Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 297 of 402
Found at i:28118212 original size:26 final size:26
Alignment explanation
Indices: 28118176--28118228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28118166 CCGATCCAAT
*
28118176 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28118202 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28118228 C
1 C
28118229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28118594 original size:26 final size:26
Alignment explanation
Indices: 28118555--28118606 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28118545 TCCGGTCCGA
*
28118555 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
28118581 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
28118607 GCCTAAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:28118929 original size:159 final size:158
Alignment explanation
Indices: 28118582--28119026 Score: 434
Period size: 158 Copynumber: 2.8 Consensus size: 158
28118572 ACTCTGTATT
* *
28118582 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCATGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCATGCGAGCGATCAGC
** ** * * *
28118647 TGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACTCGATCCCCCCTGCGTGCTGTCGATCCT
66 CAACCAAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCC
** *
28118712 ACTACCGTAACCCTCAGTCCCATCTGAT
131 ACTACCACAACCCTCAGTCCCATCTGAG
* * * *
28118740 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAATCAACCCACGAAGCGAG-AGTGCGGGCGATGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCA-TGCGAGCGATCA
* * * *
28118803 GCCAACCAAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCTCTCTGCGTGCTGTCGAT
64 GCCAACCAAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCC-CCCTGCGTGCTGTCGAT
* * * *
28118868 CCCGCTACCACAACCCTCGGTCCGA-CTGGGG
128 CCCACTACCACAACCCTCAGTCCCATCT-GAG
** * * * * * *
28118899 CTTAGACATTTAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCG-GGGACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCATGCGAGCGA-TCAG
** * * * * * *
28118963 -CTGCCAGAA-AGGTATAATGCGTAAGCCGGGGATCGACCCGATCTCCCCTGCGTGCTATCGATC
65 CCAACCA-AAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATC
28119026 C
129 C
28119027 TGCTGCTGCA
Statistics
Matches: 234, Mismatches: 45, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
157 19 0.08
158 130 0.56
159 84 0.36
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCATGCGAGCGATCAGC
CAACCAAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCC
ACTACCACAACCCTCAGTCCCATCTGAG
Found at i:28119789 original size:26 final size:26
Alignment explanation
Indices: 28119751--28119803 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28119741 GGCTCAAAAT
28119751 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28119777 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28119803 C
1 C
28119804 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28120130 original size:26 final size:26
Alignment explanation
Indices: 28120094--28120146 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28120084 CCGATTTGAT
28120094 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
28120120 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
28120146 C
1 C
28120147 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:28120675 original size:159 final size:160
Alignment explanation
Indices: 28120257--28120684 Score: 443
Period size: 159 Copynumber: 2.7 Consensus size: 160
28120247 GTCGGTCCTA
* * *
28120257 CTACCACAACCCTTGG-TCTGGCTGGGGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAAC
1 CTACCACAACCCTCGGTTCAGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
28120321 CTATGAAACGAGCGTGCGGGTGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
66 CCATGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATACGCAAACCAAGGATCGAC
* * *
28120386 CCGATCCCCCCTTGTGTGCTGTAAATCCTG
131 CCGATCCCCCCTTGCGTGCTATAAATCCCG
* * * * ** *
28120416 CTACCGCAACCCTCAGTCCAGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAA
1 CTACCACAACCCTCGGTTCAGGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
28120479 CCCATGAAACGAGCGTGCGGGCACTGAGCCGATCGGAGAGGCATAATACGTAAACCAAGGATCGG
65 CCCATGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATACGCAAACCAAGGATCGA
** ***
28120544 CCCGAT-CCCTTTCTGCGTGCTATTGGTCCCG
130 CCCGATCCCCCCT-TGCGTGCTATAAATCCCG
* * *
28120575 CTGCCACAACCCTCGGTTC-GGCTGGGGCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAAC
1 CTACCACAACCCTCGGTTCAGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * * *
28120639 CCACAAAACAAACTTGCGGGTGCTCAGTCGACCGGAGAGGTAGAAT
66 CCATGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAAT
28120685 GCTCAAGCTA
Statistics
Matches: 213, Mismatches: 51, Indels: 10
0.78 0.19 0.04
Matches are distributed among these distances:
158 8 0.04
159 200 0.94
160 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (160 bp):
CTACCACAACCCTCGGTTCAGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATACGCAAACCAAGGATCGAC
CCGATCCCCCCTTGCGTGCTATAAATCCCG
Found at i:28120798 original size:26 final size:26
Alignment explanation
Indices: 28120762--28120814 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28120752 TTGATCTGAT
28120762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
28120788 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28120814 C
1 C
28120815 CGGGTGCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28121058 original size:662 final size:661
Alignment explanation
Indices: 28119777--28121059 Score: 1625
Period size: 666 Copynumber: 1.9 Consensus size: 661
28119767 ACTCCGTATG
* * ** *
28119777 CTTAGACATGGAATGAACTTCGTATGCCTAAGCTAACCTACGAAACAAGCGTGCGGGCGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCGTGCGGGCACTCAGC
* ** ** *
28119842 CGGTCGGAGAGGCATAATGTGCAAAACGGGGATCGGCCCGATCCTCCTCTACATGCTGCCGGTCC
66 CGATCGGAGAGGCATAATACGCAAAACAAGGATCGGCCCGATCCTCCTCTACATGCTACCGGTCC
* *
28119907 TGCTGCCACAACCCTCGTTCCAGCTGGGGCTTCGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGTTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** *
28119972 CCCACGAAACAGGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGAGCAAGCTGGGGATCGG
196 CCCACAAAACAAACGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGAGCAAGCTGGGGATCAG
* * * * * *
28120037 CCCGATCCCCCATGTGTGCTATCGATGCTGCTACCGCAACACTCGATCCGATTTGATCTTAGACT
261 CCCGATCCCCCATGTGTGCTACCAATCCTACTACCGCAAAACTCGATCCGATCTGATCTTAGACT
* *
28120102 GGGAATGAACTCTGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATG
326 GGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCGAAGTCAACCCACG--A-G
* * * *
28120167 AGCGTGCGGGTGCTCCTGAGAGGCCTAATGCATAAGCCGAGGATCAGCCCGGTCCCCCTCTACAT
388 AGAGTGC--GTGCGCCTGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCCCCCTCTACAT
* ** *
28120232 GTTGTTGATCCCGCTGTCGGTCCTACTACCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAA
451 GCTGTTGATCCCGCTACCGGTCCTACTACCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAA
* * * * *
28120297 TTAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGTGCTCAACCGATCGGAGAGGC
516 TGAACACCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGC
*
28120362 AGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTTGTGTGCTGTAAATCCTGCTACCGCAACC
581 AGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTTGTGTGCTGTAAATCCTGCTACCGCAACC
28120427 CTCAGTCCAGTCTGAT
646 CTCAGTCCAGTCTGAT
* * *
28120443 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-TCAACCCATGAAACGAGCGTGCGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACAAGCGTGCGGGCACTCA
* * * * * **
28120506 GCCGATCGGAGAGGCATAATACGTAAACCAAGGATCGGCCCGATCC-CTTTCTGCGTGCTATTGG
64 GCCGATCGGAGAGGCATAATACGCAAAACAAGGATCGGCCCGATCCTC-CTCTACATGCTACCGG
* *
28120570 TCCCGCTGCCACAACCCTCGGTT-CGGCTGGGGCTTAGACATGGACTGAACTCCCTATGCCTAAG
128 TCCCGCTGCCACAACCCTC-GTTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * **
28120634 CCAACCCACAAAACAAACTTGCGGGTGCTCAGTCGACCGGAGAGGTAGAATGCTCAAGCTAGGGG
192 CCAACCCACAAAACAAACGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGAGCAAGCT-GGGG
* * * * **
28120699 ATCAGCCC-AGTCCCCCCCTGCT-TGCTGCCAATCCTACTATCGCAAAACTCGGTTTGATCTGAT
256 ATCAGCCCGA-T-CCCCCATG-TGTGCTACCAATCCTACTACCGCAAAACTCGATCCGATCTGAT
** *
28120762 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCGGGTGCTCAGC
318 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCC-GAAG-TCAAC
* *
28120827 CGACTG-GAGAG-GC-TG-GCCTGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCT
381 CCAC-GAGAGAGTGCGTGCGCCTGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCCCCCT
* * *
28120888 TTACGTGCTGTTGATCCCGCTACCGGTCCTACTACCACAACCCTTGGTCTGACTTGGGCTTAGAC
445 CTACATGCTGTTGATCCCGCTACCGGTCCTACTACCACAACCCTTGGTCTGACTGGGGCTTAGAC
*** *
28120953 ATGGAATGAACACCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCGGTCGGTCGG
510 ATGGAATGAACACCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGATCGG
* * * * *
28121018 AGAGGTAGAATGCATAAGCTGGGGATC-AGCCCGGTCCCCCCT
575 AGAGGCAGAATGCACAAGCCGAGGATCGA-CCCGATCCCCCCT
28121060 GCATGCTGTC
Statistics
Matches: 526, Mismatches: 79, Indels: 28
0.83 0.12 0.04
Matches are distributed among these distances:
661 1 0.00
662 190 0.36
663 2 0.00
665 3 0.01
666 211 0.40
667 19 0.04
668 90 0.17
669 2 0.00
670 7 0.01
671 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (661 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCGTGCGGGCACTCAGC
CGATCGGAGAGGCATAATACGCAAAACAAGGATCGGCCCGATCCTCCTCTACATGCTACCGGTCC
CGCTGCCACAACCCTCGTTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACAAACGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGAGCAAGCTGGGGATCAG
CCCGATCCCCCATGTGTGCTACCAATCCTACTACCGCAAAACTCGATCCGATCTGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCGAAGTCAACCCACGAGAGA
GTGCGTGCGCCTGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTGT
TGATCCCGCTACCGGTCCTACTACCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAAC
ACCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAAT
GCACAAGCCGAGGATCGACCCGATCCCCCCTTGTGTGCTGTAAATCCTGCTACCGCAACCCTCAG
TCCAGTCTGAT
Found at i:28121623 original size:158 final size:156
Alignment explanation
Indices: 28121142--28121643 Score: 475
Period size: 158 Copynumber: 3.2 Consensus size: 156
28121132 ACTCCGTATG
* *
28121142 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
28121206 CCGGTCGGAGAGGCAAAATGCGTAAGCTGGGGATTGACCCGGTCCCCCCTTGTGTGCTATCGATC
65 CCGGCCGGAGAGGCAAAATGCGTAAGC-CGGGATTGGCCCGATCCCCCC-TG-GTGCTGTCGATC
* * *
28121271 CTGCTACCGTAACCCTTGGTCCG-TTTCGAT
127 CTGCTGCCG-AACCCTTGGTCTGATCTCGAT
* * *
28121301 CTTAGACTGGGAATGAACTCTGTATGCCTAAG-TCAACCCATGAAATGAGCGTGC-GGTCGCTGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGCGTGCGGGT-GCTCA
** * * * * * *
28121364 GCCAACC-GAGAGGCATAATGCGCAAACCAGGCATTAGCCC-AGTCCCCCTCTAGGTGCTGTCGG
64 GCCGGCCGGAGAGGCAAAATGCGTAAGCC-GGGATTGGCCCGA-TCCCCC-CT-GGTGCTGTCGA
* * * **
28121427 TCCCGCTGCCAGAACCCTCGGTCTGA-CTGGGG
125 TCCTGCTGCC-GAACCCTTGGTCTGATCTCGAT
* *
28121459 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAAC-AGGCGTGCGGGTGTTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGA-GCGTGCGGGTGCTCA
*
28121522 GCCGGCCGGAGAGGCAGAATGCGTAAGCCGGTGATTGGCCCGATCCCCCCTGCGTGCTGTCGATC
64 GCCGGCCGGAGAGGCAAAATGCGTAAGCCGG-GATTGGCCCGATCCCCCCTG-GTGCTGTCGATC
* *
28121587 CTGCTGTCGCAACCTTTGGTCTGATCT-GAT
127 CTGCTGCCG-AACCCTTGGTCTGATCTCGAT
* * *
28121617 CATAGACTGGGAGTGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
28121644 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 48, Indels: 41
0.76 0.13 0.11
Matches are distributed among these distances:
157 4 0.01
158 174 0.63
159 96 0.35
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGGCCGGAGAGGCAAAATGCGTAAGCCGGGATTGGCCCGATCCCCCCTGGTGCTGTCGATCCTGC
TGCCGAACCCTTGGTCTGATCTCGAT
Found at i:28122378 original size:26 final size:26
Alignment explanation
Indices: 28122340--28122392 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28122330 GGCTCAAAAT
*
28122340 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28122366 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28122392 C
1 C
28122393 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28122720 original size:159 final size:157
Alignment explanation
Indices: 28122365--28122867 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 157
28122355 AACTGCGTAT
* * *
28122365 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
* * * * * *
28122430 TCGGTTA-GAGAGGCAGAATACGCAAGTCAGGGATCAGCTCGGTGCCCCCTGCGTGCTGTCGATC
66 -CCGATAGGAGAGGTA-AATGCGCAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATC
* * * * *
28122494 CTACTACTGTAACCCTTGGTTCGGTCTGA
129 CCACTACTATAACCCTCGGTCCAGTCTGA
* * * * * *
28122523 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCCTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCA
* *
28122587 GCCGATAGGCGAGGTATAATGCGCAAG-CAGAGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCGG
65 GCCGATAGGAGAGGTA-AATGCGCAAGCCAG-GGATCAGCTCGGTCCCCC-CTGCGTGCTGTCGA
** ** * *
28122651 TCCCGTTGTTATAGCCCTCGGTCCAG-CTGGG
127 TCCCACTACTATAACCCTCGGTCCAGTCT-GA
* * *
28122682 GCTTAGACATGGAATGAACTCCTTATGCCAAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
* * * * *
28122747 CCGATCGGAGAGGTCAAATGCGCAAGCCAGGGATC-GACCCGATCCCCCCTGTGTGCTGTCGATT
66 CCGATAGGAGAGGT-AAATGCGCAAGCCAGGGATCAG-CTCGGTCCCCCCTGCGTGCTGTCGATC
** * * * * *
28122811 CTGCTGCCACAACCCTCGGTCTAGTCCGA
129 CCACTACTATAACCCTCGGTCCAGTCTGA
* * *
28122840 TCTTAGAC-TGGGAATGAAATCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
28122868 TTAGACAGGG
Statistics
Matches: 278, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 9 0.03
158 143 0.51
159 121 0.44
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
CCGATAGGAGAGGTAAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCCC
ACTACTATAACCCTCGGTCCAGTCTGA
Found at i:28122882 original size:26 final size:26
Alignment explanation
Indices: 28122841--28122893 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28122831 CTAGTCCGAT
*
28122841 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACAGGGAATGAAATCTGTATG
* *
28122867 CTTAGACAGGGGATGAACTCTGTATG
1 CTTAGACAGGGAATGAAATCTGTATG
28122893 C
1 C
28122894 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAAATCTGTATG
Found at i:28123383 original size:26 final size:26
Alignment explanation
Indices: 28123347--28123399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28123337 CCGGTCTGAT
28123347 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28123373 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28123399 C
1 C
28123400 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28123454 original size:13 final size:13
Alignment explanation
Indices: 28123436--28123460 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28123426 CGGGCGCTTA
28123436 GACCGGAGAGGCC
1 GACCGGAGAGGCC
28123449 GACCGGAGAGGC
1 GACCGGAGAGGC
28123461 ATAATACGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
GACCGGAGAGGCC
Found at i:28124166 original size:26 final size:25
Alignment explanation
Indices: 28124127--28124176 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
28124117 AGTCTGATCT
28124127 TAGACTGGAATGAACTCCGTATGCA
1 TAGACTGGAATGAACTCCGTATGCA
*
28124152 TAGACTGTGAATGAACTCTGTATGC
1 TAGACTG-GAATGAACTCCGTATGC
28124177 CTCAGCTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (25 bp):
TAGACTGGAATGAACTCCGTATGCA
Found at i:28124450 original size:158 final size:159
Alignment explanation
Indices: 28124152--28124829 Score: 498
Period size: 158 Copynumber: 4.3 Consensus size: 159
28124142 TCCGTATGCA
* * * * * ** *
28124152 TAGAC-TGTGAATGAACTCTGTATGCCTCAGCTAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
1 TAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTACGGGCACTGAGCC
** ** * * * * * * *
28124216 GGTCGGAGAGGTAGAAAGCACAAGCCGAGGA-CTAGCTCGGTCCCCC-CTGCGTGCTGTCGATCC
65 AATCAAAGAGGCATAATGCGCAAGCCGGGGATC-GGCTCGGTCCCCCTATGCGTGCTGTCGATCC
* * *
28124279 TGTTGCCACAACCCTCAGTCCGGTCT-GATCT
129 -GCTACCACAACCCTCAGTCCGGTCTGGAGCT
* ** * * * * *
28124310 TAGAC-TGGGAATGAACTTCGTATGCCTAAGTTAACCCATGAAACTAGTGTTCGAGCGCTAAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTACGGGCACTGAGCC
* * * * * *
28124374 AATCTAAGAGGCAGAATGCGCAAGTCGGGGATTGACTCGGTCCCCCT-TGTGTGCTGTCGATCCG
65 AATCAAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTATGCGTGCTGTCGATCCG
* ** * * *
28124438 ACTACCATAACCCTTGGTCTGATCT-GATCT
130 -CTACCACAACCCTCAGTCCGGTCTGGAGCT
* * * * *
28124468 TAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCTATG-AATTGAGCGTGCGGGCACTGAG-
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACT-AGCGTACGGGCACTGAGC
** * * * * * *
28124530 CTGTCCGAAGAGGCATAATGCGCAAGCCGAGTATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
64 CAAT-CAAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTATGCGTGCTGTCGATC
*
28124595 TCGCTACCACAACCCTCAGTCCGGT-TGGGGCT
128 -CGCTACCACAACCCTCAGTCCGGTCTGGAGCT
* * ** * *
28124627 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTGATCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTACGGGCACTGAGCCA
* ** * ** *
28124692 ATCAAAGAGGCATAATGCGCAAGCCGGGGACCGGCTCGGTCCCCCTATATGTGTTACCGATCCCA
66 ATCAAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTATGCGTGCTGTCGAT-CCG
* * * *
28124757 CTGCCACAACCCTCGGTCC-GACTGGGGCT
130 CTACCACAACCCTCAGTCCGGTCTGGAGCT
* * *
28124786 CAGACATGGAATAAACTCCGTATGCCTAAGCTAACCCATGAAAC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
28124830 GGGCGTGCAG
Statistics
Matches: 414, Mismatches: 92, Indels: 27
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.01
158 208 0.50
159 192 0.46
160 8 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTACGGGCACTGAGCCA
ATCAAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTATGCGTGCTGTCGATCCGC
TACCACAACCCTCAGTCCGGTCTGGAGCT
Found at i:28124651 original size:159 final size:157
Alignment explanation
Indices: 28124152--28124902 Score: 514
Period size: 159 Copynumber: 4.7 Consensus size: 157
28124142 TCCGTATGCA
* * * ** *
28124152 TAGAC-TGTGAATGAACTCTGTATGCCTCAGCTAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
1 TAGACATG-GAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGGGCGTGCGGGCACTGAGCC
* * * * * * * * **
28124216 GGTCGGAGAGGTAGAAAGCACAAGCCGAGGA-CTAGCTCGGTCCCCC-CTGCGTGCTGTCGATCC
64 -GTCGAAGAGGCATAATGCGCAAGCCGGGGATC-GGCCCGGTCCCCCTCTGCGTGCTACCGATCC
*** * * **
28124279 TGTTGCCACAACCCTCAGTCCGGTCT-GATCT
127 CACTACCACAACCCTCAGTCC-GACTGGGGCT
* * ** * * * * *
28124310 TAGAC-TGGGAATGAACTTCGTATGCCTAAGTTAACCCATGAAACTAGTGTTCGAGCGCTAAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGGGCGTGCGGGCACTGAGCC
* * * * * * * * ** *
28124374 AATCTAAGAGGCAGAATGCGCAAGTCGGGGATTGACTCGGTCCCCCT-TGTGTGCTGTCGATCCG
64 -GTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCC
* ** * **
28124438 ACTACCATAACCCTTGGTCTGATCT-GATCT
128 ACTACCACAACCCTCAGTCCGA-CTGGGGCT
* * ** * *
28124468 TAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCTATGAATTGAGCGTGCGGGCACTGAGCT
1 TAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGGGCGTGCGGGCACTGAGCC
* * ** * *
28124532 GTCCGAAGAGGCATAATGCGCAAGCCGAGTATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCTC
64 GT-CGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCC
* **
28124597 GCTACCACAACCCTCAGTCCGGTTGGGGCT
128 ACTACCACAACCCTCAGTCCGACTGGGGCT
* * * *
28124627 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTGATCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGGGCGTGCGGGCACTGAGCCG
* * * * ** *
28124692 ATCAAAGAGGCATAATGCGCAAGCCGGGGACCGGCTCGGTCCCCCTATATGTGTTACCGATCCCA
65 -TCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCCA
* *
28124757 CTGCCACAACCCTCGGTCCGACTGGGGCT
129 CTACCACAACCCTCAGTCCGACTGGGGCT
* * * *
28124786 CAGACATGGAATAAACTCCGTATGCCTAAGCTAACCCATGAAACGGGCGTGCAGGCA-AGAGGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGGGCGTGCGGGCACTGA-GCC
* * * *
28124850 GGTCGAAGAGGCAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCC-CTGCGTG
64 -GTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTG
28124903 TTGTTGATCC
Statistics
Matches: 466, Mismatches: 114, Indels: 26
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.00
158 214 0.46
159 247 0.53
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGGGCGTGCGGGCACTGAGCCGT
CGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCCACT
ACCACAACCCTCAGTCCGACTGGGGCT
Found at i:28124902 original size:317 final size:315
Alignment explanation
Indices: 28124153--28124914 Score: 768
Period size: 317 Copynumber: 2.4 Consensus size: 315
28124143 CCGTATGCAT
* * * *
28124153 AGACTGTGAATGAACTCTGTATGCCTCAGCTAACCCATGAAACGAGCGTGCGGGTGC-TCAGCCG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGC-GG-GCATGAGCCG
* * * * *
28124217 GTCGGAGAGGTAGAAAGCACAAGCCGAGGA-CTAGCTCGGTCCCCCCTGCGTGCTGTCGATCCTG
64 GTCGAAGAGGCAGAATGCGCAAGCCGAGGATC-AGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
* * * * * **
28124281 TTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTTAACC
128 CTACCACAACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * **
28124346 CATGAAACTAGTGTTCGAGCGCTAAGCCAATCTAAGAGGCAGAATGCGCAAGTCGGGGATTGACT
193 CACGAAACGAGCGTACGAGCACTAAGCCAATCAAAGAGGCAGAATGCGCAAGCCGGGGACCGACT
* ** * * * * * *
28124411 CGGTCCCCCTTGTGTGCTGTCGATCCGACTACCATAACCCTTGGTCTGATCTGATCTT
258 CGGTCCCCCTTATGTGCTACCGATCCCACTACCACAACCCTCGGTCCGATCTGAGCTC
* * ** *
28124469 AGACTGGGAATGAACTCCGTATGCATAAG-TCAACCTATGAATTGAGCGTGCGGGCACTGAG-CT
1 AGACTGGGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGCGTGCGGGCA-TGAGCCG
* * * *
28124532 GTCCGAAGAGGCATAATGCGCAAGCCGAGTATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGT-CT
64 GT-CGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATCCT
*
28124596 CGCTACCACAACCCTCAGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
127 -GCTACCACAACCCTCAGTCCGGTCT-GAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
28124659 AACCCACGAAACGGGCGTACGGGCACTGATCCGATCAAAGAGGCATAATGCGCAAGCCGGGGACC
189 AACCCACGAAACGAGCGTACGAGCACTAAGCCAATCAAAGAGGCAGAATGCGCAAGCCGGGGACC
* * * *
28124724 GGCTCGGTCCCCCTATATGTGTTACCGATCCCACTGCCACAACCCTCGGTCCGA-CTGGGGCTC
254 GACTCGGTCCCCCT-TATGTGCTACCGATCCCACTACCACAACCCTCGGTCCGATCT-GAGCTC
* * * *
28124787 AGACAT-GGAATAAACTCCGTATGCCTAAGCTAACCCATGAAACGGGCGTGCAGGCAAGAGGCCG
1 AGAC-TGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCATGA-GCCG
* * * * *
28124851 GTCGAAGAGGCAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGTTGTTGATCCTG
64 GTCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
28124915 ATGCTAGTCC
Statistics
Matches: 358, Mismatches: 72, Indels: 31
0.78 0.16 0.07
Matches are distributed among these distances:
314 2 0.01
315 6 0.02
316 81 0.23
317 145 0.41
318 119 0.33
319 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (315 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCATGAGCCGGT
CGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTA
CCACAACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGAGCACTAAGCCAATCAAAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGG
TCCCCCTTATGTGCTACCGATCCCACTACCACAACCCTCGGTCCGATCTGAGCTC
Found at i:28125167 original size:26 final size:26
Alignment explanation
Indices: 28125138--28125190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28125128 TCGGTCCGAT
28125138 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28125164 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28125190 C
1 C
28125191 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28125511 original size:26 final size:26
Alignment explanation
Indices: 28125475--28125525 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
28125465 AGTCCGATCA
*
28125475 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
28125501 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
28125526 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:28125852 original size:26 final size:25
Alignment explanation
Indices: 28125816--28125867 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
28125806 TCGATCTGAT
*
28125816 CTTAGACTGGGAATGCACTACGTATG
1 CTTAGACTGGG-ATGAACTACGTATG
* *
28125842 CTTAGATTGGGATGAACTCCGTATG
1 CTTAGACTGGGATGAACTACGTATG
28125867 C
1 C
28125868 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTACGTATG
Found at i:28126223 original size:25 final size:26
Alignment explanation
Indices: 28126195--28126246 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28126185 CCGGTCCGAT
*
28126195 CTTAGAC-TTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
28126220 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28126246 C
1 C
28126247 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28126420 original size:26 final size:26
Alignment explanation
Indices: 28126378--28126430 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28126368 CTGGCCCGAT
28126378 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28126404 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28126430 C
1 C
28126431 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28126564 original size:184 final size:183
Alignment explanation
Indices: 28126190--28126588 Score: 496
Period size: 184 Copynumber: 2.2 Consensus size: 183
28126180 TCGATCCGGT
* *
28126190 CCGATCTTAGACTTGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
1 CCGATCTTAGACTTGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
28126255 ACCCAAGAAACAATCATGCAGGCACTCAGCCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGACCG
66 ACCCAAGAAACAAGCACGCAGGCACTCAACCGGTCGGAAAGGCAGAATGCGCAAGTCGGGGACCA
* * * *
28126320 ACCCGGTCCCCCCTACGTGATGTCGATCCTGTTGCTGCAACCGTTGATCTGGC
131 ACCCGGTCCCCCCTACGTGATGTCGATCCTGCTGCTGCAACCCTCGATATGGC
* *
28126373 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGATTGAACTCCGTATGCCTAAGCC
1 CCGATCTTAGACT-TGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * *
28126438 AACCCATGAAACGAGCGCGCAGGCGCTTAACCGGTCGGAAAGGCAGAATTGC-CAAG-CTGGGGA
65 AACCCAAGAAACAAGCACGCAGGCACTCAACCGGTCGGAAAGGCAGAA-TGCGCAAGTC-GGGGA
* * * * * *
28126501 TCAACCTGGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGTAACCCTCGGTATGGT
128 CCAACCCGGTCCCCCCTACGTGATGTCGATCCTGCTGCTGCAACCCTCGATATGGC
* * *
28126557 TCGATCTTAGAATATGAATGAACTACATATGC
1 CCGATCTTAGACT-TGAATGAACTCCATATGC
28126589 CTAAGTTAAC
Statistics
Matches: 183, Mismatches: 30, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
183 14 0.08
184 166 0.91
185 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (183 bp):
CCGATCTTAGACTTGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCAAGAAACAAGCACGCAGGCACTCAACCGGTCGGAAAGGCAGAATGCGCAAGTCGGGGACCA
ACCCGGTCCCCCCTACGTGATGTCGATCCTGCTGCTGCAACCCTCGATATGGC
Found at i:28126929 original size:26 final size:26
Alignment explanation
Indices: 28126879--28126931 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28126869 CCGATCCGAT
**
28126879 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28126905 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
28126931 C
1 C
28126932 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28127624 original size:26 final size:26
Alignment explanation
Indices: 28127586--28127638 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28127576 GGCTCAAAAT
28127586 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28127612 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28127638 C
1 C
28127639 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28128117 original size:26 final size:26
Alignment explanation
Indices: 28128088--28128139 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
28128078 CGATCCGATT
* * *
28128088 TTAGATTGGGTATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCATATGC
*
28128114 TTAGGCTGGGGATGAACTCCATATGC
1 TTAGACTGGGGATGAACTCCATATGC
28128140 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTCCATATGC
Found at i:28129014 original size:316 final size:315
Alignment explanation
Indices: 28128453--28129121 Score: 817
Period size: 316 Copynumber: 2.1 Consensus size: 315
28128443 TAACCCTTTG
*
28128453 TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG-CTAACTCAACAAACGAAACAAGCGTAC
1 TCTGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCCTAACTCAACAAACGAAACAAGCGTAC
* * * * * *
28128517 AGGCACTGAGCTGATCGGAGAGGCATAATGCGCAAGTTGGGGATTCGCCCGGTCCCCTCTGCGTG
65 AGGCACTGAGCTGACCGGAGAGGCATAATGAGCAAGTCGAGGATTCGCCCGATCCCCTCTGCGAG
* * *
28128582 CCGCCGGTCTCGCTGCCACAATCCGTGGTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGC
130 CCGCCGGTCCCGCTGCCACAATCCCTGGTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * ** * * *
28128647 CTAAGCTAACCCACGAAATGGGTGTGTGGGTGCTCAGCCAGCCAAAGAGGCAAAATGCGCAAGCC
195 CTAAGCCAACCAACGAAACAGGCGTGCGGGCGCTCAGCCAGCCAAAGAGGCAAAATGCGCAAGCC
* * *
28128712 G-GGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTATCGCAACCCTCGA
260 GAGGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGA
* * * ** ** *
28128767 TCTGGTCCGATCTAAGACGGGGAATGAACCTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
1 TCTGGTCCGATCTTAGACTGGGAATGAA-CTCGTATGCCTAACTCAACAAACGAAACAAGCGTAC
* ** * *
28128832 GGGCGTTGAGC-GGCCGGAGAGGCATAATGAGCAAGTCGAGGA-TCGGCCCGATCCCCCTCTGTG
65 AGGCACTGAGCTGACCGGAGAGGCATAATGAGCAAGTCGAGGATTC-GCCCGAT-CCCCTCTGCG
*
28128895 AGCTGCCGGTCCCGCTGCCACAA-CCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
128 AGCCGCCGGTCCCGCTGCCACAATCCCT-GGT-CGGCTGGGGCTTAGACATGGAATGAACTCCCT
* * ** *
28128959 ATGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCA
191 ATGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCGCTCAGCCAGCCAAAGAGGCAAAATGCGCA
* ** * *
28129024 AGCCGAGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCCTGCTGCCGTAACCCTCGA
256 AGCCGAGGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGA
** *
28129084 TCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGC
1 TCTGGTCCGATCTTAGACTGGGAATGAACTC-GTATGC
28129122 TTAGACTGGT
Statistics
Matches: 298, Mismatches: 49, Indels: 13
0.83 0.14 0.04
Matches are distributed among these distances:
313 2 0.01
314 66 0.22
315 63 0.21
316 92 0.31
317 75 0.25
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (315 bp):
TCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCCTAACTCAACAAACGAAACAAGCGTACA
GGCACTGAGCTGACCGGAGAGGCATAATGAGCAAGTCGAGGATTCGCCCGATCCCCTCTGCGAGC
CGCCGGTCCCGCTGCCACAATCCCTGGTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
TAAGCCAACCAACGAAACAGGCGTGCGGGCGCTCAGCCAGCCAAAGAGGCAAAATGCGCAAGCCG
AGGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGA
Found at i:28129121 original size:159 final size:157
Alignment explanation
Indices: 28128620--28129114 Score: 521
Period size: 158 Copynumber: 3.1 Consensus size: 157
28128610 TCGGTTGGGG
* * * * *
28128620 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAATGGGTGTGTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-AGGCGTGCGGGCGCTCAG-
* ** * * ** *
28128685 CAGCCAAAGAGGCAAAATGCGCAAGCCG-GGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCC
64 CGGCCGGAGAGGCAAAATGCGCAAGCCGAGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCC
** * *
28128749 TGCTATCGCAACCCTCGATCTGGTCCGAT
129 TGCTGCCGCAACCCTCGATCCGGTTCGAT
* ** * * * * *
28128778 CTAAGACGGGGAATGAAC-CTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAG
1 CTTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAAAG-GCGTGCGGGCGCTCAG
* * * * *
28128842 CGGCCGGAGAGGCATAATGAGCAAGTCGA-GGATCGGCCCGATCCCCCTCTGTGAGCTGCCGGTC
64 CGGCCGGAGAGGCAAAATGCGCAAGCCGAGGGATCGGCCCGATCCCCC-CTGTGTGCTGCCGATC
* * * * * **
28128906 CCGCTGCCACAACCCTCGGTCCGGCTGGGG
128 CTGCTGCCGCAACCCTCGATCCGGTTCGAT
*
28128936 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-AGGCGTGCGGGCGCTCAG-
*
28129001 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCC
64 CGGCCGGAGAGGCAAAATGCGCAAGCCGAGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCC
* *
28129066 TGCTGCCGTAACCCTCGATCCAGTTCGAT
129 TGCTGCCGCAACCCTCGATCCGGTTCGAT
28129095 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
28129115 TGTATGCTTA
Statistics
Matches: 269, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 40 0.15
158 130 0.48
159 81 0.30
160 18 0.07
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGCGTGCGGGCGCTCAGCG
GCCGGAGAGGCAAAATGCGCAAGCCGAGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCCTG
CTGCCGCAACCCTCGATCCGGTTCGAT
Found at i:28129136 original size:26 final size:26
Alignment explanation
Indices: 28129095--28129147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28129085 CCAGTTCGAT
*
28129095 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28129121 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCGTATG
28129147 C
1 C
28129148 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28129853 original size:26 final size:26
Alignment explanation
Indices: 28129815--28129867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28129805 GGCTCAAAAT
*
28129815 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28129841 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28129867 C
1 C
28129868 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28130181 original size:26 final size:26
Alignment explanation
Indices: 28130145--28130197 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28130135 CCGGTCCGAT
28130145 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28130171 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28130197 C
1 C
28130198 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28130412 original size:329 final size:330
Alignment explanation
Indices: 28129813--28130446 Score: 952
Period size: 329 Copynumber: 1.9 Consensus size: 330
28129803 GTGGCTCAAA
* *
28129813 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTATGCCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * *
28129878 CCACGAAACAAGCGTGCGGGCGCTCAATCATCCGGAGAGGCATAATGTGCAAGTCAGGGATCGGC
66 CCACGAAACAAGCGTGCGGGCGCTCAATCAGCCGAAGAGGCATAATGTCCAAGCCAGGGATCAGC
* * *
28129943 TCGGTCCCCCTCTGCATGCTGCCGATCCCACTGCCAGTCCTGCTGCCACAACCCTCGGTCCAGCT
131 TCGGCCCCCCTCTGCATGCTGCCGATCCCACTGCCAGTCCTACTGCCACAACCCTCAGTCCAGCT
* *
28130008 AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCT
196 AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGAGCT
* *
28130073 CGACCGGTCGGAGAGGTAGAATGCGCAAG-CTGGGGATTGGCTCGGCCTGATCAACCCTCGGTCC
261 CGACCGGTCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCTCGGCCTGATCAACCCTCGGTCC
28130137 GGTCCG
325 GGTCCG
* * *
28130143 ATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
* ** * *
28130207 CGCACGAAATGAGCGTGCGGGTGCTCAGTCAGCCGAAGAGGCATAATG-CCAAGCC-GAGGATCA
65 CCCACGAAACAAGCGTGCGGGCGCTCAATCAGCCGAAGAGGCATAATGTCCAAGCCAG-GGATCA
** **
28130270 GCTCGGCCCCCCTCTGCATGCTGTTGATCCCGTTGCCAGTCCTACTGCCACAACCCTCAGTCCAG
129 GCTCGGCCCCCCTCTGCATGCTGCCGATCCCACTGCCAGTCCTACTGCCACAACCCTCAGTCCAG
*
28130335 CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGAG
194 CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGAG
* *
28130400 CTCGATCGGTCGGAGTGGCAGAATGCGCAAGTCGGGGATCGGCTCGG
259 CTCGACCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGG
28130447 TCCCCCCTTG
Statistics
Matches: 272, Mismatches: 29, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
328 1 0.00
329 172 0.63
330 99 0.36
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (330 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCACGAAACAAGCGTGCGGGCGCTCAATCAGCCGAAGAGGCATAATGTCCAAGCCAGGGATCAGC
TCGGCCCCCCTCTGCATGCTGCCGATCCCACTGCCAGTCCTACTGCCACAACCCTCAGTCCAGCT
AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGAGCT
CGACCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGCCTGATCAACCCTCGGTCCG
GTCCG
Found at i:28130531 original size:172 final size:170
Alignment explanation
Indices: 28130170--28130498 Score: 367
Period size: 170 Copynumber: 1.9 Consensus size: 170
28130160 AACTCCATAT
* * * * * *
28130170 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGAGCTCAG
* *
28130235 TCAGCCGAAGAGGCATAATGCCAAGCCGAGGATCAGCTCGGCCCCCCTCTGCATGCTGTTGATCC
66 TCAGCCGAAGAGGCAGAATGCCAAGCCGAGGATCAGCTCGGCCCCCCTCTGCATGCTGTCGATCC
* * *
28130300 CGTTGCCAGTCCTACTGCCACAACCCTCAGTCCAGCTAGG
131 CGCTACCAGTCCTACTGCCACAACCCTCAGTCCAGCTAGA
*
28130340 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGAGCTC-
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGAGCTCA
* * * * * * * *
28130403 GATCGGTCGGAGTGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCT-TGACGTGCTGTC
65 G-TCAGCCGAAGAGGCAGAATGC-CAAGCCGAGGATCAGCTCGG-CCCCCCTCTG-CATGCTGTC
* ** * *
28130467 GATCCTGCTACTGGTCCTACTGTCGCAACCCT
126 GATCCCGCTACCAGTCCTACTGCCACAACCCT
28130499 TAGTTTGGTC
Statistics
Matches: 130, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
169 1 0.01
170 70 0.54
171 20 0.15
172 39 0.30
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (170 bp):
GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGAGCTCAG
TCAGCCGAAGAGGCAGAATGCCAAGCCGAGGATCAGCTCGGCCCCCCTCTGCATGCTGTCGATCC
CGCTACCAGTCCTACTGCCACAACCCTCAGTCCAGCTAGA
Found at i:28131077 original size:159 final size:157
Alignment explanation
Indices: 28130539--28131114 Score: 498
Period size: 159 Copynumber: 3.6 Consensus size: 157
28130529 ACTTCATATG
* * * * * *
28130539 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGAGCGCTCAGC
* * * * * ** *
28130604 CGGTCGAAGAGGTAGAATGTGCAAGTCGGGGATCGGCCCAGTCCCCCCTTTGTGCTATCGATCCT
66 CGGTAG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTACGTGCTACCGATCCT
* * * *
28130669 GCTATCACAACCCTCAGTTCGGTCCGAT
130 GCTACCACAACCATCGGTTCGATCCGAT
* * *
28130697 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTAC-AGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGA-GCGCTCA
* * * * * * *
28130760 GCCAGTCGGAGAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTACCGAT
64 GCCGGT-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCTCTACGTGCTACCGAT
* * * * **
28130825 -CTCGCTGCCACAA-CACTAGATTCGA-CTGGGG
127 CCT-GCTACCACAACCA-TCGGTTCGATC-CGAT
* * *** ** * *
28130856 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGAGCGCTCAGC
* * * *
28130921 TGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCTCTGCGTGCCTGCCGATCC
66 CGG-TAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTACGTG-CTACCGATCC
** * *
28130986 TGCTACCGTAACCATCGGTCCAATCCGAT
129 TGCTACCACAACCATCGGTTCGATCCGAT
*
28131015 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGAGCGCTCAG
** * *
28131079 CCGACCAGAGAGGCAGGATGTGCAAGCCGGGGATCG
65 CCG-GTAGAGAGGCAGAATGCGCAAGCCGGGGATCG
28131115 AACGAGTGGT
Statistics
Matches: 322, Mismatches: 80, Indels: 31
0.74 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 101 0.31
159 213 0.66
160 7 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGAGCGCTCAGC
CGGTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTACGTGCTACCGATCCTG
CTACCACAACCATCGGTTCGATCCGAT
Found at i:28131115 original size:318 final size:317
Alignment explanation
Indices: 28130538--28131115 Score: 777
Period size: 318 Copynumber: 1.8 Consensus size: 317
28130528 AACTTCATAT
* *
28130538 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** *
28130603 TCGGTCGAAGAGGTAGAATGTGCAAGTCGGGGATCGGCCCAGTCCCCCCTTTGTGCTATCGATCC
66 TCGGTAGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTGCGTGCTACCGATCC
* * * ** *
28130668 TGCTATCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTACCACAACCATCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
28130733 CCCACGAAACAAGCGTACAGGCACTGAGCCAGTCGGAGAGGCATAATGCGTAAGCCGAGGATCGA
196 CCCACGAAACAAGCGTACAGGCACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA
28130798 CCCGGTCCCCCTCTACGTGCTACCGATCTCGCTGCCACAACACTAGATTCGACTGGG
261 CCCGGTCCCCCTCTACGTGCTACCGATCTCGCTGCCACAACACTAGATTCGACTGGG
* * * *
28130855 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
28130920 -CTGGCTAG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCTCTGCGTGCCTGCCGA
66 TC-GG-TAGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTGCGTG-CTACCGA
** *
28130983 TCCTGCTACCGTAACCATCGGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGT
128 TCCTGCTACCACAACCATCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGT
* * * *
28131048 CAACCCACGAAACAAGCGTAC-GAGCGCTCAGCC-GACCAGAGAGGCAGGATGTGCAAGCCGGGG
193 CAACCCACGAAACAAGCGTACAG-GCACTCAGCCAG-CCAGAGAGGCAGAATGCGCAAGCCGAGG
28131111 ATCGA
256 ATCGA
28131116 ACGAGTGGTA
Statistics
Matches: 222, Mismatches: 34, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
316 1 0.00
317 103 0.46
318 118 0.53
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGTAGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTGCGTGCTACCGATCC
TGCTACCACAACCATCAGTCCAATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACAAGCGTACAGGCACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA
CCCGGTCCCCCTCTACGTGCTACCGATCTCGCTGCCACAACACTAGATTCGACTGGG
Found at i:28131749 original size:26 final size:26
Alignment explanation
Indices: 28131711--28131763 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28131701 GGCTCAAAAT
28131711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28131737 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28131763 C
1 C
28131764 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28132114 original size:159 final size:158
Alignment explanation
Indices: 28131736--28132152 Score: 412
Period size: 159 Copynumber: 2.6 Consensus size: 158
28131726 AACTCCGTAT
* * *
28131736 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
** * * * *
28131801 TTG-GTCGGAGAGGCAAAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATC
66 CCGACT-GGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTTACGTGCTGTCGATC
* * * * *
28131865 CTGCTACCGTAATCCTTGGTCCGATCCAA
130 CCGCTACCGCAACCCTCGGTCCGAGCCAA
* * * ** * *
28131894 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTGAACCCACGGAACGAGCGA-GCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC-ATGCGGGCGCTC
* * * * * *
28131957 AGCCGACTGAAGAGGCATAATGCGTAAGCCGAGGATCAGCTCAGTCCCCCTCTACGTGCTGTCGG
64 AGCCGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCT-TACGTGCTGTCGA
* * *
28132022 TCCCGCTA-TGACAACCCTCGGTCC-AGCTAGG
128 TCCCGCTACCG-CAACCCTCGGTCCGAGCCA-A
* * * *
28132053 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * *
28132118 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATC
66 CCGACTGGAGAGGCAAAATGCGCAAGCCGGGGATC
28132153 GAATGGGTGG
Statistics
Matches: 205, Mismatches: 46, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 95 0.46
159 108 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTTACGTGCTGTCGATCC
CGCTACCGCAACCCTCGGTCCGAGCCAA
Found at i:28133229 original size:158 final size:157
Alignment explanation
Indices: 28132777--28133271 Score: 441
Period size: 158 Copynumber: 3.1 Consensus size: 157
28132767 AACTCCGTAT
* *
28132777 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTA--CGGGCGCTC
1 GCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG-G-GTATGCGGGCGCTC
* * *
28132840 AGCCGGCCGGAGAGGCAAAATGCAC-AAGTCGGGGATCGGTCTGATCCCCCCTGCGTGCTATTGA
64 AGCCGGCCGGAGAGGCAAAATGCACAAACT-GGGGATCGGTCAG-TCCCCCCTGCGTGCTACTGA
* **
28132904 TCCTGCT-ACTGCAACCCTTTGTCCGGTCTAA
127 TCCTGCTGTC-GCAACCCTCGGTCCGGTCTAA
* * * * * * * *
28132935 TCTTAGACT-GGGAATGAACTCCATATGCATAAGTCAACCCA-GAAAACGAGTGTGCAGGCGCTG
1 GCTTAGA-TATGGAATGAACTCCATATGCCTAAGCCAACCCACG-AAACGGGTATGCGGGCGCTC
* * * * * * *
28132998 AGCTGGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGTCGGTCCCCCTCTGCGTGCT-GTCGG
64 AGCCGGCCGGAGAGGCAAAATGCACAAACTGGGGATCGGTCAGTCCCCC-CTGCGTGCTACT-GA
* * * **
28133062 TCCCGCTGTCACAACCCTCGGTCTGG-CTGGG
127 TCCTGCTGTCGCAACCCTCGGTCCGGTCT-AA
* * *
28133093 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTATGCGGGCGCTCAA
1 GCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGTATGCGGGCGCTCAG
** * * * *
28133158 CCGATCGGAGAGGCAGAATGCACAAACTGGGCATCGGCCCAGTTCCCCCTGCGTGCTACTGATCC
66 CCGGCCGGAGAGGCAAAATGCACAAACTGGGGATCGG-TCAGTCCCCCCTGCGTGCTACTGATCC
* * * *
28133223 TACTGTCGCAACCCTCGATCCAGTCTGA
130 TGCTGTCGCAACCCTCGGTCCGGTCTAA
*
28133251 TCTTAGAT-TGGGAATGAACTC
1 GCTTAGATAT-GGAATGAACTC
28133272 TGTATGCTTA
Statistics
Matches: 265, Mismatches: 57, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
156 2 0.01
157 12 0.05
158 237 0.89
159 14 0.05
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGTATGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCACAAACTGGGGATCGGTCAGTCCCCCCTGCGTGCTACTGATCCT
GCTGTCGCAACCCTCGGTCCGGTCTAA
Found at i:28133932 original size:158 final size:157
Alignment explanation
Indices: 28133478--28133968 Score: 460
Period size: 158 Copynumber: 3.1 Consensus size: 157
28133468 CCGTATGCTT
* * * *
28133478 GACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGTGCTCAGTC-GC
1 GACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAATGGGCGTGCGGGCGCTCAG-CGGC
* * * * * * ** *
28133542 CTAGAGAGGTAGAATGTGCAAGACGGGGACCGACCCGGTCGCCCCCTACATGCTGTCGGTCCTGC
65 C-AGAGAGGTAGAATGTGCAAGCCGAGGATCGACCCGATC-CCCCCTGCGTGCTACCGATCCTGC
* *
28133607 TGCCGTAACCCTCAGTCCGGTCTATTCTTA
128 TGCCGCAACCCTCAGTCCGGTCTAGTCTTA
** * * *
28133637 GAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATAGGCATGCGGGCGCTGAGCCGG
1 GACAT-GGAATGAACTCCGTATGCCTAAGACAACCCATGAAATGGGCGTGCGGGCGCTCAG-CGG
* * * * * *
28133701 CCGGAGAGGCATAATGTGCAAGCC-AGGGATCG-GCCGAGTCCCCCTCTGCGTGCTACCTATCCC
64 CCAGAGAGGTAGAATGTGCAAGCCGA-GGATCGACCCGA-TCCCCC-CTGCGTGCTACCGATCCT
* *
28133764 GCT-CCACAACCCTCGGTCCGG-CTAGGGT-TTA
126 GCTGCCGCAACCCTCAGTCCGGTCTA--GTCTTA
* * *
28133795 GACATGGAATGAACACCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCAGGC
1 GACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAATGGGCGTGCGGGCGCTCAGC-GGC
* * *
28133860 CAGAGAGGTAGAAT-TCGTAAGCCGAGGATTGACCCGATCCCCCCTGCGTGCTACCGATCCTACT
65 CAGAGAGGTAGAATGT-GCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTGCT
** * *
28133924 GTTGCAACCCTCAGTCCGGTCCAATCTTA
129 GCCGCAACCCTCAGTCCGGTCTAGTCTTA
28133953 GAC-TGGGAATGAACTC
1 GACAT-GGAATGAACTC
28133969 TGCATGCTTA
Statistics
Matches: 264, Mismatches: 52, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
157 25 0.09
158 138 0.52
159 98 0.37
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAATGGGCGTGCGGGCGCTCAGCGGCC
AGAGAGGTAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTGC
CGCAACCCTCAGTCCGGTCTAGTCTTA
Found at i:28134001 original size:26 final size:26
Alignment explanation
Indices: 28133949--28134001 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28133939 CCGGTCCAAT
*
28133949 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
28133975 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
28134001 C
1 C
28134002 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:28135124 original size:26 final size:26
Alignment explanation
Indices: 28135095--28135146 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28135085 CCGGTCTGAT
*
28135095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
28135121 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
28135147 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:28135436 original size:171 final size:170
Alignment explanation
Indices: 28135214--28135594 Score: 442
Period size: 171 Copynumber: 2.2 Consensus size: 170
28135204 GCACAAGCTG
* * * * *
28135214 GGGATCAGCCCGATCCCCCTCTGCATGCTATCGATCTTGCAGCCGGTCCTGCCACCACAATCCTC
1 GGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATCCTGCAGCCAGTCCTGCCACCACAACCCTC
* * **
28135279 GGT-TCGGT-TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGC
65 GATCT-GATCT-AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGC
* * * **
28135342 GTCCGAGCGCTCAGCCTATTGGAAAGGTAGAATGTGCAAGCCA
128 GTCCGAGCGCTCAGCCGACTGGAAAGGCAGAATACGCAAGCCA
* * ** *
28135385 GGGATCGGCCCGATCCCTCCCTACGTGCTATCGATCCTGCAGCTAGTCCTGCTGCCATAACCCTC
1 GGGATCGGCCCGATCCC-CCCTGCGTGCTATCGATCCTGCAGCCAGTCCTGCCACCACAACCCTC
* *
28135450 GATCTGATCTAATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGT
65 GATCTGATCTAAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGT
* * * * * * *
28135515 GCGGGTGCTCAGCCGGCTGGAGAGGCAGAATACGTAAGCCG
130 CCGAGCGCTCAGCCGACTGGAAAGGCAGAATACGCAAGCCA
* *
28135556 GGGATCGGCCCGATCCCCCATGCGTGCTGTCGATCCTGC
1 GGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGC
28135595 TGCCGCTACC
Statistics
Matches: 176, Mismatches: 31, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
170 19 0.11
171 153 0.87
172 4 0.02
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (170 bp):
GGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCAGCCAGTCCTGCCACCACAACCCTCG
ATCTGATCTAAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTC
CGAGCGCTCAGCCGACTGGAAAGGCAGAATACGCAAGCCA
Found at i:28136014 original size:158 final size:158
Alignment explanation
Indices: 28135292--28136038 Score: 597
Period size: 158 Copynumber: 4.6 Consensus size: 158
28135282 TCGGTTGGGG
* * *
28135292 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTCCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* ** * * * * * *
28135357 CTATTGGAA-AGGTAGAATGTGCAAGCCAGGGATCGGCCCGATCCCTCCCTACGTGCTATCGATC
66 CGA-CCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCC-CCCTGCGTGC--T-G---
** *
28135421 CTGCAGCTAGTCCTGCTGCCATAACCCTCGATCTGATCTAAT
123 C--C-G--A-TCCTGCTGCCGCAACCCTCGATCCGATCTAAT
*
28135463 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * ** * * * *
28135528 CGGCTGGAGAGGCAGAATACGTAAGCCGGGGATCGGCCCGATCCCCCATGCGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * *
28135593 GCTGCCGCTACCCTCGATCCAATCCAAT
131 GCTGCCGCAACCCTCGATCCGATCTAAT
* ** * * *
28135621 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * **
28135685 TCGATCGAAGAGGCATAATGTGTAAGTCAAGGATCGGCCCGGTCCCCCTCTATGTGCTGCC-AGT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCC-CTGCGTGCTGCCGA-T
* * * ***
28135749 CCCGCTGCCACAACCCTCGGTCCGA-CTGGGG
128 CCTGCTGCCGCAACCCTCGATCCGATCT-AAT
* * * * * *
28135780 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGCACTCGGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * *
28135845 CGGCCGAAGAGGTAGAATGCGCAAGCCAAGGATCGACTCGGTCCCCCCTGCGTGATACCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * * *
28135910 ACTGTCGCAACCCTCGGTCTGATCTAAT
131 GCTGCCGCAACCCTCGATCCGATCTAAT
* * * * * *
28135938 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCCTACGGACGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* **
28136002 CCGACC-AGAGAGGCAGGATGCGCAAGCCGGGGATCGA
65 CCGACCGA-AGAGGCAGAATGCGCAAGCCAAGGATCGA
28136039 ACGTGTGGTA
Statistics
Matches: 464, Mismatches: 102, Indels: 33
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 230 0.50
159 123 0.27
160 1 0.00
161 1 0.00
162 1 0.00
167 1 0.00
168 1 0.00
170 10 0.02
171 93 0.20
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCGCAACCCTCGATCCGATCTAAT
Found at i:28136870 original size:26 final size:26
Alignment explanation
Indices: 28136832--28136884 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28136822 CCGGTCCGAT
28136832 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28136858 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28136884 C
1 C
28136885 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28137227 original size:26 final size:26
Alignment explanation
Indices: 28137175--28137227 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28137165 CCAGTCCTAT
*
28137175 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
28137201 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGCATG
28137227 C
1 C
28137228 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:28138778 original size:26 final size:25
Alignment explanation
Indices: 28138739--28138790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
28138729 CCGATTCGAT
28138739 CTTAGACTGGAATGAAC-TCTGTATG
1 CTTAGACTGGAATGAACTTC-GTATG
28138764 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-TGGAATGAACTTCGTATG
28138790 C
1 C
28138791 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 16 0.64
27 2 0.08
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTTCGTATG
Found at i:28141053 original size:26 final size:26
Alignment explanation
Indices: 28141002--28141054 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28140992 CCGGTCCGAT
* *
28141002 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACATATG
*
28141028 CTTAGACTGGGGATGAACTACATATG
1 CTTAGACTGGGAATGAACTACATATG
28141054 C
1 C
28141055 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:28141506 original size:869 final size:870
Alignment explanation
Indices: 28140329--28141917 Score: 2054
Period size: 869 Copynumber: 1.8 Consensus size: 870
28140319 AACTCCATAT
** * * *
28140329 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAACATGCGGGCACTCAG
* * * * * *
28140394 TCGGCCAGAGAGGTAGAATGCACAAGCCAGGGATCTGCCCAGTCCCCCCTTGCGTACTGTCAATC
66 CCGACCAGAGAGGCAGAATGCAAAAGCCAGGGATCGGCCCAGTCCCCCCTTGCGTACTGCCAATC
* * * *
28140459 TTGCTGCTAGTCCTACTGCCACAACCCTCAGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGT
131 TTGCTACTAGTCCTACTGCCACAACCCTCAGTCTAGTCCAATCTTAAACTGGGAATGAACTCCGT
* * * *
28140524 ATGCTTAGACATAGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTC
196 ATCCTTAGACATAGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCGTGAGGGCGCTC
* * ** * *
28140589 AGCCGGTCGGAGAGTCGGAATGCACAAGTCGGGGACCGACTTGATCCCCCCCTGCGTGCTGTTGT
261 AGCCGGTCGGAGAGTCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCCTGCGTGCTGTCGA
28140654 TCCTACTACCACAACACTCGGTCCGATCCGATCTTAGACTGGGAATGAAC-TCTGTATACCTAAG
326 TCCTACTACCACAACACTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTC-GTATACCTAAG
* * * * *
28140718 TCGACCCA-CAAAACGAGCGTTCGGGCACTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCAGGG
390 TCAACCCATCAAAA-GAGCGTACGGGCACTGAACCGATCGAAGAGGCATAATGAGCAAGCCAGGG
* * * * *
28140782 ATCGGCCCAGT-CCCTCTCCGCGTGCTACCGGTCCCACTGCCACAACCCTCGGTCTGGCTGGGGC
454 ATCGGCCCAGTCCCCCCTCCGCGTCCTACCGATCCCACTCCCACAACCCTCGGTCTGACTGGGGC
* * * * **
28140846 TTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGT-GGG-AGCTTTG
519 TTAGACAAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGG--TGTAGGGCA-CTCAG
* ** *
28140909 CCGG-TCGGAGAGGCAGAATGCGTAAGCC-GAGGATCAACCCGATCC-CCCTACGTGATG-TCGA
581 CCGGCT-GGAGAGGCAAAATGCACAAACCAG-GGATCAACCCGATCCTCCCTACGTGATGCT-GA
* ** ** *
28140970 TCCTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
643 TCCTACTACCGTAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
28141035 TGGGGATGAACTACATATGCCTAAGTCAACTCACGAAAAGAGCGTACGGGCGCTCAGCCGGCCGG
708 TGGGGATGAACTACATATGCCTAAGTCAACTCACGAAAAGAGCGTACGGGCGCTCAGCCGGCCGG
28141100 AGAGGCATAATGCGTAAGTCGGGGATCAACCTGGGCCTCTTCTACGTGCTGTCGATCCCGCTGTC
773 AGAGGCATAATGCGTAAGTCGGGGATCAACCTGGGCCTCTTCTACGTGCTGTCGATCCCGCTGTC
28141165 GGTCCTGCTGCCTCAACCCTCGGTTCGGTCGGG
838 GGTCCTGCTGCCTCAACCCTCGGTTCGGTCGGG
* * *
28141198 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAATGAAACGAATATGCGGGCACTCAG
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAACATGCGGGCACTCAG
** * * *
28141263 CCGACCAGAGAGGCAGAATGCAAAAG-TTGAGGATCGGCCCGGTCTCCCCC-TGCGTGCTGCCGA
66 CCGACCAGAGAGGCAGAATGCAAAAGCCAG-GGATCGGCCCAGTC-CCCCCTTGCGTACTGCCAA
* * * * * * *
28141326 TCTTGCTACTGGTCCTACTGTCGCAACCCTCAAT-TCAGTTCGATCTTAAACTGGGAATGAAGTC
129 TCTTGCTACTAGTCCTACTGCCACAACCCTCAGTCT-AGTCCAATCTTAAACTGGGAATGAACTC
* * *
28141390 CGTATCCTTAGACATGGAATGAACTCCGTATGGCTAAACCAACCCACGAAATGAGCGTGCGGGCG
193 CGTATCCTTAGACATAGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCGTGAGGGCG
* **
28141455 CTCAGTCGGTCGGAGAGGT-AGAATGCGTAAGCCGGGGACC-AGCCCGATCCCCCCCTGCGTGCT
258 CTCAGCCGGTCGGAGA-GTCAGAATGCACAAGCCGGGGACCGA-CCCGATCCCCCCCTGCGTGCT
* **** * * *
28141518 GTCGATCCTGCTGTGGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCC
321 GTCGATCCTACTACCACAACACTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATACC
* ** * *
28141583 TAAGTCAACCCATGAAAAGAGCGTACGGGTGCTGAACCGATCGGAGAGGCATAATGAGCAAGCCG
386 TAAGTCAACCCATCAAAAGAGCGTACGGGCACTGAACCGATCGAAGAGGCATAATGAGCAAGCCA
* * * *
28141648 GGGATCGGCCCGGTCCCCCCTCTGCGTCCTGCCGATCCCGCTCCCACAACCCTCGGTCTGACTGG
451 GGGATCGGCCCAGTCCCCCCTCCGCGTCCTACCGATCCCACTCCCACAACCCTCGGTCTGACTGG
*
28141713 GGCTTAGACAAGGAATGAACTCCCTATACCTTAGCCAACCCACGAAACGGGTGTACGGGCACTCA
516 GGCTTAGACAAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGTGTA-GGGCACTCA
* *** * * * *
28141778 GCTGGCTGGAGAGGCAAAATGCACAAACCAGGGATTGGCTCGGTCCTCCCTACGTGCTGCTTATC
580 GCCGGCTGGAGAGGCAAAATGCACAAACCAGGGATCAACCCGATCCTCCCTACGTGATGCTGATC
* *
28141843 CTACTACCGTAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTGCATGCTTAGACTG
645 CTACTACCGTAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTG
28141908 GGGATGAACT
710 GGGATGAACT
28141918 TCGTATAGCT
Statistics
Matches: 605, Mismatches: 100, Indels: 28
0.83 0.14 0.04
Matches are distributed among these distances:
868 6 0.01
869 376 0.62
870 138 0.23
871 84 0.14
872 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (870 bp):
GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAACATGCGGGCACTCAG
CCGACCAGAGAGGCAGAATGCAAAAGCCAGGGATCGGCCCAGTCCCCCCTTGCGTACTGCCAATC
TTGCTACTAGTCCTACTGCCACAACCCTCAGTCTAGTCCAATCTTAAACTGGGAATGAACTCCGT
ATCCTTAGACATAGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCGTGAGGGCGCTC
AGCCGGTCGGAGAGTCAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCCTGCGTGCTGTCGA
TCCTACTACCACAACACTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATACCTAAGT
CAACCCATCAAAAGAGCGTACGGGCACTGAACCGATCGAAGAGGCATAATGAGCAAGCCAGGGAT
CGGCCCAGTCCCCCCTCCGCGTCCTACCGATCCCACTCCCACAACCCTCGGTCTGACTGGGGCTT
AGACAAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGTGTAGGGCACTCAGCCGGC
TGGAGAGGCAAAATGCACAAACCAGGGATCAACCCGATCCTCCCTACGTGATGCTGATCCTACTA
CCGTAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGGATG
AACTACATATGCCTAAGTCAACTCACGAAAAGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAT
AATGCGTAAGTCGGGGATCAACCTGGGCCTCTTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGC
TGCCTCAACCCTCGGTTCGGTCGGG
Found at i:28142640 original size:26 final size:26
Alignment explanation
Indices: 28142602--28142654 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28142592 GGCTTAAACT
*
28142602 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28142628 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28142654 C
1 C
28142655 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28144059 original size:26 final size:26
Alignment explanation
Indices: 28144030--28144082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28144020 GGCTCAAACT
*
28144030 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28144056 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28144082 C
1 C
28144083 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28145099 original size:159 final size:158
Alignment explanation
Indices: 28144751--28145115 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 158
28144741 AACTCCGTAT
* * **
28144751 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGAGCGTGAAGGCACTCAG
* * * * *
28144816 CCGACTGAAGAGGCGGAATGCATAAGCCAGGAACCGGCCTGATCCCCATTGCGTTCTATCGATCC
66 CCGACTGAAGAGGCAGAATGCACAAGCCAGGAACCGCCCTGATCCCCATTGCGTGCTACCGATCC
** * * *
28144881 TGCTATCGCAACCCTCGTTCTGGTCTGA
131 CACTACCACAACCCTCGGTCTGGTCTGA
* * *
28144909 TCTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGTCGACCCACGAAATGAGCGT-ACAGGCACT
1 GCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATGAGCGTGA-AGGCACT
* * * * * * * *
28144971 GAGCCG-GTAGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCTG-TCCCCCTCTGCGTGCTAC
63 CAGCCGACT-GAAGAGGCAGAATGCACAAGCCAGGAACCG-CCCTGATCCCCAT-TGCGTGCTAC
* *
28145034 CGGTCCCACTACCACAACCCTCGGTCTGG-CTGGG
125 CGATCCCACTACCACAACCCTCGGTCTGGTCT-GA
*
28145068 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATG
28145116 GGTATGCGGG
Statistics
Matches: 167, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
157 3 0.02
158 86 0.51
159 76 0.46
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGAGCGTGAAGGCACTCAG
CCGACTGAAGAGGCAGAATGCACAAGCCAGGAACCGCCCTGATCCCCATTGCGTGCTACCGATCC
CACTACCACAACCCTCGGTCTGGTCTGA
Found at i:28145158 original size:159 final size:158
Alignment explanation
Indices: 28144751--28145167 Score: 371
Period size: 159 Copynumber: 2.6 Consensus size: 158
28144741 AACTCCGTAT
* * ** * *
28144751 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGGGTATGCGGGAGCTCAG
* * * ** * * * * *
28144816 CCGACTGAAGAGGCGGAATGCATAAGCCAGGAACCGGCCTGATCCCCATTGCGTTCTATCGATCC
66 CCGGCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGCCCTGATCCCCATTGCGTGCTACCGATCC
** * * *
28144881 TGCTATCGCAACCCTCGTTCTGGTCTGA
131 CACTACCACAACCCTCGGTCTGGTCTGA
* * * *
28144909 TCTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGTCGACCCACGAAATGAGCGTA--CAGGCA-
1 GCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATG-G-GTATGC-GGGAG
* * * * *
28144969 CTGAGCCGGTAGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCTG-TCCCCCTCTGCGTGCTA
61 CTCAGCCGGCAGAAGAGGCAGAATGCGCAAGCCAGGGATCG-CCCTGATCCCCAT-TGCGTGCTA
* *
28145033 CCGGTCCCACTACCACAACCCTCGGTCTGG-CTGGG
124 CCGATCCCACTACCACAACCCTCGGTCTGGTCT-GA
* *
28145068 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGGGTATGCGGGAGCTTAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGGGTATGCGGGAGCTCAG
* * * *
28145133 TCGGCCGAAGAGGCAGAATGTGCAAGCCGGGGATC
66 CCGGCAGAAGAGGCAGAATGCGCAAGCCAGGGATC
28145168 AGCTTGGTCC
Statistics
Matches: 201, Mismatches: 45, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
157 4 0.02
158 83 0.41
159 111 0.55
160 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGGGTATGCGGGAGCTCAG
CCGGCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGCCCTGATCCCCATTGCGTGCTACCGATCC
CACTACCACAACCCTCGGTCTGGTCTGA
Found at i:28145963 original size:159 final size:158
Alignment explanation
Indices: 28145616--28146103 Score: 500
Period size: 159 Copynumber: 3.1 Consensus size: 158
28145606 AATGAACTCT
* * * * * * *
28145616 GGAATGAACTCCGTATGGCGAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * *
28145681 AGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCGTCCC-CTGCGTGCTTTCGATCCTACTACC
66 AGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCC--CCCTATGTGT-CTGTCGATCCTGCTGCC
* *
28145745 ACAACCCTCGGTCCGGTCTGATCTTAGACTG
128 ACAACCCTCGGTCTGGTCTGAGCTTAGACTG
* * * * *
28145776 GGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAACCGACCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * *
28145841 AGGCATAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCTTTGTGTCCTGTCGATCCCGCTGCCAC
66 AGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTATGTGT-CTGTCGATCCTGCTGCCAC
*
28145906 AACCCTCGGTCTGG-CTGGGGCTTAGACAT-
130 AACCCTCGGTCTGGTCT-GAGCTTAGAC-TG
* * ** * * * *
28145935 GTAATGAACTCCCTATGTGTTAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCC-AGCTGAA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGGA
* * * *
28145999 GAGGTAGAATGCGTAAACCAGGGATCAGCCCGGTCCCCCCTACGTGT-TGTCGATCCTGCTGCCA
65 GAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGT-CCCCCTATGTGTCTGTCGATCCTGCTGCCA
* *
28146063 CAACCCTCGGTCTGGTCTGATCTTACACTG
129 CAACCCTCGGTCTGGTCTGAGCTTAGACTG
28146093 GGAATGAACTC
1 GGAATGAACTC
28146104 TGCATGCTTA
Statistics
Matches: 268, Mismatches: 53, Indels: 16
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 54 0.20
159 119 0.44
160 94 0.35
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTATGTGTCTGTCGATCCTGCTGCCACA
ACCCTCGGTCTGGTCTGAGCTTAGACTG
Found at i:28147315 original size:26 final size:26
Alignment explanation
Indices: 28147277--28147329 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28147267 GGCTCAAACT
28147277 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28147303 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
28147329 C
1 C
28147330 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28153639 original size:26 final size:26
Alignment explanation
Indices: 28153601--28153653 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28153591 CTGATCTGAT
*
28153601 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28153627 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28153653 C
1 C
28153654 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28153915 original size:158 final size:158
Alignment explanation
Indices: 28153627--28153917 Score: 357
Period size: 158 Copynumber: 1.8 Consensus size: 158
28153617 ACTTCGTATG
* * ** * ** * *
28153627 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATTAAGGATGCGGGTGCTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCACACGGGTGCTAAAT
* * ** * *
28153692 CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGGTCCCCCCTGTGTGCTGTCGATCCT
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCCTACGTGCTATCAATCCT
28153757 ACTGCCACAACCCTCGGTTTGATCCAAT
131 ACTGCCACAACCCTCGGTTTGATCCAAT
* * *
28153785 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCACACGGGTGCTAAAT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCACACGGGTGCTAAAT
* ** * ** *
28153850 TGGCTGGAGAGGCATAATGCGCAAGTTGAGGATCAGCCCGATCCCCCCTACGTGCTATCAATCCT
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCCTACGTGCTATCAATCCT
28153915 ACT
131 ACT
28153918 ACTGGTTCTC
Statistics
Matches: 108, Mismatches: 25, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
158 108 1.00
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCACACGGGTGCTAAAT
CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCCTACGTGCTATCAATCCT
ACTGCCACAACCCTCGGTTTGATCCAAT
Found at i:28154246 original size:354 final size:353
Alignment explanation
Indices: 28153599--28154249 Score: 835
Period size: 354 Copynumber: 1.8 Consensus size: 353
28153589 GTCTGATCTG
* * * * *
28153599 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAAACTAGGAATGAACTCCGAATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
* ** * * *
28153664 CCACGAATTAAGGATGCGGGTGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAAC
66 CAACGAAACAAGGATGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAAC
* * * *
28153729 CTGGTCCCCCCTGTGTGCTGTCGATCCTACTGCCACAACCCTCGGTTTGATCCAATCTTAGACAG
131 CCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTTAGATCCAATCTTAGACAG
* ** * *
28153794 GGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCACACGGGTGCTAAATTGGCTGGAG
196 GGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCACACGGGCGCTAAACCGACCGGAG
* *
28153859 AGGCATAATGCGCAAGTTGAGGATCAGCCCGATCCCCCCTACGTGCTATCAATCCTACTACTGGT
261 AGGCAAAATGCGCAAGTAGAGGATCAGCCCGATCCCCCCTACGTGCTATCAATCCTACTACTGGT
28153924 TCTCTACCACAACCATCAGTCCCGTCCA
326 TCTCTACCACAACCATCAGTCCCGTCCA
*
28153952 ATCTTAAACTAGGAATGAACTCCGAATGCTTAGACATGGAATGAACTCCGTACGCTTAAGCCAAC
1 ATCTTAAACTAGGAATGAACTCCGAATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
* * ** * *
28154017 CAACGAAACGAGTG-TGCGGGCGCTCAG-CTGGCCGGAGAGGCAGAATGCACAAGTTGGGGACCG
66 CAACGAAACAAG-GATGCGGGCGCTCAGTC-GGCCAGAGAGGCAGAATGCACAAGCCGAGGACCA
* **
28154080 TCCCGATCCCCCACTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTTCAG-TCTGATCTTAG
129 ACCCGATCCCCC-CTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTT-AGATCCAATCTTAG
* * * **** * * *
28154144 ACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGTGTTCGGGCGTTGAGCCGACC
192 ACAGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCACACGGGCGCTAAACCGACC
28154209 GGAGAGGCAAAATGCGCAAGTCAG-GGATC-GACCCGATCCCC
257 GGAGAGGCAAAATGCGCAAGT-AGAGGATCAG-CCCGATCCCC
28154250 TTCTGCATGC
Statistics
Matches: 250, Mismatches: 42, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
352 1 0.00
353 116 0.46
354 131 0.52
355 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (353 bp):
ATCTTAAACTAGGAATGAACTCCGAATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
CAACGAAACAAGGATGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAAC
CCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTTAGATCCAATCTTAGACAG
GGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCACACGGGCGCTAAACCGACCGGAG
AGGCAAAATGCGCAAGTAGAGGATCAGCCCGATCCCCCCTACGTGCTATCAATCCTACTACTGGT
TCTCTACCACAACCATCAGTCCCGTCCA
Found at i:28154396 original size:159 final size:158
Alignment explanation
Indices: 28153979--28154409 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 158
28153969 AACTCCGAAT
* * *
28153979 GCTTAGACATGGAATGAACTCCGTACGCTTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * * *
28154044 CTGGCCGGAGAGGCAGAATGCACAAGTTGGGGACCGTCCCGATCCCCCACTGCGTGCTGTCGATC
66 C-CGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGATCCCCCACTGCATGCTGCCGATC
* * * *
28154109 CTACTGCCACAACCCTCGGTTCAGTCTGA
130 CCACTACCACAACCCTCGGATCAGGCTGA
* ** * * * *
28154138 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGTGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
* * ** *
28154202 GCCGACCGGAGAGGCAAAATGCGCAAGTC-AGGGATCGACCCGATCCCCTTCTGCATGCTGCCGG
65 GCCG-CCGGAGAGGCAGAATGCACAAGTCGA-GGATCGACCCGATCCCCCACTGCATGCTGCCGA
* * *
28154266 TCCCGCTACCACAACCCTC-GATCCGGCTGGG
128 TCCCACTACCACAACCCTCGGATCAGGCT-GA
* * ***
28154297 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAACCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * *
28154362 CCAGTCGGAGACGCAGAATGCACAAGTCGAGGATC-AGCTCGATCCCCC
66 CC-GCCGGAGAGGCAGAATGCACAAGTCGAGGATCGA-CCCGATCCCCC
28154410 TGCTTGCTGT
Statistics
Matches: 217, Mismatches: 47, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
158 9 0.04
159 205 0.94
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
CCGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGATCCCCCACTGCATGCTGCCGATCC
CACTACCACAACCCTCGGATCAGGCTGA
Found at i:28154784 original size:26 final size:26
Alignment explanation
Indices: 28154755--28154807 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28154745 CTGATCCGAT
28154755 CTCAAAC-TGGGAATGAACTCCATATG
1 CTCAAACAT-GGAATGAACTCCATATG
* *
28154781 CTCAGACATGGAATGAACTCCGTATG
1 CTCAAACATGGAATGAACTCCATATG
28154807 C
1 C
28154808 CTCAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (26 bp):
CTCAAACATGGAATGAACTCCATATG
Found at i:28154959 original size:26 final size:26
Alignment explanation
Indices: 28154921--28154976 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
28154911 TGCTACTGGT
*
28154921 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28154947 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28154973 CTTA
1 CTTA
28154977 AGCTAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28155053 original size:166 final size:165
Alignment explanation
Indices: 28154760--28155081 Score: 407
Period size: 166 Copynumber: 1.9 Consensus size: 165
28154750 CCGATCTCAA
*
28154760 ACTGGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCCTCAGCTAACCCATGAA
1 ACTGGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAA
*** ** * * *
28154825 ACGAGCGTGTGGGCACTCAGTCGACTGGAGAGGTAGAATGCGTAAGTCGGGGATCGACCCGGTCC
66 ACGAGCGTACAGGCACTCAACCGACTGGAGAGGTAGAATACGTAAGTCGAGGATCAACCCGGTCC
* * * *
28154890 CCTCCTGTGTGCTGTCGATCCTGCTACTGGTCTTAG
131 CC-CCTGCGTGCTATCAAACCTGCTACTGGTCTTAG
* * *
28154926 ACTGGGAATGAACTCCTTATGCTTAGACATGGAATGAACTCCGTATGCTTAAGCTAACCCATGAA
1 ACTGGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAA
* ** *
28154991 TCGAGCGTACAGGTGCTCAACC-AGCTGGAGAGGTGGAATACGTAAG-CTGAGGA-CTAACCCGG
66 ACGAGCGTACAGGCACTCAACCGA-CTGGAGAGGTAGAATACGTAAGTC-GAGGATC-AACCCGG
28155053 TCCCCCCTGCGTGCTATCAAACCTGCTAC
128 TCCCCCCTGCGTGCTATCAAACCTGCTAC
28155082 CACAACCCTC
Statistics
Matches: 133, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
165 23 0.17
166 110 0.83
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.22
Consensus pattern (165 bp):
ACTGGGAATGAACTCCATATGCTCAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAA
ACGAGCGTACAGGCACTCAACCGACTGGAGAGGTAGAATACGTAAGTCGAGGATCAACCCGGTCC
CCCCTGCGTGCTATCAAACCTGCTACTGGTCTTAG
Found at i:28155457 original size:26 final size:26
Alignment explanation
Indices: 28155421--28155473 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28155411 CTGATCTGAT
*
28155421 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28155447 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28155473 C
1 C
28155474 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28156462 original size:26 final size:26
Alignment explanation
Indices: 28156433--28156482 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
28156423 CCGATCTGAT
28156433 CTTAGACTGGGAATGAACTCTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
* *
28156459 CTTAGATTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
28156483 TGCCAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:28156878 original size:158 final size:158
Alignment explanation
Indices: 28156607--28157255 Score: 648
Period size: 158 Copynumber: 4.1 Consensus size: 158
28156597 TCCTACTGCT
* * *
28156607 GCAACCCTCGGTCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * ** * * *
28156672 AATGAGCTTGCGAGTGCTTAGCCTA-TCGAAGAGGC-TGAATGCGCAAGTCGA-GACCGACCTGA
66 AATGAGCGTGCGGGCACTAAGCC-AGTCGAAGAGGCAT-AATGCGCAAGTCGAGGATCGACCTGG
28156734 TCACCCCCTGCATGCTGTCGATCCTGCTGTC
129 TC-CCCCCTGCATGCTGTCGATCCTGCTGTC
* * *
28156765 GCAACCCTCGGTCCGATCCGATCTTACACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
28156830 AATGAGTGTACGGGCACTAAGCCAGTCGAAGAGGCATAATACGTAAGTCGAGGATCGATCTGGTC
66 AATGAGCGTGCGGGCACTAAGCCAGTCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCTGGTC
* * *
28156895 CCCCTCTGCGTGCTGCCGATCCTGCTGCC
131 CCCC-CTGCATGCTGTCGATCCTGCTGTC
* * * * ** *
28156924 ACAACCCTCGATTCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCAC
1 GCAACCCTCGGTCCGGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * ** * * * * * *
28156987 GAAATGGGCATGCAGGCACTCGGCC-GATCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCG
64 GAAATGAGCGTGCGGGCACTAAGCCAG-TCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCTG
* * *
28157051 GTCCCCTCTACATGCTGTCAATCCTGCTGTC
128 GTCCCCCCTGCATGCTGTCGATCCTGCTGTC
* *
28157082 GCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * *
28157147 AATGAGCGTGCGGGCGCTGAA-CCGGTCGAAGAGGCATAATGCGCAAGCCAAGGATAGGCTTGGT
66 AATGAGCGTGCGGGCACT-AAGCCAGTCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCTGGT
* * **
28157211 CCCCCTTTGCATGCTG-CTGATCCCGCTACC
130 CCCCC-CTGCATGCTGTC-GATCCTGCTGTC
*
28157241 ACAACCCTCGGTCCG
1 GCAACCCTCGGTCCG
28157256 ACTCAGCTGA
Statistics
Matches: 391, Mismatches: 87, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 225 0.58
159 163 0.42
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AATGAGCGTGCGGGCACTAAGCCAGTCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCTGGTC
CCCCCTGCATGCTGTCGATCCTGCTGTC
Found at i:28157077 original size:317 final size:317
Alignment explanation
Indices: 28156638--28157250 Score: 797
Period size: 317 Copynumber: 1.9 Consensus size: 317
28156628 TCTTAGGCTG
* * * * *
28156638 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTGCGAGTGCTTAGCCTATCGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGTGCTCAGCCGATCGAAG
* * * * *
28156703 AGGCTGAATGCGCAAGTCGAGACCGACCTGATCACCCCCTGCATGCTGTCGATCCTGCTGTCGCA
66 AGGCTGAATGCACAAGCCGAGACCGACCCGATCACCCCCTACATGCTGTCAATCCTGCTGTCGCA
*
28156768 ACCCTCGGTCCGATCCGATCTTACACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
131 ACCCTCAGTCCGATCCGATCTTACACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
* * * * * *
28156833 GAGTGTACGGGCACT-AAGCCAGTCGAAGAGGCATAATACGTAAGTCGAGGAT-CGATCTGGTCC
196 GAGCGTACGGGCACTGAA-CCAGTCGAAGAGGCATAATACGCAAGCCAAGGATAGGCT-TGGTCC
* * *
28156896 CCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATTCGGCTGGGGCTTAGACAT
259 CCCTCTGCATGCTGCCGATCCCGCTACCACAACCCTCGATTCGGCTGGGGCTTAGACAT
* * * *
28156955 GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGGGCATGC-AG-GCACTCGGCCGATCGG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGTG--CTCAGCCGATCGA
* * *
28157018 AGAGG-TAGAATGCACAAGCCGAGGATCGACCCGGTC-CCCTCTACATGCTGTCAATCCTGCTGT
64 AGAGGCT-GAATGCACAAGCCGA-GACCGACCCGATCACCCCCTACATGCTGTCAATCCTGCTGT
* * * *
28157081 CGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
127 CGCAACCCTCAGTCCGATCCGATCTTACACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
28157146 AAATGAGCGTGCGGGCGCTGAACCGGTCGAAGAGGCATAATGCGCAAGCCAAGGATAGGCTTGGT
192 AAATGAGCGTACGGGCACTGAACCAGTCGAAGAGGCATAATACGCAAGCCAAGGATAGGCTTGGT
* *
28157211 CCCCCTTTGCATGCTGCTGATCCCGCTACCACAACCCTCG
257 CCCCCTCTGCATGCTGCCGATCCCGCTACCACAACCCTCG
28157251 GTCCGACTCA
Statistics
Matches: 253, Mismatches: 37, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
315 1 0.00
316 3 0.01
317 235 0.93
318 14 0.06
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (317 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGTGCTCAGCCGATCGAAG
AGGCTGAATGCACAAGCCGAGACCGACCCGATCACCCCCTACATGCTGTCAATCCTGCTGTCGCA
ACCCTCAGTCCGATCCGATCTTACACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
GAGCGTACGGGCACTGAACCAGTCGAAGAGGCATAATACGCAAGCCAAGGATAGGCTTGGTCCCC
CTCTGCATGCTGCCGATCCCGCTACCACAACCCTCGATTCGGCTGGGGCTTAGACAT
Found at i:28157933 original size:26 final size:26
Alignment explanation
Indices: 28157895--28157945 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28157885 GGCTTAAACT
28157895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28157921 CTTAGACAT-GGAATGAAGTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
28157946 CCATAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28158065 original size:26 final size:26
Alignment explanation
Indices: 28158029--28158081 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28158019 CTAGCCCGAT
28158029 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
28158055 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
28158081 C
1 C
28158082 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:28158556 original size:26 final size:26
Alignment explanation
Indices: 28158520--28158574 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
28158510 TTCTGCGTGC
28158520 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
*
28158546 TGCTTAGACTGGGGATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
28158572 TGC
1 TGC
28158575 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:28159433 original size:26 final size:26
Alignment explanation
Indices: 28159397--28159449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28159387 CCAGTCTGAT
28159397 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
28159423 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
28159449 C
1 C
28159450 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:28159813 original size:26 final size:26
Alignment explanation
Indices: 28159775--28159827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28159765 TGCAAAAAAT
*
28159775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
28159801 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
28159827 C
1 C
28159828 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:28160103 original size:26 final size:26
Alignment explanation
Indices: 28160060--28160114 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
28160050 CTCTGCGTGC
28160060 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
*
28160086 TGCTTAGACTAGGG-ATGAACTCTGTA
1 TGCTTAGACT-GGGAATGAACTCCGTA
28160112 TGC
1 TGC
28160115 CTAGGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:28160309 original size:26 final size:26
Alignment explanation
Indices: 28160271--28160323 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28160261 CTGATTTGAT
28160271 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
28160297 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
28160323 C
1 C
28160324 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28160802 original size:26 final size:26
Alignment explanation
Indices: 28160766--28160824 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
28160756 CTCGATCTGG
*
28160766 TCCG-ATG-TTAGATTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
28160790 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
28160816 TCCGTATGC
1 TCCGTATGC
28160825 CTAAGTCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:28161126 original size:184 final size:183
Alignment explanation
Indices: 28160613--28161167 Score: 641
Period size: 184 Copynumber: 3.0 Consensus size: 183
28160603 TCCGGCTGGG
* * * ** * * *
28160613 GCTTAGACATGGAATGGACTCCCTACACCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
28160678 TCGACCCGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCACTACATGCTATCGATCC
66 TCGACCAGAGAGGCAGAATGCGCAAGCCAGGGAT-AGACCGATCCCCCCTACGTGCTGTCGATCC
* * * * * * *
28160743 TGCTACCGCAACCCTC-GATCTGGTCCGATGTTAGATTGGGAATGAACTCCGTAT
130 TGCTGCTGCAACCCTCAG-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
28160797 GCTTAGACT-GGGGATGAACTCCGTATGCCTAAGTCAATCCCACGAAATGAGCATGCGGGTGCTC
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTC
* * *
28160861 AATCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACTC-AGTCCCCCCTACGTGCTGTCGA
64 AATCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATAGAC-CGA-TCCCCCCTACGTGCTGTCGA
* *
28160925 TCCTACTGCTGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
127 TCCTGCTGCTGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
28160982 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * * *
28161047 TCGGCTGGAGAGGCAGAATGCGCAAGCCAAGGACTGGACCGATCCCCCCTGCGTGCTGTCAATCC
66 TCGACCAGAGAGGCAGAATGCGCAAGCCAGGGA-TAGACCGATCCCCCCTACGTGCTGTCGATCC
* *
28161112 TGCTGCTACAACCCTCAGTCC-AGTTTGATCTTAGACTGGGAATGAACTCCGTAT
130 TGCTGCTGCAACCCTCAGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTAT
28161166 GC
1 GC
28161168 CTAAGTTAAC
Statistics
Matches: 311, Mismatches: 51, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
183 1 0.00
184 156 0.50
185 153 0.49
186 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (183 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATAGACCGATCCCCCCTACGTGCTGTCGATCCT
GCTGCTGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:28161484 original size:158 final size:158
Alignment explanation
Indices: 28160992--28161557 Score: 631
Period size: 158 Copynumber: 3.6 Consensus size: 158
28160982 GCTTAGATAT
* ** *
28160992 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAG
** * * *
28161057 AGGCAGAATGCGCAAGCCAAGGA-CTGGACCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCTAC
66 AGGCAGAATGCGCAAGCCTGGGATC-GGACCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCAC
* *
28161121 AACCCTCAGTCCAGTTTGATCTTAGACTG
130 AACCCTCAGTCTAGTCTGATCTTAGACTG
** * * *
28161150 GGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCAGGCGCTGAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAG
* ** ** * *
28161215 AGGCATAATGCGCAAG-CTGGGGATCGGTTCGATCCTCTTCTACGTGCTGCCGATCCCGCTGCCA
66 AGGCAGAATGCGCAAGCCT-GGGATCGGACCGATCC-CCCCTACGTGCTGTCGATCCTGCTGCCA
* * **
28161279 CAACCCTC-GAT-TCGACTGGGGCTTAGACAT-
129 CAACCCTCAG-TCTAGTCT-GATCTTAGAC-TG
* * * * *
28161309 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGTCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAG
** * * *
28161374 AGGCAGAATAAGCAAGCCTGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACA
66 AGGCAGAATGCGCAAGCCTGGGATCGGACCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACA
28161439 ACCCTCAGTCTAGTCTGATCTTAGACTG
131 ACCCTCAGTCTAGTCTGATCTTAGACTG
* * * * *
28161467 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GAACGCTCAGCCGACCCGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG-GCGCTCAGCCGGCCGGA
* *
28161531 GAGGCAGGATGCGCAAGCCGGGGATCG
65 GAGGCAGAATGCGCAAGCCTGGGATCG
28161558 AACGGGTGGT
Statistics
Matches: 333, Mismatches: 64, Indels: 22
0.79 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 203 0.61
159 124 0.37
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAG
AGGCAGAATGCGCAAGCCTGGGATCGGACCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACA
ACCCTCAGTCTAGTCTGATCTTAGACTG
Found at i:28161557 original size:317 final size:317
Alignment explanation
Indices: 28160982--28161557 Score: 841
Period size: 317 Copynumber: 1.8 Consensus size: 317
28160972 AACTTCGTAT
* * *
28160982 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
** ** * *
28161047 TCGGCTGGAGAGGCAGAATGCGCAAGCCAAGGACTGGACCGATCCCCCCTGCGTGCTGTCAATCC
66 TCGGCCAGAGAGGCAGAATAAGCAAGCCAAGGACTAGACCGATCCCCCCTACGTGCTGTCAATCC
* * *
28161112 TGCTGCTACAACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
131 TGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** * * *
28161177 CCCACGAAATGAGCGTGCAGGCGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGG
196 CCCACGAAACGAGCGTGCAGACGCTCAGCCGACCCGAGAGGCAGAATGCGCAAGCCGGGGATCGG
28161242 TTCGATCCTCTTCTACGTGCTGCCGATCCCGCTGCCACAACCCTCGATTCGACTGGG
261 TTCGATCCTCTTCTACGTGCTGCCGATCCCGCTGCCACAACCCTCGATTCGACTGGG
* * *
28161299 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
** * * *
28161364 TCGGCCAGAGAGGCAGAATAAGCAAGCCTGGGA-TCAGCCCGGTCCCCCCTACGTGCTGTCGATC
66 TCGGCCAGAGAGGCAGAATAAGCAAGCCAAGGACT-AGACCGATCCCCCCTACGTGCTGTCAATC
*
28161428 CTGCTGCCACAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
130 CTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
28161493 ACCCATGAAACGAGCGTGC-GAACGCTCAGCCGACCCGAGAGGCAGGATGCGCAAGCCGGGGATC
195 ACCCACGAAACGAGCGTGCAG-ACGCTCAGCCGACCCGAGAGGCAGAATGCGCAAGCCGGGGATC
28161557 G
259 G
28161558 AACGGGTGGT
Statistics
Matches: 226, Mismatches: 31, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
316 2 0.01
317 224 0.99
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
TCGGCCAGAGAGGCAGAATAAGCAAGCCAAGGACTAGACCGATCCCCCCTACGTGCTGTCAATCC
TGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCAGACGCTCAGCCGACCCGAGAGGCAGAATGCGCAAGCCGGGGATCGG
TTCGATCCTCTTCTACGTGCTGCCGATCCCGCTGCCACAACCCTCGATTCGACTGGG
Found at i:28162473 original size:158 final size:157
Alignment explanation
Indices: 28162282--28162681 Score: 360
Period size: 158 Copynumber: 2.5 Consensus size: 157
28162272 TGAGGATCAG
* ** **
28162282 CCCGATCCCCCCTACATGCTATCGATCTTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
1 CCCGATCCCCCCTACGTGCTGCCGATCCCGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * *
28162347 CGGAATGAACTTCGTATGCATAAGTCAAACC-ATGAAAC-GAGTGTGC-GGCACTGAACCT-GCC
66 -GGAATGAACTCCCTATGCATAAG-CAAACCAAAGAAACGGA-TGTGCGGGCACT-AACCTGGCC
* *
28162408 GGAAAGGCATAATGCGCAAGCCAGGGATTGG
127 GGAAAGGCAGAATGCGCAAGCCAGGGATTGA
* * * * * * * ** *
28162439 CCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACTCTCGGTTCGACTGGGGT-TTAGA
1 CCCGATCCCCC-CTACGTGCTGCCGATCCCGCTGCCGCAACCCTCGGTCCG-GTCCGATCTTAGA
* * * * * *
28162503 CATAGAATGAACTCCCTATGCCTAAGCCAACCAAAGAAATGGATGTGCGGGCACTCAGCTGGCCG
64 C-TGGAATGAACTCCCTATGCATAAGCAAACCAAAGAAACGGATGTGCGGGCACTAACCTGGCCG
* *
28162568 GAGAGGCAGAATGCGCAAGCCGGGGATTGA
128 GAAAGGCAGAATGCGCAAGCCAGGGATTGA
* * ** * * * *
28162598 CCTGGTCCCCCCTACGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCTGGTCTGATCTTAGATT
1 CCCGATCCCCCCTACGTGCTGCCGATCCCGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
*
28162663 GGGAATGAACTCCATATGC
66 -GGAATGAACTCCCTATGC
28162682 TTAGACTGGG
Statistics
Matches: 189, Mismatches: 45, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
157 20 0.11
158 118 0.62
159 51 0.27
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
CCCGATCCCCCCTACGTGCTGCCGATCCCGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGAATGAACTCCCTATGCATAAGCAAACCAAAGAAACGGATGTGCGGGCACTAACCTGGCCGGAA
AGGCAGAATGCGCAAGCCAGGGATTGA
Found at i:28162691 original size:26 final size:26
Alignment explanation
Indices: 28162655--28162707 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28162645 CTGGTCTGAT
*
28162655 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28162681 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28162707 C
1 C
28162708 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28162842 original size:21 final size:21
Alignment explanation
Indices: 28162816--28162864 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
28162806 GATCCTATTT
**
28162816 CTGGTCCTGCTGTCACAACCC
1 CTGGTCCTGCTACCACAACCC
*
28162837 CTGGTCCTGCTACCGCAACCC
1 CTGGTCCTGCTACCACAACCC
28162858 CTGGTCC
1 CTGGTCC
28162865 ACTCTGATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.12, C:0.45, G:0.20, T:0.22
Consensus pattern (21 bp):
CTGGTCCTGCTACCACAACCC
Found at i:28162902 original size:26 final size:26
Alignment explanation
Indices: 28162873--28162925 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28162863 CCACTCTGAT
*
28162873 CTTAGAC-TGGGAATGAACTCCTTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28162899 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28162925 C
1 C
28162926 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28164047 original size:26 final size:26
Alignment explanation
Indices: 28164011--28164063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28164001 TCAGTCCGAT
*
28164011 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
28164037 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
28164063 C
1 C
28164064 CCAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:28164895 original size:159 final size:154
Alignment explanation
Indices: 28164414--28164915 Score: 486
Period size: 159 Copynumber: 3.2 Consensus size: 154
28164404 TGAACATATG
* *
28164414 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTTAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
28164479 CGACTGGAGAGGCAAAGTGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGCGC-CTCGATCCT
65 CGGCTGGAGAGGCAAA-TGTGCAAGCCGGGGATCGA-CCGGTCCCCCCTGCATGCTGTCGATCCT
* * * **
28164543 ACTATCGCAACCCTCGGTCTGATCCAAT
128 GCTACCGCAACCCTCGGTCCG-TCTGAT
**** * * * * *
28164571 CTTAGACTGGAAATGAACAATGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTGAGC
1 CTTAGACTGG-AATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * **
28164636 CGGCTAGAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCTTATGCATGCTGTCGATCC
65 CGGCTGGAGAGGCA-AATGTGCAAGCCGGGGATCGACC-GGTCCCC-CCTGCATGCTGTCGATCC
* * * **
28164701 CGCTGCCAG-AACCCTCGGTCCGACTGGGG
127 TGCTACC-GCAACCCTCGGTCCGTCT-GAT
* * *
28164730 CATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGGTCAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
28164795 CAGGCCGGAGAGGCAGAATGTGGAATCCGGGGGTCGATCCGGTCCCCCCTGCATGCTGTCGATCC
65 C-GGCTGGAGAGGCA-AATGTGCAAGCCGGGGATCGA-CCGGTCCCCCCTGCATGCTGTCGATCC
* *
28164860 TGCTACCGCAACCATCAGTCCAGTCTGAT
127 TGCTACCGCAACCCTCGGTCC-GTCTGAT
28164889 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCATATGC
28164916 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 5 0.02
157 86 0.32
158 10 0.04
159 128 0.47
160 41 0.15
161 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (154 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGCTGGAGAGGCAAATGTGCAAGCCGGGGATCGACCGGTCCCCCCTGCATGCTGTCGATCCTGCT
ACCGCAACCCTCGGTCCGTCTGAT
Found at i:28164918 original size:26 final size:26
Alignment explanation
Indices: 28164889--28164941 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28164879 CCAGTCTGAT
28164889 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28164915 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28164941 C
1 C
28164942 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28165663 original size:26 final size:26
Alignment explanation
Indices: 28165612--28165664 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28165602 GGCTCAAAAT
**
28165612 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
28165638 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
28165664 C
1 C
28165665 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28166150 original size:158 final size:157
Alignment explanation
Indices: 28165638--28166190 Score: 555
Period size: 158 Copynumber: 3.5 Consensus size: 157
28165628 ACTCTGTATG
* *
28165638 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGC
* * * * **
28165703 CGGTCGGAGAGGTAGAATGCACAAGCCGAGGATCAGCCC-AGTCCCCCTTGCATTCTGTTGATCC
66 CGGTCAGAGAGGCAGAATGCACAAGCCG-GGATCAGCCCGA-TCCCCCTTGCGTGCTGCCGATCC
* * * *
28165767 TGCTGCTGTAACCCTAGGTT-CGATCTGAT
129 TACTGCCGCAACCCTCGGTTCCGATC-GAT
* * * * *
28165796 CTTAGA-ATGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * * *
28165860 CCGATC-GAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGGT
65 CCGGTCAG-AGAGGCAGAATGCACAAGCC-GGGATCAGCCCGATCCCCCT-TGCGTGCTGCCGAT
* * * * * * **
28165924 CCCATTACCACAACCCTCGG-TCCGGCTGGGG
127 CCTACTGCCGCAACCCTCGGTTCC-GATCGAT
* * * * *
28165955 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGAGTACGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGC
*
28166020 CGGTCAGAGAGGCAGAATGCACAAGCCTGGGATC-GACCCGATCCCCCTTGTGTGCTGCCGATCC
66 CGGTCAGAGAGGCAGAATGCACAAGCC-GGGATCAG-CCCGATCCCCCTTGCGTGCTGCCGATCC
**
28166084 TACTGCCGCAACCCTCGGTTCCTTTCGAT
129 TACTGCCGCAACCCTCGGTTCCGATCGAT
* * *
28166113 CTTAGA-ATGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
*
28166177 TC-GTCCAGAGAGGC
65 CCGGT-CAGAGAGGC
28166191 CAGCCAGAGA
Statistics
Matches: 320, Mismatches: 62, Indels: 26
0.78 0.15 0.06
Matches are distributed among these distances:
157 7 0.02
158 191 0.60
159 117 0.37
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGC
CGGTCAGAGAGGCAGAATGCACAAGCCGGGATCAGCCCGATCCCCCTTGCGTGCTGCCGATCCTA
CTGCCGCAACCCTCGGTTCCGATCGAT
Found at i:28167141 original size:159 final size:158
Alignment explanation
Indices: 28166816--28167583 Score: 582
Period size: 159 Copynumber: 4.8 Consensus size: 158
28166806 ATGAACTTTG
* * * * * * *
28166816 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAGCCGGA-TGGAGAGGCAGAATACG
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGCC-GACCGAAGAGGCAGAATGCA
* * * * * * * * * *
28166880 TAAGCCGAAGATCGACCCAGTGCCTCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTCTG
65 CAAGCCGAGGATTGACCCGGTTCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCAGTCTG
* ** **
28166945 G-TCCGATCTTAGACTGGGAATGAACTCTG
130 GCT-GGGGCTTAGACTGGGAATGAACTCCC
* * * * * * * * *
28166974 TATGCCTAAGTCAACCCATGAAATGAGTGTGCGGACATTGAGCCGGCC-AGAGAGGCATAATGCG
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGA-AGAGGCAGAATGCA
* * * * * * *
28167038 CAAGCCGGGGA-TGAGCCCGGTCTCCCTCTACCTACTGTCGGTCCTGCTGCCACAACCCTCAGTC
65 CAAGCCGAGGATTGA-CCCGGT-TCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCAGTC
28167102 TGGCTGGGGCTTAGACAT-GGAATGAACTCCC
128 TGGCTGGGGCTTAGAC-TGGGAATGAACTCCC
* * * * * *
28167133 TATGCCTAAGCCAACCCACGAAATGAGCTTGCGGGCGCCT-AGCAGACCGAAAAGGTAGAATGCA
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-ACTGAGCCGACCGAAGAGGCAGAATGCA
* * * * * *
28167197 CAAGTCGAGGATTGACCCGGTCCCCCCTGCGTGGTGTCAATCCTATTGCCGCAACCCTCGAACCA
65 CAAGCCGAGGATTGACCCGGTTCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCT-----CA
* * * ** *
28167262 GTC-CGATCCGATCTTAGACTGGGAATGAACTCCG
125 GTCTGGCT-GGGGCTTAGACTGGGAATGAACTCCC
* * * * * * *
28167296 TATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGGGGCATAATGCGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCAGAATGCAC
* * * * * * * * *
28167361 AAGCCGACGATCGGCCCGGTTCCCCTCTGCATGCTGTCGGTCCCATTGCCACAACCCTCGGTCCG
66 AAGCCGAGGATTGACCCGGTTCCCC-CTGCGTGCTGTCGATCCTACTGCCACAACCCTCAGTCTG
28167426 GCTGGGGCTTAGACAT-GGAATGAACTCCC
130 GCTGGGGCTTAGAC-TGGGAATGAACTCCC
* * * * *
28167455 TATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCACTCAGTCGACC-AGAGAGGCAGAATGCA
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGA-AGAGGCAGAATGCA
* * * * * *
28167519 CAAGCTGGGGATTGACCCGGTTCCCCCTGCGTGCTGACGATCCTGCTGTCGCAACCCTCAGTCTG
65 CAAGCCGAGGATTGACCCGGTTCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCAGTCTG
28167584 ATTCGATCCT
Statistics
Matches: 466, Mismatches: 123, Indels: 42
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 118 0.25
159 209 0.45
160 10 0.02
162 5 0.01
163 95 0.20
164 26 0.06
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCAGAATGCAC
AAGCCGAGGATTGACCCGGTTCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCAGTCTGG
CTGGGGCTTAGACTGGGAATGAACTCCC
Found at i:28167380 original size:322 final size:317
Alignment explanation
Indices: 28166793--28167617 Score: 885
Period size: 322 Copynumber: 2.6 Consensus size: 317
28166783 AACTCCGTAT
* *** * * *
28166793 GCTTAGACATCGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* ** * * ** * * * * * * *
28166858 CCGGA-TGGAGAGGCAGAATACGTAAGCCGAAGATCGACCCAGTGCCTCCTGCGTGCT-ATCGAT
66 TC-GACCAGAAAGGCAGAATGCACAAGCTGAGGATTGACCCGGTCCCCCCTGCGTGCTGA-CAAT
* * * * *
28166921 CCTACTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
129 CCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * **
28166986 AACCCATGAAATGAGTGTGCGGACATTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATG
194 AACCCATGAAACGAGCGTGCGGACACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCGACGATG
* ** *
28167051 AGCCCGG-TCTCCCTCTACCTACTGTCGGTCCTGCTGCCACAACCCTCAGTCTGGCTGGG
259 AGCCCGGTTC-CCCTCTACATACTGTCGGTCCCACTGCCACAACCCTCAGTCCGGCTGGG
* * * *
28167110 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCTTGCGGGCGC-CTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTC-A
* * *
28167174 G-CAGACC-GAAAAGGTAGAATGCACAAG-TCGAGGATTGACCCGGTCCCCCCTGCGTGGTGTCA
65 GTC-GACCAG-AAAGGCAGAATGCACAAGCT-GAGGATTGACCCGGTCCCCCCTGCGTGCTGACA
*
28167236 ATCCTATTGCCGCAACCCTCGAACCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
127 ATCCTACTGCCGCAACCCT-----CAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
28167301 GTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACC-GAAGGGGCATAATGCGCAAGC
187 CTAAGTCAACCCATGAAACGAGCGTGCGGACACTGAGCCGACCAG-AGAGGCATAATGCGCAAGC
* * * *
28167365 CGACGATCG-GCCCGGTTCCCCTCTGCATGCTGTCGGTCCCATTGCCACAACCCTCGGTCCGGCT
251 CGACGAT-GAGCCCGGTTCCCCTCTACATACTGTCGGTCCCACTGCCACAACCCTCAGTCCGGCT
28167429 GGG
315 GGG
* *
28167432 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * *
28167497 TCGACCAGAGAGGCAGAATGCACAAGCTGGGGATTGACCCGGTTCCCCCTGCGTGCTGACGATCC
66 TCGACCAGAAAGGCAGAATGCACAAGCTGAGGATTGACCCGGTCCCCCCTGCGTGCTGACAATCC
* * * * * *
28167562 TGCTGTCGCAACCCTCAGTCTGATTCGATCCTAGATTGGGAATGAACTCCGTATGC
131 TACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
28167618 TTAGACTAGG
Statistics
Matches: 422, Mismatches: 69, Indels: 34
0.80 0.13 0.06
Matches are distributed among these distances:
316 5 0.01
317 145 0.34
321 1 0.00
322 264 0.63
323 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
TCGACCAGAAAGGCAGAATGCACAAGCTGAGGATTGACCCGGTCCCCCCTGCGTGCTGACAATCC
TACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGACACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCGACGATGAG
CCCGGTTCCCCTCTACATACTGTCGGTCCCACTGCCACAACCCTCAGTCCGGCTGGG
Found at i:28167906 original size:343 final size:343
Alignment explanation
Indices: 28167274--28168177 Score: 873
Period size: 343 Copynumber: 2.6 Consensus size: 343
28167264 CCGATCCGAT
* * * * *
28167274 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTCAAC
* * * * *
28167339 CGACCGAAGGGGCATAATGCGCAAGCCGACGATCGGCCCGGTTCCCCTCTGCATGCTGTCGGTCC
66 CGACCGAAGAGGCATAATGCGCAAGCAGACGATCAGCCCGGATCCCCTCTGCATGCTGTCGGCCC
* *
28167404 CATTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * *
28167469 CTCACGAAACGGGCGTACGGGCACTCAGTCGACCAGAGAGGCAGAATGCACAAGCTGGGGATTGA
196 CCCACGAAACGAGCGTACGAGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGA
*
28167534 CCCGGTTCCCCCTGCGTGCTGACGATCCTGCTGTCGCAACCCTCAGTCTGATTCGATCCTAGATT
261 CCCGGTCCCCCCTGCGTGCTGACGATCCTGCTGTCGCAACCCTCAGTCTGATTCGATCCTAGATT
28167599 GGGAATGAACTCCGTATG
326 GGGAATGAACTCCGTATG
* *
28167617 CTTAGACTAGGG-ATGAACTTCGTATGCCTAAGTTAACCCATAAAACGAGCGTACGGGCGCTCAA
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTCAA
* * * * * **
28167681 TCGGCC-TAGAGGCATAATGCGCAAGTCAG-GGATCAGCTC-GATCCCCTGCTGTGTGCTGTCGG
65 CCGACCGAAGAGGCATAATGCGCAAG-CAGACGATCAGCCCGGATCCCCT-CTGCATGCTGTCGG
* *
28167743 CCCCGCTGCCACAACCCTCGGTCCGGCTAGGGGCTTAGAAATGTAATGAACTCCCTATGCCTAAG
128 CCCCACTGCCACAACCCTCGGTCCGGCT-GGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAG
* **
28167808 CCAACCCACGAAATGAGCGTACGAGTGCTCAGCCCG-CC-GAAGAGGCAGAATGCACAAGCCGAG
192 CCAACCCACGAAACGAGCGTACGAGCACTCAG-CCGACCAG-AGAGGCAGAATGCACAAGCCGAG
* *
28167871 GATCGACCCGGTCCCCCCTGCTTGCTGTA-GATCCTGCTGCTTGTCCTACCGTAACCCTC-GATC
255 GATCGACCCGGTCCCCCCTGCGTGCTG-ACGAT-C--CTGC-TG---T--CGCAACCCTCAG-T-
* * * *
28167934 CAGA-TCGATCTTAGACTGGGAATGAACTTCGTATG
308 CTGATTCGATCCTAGATTGGGAATGAACTCCGTATG
* * * * * * *
28167969 CTTAGGCAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTCAA
* * * * * * * ** **
28168033 CCGGCTGGAGAGGTAGAATGTGCAAGCTGGGGATC-GACCC-GATCCCC-CATTGGGTGCTGTCG
65 CCGACCGAAGAGGCATAATGCGCAAGCAGACGATCAG-CCCGGATCCCCTC--TGCATGCTGTCG
** * * * * ** * * *
28168095 ATCCTACTGCCACAACCCTCGGTCCTGTTCGATCTTAG-ACTAGGAATGAACTCCATATGCGTAA
127 GCCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAAAT-GGAATGAACTCCCTATGCCTAA
*
28168159 GTCAACCCACGAAACGAGC
191 GCCAACCCACGAAACGAGC
28168178 ATGCGGGCGT
Statistics
Matches: 462, Mismatches: 73, Indels: 43
0.80 0.13 0.07
Matches are distributed among these distances:
341 7 0.02
342 62 0.13
343 169 0.37
344 7 0.02
346 4 0.01
347 2 0.00
350 1 0.00
351 6 0.01
352 137 0.30
353 67 0.15
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTCAAC
CGACCGAAGAGGCATAATGCGCAAGCAGACGATCAGCCCGGATCCCCTCTGCATGCTGTCGGCCC
CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTACGAGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGA
CCCGGTCCCCCCTGCGTGCTGACGATCCTGCTGTCGCAACCCTCAGTCTGATTCGATCCTAGATT
GGGAATGAACTCCGTATG
Found at i:28168237 original size:352 final size:352
Alignment explanation
Indices: 28167586--28168239 Score: 739
Period size: 352 Copynumber: 1.9 Consensus size: 352
28167576 TCAGTCTGAT
* * **
28167586 TCGATCCTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTT
1 TCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGCC
* * *
28167651 AACCCATAAAACGAGCGTACGGGCGCTCAATCGGCCTAGAGGCATAATGCGCAAGTCAGGGATCA
66 AACCCATAAAACAAGCGTACGGGCGCTCAACCGGCCTAGAGGCAGAATGCGCAAGTCAGGGATCA
* ** * * * * *
28167716 GCTCGATCCCCTGCTGTGTGCTGTCGGCCCCGCTGCCACAACCCTCGGTCCGGCTAGGGGCTTAG
131 GCCCGATCCCCCACTGGGTGCTGTCGACCCCACTGCCACAACCCTCGGTCCGGCTACGAGCTTAG
* * * * * *
28167781 AAATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGAGTGCTCAGCCCGCC
196 AAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAGCCAGCC
* *
28167846 GAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCTTGCTGTAGATCCTGCTGC
261 GAAAAGGCAGAATGCACAAGCAGAGGATCGACCCGGTCCCCCCTGCTTGCTGTAGATCCTGCTGC
28167911 TTGTCCTACCGTAACCCTCGATCCAGA
326 TTGTCCTACCGTAACCCTCGATCCAGA
* * *
28167938 TCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGGC-ATGGAATGAAC-TCTGTATGCCTAAG
1 TCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTTC-GTATGCCTAAG
* * * * * *
28168001 CCAACCCATGAAACAAGCGTGCGGGTGCTCAACCGG-CTGGAGAGGTAGAATGTGCAAG-CTGGG
64 CCAACCCATAAAACAAGCGTACGGGCGCTCAACCGGCCT--AGAGGCAGAATGCGCAAGTC-AGG
* * * * *
28168064 GATC-GACCCGATCCCCCATTGGGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCTG-TTCGA
126 GATCAG-CCCGATCCCCCACTGGGTGCTGTCGACCCCACTGCCACAACCCTCGGTCCGGCTACGA
* * * * * * * *
28168127 TCTTAG-ACTAGGAATGAACTCCATATGCGTAAGTCAACCCACGAAACGAGCATGCGGGCGTTGA
190 GCTTAGAAAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCA
* * * *
28168191 GCCAGCCGAAAAGGTATAATGCACAAGCTAG-GGATCGGCTCGGTCCCCC
254 GCCAGCCGAAAAGGCAGAATGCACAAGC-AGAGGATCGACCCGGTCCCCC
28168240 TCCGTGTGCT
Statistics
Matches: 245, Mismatches: 49, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
351 7 0.03
352 174 0.71
353 64 0.26
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (352 bp):
TCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGCC
AACCCATAAAACAAGCGTACGGGCGCTCAACCGGCCTAGAGGCAGAATGCGCAAGTCAGGGATCA
GCCCGATCCCCCACTGGGTGCTGTCGACCCCACTGCCACAACCCTCGGTCCGGCTACGAGCTTAG
AAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAGCCAGCC
GAAAAGGCAGAATGCACAAGCAGAGGATCGACCCGGTCCCCCCTGCTTGCTGTAGATCCTGCTGC
TTGTCCTACCGTAACCCTCGATCCAGA
Found at i:28168628 original size:159 final size:157
Alignment explanation
Indices: 28168441--28168740 Score: 377
Period size: 159 Copynumber: 1.9 Consensus size: 157
28168431 TTAGACTGGG
* * * * *
28168441 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAGCCTG-CCAGAGA
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GACCAGAGA
* * ** * ** *
28168505 GGCATAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACCTGCTGTCGGTCCCGCTGCCACA
65 GGCAGAATGCGCAACCCGGGGATCGACCCGGT-CCCC-CTACCTGCTACCGATCCCGCTGCCACA
28168570 ACCCTCGGTCCGGTTGAGGGTTAGACAAGT
128 ACCCTCGGTCCGGTTGAGGGTTAGACAAGT
* * * * *
28168600 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGTCGATCGGAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAG
* * *
28168665 GCAGAATGCGCAACCCGGGGATCGACCCGGTCCCCCTGCGTGCTACCGATCCTGCTGCCACAACC
66 GCAGAATGCGCAACCCGGGGATCGACCCGGTCCCCCTACCTGCTACCGATCCCGCTGCCACAACC
28168730 CTCGGTCCGGT
131 CTCGGTCCGGT
28168741 CTGATCTTGG
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
157 35 0.29
158 5 0.04
159 79 0.66
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.18
Consensus pattern (157 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAG
GCAGAATGCGCAACCCGGGGATCGACCCGGTCCCCCTACCTGCTACCGATCCCGCTGCCACAACC
CTCGGTCCGGTTGAGGGTTAGACAAGT
Found at i:28169143 original size:26 final size:26
Alignment explanation
Indices: 28169114--28169166 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28169104 CTGGTCCGAT
* *
28169114 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAAATCCGTATG
28169140 CTTAGACATGGAATGAAATCCGTATG
1 CTTAGACATGGAATGAAATCCGTATG
28169166 C
1 C
28169167 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:28169556 original size:159 final size:158
Alignment explanation
Indices: 28169139--28169589 Score: 408
Period size: 159 Copynumber: 2.8 Consensus size: 158
28169129 AACTCTGTAT
*
28169139 GCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGTGCGGGTGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-G-GT--GTGCGGGTGC
* * * *
28169204 TCAACCGGA-CGAAAAGGTAGAATGCGCAAGACGGGGATCGACACGGTTCCCCCTACATACTGTC
62 TCAGCC-GACCGAAGAGGCAGAATGCGCAAGACGGGGATCGACACGGTCCCCCCTACATACTGTC
* * * *
28169268 GATCCTGCTGTCGCAACCCTCAGTCCAGTCTGA
126 GATCCCGCTGCCACAACCCTCAGTCCAGCCTGA
* * * * * * ** *
28169301 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCA
* ** * * *** * *
28169365 GCCGACCGAAGAGGCATAATGCGCAACCCGGGGATTGGC-CTGGTCCCCCTCTGTGTGCTGTCGG
65 GCCGACCGAAGAGGCAGAATGCGCAAGACGGGGATCGACAC-GGTCCCCC-CTACATACTGTCGA
*
28169429 TCCCGCTGCCACAACCCTCAGTTC-GACCGTG-
128 TCCCGCTGCCACAACCCTCAGTCCAG-CC-TGA
*
28169460 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAG
* * * * * * * * * * *
28169525 TCGACCGGAGAGGCAGAATGTGAAAGTCGGGGATCGGCTCAGTCCCCCCTGCCTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGACGGGGATCGACACGGTCCCCCCTACATACTGTCGATCC
28169590 TACTGTCGGA
Statistics
Matches: 230, Mismatches: 51, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 60 0.26
159 120 0.52
160 5 0.02
161 1 0.00
162 41 0.18
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGACGGGGATCGACACGGTCCCCCCTACATACTGTCGATCC
CGCTGCCACAACCCTCAGTCCAGCCTGA
Found at i:28175157 original size:159 final size:159
Alignment explanation
Indices: 28174864--28175354 Score: 340
Period size: 159 Copynumber: 3.1 Consensus size: 159
28174854 GCGTAGACAT
* * * * *
28174864 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGTGCTTAACCGATCAGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTTAACCGACCAAAG
* ** * * **
28174929 AGGAAGAATGCGCAAGCTGGGGATCGGCCAGGTCACCCTCTGCGTGCTGTTGATCCTGCTGTCGT
66 AGGAAGAATGCGCAAGCTGGGGATCGGCCAGATCACCCTCTGCGTGCTACTGATCCCGCTGCCAC
28174994 AACCCTTGGTCTGGTCCGATCATAGACTG
131 AACCCTTGGTCTGGTCCGATCATAGACTG
* * *
28175023 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCG-TTGAGCCGACCAAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTT-AACCGACCAAA
* * * ** * * *
28175087 GAGGCATAATGTGCAAG-TAGGGGATCAGTTC-GATCCCCCTCTGCGTGTTACTGGTCCCGCTGC
65 GAGGAAGAATGCGCAAGCT-GGGGATC-GGCCAGATCACCCTCTGCGTGCTACTGATCCCGCTGC
** * ** *
28175150 CACAACCCTCAGTCTGG-CTGGGGCTTAGACAT-
128 CACAACCCTTGGTCTGGTC-CGATCATAGAC-TG
* * * * ** * * ** *
28175182 GGAATGAACTCCCTATG---AAGCCAACCAATGAAACGGGCATGTGGGCGCTCAACCGGCCGGAT
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTTAACCGACCAAAG
** ** * * *
28175244 AGGCAA-AATGCGCAAGCTGATGATCGGCCCTATC-CCCCCTGCGTGCT-GTCGATCCTGCTGCC
66 AGG-AAGAATGCGCAAGCTGGGGATCGGCCAGATCACCCTCTGCGTGCTACT-GATCCCGCTGCC
* *** * * *
28175306 -CTAACCCTCGGTCCAATGCGATCTTAGAATG
129 AC-AACCCTTGGTCTGGTCCGATCATAGACTG
28175337 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
28175355 TTAGACTAGG
Statistics
Matches: 253, Mismatches: 65, Indels: 31
0.72 0.19 0.09
Matches are distributed among these distances:
154 3 0.01
155 56 0.22
156 50 0.20
157 3 0.01
158 4 0.02
159 134 0.53
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTTAACCGACCAAAG
AGGAAGAATGCGCAAGCTGGGGATCGGCCAGATCACCCTCTGCGTGCTACTGATCCCGCTGCCAC
AACCCTTGGTCTGGTCCGATCATAGACTG
Found at i:28175759 original size:26 final size:26
Alignment explanation
Indices: 28175708--28175760 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28175698 CCGGTTCGAT
*
28175708 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
28175734 CTTAGACGT-GGAATGAACTTCATATG
1 CTTAGAC-TAGGAATGAACTCCATATG
28175760 C
1 C
28175761 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28176259 original size:26 final size:26
Alignment explanation
Indices: 28176208--28176260 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28176198 CCGGTCTGAT
* *
28176208 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
28176234 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
28176260 C
1 C
28176261 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:28176970 original size:26 final size:26
Alignment explanation
Indices: 28176932--28176984 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28176922 GGCTGACACT
*
28176932 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28176958 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28176984 C
1 C
28176985 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28177253 original size:12 final size:12
Alignment explanation
Indices: 28177233--28177273 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
28177223 TCCCCCTGCG
28177233 TGCTGTCGATCT
1 TGCTGTCGATCT
*
28177245 TGTTGTCGATCT
1 TGCTGTCGATCT
28177257 TGCTGTCGATCT
1 TGCTGTCGATCT
28177269 TGCTG
1 TGCTG
28177274 CCGCAACCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.07, C:0.22, G:0.27, T:0.44
Consensus pattern (12 bp):
TGCTGTCGATCT
Found at i:28177522 original size:26 final size:26
Alignment explanation
Indices: 28177493--28177545 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28177483 CCAGTCTGAT
*
28177493 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAAAGAACTCCATATG
*
28177519 CTTAGACATGGAAAGAACTCCGTATG
1 CTTAGACATGGAAAGAACTCCATATG
28177545 C
1 C
28177546 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCATATG
Found at i:28177772 original size:158 final size:159
Alignment explanation
Indices: 28177518--28178126 Score: 577
Period size: 158 Copynumber: 3.8 Consensus size: 159
28177508 AACTCCATAT
* * * * *
28177518 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGGGCACTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTAAG
* * * * * * *
28177583 CTGATCGAAGAGGTAGTATGTGCAAGCCGGGGACCGGCCCGATCCCCCCTACGTGCTATCAGTCC
66 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTATCAGTCC
* *
28177648 TGCTGCCACAACCCTTGGTTTGGTCT-GA
131 TGCTGCCACAACCCTCGGTTTGGTCTGGG
* * * *
28177676 TCTTAGAC-TAGGAATGAACTCCTTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTAA
* * * *
28177740 GCCGATCGGAGAGG-CGTAATGCGCAAGCCGGGGATCAGCCCGATCCCCTTCTGCGTGCTGTCGA
65 GCCGACCGGAGAGGTAG-AATGCGCAAGCCGGGGATCAGCCCGATCCCC-CCTACGTGC--T--A
*
28177804 TCCCACTACCGATCCTGCTGCCACAACCCTCGGTTCGGT-TGGG
124 T----C-A--G-TCCTGCTGCCACAACCCTCGGTTTGGTCTGGG
* ** **
28177847 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACCAGCGTGCGGGCGCCCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTAAG
* * * * * * *
28177912 CAGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGTCCGGTCCCCCTCTGCGTGCTACCGGT-
66 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTATCAGTC
* *
28177976 CTCGCTGCCACAACCCTCGGTCT-GACTGGG
130 CT-GCTGCCACAACCCTCGGTTTGGTCTGGG
* * * *
28178006 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATG-AATGGGCGTGCGGGCTCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTAAG
* * * * * *
28178070 -CTAGCCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGATCCCCCCTACGTGCT
66 CCGA-CCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCT
28178127 TCCGATCTTG
Statistics
Matches: 368, Mismatches: 61, Indels: 45
0.78 0.13 0.09
Matches are distributed among these distances:
157 11 0.03
158 146 0.40
159 71 0.19
160 1 0.00
161 1 0.00
163 3 0.01
167 2 0.01
168 1 0.00
169 1 0.00
170 2 0.01
171 127 0.35
172 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTAAG
CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTATCAGTCC
TGCTGCCACAACCCTCGGTTTGGTCTGGG
Found at i:28178116 original size:329 final size:329
Alignment explanation
Indices: 28177518--28178116 Score: 742
Period size: 329 Copynumber: 1.8 Consensus size: 329
28177508 AACTCCATAT
** * * *
28177518 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGGGCACTAAG
1 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTGCGGGCACCAAG
* * * * * *
28177583 CTGATCGAAGAGGTAGTATGTGCAAGCCGGGGACCGGCCCGATCCCCCCTACGTGCTATCAGTCC
66 CAGACCGAAGAGGTAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCCCTACGTGCTACCAGTCC
* * * * * *
28177648 TGCTGCCACAACCCTTGGTTTGGTCTGATCTTAGACTAGGAATGAACTCCTTATGCCTAAGTCAA
131 TGCTGCCACAACCCTCGGTCTGGACTGAGCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
28177713 CCCATAAAATGAGCGTGCGGGCGCTAAGCCGATCGGAGAGGCGTAATGCGCAAGCCGGGGATCAG
196 CCCATAAAATGAGCGTGCGGGCGCTAAGCAGACCAGAGAGGCGTAATGCACAAGCCAGGGATCAG
28177778 CCCGATCCCCTTCTGCGTGCTGTCGATCCCACTACCGATCCTGCTGCCACAACCCTCGGTTCGGT
261 CCCGATCCCCTTCTGCGTGCTGTCGATCCCACTACCGATCCTGCTGCCACAACCCTCGGTTCGGT
28177843 TGGG
326 TGGG
* * * * *
28177847 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACCAGCGTGCGGGCGCCCAG
1 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTGCGGGCACCAAG
* * * * * * *
28177912 CAGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGTCCGGTCCCCCTCTGCGTGCTACCGGT-
66 CAGACCGAAGAGGTAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCC-CTACGTGCTACCAGTC
*
28177976 CTCGCTGCCACAACCCTCGGTCT-GACTGGGGCTTAGAC-ATGGAATGAACTCCATATGCCTAAG
130 CT-GCTGCCACAACCCTCGGTCTGGACT-GAGCTTAGACTA-GGAATGAACTCCATATGCCTAAG
* * * *
28178039 CCAACCCAT-GAATGGGCGTGCGGGCTCTTAGCTAG-CCAGAGAGGCAG-AATGCACAAGCCAGG
192 CCAACCCATAAAATGAGCGTGCGGGCGCTAAGC-AGACCAGAGAGGC-GTAATGCACAAGCCAGG
*
28178101 GATCAGCTCGATCCCC
255 GATCAGCCCGATCCCC
28178117 CCTACGTGCT
Statistics
Matches: 224, Mismatches: 40, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
329 154 0.69
330 70 0.31
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (329 bp):
GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTGCGGGCACCAAG
CAGACCGAAGAGGTAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCCCTACGTGCTACCAGTCC
TGCTGCCACAACCCTCGGTCTGGACTGAGCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
CCCATAAAATGAGCGTGCGGGCGCTAAGCAGACCAGAGAGGCGTAATGCACAAGCCAGGGATCAG
CCCGATCCCCTTCTGCGTGCTGTCGATCCCACTACCGATCCTGCTGCCACAACCCTCGGTTCGGT
TGGG
Found at i:28178118 original size:159 final size:159
Alignment explanation
Indices: 28177820--28178126 Score: 399
Period size: 159 Copynumber: 1.9 Consensus size: 159
28177810 TACCGATCCT
** * *
28177820 GCTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAAC
1 GCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * *
28177885 CCATGAAACCAGCGTGCGGGCGCCCAGCAGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGT
66 CCATGAAACCAGCGTGCGGGCGCCCAGCAGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAGT
*
28177950 CCGGTCCCCCTCTGCGTGCTACCGGTCTC
131 CCGATCCCCCTCTGCGTGCTACCGGTCTC
28177979 GCTGCCACAACCCTCGG-TCTGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTTC-GACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
*** * **
28178043 CCCATG-AATGGGCGTGCGGGCTCTTAGCTAG-CCAGAGAGGCAGAATGCACAAGCCAGGGATCA
65 CCCATGAAACCAGCGTGCGGGCGCCCAGC-AGACCAGAGAGGCAGAATGCACAAGCCAGGGATCA
*
28178106 G-CTCGATCCCCC-CTACGTGCT
129 GTC-CGATCCCCCTCTGCGTGCT
28178127 TCCGATCTTG
Statistics
Matches: 128, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
157 9 0.07
158 54 0.42
159 65 0.51
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCATGAAACCAGCGTGCGGGCGCCCAGCAGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAGT
CCGATCCCCCTCTGCGTGCTACCGGTCTC
Found at i:28178363 original size:26 final size:26
Alignment explanation
Indices: 28178334--28178385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28178324 CCAGTCCGAT
28178334 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28178360 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28178386 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28178717 original size:26 final size:26
Alignment explanation
Indices: 28178688--28178739 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28178678 TCGGTCCGAT
28178688 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28178714 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28178740 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28178858 original size:354 final size:353
Alignment explanation
Indices: 28178006--28178898 Score: 929
Period size: 354 Copynumber: 2.5 Consensus size: 353
28177996 TCTGACTGGG
* * * *
28178006 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATG-AATGGGCGTGCGGGCTCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
** * ** * *
28178070 CTAGCCAGAGAGGCAGAATGCACAAGCCAGGGATC-AGCTCGATCCCCCCTACGTGCTTCCGATC
66 CCCGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGATCCCCCCTACGTGCTACCGATC
* * * * * * * *
28178134 TTGCTATCGTAACCCTCAATCCGATTAGATATGAGACTGGGGATGAACTTCGTATGCCTAAGTCA
130 ATGCTCTCGTAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAAC-TCCTATGCCTAAGTCA
* * * * * * * *
28178199 ACCCACGAAACAAGCGTGCAGGCATTCAGTAGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCG
194 ACCCACAAAACAAGCGTACAGGCACTCAGCAGACCGAAAAGGCACAATGCGCAAGCCAAGGATCA
* * * *
28178264 GCCCAGTGCCCCTTGCGTGTTGTCGATCCTACTACTGGTCCTGCTACCGCAACCCTCGGTCCAGT
259 GCCCAGTGCCCCCTGCATGCTGTCGATCCTACTACTGGTCCTGCTACCGCAACCCTCGATCCAGT
28178329 CCGATCTTAGACTAGGAATGAACTCCGTAT
324 CCGATCTTAGACTAGGAATGAACTCCGTAT
* * * * *
28178359 GCTTAGACATGGAATGAACTTCGTATGTCTAAGCCAACCCACGAAATTAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * ** * *
28178424 -CCGATC-GAAGAGGCAGAATGCGCAAG-TCGGGGACCGGCCCAATCCCCCCTGTGTGCTATCAA
66 CCCG-CCAG-AGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCCCCCTACGTGCTACCGA
* * * *
28178486 TCATGCTAC-CGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCTATGCCTAAGT
128 TCATGCT-CTCGTAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCTATGCCTAAGT
* ** * * * * * *** *
28178550 CAACCCATAAAATGAGCGTACGGGCGCTGAGCCGATCGGTGAGGCACAATGCGCAAGCTAAGGAT
192 CAACCCACAAAACAAGCGTACAGGCACTCAGCAGACCGAAAAGGCACAATGCGCAAGCCAAGGAT
* * * *
28178615 CAGCCCGGT-CCTACCCTGCATGCTGTCGATCCTGC-AGCTGGTCCTGCTATCGTAACCCTCGAT
257 CAGCCCAGTGCC--CCCTGCATGCTGTCGATCCTACTA-CTGGTCCTGCTACCGCAACCCTCGAT
* * *
28178678 TCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
319 CCAGTCCGATCTTAGACTAGGAATGAACTCCGTAT
* * **
28178713 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGTATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
28178778 CCCGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTTCTGCCGATCC
66 CCCGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCA
* * * *
28178843 TACTCTCGCAACCCTCGATCCGATCTGATCTTAGGCTGGGAATGAACTCCGTATGC
131 TGCTCTCGTAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCC-TATGC
28178899 TTAGACTGGG
Statistics
Matches: 432, Mismatches: 94, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
352 2 0.00
353 109 0.25
354 311 0.72
355 10 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (353 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCCGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCA
TGCTCTCGTAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCTATGCCTAAGTCAAC
CCACAAAACAAGCGTACAGGCACTCAGCAGACCGAAAAGGCACAATGCGCAAGCCAAGGATCAGC
CCAGTGCCCCCTGCATGCTGTCGATCCTACTACTGGTCCTGCTACCGCAACCCTCGATCCAGTCC
GATCTTAGACTAGGAATGAACTCCGTAT
Found at i:28178901 original size:26 final size:26
Alignment explanation
Indices: 28178872--28178924 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28178862 CCGATCTGAT
*
28178872 CTTAGGCTGGGAATGAA-CTCCGTATG
1 CTTAGACTGGGAAT-AATCTCCGTATG
*
28178898 CTTAGACTGGGGATAATCTCCGTATG
1 CTTAGACTGGGAATAATCTCCGTATG
28178924 C
1 C
28178925 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAATCTCCGTATG
Found at i:28179600 original size:26 final size:26
Alignment explanation
Indices: 28179558--28179610 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28179548 CCGATCTGAT
28179558 CTTAGACTGAGGGTGAACACCGTATG
1 CTTAGACTGAGGGTGAACACCGTATG
*
28179584 CTTAGACTG-GGGATGAACTCCGTATG
1 CTTAGACTGAGGG-TGAACACCGTATG
28179610 C
1 C
28179611 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGGGTGAACACCGTATG
Found at i:28179964 original size:26 final size:26
Alignment explanation
Indices: 28179925--28179977 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28179915 CCAGTCCGAT
* * * *
28179925 CTTAGACTTTGAATGAGCTTCGTATG
1 CTTACACTTGGAATGAACTCCGTATG
28179951 CTTACACTTGGAATGAACTCCGTATG
1 CTTACACTTGGAATGAACTCCGTATG
28179977 C
1 C
28179978 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
CTTACACTTGGAATGAACTCCGTATG
Found at i:28181010 original size:157 final size:157
Alignment explanation
Indices: 28180717--28181236 Score: 523
Period size: 159 Copynumber: 3.2 Consensus size: 157
28180707 CTGCTACCGT
* *
28180717 AACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCTCATGCTTATGCCTAAGCCAAACC
1 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACT-C-C--G--TATGCCTAAGCC-AACC
* * *
28180782 CACGAAATGAACGTG-GCAGCTCTTAGCCGG-TCGAAGAGGCAAAATGAGCAAGTCGGGGATCGA
59 CACGAAATGAGCGTGCG-GGCGCTTAGCCGGCT-GAAGAGGCAAAATGAGCAAGTCGGGGATCGA
* *
28180845 CCCGGT-CCCCCTACGTCCTATCGATCCTGCTGCCGC
122 CCC-GTCCCCCCTACGTGCTATCGATCCTACTGCCGC
* *
28180881 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAA
1 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * *
28180946 TGAGCGTGCGGGCGCTAAGCCGGCTGAAGAGGCATAATGTGCAAGTCGGGGATCGACCCAGTCCC
66 TGAGCGTGCGGGCGCTTAGCCGGCTGAAGAGGCAAAATGAGCAAGTCGGGGATCGACCC-GTCCC
* *
28181011 CCTCTGCGTGCTATCGAT-CTCACTGCCAC
130 CC-CTACGTGCTATCGATCCT-ACTGCCGC
* * ** * *
28181040 AACCCTCGATCTG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 AACCCTCGATCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * * * * * * *
28181103 AATGGGTGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATC
64 AATGAGCGTGCGGGCGCTTAGCCGGCTGAAGAGGCAAAATGAGCAAGTCGGGGATCGACCCG-TC
* *
28181168 CCCCCTACGTGCTGTCGATCCTACTGTCGC
128 CCCCCTACGTGCTATCGATCCTACTGCCGC
* * *
28181198 AACCTTCGGTCC-AGTTTGATCTTAGACTGGGAATGAACT
1 AACCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACT
28181237 TCATATGCTT
Statistics
Matches: 299, Mismatches: 45, Indels: 30
0.80 0.12 0.08
Matches are distributed among these distances:
157 62 0.21
158 68 0.23
159 128 0.43
160 2 0.01
162 1 0.00
163 1 0.00
164 37 0.12
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
TGAGCGTGCGGGCGCTTAGCCGGCTGAAGAGGCAAAATGAGCAAGTCGGGGATCGACCCGTCCCC
CCTACGTGCTATCGATCCTACTGCCGC
Found at i:28181254 original size:26 final size:26
Alignment explanation
Indices: 28181218--28181270 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28181208 CCAGTTTGAT
*
28181218 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28181244 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28181270 C
1 C
28181271 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28182571 original size:159 final size:156
Alignment explanation
Indices: 28182316--28182822 Score: 554
Period size: 159 Copynumber: 3.2 Consensus size: 156
28182306 AACTCCGTAT
* * * *
28182316 TCTTACACATGGAATGAAC-CCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGACGCTCA
1 TCTTAGAC-TGGAATGAACTCC-GTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
28182380 GCCAGTTGGAGAGGCAGAATGCGTAAGTCGGGGACCGAC-CTGATCACCCCCTGCATGTTATCGA
63 GCCAGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GATC-CCCCCTGCGTGCTATCGA
* * * *
28182444 TCCTACTATCGCAACCCTCGGTCTGGTCTAG
126 TCCTGCTACCACAACCCTCGGTCCGGTCTAG
* * *
28182475 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 TCTTAGACT-GGAATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
28182540 CCAGTTGGAGAGGCATAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGGTC
64 CCAGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTGCGTGCTATCGATC
* *
28182605 CCGCTGCCACAACCCTCGGTCCGGT-TAGG
128 CTGCTACCACAACCCTCGGTCCGGTCTA-G
* * * *
28182634 GCTTAGACATGGAATGAACTCCCTATGCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAGC
1 TCTTAGAC-TGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
28182699 CGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGTTCGATCCCCCCTGCGTGCTATCGATCCT
65 CAGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCCT
* *
28182764 GCTACCACAACCCTCGGTCCAGTC-CG
130 GCTACCACAACCCTCGGTCCGGTCTAG
*
28182790 ATCTTAGACTAGGAATGAACTTCGTATGCTAAG
1 -TCTTAGACT-GGAATGAACTCCGTATGCTAAG
28182823 ACTAGGGATG
Statistics
Matches: 292, Mismatches: 47, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
156 2 0.01
157 63 0.22
158 80 0.27
159 143 0.49
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
TCTTAGACTGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
AGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCCTG
CTACCACAACCCTCGGTCCGGTCTAG
Found at i:28182833 original size:26 final size:27
Alignment explanation
Indices: 28182795--28182849 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
28182785 GTCCGATCTT
28182795 AGACTAGGAATGAACT-TCGTATG-CTA
1 AGACTAGGAATGAACTCT-GTATGCCTA
*
28182821 AGACTAGGGATGAACTCTGTATGCCTA
1 AGACTAGGAATGAACTCTGTATGCCTA
28182848 AG
1 AG
28182850 TCAACCCACG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (27 bp):
AGACTAGGAATGAACTCTGTATGCCTA
Found at i:28183236 original size:341 final size:350
Alignment explanation
Indices: 28182608--28183257 Score: 802
Period size: 341 Copynumber: 1.9 Consensus size: 350
28182598 GTCGGTCCCG
*
28182608 CTGCCACAACCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTCCCTATGCTAAGCCAACCC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCTAAGCCAACCC
* * * * * * * **
28182673 ACGAAACGGGCGTGCGGGCGCTTAGCCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGTTC
66 ACGAAACGGACATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCC
28182738 GATCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTAGG
131 GAT--CCCCTGCGT-CTATCGATCCTGCTA-CACAACCCTCGGTCCAGTCCGATCTTAGACTAGG
* *
28182803 AATGAACTTCGTATGCTAAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
192 AATGAACTTCGTATGCTAAGACTAGGGATAAACTCTGTATGCCTAAGTCAACACACGAAACGAGC
* ** * ** * * *
28182868 GTGTGGGTGCTCAGTCGGCCGGAGAGGCATAATGCGTAAGCCGGGGATTAGCCCGGTCCCCTTCT
257 GTGCGGACGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCCGGTCCCCTTCT
28182933 ATGTGCTACCGATCCCGCTACCGGTCCTA
322 ATGTGCTACCGATCCCGCTACCGGTCCTA
* * *
28182962 CTGCCACAACCCTC-GTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATG-CTAAGCCAACC
*
28183026 CATGAAACGGACATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAG-TCGAGGATCGGC
65 CACGAAACGGACATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCT-GAGGATCGGC
* * *** *** *
28183090 CCGGT-CCCT-C-T-TAT-G-TGCTG-T-TGTAACCCTC-GTTTGGTTCGATCTTAGACTAGGAA
129 CCGATCCCCTGCGTCTATCGATCCTGCTACACAACCCTCGGTCCAGTCCGATCTTAGACTAGGAA
* * *
28183146 TGAACTTCGTATGCTTAGACT-GTGGATAAACTCTGTATGCTTAAGTCAACACATGAAACGAGCG
194 TGAACTTCGTATGCTAAGACTAG-GGATAAACTCTGTATGCCTAAGTCAACACACGAAACGAGCG
* *
28183210 TGCGTACGCTCAGCCAACTAGAGAGGCAGAATGCGCAAGCCGGGGATT
258 TGCGGACGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATT
28183258 GAACGGGTGG
Statistics
Matches: 254, Mismatches: 39, Indels: 19
0.81 0.12 0.06
Matches are distributed among these distances:
340 1 0.00
341 115 0.45
342 7 0.03
344 1 0.00
345 4 0.02
346 1 0.00
347 3 0.01
349 1 0.00
350 1 0.00
351 4 0.02
353 36 0.14
354 80 0.31
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (350 bp):
CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCTAAGCCAACCC
ACGAAACGGACATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCC
GATCCCCTGCGTCTATCGATCCTGCTACACAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATG
AACTTCGTATGCTAAGACTAGGGATAAACTCTGTATGCCTAAGTCAACACACGAAACGAGCGTGC
GGACGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCCGGTCCCCTTCTATGT
GCTACCGATCCCGCTACCGGTCCTA
Found at i:28184405 original size:26 final size:26
Alignment explanation
Indices: 28184376--28184428 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
28184366 TCGGTCTGAT
28184376 CTTAGAC-TGGGAATGAACT-TCGTATG
1 CTTAGACAT-GGAATGAACTCT-GTATG
28184402 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
28184428 C
1 C
28184429 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:28184754 original size:159 final size:156
Alignment explanation
Indices: 28184402--28184866 Score: 363
Period size: 156 Copynumber: 2.9 Consensus size: 156
28184392 ACTTCGTATG
** *
28184402 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
28184467 CGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCTACGTGCTGTCGATCCTAC
66 AGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCTACGTGCTGTCGATCCTAC
* *
28184532 TACCGCAACCCTCAGTTTGGTCCGAT
131 TACCACAACCCTCAGTCTGGTCCGAT
* * * * * *
28184558 CTTAGAC-TGTGAATGAACTTCTTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAG
1 CTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
28184622 CTAG-TCGGAGAGGCATAATGTGCAAGCTGGGGATTGACCTGGTCCCCCTCTACGTGCTG-CTGG
65 C-AGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGT--CCC-CTACGTGCTGTC-GA
* * ** ** *
28184685 T-CTCGCTGCCACAA-CCTTTGATCTGGCTGGGGT
125 TCCT-ACTACCACAACCCTCAG-TCTGG-TCCGAT
** * * * * **
28184718 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTGCTTAAAAGGGCGTACGGGTACTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-GAAACGAGCGTGCGGGCGCTCAG
* * *
28184782 CCAG-TCGAAGAGGCAGAATGCT-CAAGCCGGGGATC-AGCCTGGTCCCTCTTGCGTGCTGTCGA
65 -CAGACCGAAGAGGCAGAATG-TGCAAGCCGGGGATCGA-CCCGGTCCC-C-TACGTGCTGTCGA
* * * *
28184844 TCCTATTATCGCAATCCTCAGTC
125 TCCTACTACCACAACCCTCAGTC
28184867 CAGTCCAATG
Statistics
Matches: 242, Mismatches: 49, Indels: 33
0.75 0.15 0.10
Matches are distributed among these distances:
155 2 0.01
156 87 0.36
157 1 0.00
158 15 0.06
159 73 0.30
160 62 0.26
161 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
AGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCTACGTGCTGTCGATCCTAC
TACCACAACCCTCAGTCTGGTCCGAT
Found at i:28186097 original size:26 final size:26
Alignment explanation
Indices: 28186046--28186098 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28186036 CTGATCCGAT
*
28186046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28186072 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28186098 C
1 C
28186099 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28186752 original size:26 final size:26
Alignment explanation
Indices: 28186714--28186766 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28186704 GGCTCAAAGT
*
28186714 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28186740 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28186766 C
1 C
28186767 CTAACCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28187102 original size:159 final size:158
Alignment explanation
Indices: 28186739--28187102 Score: 376
Period size: 158 Copynumber: 2.3 Consensus size: 158
28186729 AACTTCGTAT
* * * *
28186739 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCAC-AGAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA-AACAAGCGTGCGGGCGCTCA
*** * *
28186803 ACCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGTTGTTGATC
65 ACCAACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCATGCTGTTGATC
* * * *
28186868 CTGCTGCCACAACCCTTGGTCTGGTCCGA
130 CCGCTCCCACAACCCTCGGTCTGCTCCGA
* * * * * * * *
28186897 TCTCAGA-TTAGGAATGAACTCCCTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
* * * * * *
28186961 ACCAACC-GAAGAGGCATAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCTCTGCGTGCTGTTGG
65 ACCAACCAG-AGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCC-CTGCATGCTGTTGA
* *
28187025 TCCCGCTCCCACAACCCTCGGTCTAGCT-GGG
128 TCCCGCTCCCACAACCCTCGGTCT-GCTCCGA
* *
28187056 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCACGAAAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
28187103 GGGCATGTGG
Statistics
Matches: 163, Mismatches: 37, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 87 0.53
159 71 0.44
160 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
CCAACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCATGCTGTTGATCC
CGCTCCCACAACCCTCGGTCTGCTCCGA
Found at i:28187250 original size:26 final size:26
Alignment explanation
Indices: 28187214--28187266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28187204 CCGATCTGAT
*
28187214 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
28187240 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
28187266 C
1 C
28187267 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:28187643 original size:26 final size:26
Alignment explanation
Indices: 28187592--28187644 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28187582 CCGGTCCAAT
* *
28187592 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
28187618 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
28187644 C
1 C
28187645 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Done.