCCTGCATGCTGTCAATCCTGCTGCTGCAAC
64 GCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAAC
* * **
27984378 CCTCGGTCTGGTCCA-ATCTTAGAC-TGGGA
129 CCTCGGTCCGG-CTAGGGCTTAGACAT-GGA
* * * * * * * * *
27984407 ATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGTGCTGAGCCGACTGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCGGAGAGG
* * * ** * * * *
27984472 CATAATGCGTAAGCCAGGGATTGGCCCAATCTCCCTCTGCGTGCTATTGGTCCCGCTGCCACAAC
65 CAGAATGCGCAAGCCAGGGATCGGCCCGGTC-CCCCCTGCGTGCTGTCGATCCCGCTGCCACAAC
* *
27984537 CCTCGGTCCGACTGGGGCTTAGACATGGA
129 CCTCGGTCCGGCTAGGGCTTAGACATGGA
* * *
27984566 ATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCGGAGAGG
* * * * * * *
27984631 CAGAATGCACAAGCCGGGGATCAGTCCGGTCCCCCTTACGTGCTGTCGATCCTGCTGC
65 CAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTGC
27984689 TGGTCCTGCT
Statistics
Matches: 341, Mismatches: 89, Indels: 20
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 216 0.63
159 120 0.35
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCGGAGAGGC
AGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAACCC
TCGGTCCGGCTAGGGCTTAGACATGGA
Found at i:27984662 original size:317 final size:316
Alignment explanation
Indices: 27984080--27984690 Score: 792
Period size: 317 Copynumber: 1.9 Consensus size: 316
27984070 CTCTGTATGG
* * * **
27984080 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGCTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTACAGGCGCTGAGCC
* * * *** * *
27984145 GACCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCTGGTCCCCTTTGCGTGCTGCCGATCCCG
66 GACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAATCCCCTCTGCGTGCTACCGATCCCG
* * *
27984210 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGCAATTAACTCCCTATGGCTAAGCCAACC
131 CTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACC
* ** * *
27984275 CACGAAACGGACGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGTAAGTCAAGGATCGGCC
196 CACGAAACGGACGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCAAGGATCAGCC
*
27984340 CGGTCCCCCCTGCATGCTGTCAATCCTGCTGCTGCAACCCTCGGTCTGGTCCAATC
261 CGGTCCCCCCTACATGCTGTCAATCCTGCTGCTGCAACCCTCGGTCTGGTCCAATC
* * *
27984396 TTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGTGCTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTACAGGCGCTGAGCC
* * * * ** *
27984461 GACTGAAGAGGCATAATGCGTAAGCCAGGGATTGGCCCAATCTCCCTCTGCGTGCTATTGGTCCC
66 GACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAATC-CCCTCTGCGTGCTACCGATCCC
* * **
27984526 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
130 GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAAC
* * * **
27984591 CCATGAAAC-GAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAG
195 CCACGAAACGGA-CGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCAAGGATCAG
* * * *
27984655 TCCGGTCCCCCTTACGTGCTGTCGATCCTGCTGCTG
259 CCCGGTCCCCCCTACATGCTGTCAATCCTGCTGCTG
27984691 GTCCTGCTAC
Statistics
Matches: 248, Mismatches: 45, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
316 91 0.37
317 157 0.63
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (316 bp):
TTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTACAGGCGCTGAGCC
GACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAATCCCCTCTGCGTGCTACCGATCCCG
CTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGACGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCAAGGATCAGCC
CGGTCCCCCCTACATGCTGTCAATCCTGCTGCTGCAACCCTCGGTCTGGTCCAATC
Found at i:27984988 original size:515 final size:513
Alignment explanation
Indices: 27984236--27985203 Score: 1269
Period size: 515 Copynumber: 1.9 Consensus size: 513
27984226 TCCGGCTAGG
* * * *
27984236 GCTTAGACATGCAATTAACTCCCTATGGCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAG
1 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAA
* * *
27984301 CCAGCCAGAGAGGCAGAATGCGTAAGTCAAGGATCGGCCCGGTCCCCCCTGCATGCTGTCAATCC
66 CCAGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCC
* * ** * * *
27984366 TGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
131 TACTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAA
* * * *
27984431 CCCACAAAATGAGCGTACGGGTGCTGAGCCGACTGAAGAGGCATAATGCGTAAGCCAGGGATTGG
196 CCCACAAAATGAGCGTACGGGCGCTGAGCCGACTGAAGAGGCATAATGCATAAGCCAGGGATCGA
* * * * *
27984496 CCCAATCTCCCTCTGCGTGCTATTGGTCCCG-CTGCCACAACCCTCGGTCC-GACTGGGGCTTAG
261 CCCAATCGCCCTCTACGTGCTATTGGT-CCGACTACCACAACCCTCGGTCCAG-CTAGCGCTTAG
* ** ** *
27984559 ACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCC
324 ACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGGCC
* ** *
27984624 GGAGAGGCAGAATGCACAAGCCGGGGATCAGTCCGGTCCCCCTTACGTGCTGTCGATCCTGCTGC
389 GGAGAGGCAGAATGCACAAGCCGGGGATCAGGCCGGTCCCCCCCACGTGCTGTCAATCCTGCTGC
27984689 TGGTCCTGCTACAGCAACCCCCGATCCGATCCGATCTTAGAATGGGAATGAACTCTGTAT
454 TGGTCCTGCTACAGCAACCCCCGATCCGATCCGATCTTAGAATGGGAATGAACTCTGTAT
* * * *
27984749 GCTTAGACATGGAATGAACTCCATTTGCCTAAGCCAATCCACGAAAC-GAGTGTGGCGGGCGCTC
1 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGA-CGT-GCGGGCGCTC
* * * * *
27984813 AACC-GACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCTGTCCCCTCTTGCGTGCTGTCG
64 AACCAG-CCAGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCC-CCTGCATGCTGTCA
* * * *
27984877 ATCCTACTACCATAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAG
127 ATCCTACTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAG
* * * * * * * *
27984942 TCAACCCACGAAATGATCGTGCGGGCGTTGAGCTGGCTGGAGAGGCATAATGCATAAGCCGGGGA
192 TCAACCCACAAAATGAGCGTACGGGCGCTGAGCCGACTGAAGAGGCATAATGCATAAGCCAGGGA
** *
27985007 TCGACCCGGTCGCCCTCTACGTGCTGTTGGTCCGACTACCACAACCCTCGGTCCAGCTAGCGCTT
257 TCGACCCAATCGCCCTCTACGTGCTATTGGTCCGACTACCACAACCCTCGGTCCAGCTAGCGCTT
*
27985072 AGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAACCGG
322 AGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGG
* ** * * * *
27985137 TCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGGCTGGTCCCCCCCGCGTGCTGTCAATCCTGCT
387 CCGGAGAGGCAGAATGCACAAGCCGGGGATCAGGCCGGTCCCCCCCACGTGCTGTCAATCCTGCT
27985202 GC
452 GC
27985204 CGCCCTCTGT
Statistics
Matches: 384, Mismatches: 65, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
512 2 0.01
513 44 0.11
514 54 0.14
515 283 0.74
516 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (513 bp):
GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAA
CCAGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCC
TACTACCACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAA
CCCACAAAATGAGCGTACGGGCGCTGAGCCGACTGAAGAGGCATAATGCATAAGCCAGGGATCGA
CCCAATCGCCCTCTACGTGCTATTGGTCCGACTACCACAACCCTCGGTCCAGCTAGCGCTTAGAC
ATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGGCCGG
AGAGGCAGAATGCACAAGCCGGGGATCAGGCCGGTCCCCCCCACGTGCTGTCAATCCTGCTGCTG
GTCCTGCTACAGCAACCCCCGATCCGATCCGATCTTAGAATGGGAATGAACTCTGTAT
Found at i:27985164 original size:159 final size:156
Alignment explanation
Indices: 27984749--27985168 Score: 439
Period size: 159 Copynumber: 2.6 Consensus size: 156
27984739 AACTCTGTAT
* * *
27984749 GCTTAGACATGGAATGAACTCCATTTGCCTAAGCCAATCCACGAAACGAGTGTGGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGT-GCGGGCGCTCA
* * * * *
27984814 ACCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCTGTCCCCTCTTGCGTGCTGTCGAT
65 ACCG-GCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTTACGTGCTGTCGAT
* * *
27984879 CCTACTACCATAACCCTCGATCCGGTCC
129 CCGACTACCACAACCCTCGATCCGCTCC
* * * * *
27984907 GATCTTAGA-TTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGATCGTGCGGGCGTT
1 G--CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * ** *
27984971 GAGCTGGCTGGAGAGGCATAATGCATAAGCCGGGGATCGACCCGGTCGCCCTC-TACGTGCTGTT
63 CAACCGGC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC-CCCTCTTACGTGCTGTC
* * *
27985035 GGTCCGACTACCACAACCCTCGGTCCAGCTAGC
126 GATCCGACTACCACAACCCTCGATCC-GCT-CC
* * * * *
27985068 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
27985133 CCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCG
66 CCGG-CGGAGAGGCAGAATGCGCAAGCCGGGGATCG
27985169 GGCTGGTCCC
Statistics
Matches: 209, Mismatches: 44, Indels: 17
0.77 0.16 0.06
Matches are distributed among these distances:
158 2 0.01
159 153 0.73
160 52 0.25
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTTACGTGCTGTCGATCC
GACTACCACAACCCTCGATCCGCTCC
Found at i:27985977 original size:26 final size:26
Alignment explanation
Indices: 27985937--27985989 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27985927 GGCTCAAAAT
27985937 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
27985963 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
27985989 C
1 C
27985990 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:27986306 original size:159 final size:158
Alignment explanation
Indices: 27986130--27986425 Score: 398
Period size: 159 Copynumber: 1.9 Consensus size: 158
27986120 TCTTAGACTG
* * *
27986130 GGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAG
1 GGAATGAACTCTGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCGAAG
* * * *
27986195 AGGCATAATACACAAGCCAGGGATCGGCTCGATCCCCCTCTGCTTGCTGCC-AGTCCCGCTGCCA
66 AGGCAGAATACACAAACCAGGGATCGGCTCAATCCCCC-CTGCGTGCTGCCGA-TCCCGCTGCCA
27986259 CAACCCTCGATCCGACTGGGGCTTAGAGAT
129 CAACCCTCGATCCGACTGGGGCTTAGAGAT
* * * * * * *
27986289 GGAATGAACTC-GCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGGA
1 GGAATGAACTCTG-TATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCGAA
* * *
27986353 GAGGCAGAATACGCAAACCAGGGATCGGCTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCAC
65 GAGGCAGAATACACAAACCAGGGATCGGCTCAATCCCCCCTGCGTGCTGCCGATCCCGCTGCCAC
27986418 AACCCTCG
130 AACCCTCG
27986426 GTCTGGTTTG
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
158 30 0.25
159 88 0.75
ACGTcount: A:0.25, C:0.33, G:0.27, T:0.16
Consensus pattern (158 bp):
GGAATGAACTCTGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCGAAG
AGGCAGAATACACAAACCAGGGATCGGCTCAATCCCCCCTGCGTGCTGCCGATCCCGCTGCCACA
ACCCTCGATCCGACTGGGGCTTAGAGAT
Found at i:27986903 original size:157 final size:154
Alignment explanation
Indices: 27986616--27987148 Score: 432
Period size: 159 Copynumber: 3.4 Consensus size: 154
27986606 TTGGTACCGG
* * * * ** *
27986616 TCCTGCTACCACAACCCTCGGTCC-GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGATCCAGTCTCGATCTTAGAC-TGGAATGAACTCTGTATGCCTAAG
* * * * *
27986680 CCAAACCACAAATCGAGCGT-TCGGGCACTCAACCGACCGAAGAGGTAGAATGCGCAAGCC-GAG
65 CCAACCCACAAAT-GAGCGTGT-GGGCGCTCAACCG-TCGAAGAGGCAGAATACGCAAGCCAG-G
* *
27986743 GATCGGCTCGACCCCCCTACGTGCTGTCGA
126 GATCGACTCGACCCCCCTGCGTGCTG-CGA
* * * *
27986773 TCCTGCTACCGCAAGCCTCGATCCAGTCT-GATCTTAGACTGGGAATGAACTCTGTATGCATAAG
1 TCCTGCTGCCACAACCCTCGATCCAGTCTCGATCTTAGACT-GGAATGAACTCTGTATGCCTAAG
* * * *
27986837 TCAACCCACAAAATGAGCGTGTGGGCGCTGAGCCGTCTGAAGAGGCATAATACGCAAGCCAGGGA
65 CCAACCCAC-AAATGAGCGTGTGGGCGCTCAACCGTC-GAAGAGGCAGAATACGCAAGCCAGGGA
* * * * *
27986902 TCGACTCGGTCCCCTTCTGCTTACTGCCA
128 TCGACTC-GACCCC-CCTGCGTGCTGCGA
* * * * * * ** *
27986931 GTCCCGTTGCCACAACCCTCGGT-CTGACTGGGGCTTAGAGATGGAATGAACTC-GCTATGCCTA
1 -TCCTGCTGCCACAACCCTCGATCCAGTCTCGATCTTAGA-CTGGAATGAACTCTG-TATGCCTA
* * *
27986994 AGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATACGCAAGCCAGG
63 AGCCAACCCAC-AAATGAGCGTGTGGGCGCTCAACC-GTCGAAGAGGCAGAATACGCAAGCCAGG
* *
27987059 GATCGACTCAATCCCCCCTGCGTGTTGCCGA
126 GATCGACTCGA-CCCCCCTGCGTGCTG-CGA
* ** * *
27987090 TCCTGCTGCCACGACCCTCGATCTGGT-TCGATCTTATATTGGGAATGAACTCTGTATGC
1 TCCTGCTGCCACAACCCTCGATCCAGTCTCGATCTTAGACT-GGAATGAACTCTGTATGC
27987149 TTTGACTGAG
Statistics
Matches: 295, Mismatches: 63, Indels: 35
0.75 0.16 0.09
Matches are distributed among these distances:
156 2 0.01
157 102 0.35
158 69 0.23
159 118 0.40
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (154 bp):
TCCTGCTGCCACAACCCTCGATCCAGTCTCGATCTTAGACTGGAATGAACTCTGTATGCCTAAGC
CAACCCACAAATGAGCGTGTGGGCGCTCAACCGTCGAAGAGGCAGAATACGCAAGCCAGGGATCG
ACTCGACCCCCCTGCGTGCTGCGA
Found at i:27987397 original size:684 final size:681
Alignment explanation
Indices: 27985962--27987606 Score: 2446
Period size: 684 Copynumber: 2.4 Consensus size: 681
27985952 AACTCCGTAT
* * * * *
27985962 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATTAAACGAGCGTGCGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCA-CAAACGAGCGTGCGGGCGCTCAA
* * * * *
27986027 CCCACCGGAGAGGTAGAATGCGCAAGCCGAGGATGGGCCTGGCCCCCCATGCGTGCTGTCAATCT
65 CCAACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCC-GACCCCCC-TGCGTGCTGTCGATCC
* * * *
27986092 TGTTGTCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
128 TGCTATCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
* * * *
27986157 CCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATACACAAGCCAGGGATCGG
193 CCCACAAAATGAGCGTGCGGGCACTGAGCCG-TCGAAGAGGCATAATACGCAAGCCAGGGATCGA
* * *
27986222 CTCGATCCCCCTCTGCTTGCTGCCAGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGAG
257 CTCGGTCCCCTTCTGCTTACTGCCAGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGAG
27986287 ATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGG
322 ATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGG
*
27986352 AGAGGCAGAATACGCAAACCAGGGATCGGCTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCA
387 AGAGGCAGAATACGCAAACCAGGGATCGACTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCA
* *
27986417 CAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAAC
452 CAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAAC
* * *
27986482 TCCGTATGCCTAAGTCAGCTCATGAAACGAGCGTGCGGGTGCTCAACCGACTGGAGAGGCTGGCC
517 TCCGTATGCCTAAGTCAACTCATGAAACAAGCGTGCGGGTGCTCAACCGACTGAAGAGGCTGGCC
* *
27986547 GGAGAGGCATAATGCGCAAGCCAGAGATAAACCTGGTCCTCCTCTACGTGCTGTCGATCTTGGTA
582 GGAGAGGCATAATGCGCAAGCCAGAGATAAACCTGGTCCCCCTCTACGTGCTGTCGATCCTGGTA
*
27986612 CCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGG
647 CCGGTCCTGCTACCACAACCCTCGATCCGGCTGGG
* *
27986647 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACAAATCGAGCGTTCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACAAA-CGAGCGTGCGGGCGCTCAA
* * *
27986712 CCGACCGAAGAGGTAGAATGCGCAAGCCGAGGATCGGCTCGACCCCCCTACGTGCTGTCGATCCT
65 CCAACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGC-CGACCCCCCTGCGTGCTGTCGATCCT
* * *
27986777 GCTACCGCAAGCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
129 GCTATCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
* *
27986842 CCACAAAATGAGCGTGTGGGCGCTGAGCCGTCTGAAGAGGCATAATACGCAAGCCAGGGATCGAC
194 CCACAAAATGAGCGTGCGGGCACTGAGCCGTC-GAAGAGGCATAATACGCAAGCCAGGGATCGAC
* * *
27986907 TCGGTCCCCTTCTGCTTACTGCCAGTCCCGTTGCCACAACCCTCGGTCTGACTGGGGCTTAGAGA
258 TCGGTCCCCTTCTGCTTACTGCCAGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGAGA
*
27986972 TGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGTCGGA
323 TGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGGA
*
27987037 GAGGCAGAATACGCAAGCCAGGGATCGACTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCAC
388 GAGGCAGAATACGCAAACCAGGGATCGACTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCAC
* * *
27987102 GACCCTCGATCTGGTTCGATCTTATATTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAACT
453 AACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAACT
*
27987167 CCGTATGCCTAAGTCAACTCATGAAACAAGCGTGCGGGTGCTCAACCGA-TCGAAGAGGCTGGCT
518 CCGTATGCCTAAGTCAACTCATGAAACAAGCGTGCGGGTGCTCAACCGACT-GAAGAGGCTGGCC
* * * * *
27987231 GGAGAGGCATAGTGTGCAAGCCAGAGATCAGCCTGGTCCCCCTCTATGTGCTGTCGATCCTGGTA
582 GGAGAGGCATAATGCGCAAGCCAGAGATAAACCTGGTCCCCCTCTACGTGCTGTCGATCCTGGTA
* **
27987296 CTGGTCCTGCTGTCACAACCCTCGATCCGGCTGGG
647 CCGGTCCTGCTACCACAACCCTCGATCCGGCTGGG
*
27987331 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGAGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAC-AAACGAGCGTGCGGGCGCTCAA
* * * * *
27987396 CCAATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCAACCGGAGAGGTAGAATGCGCAAGCCGAGGATCG-GCCGA-CCCCCCTGCGTGCTGTCGATCC
** ** * * * *
27987461 TGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGTTTGGGAATGAACTCCGCATCCCTAAGTCAA
128 TGCTATCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
** * * ** * * *
27987526 CCCATGAAATGAGCATGCGGGCATTGAGCCGGTCGGGGAGGCATAATACGCAAGTCGGGGATCAA
193 CCCACAAAATGAGCGTGCGGGCACTGAGCC-GTCGAAGAGGCATAATACGCAAGCCAGGGATCGA
*
27987591 CCCGGTCCCCTTCTGC
257 CTCGGTCCCCTTCTGC
27987607 GTGCTGTCGA
Statistics
Matches: 862, Mismatches: 90, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
683 2 0.00
684 616 0.71
685 240 0.28
686 4 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (681 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACAAACGAGCGTGCGGGCGCTCAAC
CAACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCGACCCCCCTGCGTGCTGTCGATCCTGC
TATCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCC
ACAAAATGAGCGTGCGGGCACTGAGCCGTCGAAGAGGCATAATACGCAAGCCAGGGATCGACTCG
GTCCCCTTCTGCTTACTGCCAGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGAGATGG
AATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGGAGAG
GCAGAATACGCAAACCAGGGATCGACTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCACAAC
CCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAACTCCG
TATGCCTAAGTCAACTCATGAAACAAGCGTGCGGGTGCTCAACCGACTGAAGAGGCTGGCCGGAG
AGGCATAATGCGCAAGCCAGAGATAAACCTGGTCCCCCTCTACGTGCTGTCGATCCTGGTACCGG
TCCTGCTACCACAACCCTCGATCCGGCTGGG
Found at i:27988221 original size:475 final size:475
Alignment explanation
Indices: 27987298--27988235 Score: 1021
Period size: 475 Copynumber: 2.0 Consensus size: 475
27987288 TCCTGGTACT
* * * *
27987298 GGTCCTGCTGTCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
*
27987363 GCCAAACCACGAAACGAGCGTGAGGGCGCTCAACCAATCGGAGAGGCAGAATGCGCAAGCTGGGG
66 GCCAAACCACGAAACGAGCGTGAGGGCGCTCAACCAATCGGAGAGGCAGAATGCGCAAGCCGGGG
** * * *
27987428 ATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTCTGATCTT
131 ATCGACCCGATCCCCCCCACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTT
** * * * * * *
27987493 AGTTTGGGAATGAACTCCGCATCCCTAAGTCAACCCATGAAATGAGCATGCGGGCATTGAGCCGG
196 AGACTAGGAATGAACTCCACATCCCTAAGTCAACCCATGAAATGAGCATACGGGCACTAAGCCGA
* * ** * * ***
27987558 TCGGGGAGGCATAATACGCAAGTCGGGGATCAACCCGGTCCCCTTCTGCGTGCTGTCGAACCTTT
261 TCGGAGAGGCATAATACGCAAGCCAAGGATCAACCCGATCCCCCTCTGCGTGCTGTCGAACCCAC
* * * * * *
27987623 TATCGCAGCCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAACCC
326 TACCACAACCCTCAGTCCGAGCTGAGCTTAGATT-GGAATGAACTCTGTATGCATAAGCCAACCC
* * * * * * *
27987688 ACGAAACGAGCATACGATCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGACTC
390 ACGAAACGAGCATACGAGCACTCAACCAGCCGAAGAGACAGAATGCACAAGCCGGGGATCGACTC
27987753 GATCCCCCTCTGCGTGTTGTC
455 GATCCCCCTCTGCGTGTTGTC
* *
27987774 GGTCCCGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * *** ** * *
27987839 GCCAACCCACGAATCGAGCGTGCGGGTGCT-TGTCGGTCGGAGAGGTAGAATGCGTAAGCCGGGG
66 GCCAAACCACGAAACGAGCGTGAGGGCGCTCAACCAATCGGAGAGGCAGAATGCGCAAGCCGGGG
* * *
27987903 ATCGACTCGTTCCCCCCCACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTT
131 ATCGACCCGATCCCCCCCACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTT
* * * * *
27987968 AGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCACTAAGCTGA
196 AGACTAGGAATGAACTCCACATCCCTAAGTCAACCCATGAAATGAGCATACGGGCACTAAGCCGA
* ** * * **
27988033 TCGGAGAGGCATAATGCGCAAGCCAAGGA-CTGGCCTGATCCCCCTCTGCTTGCTG-CAGGTCCC
261 TCGGAGAGGCATAATACGCAAGCCAAGGATC-AACCCGATCCCCCTCTGCGTGCTGTC-GAACCC
*
27988096 ACTACCACAACCCTC-GATCCG-GCTGGAGCTTAGACATT-GAATGAACTCCT-TATGCCTAAGC
324 ACTACCACAACCCTCAG-TCCGAGCT-GAGCTTAG--ATTGGAATGAACT-CTGTATGCATAAGC
* * ** * * *
27988157 CAACCCATGAAACGGGTTTGCTG-GCACTCAACC-GATCGGAGAGACAGAATGCACAAGCCGGGG
384 CAACCCACGAAACGAGCATAC-GAGCACTCAACCAG-CCGAAGAGACAGAATGCACAAGCCGGGG
* *
27988220 ATCGGCTCGGTCCCCC
447 ATCGACTCGATCCCCC
27988236 CTACGTGCTA
Statistics
Matches: 375, Mismatches: 78, Indels: 19
0.79 0.17 0.04
Matches are distributed among these distances:
474 6 0.02
475 278 0.74
476 88 0.23
477 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (475 bp):
GGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAAACCACGAAACGAGCGTGAGGGCGCTCAACCAATCGGAGAGGCAGAATGCGCAAGCCGGGG
ATCGACCCGATCCCCCCCACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTT
AGACTAGGAATGAACTCCACATCCCTAAGTCAACCCATGAAATGAGCATACGGGCACTAAGCCGA
TCGGAGAGGCATAATACGCAAGCCAAGGATCAACCCGATCCCCCTCTGCGTGCTGTCGAACCCAC
TACCACAACCCTCAGTCCGAGCTGAGCTTAGATTGGAATGAACTCTGTATGCATAAGCCAACCCA
CGAAACGAGCATACGAGCACTCAACCAGCCGAAGAGACAGAATGCACAAGCCGGGGATCGACTCG
ATCCCCCTCTGCGTGTTGTC
Found at i:27988234 original size:159 final size:157
Alignment explanation
Indices: 27987298--27988244 Score: 567
Period size: 159 Copynumber: 6.0 Consensus size: 157
27987288 TCCTGGTACT
* * * * *
27987298 GGTCCTGCTGTCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * * *
27987363 GCCAAACCACGAAACGAGCGTGA-G-GGCGCTCAACCAATCGGAGAGGCAGAATGCGCAAGCTGG
66 GCCAACCCATGAAACG-G-GT-ATGCGGCACT-AACCGATCGGAGAGGCAGAATGCGCAAGCCGG
*
27987426 GGATCGACCCGATCCCCC-CTGCGTGCTGTC
127 GGATCGACTCGATCCCCCTCTGCGTGCTGTC
* * ** * * * * * ** ** *
27987456 GATCCTGCTATCGCAACCCTCGGTCTGGTCT-GATCTTAG-TTTGGGAATGAACTCCGCATCCCT
1 GGTCCCGCTGCCACAACCCTCGATC-CGACTGGAGCTTAGACAT-GGAATGAACTCCATATGCCT
* * * * * * * * * * *
27987519 AAGTCAACCCATGAAATGAGCATGCGGGCATTGAGCCGGTCGGGGAGGCATAATACGCAAGTCGG
64 AAGCCAACCCATGAAACGGGTATGC-GGCACT-AACCGATCGGAGAGGCAGAATGCGCAAGCCGG
* * * *
27987584 GGATCAACCCGGTCCCCTTCTGCGTGCTGTC
127 GGATCGACTCGATCCCCCTCTGCGTGCTGTC
** *** ** * * * * ** *
27987615 GAACCTTTTATCGCAGCCCTC-AGTCCGATCT-GATCTTAGA-TTGGGAATGAACTCTGTATGCA
1 GGTCCCGCTGCCACAACCCTCGA-TCCGA-CTGGAGCTTAGACAT-GGAATGAACTCCATATGCC
* * * * * * * * * * *
27987677 TAAGTCAACCCACGAAACGAGCATACGATCACTGAGCC-AGCCGAAGAGGCATAATGCGCAAGTC
63 TAAGCCAACCCATGAAACGGGTATGCG-GCACT-AACCGA-TCGGAGAGGCAGAATGCGCAAGCC
*
27987741 GGGGATCGACTCGATCCCCCTCTGCGTGTTGTC
125 GGGGATCGACTCGATCCCCCTCTGCGTGCTGTC
* * * *
27987774 GGTCCCGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * ** ** *** * * *
27987839 GCCAACCCACGAATCGAGCGTGCGGGTGCTTGTCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGA
66 GCCAACCCATGAAACGGGTATGC-GGCACTAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGA
* **
27987904 TCGACTCGTTCCCCC-CCACGTGCTGTC
130 TCGACTCGATCCCCCTCTGCGTGCTGTC
* * * * *
27987931 GATCCTGCTGTCGCAACCCTCGATCCGATCT-GATCTTAGAC-TAGGAATGAACTCCATATGCCT
1 GGTCCCGCTGCCACAACCCTCGATCCGA-CTGGAGCTTAGACAT-GGAATGAACTCCATATGCCT
* * * * *
27987994 AAGTCAACCCATGAAATGAGCGTATG-GGCACTAAGCTGATCGGAGAGGCATAATGCGCAAGCCA
64 AAGCCAACCCATGAAACG-G-GTATGCGGCACTAA-CCGATCGGAGAGGCAGAATGCGCAAGCCG
* * * *
27988058 AGGACTGGCCT-GATCCCCCTCTGCTTGCTG-C
126 GGGA-TCGACTCGATCCCCCTCTGCGTGCTGTC
* * * * *
27988089 AGGTCCCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATTGAATGAACTCCTTATGCCTA
1 -GGTCCCGCTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCTA
* * *
27988154 AGCCAACCCATGAAACGGGTTTGCTGGCACTCAACCGATCGGAGAGACAGAATGCACAAGCCGGG
65 AGCCAACCCATGAAACGGGTATGC-GGCACT-AACCGATCGGAGAGGCAGAATGCGCAAGCCGGG
* * *
27988219 GATCGGCTCGGTCCCCC-CTACGTGCT
128 GATCGACTCGATCCCCCTCTGCGTGCT
27988245 ATCGATCCTA
Statistics
Matches: 606, Mismatches: 153, Indels: 60
0.74 0.19 0.07
Matches are distributed among these distances:
155 1 0.00
156 3 0.00
157 81 0.13
158 194 0.32
159 322 0.53
160 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GGTCCCGCTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCTAA
GCCAACCCATGAAACGGGTATGCGGCACTAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAT
CGACTCGATCCCCCTCTGCGTGCTGTC
Found at i:27988326 original size:26 final size:26
Alignment explanation
Indices: 27988282--27988332 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
27988272 TTGATCTGAT
* * *
27988282 CTTAGACTGGGAATTAACTCCGTATC
1 CTTAGACAGGGAATGAACTACGTATC
*
27988308 CTTAGACAGGGGATGAACTACGTAT
1 CTTAGACAGGGAATGAACTACGTAT
27988333 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTACGTATC
Found at i:27989444 original size:159 final size:158
Alignment explanation
Indices: 27989018--27989457 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 158
27989008 GGCTCAAAAT
* * *
27989018 CTTAGACTAGGAATGAACTCCATATGCCTAAACCAACCCACGAAAT-AAGCGTGCGGGCGCTCAG
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATG-AATCGAGCGTGCGGGCGCTCAG
* * * *
27989082 TCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAACC
65 TCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGAACC
* * ** * *
27989147 TTCTGTCGTAACCCTCAGTCCGATCTGAT
130 TGCTGCCACAACCCTCAGTCCGAGCTGAG
* *** * * * ** * * *
27989176 CTTAGATTAGGAATGAACTTTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGATCGTTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAATCGAGCGTGCGGGCGCTCAGT
* * * * * * **
27989241 CGATCGAAGAGGCATAATGCACAAGCCGGGGATCGGCTCAGTCCCCCTCTGCGTGTTGCCG-GTC
66 CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGAACC
* *
27989305 TCGCTGCCACAACCCTCAGTCTG-GCTGGGG
130 T-GCTGCCACAACCCTCAGTCCGAGCT-GAG
* * *
27989335 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAATCGGGCGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCATGAATCGAGCGTGCGGGCGCTCAG
* *
27989399 TCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCCTACGTGCTG
65 TCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTG
27989458 TCGATCTAAC
Statistics
Matches: 219, Mismatches: 57, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.01
158 91 0.42
159 121 0.55
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAATCGAGCGTGCGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGAACCT
GCTGCCACAACCCTCAGTCCGAGCTGAG
Found at i:27992523 original size:26 final size:26
Alignment explanation
Indices: 27992485--27992537 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27992475 GGCTCAAAAT
27992485 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
27992511 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
27992537 C
1 C
27992538 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:27993396 original size:26 final size:26
Alignment explanation
Indices: 27993367--27993419 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27993357 CCATTCCGAT
27993367 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
27993393 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
27993419 C
1 C
27993420 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:27993697 original size:195 final size:197
Alignment explanation
Indices: 27993344--27993697 Score: 491
Period size: 195 Copynumber: 1.8 Consensus size: 197
27993334 ATCCTGCTGT
* * * *
27993344 CGCAACCCTCGATCCATTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGGATGA
1 CGCAACCCTCGATCCATTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGA
** * * * *
27993409 ACTCCGTATGCCTAAGTTAACCCGTGAAACGAGCGTACGGGCGCTCAGCCAGTCGGAGAGGTAGA
66 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAACCAGTCGGAGAGCTAGA
* *
27993474 ATGCGTAAGCCGGGGATCGACTCGATCCCCCCTTACGTTCTGTCGATCCTGCTGCTGGTCCTACT
131 ATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTACGTTCTGTCGATCCTGCTGCTGGTCCTACT
27993539 AC
196 AC
* *
27993541 CGCAACCCTCGGTCCGATT-TGATCTTAGACT-GGAATGAACTCCATATGCTTAGACAT-GGAAT
1 CGCAACCCTCGATCC-ATTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA-ATGGGAAT
* * *
27993603 GAACTCTGTA-GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGCTA
64 GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAACCAGTCGGAGAGCTA
* *
27993667 GAATGCGCAAGCTGGGGATTGACCCGATCCC
129 GAATGCGCAAGCCGGGGATCGACCCGATCCC
27993698 TCCTGCATGC
Statistics
Matches: 136, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
195 73 0.54
196 35 0.26
197 25 0.18
198 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (197 bp):
CGCAACCCTCGATCCATTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGA
ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAACCAGTCGGAGAGCTAGA
ATGCGCAAGCCGGGGATCGACCCGATCCCCCCTTACGTTCTGTCGATCCTGCTGCTGGTCCTACT
AC
Found at i:27994470 original size:26 final size:26
Alignment explanation
Indices: 27994430--27994482 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27994420 CTGGTCTGAT
27994430 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
27994456 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCGTATG
27994482 C
1 C
27994483 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:27994630 original size:868 final size:864
Alignment explanation
Indices: 27993405--27995913 Score: 3150
Period size: 868 Copynumber: 2.9 Consensus size: 864
27993395 TAGATTGGGG
** * * * * * * *
27993405 ATGAACTCCGTATGCCTAAGTTAACCCGTGAAACGAGCGTACGGGCGCTCAGCCAGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAACCAGCCGGAGAGG
* * * * * * * * *
27993470 TAGAATGCGTAAGCCGGGGATCGACTCGATCCCCCCTTACGTTCTGTCGATCCTGCTGCTGGTCC
66 CAGAATGCGCAAGCCGGGGATTGGCTCGGTCCCCCC-TGCGTGCTGTCGATCCTGCTGCTCGTCT
* * * *
27993535 TACTACCGCAACCCTCGGTCCGATTTGATCTTAGACTGGAATGAACTCCATATGCTTAGACATGG
130 TACTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCCATATGCTTAGACATGG
* * *
27993600 AATGAACTCTGTA-GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGA-
195 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAG
* ** * * ** *
27993663 GCTAGAATGCGCAAGCTGGGGATTGACCCGATCCCTCCTGCATGCTGTTGATCCTATTACCGTAA
260 GC-AAAATGCGCAAGCTGGGGACCGACCCGATCCC-CCTGCGTGCTGTCGATCCTGCTACCGCAA
*
27993728 CCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACCCATGAAACG
323 CCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACCCATGAAACG
* * * * * *
27993793 AGTGTTCGGGCACTGAGCCGGCTTGAGAGGCATAATGAGAAAACCAGGGATCAGCCCGGTCCCCC
388 AGAGTTCGGGCACTGAGCTGGCTGGAGAGGCATAATGCGAAAGCC-GGGATCAGCCCGATCCCCC
* * * *
27993858 TCTGTGTGCTGCTGGTCCCACTGCCACAACCCTCAGTCTGGTTAGGGCATAGACATGGAATGAAC
452 TCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCAGTCTGGCT-GGGCTTAGACATGGAATGAAC
** * * *
27993923 TCCCTATGCATAAGCCAACCCACAAAACGGGCGTACGAGTGCTCTGTCGGTCCGAGAGGCAGAAT
516 TCCCTATGCATAAGCCAACCCATGAAATGGGCGTGCGAGCGCTCTGTCGGTCCGAGAGGCAGAAT
*
27993988 GCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCGCATCCCTCGGT
581 GCGCAAGCCGGGGATCGACTCGGTCCCCCCTACGTGTTGTCGATCCTGCTACCGCATCCCTCGGT
* *
27994053 CCGATCCAATCTTAGACTGGGAACAAACTCCGTATGCTTAGATTGGGGATTAACTCTGTATGCCT
646 CCGATCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATTAACTCTGTATGCCT
* * *
27994118 AAGTCAACCCATGAAATGAGCATGCGGGCGCTCAACCTGCCGGAGACGCATAATGCGTAAGCCAG
711 AAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCCGGAGACGCATAATGCGCAAGCCAG
* ** * *
27994183 GGATCAGCCCCGTCCCCCTTTGGGTGCTGTCGAACCCGCTGCCAGTCTTGCTACCACAACCCTCG
776 GGATCAACCCCGTCCCCCTTTGCATGCTGTCAAACCCGCTGCCAGTCCTGCTACCACAACCCTCG
*
27994248 GTCCGGCTGGGGCTTAGACATGGA
841 GTCCGACTGGGGCTTAGACATGGA
* *
27994272 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAACCAGCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAACCAGCCGGAGAGG
* * ** *
27994337 CAGAATGCGCAAGTCGGGGATTGGC-CTGGTCCCCCCTGCATGCTACCGATCCTACTGCTCGTCT
66 CAGAATGCGCAAGCCGGGGATTGGCTC-GGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTCGTCT
* * *
27994401 TGCTATCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACATG
130 TACTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG-AATGAACTCCATATGCTTAGACATG
* * *
27994466 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTTAGCCGGTAGGAGA
194 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
* *
27994531 GGCAAAATGCGCAAGCTGGGGACCGGCCCGATCCCCACTGCGTGCTGTCGATCCTGCTGCCGCAA
259 GGCAAAATGCGCAAGCTGGGGACCGACCCGATCCCC-CTGCGTGCTGTCGATCCTGCTACCGCAA
* * * *
27994596 CCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAAC-TCGGTATGCCTAATTCAGCCCATGAAAT
323 CCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAATTCAACCCATGAAAC
* * *
27994660 GAGAGTTCGGGCACTGAGCTGGCTGGAGACGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCT
387 GAGAGTTCGGGCACTGAGCTGGCTGGAGAGGCATAATGCGAAAGCC-GGGATCAGCCCGATCCCC
* * * *
27994725 CTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGCCTTAGACCTAGAATGAA
451 CTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCAGTCTGGCTGGG-CTTAGACATGGAATGAA
* * * * * *
27994790 CTCCCTATGCATAAGCTAATCCATGAAATGGGCATGCGAGCGCTCTGTCAGTCGGAGAGTCAGAA
515 CTCCCTATGCATAAGCCAACCCATGAAATGGGCGTGCGAGCGCTCTGTCGGTCCGAGAGGCAGAA
* * ** * ** * *
27994855 TGCGCAAGCCAGGGATCGGCTCGACCCCCCCTACGTGCTACCGATCCTACTGCCGCATCCC-CTG
580 TGCGCAAGCCGGGGATCGACTCGGTCCCCCCTACGTGTTGTCGATCCTGCTACCGCATCCCTC-G
* *
27994919 GTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATTAACTCTGTATGC
644 GTCCGATCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATTAACTCTGTATGC
* * *
27994984 TTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCATAATGCGCAAGCT
709 CTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCCGGAGACGCATAATGCGCAAGCC
27995049 AGGGATCAACCCCGTCCCCCTTTGCATGCTGTCAAACCCGCTGCCAGTCCTGCTACCACAACCCT
774 AGGGATCAACCCCGTCCCCCTTTGCATGCTGTCAAACCCGCTGCCAGTCCTGCTACCACAACCCT
*
27995114 GGGTCCGACTGGGGCTTAGACATGGA
839 CGGTCCGACTGGGGCTTAGACATGGA
*
27995140 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAACCAACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAACCAGCCGGAGAGG
* *
27995205 CAAAATGCGCAAGCCGGGGATTGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTCATCTT
66 CAGAATGCGCAAGCCGGGGATTGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTCGTCTT
* *
27995270 TCTATCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGG
131 ACTATCGCAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCATATGCTTAGACATGG
** * * * * *
27995335 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCCGTCGATCGGAGAG
195 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAG
* * * * ** * * * * *
27995400 CCAAAATGCACAAGC-CGAGACCGACTTGGTCCCCCTTACGTGCTATCAATCTTGCTACCGCAAC
260 GCAAAATGCGCAAGCTGGGGACCGACCCGATCCCCC-TGCGTGCTGTCGATCCTGCTACCGCAAC
* * * * * * *
27995464 TCTCAATTCTGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
324 CCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACCCATGAAACGA
* * * * * * * * ** *
27995529 GCGTGCAGGCATTGAGCTAGCCGGAGAGGCATAAT-CGTAAGTCGAGGATTGGCCTGATCCCCCT
389 GAGTTCGGGCACTGAGCTGGCTGGAGAGGCATAATGCGAAAGCCG-GGATCAGCCCGATCCCCCT
* ** * * *
27995593 CTACGTGCTGCCAGTCCCGCTACCACAACCCTCAGTCTAGCTGGGGCTTCGACATGGAATGAACT
453 CTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCAGTCTGGCT-GGGCTTAGACATGGAATGAACT
* * * * * *
27995658 CCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCACTCAGTCGG-CCGGAGAGGTAGAAT
517 CCCTATGCATAAGCCAACCCATGAAATGGGCGTGCGAGCGCTCTGTCGGTCC-GAGAGGCAGAAT
* * * * *
27995722 GCGCAAGCCGGGGATCGAC-CTGGT-CCCCCTACGTTTTGTCGATCCTGCTATCGTAACCCTCGA
581 GCGCAAGCCGGGGATCGACTC-GGTCCCCCCTACGTGTTGTCGATCCTGCTACCGCATCCCTCGG
** * * * * **
27995785 TCCGATCTGATCTTAGACTGAGAATTAACTCCGTATGCTTAGACTGAGGATGAACTCCATATGCC
645 TCCGATCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATTAACTCTGTATGCC
* * * * * *
27995850 TAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAACTGACCAGAGAGGCA-AGATGCGCAAGCC
710 TAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCCGGAGACGCATA-ATGCGCAAGCC
27995914 GATTGTCGAA
Statistics
Matches: 1402, Mismatches: 222, Indels: 38
0.84 0.13 0.02
Matches are distributed among these distances:
864 1 0.00
865 141 0.10
866 196 0.14
867 245 0.17
868 814 0.58
869 5 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (864 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAACCAGCCGGAGAGG
CAGAATGCGCAAGCCGGGGATTGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTCGTCTT
ACTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCCATATGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
CAAAATGCGCAAGCTGGGGACCGACCCGATCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCC
TCGATTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACCCATGAAACGAGA
GTTCGGGCACTGAGCTGGCTGGAGAGGCATAATGCGAAAGCCGGGATCAGCCCGATCCCCCTCTG
CGTGCTGCTGGTCCCGCTGCCACAACCCTCAGTCTGGCTGGGCTTAGACATGGAATGAACTCCCT
ATGCATAAGCCAACCCATGAAATGGGCGTGCGAGCGCTCTGTCGGTCCGAGAGGCAGAATGCGCA
AGCCGGGGATCGACTCGGTCCCCCCTACGTGTTGTCGATCCTGCTACCGCATCCCTCGGTCCGAT
CCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATTAACTCTGTATGCCTAAGTC
AACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCCGGAGACGCATAATGCGCAAGCCAGGGATC
AACCCCGTCCCCCTTTGCATGCTGTCAAACCCGCTGCCAGTCCTGCTACCACAACCCTCGGTCCG
ACTGGGGCTTAGACATGGA
Found at i:27994814 original size:159 final size:158
Alignment explanation
Indices: 27994456--27994819 Score: 378
Period size: 158 Copynumber: 2.3 Consensus size: 158
27994446 ACTCCGTATG
* * ** * * *
27994456 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTTAGC
1 CTTAGACCTGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGAGTGCGGGCACTGAGC
* * * *
27994521 CGGTAGGAGAGGCAAAATGCGCAAGCTGGGGACCGGCCCGATCCCCACTGCGTGCTGTCGATCCT
66 CGGTAGGAGACGCAAAATGCGCAAGCCGGGGACCAGCCCGATCCCCACTGCGTGCTGTCGATCCC
* * * *
27994586 GCTGCCGCAACCCTTGGTTCGGTCTGAT
131 GCTGCCACAACCCTCGGTCCGGTCTGAC
* * * *
27994614 CTTAGA-CTGGGAATGAACTCGGTATGCCTAA-TTCAGCCCATGAAATGAGAGTTCGGGCACTGA
1 CTTAGACCT-GGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAATGAGAGTGCGGGCACTGA
* * * *
27994677 GCTGGCT-GGAGACGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTG-CTG
64 GCCGG-TAGGAGACGCAAAATGCGCAAGCCGGGGACCAGCCCGATCCC-CACTGCGTGCTGTC-G
* *
27994740 GTCCCGCTGCCACAACCCTCGGTCCGG-CTGGGC
126 ATCCCGCTGCCACAACCCTCGGTCCGGTCT-GAC
* * * *
27994773 CTTAGACCTAGAATGAACTCCCTATGCATAAGCTAATCCATGAAATG
1 CTTAGACCTGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATG
27994820 GGCATGCGAG
Statistics
Matches: 166, Mismatches: 32, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.01
158 91 0.55
159 71 0.43
160 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACCTGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGAGTGCGGGCACTGAGC
CGGTAGGAGACGCAAAATGCGCAAGCCGGGGACCAGCCCGATCCCCACTGCGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGGTCTGAC
Found at i:27994967 original size:26 final size:26
Alignment explanation
Indices: 27994931--27994986 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
27994921 TCGATCCAAT
27994931 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
27994957 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27994983 CTTA
1 CTTA
27994987 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27995825 original size:26 final size:26
Alignment explanation
Indices: 27995796--27995848 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27995786 CCGATCTGAT
* *
27995796 CTTAGACTGAGAATTAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
27995822 CTTAGACTGAGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
27995848 C
1 C
27995849 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:27996567 original size:26 final size:26
Alignment explanation
Indices: 27996531--27996583 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27996521 GGCTCAAAAT
27996531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27996557 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27996583 C
1 C
27996584 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27997181 original size:159 final size:159
Alignment explanation
Indices: 27996768--27997196 Score: 443
Period size: 159 Copynumber: 2.7 Consensus size: 159
27996758 CCCGTATGCC
* * *
27996768 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCTG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
27996833 ACCA-GAGAGGTAGAATGCGCAAGTCGGGGACCGACCCAGTCCCCCCCTACATGCTGTCGATCCT
66 A-CAGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTACATGCTATCGATCCT
* * * ** ** *
27996897 ACCGTCGCAACCTTCGATTTGGTTCGATCT
130 ACCGCCACAACCCTCGATCCGACTCGAGCT
* * * * *
27996927 TACAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCC
1 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *** *
27996991 GACCGGAGAGGCATATTGCACAAG-CTGGGGATCGACCCGGTCCCCCTCTGTGTGCTATCGGTCC
65 GACAGGAGAGGTAGAATGCGCAAGTC-GGGGATCGACCCGGTCCCCCCCTACATGCTATCGATCC
* * * * *
27997055 TACTGCCATAACCCTCGGTCCGACTGGGGCT
129 TACCGCCACAACCCTCGATCCGACTCGAGCT
*
27997086 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TAGGCGTGCGGGCGCTCAGCC
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCC
* * * *
27997150 GGCAGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCC
65 GACAGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCC
27997197 GGCGTGTTGC
Statistics
Matches: 214, Mismatches: 50, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 4 0.02
159 208 0.97
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
ACAGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCCTACATGCTATCGATCCTA
CCGCCACAACCCTCGATCCGACTCGAGCT
Found at i:27997826 original size:158 final size:158
Alignment explanation
Indices: 27997463--27997842 Score: 415
Period size: 158 Copynumber: 2.4 Consensus size: 158
27997453 AACTCCGTAT
* *
27997463 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
* * ** *
27997528 CCGGTCGGAGAGGTAGAATACGAAAGCCGGGGACCGACCCGGTCCCTCCTGCGTGCTGTCGATCT
66 CCGGTCGGAGAGGCAGAATACGAAAGCCAGGGACCGACCCGCCCCCTCCTGCGTGCTGTCGATCC
** ** * *
27997593 TGCTACCGTAGCCCTCGGTCCGGTCTGA
131 CACTACCACAACCCTCGGTCCGGGCTGA
* * * * *
27997621 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGACGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
27997685 GCTGGTTGGAGAGGCATAATACGTAAGTCAGGGATCGACCCGACCCCCT-CTGCGTGCTGTCGGT
65 ACCGGTCGGAGAGGCAGAATACGAAAGCCAGGGACCGACCCG-CCCCCTCCTGCGTGCTGTCGAT
* *
27997749 CCCACTGCCACAACCCTCGGT-CGGGCTGGG
129 CCCACTACCACAACCCTCGGTCCGGGCT-GA
* * * * *
27997779 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCATCCCATAAAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
27997843 GTCGACCGGA
Statistics
Matches: 180, Mismatches: 38, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
157 6 0.03
158 169 0.94
159 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
CCGGTCGGAGAGGCAGAATACGAAAGCCAGGGACCGACCCGCCCCCTCCTGCGTGCTGTCGATCC
CACTACCACAACCCTCGGTCCGGGCTGA
Found at i:27997884 original size:696 final size:698
Alignment explanation
Indices: 27996731--27998019 Score: 1768
Period size: 696 Copynumber: 1.8 Consensus size: 698
27996721 ACCGTCAGTT
*
27996731 TGGTGCGATCTTAGACTGGGAATGAACCCCGTATGCCTAGACATGGAATGAACTCCCTATGCCTA
1 TGGTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAGACATGGAATGAACTCCCTATGCCTA
* * * * *
27996796 AGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCTGACCAGAGAGGTAGAATGCGCAAGTCGGG
66 AGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGAGGTAGAATACGAAAGCCGGG
* **
27996861 GACCGACCCAGTCCCCCCCTACATGCTGTCGATCCTACCGTCGCAACCTTCGATTTGGTTCGATC
131 GACCGACCCAGTCCCCCCCTACATGCTGTCGATCCTACCGTAGC-ACCTTCGATCCGGTTCGATC
* * * *
27996926 TTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCC
195 TTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACGCTGAGCC
* * * * * *
27996991 GACCGGAGAGGCATATTGCACAAGCTGGGGATCGACCCGGTCCCCCTCTGTGTGCTATCGGTCCT
260 GACCGGAGAGGCATAATACACAAGCTAGGGATCGACCCGGACCCCCTCTGCGTGCTATCGGTCCC
*
27997056 ACTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
325 ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * *
27997121 CCACGAAATAGGCGTGCGGGCGCTCAGCCGGCAGGAGAGGTAGAATGCGCAAGTCAGGGATCGGC
390 CCACAAAATAGGCGTGCGGGCGCTCAGCCGACAGGAGAGGTAGAATGAGCAAGCCAGGGAACGGC
* *
27997186 CCGATCCCCCCGGCGTGTTGCCGATCCTGCTATCGAAACCCTCGGTCC-GGTCTGATCTTAGACT
455 CCGATCCCCCCGGCGTGCTGCCGATCCTGCTATCGAAACCCTCGGTCCAGTTC-GATCTTAGACT
* * *
27997250 AGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACA
519 AGGAATGAACTCCATATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACA
*
27997315 AGCGTGCGGGTGTTCAGTCGATCGGAAAGGCTGACGGAGAGGCATAATGCACAAGTCAGGGGTCG
584 AGCGGGCGGGTGTTCAGTCGATCGGAAAGGCTGACGGAGAGGCATAATGCACAAGTCAGGGGTCG
27997380 ACCCGGTCCCCCCCTATGTGCTACCAATCCTGCTGCCACAACCCTCGGTC
649 ACCCGGTCCCCCCCTATGTGCTACCAATCCTGCTGCCACAACCCTCGGTC
* * * *
27997430 TGGTCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
1 TGGTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAGACATGGAATGAACTCCCTATGCCTA
* * ** *
27997494 AGCCAACCCATGGAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATACGAAAGCCGGG
66 AGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGAGGTAGAATACGAAAGCCGGG
* * * * *
27997559 GACCGACCCGGT-CCCTCCTGCGTGCTGTCGATCTTGCTACCGTAGC-CC-TCGGTCCGG-TCTG
131 GACCGACCCAGTCCCCCCCTACATGCTGTCGATC---CTACCGTAGCACCTTCGATCCGGTTC-G
* * *
27997620 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGACGCTGA
192 ATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACGCTGA
* *** ** *
27997685 GCTGGTTGGAGAGGCATAATACGTAAG-TCAGGGATCGACCC-GACCCCCTCTGCGTGCTGTCGG
257 GCCGACCGGAGAGGCATAATACACAAGCT-AGGGATCGACCCGGACCCCCTCTGCGTGCTATCGG
* * *
27997748 TCCCACTGCCACAACCCTCGGTCGGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAGGC
321 TCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
27997813 CATCCCATAAAATGGGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGAGCAAGCC-GAGGA
386 CAACCCACAAAATAGGCGTGCGGGCGCTCAGCCGACAGGAGAGGTAGAATGAGCAAGCCAG-GGA
* *** * * * *
27997877 ACGGCCCGGTCCCCCCTTTGTGCTGCCGATCCTGCTGTCGTAACCCTCGTTGCAGTTCGATCTTA
450 ACGGCCCGATCCCCCCGGCGTGCTGCCGATCCTGCTATCGAAACCCTCGGTCCAGTTCGATCTTA
* * *
27997942 GACTGGGAATGAACTTCATATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCATGA
515 GACTAGGAATGAACTCCATATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACGA
*
27998007 AACGAGCGGGCGG
580 AACAAGCGGGCGG
27998020 ACGCTCAGCT
Statistics
Matches: 508, Mismatches: 75, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
695 1 0.00
696 255 0.50
697 116 0.23
698 113 0.22
699 14 0.03
700 9 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (698 bp):
TGGTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGAGGTAGAATACGAAAGCCGGG
GACCGACCCAGTCCCCCCCTACATGCTGTCGATCCTACCGTAGCACCTTCGATCCGGTTCGATCT
TACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACGCTGAGCCG
ACCGGAGAGGCATAATACACAAGCTAGGGATCGACCCGGACCCCCTCTGCGTGCTATCGGTCCCA
CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACAAAATAGGCGTGCGGGCGCTCAGCCGACAGGAGAGGTAGAATGAGCAAGCCAGGGAACGGCC
CGATCCCCCCGGCGTGCTGCCGATCCTGCTATCGAAACCCTCGGTCCAGTTCGATCTTAGACTAG
GAATGAACTCCATATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
CGGGCGGGTGTTCAGTCGATCGGAAAGGCTGACGGAGAGGCATAATGCACAAGTCAGGGGTCGAC
CCGGTCCCCCCCTATGTGCTACCAATCCTGCTGCCACAACCCTCGGTC
Found at i:27997989 original size:26 final size:26
Alignment explanation
Indices: 27997938--27997990 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
27997928 GCAGTTCGAT
* *
27997938 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
27997964 CTTAGACTAGGG-ATAAACTCCGTATG
1 CTTAGACT-GGGAATAAACTCCATATG
27997990 C
1 C
27997991 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:27998697 original size:26 final size:26
Alignment explanation
Indices: 27998660--27998711 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27998650 GCTCAAACTT
*
27998660 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
27998686 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
27998712 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:27999030 original size:26 final size:26
Alignment explanation
Indices: 27999001--27999053 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27998991 CCGGTTCAAT
27999001 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27999027 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27999053 C
1 C
27999054 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28000182 original size:159 final size:156
Alignment explanation
Indices: 27999921--28000420 Score: 549
Period size: 159 Copynumber: 3.2 Consensus size: 156
27999911 ACTCCATATG
27999921 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
27999986 C-AGTCGGAGAGGTAGAATGCGCAAGTCGGGGACCGACCCGATCCCCCCATGCGTGCTATCGATC
65 CGA-TCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCC-TGCGTGCTACCGATC
* * *
28000050 CCGCTGCCGTAACCCTTGGTCTGATCTGAT
128 CTGCTGCCGCAACCCTCGGTC-GATCTGAT
* * * * *
28000080 CTTAGGCTGGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
28000145 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCTGATCCCCCTCTGCATGCTACCGATCC
65 CGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTACCGATCC
* * * * **
28000210 TGCTACCACAACCCTCGGTCCAACTTGGG
129 TGCTGCCGCAACCCTCGGTCGATC-TGAT
* * *
28000239 CTTAGACATGG-A--AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGGGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
28000301 CGACCGGAGAGGTAGAATGTGCAAGCTAAGGATTGAACCGGTCCCCCCTGTGTGTTACCGATCCT
65 CGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCT
* * *
28000366 GCTGTCGCAACCCTCGGTCCGGTCCGAT
130 GCTGCCGCAACCCTCGGT-CGATCTGAT
28000394 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
28000421 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 52, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
154 1 0.00
155 40 0.14
156 84 0.30
158 15 0.05
159 136 0.49
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTG
CTGCCGCAACCCTCGGTCGATCTGAT
Found at i:28000423 original size:26 final size:26
Alignment explanation
Indices: 28000394--28000446 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28000384 CCGGTCCGAT
28000394 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
28000420 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28000446 C
1 C
28000447 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28001167 original size:26 final size:26
Alignment explanation
Indices: 28001116--28001168 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28001106 GGCCCAAAAT
* *
28001116 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28001142 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28001168 C
1 C
28001169 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28002507 original size:159 final size:157
Alignment explanation
Indices: 28002062--28002509 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 157
28002052 ACCGGTCCTG
*
28002062 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTACCACAACCCTCGGT-CGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
28002127 CATGAATCGAGCGTGT-GGGCGGTTAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAC
65 CATGAAACGAGCGTGTAGGG-TG-TAGACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * * *
28002191 CTGGTCCCCCCCTGCATGCTGTCGATCCTA
128 CCGATCCCCCCCTACATGCTGCCGATCCCA
* * **** *
28002221 CTACCACAACCCTTGGTCCGCTCTAATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAAC
1 CTACCACAACCCTCGGTCGGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAAC
* ** * *
28002285 CCACGAAACGAGCGTGTAGGCGTTGT-GTTGGTCGGAGAGGCATAATGCACAAGCCGGGGATCGG
64 CCATGAAACGAGCGTGTAGG-G-TGTAGACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
* **
28002349 CCCGATCCCCCTCTATGTGCTGCC-AGTCCCA
127 CCCGATCCCCCCCTACATGCTGCCGA-TCCCA
* * * *
28002380 TTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACC
1 CTACCACAACCCTCGGTC-GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACC
* *
28002445 CATGAAACG-G-GTGTACGGGTGCTCAGACAGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
65 CATGAAACGAGCGTGTA-GGGTG-T-AGACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
28002508 CC
127 CC
28002510 TGGTCCTCCC
Statistics
Matches: 234, Mismatches: 44, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 9 0.04
159 207 0.88
160 7 0.03
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
CTACCACAACCCTCGGTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGAGCGTGTAGGGTGTAGACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
ATCCCCCCCTACATGCTGCCGATCCCA
Found at i:28003613 original size:157 final size:157
Alignment explanation
Indices: 28003327--28003614 Score: 355
Period size: 157 Copynumber: 1.8 Consensus size: 157
28003317 TTAGACATGT
* * * *
28003327 AATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGCGCTCAGCCGGTCGGAGAGG
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGTCGGAAAGG
* * * * * * *
28003392 TAGAATGCGAAAGCCGGGGATCGGCACGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAAC
66 CAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCATGCTGCCGATCCTGCTACCACAAC
28003457 CCTCGTCTGGTTGGGGCTTTGATATGG
131 CCTCGTCTGGTTGGGGCTTTGATATGG
* * * *
28003484 AATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGCGGGCGCTCAGCTGG-CTGGAAA
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGTC-GGAAA
* ** * * *
28003548 GGCAGTATCCGTGAGCTGGGGATTGACTCGATCCCCC-CTGCATGCTGCCGATCCTGCTACCACA
64 GGCAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCATGCTGCCGATCCTGCTACCACA
28003612 ACC
129 ACC
28003615 TTTGATCCAG
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
157 64 0.59
158 44 0.41
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (157 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGTCGGAAAGG
CAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCATGCTGCCGATCCTGCTACCACAAC
CCTCGTCTGGTTGGGGCTTTGATATGG
Found at i:28004136 original size:159 final size:157
Alignment explanation
Indices: 28003821--28004108 Score: 333
Period size: 159 Copynumber: 1.8 Consensus size: 157
28003811 CCGCTACCAT
* * * *
28003821 AACCCTCGGTCTGGTCCGATCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGATCCAATCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * *
28003886 CGAGCGTGTGGGTGCTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGACCGACCCAGTCCC
66 CGAGCGTATAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCAATCCC
* * *
28003951 CCCATGCGTGCTGTCAATCCTGCTGCCGC
131 CCCATGCGTACGGTC-A-CCCGCTGCCGC
* * *
28003980 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCGATCCAATCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * ** * *
28004045 TGAGCGTATAGGCGCTGAGCCAGCCGGAGAGGTATAATGCGTGAGCCGGGGATCAACCCAATCC
66 CGAGCGTATAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCAATCC
28004109 TCTCTATGTG
Statistics
Matches: 107, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
159 107 1.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
AACCCTCGGTCCGATCCAATCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGAGCGTATAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCAATCCC
CCCATGCGTACGGTCACCCGCTGCCGC
Found at i:28004376 original size:28 final size:27
Alignment explanation
Indices: 28004321--28004376 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
28004311 CCGATCCGAT
* * *
28004321 CTTAGACTGGGAATGAACTCTGTTATG
1 CTTAGACTGGAAATGAACTCCGTAATG
28004348 CTTAGACTAGGAAATGAACTCCGTAATG
1 CTTAGACT-GGAAATGAACTCCGTAATG
28004376 C
1 C
28004377 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 8 0.32
28 17 0.68
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGAAATGAACTCCGTAATG
Found at i:28005424 original size:26 final size:26
Alignment explanation
Indices: 28005388--28005440 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28005378 CTGATTCTAT
28005388 CTTAGACTGGGAAGGAACCCCGTATG
1 CTTAGACTGGGAAGGAACCCCGTATG
* * *
28005414 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACCCCGTATG
28005440 C
1 C
28005441 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACCCCGTATG
Found at i:28005804 original size:26 final size:26
Alignment explanation
Indices: 28005766--28005818 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28005756 CCAGTCTGAT
28005766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28005792 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28005818 C
1 C
28005819 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28006112 original size:158 final size:157
Alignment explanation
Indices: 28005792--28006396 Score: 495
Period size: 158 Copynumber: 3.8 Consensus size: 157
28005782 ACTCCGTATG
** * * * * *
28005792 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGAC-TGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCACTGAGC
*** * * * * * *
28005857 CGGGTGGAGAGGCAGAATGCGTAAGCTGGAGA-CGGCCCGGTCCCCCTTGCGTGCTGTCGATTCT
65 CGACCGGAGAGGCAGAATGCGCAAGCCGG-GATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCT
** ** ** ** * *
28005921 -ACTATCGTAATGCTTGGTCCAGTCTGAT
129 GACTGCCACAACCCCCGGTCCGGTCTAAT
* * * * *
28005949 CTTAGACTGGAATGAACTCCGCATGCCTTAAGTCAACCCACGAAATGAGCATTCGGGCACTAAGC
1 CTTAGACTGGAATGAACTCCGCATGCC-TAAGTCAACCCATGAAAAGAGCGTGCGGGCACTGAGC
* * *
28006014 CGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCTGATCCCCCCTGCGTGATGTCTATCCT
65 CGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCT
28006079 GA-TGCCACAACCCCCGGTCCGGTCTAAT
129 GACTGCCACAACCCCCGGTCCGGTCTAAT
* * * * * *
28006107 CTTAGAGTAGGAATGAACTTCGTATGCATAAGTTAACCCATGAAAAGAGTGTGCGGG-AGCTGAG
1 CTTAGACT-GGAATGAACTCCGCATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCA-CTGAG
* * * * * * *
28006171 CCGACCGAAGAGGGATAATGCGCAAGCCGGGGATCAGCCTGATCTCCCTCTGCGTGCTGCCGGTC
64 CCGACCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCTGATC-CCCCCTGCGTGCTGTCGATC
* ** * * **
28006236 C-CACTGCCACAACCCTTGGTTCGG-ATACGG
127 CTGACTGCCACAACCCCCGGTCCGGTCTA-AT
* * * * *
28006266 CTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCATTGAG
1 CTTAGAC-TGGAATGAACTCCGC-ATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCACTGAG
* * *
28006330 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGAGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
64 CCGACCGGAGAGGCAGAATGCGCAAGCCGG-GATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
28006395 TG
128 TG
28006397 CTGTTGCAAC
Statistics
Matches: 351, Mismatches: 82, Indels: 28
0.76 0.18 0.06
Matches are distributed among these distances:
156 18 0.05
157 61 0.17
158 137 0.39
159 133 0.38
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCACTGAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCTGA
CTGCCACAACCCCCGGTCCGGTCTAAT
Found at i:28006745 original size:171 final size:171
Alignment explanation
Indices: 28006449--28006811 Score: 403
Period size: 171 Copynumber: 2.1 Consensus size: 171
28006439 AACTCTATAA
* *
28006449 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAG
* * * * * * *
28006514 CGGTCCGGAGAGGCATAATGCACAAGTCGGGGACTAGCCCGATCCCTCTCTACGTGCTGCCAATC
66 CGGACCGGAGAGGCAGAATGCACAAGCCAGGAACTAGCCCGATCCCCCTCTACATGCTGCCAATC
*
28006579 CCGCTGCCGATCCTGCTGCCACAACCCTCAGTCTGGCTAGG
131 CCGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGCTAGG
* ** *
28006620 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCA
* * * *
28006684 GTC-GACCGGAGAGGCAGAATGCGCAAGCCAGGAA-TCGGCCTGGTCCCCC-CTTACATGCTGCC
65 G-CGGACCGGAGAGGCAGAATGCACAAGCCAGGAACT-AGCCCGATCCCCCTC-TACATGCTGCC
* * * * * * * *
28006746 GATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCTGG-TCCGA
127 AATCCCGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGCT-AGG
*
28006791 TCTTAGACTGGGAATGAACTC
1 GCTTAGACTGGGAATGAACTC
28006812 ATATGCTTAG
Statistics
Matches: 159, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
170 4 0.03
171 153 0.96
172 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAG
CGGACCGGAGAGGCAGAATGCACAAGCCAGGAACTAGCCCGATCCCCCTCTACATGCTGCCAATC
CCGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGCTAGG
Found at i:28008039 original size:26 final size:26
Alignment explanation
Indices: 28007998--28008051 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
28007988 TGGCTCAAAA
28007998 GCTTAGACTGGTAATGAACTCCATAT
1 GCTTAGACTGGTAATGAACTCCATAT
*
28008024 GCTTAGACATGG-AATGAACTCCGTAT
1 GCTTAGAC-TGGTAATGAACTCCATAT
28008050 GC
1 GC
28008052 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGTAATGAACTCCATAT
Found at i:28008385 original size:159 final size:157
Alignment explanation
Indices: 28008024--28008492 Score: 516
Period size: 159 Copynumber: 3.0 Consensus size: 157
28008014 AACTCCATAT
* *
28008024 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCATGAAA-CAAGCATGCGGGTGCTC
1 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAATGAA-CATGCGGGCGCTC
* * *
28008087 AGCC-AGCTGGAGAGGTATAATGCGCAAGCCAGGGATCAGCCCGGTTCCCCCTATGTGCTGTCGA
64 AGCCTA-CCGGAGAGGCATAATGCGCAAGCCAGGGATC-GCCCGGTCCCCCCTATGTGCTGTCGA
* *
28008151 TCCTGCTACCACAACCCTCAGTCCGATTCGA
127 TCCTGCTGCCACAACCCTCGGTCCGATTCGA
* * * * * * *
28008182 TCTTAGAC-TGAGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAACGTGCGGGCACTGA
1 GCTTAGACATG-GAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGAACATGCGGGCGCTCA
* * * *
28008246 GCCTACCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGGTCCCCTCCTACGTGCTGTCGGT
65 GCCTACCGGAGAGGCATAATGCGCAAGCCAGGGATC-GCCCGGTCCCC-CCTATGTGCTGTCGAT
* * * * *
28008311 CCCGCTGCCACAACCCTCGGTCTGGTTGGG
128 CCTGCTGCCACAACCCTCGGTCCGATTCGA
* * *
28008341 GCTTAGACATGGAATGAACTTCCTATTCCTAAGCCAACCCATGAAATGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGAACATGCGGGCGCTCAG
* * * * * *
28008406 -CTGACCGGAGATGCAAAATGCGCAAGTCGGGGATCGCCTCAGTCCCCCCTGTGTGCTGTCGATC
66 CCT-ACCGGAGAGGCATAATGCGCAAGCCAGGGATCGCC-CGGTCCCCCCTATGTGCTGTCGATC
* *
28008470 TTGCTGCCGCAACCCTCGGTCCG
129 CTGCTGCCACAACCCTCGGTCCG
28008493 GTCTGATCTT
Statistics
Matches: 255, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 124 0.49
159 127 0.50
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGAACATGCGGGCGCTCAG
CCTACCGGAGAGGCATAATGCGCAAGCCAGGGATCGCCCGGTCCCCCCTATGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGATTCGA
Found at i:28008529 original size:26 final size:26
Alignment explanation
Indices: 28008500--28008552 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28008490 CCGGTCTGAT
28008500 CTTAGACT-GGGAATAAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
* *
28008526 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
28008552 C
1 C
28008553 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:28014363 original size:26 final size:26
Alignment explanation
Indices: 28014325--28014377 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28014315 GGCTCAAAAT
*
28014325 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCATATG
*
28014351 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACACCATATG
28014377 C
1 C
28014378 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCATATG
Found at i:28014644 original size:160 final size:159
Alignment explanation
Indices: 28014351--28014757 Score: 357
Period size: 160 Copynumber: 2.6 Consensus size: 159
28014341 ACACCGTATG
* *
28014351 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAAGCCATGAAACGAGCGTGTCGACGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGTCGACGCTCAGC
* * * * * * * * *
28014416 CAGCCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACTCGGTCCTCTCCTGTTAGCTATCGATCC
66 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCCTGATAGCCACCGATCC
* *
28014481 TGCTACCGTAACCTTCGGTCCGGTCTGAT
131 TGCTACCATAACCCTCGGTCCGGTCTGAT
* * *
28014510 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCATGAAAACGAGCGTG-CGGGCGCTG
1 CTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCATG-AAACGAGCGTGTC-GACGCTC
* * *
28014573 AGCCAGCCGAAGAGGCATAATGTGCAAGCCGGGGATC-AGCCCGATCCCC-CTCTGCAT-GCCGC
63 AGCCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCTC-CTG-ATAGCCAC
* * **
28014635 CGGTCCTGCTACCATAACCCTCGGTCTGG-CTGGGG
125 CGATCCTGCTACCATAACCCTCGGTCCGGTCT-GAT
* * * * * * * * *
28014670 CTTAAACATAGAATGAACTCCCTAT--A-AAGCCAACCAACGGAATGGGCGTG-CGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGTC-GACGCTCAG
* * *
28014731 CCGGTCGGAGAGGCAGAATGCGCAAGC
65 CCAGCCGAAGAGGCAGAATGCGCAAGC
28014758 TACGGATCAG
Statistics
Matches: 202, Mismatches: 38, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
156 40 0.20
157 10 0.05
158 2 0.01
159 42 0.21
160 106 0.52
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGTCGACGCTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCCTGATAGCCACCGATCC
TGCTACCATAACCCTCGGTCCGGTCTGAT
Found at i:28014839 original size:26 final size:26
Alignment explanation
Indices: 28014810--28014861 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28014800 CGGTCTGATG
28014810 TTAGACT-GGGAATGAACTCCGTATGC
1 TTAGACTAGGG-ATGAACTCCGTATGC
*
28014836 TTAGACTAGGGATGAACTCTGTATGC
1 TTAGACTAGGGATGAACTCCGTATGC
28014862 CTAAGTCGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGGATGAACTCCGTATGC
Found at i:28015205 original size:26 final size:26
Alignment explanation
Indices: 28015176--28015228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28015166 CCGATCTGAT
*
28015176 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28015202 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28015228 C
1 C
28015229 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28015712 original size:27 final size:26
Alignment explanation
Indices: 28015674--28015734 Score: 81
Period size: 27 Copynumber: 2.4 Consensus size: 26
28015664 TTGGTCCCGA
28015674 TCCCG-AT-CTTAGACTGGGAATGAAC
1 TCCCGTATGCTTAGACTGGGAATG-AC
*
28015699 TCCCGTATGCTTAGACTGGGGATGAC
1 TCCCGTATGCTTAGACTGGGAATGAC
*
28015725 TTCCGTATGC
1 TCCCGTATGC
28015735 CCTTAAGTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 5 0.16
26 13 0.41
27 14 0.44
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (26 bp):
TCCCGTATGCTTAGACTGGGAATGAC
Found at i:28017666 original size:26 final size:26
Alignment explanation
Indices: 28017615--28017667 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28017605 CCGGTCTGAT
**
28017615 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28017641 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28017667 C
1 C
28017668 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28018425 original size:26 final size:26
Alignment explanation
Indices: 28018381--28018433 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28018371 CCGGTCTGAT
*
28018381 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
* *
28018407 CTTATACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
28018433 C
1 C
28018434 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:28019076 original size:26 final size:26
Alignment explanation
Indices: 28019047--28019098 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
28019037 CGGTCTGATG
*
28019047 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
* * *
28019073 TTAGATTGGGGATGAAATTCGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
28019099 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCGTATGC
Found at i:28019809 original size:26 final size:25
Alignment explanation
Indices: 28019780--28019830 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
28019770 GCTCAAACTT
28019780 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCC-TATGC
28019806 TTAGACATGGAATGAACTCCTATGC
1 TTAGACATGGAATGAACTCCTATGC
28019831 CTAAGCCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
TTAGACATGGAATGAACTCCTATGC
Found at i:28020173 original size:26 final size:25
Alignment explanation
Indices: 28020131--28020182 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
28020121 TCGATCCAAT
*
28020131 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
28020156 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
28020182 C
1 C
28020183 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:28020660 original size:26 final size:26
Alignment explanation
Indices: 28020631--28020683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28020621 CTGATCCGAT
28020631 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
28020657 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28020683 C
1 C
28020684 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28021276 original size:26 final size:26
Alignment explanation
Indices: 28021236--28021287 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28021226 CAGTTCGATG
* *
28021236 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAAATCCATATGC
*
28021262 TTAGACTGGGGATGAAATCCATATGC
1 TTAGACTGGGAATGAAATCCATATGC
28021288 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCATATGC
Found at i:28021884 original size:11 final size:11
Alignment explanation
Indices: 28021868--28021896 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
28021858 CTGTTAGGCT
28021868 CTCCGGTAATG
1 CTCCGGTAATG
28021879 CTCCGGTAATG
1 CTCCGGTAATG
28021890 CTCCGGT
1 CTCCGGT
28021897 GATGGTGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.14, C:0.31, G:0.28, T:0.28
Consensus pattern (11 bp):
CTCCGGTAATG
Found at i:28022008 original size:26 final size:26
Alignment explanation
Indices: 28021970--28022022 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28021960 GGCTCAAACT
*
28021970 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28021996 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28022022 C
1 C
28022023 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28022354 original size:26 final size:26
Alignment explanation
Indices: 28022314--28022364 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
28022304 CGGTTAGATC
*
28022314 TTAGACTGCGAATGAACTTCGTATGG
1 TTAGACTGCGAATGAACTCCGTATGG
* *
28022340 TTAGACTGGGTATGAACTCCGTATG
1 TTAGACTGCGAATGAACTCCGTATG
28022365 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGG
Found at i:28022551 original size:26 final size:26
Alignment explanation
Indices: 28022522--28022577 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
28022512 CCGATCTGAT
*
28022522 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28022548 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28022574 CTTA
1 CTTA
28022578 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28023060 original size:26 final size:26
Alignment explanation
Indices: 28023024--28023076 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28023014 CCGGTCTGAT
*
28023024 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
28023050 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28023076 C
1 C
28023077 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28023455 original size:20 final size:20
Alignment explanation
Indices: 28023430--28023499 Score: 70
Period size: 20 Copynumber: 3.2 Consensus size: 20
28023420 ACTCTGTATG
28023430 CTTAGACATGGAATGAACTC
1 CTTAGACATGGAATGAACTC
28023450 CTTAGAC-TAGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
28023470 TGTATGCTTAGACATGGAATGAACTC
1 ------CTTAGACATGGAATGAACTC
28023496 CTTA
1 CTTA
28023500 TGCCTAAGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
19 1 0.02
20 22 0.52
26 18 0.43
27 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (20 bp):
CTTAGACATGGAATGAACTC
Found at i:28023471 original size:46 final size:46
Alignment explanation
Indices: 28023404--28023499 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
28023394 CTGGTCCGAT
28023404 CTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTC
1 CTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTC
28023450 CTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTC
1 CTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTC
28023496 CTTA
1 CTTA
28023500 TGCCTAAGCC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (46 bp):
CTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTC
Found at i:28023502 original size:26 final size:26
Alignment explanation
Indices: 28023404--28023495 Score: 110
Period size: 26 Copynumber: 3.8 Consensus size: 26
28023394 CTGGTCCGAT
28023404 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
28023430 CTTAGAC-ATGGAATGAACTC------
1 CTTAGACTA-GGAATGAACTCTGTATG
28023450 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
28023476 CTTAGAC-ATGGAATGAACTC
1 CTTAGACTA-GGAATGAACTC
28023496 CTTATGCCTA
Statistics
Matches: 57, Mismatches: 0, Indels: 18
0.76 0.00 0.24
Matches are distributed among these distances:
20 18 0.32
21 1 0.02
25 2 0.04
26 36 0.63
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:28024395 original size:26 final size:26
Alignment explanation
Indices: 28024357--28024409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28024347 GGCTCAAACT
28024357 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28024383 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28024409 C
1 C
28024410 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28024706 original size:159 final size:158
Alignment explanation
Indices: 28024382--28024726 Score: 399
Period size: 159 Copynumber: 2.2 Consensus size: 158
28024372 AACTCCATAT
* * *
28024382 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCACTCAGC
* * *
28024447 CAACCGGAAAGGCGGAATGCACAAGTCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCC
66 CAACCGGAAAGGCAGAATGCACAAGTCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCGATCC
* *
28024512 CACTGCCACAACCCTCAATCCGGCTTGG
131 CACTGCCACAACCCTCAATCCGGCTCGA
* * * *
28024540 GCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-GGGCACTCAG
** * * ** *
28024605 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGGATCGGCCCAGTCCCCC-CTGCGTGCTGTCGAT
65 CCAACCGGAAAGGCAGAATGCACAAG-TCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCGAT
** * * * *
28024669 CCTGCTGTCGCAACCCTCAGTCC-GATCCGA
129 CCCACTGCCACAACCCTCAATCCGGCT-CGA
*
28024699 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
28024727 TTAGATTGGG
Statistics
Matches: 155, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
158 52 0.34
159 84 0.54
160 19 0.12
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCACTCAGC
CAACCGGAAAGGCAGAATGCACAAGTCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCGATCC
CACTGCCACAACCCTCAATCCGGCTCGA
Found at i:28024729 original size:26 final size:26
Alignment explanation
Indices: 28024700--28024752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28024690 CCGATCCGAT
28024700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28024726 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28024752 C
1 C
28024753 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28025803 original size:26 final size:26
Alignment explanation
Indices: 28025767--28025819 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28025757 CCGGTCCGAT
28025767 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28025793 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28025819 C
1 C
28025820 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28026528 original size:26 final size:26
Alignment explanation
Indices: 28026490--28026542 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28026480 GGCTCAAACT
*
28026490 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28026516 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28026542 C
1 C
28026543 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28026972 original size:159 final size:157
Alignment explanation
Indices: 28026566--28027072 Score: 479
Period size: 157 Copynumber: 3.2 Consensus size: 157
28026556 CGAAATGAGT
* * ** *
28026566 AAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTACCGATCTCGCTGCCACAACCCTCGATCCG
1 AAGCTGGGGATCGGCCCGGT-CCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCG
** *
28026631 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGC
65 GTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATACGGGC
* * *
28026696 GCTAACCGGCCGAAGAGGCAAAATGCGT
130 GCTAACCAGCCGAAGAGGCAAAATACGC
* * * * * * * * *
28026724 AAG-TCGAGGACCGACCCGGTCCCCTCTACGTGCTGTCGATCCTGTTGTCGCAACCCTCGATCTG
1 AAGCT-GGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCG
** ** * * *
28026788 GTCT-GATCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCATTAAACGAGCATTCGG
65 GT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATACGG
*
28026851 GCGCTAAGCCAGCC-AGAGAGGCATAATACGC
128 GCGCTAA-CCAGCCGA-AGAGGCAAAATACGC
* * * *
28026882 AAGCTGGGGATTGGCCCGGTCCCGCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCG
1 AAGCTGGGGATCGGCCCGGTCCC-CTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCG
* * *
28026947 GTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACG-GCATGCGGGC
65 GTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATACGGGC
* * * * * *
28027011 TCTCACCTGGCC--AGAGGGTAGAATGCGC
130 GCTAACC-AGCCGAAGA-GGCAAAATACGC
* * * *
28027039 AAGTTGGGGATCGGCTCGGTCCCCCCAGCGTGCT
1 AAGCTGGGGATCGGCCCGGTCCCCTCTGCGTGCT
28027073 ACCAATCCTA
Statistics
Matches: 278, Mismatches: 60, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
156 13 0.05
157 122 0.44
158 66 0.24
159 76 0.27
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (157 bp):
AAGCTGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGG
TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATACGGGCG
CTAACCAGCCGAAGAGGCAAAATACGC
Found at i:28027160 original size:26 final size:26
Alignment explanation
Indices: 28027122--28027174 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28027112 CCAGTCTGAT
28027122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28027148 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28027174 C
1 C
28027175 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28027652 original size:26 final size:26
Alignment explanation
Indices: 28027623--28027675 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28027613 CCGATCTGAT
28027623 CTTAGACTGAGAATGAAATCCGTATG
1 CTTAGACTGAGAATGAAATCCGTATG
* * * *
28027649 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAAATCCGTATG
28027675 C
1 C
28027676 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAAATCCGTATG
Found at i:28028028 original size:26 final size:26
Alignment explanation
Indices: 28027990--28028042 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28027980 CCAGTTCGAT
* *
28027990 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
28028016 CTTAGACAT-GGAATGAACGCCGTATG
1 CTTAGAC-TGGGAATGAACGCCGTATG
28028042 C
1 C
28028043 CGAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:28028817 original size:175 final size:175
Alignment explanation
Indices: 28028503--28028830 Score: 388
Period size: 175 Copynumber: 1.9 Consensus size: 175
28028493 TCTGATCTGA
* * * *
28028503 TCTTAGACCGAGAATGAACTCCGTATGCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACC
1 TCTTAGACCGAGAATGAACTCCGTATGATTAGACATGGAATAAACTCCCTAAGCCTAAGCCAACC
* * * * *** * *
28028568 CATGAAATGAACGTGCGGGAGCTTAGTTGGCCCGAGAGGTAAAATGCACAAGCCAGGGATCGGCT
66 CACGAAATCAACGTGCGAGAGCTCAACAGGCCCGAGAGGCAAAATGCACAAGCCAGGGATCGGCC
* *
28028633 TGGTCCCCCTCTACATGCTGTCGATCCTGTTGTCGTGGGTCAAAC
131 CGATCCCCCTCTACATGCTGTCGATCCTGTTGTCGTGGGTCAAAC
* * * *
28028678 TCTTAGACTGGGAATGAACTCTGTATGATTAGACATGGAATAAACTCCGTAAGCCTAAGCCAACC
1 TCTTAGACCGAGAATGAACTCCGTATGATTAGACATGGAATAAACTCCCTAAGCCTAAGCCAACC
* * * * * ** *
28028743 CACGAAA-CAAGCGTGCGAGCGCTCAACAGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGC
66 CACGAAATCAA-CGTGCGAGAGCTCAACAGGCCCGAGAGGCAAAATGCACAAGCCAGGGATCGGC
*
28028807 CCGATCCCCCTCTGCATGCTGTCG
130 CCGATCCCCCTCTACATGCTGTCG
28028831 TCCCCGCTGC
Statistics
Matches: 124, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
174 2 0.02
175 122 0.98
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.21
Consensus pattern (175 bp):
TCTTAGACCGAGAATGAACTCCGTATGATTAGACATGGAATAAACTCCCTAAGCCTAAGCCAACC
CACGAAATCAACGTGCGAGAGCTCAACAGGCCCGAGAGGCAAAATGCACAAGCCAGGGATCGGCC
CGATCCCCCTCTACATGCTGTCGATCCTGTTGTCGTGGGTCAAAC
Found at i:28029012 original size:26 final size:26
Alignment explanation
Indices: 28028971--28029022 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28028961 CCAGTTCAAT
* *
28028971 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28028997 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28029023 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28029182 original size:26 final size:26
Alignment explanation
Indices: 28029140--28029192 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28029130 CCGGTCTAAT
* *
28029140 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28029166 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28029192 C
1 C
28029193 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28030279 original size:158 final size:157
Alignment explanation
Indices: 28029865--28030279 Score: 399
Period size: 158 Copynumber: 2.6 Consensus size: 157
28029855 AACTCCGTAT
* * * *
28029865 GCTTAGAAATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * *
28029930 CAGGC-CGAAGAGGTAGAATGCACAAGCCGGGGACTGGCTCGATCCCCCCTGCCTGCTGTCGATC
66 C-GGCTAG-AGAGGTAGAATGCACAAGCCGGGGATTGGCCCGATCCCCCCTGCATGCTATCGATC
* * *
28029994 CTGTTGCCACAACCCTCGGTCCGATCCGA
129 CCGCTGCCACAACCCTCGGTCCGATCAGA
* * * * ** * * * *
28030023 TCTTAGAC-TGGGAATGAAC-TCTGTTTGTCAAAGTTAACCCATGAAATGAGCGTTCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTC
* * * * * * * ** *
28030086 AGCCGATCGGAGAGGCATAATACGCAAGCTTGGGATTGGCCCGATCCCCCTCTGCATGCTATCGG
64 AGCGGCT-AGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGATCCCCC-CTGCATGCTATCGA
* *
28030151 TCCCGCTGCCACATCCCTCGGTCCG-GCTAG-
127 TCCCGCTGCCACAACCCTCGGTCCGATC-AGA
* *
28030181 GGTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
28030246 TCGGCTAGAGAGGTAGAATGCACAAGCCGGGGAT
66 -CGGCTAGAGAGGTAGAATGCACAAGCCGGGGAT
28030280 CGATTCGGTC
Statistics
Matches: 195, Mismatches: 53, Indels: 18
0.73 0.20 0.07
Matches are distributed among these distances:
157 4 0.02
158 150 0.77
159 41 0.21
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CGGCTAGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGATCCCCCCTGCATGCTATCGATCCC
GCTGCCACAACCCTCGGTCCGATCAGA
Found at i:28030391 original size:26 final size:26
Alignment explanation
Indices: 28030340--28030392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28030330 CTGGTCCGAT
*
28030340 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28030366 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28030392 C
1 C
28030393 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28031115 original size:159 final size:158
Alignment explanation
Indices: 28030740--28031203 Score: 564
Period size: 159 Copynumber: 2.9 Consensus size: 158
28030730 AACTCTGTAT
28030740 GCTTAGA-TAGGGAATGAACT-CGATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTC
1 GCTTAGACTA-GGAATGAACTCCG-TATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTC
* * * *
28030803 AACCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGGTCCCCCCTGCATGCTGTCGAT
64 AGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
* *
28030868 CCTGCTACCGCAACCCTAGGTCCAGTCCGA
129 CCTGCTGCCGCAACCCTCGGTCCAGTCCGA
* * * * * *
28030898 TCTTAGACTAGGACTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCATTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAG
* * * *
28030963 CCGCTCGGATAGGCATAATGCACAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCAGA-
66 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCC-CTGCGTGCTGTC-GAT
* * * *
28031027 -CTCGCTGCCGCAACCCTCGGT-CTGGCTGGG
129 CCT-GCTGCCGCAACCCTCGGTCCAGTC-CGA
* * *
28031057 GCTTAGACGT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CAGGCGTGCGGGCGCTC
1 GCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGA-GCGTACGGGCACTC
* * **
28031120 AGTCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTACCGAT
64 AGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
28031185 CCTGCTGCCGCAACCCTCG
129 CCTGCTGCCGCAACCCTCG
28031204 TTTTGATTCG
Statistics
Matches: 259, Mismatches: 37, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
157 2 0.01
158 125 0.48
159 129 0.50
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCAGTCCGA
Found at i:28031252 original size:26 final size:26
Alignment explanation
Indices: 28031216--28031268 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28031206 TTGATTCGAT
28031216 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28031242 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28031268 C
1 C
28031269 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28031690 original size:693 final size:700
Alignment explanation
Indices: 28030668--28031990 Score: 1637
Period size: 693 Copynumber: 1.9 Consensus size: 700
28030658 TACGTGTTGT
*
28030668 CGATCCTGCTGCTGGTCCTACTGCCTCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAAC
1 CGATCCTGCTGCTGGTCCTACTACCTCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAAC
* *
28030733 TCTGTATGCTTAGATAGGGAATGAACTCGATATGCCTAAGCCAACCCATGAAATGAGCGTACGGG
66 TCCGTATGCTTAGACAGGGAATGAACTCGATATGCCTAAGCCAACCCATGAAA-GAGCGTA--GG
* * *
28030798 CACTCAACCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGGTCCCCCCTGCATGCTG
128 -------CCGAGCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTG
* * *
28030863 TCGATCCTGCTACCGCAACCCTAGGTCCAGTCCGATCTTAGACTAGGACTGAACTCCGTATGCCT
186 TCGATCCTACTACCACAACCCTAGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCT
* * * * * *
28030928 AAGTCAACCCACGAAATGAGCGTACGGGCATTGAGCCGCTCGGATAGGCATAATGCACAAGCTGG
251 AAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCAGCTCGAAGAGGCATAATGCACAAGCCGG
* ** * * * *
28030993 GGATC-GACCCGATCCCCCTCTGCGTGCTGTCAGACTCGCTGCCGCAACCCTCGGTCTGGCTGGG
316 GGATCAG-CCCGATCCCCCTCTACGTGCTACCAGACTCGCTACCACAACCCTCAGTCTGGCTAGG
* * * * *
28031057 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
380 GCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGGGCGCTCAA
* * * *
28031122 TCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
445 CCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCACCCTACGTGCTACCGATCC
* * ** * *
28031187 TGCTGCCGCAACCCTCGTTTTGATTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
510 TACTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * *
28031252 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGATCGGAGA
575 GGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGCGGGCACTCAGTCGATCGGAGA
28031317 GGTTGATCGAAAAGGTAGAATGCGCAAGTTGGGGATCAGCCCGGGCCCCCCTGTGTGCTAC
640 GGTTGATCGAAAAGGTAGAATGCGCAAGTTGGGGATCAGCCCGGGCCCCCCTGTGTGCTAC
* * * *
28031378 CGATCCTGCTGCTGGTCCTACTACCGT-AACCCTCGATCC-GATTTGATCTTAGATTGGGATTGA
1 CGATCCTGCTGCTGGTCCTACTACC-TCAACCCTCAATCCAG-TCTGATCTTAGACTGGGAATGA
*
28031441 ACTCCGTATGCTTAGACATGGAATGAACTCCG-TATGCCTAAGCC-ACCCATG-AA-A-CG-A-G
64 ACTCCGTATGCTTAGACAGGGAATGAACT-CGATATGCCTAAGCCAACCCATGAAAGAGCGTAGG
* * ** **
28031499 -CGAGCGGAGAGGTAAAATGCGTAAGCTGGGGA-CTGACCCGGTCCCCCCTGTGTGCTGTTTATC
128 CCGAGCGGAGAGGCAAAATGCGCAAGCTGGGGATC-GACCCGGTCCCCCCTGCATGCTGTCGATC
* * * *
28031562 CTAC-AGCCACAATCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
192 CTACTA-CCACAACCCTAGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * *
28031626 AACCCATGAAACGAGCGTTCGGGCGCTGAGTAGGTCGAAGAGGCATAATGCACAAGCCGGGGATC
256 AACCCACGAAACGAGCGTACGGGCACTGAGCAGCTCGAAGAGGCATAATGCACAAGCCGGGGATC
* * * * * * *
28031691 AGCTCGGTCCCCCTCTACGTGCTACCGGTCTTGCTACCACAATCCTCAGTCTGGCTATGGCATAG
321 AGCCCGATCCCCCTCTACGTGCTACCAGACTCGCTACCACAACCCTCAGTCTGGCTAGGGCATAG
* *
28031756 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAACCGATC
386 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGGGCGCTCAACCGATC
* ** * * * * * *
28031821 GGAGAGGTAGAATACGCAAGCCGGGGATCGATTCGGTTCACCCTGCGTGCTGCTGATCCTACTGT
451 GGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCACCCTACGTGCTACCGATCCTACTGC
* * ***
28031886 CGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGA
516 CGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
* * *
28031951 ACTCTGTATGCGTAAGTCAACCAACGAAATGAACGTGCGG
581 ACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGCGG
28031991 ACGCTCAGCC
Statistics
Matches: 521, Mismatches: 86, Indels: 29
0.82 0.14 0.05
Matches are distributed among these distances:
692 2 0.00
693 408 0.78
694 1 0.00
701 1 0.00
704 1 0.00
705 2 0.00
706 1 0.00
708 2 0.00
709 8 0.02
710 92 0.18
711 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (700 bp):
CGATCCTGCTGCTGGTCCTACTACCTCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACAGGGAATGAACTCGATATGCCTAAGCCAACCCATGAAAGAGCGTAGGCCG
AGCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTAC
TACCACAACCCTAGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTACGGGCACTGAGCAGCTCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCC
GATCCCCCTCTACGTGCTACCAGACTCGCTACCACAACCCTCAGTCTGGCTAGGGCATAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGGGCGCTCAACCGATCGGAGA
GGCAGAATACGCAAGCCGGGGATCGACCCGATCCACCCTACGTGCTACCGATCCTACTGCCGCAA
CCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCC
GTATGCCTAAGTCAACCAACGAAACGAACGTGCGGGCACTCAGTCGATCGGAGAGGTTGATCGAA
AAGGTAGAATGCGCAAGTTGGGGATCAGCCCGGGCCCCCCTGTGTGCTAC
Found at i:28031945 original size:26 final size:26
Alignment explanation
Indices: 28031909--28031961 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28031899 CCGGTCCAAT
*
28031909 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
28031935 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28031961 C
1 C
28031962 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28032681 original size:26 final size:26
Alignment explanation
Indices: 28032643--28032695 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28032633 GGCTCAAACT
28032643 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
28032669 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
28032695 C
1 C
28032696 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:28033532 original size:170 final size:168
Alignment explanation
Indices: 28033221--28033534 Score: 366
Period size: 170 Copynumber: 1.9 Consensus size: 168
28033211 AACTCCATAT
* * * *
28033221 GCTTAGACATGGATGAACTCCGTATGCCTAATCCAACCCACGAACGAGCGTGCGGGTGCTCAGCA
1 GCTTAGACATGGATGAACTCCATATGCCTAAGCCAACCCACGAACAAGCGTGCGAGTGCTCAGCA
* * * * * * *
28033286 GGCTAGAGAGGCATATGCAACAAATCGAGGATTAGCCCGATCCTCTCTGCGTGCTACCGATCTCG
66 GACCAGAGAGGCAAATGCAACAAACCGAGGATGAGCCCGATCCCCTCTGCGTGCTACCAATCTCG
28033351 CTGCCGGTCCTGCTGCCACAACCCTCGATCCGGCTAGG
131 CTGCCGGTCCTGCTGCCACAACCCTCGATCCGGCTAGG
* *
28033389 GCTTAGATATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGTGCTCAG
1 GCTTAGACATGG-ATGAACTCCATATGCCTAAGCCAACCCACG-AACAAGCGTGCGAGTGCTCAG
* * * * * *
28033454 TC-GACCGGAGAGGCAGAATGC-ACAAGCCGGGGATCGA-CCCGGTCCCCTTTGCGTGCTGCCAA
64 -CAGACCAGAGAGGCA-AATGCAACAAACCGAGGAT-GAGCCCGATCCCCTCTGCGTGCTACCAA
*
28033516 TC-CTGCTGCTGGTCCTGCT
126 TCTC-GCTGCCGGTCCTGCT
28033535 ACTGTAACCC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
168 11 0.09
169 28 0.23
170 75 0.62
171 6 0.05
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (168 bp):
GCTTAGACATGGATGAACTCCATATGCCTAAGCCAACCCACGAACAAGCGTGCGAGTGCTCAGCA
GACCAGAGAGGCAAATGCAACAAACCGAGGATGAGCCCGATCCCCTCTGCGTGCTACCAATCTCG
CTGCCGGTCCTGCTGCCACAACCCTCGATCCGGCTAGG
Found at i:28033598 original size:26 final size:26
Alignment explanation
Indices: 28033560--28033638 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
28033550 TCGGTCCAAT
28033560 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28033586 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28033612 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28033638 C
1 C
28033639 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28034038 original size:159 final size:158
Alignment explanation
Indices: 28033611--28034055 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 158
28033601 AACTTCGTAT
*
28033611 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCGCTCG
* * * * *
28033675 GTCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGG-CTCGATCCCCACTGCGTGCTATCGAT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTCG-TCCCCCCTGCGTGCTGTCGAT
** * ** * *
28033739 CCTGCTGTCGTAACCCTCGGTCCGGTCCAA
129 CCCACTGCCACAACCCTCAGTCCAGTCCAA
* * * * * * *
28033769 ACTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGTGCT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCG
* * * * *
28033832 AGCCGGTCGGAGAGGCATAATGCGCAAGTTGGGGATCGGCC-CGGTCCCCCTCTGCATGCTGTCG
65 -GCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTC-GTCCCCC-CTGCGTGCTGTCG
* ****
28033896 ATCCCACTGCCACAACCCTTAGTCCAGTTGGG
127 ATCCCACTGCCACAACCCTCAGTCCAGTCCAA
* * * *
28033928 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGAGCGCTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCGG
* * * *
28033993 CCGATCGGAGAGGCAGAATGCGCAAACTGAGGATTGGCCTTGTCCCCCCTGCGTGCTGCCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTCGTCCCCCCTGCGTGCTGTCGAT
28034056 ACTGCTACCA
Statistics
Matches: 228, Mismatches: 50, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 102 0.45
159 123 0.54
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCGG
CCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTCGTCCCCCCTGCGTGCTGTCGATCC
CACTGCCACAACCCTCAGTCCAGTCCAA
Found at i:28034128 original size:26 final size:26
Alignment explanation
Indices: 28034087--28034139 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28034077 CCGGTTCGAT
28034087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28034113 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
28034139 C
1 C
28034140 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28038195 original size:26 final size:26
Alignment explanation
Indices: 28038166--28038218 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
28038156 TTGGTCCGAT
28038166 CTTAGAC-TGGGAATGAACTCC-GTATG
1 CTTAGACAT-GGAATGAAC-CCTGTATG
28038192 CTTAGACATGGAATGAACCCTGTATG
1 CTTAGACATGGAATGAACCCTGTATG
28038218 C
1 C
28038219 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACCCTGTATG
Found at i:28039007 original size:26 final size:26
Alignment explanation
Indices: 28038970--28039020 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28038960 GCTTAAACTC
*
28038970 TTAGACTAGGAATGAACTCCGTATGA
1 TTAGACTAGGAATGAACTCCATATGA
28038996 TTAGAC-ATGGAATGAACTCCATATG
1 TTAGACTA-GGAATGAACTCCATATG
28039021 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGA
Found at i:28039315 original size:157 final size:159
Alignment explanation
Indices: 28038996--28039337 Score: 376
Period size: 157 Copynumber: 2.2 Consensus size: 159
28038986 CTCCGTATGA
*
28038996 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGGCAGGCGCTCAGT
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGGCAGGCGCTCAGC
* *
28039061 CGGCTAGAGATGCAGAATGCACAAGCCAGGATCGACCCAGTCCCCCTCTGCGTGCTACCTGTCCC
66 CGGCTAGAGAGGCAGAATGCACAAGCCAGGATCGACCCAGTCCCCCTCTGCGTGCTACCTGTCAC
* ***
28039126 ACTGCCACAACCCTCGTTTCAGCTGGGGC
131 ACTGCCACAACCCTCGTCTCAGCTCAAGC
* * *
28039155 TTAGACATGGAAT-AACTCCATATGCCTAAGCCAACCCATGAAATG-G-GTGCGCGGGCGCTCAG
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATG-GCAGGCGCTCAG
* * * * *
28039217 CC-GATCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGGT-CCCCTTTGCGTGCTACC-GA
65 CCGGCT-AGAGAGGCAGAATGCACAAGCCA-GGATCGACCCAGTCCCCCTCTGCGTGCTACCTG-
* ** * * * *
28039279 TTATGCTGCCGCAACCCTCGATCT-GGTTCAATC
127 TCACACTGCCACAACCCTCG-TCTCAGCTCAAGC
28039312 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
28039338 TTAGACTGGG
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
156 6 0.04
157 79 0.51
158 56 0.36
159 13 0.08
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGGCAGGCGCTCAGC
CGGCTAGAGAGGCAGAATGCACAAGCCAGGATCGACCCAGTCCCCCTCTGCGTGCTACCTGTCAC
ACTGCCACAACCCTCGTCTCAGCTCAAGC
Found at i:28039347 original size:26 final size:26
Alignment explanation
Indices: 28039311--28039363 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28039301 CTGGTTCAAT
28039311 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28039337 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28039363 C
1 C
28039364 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28039962 original size:159 final size:158
Alignment explanation
Indices: 28039545--28040046 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 158
28039535 AACTCCGTAT
* * *
28039545 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * * *
28039610 CC-GACCGGAAAGGTAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCTCCTGCGTGCTATCGATC
66 CCAGA-CGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCTCCTGCGTGCTACCAATC
** * *
28039674 GTACTGTCGCAACCTTCGGTCTGGTCTGA
130 CCACTGTCACAACCCTCGGTCTGGTCTGA
* * * * * ** *
28039703 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTTTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * * ** *
28039767 GTCA-ACTGGAGAGGCATAATGCACAAGCTAAAGATCGGCCCAGTACCC-CTCTGCGTGCTGCCA
65 GCCAGAC-GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGT-CCCTC-CTGCGTGCTACCA
* *
28039830 ATCCCACTG-CAACAACCCTGGGTCTGG-CTGGG
127 ATCCCACTGTC-ACAACCCTCGGTCTGGTCT-GA
* * * *
28039862 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * * * *
28039927 CCAGTCGGAGAGGCAGAATGCGTAAGCCAGGGATC-GACCTGATCCCCCCTGTGTGCTACCGAT-
66 CCAGACGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAG-TCCCTCCTGCGTGCTACCAATC
* * * * * *
28039990 CTATTGTCGCAACCCTCAGTTTGGTCCGA
130 CCACTGTCACAACCCTCGGTCTGGTCTGA
* * *
28040019 TCTTAGA-TTGGGAATAAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
28040047 TTAGGCTAGG
Statistics
Matches: 264, Mismatches: 66, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 41 0.16
158 108 0.41
159 112 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCAGACGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCTCCTGCGTGCTACCAATCC
CACTGTCACAACCCTCGGTCTGGTCTGA
Found at i:28040804 original size:866 final size:868
Alignment explanation
Indices: 28039417--28040977 Score: 1995
Period size: 866 Copynumber: 1.8 Consensus size: 868
28039407 GGAGAGGTCG
* * * * *
28039417 GCCGGAGAGACAGAATGCACAAGCCGGGGATTGACCCGATCCCCCCTACGTGTTGCCGATCCTAC
1 GCCGGAGAGACAGAATACACAAGCCGGGGATTGACCCAATCCCCCCTACATGCTACCGATCCTAC
* * * * * *
28039482 TATTGGTCCTACTATCGCAACCCTCGGTCTGATCTGATGTTAGATTGGGAATGAACTCCGTATGC
66 TACTGGTCCTACTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * **
28039547 TTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAACGAGCGTGCGGGTGCTCAACC
131 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAACC
* * * * * *
28039612 GACCGGAAAGGTAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCTCCTGCGTGCTATCGATCGTA
196 GACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTACATGCTATCGATCGTA
* * * * * *
28039677 CTGTCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACC
261 CTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACC
* ** * ** * * * *
28039742 CATGAAATGAGCGTTTGGGTGCTGAGTCAACTGGAGAGGCATAATGCACAAGCTAAAGATCGGCC
326 CACGAAACAAGCCTGCGGGCGCTGAGCCAACTGGAGAGGCATAATGCACAAGCCAAAGATCGACC
* * ** * *
28039807 CAGTACCCCTCTGCGTGCTGCCAATCCCACTGCAACAACCCTGGGTCTGGCTGGGGCTTAGACAT
391 CAGTACCCCTCTGCATGCTGCCAATCCCACTACAACAACCCTCAGTCCGACTGGGGCTTAGACAT
*
28039872 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAGCCAGTCGGAG
456 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAGCCAATCGGAG
* * * **
28039937 AGGCAGAATGCGTAAGCCAGGGATCGACCTGATCCCCCCTGTGTGCTACCGAT-CTATTGTCGCA
521 AGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACTACCGCA
*
28040001 ACCCTCAGTTTGGTCCGATCTTAGATTGGGAATAAACTCCGTATGCTTAGG-CTAGGGATGAACT
586 ACCCTCAGTTTGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTT-GGACTAGGGATGAACT
* * *
28040065 CCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGCCATAATA
650 CCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACGCTCAGCTGGTCGGAGAGCCATAATA
28040130 CGTAAGCCGGGGATTAGCTCGATCCCTCTCTCCGTGCTACCGATCCTACTATCAGTCTTGCTGTT
715 CGTAAGCCGGGGATTAGCTCGATCCCTCTCTCCGTGCTACCGATCCTACTATCAGTCTTGCTGTT
28040195 GCAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCACCCCACGA
780 GCAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCACCCCACGA
28040260 AATGAGAGTACGAGTGCTTAGTCA
845 AATGAGAGTACGAGTGCTTAGTCA
* * * * * *
28040284 GCCGGAGAGGCAGAATACGCAAG-CTGGGATTGACCCAATCGCCCCTGCATGCTATCGATCCTAC
1 GCCGGAGAGACAGAATACACAAGCCGGGGATTGACCCAATCCCCCCTACATGCTACCGATCCTAC
* * *
28040348 TGCTGGTCCTGCTACCGTAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
66 TACTGGTCCTACTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
28040413 TTGGGCATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATAAGCGTGTGGACGCTCAACT
131 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAACC
* * * * * *
28040478 GACC-AAAGAGGCAGAATGTGCTAGTCGGGGATCGGC-CTGATCCCCCCTACATGCTGTCGATCT
196 GACCGAAA-AGGCAGAATGCGCAAGCCAGGGATCGGCTC-GATCCCCCCTACATGCTATCGATCG
*
28040541 TACTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAA
259 TACTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
* ** ** ***
28040606 CCCACGAAACAAGCCTGCGGGCGCTGTGCC-GGTCGGAGAGGCATAATGCGTAAGCCGGGGATCG
324 CCCACGAAACAAGCCTGCGGGCGCTGAGCCAACT-GGAGAGGCATAATGCACAAGCCAAAGATCG
* * ** * * *
28040670 ACCC-G-ATCCCTCTCTGCATGCTGTCGATCCTGCTACCACAATCCTCAGTCCGACTGGGGGTTA
388 ACCCAGTA-CCC-CTCTGCATGCTGCCAATCCCACTACAACAACCCTCAGTCCGACTGGGGCTTA
* ** *
28040733 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGGGTGCGGGCGCTCAGCCAAT
451 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAGCCAAT
* * * ** * * * ** *
28040798 CGGAGAGGTAGAATGTGTGAGCTGGGGATCGACCCGGTCCCCTCTGCGTGTTGTCGATCCTGCTA
516 CGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACTA
* * ** * * *
28040863 CCGTAACTCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGGGGATG
581 CCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTGGACTAGGGATG
28040928 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACGCTCAGC
646 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACGCTCAGC
28040978 CGACCAGAGA
Statistics
Matches: 574, Mismatches: 113, Indels: 14
0.82 0.16 0.02
Matches are distributed among these distances:
864 1 0.00
865 8 0.01
866 442 0.77
867 123 0.21
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (868 bp):
GCCGGAGAGACAGAATACACAAGCCGGGGATTGACCCAATCCCCCCTACATGCTACCGATCCTAC
TACTGGTCCTACTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAACC
GACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTACATGCTATCGATCGTA
CTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACC
CACGAAACAAGCCTGCGGGCGCTGAGCCAACTGGAGAGGCATAATGCACAAGCCAAAGATCGACC
CAGTACCCCTCTGCATGCTGCCAATCCCACTACAACAACCCTCAGTCCGACTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAGCCAATCGGAG
AGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACTACCGCA
ACCCTCAGTTTGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTGGACTAGGGATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACGCTCAGCTGGTCGGAGAGCCATAATAC
GTAAGCCGGGGATTAGCTCGATCCCTCTCTCCGTGCTACCGATCCTACTATCAGTCTTGCTGTTG
CAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCACCCCACGAA
ATGAGAGTACGAGTGCTTAGTCA
Found at i:28041920 original size:159 final size:158
Alignment explanation
Indices: 28041631--28041937 Score: 363
Period size: 159 Copynumber: 1.9 Consensus size: 158
28041621 AACTCCGTAT
* *
28041631 GCTTAGACACGGAATGAACTCCATATCCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAC
1 GCTTAGACACGGAATGAACTCCATATCCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAC
* * * * *
28041696 CAGTCGAGAGGCAGAATGCGTAAGTCGAGGATCGACACCGGTCCGCCTCTGCATGGTGGCAGATC
66 CAGTCGAGAGGCAGAATGCGCAAGCCGAGGATCGACACCGGTCCCCCTCTG-ATGCTGACAGATC
28041761 CCGCTACCACAACCCTCGGTTCGGCTAGG
130 CCGCTACCACAACCCTCGGTTCGGCTAGG
* * * *
28041790 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGGCGCTC
1 GCTTAGACACGGAATGAACTCCATATCCCTAAGCCAACCCACGAAACGA-GCGTGC-GGGCACTC
* *
28041854 AACCGGTCGGAGAGGCAGAATGCGCAAGCCG-GGAATCGGC-CCGGTCCCCCCTCTG-TGCT-AC
64 -ACCAGTC-GAGAGGCAGAATGCGCAAGCCGAGG-ATCGACACCGGT-CCCCCTCTGATGCTGAC
* * **
28041915 CGATCCTGCTGTCACAACCCTCG
125 AGATCCCGCTACCACAACCCTCG
28041938 ACTTGGTTTG
Statistics
Matches: 125, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
158 1 0.01
159 68 0.54
160 10 0.08
161 13 0.10
162 33 0.26
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.16
Consensus pattern (158 bp):
GCTTAGACACGGAATGAACTCCATATCCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAC
CAGTCGAGAGGCAGAATGCGCAAGCCGAGGATCGACACCGGTCCCCCTCTGATGCTGACAGATCC
CGCTACCACAACCCTCGGTTCGGCTAGG
Done.