Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 298 of 402
Found at i:28187976 original size:26 final size:26
Alignment explanation
Indices: 28187947--28187999 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28187937 CCAGTCTGAT
*
28187947 CTTAAAC-TGGGAATGAACTCTGTATG
1 CTTAAACAT-GGAATGAACTCCGTATG
*
28187973 CTTAGACATGGAATGAACTCCGTATG
1 CTTAAACATGGAATGAACTCCGTATG
28187999 C
1 C
28188000 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTATG
Found at i:28188052 original size:355 final size:357
Alignment explanation
Indices: 28187185--28188182 Score: 1057
Period size: 355 Copynumber: 2.7 Consensus size: 357
28187175 CTGTCGATAT
* * *
28187185 TGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAAC-TG
1 TGCTGCCGCAACCCTCGGTCCG-TCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACAT-
* * * * *
28187249 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAACCGGCCGGAG
64 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGGCTGGAG
* * * * * *
28187314 AGGCATAATGCACAAGCCGAGGA-TCAGCTCGGTCCCTCTCTGCGTGCTGCTGATCCTGCTACCG
129 AGGTAGAATGCACAAGCCGGGGACT-GGCCCGGTCCC-CTCTGC--G-TGCT-AT-C-GAT-CC-
* * * * *
28187378 ATCGTGCTGCCACAACCCTCGGTCTGATTGAGGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
184 -T-GT--TGCCACAACCCTCAGTCCGGTCGA-TCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* * * * * * * * *
28187442 GCCAACCCACAAAATGAGCGTGCTGGTGCTCGGCCGGTCGAAGAGGCAGAATACGCAAGCCGGGG
243 GTCAACCCACGAAATGAGCATGCGGGCGCTCAGCAGGCCGAAGAAGCAGAATACGCAAGCCGGGG
*
28187507 ATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTCCTGCTAGTCCTGTTGTTGGTCC
308 ATCGACCCGATCCCCCTGCGTGCTGTCGA--CT-CTGCTAG-CC--TTGTTGGTCC
* ** * **
28187563 TACTGCTACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTATATGCTTAGACATG
1 TGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACATG
* * * ** *
28187628 GAATAAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCCTGCGGGCGCTCAGTCGGTTGGAGA
65 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGGCTGGAGA
** * * *
28187693 GGTAGAATGCGTAAGTCGGGGACTGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGTTGCCACAA
130 GGTAGAATGCACAAGCCGGGGACTGGCCCGGTCCCCTCTGCGTGCTATCGATCCTGTTGCCACAA
*
28187758 CCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATG
195 CCCTCAGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
*
28187823 AGCATGCGGGCGCTCAGCAGGCC-AGAGAAGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCT
259 AGCATGCGGGCGCTCAGCAGGCCGA-AGAAGCAGAATACGCAAGCCGGGGATCGA-CCCGAT-C-
28187886 CCCCTGCGTGCTGTCGA-T-T-CT-G-C-TGTTGGTCC
320 CCCCTGCGTGCTGTCGACTCTGCTAGCCTTGTTGGTCC
* *
28187918 TGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAAACTGGGAATGAACTCTGTATGCTTAGACATG
1 TGCTGCCGCAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACATG
* *
28187983 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCTGGCGA
65 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGGCTGGAGA
* * * ** * *
28188048 GGTAGAATGCACAAGCCGGGGACTGGCCCGGT-CCCTCTACGTACTATCGATCTTGCAGTCGCAA
130 GGTAGAATGCACAAGCCGGGGACTGGCCCGGTCCCCTCTGCGTGCTATCGATCCTGTTGCCACAA
* * * *
28188112 CCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACTCACGAAACG
195 CCCTCAGTCCGG-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
28188177 AGCATG
259 AGCATG
28188183 TGGGAGCTGA
Statistics
Matches: 529, Mismatches: 81, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
354 88 0.17
355 152 0.29
358 1 0.00
360 1 0.00
361 2 0.00
362 1 0.00
364 4 0.01
365 107 0.20
366 3 0.01
367 19 0.04
368 1 0.00
370 2 0.00
371 2 0.00
372 1 0.00
373 2 0.00
374 4 0.01
375 1 0.00
377 5 0.01
378 130 0.25
379 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (357 bp):
TGCTGCCGCAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGG
AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGGCTGGAGAG
GTAGAATGCACAAGCCGGGGACTGGCCCGGTCCCCTCTGCGTGCTATCGATCCTGTTGCCACAAC
CCTCAGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
CATGCGGGCGCTCAGCAGGCCGAAGAAGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCTG
CGTGCTGTCGACTCTGCTAGCCTTGTTGGTCC
Found at i:28188476 original size:26 final size:26
Alignment explanation
Indices: 28188447--28188499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28188437 CCGATCTGAT
*
28188447 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
28188473 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
28188499 C
1 C
28188500 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:28189201 original size:26 final size:26
Alignment explanation
Indices: 28189150--28189202 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28189140 CTGAACCGAT
**
28189150 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGATTGGGAATGAACTTCATATG
*
28189176 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGATTGGGAATGAACTTCATATG
28189202 C
1 C
28189203 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.36
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCATATG
Found at i:28189558 original size:26 final size:26
Alignment explanation
Indices: 28189529--28189581 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28189519 CCGGTCTGAT
28189529 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACGT-GGAATGAACTCTGTATG
28189555 CTTAGACGTGGAATGAACTCTGTATG
1 CTTAGACGTGGAATGAACTCTGTATG
28189581 C
1 C
28189582 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCTGTATG
Found at i:28190056 original size:158 final size:157
Alignment explanation
Indices: 28189555--28190056 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 157
28189545 ACTCTGTATG
* ** *
28189555 CTTAGAC-GTGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
* * * ** *
28189619 TCGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCAATCCCCCCTACGTGCTGTCGATCT
65 CCGGCCGGAGAGGCAAAATGCGCAAGC-GGGGATCGACCCGATCCCCCTTGTGTGCTGTCGATCC
* *
28189684 TGCTGCCGCAACCCTCGGTCCGGTCTGATC
129 TGCTGCCACAACCCTCGGTCCGGTC-GAAC
* ** * *
28189714 C-TAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCGTACGGGCGCATC-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGC-TCAA
* * * * * *
28189777 CCGGCCGAAGGGGCATAATGCGCAAGTCGGGGATCGACTCGATCCCCCTCTGCT-TGCTGCCGGT
65 CCGGCCGGAGAGGCAAAATGCGCAAG-CGGGGATCGACCCGATCCCCCT-TG-TGTGCTGTCGAT
* * * * ***
28189841 CCCGTTGCCACGACCCTCGGTCCGGTTGGGG
127 CCTGCTGCCACAACCCTCGGTCCGGTCGAAC
* * *
28189872 TTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
* * * * * * * *
28189936 CCGGTCGGAGAGGCAGAATGTGCAAGCAGAGGATTGGCCCGGTCCCCCTTGTGTGCTGTCAATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGC-GGGGATCGACCCGATCCCCCTTGTGTGCTGTCGATCC
* * *
28190001 TACTGCCACAACCCTTGGTCCGGTCCAAC
129 TGCTGCCACAACCCTCGGTCCGGTCGAAC
28190030 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
28190057 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 61, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 146 0.54
159 122 0.45
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAAAATGCGCAAGCGGGGATCGACCCGATCCCCCTTGTGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGTCGAAC
Found at i:28190059 original size:26 final size:26
Alignment explanation
Indices: 28190030--28190082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28190020 CCGGTCCAAC
28190030 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28190056 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28190082 C
1 C
28190083 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28195231 original size:171 final size:171
Alignment explanation
Indices: 28194882--28195251 Score: 399
Period size: 171 Copynumber: 2.2 Consensus size: 171
28194872 AACTTTGTAT
* * * * * *
28194882 GCTTAAACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * * *
28194947 CTAGTCGGAAAGGCATAATGCATAAGCCAGGGATCAACCTGGTCCCCTTCTACATCCTGTCGATC
66 CCAGTCGGAAAGGCAGAATACACAAGCCAGGGATCAACCTGATCCCCCTCTACATCCTGTCGATC
* * *
28195012 CCGTTACCGGTCTTGCTGCTACAACCCTCGATCCGACTGGG
131 CCGTTACCGGTCATGCTGCTACAACCCTCGATCCGACTCGA
* *
28195053 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACTGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * *
28195117 ACCAGTCGGAGAGGCAGAATACGCAAGTCAGGGATC-AGCTCGATCCCCCT-TACGTGCTGTCGA
65 ACCAGTCGGAAAGGCAGAATACACAAGCCAGGGATCAACCT-GATCCCCCTCTACATCCTGTCGA
* * * * *
28195180 TCCTGCTTGCTGGTCATGCTG-TCGCAACCCTCGGTCCGA-TCCGA
129 TCCCG-TTACCGGTCATGCTGCT-ACAACCCTCGATCCGACT-CGA
*
28195224 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
28195252 TTTGACATGG
Statistics
Matches: 163, Mismatches: 30, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
170 21 0.13
171 141 0.87
172 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCAGTCGGAAAGGCAGAATACACAAGCCAGGGATCAACCTGATCCCCCTCTACATCCTGTCGATC
CCGTTACCGGTCATGCTGCTACAACCCTCGATCCGACTCGA
Found at i:28196675 original size:26 final size:26
Alignment explanation
Indices: 28196639--28196691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28196629 CCGGTCCAAT
28196639 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28196665 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28196691 C
1 C
28196692 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28196994 original size:157 final size:160
Alignment explanation
Indices: 28196738--28197074 Score: 477
Period size: 157 Copynumber: 2.1 Consensus size: 160
28196728 AGCCAGTCGA
* * ** *
28196738 AGAGGCATAATGCACAAGCCGGGGATCAGCTCAATCCCCCTCTACGTGCTGCCAGTCCCGCTGCC
1 AGAGGCAGAATGCGCAAGCCGGCAATCAGCTCAATCCCCCTCTACGTGCTGCCAGTCCCGCTACC
*
28196803 ACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
66 ACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * *
28196868 AACGGGTGCAC-GGGCGCTCAGCTGGCCGG
131 AACGGGCGCACAGGGCGCTCAACTGGCCAG
* * *
28196897 AGAGGCAGAATGCGCAAGCCGGCAATCAGCTCGAT-CCCC-CTACGTTCTGTC-GATCCCGCTAC
1 AGAGGCAGAATGCGCAAGCCGGCAATCAGCTCAATCCCCCTCTACGTGCTGCCAG-TCCCGCTAC
*
28196959 CACAACCCTCGGT-TCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
65 CACAACCCTCGGTCT-GACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
28197023 GAAATGGGCGTACAGGGCGCTCAATTGGCCAG
129 GAAACGGGCGCACAGGGCGCTCAACTGGCCAG
28197055 AGAGGCAGAATGCGCAAGCC
1 AGAGGCAGAATGCGCAAGCC
28197075 AGGGATTGGC
Statistics
Matches: 159, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
156 2 0.01
157 88 0.55
158 39 0.25
159 30 0.19
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (160 bp):
AGAGGCAGAATGCGCAAGCCGGCAATCAGCTCAATCCCCCTCTACGTGCTGCCAGTCCCGCTACC
ACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGGGCGCACAGGGCGCTCAACTGGCCAG
Found at i:28197167 original size:159 final size:157
Alignment explanation
Indices: 28196738--28197167 Score: 411
Period size: 159 Copynumber: 2.7 Consensus size: 157
28196728 AGCCAGTCGA
* * ** * * * * * *
28196738 AGAGGCATAATGCACAAGCCGGGGATCAGCTCAATCCCCCTCTACGTGCT-GCCAGTCCCGCTGC
1 AGAGGCAGAATGCGCAAGCCGGCAATCAGCCCGAT-CCCC-CTACGTGCTATCGA-TCCCACTAC
* * *
28196802 CACAACCCTCGGTCTGACTAGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
63 CACAACCCTCGATCCGACT-GGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
28196866 GAAACGGGTGCACGGGCGCTCAGCTGGCCGG
127 GAAACGGGCGCACGGGCGCTCAACTGGCCAG
* * * *
28196897 AGAGGCAGAATGCGCAAGCCGGCAATCAGCTCGATCCCCCTACGTTCTGTCGATCCCGCTACCAC
1 AGAGGCAGAATGCGCAAGCCGGCAATCAGCCCGATCCCCCTACGTGCTATCGATCCCACTACCAC
* * *
28196962 AACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
66 AACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * *
28197027 TGGGCGTACAGGGCGCTCAATTGGCCAG
131 CGGGCGCAC-GGGCGCTCAACTGGCCAG
* ** * ***
28197055 AGAGGCAGAATGCGCAAGCCAGG-GATTGGCCCGATCCTCCCTACGTGCTATCGATCCTACTGTT
1 AGAGGCAGAATGCGCAAGCC-GGCAATCAGCCCGATCC-CCCTACGTGCTATCGATCCCACTACC
* * * *
28197119 GCAACCCTCGATCCGATCT-GATCTTAGTC-TGGGAATGAACTCCGTATGC
64 ACAACCCTCGATCCGA-CTGGAGCTTAGACAT-GGAATGAACTCCCTATGC
28197168 TTAGATTGGG
Statistics
Matches: 228, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
156 2 0.01
157 84 0.37
158 52 0.23
159 88 0.39
160 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (157 bp):
AGAGGCAGAATGCGCAAGCCGGCAATCAGCCCGATCCCCCTACGTGCTATCGATCCCACTACCAC
AACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGCACGGGCGCTCAACTGGCCAG
Found at i:28198057 original size:26 final size:26
Alignment explanation
Indices: 28198021--28198073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28198011 CCGGTCAGAT
*
28198021 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
28198047 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
28198073 C
1 C
28198074 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:28205740 original size:159 final size:158
Alignment explanation
Indices: 28205358--28205792 Score: 400
Period size: 159 Copynumber: 2.7 Consensus size: 158
28205348 CTCTGTATGC
* * *
28205358 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * ** **
28205423 GGCCGGAAAGGTAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTG
66 AGCCGGAGAGGGAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCCA
**
28205488 CTGCCACAACCCTCAGTCCGGTCTTATC
131 CTGCCACAACCCTCAGTCCGGTCTTAAA
* * * * * * *
28205516 TTA-A-ATGGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTCCGAGCGCTGAG
1 TTAGACAT--GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
28205579 CCAGCCAGAGAGGGATAAT-TCGCAAGCCGAGGATC-AGCCCGATCCCCCTCTGCGTGCTACCGG
64 CCAGCCGGAGAGGGAGAATGT-GCAAGCCGAGGATCGA-CCCGATCCCCC-CTGCGTGCTACCGA
**
28205642 TCCCACTGCCACAACTTTCAGAT-CGG-C-TAGGAA
126 TCCCACTGCCACAACCCTCAG-TCCGGTCTTA--AA
* * * *
28205675 TTAGACCTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * ** * * * *
28205740 AGTCGGAGAGGCAGAATGCACAAGAC-AGGGATCGGCCCGGTCCCCCCTACGTG
66 AGCCGGAGAGGGAGAATGTGCAAGCCGA-GGATCGACCCGATCCCCCCTGCGTG
28205793 TTGTCAATCC
Statistics
Matches: 218, Mismatches: 46, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
156 2 0.01
157 5 0.02
158 94 0.43
159 114 0.52
160 2 0.01
161 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
AGCCGGAGAGGGAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCCA
CTGCCACAACCCTCAGTCCGGTCTTAAA
Found at i:28206139 original size:159 final size:158
Alignment explanation
Indices: 28205869--28206179 Score: 401
Period size: 159 Copynumber: 2.0 Consensus size: 158
28205859 AACTCTGTAT
* ** * *
28205869 GCTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * *** * * *
28205934 CCGGCCGGAGAGGCATAATACGTAAGCCGAGGATTGGCCCGGTCCCCCTCTGTGTGCTACCGATC
66 CCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCACCCCGATCCCCC-CTGCGTGCTACCAATC
28205999 CCGCTGCCACAACCCTCGGTCCGGCTGGG
130 CCGCTGCCACAACCCTCGGTCCGGCTGGG
* *
28206028 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * *
28206092 GCCGACCGGAGAGGCAGAATGCGTAAGTCG-GAGATCACCCCGATCCCCCCTGCGTGCTGCCAAT
65 GCCGACCGGAGAGGCAGAATACGTAAGCCGAG-GATCACCCCGATCCCCCCTGCGTGCTACCAAT
* *
28206156 CCTGCTGCTACAACCCTCGGTCCG
129 CCCGCTGCCACAACCCTCGGTCCG
28206180 ATCCGACCTT
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
158 35 0.27
159 93 0.72
160 2 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCACCCCGATCCCCCCTGCGTGCTACCAATCC
CGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:28206147 original size:513 final size:512
Alignment explanation
Indices: 28205162--28206149 Score: 1279
Period size: 513 Copynumber: 1.9 Consensus size: 512
28205152 GGGCTGAAGC
** * * *
28205162 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAAGCCATGAAACGAGCATGTGGGTGCTCAACC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAACC
* * * * * *
28205227 GGTCGGAGAGGCAGAATGCACAACCCAGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTG
66 AGTCGGAGAGGCAGAATGCACAACACAGGGATCGGCCCGATCCCCCCTACGTGCTGTCAATCCTA
* * *
28205292 CTGCTGATCTTGTTGCCACAACCCTTGGTCCAGTCCAATCTTAGATTGGGAATGAACTCTGTATG
131 CTGCTGATCTTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATG
* * *
28205357 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGTGCTCAGT
196 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** *
28205422 CGGCCGGAAAGGTAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
261 CGGCCGGAAAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCC
* * *
28205487 GCTGCCACAACCCTCAGTCCGGTCTTATCTTAAATGGGGAATGAACTCCGTATACCTAAGTCAAC
326 GCTGCCACAACCCTCAGTCCGGTCTGAGCTTAAAT-GGGAATGAACTCCGTATACCTAAGCCAAC
* * * * * * * *
28205552 CCACGAAATGAGCGTCCGAGCGCTGAGCCAGCCAGAGAGGGATAATTCGCAAGCCGAGGATCAGC
390 CCACAAAACGAGCGTCCGAGCACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCACC
28205617 CCGATCCCCCTCTGCGTGCTACCGGTCCCACTGCCACAACTTTCAGATCGGCTAGGAA
455 CCGATCCCCCTCTGCGTGCTACCGGTCCCACTGCCACAACTTTCAGATCGGCTAGGAA
* * *
28205675 TTAGACCTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAACC
* * *
28205740 AGTCGGAGAGGCAGAATGCACAAGACAGGGATCGGCCCGGTCCCCCCTACGTGTTGTCAATCCTA
66 AGTCGGAGAGGCAGAATGCACAACACAGGGATCGGCCCGATCCCCCCTACGTGCTGTCAATCCTA
*
28205805 CTGCT-AGTCTTGCTGCCACAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCTGTA
131 CTGCTGA-TCTTGCTGCCACAACCCTCGGTCCAG-TCCAATCTTAGACTGGGAATGAACTCTGTA
* * *
28205868 TGCTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
194 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
28205933 GCCGGCCGGAGAGGCATAATACGTAAGCCGAGGATTGGCCCGGTCCCCCTCTGTGTGCTACCGAT
259 GCCGGCCGGAAAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTACCGAT
* * * *
28205998 CCCGCTGCCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCTTATGCCTAAG
323 CCCGCTGCCACAACCCTCAGTCCGGTCT-GAGCTTA-A-ATGGGAATGAACTCCGTATACCTAAG
* * * * * * *
28206061 CCAACCCACAAAACGGGTGTGCGGGCACTCAGCC-GACCGGAGAGGCAGAATGCGTAAGTCG-GA
385 CCAACCCACAAAACGAGCGTCCGAGCACTCAGCCAG-CCAGAGAGGCAGAATGCGCAAGCCGAG-
28206124 GATCACCCCGATCCCCC-CTGCGTGCT
448 GATCACCCCGATCCCCCTCTGCGTGCT
28206150 GCCAATCCTG
Statistics
Matches: 404, Mismatches: 63, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
512 2 0.00
513 279 0.69
514 120 0.30
515 1 0.00
516 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (512 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAACC
AGTCGGAGAGGCAGAATGCACAACACAGGGATCGGCCCGATCCCCCCTACGTGCTGTCAATCCTA
CTGCTGATCTTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATG
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAAAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCC
GCTGCCACAACCCTCAGTCCGGTCTGAGCTTAAATGGGAATGAACTCCGTATACCTAAGCCAACC
CACAAAACGAGCGTCCGAGCACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCACCC
CGATCCCCCTCTGCGTGCTACCGGTCCCACTGCCACAACTTTCAGATCGGCTAGGAA
Found at i:28206762 original size:159 final size:159
Alignment explanation
Indices: 28206453--28206957 Score: 390
Period size: 159 Copynumber: 3.2 Consensus size: 159
28206443 GTGGCTTAAA
* *
28206453 ATCTTAGACTAGGAATGAACTTAGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
1 ATCTTAGACTAGGAATGAACTCAGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCA
* * * * * *
28206518 ACCGATCGAAGAGGTAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCCTTGCGTGCTGTCGAT
66 ACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCCTGCGTGCTATCGAG
* * *
28206583 CCCGCTGTCATAACCCTCGGTCCGATCCG
131 CCCACTGCCACAACCCTCGGTCCGATCCG
* * * ** * * *
28206612 ATCTTAGACTGGGAATGAACTCCGTTTGTGTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGA
1 ATCTTAGACTAGGAATGAACTCAGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCA
* * * * **** *
28206677 GCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGGTCGATCCCCCCCTGCGTGCTATCGGG
66 ACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCCTGCGTGCTATCGAG
* * *
28206742 CCCACTGCCACAACCGTCGGTCCG-GCTAG
131 CCCACTGCCACAACCCTCGGTCCGATC-CG
** * * ** * * * **
28206771 GGCTGAGAC-ATGGAATGAAGTCCCTATGCCTAAGCTAACCCACGAAACGAGTGTACGGGTGCTC
1 ATCTTAGACTA-GGAATGAACTCAGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTC
* * * ** ** * *
28206835 AGCCGGCC-AGAGAGGTAGAATGCGCAAGCCATGGATCGGCCCGAT-CCCCCCTACGTGCTACCG
65 AACCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCCTGCGTGCTATCG
* * * * * * * *
28206898 ATCCTAGTGTCACAACCCTCGATTCGAGCTG
129 AGCCCACTGCCACAACCCTCGGTCCGATCCG
* *
28206929 ATCTTATACTGGGAATGAACT-ACGTATGC
1 ATCTTAGACTAGGAATGAACTCA-GTATGC
28206958 TTAGCTGGGG
Statistics
Matches: 266, Mismatches: 74, Indels: 13
0.75 0.21 0.04
Matches are distributed among these distances:
158 56 0.21
159 210 0.79
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTAGGAATGAACTCAGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCA
ACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCCTGCGTGCTATCGAG
CCCACTGCCACAACCCTCGGTCCGATCCG
Found at i:28207784 original size:159 final size:158
Alignment explanation
Indices: 28207337--28207788 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
28207327 CTCCATATGC
* * *
28207337 TTAGACATGGAATGAATTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-C
* * * *
28207402 GGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCTC-CTACGTGCTGTCGATCCT
65 GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCT
* ** ** * * *
28207466 GCTACCGTAACCCTCATTCCGGTCCGATC
130 GCTGCCACAACCCTCAGACCGCTACGATA
*** * * * *
28207495 TTAGATGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCG
* * * * * *
28207560 AGTTGGAGAGGCATAATGCGCAAACCGGGGATCGACCCGGTCCCCCTCTGCGTGCT-ACTGGTCC
66 A-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTC-GATCC
*
28207624 TGCTGCCACAACCCTCAGACCAGCTAGGA-A
129 TGCTGCCACAACCCTCAGACC-GCTACGATA
* * * * * *
28207654 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAACTG-GCATGCCGGTGCTCAGT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTCAG-
* ** *
28207718 CGATCGGAGAGGCAGAATGCACAAGCTTGAGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCC
64 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCC
28207783 TGCTGC
129 TGCTGC
28207789 TGGTCCTGCT
Statistics
Matches: 235, Mismatches: 52, Indels: 13
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 93 0.40
159 132 0.56
160 9 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCG
ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCTG
CTGCCACAACCCTCAGACCGCTACGATA
Found at i:28208286 original size:514 final size:511
Alignment explanation
Indices: 28207120--28208304 Score: 1417
Period size: 515 Copynumber: 2.3 Consensus size: 511
28207110 TTGCTACCAT
* * * * * * *
28207120 AACCCTCGATCGGGCTGGGTCTTAGACGTGGAATGAACTCCGTATCCCTAAGCCAACCCATAAAA
1 AACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* ** * * * * *
28207185 CGAGCGTGTGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGTAACCCGGTGATCATCCCGGTCCC
66 CGGGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGCATAAGCAGG-GATCA-CCCGGTCCC
* * * * *
28207250 CCCTACGTACTGTCGATCCTGCTACTGGTCCTGTTGCCACAACCCTTGGTTCGGTCCGATCTTAG
129 CCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTTGATTCAGTCCGATCTTAG
* * * * *
28207315 ATTGGGAATGAACTCCATATGCTTAGACATGGAATGAATTCTGTATGCCTAAGCCAACCCACGAA
194 ACTGGGAATGAACTCCATATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
* * * ** * * * *
28207380 ATGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCC
259 ATGAGCATGCGGGCGCTCAACAAGCCGGAGAGGCAAAATGCGTAAGCCGAGGATCAACCCGATCC
* * * * *
28207445 CTCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCATTCCGGTCCGATCTTAGATGGGGAATGA
324 CTCCTACATCCTGTCGATCCTGCTACCGCAACCCTCATTCCAGTCCGATCTTAGATGAGGAATGA
* * * **
28207510 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGTTGGAGAGGCATA
389 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTGAGCCAGCCGGAGAGGCATA
** * * **
28207575 ATGCGCAAACCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACTGGTCCTGCTGCCAC
454 ATGCGCAAACCGAAGATCGACCCGGTCCCCCTCTACGTGCTACTAGTCCCACTGCCAC
* * * * * *
28207633 AACCCTCAGACCAGCTAGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAA
1 AACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * * * * * *
28207698 CTGGCATGCCGGTGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCTTGAGATCGACCCGGTCCC
66 CGGGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGCATAAGC-AGGGATC-ACCCGGTCCC
*
28207763 CCTCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTTGA-TCTAGTCTGATCTT
129 CC-CTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTTGATTC-AGTCCGATCTT
*
28207827 AGACTGGGAATGAACTCTATATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACA
192 AGACTGGGAATGAACTCCATATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACA
28207892 AAATGAGCATGCGGGCGCTCAACAAGCCGGAGAGGCAAAATGCGTAAGCCGAGGATCAACCCGAT
257 AAATGAGCATGCGGGCGCTCAACAAGCCGGAGAGGCAAAATGCGTAAGCCGAGGATCAACCCGAT
* * * * ** *
28207957 CCCCTCTTGCATCCTGTTGATCTTGCTGTCGCAACCCTCGA-TCCAGTCTGATCTTAGACT-AGG
322 -CCCTCCTACATCCTGTCGATCCTGCTACCGCAACCCTC-ATTCCAGTCCGATCTTAGA-TGAGG
* *
28208020 AATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGACGCTGAGCC-GACCGGAGA
384 AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTGAGCCAG-CCGGAGA
* * * * * *
28208084 GGCATAATGCGCGAGCTGAAGATCGGCCTGGTCCCCCTCTACGTGCT-GTCAGTCCCACTGCCAC
448 GGCATAATGCGCAAACCGAAGATCGACCCGGTCCCCCTCTACGTGCTACT-AGTCCCACTGCCAC
* * * *
28208148 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAA
1 AACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
** * *
28208213 CGGGCGTGCAGGAACTCAGCCAACCGGAGAGGCAGAATGCATAAGTCAGGGATCACCCAGATCCC
66 CGGGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGCATAAG-CAGGGATCACCC-GGTCCC
28208278 CCCTACGTGCTGTCGATCCTGCTGCTG
129 CCCTACGTGCTGTCGATCCTGCTGCTG
28208305 CAACCCTCGA
Statistics
Matches: 560, Mismatches: 101, Indels: 21
0.82 0.15 0.03
Matches are distributed among these distances:
513 103 0.18
514 200 0.36
515 254 0.45
516 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (511 bp):
AACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CGGGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGCATAAGCAGGGATCACCCGGTCCCCC
CTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTTGATTCAGTCCGATCTTAGAC
TGGGAATGAACTCCATATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAT
GAGCATGCGGGCGCTCAACAAGCCGGAGAGGCAAAATGCGTAAGCCGAGGATCAACCCGATCCCT
CCTACATCCTGTCGATCCTGCTACCGCAACCCTCATTCCAGTCCGATCTTAGATGAGGAATGAAC
TCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTGAGCCAGCCGGAGAGGCATAAT
GCGCAAACCGAAGATCGACCCGGTCCCCCTCTACGTGCTACTAGTCCCACTGCCAC
Found at i:28208362 original size:26 final size:26
Alignment explanation
Indices: 28208326--28208378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28208316 CCGGTCTGAC
* *
28208326 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
28208352 CTTAGAATGGGGATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
28208378 C
1 C
28208379 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:28209541 original size:26 final size:26
Alignment explanation
Indices: 28209505--28209557 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28209495 TCGGTCCGAT
*
28209505 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28209531 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28209557 C
1 C
28209558 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28210603 original size:26 final size:26
Alignment explanation
Indices: 28210574--28210626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28210564 CCGGTTTAAT
28210574 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28210600 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28210626 C
1 C
28210627 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28210812 original size:26 final size:26
Alignment explanation
Indices: 28210783--28210835 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28210773 CCGGTCCGAT
28210783 CTTAGAC-TAGGAATTAACTCCGTATG
1 CTTAGACAT-GGAATTAACTCCGTATG
*
28210809 CTTAGACATGGAATTAACTCCTTATG
1 CTTAGACATGGAATTAACTCCGTATG
28210835 C
1 C
28210836 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATTAACTCCGTATG
Found at i:28211826 original size:26 final size:26
Alignment explanation
Indices: 28211797--28211852 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
28211787 CCGGTTCGAT
28211797 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28211823 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28211849 CTTA
1 CTTA
28211853 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28212325 original size:158 final size:158
Alignment explanation
Indices: 28211903--28212325 Score: 456
Period size: 159 Copynumber: 2.7 Consensus size: 158
28211893 GGAGAGGCAG
*
28211903 AATGCGCAAGCCAGGGATCGACCCGGTCCCCACCTGCATGCTGTCGATCCTGCTGCCACAACCCT
1 AATGCGCAAGCCAGGGATCGACCCGGTCCCC-CCTGCATGCTGTCGATCCTGCTACCACAACCCT
* * * * *
28211968 CGGTCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTACGTCAACCCACAAAACAAGCA
65 CGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACACACAAAACAAGCA
* * * *
28212033 TTCGGGCACTGAGCCATCGGAGAGGTATA
130 TGCGGGCACTCAGCCATCGAAAAGGTATA
** * * * * ** * *
28212062 AATGCATAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTACCGGTCCCGCTACCACAACCCT
1 AATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCATGCTGTCGATCCTGCTACCACAACCCT
* ** ** * * *
28212127 CGGTCTGG-CTGGAGCTTAGAC-ATTTAATGAACTCCCTATGCCTAAGCCAACACACGAAATAGG
65 CGGTCTGGTCT-GATCTTAGACTA-GGAATGAACTCTGTATGCCTAAGCCAACACACAAAACAAG
** **
28212190 TGTGCGGGTGCTCAGCCAATCGAAAAGGTA-A
128 CATGCGGGCACTCAGCC-ATCGAAAAGGTATA
* * * *
28212221 AATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTC
1 AATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTC
28212286 GGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
66 GGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
28212326 TTAGACTAGG
Statistics
Matches: 207, Mismatches: 51, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
158 58 0.28
159 139 0.67
160 10 0.05
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (158 bp):
AATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTC
GGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACACACAAAACAAGCAT
GCGGGCACTCAGCCATCGAAAAGGTATA
Found at i:28212328 original size:26 final size:26
Alignment explanation
Indices: 28212299--28212351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28212289 CTGGTCTGAT
*
28212299 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
28212325 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28212351 C
1 C
28212352 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28212467 original size:343 final size:342
Alignment explanation
Indices: 28211982--28212747 Score: 941
Period size: 343 Copynumber: 2.2 Consensus size: 342
28211972 CTGGTCTAAT
* * * * * * * *
28211982 CTTAGACTGGGAATGAACTCTGTATGCCTACGTCAACCCACAAAACAAGCATTCGGGCACTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
28212047 C-A-TCGGAGAGGTATAAATGCATAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTACCGGT
65 CGACT-GGAGAGGCA-GAATGCACAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTACCAGT
* * **
28212110 CCCGCTACCACAACCCTC-GGTCTGGCT-GGAGCTTAGACATTTAATGAACTCCCTATGCCTAAG
128 CCCGCTACCACAACCCTCAGTTC-GGCTAGG-GCTTAAACATGGAATGAACTCCCTATGCCTAAG
* * * *
28212173 CCAACACACGAAATAGGTGTGCGGGTGCTCAGCCAATCGAAAAGGTAAAATGCGCAAGCCAAGGA
191 CCAACACACGAAACAGGCGTGCGGGTGCTCAGCCAACCGAAAAGGCAAAATGCGCAAGCCAAGGA
* *
28212238 TCGGCCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGGTCTGG-TCTGATCTT
256 TAGGCCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCTGGTTC-GATCTT
*
28212302 AGACTAGGAATGAACTCTGTATG
320 AGACTAGGAATGAACTCCGTATG
* *
28212325 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
28212390 CGGCTGGAGAGGCAGAATGCACAAGCCGGGGA-CTGACCCGGTCCCCCTCTATGTGCTGCCAGTC
65 CGACTGGAGAGGCAGAATGCACAAGCCGGGGATC-GACCCGGCCCCCCTCTACGTGCTACCAGTC
*
28212454 CCGCTGCCACAACCCTCAGTTCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCGCTACCACAACCCTCAGTTCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * **
28212519 ACCCACGAAACGGGCGTGCGGGTGCTCAGCCAACCGGAGAGGCAGAATGTGTAAGCCGGGGATAG
194 ACACACGAAACAGGCGTGCGGGTGCTCAGCCAACCGAAAAGGCAAAATGCGCAAGCCAAGGATAG
* ** * * *
28212584 GCCCGGTTCCCCCTGTGTGTTGTCGATCCTACTGCTGCAACCCTCGATCTGGTTCGATCTTAGAC
259 GCCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCTGGTTCGATCTTAGAC
*
28212649 TGGGAATGAACTCCGTATG
324 TAGGAATGAACTCCGTATG
* * * * *
28212668 CTTAGACTGGGGATGAATTCCGTATGCCTATGTCAACCCATGAAACGAGCGTGCAGACGCTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
28212733 CGACTAGAGAGGCAG
65 CGACTGGAGAGGCAG
28212748 GATGTGCAAG
Statistics
Matches: 360, Mismatches: 56, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
342 1 0.00
343 340 0.94
344 18 0.05
345 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTACCAGTCCC
GCTACCACAACCCTCAGTTCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAAC
ACACGAAACAGGCGTGCGGGTGCTCAGCCAACCGAAAAGGCAAAATGCGCAAGCCAAGGATAGGC
CCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCTGGTTCGATCTTAGACTA
GGAATGAACTCCGTATG
Found at i:28212576 original size:502 final size:507
Alignment explanation
Indices: 28211468--28212581 Score: 1241
Period size: 502 Copynumber: 2.2 Consensus size: 507
28211458 AATTTCGTAT
*
28211468 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
* * * * * *
28211533 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCTCTCTGCGTGCTGCAGGTC
66 CC-ATCGGAGAGGCAGAATGTGTAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTACAGGTC
* * * * * **
28211598 CCGTTGCCACAACCCTTGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTGAATGCCTAAGCCA
130 CCGCTACCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCA
* * *** * * * * **
28211663 ACCCATGAAACAGGCGTGCAGGAGCTCAGCTGGCCGTAGAGGCAGAATGCGTAAGCCGGGGATAG
195 ACACACGAAACAGGCGTGCAGGAGCTCAGCCAACCGAAAAGGCAAAATGCGCAAGCCAAGGATAG
* * *
28211728 GCCCGGTCTCCCCTGCGTGCTGCTAATCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTT
260 GCCCGGTCTCCCC-GCGTGCTG---A-CTGCTGCTGATCCTACTACCGCAACCCTCGGTCCGGTT
* *
28211793 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCA
320 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* *** *
28211858 ACCCACGGAATGAGCCTACGGGCGCTCAGTGGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
385 ACCCACGAAATGAGCCTACGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCG
* * *
28211923 ACCCGGTCCCCACCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTAA
450 ACCCGGTCCCCACCTACATGCTGCCGATCCCGCTGCCACAACCCTCGGTCTGGTCTAA
* * * * * * * ** *
28211981 TCTTAGAC-TGGGAATGAACTCTGTATGCCTACGTCAACCCACAAAACAAGCATTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCA
* * ** *
28212045 GCCATCGGAGAGGTATAAATGCATAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTACCGGT
65 GCCATCGGAGAGGCA-GAATGTGTAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTACAGGT
* ** *
28212110 CCCGCTACCACAACCCTCGGTCTGGCTGGAGCTTAGACATTTAATGAACTCCCTATGCCTAAGCC
129 CCCGCTACCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCAATGCCTAAGCC
* * * * * * *
28212175 AACACACGAAATAGGTGTGCGGGTGCTCAGCCAATCGAAAAGGTAAAATGCGCAAGCCAAGGATC
194 AACACACGAAACAGGCGTGCAGGAGCTCAGCCAACCGAAAAGGCAAAATGCGCAAGCCAAGGATA
*
28212240 GGCCCGGTC-CCCC-C-TGC--A-TGCTG-TCGATCCTACTACCGCAACCCTCGGTCTGG-TCTG
259 GGCCCGGTCTCCCCGCGTGCTGACTGCTGCT-GATCCTACTACCGCAACCCTCGGTCCGGTTC-G
* * *
28212297 ATCTTAGACTAGGAATGAACTCTGTATGCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAA
322 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * *
28212361 CCCACGAAATGAGCGTGCGGGCGCTCAACCGGCTGGAGAGGCAGAATGCACAAGCCGGGGA-CTG
386 CCCACGAAATGAGCCTACGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATC-G
** * *
28212425 ACCCGGTCCCC-CTCTATGTGCTGCC-AGTCCCGCTGCCACAACCCTCAGT-TCGG-CTAGG
450 ACCCGGTCCCCAC-CTACATGCTGCCGA-TCCCGCTGCCACAACCCTCGGTCT-GGTCTA-A
* * **
28212483 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
*
28212548 CCAACCGGAGAGGCAGAATGTGTAAGCCGGGGAT
66 CC-ATCGGAGAGGCAGAATGTGTAAGCCGGGGAT
28212582 AGGCCCGGTT
Statistics
Matches: 494, Mismatches: 95, Indels: 35
0.79 0.15 0.06
Matches are distributed among these distances:
501 11 0.02
502 248 0.50
503 11 0.02
504 1 0.00
509 3 0.01
510 1 0.00
512 15 0.03
513 204 0.41
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (507 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
CCATCGGAGAGGCAGAATGTGTAAGCCGGGGATCGACCCGGCCCCCCTCTACGTGCTACAGGTCC
CGCTACCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAA
CACACGAAACAGGCGTGCAGGAGCTCAGCCAACCGAAAAGGCAAAATGCGCAAGCCAAGGATAGG
CCCGGTCTCCCCGCGTGCTGACTGCTGCTGATCCTACTACCGCAACCCTCGGTCCGGTTCGATCT
TAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAATGAGCCTACGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGG
TCCCCACCTACATGCTGCCGATCCCGCTGCCACAACCCTCGGTCTGGTCTAA
Found at i:28212678 original size:26 final size:26
Alignment explanation
Indices: 28212642--28212694 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28212632 CTGGTTCGAT
28212642 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28212668 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28212694 C
1 C
28212695 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28213478 original size:26 final size:26
Alignment explanation
Indices: 28213434--28213486 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28213424 CCAGTCTGAT
*
28213434 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
*
28213460 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
28213486 C
1 C
28213487 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:28214142 original size:26 final size:26
Alignment explanation
Indices: 28214106--28214158 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28214096 TCGATTTGAT
28214106 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28214132 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28214158 C
1 C
28214159 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28214345 original size:26 final size:26
Alignment explanation
Indices: 28214316--28214371 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
28214306 CCGGTCTAAT
28214316 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28214342 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28214368 CTTA
1 CTTA
28214372 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28214983 original size:158 final size:159
Alignment explanation
Indices: 28214616--28214987 Score: 408
Period size: 159 Copynumber: 2.4 Consensus size: 159
28214606 GATCTTGCTG
* * * *
28214616 CCATAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTTCGTATTCCTAAGCCAACCGAT
1 CCATAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCAT
* * * * * * * *
28214681 GAAACGAGCGTGCGAGCTCTGAGCCGACCGGAGAGGGAGAATGCGCAACCCGAGGATCGGCCCGG
66 GAAACGAGCATACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAACCCGAGGATCGGCCCGA
* * * *
28214746 TCCCCCTCTGCGTGCTGTCGGTCCCGCTG
131 TCCCCCTCTGCGTGCTATCGATCCCACTA
* * * * *
28214775 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTTAGCCAACCCAT
1 CCATAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCAT
* * * * * *
28214840 GAAACGGGCATACGGGCGCTCAACCGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGA
66 GAAACGAGCATACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAACCCGAGGATCGGCCCGA
* *
28214905 TCTCCC-CTGCGTGCTATCGATCCTACTA
131 TCCCCCTCTGCGTGCTATCGATCCCACTA
* * * **
28214933 TCGTAACCCTCGATCCAGTTCGATCTTAGAC-TAGGAATGAACTCCGTATG-CTTAG
1 CCATAACCCTCGATCCAGTTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTTAG
28214988 ACTGGGGATG
Statistics
Matches: 173, Mismatches: 39, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
157 6 0.03
158 55 0.32
159 112 0.65
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CCATAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCAT
GAAACGAGCATACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAACCCGAGGATCGGCCCGA
TCCCCCTCTGCGTGCTATCGATCCCACTA
Found at i:28214998 original size:26 final size:26
Alignment explanation
Indices: 28214957--28215009 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28214947 CCAGTTCGAT
*
28214957 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
* *
28214983 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
28215009 C
1 C
28215010 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:28215148 original size:24 final size:24
Alignment explanation
Indices: 28215101--28215149 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
28215091 CCTCTCTGCG
* **
28215101 TGCTGTCGATCCTGCTACTGGTCC
1 TGCTGTAGATCCTGCTACCAGTCC
*
28215125 TGCTGTAGATCCTGCTGCCAGTCC
1 TGCTGTAGATCCTGCTACCAGTCC
28215149 T
1 T
28215150 ATTGCCACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.10, C:0.33, G:0.24, T:0.33
Consensus pattern (24 bp):
TGCTGTAGATCCTGCTACCAGTCC
Found at i:28215478 original size:158 final size:158
Alignment explanation
Indices: 28215154--28215485 Score: 416
Period size: 158 Copynumber: 2.1 Consensus size: 158
28215144 AGTCCTATTG
* * *
28215154 CCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCAC
* * * *
28215219 GAAACGAGCATGCGAGCTCTGAACCGGCCGAAAAGGTAGAATGCACAAGCTGGGGATCACCCCAT
66 GAAACGAACATGCGAGCTCTCAACCGACCGAAAAGGTAGAATGCACAAGCCGGGGATCACCCCAT
*
28215284 CCCCTTCTGCGTGCTGTCGATCCCGCTA
131 CCCCTCCTGCGTGCTGTCGATCCCGCTA
* * *
28215312 CCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCAC
* * * * * * * *
28215377 GAAACGAACGTGCG-GGTGCTCAATCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGATCCG
66 GAAACGAACATGCGAGCT-CTCAACCGACCGAAAAGGTAGAATGCACAAGCCGGGGATC-ACCCC
* * *
28215441 GTCCCC-CCTGCGTGCTGTCGATCCTGCTG
129 ATCCCCTCCTGCGTGCTGTCGATCCCGCTA
**
28215470 CCGTAACCCTCGGTCT
1 CCACAACCCTCGGTCT
28215486 GATCCAACCT
Statistics
Matches: 147, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
157 2 0.01
158 137 0.93
159 8 0.05
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (158 bp):
CCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCAC
GAAACGAACATGCGAGCTCTCAACCGACCGAAAAGGTAGAATGCACAAGCCGGGGATCACCCCAT
CCCCTCCTGCGTGCTGTCGATCCCGCTA
Found at i:28215498 original size:158 final size:158
Alignment explanation
Indices: 28215178--28215520 Score: 370
Period size: 158 Copynumber: 2.2 Consensus size: 158
28215168 CTGGTTGGGG
* * * *
28215178 CTTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCCACGAAACGAGCATGCGAGCTCTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGAGCTCTCAAC
* * *
28215243 CGGCCGAAAAGGTAGAATGCACAAGCTGGGGATCACCCCATCCCCTTCTGCGTGCTGTCGATCCC
66 CGACCGAAAAGGTAGAATGCACAAGCCGGGGATCACCCCATCCCCTCCTGCGTGCTGTCGATCCC
****
28215308 GCTACCACAACCCTCAGTCTAGCTGGGG
131 GCTACCACAACCCTCAGTCTAGCTCAAC
* * *
28215336 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCG-GGTGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGAGCT-CTCAA
* * * * * **
28215400 TCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGATCCGGTCCCC-CCTGCGTGCTGTCGATC
65 CCGACCGAAAAGGTAGAATGCACAAGCCGGGGATC-ACCCCATCCCCTCCTGCGTGCTGTCGATC
* * ** * *
28215464 CTGCTGCCGTAACCCTCGGTCT-GATCCAAC
129 CCGCTACCACAACCCTCAGTCTAGCT-CAAC
*
28215494 CTTAGAC-TAGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
28215521 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 5 0.03
158 140 0.92
159 8 0.05
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGAGCTCTCAAC
CGACCGAAAAGGTAGAATGCACAAGCCGGGGATCACCCCATCCCCTCCTGCGTGCTGTCGATCCC
GCTACCACAACCCTCAGTCTAGCTCAAC
Found at i:28215523 original size:26 final size:26
Alignment explanation
Indices: 28215494--28215546 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28215484 CTGATCCAAC
28215494 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
28215520 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
28215546 C
1 C
28215547 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28215618 original size:537 final size:538
Alignment explanation
Indices: 28214614--28215618 Score: 1343
Period size: 537 Copynumber: 1.9 Consensus size: 538
28214604 CCGATCTTGC
* * * *
28214614 TGCCATAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTTCGTATTCCTAAGCCAACCG
1 TGCCACAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCC
* * * * * * *
28214679 ATGAAACGAGCGTGCGAGCTCTGAGCCGACCGGAGAGGGAGAATGCGCAACCCGAGGATCGGCCC
66 ACGAAACGAGCATGCGAGCTCTGAACCGACCGAAAAGGGAGAATGCACAACCCGAGGATCGACCC
** * * *
28214744 GGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
131 CATCCCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATG
* ** *
28214809 GAATCAACTCCCTATGCCTTAGCCAACCCATGAAACGGGCATACGGGCGCTCAACCGGCCGGAGA
196 GAATCAACTCCCTATGCCTAAGCCAACCCATGAAACGAACATACGGGCGCTCAACCGACCGGAGA
* * * *
28214874 GGCAGAATGCATAAGCCGGGGATCGGCCCGATCTCCCCTGCGTGCTATCGATCCTACTATCGTAA
261 GGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTACCGTAA
* * * *
28214939 CCCTCGATCCAGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACACC
326 CCCTCGATCCAGTCCAACCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACACC
* ** * * *
28215004 GTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCATAATGCG
391 GTATGCCTAAGTCAACCAACAAAACGAGCGTACGAACGCTCAACCGGCCAGAGAGGCAGAATGCG
*
28215069 TAAGCCGGGGATCATCTCGGTCCCTCTCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTGTAGA
456 CAAGCCGGGGATCATCTCGGTCCCTCTCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTGTAGA
28215134 TCCTGCTGCCAGTCCTAT
521 TCCTGCTGCCAGTCCTAT
* **
28215152 TGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCC
1 TGCCACAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCC
* * * * *
28215217 ACGAAACGAGCATGCGAGCTCTGAACCGGCCGAAAAGGTAGAATGCACAAGCTGGGGATC-ACCC
66 ACGAAACGAGCATGCGAGCTCTGAACCGACCGAAAAGGGAGAATGCACAACCCGAGGATCGACCC
* *
28215281 CATCCCCTTCTGCGTGCTGTCGATCCCGCTACCACAACCCTC-AGTCTAGCTGGGGCTTAGACAT
131 CATCCCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCGA-TCCAGCTGGGGCTTAGACAT
* * * * * * *
28215345 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAATCGATCGGAG
195 GGAATCAACTCCCTATGCCTAAGCCAACCCATGAAACGAACATACGGGCGCTCAACCGACCGGAG
* * * * * *
28215410 AGGTAGAATGCACAAGCCGGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTA
260 AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTACCGTA
* * *
28215475 ACCCTCGGT-CTGATCCAACCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACT
325 ACCCTCGATCCAG-TCCAACCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACA
* * ** * *
28215539 CCGTATGCCTAAGTCAACCAACGAAATGAGCGTGTGAACGCTC-AGCGGACCAGAGAGGCAGGAT
389 CCGTATGCCTAAGTCAACCAACAAAACGAGCGTACGAACGCTCAACCGG-CCAGAGAGGCAGAAT
*
28215603 GCGCAAGCTGGGGATC
453 GCGCAAGCCGGGGATC
28215619 GAACGGGTGG
Statistics
Matches: 396, Mismatches: 68, Indels: 7
0.84 0.14 0.01
Matches are distributed among these distances:
536 7 0.02
537 282 0.71
538 107 0.27
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (538 bp):
TGCCACAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCC
ACGAAACGAGCATGCGAGCTCTGAACCGACCGAAAAGGGAGAATGCACAACCCGAGGATCGACCC
CATCCCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATG
GAATCAACTCCCTATGCCTAAGCCAACCCATGAAACGAACATACGGGCGCTCAACCGACCGGAGA
GGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTACCGTAA
CCCTCGATCCAGTCCAACCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACACC
GTATGCCTAAGTCAACCAACAAAACGAGCGTACGAACGCTCAACCGGCCAGAGAGGCAGAATGCG
CAAGCCGGGGATCATCTCGGTCCCTCTCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTGTAGA
TCCTGCTGCCAGTCCTAT
Found at i:28216267 original size:26 final size:26
Alignment explanation
Indices: 28216228--28216280 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28216218 GGCTCAAACT
28216228 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
28216254 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
28216280 C
1 C
28216281 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:28216448 original size:26 final size:26
Alignment explanation
Indices: 28216412--28216464 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28216402 TCGGTCCAAC
*
28216412 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
28216438 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
28216464 C
1 C
28216465 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:28217186 original size:26 final size:26
Alignment explanation
Indices: 28217148--28217200 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28217138 GGCTTAAACT
28217148 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28217174 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28217200 C
1 C
28217201 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28217596 original size:26 final size:26
Alignment explanation
Indices: 28217567--28217618 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
28217557 GGGCGCTCAA
28217567 CCGGTCGGAGAGACAGAATGCGCAAG
1 CCGGTCGGAGAGACAGAATGCGCAAG
**
28217593 CCGGTCGGAGAGGTAGAATGCGCAAG
1 CCGGTCGGAGAGACAGAATGCGCAAG
28217619 TCGAGGATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.40, T:0.10
Consensus pattern (26 bp):
CCGGTCGGAGAGACAGAATGCGCAAG
Found at i:28217723 original size:26 final size:26
Alignment explanation
Indices: 28217687--28217739 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28217677 TTGGTTTGAT
28217687 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28217713 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28217739 C
1 C
28217740 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28218604 original size:26 final size:26
Alignment explanation
Indices: 28218575--28218627 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28218565 CCAGTCTGAT
28218575 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
28218601 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
28218627 C
1 C
28218628 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:28219610 original size:158 final size:157
Alignment explanation
Indices: 28219306--28219726 Score: 415
Period size: 158 Copynumber: 2.7 Consensus size: 157
28219296 TCGGGGTTCA
* * * **
28219306 ACCCGGTCCCCCTACGTGCTATCGATCCTAGTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACT
1 ACCCGGTCCCCCTACGTGCTATCGATCCTAGTATCACAACCCTCGGTCTGATCAAATCTTAGACT
* * *
28219371 GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCAGCAGGA
66 GGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTGCGGGCGCTAAGCCAGCAGGA
*
28219436 GAGACAGAAAGTGCAAGCCGAGGATCG
131 GAGACAGAAAGCGCAAGCCGAGGATCG
*
28219463 ACCCGGTCCCTCCTACGTGC-AGTCGATCCT-GCTATCATAACCCTCGGTGC-GATCAAATCTTA
1 ACCCGGTCCC-CCTACGTGCTA-TCGATCCTAG-TATCACAACCCTCGGT-CTGATCAAATCTTA
* * *
28219525 GACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGTGTTCGGGTGCTAAGCCAGC
62 GACTGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTGCGGGCGCTAAGCCAG-
* * * *
28219590 CA-GAGAGGCATAACGCGCAAGCCGGGGATCG
126 CAGGAGAGACAGAAAGCGCAAGCCGAGGATCG
* * * * * * ** * ****
28219621 ACTCAGTCCCCCTCTGCGTGCTGTC-AGTCCCACTGCCACAACCCTCGGTCCGA-CTGGGGCTTA
1 ACCCGGT-CCCC-CTACGTGCTATCGA-TCCTAGTATCACAACCCTCGGTCTGATC-AAATCTTA
* *
28219684 GACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
62 GAC-TGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACG
28219727 GGCGTACAGG
Statistics
Matches: 218, Mismatches: 33, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
157 12 0.06
158 130 0.60
159 75 0.34
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (157 bp):
ACCCGGTCCCCCTACGTGCTATCGATCCTAGTATCACAACCCTCGGTCTGATCAAATCTTAGACT
GGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTGCGGGCGCTAAGCCAGCAGGA
GAGACAGAAAGCGCAAGCCGAGGATCG
Found at i:28219746 original size:159 final size:158
Alignment explanation
Indices: 28219363--28219770 Score: 428
Period size: 159 Copynumber: 2.6 Consensus size: 158
28219353 CTGGTCTGAT
* *
28219363 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGC
* * * *
28219428 CAG-CAGGAGAGACAGAAAGTGCAAGCCGAGGATCGACCCGGTCCCTCCTACGTGCAGTCGATCC
66 CAGCCA-GAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCAGTCGATCC
** * * * *
28219492 TGCTATCATAACCCTCGGTGCGATCAAAT
130 CACTACCACAACCCTCGGTCCGATCAAAG
** * * *
28219521 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGTGTTCGGGTGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGC
* * * * * *
28219586 CAGCCAGAGAGGCATAACGCGCAAGCCGGGGATCGACTCAGTCCCCCTCTGCGTGCTGTC-AGTC
66 CAGCCAGAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCAGTCCCCC-CTACGTGCAGTCGA-TC
* ***
28219650 CCACTGCCACAACCCTCGGTCCGA-CTGGGG
129 CCACTACCACAACCCTCGGTCCGATC-AAAG
* * * * *
28219680 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAGGCGTTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAG
* * *
28219744 CCAGCCAGAGAGGTAGAATGCCCAAGC
65 CCAGCCAGAGAGGCAGAAAGCGCAAGC
28219771 TAGGGATCGA
Statistics
Matches: 205, Mismatches: 40, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
158 97 0.47
159 107 0.52
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.17
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGC
CAGCCAGAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCAGTCGATCCC
ACTACCACAACCCTCGGTCCGATCAAAG
Found at i:28221305 original size:26 final size:26
Alignment explanation
Indices: 28221268--28221323 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
28221258 GAAACCCCTA
28221268 ATGCTTACACTGAGGATGAACT-TCGT
1 ATGCTTACACTGAGGATGAACTCT-GT
* *
28221294 ATGCTTAGACTGGGGATGAACTCTGT
1 ATGCTTACACTGAGGATGAACTCTGT
28221320 ATGC
1 ATGC
28221324 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
ATGCTTACACTGAGGATGAACTCTGT
Found at i:28221975 original size:316 final size:315
Alignment explanation
Indices: 28221459--28222034 Score: 814
Period size: 315 Copynumber: 1.8 Consensus size: 315
28221449 CTGCTACCAT
* * * * *
28221459 AACCCTTGGTTCGACTGAGGCTTAAACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGATTCGACTGAGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * **
28221524 CGAGCGTGCGTAAGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGTTGGGGACCGACCCAATCCC
66 CGAGCGTGCGGAAGCTCAGCCGACCGAAGAGACAGAATACGCAAGCCGGGGACCGACCCAATCCC
** * *
28221589 CCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAAC
131 CCTACGTGCTACCGATCATGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAAC
* *
28221654 TCCGTATGCCTAAGTCAACCCACGACATGAGCGTGCGGGCGCTGAGCCGA-TCGGAGAGGCATAA
196 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACT-GGAGAGGCATAA
28221718 TCGCAAGTTGGGGATCGGCCCGGTCCATTTCTGTGTGCTGTCGATCCCACTGCCAC
260 TCGCAAGTTGGGGATCGGCCCGGTCCATTTCTGTGTGCTGTCGATCCCACTGCCAC
* * * *
28221774 AACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCACGAAA
1 AACCCTCGATTCGACTGAGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* ** * * *
28221839 CGGGCGTGCGGGTGCTCAGCCGACCGGAGAGACAGAATACGCAAGCCGGGGATCGACCCGATCCC
66 CGAGCGTGCGGAAGCTCAGCCGACCGAAGAGACAGAATACGCAAGCCGGGGACCGACCCAATCCC
* * * * *
28221904 TCCTACGTGCTACCGATCATTCTACCGTAACCCTCTGT-CTGATCTGATCTTAGATTGGGAATGA
131 -CCTACGTGCTACCGATCATGCTACCGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGA
* *
28221968 ACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTTCGGGCGCTGAGCCGACTGGAGAGGCATA
194 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACTGGAGAGGCATA
28222033 AT
259 AT
28222035 GTGTAAGCTA
Statistics
Matches: 225, Mismatches: 33, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
315 112 0.50
316 112 0.50
317 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (315 bp):
AACCCTCGATTCGACTGAGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGAAGCTCAGCCGACCGAAGAGACAGAATACGCAAGCCGGGGACCGACCCAATCCC
CCTACGTGCTACCGATCATGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACTGGAGAGGCATAAT
CGCAAGTTGGGGATCGGCCCGGTCCATTTCTGTGTGCTGTCGATCCCACTGCCAC
Found at i:28222049 original size:158 final size:157
Alignment explanation
Indices: 28221488--28222052 Score: 539
Period size: 158 Copynumber: 3.6 Consensus size: 157
28221478 GCTTAAACAT
* * *** *
28221488 GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGTAAGCTCAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * *
28221553 AGGCAGAATGCGCAAGTTGGGGACCGACCCAATCCC-CCTACGTGCTGTCGATCCTGCTGCCGCA
66 AGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCTCCTACGTGCTGTCGATCCTACTGCCGCA
* *
28221617 ACCCTCGGTC-CAGTCTGATCTTAGACTG
131 ACCCTC-GTCTGA-TCTGATCTTAGAATG
* * * * *
28221645 GGAATGAACTCCGTATGCCTAAGTCAACCCACGACATGAGCGTGCGGGCGCTGAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * ** * *
28221710 AGGCATAAT-CGCAAGTTGGGGATCGGCCCGGTCCATTTCTGTGTGCTGTCGATCCCACTGCCAC
66 AGGCAGAATGCGCAAGCTGGGGATCGACCCGATCC-CTCCTACGTGCTGTCGATCCTACTGCCGC
* **
28221774 AACCCTCGAT-TCG-GCTGGGGCTTAGACAT-
130 AACCCTCG-TCT-GATCT-GATCTTAGA-ATG
* * * *
28221803 GGAATGAACTCCCTATGCGTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * ** * * * *
28221868 AGACAGAATACGCAAGCCGGGGATCGACCCGATCCCTCCTACGTGCTACCGATCATTCTACCGTA
66 AGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCTCCTACGTGCTGTCGATCCTACTGCCGCA
*
28221933 ACCCTCTGTCTGATCTGATCTTAGATTG
131 ACCCTC-GTCTGATCTGATCTTAGAATG
** * * *
28221961 GGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTTCGGGCGCTGAGCCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * *
28222026 AGGCATAATGTGTAAGCTAGGGATCGA
66 AGGCAGAATGCGCAAGCTGGGGATCGA
28222053 ACGGGTGGTA
Statistics
Matches: 321, Mismatches: 75, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
156 21 0.07
157 66 0.21
158 208 0.65
159 26 0.08
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCTCCTACGTGCTGTCGATCCTACTGCCGCA
ACCCTCGTCTGATCTGATCTTAGAATG
Found at i:28222698 original size:26 final size:25
Alignment explanation
Indices: 28222661--28222738 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
28222651 GCTCAAAATT
28222661 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACT-GGAATGAACTCCGTATGC
*
28222687 TTAGACGTGGAATGAACTCCATATGC
1 TTAGAC-TGGAATGAACTCCGTATGC
28222713 TTAGACATGGAATGAACTCCGTATGC
1 TTAGAC-TGGAATGAACTCCGTATGC
28222739 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (25 bp):
TTAGACTGGAATGAACTCCGTATGC
Found at i:28222899 original size:26 final size:26
Alignment explanation
Indices: 28222870--28222922 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28222860 CTGGTCTGAT
*
28222870 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGCGG-ATGAACTCCGTATG
28222896 CTTAGACTGCGGATGAACTCCGTATG
1 CTTAGACTGCGGATGAACTCCGTATG
28222922 C
1 C
28222923 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCCGTATG
Found at i:28223267 original size:26 final size:26
Alignment explanation
Indices: 28223238--28223290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28223228 CCGGTCTGAT
28223238 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
28223264 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28223290 C
1 C
28223291 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28223389 original size:368 final size:368
Alignment explanation
Indices: 28222711--28223398 Score: 884
Period size: 368 Copynumber: 1.9 Consensus size: 368
28222701 AACTCCATAT
* * * * *
28222711 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCTTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAC
** * ** *
28222776 TCGATTGGAGAGGCAGAATGCTCAAGCTGAGGATTGGTCCGATCCCCCCTGCGTGCTACCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAAGCTGAGGACCGGTCCGATCCCCACTGCGTGCTACCGATCC
* ** * * *
28222841 TGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGC
131 TACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGC
* * ** *
28222906 GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGAGTGCGGGTGCTCAGTCGGTCGGAGA
196 GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGAGTGCGCGCGCTCAACCGGCCGGAGA
* * * * *
28222971 GGCCAGTCGAAGAGGCATAATACGAAAGTCGGGGATGAGCTCGATCCCCCTCTGGGTGCTGTCAA
261 GGCCAGTCGAACAGGCATAATACGAAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAA
28223036 TCTCGCTATCGGTTCTGCTGCCACAACCCTCGATCCGGTAGGG
326 TCTCGCTATCGGTTCTGCTGCCACAACCCTCGATCCGGTAGGG
* * * *
28223079 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGC-GAGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG-GCACTC-
*
28223143 ACT-GACCGGAGAGGCAGAATGCGCAAGCTG-GGCACCGG-CCTGATCCCTACTGCGTGCTACCG
64 ACTCGACCGGAGAGGCAGAATGCGCAAGCTGAGG-ACCGGTCC-GATCCCCACTGCGTGCTACCG
*** *
28223205 ATCCTACTGTTGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
127 ATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* * *
28223270 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCA-TGCGCGCGCTCAACCGGCC
192 CTGCGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAG-AGTGCGCGCGCTCAACCGGCC
** * * *
28223334 GGAGAGGCTGGTCGGACAGGCATAATGCGCAAGCCGGGGATCAGCCC-AGTCCCCCTCTGCGTGC
256 GGAGAGGCCAGTCGAACAGGCATAATACGAAAGCCGGGGATCAGCCCGA-TCCCCCTCTGCGTGC
28223398 T
320 T
28223399 ACCACAACCC
Statistics
Matches: 270, Mismatches: 44, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
367 6 0.02
368 261 0.97
369 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (368 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAC
TCGACCGGAGAGGCAGAATGCGCAAGCTGAGGACCGGTCCGATCCCCACTGCGTGCTACCGATCC
TACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGC
GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGAGTGCGCGCGCTCAACCGGCCGGAGA
GGCCAGTCGAACAGGCATAATACGAAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAA
TCTCGCTATCGGTTCTGCTGCCACAACCCTCGATCCGGTAGGG
Found at i:28223623 original size:26 final size:26
Alignment explanation
Indices: 28223594--28223646 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28223584 CCAGTCTGAT
* *
28223594 CTTAGACAGGGAATTAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
28223620 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
28223646 C
1 C
28223647 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:28224131 original size:26 final size:26
Alignment explanation
Indices: 28224095--28224147 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28224085 CCGGTCTGAT
* *
28224095 CTTAGATTGGGAATGTACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28224121 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28224147 C
1 C
28224148 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28225185 original size:26 final size:26
Alignment explanation
Indices: 28225149--28225201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28225139 TGGTCCTGAT
*
28225149 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28225175 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28225201 C
1 C
28225202 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28225852 original size:26 final size:26
Alignment explanation
Indices: 28225823--28225874 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28225813 CGATCCGATA
28225823 TTAGACTGGGAATGAA-TTCTGTATGC
1 TTAGACTGGGAATGAACTTC-GTATGC
*
28225849 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
28225875 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:28226134 original size:26 final size:26
Alignment explanation
Indices: 28226096--28226148 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28226086 CCAGTCCGAT
*
28226096 CTTAGACTGGGAAGGAACTCCATATG
1 CTTAGACTGGGAAGGAACACCATATG
* *
28226122 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAAGGAACACCATATG
28226148 C
1 C
28226149 CTAAACCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACACCATATG
Found at i:28226945 original size:26 final size:26
Alignment explanation
Indices: 28226916--28226967 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28226906 CGATCCGATA
28226916 TTAGACTGGGAATGAA-TTCTGTATGC
1 TTAGACTGGGAATGAACTTC-GTATGC
*
28226942 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
28226968 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:28227155 original size:26 final size:26
Alignment explanation
Indices: 28227112--28227164 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28227102 CCGGTCTGAT
28227112 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTTCGTATG
*
28227138 CTTAGACTGAGG-ATGAACTTCGTATG
1 CTTAGACTG-GGAAAGAACTTCGTATG
28227164 C
1 C
28227165 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTTCGTATG
Found at i:28227360 original size:26 final size:26
Alignment explanation
Indices: 28227308--28227360 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28227298 CTAAACCAAT
*
28227308 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
28227334 CTTAGA-TAAGGAATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGCATG
28227360 C
1 C
28227361 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:28227446 original size:196 final size:196
Alignment explanation
Indices: 28227110--28227466 Score: 434
Period size: 196 Copynumber: 1.8 Consensus size: 196
28227100 ATCCGGTCTG
* * * * **
28227110 ATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGAGGATGAACTTCGTATGCCTAAGTGAAC
1 ATCTTAGACTAGGAAAGAACTTCGCATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAAC
* * ** ** * * **
28227175 CCACGAAAGGGAAGTCCGGGCGCTCAGTCGACCGGAGAGGTAGAATGTGCAAGCCGGTGATCGGT
66 CCACGAAAGAGAAGTCCAGGCGCTCAACCGACCGGAGAGGTAGAATGCACAAGCAGGTGACCGAC
** *
28227240 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTACTGGTGCTGCTGCTGCAACCCTCGGTCTAAACC
131 CCAATCCCCCCTACGTGCTGTCAATCCTGCTACTGGTGCTGCTGCTGCAACCCTCGGTCTAAACC
28227305 A
196 A
*
28227306 ATCTTAGACTAGGAATGAAC-TCTGCATGCTTAGA-TAAGGAATGAACTCCGTATGCCTAAGCCA
1 ATCTTAGACTAGGAAAGAACTTC-GCATGCTTAGACTAAGG-ATGAACTCCGTATGCCTAAGCCA
* * *
28227369 ACCCACGAAATGAG-CGTGCAGGCGCTCAACCGACTGGAGAGGTAGAATGCACAAGCTAGG-GAC
64 ACCCACGAAA-GAGAAGTCCAGGCGCTCAACCGACCGGAGAGGTAGAATGCACAAGC-AGGTGAC
*
28227432 CGACCCAATCCCCCCTATGTGCTGTCAATCCTGCT
127 CGACCCAATCCCCCCTACGTGCTGTCAATCCTGCT
28227467 GCTGCAACCC
Statistics
Matches: 133, Mismatches: 24, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
195 6 0.05
196 123 0.92
197 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (196 bp):
ATCTTAGACTAGGAAAGAACTTCGCATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAAC
CCACGAAAGAGAAGTCCAGGCGCTCAACCGACCGGAGAGGTAGAATGCACAAGCAGGTGACCGAC
CCAATCCCCCCTACGTGCTGTCAATCCTGCTACTGGTGCTGCTGCTGCAACCCTCGGTCTAAACC
A
Found at i:28227633 original size:158 final size:158
Alignment explanation
Indices: 28227343--28227645 Score: 351
Period size: 158 Copynumber: 1.9 Consensus size: 158
28227333 GCTTAGATAA
* *
28227343 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAACCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCGGAG
* * * * * * **
28227408 AGGTAGAATGCACAAGCTAGGGACCGACCCAATCCCCCCTATGTGCTGTCAATCCTGCTGCTGCA
66 AGGCAAAATGCACAAGCCAGGGACCGACCCAATCCCCCCTACGTGCTGTCAATCCCGCTACCACA
28227473 ACCCTCGGTCCGGTCTGATCTTAAACTG
131 ACCCTCGGTCCGGTCTGATCTTAAACTG
** * * * *
28227501 GGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTTCGGGCGCTGAGCC-AGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGA-CCGGA
* * * * **
28227565 GAGGCAAAATGCACAAGCCAGGGA-TG-GCCAGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACC
65 GAGGCAAAATGCACAAGCCAGGGACCGACCCA-ATCCCCC-CTACGTGCTGTCAATCCCGCTACC
*
28227628 ACAACCTTCGGTCCGGTC
128 ACAACCCTCGGTCCGGTC
28227646 GGAGAGGCAT
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
156 3 0.03
157 8 0.07
158 108 0.91
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCGGAG
AGGCAAAATGCACAAGCCAGGGACCGACCCAATCCCCCCTACGTGCTGTCAATCCCGCTACCACA
ACCCTCGGTCCGGTCTGATCTTAAACTG
Found at i:28227954 original size:26 final size:26
Alignment explanation
Indices: 28227916--28227968 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28227906 GCAGTCCGAT
28227916 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
28227942 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
28227968 C
1 C
28227969 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:28228304 original size:159 final size:157
Alignment explanation
Indices: 28227941--28228378 Score: 448
Period size: 159 Copynumber: 2.8 Consensus size: 157
28227931 AACTACGTAT
* * * *
28227941 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
28228006 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCTCCTGCCTGCTATCGATCC
66 TC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCCACCGATCC
* * * * *
28228071 TGCTGTCGCAACCCTCACTTCGGTCTGA
130 CGCTGCCACAACCCTCACTCCAGTCTGA
* * * * * * * *
28228099 TCTTAGAC-TGTGAATTAACTTCGAATGCCTAAGTCAACCCATAAAATGAGCGTACGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCA
* * * * * *
28228163 GTCAGCCGGAGACGCATAATGCGCAAGCCGAGGATCGGCCAGGTCCCCCCTTGCGTGCCGCCGGT
65 GTC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCC-TGCGTGCCACCGAT
* ** *
28228228 CCCGCTGCCACATCCCTCGGTCCAG-CTGGG
128 CCCGCTGCCACAACCCTCACTCCAGTCT-GA
* * *
28228258 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* *
28228323 TCGACCGGAGAGGCAGAATGCGTAAGCCGGGGAACGGCCCGGTCCCCCCTGCGTGC
66 TCG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGC
28228379 TGCTGATGCT
Statistics
Matches: 222, Mismatches: 53, Indels: 10
0.78 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 99 0.45
159 119 0.54
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
TCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCCACCGATCCC
GCTGCCACAACCCTCACTCCAGTCTGA
Found at i:28228636 original size:26 final size:26
Alignment explanation
Indices: 28228600--28228649 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
28228590 TCGGTCTGAT
28228600 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28228626 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
28228650 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28228642 original size:183 final size:184
Alignment explanation
Indices: 28228258--28228810 Score: 565
Period size: 183 Copynumber: 3.0 Consensus size: 184
28228248 TCCAGCTGGG
* * * * * *
28228258 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCATGCGGGCGCTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
** * * ** * *
28228322 GTCGACCGGAGAGGCAGAATGCGTAAGCCGGGGAACGGCCCGGTCCCCCCTGCGTGCTGCTGATG
65 GTCGACCGGAGAGGCAGAATGCACAAGCCGAGGAACAGCCCAATCCCCCCTGCATGCTGCTGATC
*
28228387 CTACTGCCACAACCCTCGGCCCGATCTGATATTAGACTGGGAATAAACTCCGTAT
130 CTACTGCCACAACCCTCAGCCCGATCTGATATTAGACTGGGAATAAACTCCGTAT
* *
28228442 GTTTTGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * ** *
28228507 TCGATCGGAGAGGC-GAAATGCACAAG-CGAGGATCAGCCCAATCCGTCCTGCATGCTGCTGGTC
66 TCGACCGGAGAGGCAG-AATGCACAAGCCGAGGAACAGCCCAATCCCCCCTGCATGCTGCTGATC
* * ** * * *
28228570 CTACTGCCGCGACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTACTGCCACAACCCTCAGCCCGATCTGATATTAGACTGGGAATAAACTCCGTAT
* *
28228625 GCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * ** * * * * ** * * *
28228690 CCGGCTAGAGAGGCAGAATGCGCAAGCTGAGGACCGGCCTGATCCCCCATACGTGCTG-TCGATC
66 TCGACCGGAGAGGCAGAATGCACAAGCCGAGGAACAGCCCAATCCCCCCTGCATGCTGCT-GATC
** ** * * * * * *
28228754 CTGTTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
130 CTACTGCCACAACCCTCAGCCCGATCTGATATTAGACTGGGAATAAACTCCGTAT
28228809 GC
1 GC
28228811 CTAAGTCAAC
Statistics
Matches: 305, Mismatches: 59, Indels: 10
0.82 0.16 0.03
Matches are distributed among these distances:
183 156 0.51
184 149 0.49
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (184 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCACAAGCCGAGGAACAGCCCAATCCCCCCTGCATGCTGCTGATCC
TACTGCCACAACCCTCAGCCCGATCTGATATTAGACTGGGAATAAACTCCGTAT
Found at i:28229123 original size:158 final size:157
Alignment explanation
Indices: 28228626--28229128 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 157
28228616 ACTCCGTATG
* *
28228626 CTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
28228691 CGGCTAGAGAGGCAGAATGCGCAAGCTGAGGACCGGCCTGATCCCCCATACGTGCTGTCGATCCT
66 C-GCTGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCT
* * ** * * *
28228756 GTTGCTGCAACCCTCGGTCCGATCCGAT
130 GCTACCACAACCCTCGATCTGGTCCGAT
* * * * * *
28228784 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
28228849 CGATCGAAGAGGCATAATGCACAAGCTGAGGATCGGCCCGGTCCCCCCTCTGCGTGCTGCCGGTC
66 CGCT-GGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTGGT-CCCCC-CTGCGTGCTGCCGATC
* * **
28228914 CTGCTACCCCAACCCTCGATCTGG-CTGGGG
128 CTGCTACCACAACCCTCGATCTGGTC-CGAT
* * *
28228944 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
28229008 CCAGCTGGAGAGGCAGAATGCGTAAG-TCGGGGATCAGCCTGGTCCCCCCTGCATGTTACCGATC
65 CC-GCTGGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATC
* * *
28229072 CTGCTACCACACCCCTTGATCTGGTCCAAT
128 CTGCTACCACAACCCTCGATCTGGTCCGAT
*
28229102 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
28229129 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 145 0.52
159 13 0.05
160 113 0.41
161 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGCTGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCTG
CTACCACAACCCTCGATCTGGTCCGAT
Found at i:28229138 original size:26 final size:26
Alignment explanation
Indices: 28229102--28229154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28229092 CTGGTCCAAT
*
28229102 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28229128 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28229154 C
1 C
28229155 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28229794 original size:26 final size:26
Alignment explanation
Indices: 28229756--28229808 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28229746 CCAGTCCGAT
*
28229756 CTTAGACTGGGAAGGAACTCCATATG
1 CTTAGACTGGGAAGGAACACCATATG
* *
28229782 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAAGGAACACCATATG
28229808 C
1 C
28229809 CTAAACCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACACCATATG
Found at i:28231099 original size:158 final size:158
Alignment explanation
Indices: 28230730--28231105 Score: 381
Period size: 158 Copynumber: 2.4 Consensus size: 158
28230720 CCCCTACGGG
28230730 CTATCGATCCTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACT-TCGTAT
1 CTAT-GATCCTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCTCGTAT
* * * *
28230794 GCCTAAGTCAACCCACAAAAAGTGCATGCGGGCGCTGAGCCAGTCGGAGAGGCATAATGCACAAG
65 GCCTAAGTCAACCCACAAAAAGTG-ATGCGGGCACTCAACCAGTCGGAGAGGCAGAATGCACAAG
* *
28230859 TCGGGGACCGGCCCGATCCCCCTCTACGTA
129 CCGGGGACCGGCCCGATCCCCCTCTACATA
* * * * * * * **
28230889 CTATCAGTCCCGCTGCCACAACCCTCGGTTCGGCT-GGGGCTTAGACAT--GAATGAACTCTC-T
1 CTATGA-TCCTGCTGCCGCAACCCTCAG-TCTGATCCGATCTTAGAC-TGGGAATGAACTCTCGT
* * * * *
28230950 ATGCCTAAG-CTAACCCATGAAACAGGTG-TGCGGGCACTCAACCGGTCGGAGAGGTAGAATGCG
63 ATGCCTAAGTC-AACCCA-CAAA-AAGTGATGCGGGCACTCAACCAGTCGGAGAGGCAGAATGCA
* ** * *
28231013 TAAGCCGGGGGTCGGCCCGATCCCCCT-TTCATG
125 CAAGCCGGGGACCGGCCCGATCCCCCTCTACATA
*
28231046 CTACTGATCCTGCTGTCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCT
1 CTA-TGATCCTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCT
28231106 GCATGCTTAG
Statistics
Matches: 171, Mismatches: 35, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
156 5 0.03
157 32 0.19
158 90 0.53
159 35 0.20
160 9 0.05
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
CTATGATCCTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCTCGTATG
CCTAAGTCAACCCACAAAAAGTGATGCGGGCACTCAACCAGTCGGAGAGGCAGAATGCACAAGCC
GGGGACCGGCCCGATCCCCCTCTACATA
Found at i:28231137 original size:26 final size:26
Alignment explanation
Indices: 28231085--28231137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28231075 CTGATCCGAT
*
28231085 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
28231111 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
28231137 C
1 C
28231138 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:28231793 original size:26 final size:26
Alignment explanation
Indices: 28231755--28231807 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
28231745 GGCTCAAACT
28231755 CTTAGACTGGGAAT-ATACTCCGTATG
1 CTTAGACTGGGAATGA-ACTCCGTATG
28231781 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28231807 C
1 C
28231808 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28232082 original size:159 final size:159
Alignment explanation
Indices: 28231780--28232090 Score: 347
Period size: 159 Copynumber: 2.0 Consensus size: 159
28231770 TACTCCGTAT
* ** ** *
28231780 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAAAAACGAGCATACGGGCACTCAG
* * * * * * * * * *
28231845 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCTGGTCCCCCTCTGCGTGCTGCCGGTC
66 TCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCTCAGCATGCTACCGATC
*
28231910 CCGCTGCCACAACCCTCGGTCCGGCTGGG
131 CCGCAGCCACAACCCTCGGTCCGGCTGGG
* * *
28231939 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAACGGGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-AAAAACGAGCATACGGGCACTCA
* * **
28232004 G-CTGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCT-AGCATGCTATTGA
65 GTC-GACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCTCAGCATGCTACCGA
* * *
28232067 TCCTGCAGCCGCAACCTTCGGTCC
129 TCCCGCAGCCACAACCCTCGGTCC
28232091 AGTTCGATCT
Statistics
Matches: 123, Mismatches: 27, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
159 68 0.55
160 55 0.45
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAAAAACGAGCATACGGGCACTCAG
TCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCTCAGCATGCTACCGATC
CCGCAGCCACAACCCTCGGTCCGGCTGGG
Found at i:28232135 original size:26 final size:26
Alignment explanation
Indices: 28232099--28232151 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28232089 CCAGTTCGAT
*
28232099 CTTAGACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCTATATG
* *
28232125 CTTACACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTATATG
28232151 C
1 C
28232152 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTATATG
Found at i:28232208 original size:13 final size:13
Alignment explanation
Indices: 28232190--28232215 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28232180 GGCACTCAGT
28232190 CGATCGGAGAGGC
1 CGATCGGAGAGGC
28232203 CGATCGGAGAGGC
1 CGATCGGAGAGGC
28232216 AAAATACGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:28232337 original size:26 final size:26
Alignment explanation
Indices: 28232308--28232360 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28232298 CCAATCTGAT
*
28232308 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATAAACTCCATATG
*
28232334 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCATATG
28232360 C
1 C
28232361 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:28232556 original size:196 final size:196
Alignment explanation
Indices: 28232305--28232666 Score: 494
Period size: 196 Copynumber: 1.8 Consensus size: 196
28232295 GATCCAATCT
* *
28232305 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCAAA
*
28232370 CCCACGAAAGGAACGTACGGGCGCTCAGCCGACT-GGAGAGGAAGAATGCACAAG-TCGGGGATC
66 CCCACGAAAGGAACGTACGGGCGCTCAGCC-ACTCGGAGAGGAAGAATGCACAAGCT-GGGGACC
* * * * *
28232433 GATCCGGTCCCTCTTGCGTGCTGTCGATCCTACTACTGGTCTGACTGCCACAACCCTCGGTTCGG
129 GACCCGGTCCCCCCTGCGTGCTATCGATCCTACGACTGGTCTGACTGCCACAACCCTCGGTTCGG
28232498 TCC
194 TCC
* * *
28232501 GATCTTAGATTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAA
1 GATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCAAA
* * * ** * * * * * *
28232566 CCTAGGAAATGAGTGTGCGGGCGCTCAGCCAGTCGGAGAGGTAGAATGCGCTAGCTGGGGACCGG
66 CCCACGAAAGGAACGTACGGGCGCTCAGCCACTCGGAGAGGAAGAATGCACAAGCTGGGGACCGA
28232631 CCCGGTCCCCCCTGCGTGCTATCGATCCTACGACTG
131 CCCGGTCCCCCCTGCGTGCTATCGATCCTACGACTG
28232667 CATCCCTTGG
Statistics
Matches: 142, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 2 0.01
196 139 0.98
197 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (196 bp):
GATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCAAA
CCCACGAAAGGAACGTACGGGCGCTCAGCCACTCGGAGAGGAAGAATGCACAAGCTGGGGACCGA
CCCGGTCCCCCCTGCGTGCTATCGATCCTACGACTGGTCTGACTGCCACAACCCTCGGTTCGGTC
C
Found at i:28232955 original size:159 final size:159
Alignment explanation
Indices: 28232531--28232979 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 159
28232521 CTCCGTATGC
* * * *
28232531 TTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCTAGGAAATGAGTGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAAAGAGTGTGCGGGTGCTCAGCC
* * * *
28232596 AGTCGGAGAGGTAGAATGCGCT-AGCTGGGGACCGGCCCGGTCCCCC-CTGCGTGCTATCGATCC
66 AGTCGGAGAGGCAGAATGCG-TAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * **
28232659 TAC-GACTGCATCCCTTGGTCCAGTCCTATC
130 TGCTGACCACAACCCTCGGTCCAG-CCTAGA
* * *
28232689 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATAAGCGT-T-CGGGTGCTAA
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-GGAA-AAGAGTGTGCGGGTGCTCA
* * * * * * * *
28232751 GCC-GATCGGAGAGGCATAATGCATAAGTCGGGGATTGGTCTGGTCCCCCTCTGCGTGTTGTCGG
63 GCCAG-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGA
*
28232815 TCCTGCTG-CCACAACCCTCGGTCCAG-CTGGGGA
127 TCCTGCTGACCACAACCCTCGGTCCAGCCT--AGA
* * * * *
28232848 TTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAAAGAGTGTGCGGGTGCTCAGCC
* * * * *
28232913 AGCCGAAGAGGCAGAATGTGTAAGCCGAGGATCGGCCCGGTCCCCCT-TGCATGCTGTCGATCCT
66 AGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCT
28232977 GCT
131 GCT
28232980 ATCGTAACCT
Statistics
Matches: 231, Mismatches: 47, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
157 9 0.04
158 99 0.43
159 116 0.50
160 7 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAAAGAGTGTGCGGGTGCTCAGCC
AGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTGACCACAACCCTCGGTCCAGCCTAGA
Found at i:28233048 original size:26 final size:26
Alignment explanation
Indices: 28233006--28233056 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
28232996 GGTCCGATCT
*
28233006 TAGACTGGGAATAAACTTCGTATGCA
1 TAGACTGGGAATAAACTCCGTATGCA
* *
28233032 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATAAACTCCGTATGC
28233057 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCA
Found at i:28233388 original size:26 final size:26
Alignment explanation
Indices: 28233359--28233408 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
28233349 CCGATCCGAT
28233359 CTTAGAC-TGGGAATGAACTCCGTACA
1 CTTAGACAT-GGAATGAACTCCGTACA
28233385 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
28233409 TGCCTAAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACA
Found at i:28233618 original size:343 final size:348
Alignment explanation
Indices: 28232817--28233655 Score: 851
Period size: 354 Copynumber: 2.4 Consensus size: 348
28232807 GTTGTCGGTC
* * * * * *
28232817 CTGCTGCCACAACCCTCGGTCCAGCTGGGGATTAGACATGCAATGAACTCCCTATGCCTAAGCCA
1 CTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
28232882 ACCCATGAAACGGGTGTGCGGGTGCTCAGCC-AGCCGAAGAGGCAGAATGTGTAAGCCGAGGATC
66 ACCCACGAAACGAGAGTGCGGGTGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * * * * *
28232946 GGCCCGGTCCCCCTTGCATGCTGTCGATCCTGCTATCGTAACCTCAGTTAGGTCCGATCTTAGAC
130 AGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCGCAACCTCAGTCAGATCCGATCTTAGAC
* ** * *
28233011 TGGGAATAAACTTCGTATGCATAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAA
195 TGGGAATAAACTCCGTACACATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAA
* * * * * * * *
28233076 GAGTGTGCGGGCACTCAGCAGGCCGGAGGGGCATATTGCGCAAGCCGGGGATAAGCCCGATCCCC
260 GAGCGTACGGGCACTCAACAGGCCGGAGAGACAGAATGCGCAAGCCGGGGATAAGCCCAATCCCC
* * ** *
28233141 CTCTGCGGGCTGTTGATCTCGTTGCCGGTC
325 CTCT---GGC-GATGA-CTCATT-CCAATA
*
28233171 CTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAACCCA
1 CTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * **
28233236 ACCCACGAAATGAGCGTGCAAGCGCTTAATCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCA
66 ACCCACGAAACGAGAGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCA
* * *
28233301 GCCTGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTC-GATCCGATCCGATCTTAGA
131 GCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCGCAA-CCTCAG-TCAGATCCGATCTTAGA
* *
28233365 CTGGGAATGAACTCCGTACACTTAGACAT-GGAATGAACTCCGTATGCCTAAGGT-AACCCACGA
194 CTGGGAATAAACTCCGTACACATAGAC-TGGGAATGAACTCCGTATGCCTAA-GTCAACCCACGA
* * * * *
28233428 AACGAGCGTACGGGCACTCAACCGGTCGGAGAGACAGAATGCGTAAGCCGGGGACT-GGCCCAAT
257 AAAGAGCGTACGGGCACTCAACAGGCCGGAGAGACAGAATGCGCAAGCCGGGGA-TAAGCCCAAT
28233492 CCCCC-CT-GC-ATG-CT-ATT-CAATA
321 CCCCCTCTGGCGATGACTCATTCCAATA
** * *
28233514 CTGCTACCGTAACCCTCGGTCCGG-T-GTGATCTTAGA-TTGGGAATGAACTCCGTATGCCTAAG
1 CTGCTACCACAACCCTCGGTCCGGCTAG-G-GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
* * * *
28233576 CCAACCCACGAAACGAGAGTTCGGGTGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGA
63 CCAACCCACGAAACGAGAGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
*
28233641 TCAGCCCGATCCCCC
128 TCAGCCCGGTCCCCC
28233656 TTTGCGTGCT
Statistics
Matches: 402, Mismatches: 74, Indels: 29
0.80 0.15 0.06
Matches are distributed among these distances:
341 1 0.00
342 3 0.01
343 119 0.30
345 2 0.00
346 2 0.00
348 2 0.00
350 2 0.00
354 143 0.36
355 124 0.31
356 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (348 bp):
CTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGAGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCA
GCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCGCAACCTCAGTCAGATCCGATCTTAGACT
GGGAATAAACTCCGTACACATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAG
AGCGTACGGGCACTCAACAGGCCGGAGAGACAGAATGCGCAAGCCGGGGATAAGCCCAATCCCCC
TCTGGCGATGACTCATTCCAATA
Found at i:28234254 original size:26 final size:26
Alignment explanation
Indices: 28234225--28234274 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
28234215 CCGGTCTGAT
28234225 CTTAGAC-TGGGAATGAACTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
28234251 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
28234275 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:28234686 original size:158 final size:158
Alignment explanation
Indices: 28234387--28234686 Score: 331
Period size: 158 Copynumber: 1.9 Consensus size: 158
28234377 CCTGCACCGT
* * * * *
28234387 AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
1 AACCCTCGGTCCGGCTGGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* ** * * * * *
28234452 TGAGCGTTTGGGCGTTGAGCCAGCCGGAGAGGCAAAAATGCAAGCCGGGGATCGACCCGGTCCCC
66 CGAGCGTGCGAGCGCTAAGCCAGCCGGAGAGGCAAAAATGCAAGCCAGGGATCGACCCGATCCCC
**
28234517 CTCTGTGTGCTGCCGATCTCGTTGCCAC
131 CTCTGCATGCTGCCGATCTCGTTGCCAC
*
28234545 AACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCGGTCCGGCTGGAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * **
28234609 ACGGGCGTGCGAGTGCTAAGCC-GACCGGAGAGGC-AGAATGCGCAAGCCAGGGATC-AGTTCGA
65 ACGAGCGTGCGAGCGCTAAGCCAG-CCGGAGAGGCAAAAAT--GCAAGCCAGGGATCGA-CCCGA
28234671 TCCCCC-CTGCATGCTG
126 TCCCCCTCTGCATGCTG
28234687 TCAATCCTGC
Statistics
Matches: 116, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
157 5 0.04
158 89 0.77
159 22 0.19
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
AACCCTCGGTCCGGCTGGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CGAGCGTGCGAGCGCTAAGCCAGCCGGAGAGGCAAAAATGCAAGCCAGGGATCGACCCGATCCCC
CTCTGCATGCTGCCGATCTCGTTGCCAC
Found at i:28234752 original size:26 final size:26
Alignment explanation
Indices: 28234723--28234778 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
28234713 CCGGTCTGAT
28234723 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
28234749 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28234775 CTTA
1 CTTA
28234779 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28235128 original size:26 final size:26
Alignment explanation
Indices: 28235090--28235144 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
28235080 CCAGTCCGAT
*
28235090 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28235116 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28235142 CTT
1 CTT
28235145 GAGGCAACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28235471 original size:159 final size:158
Alignment explanation
Indices: 28235115--28235523 Score: 397
Period size: 159 Copynumber: 2.6 Consensus size: 158
28235105 AACTCTGTAT
* * * * * *
28235115 GCTTAGACATGGAATGAACTCCGTATGCTTGAGGCAACCCATGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * ** * *
28235180 CCAGCCGGAGAGGCAGAATGCATAAGTCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTTGATCT
66 CCAGCCGGAAAGGCAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* * * * **
28235245 TACTGCCGCAACCCTCGGTCTGGTCTGA
131 CACTACCACAACCCTCGATCCAGTCTGA
* * ** * *
28235273 TCTTAGACAGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
** * * * *
28235338 CTGGCTGGAAAGGCATAATGCATAAGCCGGGGATCGACCCGATCCCTCTCTACGTGTTGTCGATC
66 CCAGCCGGAAAGGCAGAATGCATAAGCCGGGGATCGACCCGATCCC-CCCTACGTGCTGTCGATC
* *
28235403 CCGCTACCACAACCCTCGATCCAG-CTGGG
130 CCACTACCACAACCCTCGATCCAGTCT-GA
* * * * *
28235432 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGTGTGCGGGCACTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * *
28235497 CCGGGCAGAGAGGCAGAATGCACAAGC
66 CCAGCCGGAAAGGCAGAATGCATAAGC
28235524 TAGGGATAGG
Statistics
Matches: 198, Mismatches: 51, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
158 94 0.47
159 104 0.53
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
CCAGCCGGAAAGGCAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
CACTACCACAACCCTCGATCCAGTCTGA
Found at i:28235746 original size:184 final size:184
Alignment explanation
Indices: 28235432--28235791 Score: 422
Period size: 184 Copynumber: 2.0 Consensus size: 184
28235422 TCCAGCTGGG
* * * * *
28235432 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGTGTGCGGGCACTCGG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACACAG
* * * *
28235497 CCGGGCAGAGAGGCAGAATGCACAAGCTAGGGATAGGCCTGGGCCCCCCTGCATTCTGCCGATCC
66 CCGGGCAGAGAGGCAGAATGCACAAGCCAGGGATAGACCTGGGCCCCCCTGCATGCTACCGATCC
*
28235562 TACTG-TCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCATAT
131 TACTGCT-GCAACCCTCAGT-CGAGTCCGATCTTAGACTGGGAATGAACTCCATAT
** * *
28235616 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACACAG
* * * * * * * *
28235681 CCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCA-A-CTCGGTCCCTCCTGCGTGCTATCGAT
66 CCGGGCAGAGAGGCAGAATGCACAAGCCAGGGAT-AGACCT-GGGCCCCCCTGCATGCTACCGAT
* * * *
28235744 CCTGCTGCTGCAACCCTCAGTCTAGTTCGATTTTAGACTGGGAATGAA
129 CCTACTGCTGCAACCCTCAGTCGAGTCCGATCTTAGACTGGGAATGAA
28235792 GTCTGTATGC
Statistics
Matches: 146, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
183 4 0.03
184 140 0.96
185 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACACAG
CCGGGCAGAGAGGCAGAATGCACAAGCCAGGGATAGACCTGGGCCCCCCTGCATGCTACCGATCC
TACTGCTGCAACCCTCAGTCGAGTCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:28235859 original size:501 final size:501
Alignment explanation
Indices: 28234881--28236136 Score: 1304
Period size: 501 Copynumber: 2.5 Consensus size: 501
28234871 ATAGATCCCA
* * * * * ***
28234881 CTGTCGATCCTGCTGCCACAACCTTCGGCTCGA-CTGGGGCTTAGACATGGAATGAACTTTGTAT
1 CTGTCGATCCCGCTACCACAACCCTC-GATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * ** * *
28234945 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAA-CCGATCGGAGAGGCAGAATGTACAA
65 GCCTAAGCCAACCCACGAAAAGGGCGTGCGGGCAC-TAAGCCGGCCAGAGAGGCAGAATGCACAA
* * * * * ** * *
28235009 G-TCGAGGATCGGCCTAATCCCCCCTGCATGCTGTCGATCCTGCTGCTGGTCCTGCTACCGTAAC
129 GCT-AAGGATAGGCCTGAGCCCCACTGCATGCTACCGA-AC--CTACT-G---T-C-A-C--AAC
* **
28235073 CTTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCC
181 CCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCC
* * * * * *
28235137 GTATGCTTGAGGCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCA
245 GTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCACAGCCAGCCGGAGAGGCAGAATGCA
* * * ** * * * * *
28235202 TAAGTCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTTGATCTTACTGCCGCAACCCTCGGTCTG
310 CAAGCCAGGGATCAACCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCAGTCTG
* *
28235267 GTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCGGGC
375 GTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
28235332 GCTGAGCTGGCTGGAAAGGCATAATGCATAAGCCGGGGATCGACCCGATCCCTCTCTACGTG
440 ACTGAGCAGGCTGGAAAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTG
*
28235394 TTGTCGATCCCGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGATCCCGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
* * ** *
28235459 CCTAAGCCAACCCATGAAAAGGGTGTGCGGGCACTCGGCCGGGCAGAGAGGCAGAATGCACAAGC
66 CCTAAGCCAACCCACGAAAAGGGCGTGCGGGCACTAAGCCGGCCAGAGAGGCAGAATGCACAAGC
* * * * * * *
28235524 TAGGGATAGGCCTGGGCCCCCCTGCATTCTGCCGATCCTACTGTCGCAACCCTCGGTCCGATCCG
131 TAAGGATAGGCCTGAGCCCCACTGCATGCTACCGAACCTACTGTCACAACCCTCGGTCCGATCCG
*
28235589 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
196 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
28235654 CCACGAAACGAGCGTGCGGGCGCACAGCCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAAC
261 CCACGAAACAAGCGTGCGGGCGCACAGCCAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAAC
* * * * * * *
28235719 TCGGTCCCTCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCAGTCTAGT-TCGATTTTAGACT
326 CCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACA
* * * * * *
28235783 GGGAATGAAGTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGCCAGTC-GG
390 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG-CAGGCTGG
* * * * * **
28235847 AGAGGTATAATGCGCAAGCCGAGGATCGACTCGGTCCCCCTCTGTGTG
454 AAAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTG
* * ** * ** *
28235895 CTGTCGGTCCCGCTGCTGCAACCCTCGGTCTGGCTGGGGCTTAGACATGTAATGAACTCCCTATG
1 CTGTCGATCCCGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
* ** * * **
28235960 CCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTAAGCTGGCCGGAGAGGCAGAATGCGTAAGC
66 CCTAAGCCAACCCACGAAAAGGGCGTGCGGGCACTAAGCCGGCCAGAGAGGCAGAATGCACAAGC
* * * * * *
28236025 TAAGGATCGGCCTGATCCCCACTGCGTGCTACCGAACCTTCTGTCATAACCCTCGATCCGATCCG
131 TAAGGATAGGCCTGAGCCCCACTGCATGCTACCGAACCTACTGTCACAACCCTCGGTCCGATCCG
*
28236090 ATCTTAGACT-GGAATGAACTCCATATTCTTAGAC-TGGAATGAACTCC
196 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCC
28236137 ATATTCTTAG
Statistics
Matches: 619, Mismatches: 118, Indels: 26
0.81 0.15 0.03
Matches are distributed among these distances:
499 12 0.02
500 24 0.04
501 436 0.70
502 4 0.01
503 1 0.00
505 1 0.00
506 1 0.00
509 1 0.00
510 4 0.01
512 6 0.01
513 128 0.21
514 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (501 bp):
CTGTCGATCCCGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAAAGGGCGTGCGGGCACTAAGCCGGCCAGAGAGGCAGAATGCACAAGC
TAAGGATAGGCCTGAGCCCCACTGCATGCTACCGAACCTACTGTCACAACCCTCGGTCCGATCCG
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACAAGCGTGCGGGCGCACAGCCAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAAC
CCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACAG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCAGGCTGGAA
AGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTG
Found at i:28235977 original size:159 final size:158
Alignment explanation
Indices: 28235616--28235990 Score: 457
Period size: 158 Copynumber: 2.4 Consensus size: 158
28235606 AACTCCATAT
*
28235616 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACACAG
* *
28235681 CCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTCGGTCCCTCCTGCGTGCTATCGATCC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTCGGTCCCCCCTGCGTGCTATCGATCC
* *
28235746 TGCTGCTGCAACCCTCAGTCTAGTTCGA
131 CGCTGCTGCAACCCTCAGTCTAGCTCGA
** * * * * ***
28235774 TTTTAGAC-TGGGAATGAAGTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACACA
* * * * * *
28235838 GCCAGTCGGAGAGGTATAATGCGCAAGCC-GAGGATCGACTCGGTCCCCCTCTGTGTGCTGTCGG
65 GCCAGTCGGAGAGGCAGAATGCGCAAGCCAG-GGATCAACTCGGTCCCCC-CTGCGTGCTATCGA
* * * *
28235902 TCCCGCTGCTGCAACCCTCGGTCTGGCTGGG
128 TCCCGCTGCTGCAACCCTCAGTCTAGCTCGA
* ** *
28235933 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
28235991 TGCTAAGCTG
Statistics
Matches: 179, Mismatches: 34, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
157 2 0.01
158 94 0.53
159 82 0.46
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACACAG
CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTCGGTCCCCCCTGCGTGCTATCGATCC
CGCTGCTGCAACCCTCAGTCTAGCTCGA
Found at i:28236007 original size:159 final size:156
Alignment explanation
Indices: 28235616--28236055 Score: 463
Period size: 159 Copynumber: 2.8 Consensus size: 156
28235606 AACTCCATAT
28235616 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-ACA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTA-A
* *
28235680 GCCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTCGGTCCCTCCTGCGTGCTATCGATC
65 G-CTGTCGGAGAGGCAGAATGCGCAAGCCA-GGATCGACTCGGTCCCCCCTGCGTGCTATCGATC
* *
28235745 CTGCTGCTGCAACCCTCAGTCTAGTTCGA
128 CCGCTGCTGCAACCCTCAGTCTAGCTCGA
** * * * * ** *
28235774 TTTTAGAC-TGGGAATGAAGTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
* * * * * *
28235838 GCCAGTCGGAGAGGTATAATGCGCAAGCCGAGGATCGACTCGGTCCCCCTCTGTGTGCTGTCGGT
65 G-CTGTCGGAGAGGCAGAATGCGCAAGCC-AGGATCGACTCGGTCCCCC-CTGCGTGCTATCGAT
* * * *
28235903 CCCGCTGCTGCAACCCTCGGTCTGGCTGGG
127 CCCGCTGCTGCAACCCTCAGTCTAGCTCGA
* ** * *
28235933 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTAAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * *
28235998 CTGGCCGGAGAGGCAGAATGCGTAAGCTAAGGATCGGC-CTGATCCCCACTGCGTGCTA
66 CT-GTCGGAGAGGCAGAATGCGCAAGC-CAGGATCGACTC-GGTCCCCCCTGCGTGCTA
28236056 CCGAACCTTC
Statistics
Matches: 226, Mismatches: 48, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 104 0.46
159 120 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CTGTCGGAGAGGCAGAATGCGCAAGCCAGGATCGACTCGGTCCCCCCTGCGTGCTATCGATCCCG
CTGCTGCAACCCTCAGTCTAGCTCGA
Found at i:28236125 original size:25 final size:25
Alignment explanation
Indices: 28236091--28236160 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
28236081 TCCGATCCGA
28236091 TCTTAGACTGGAATGAACTCCATAT
1 TCTTAGACTGGAATGAACTCCATAT
28236116 TCTTAGACTGGAATGAACTCCATAT
1 TCTTAGACTGGAATGAACTCCATAT
*
28236141 TCTTAGACTGGGGATGAACT
1 TCTTAGACT-GGAATGAACT
28236161 TCGTATGCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 34 0.79
26 9 0.21
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (25 bp):
TCTTAGACTGGAATGAACTCCATAT
Found at i:28236693 original size:26 final size:26
Alignment explanation
Indices: 28236642--28236694 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28236632 CCGATCTGAT
**
28236642 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
28236668 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
28236694 C
1 C
28236695 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28237689 original size:26 final size:26
Alignment explanation
Indices: 28237660--28237712 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28237650 CTGGTCTGAA
*
28237660 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
*
28237686 CTTAGACATGGAATGAACACTGTATG
1 CTTAGACATGGAATGAACACCGTATG
28237712 C
1 C
28237713 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:28237903 original size:296 final size:298
Alignment explanation
Indices: 28237362--28237946 Score: 673
Period size: 296 Copynumber: 2.0 Consensus size: 298
28237352 GGCTCAAACT
* *
28237362 CTTAGACTAGGAATGAACTCTGTATGCTGTAGACATGGAACAAACTTCGTATGCCTAAGCTAACC
1 CTTAGACTAGGAATGAACTCCGTATGCTGTAGACATGGAACAAACTTCGTATGCCTAAGCCAACC
* ** * *
28237427 CACTAAACAAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAAAATGCCCAAGCCAGGGATCGAAT
66 CACAAAACAAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAAAATGCCCAAGCCAGGGATCGAAC
* * ****
28237492 CGATTCCCCTCTACGTGCTGCTGATCCCACTACCACAACCCTCAGTTCGGTTGGGGCTTAGACAT
131 CGATGCCCCTCTACGTGCTGCTGATCCCACTACCACAACCCTCAGTTCGATCCAAGCTTAGACAT
* * * *
28237557 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCGCTCAACC-GACCGGA
196 GGAATGAACTCCCTATGCCAAAGCCAACCCATGAAAGAAGCATGCGGGCGCTCAACCTG-CCGGA
* *
28237621 GAGGCAGAATGCATAAGCCGGGGATCGGCCTGGTCTGAA
260 GAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCTGAA
* *
28237660 CTTAGACTGGGAATGAACTCCGTATGCT-TAGACATGGAATGAACAC-T-GTATGCCTAAGCCAA
1 CTTAGACTAGGAATGAACTCCGTATGCTGTAGACATGGAA-CAA-ACTTCGTATGCCTAAGCCAA
* * * * *
28237722 CCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCTAGGGA-CTG
64 CCCACAAAACAAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAAAATGCCCAAGCCAGGGATC-G
* * *** ** *
28237786 ACCCGATGCCCC-CTACGTGCTGTTGATCTTGCTACTGCAACCCTCAG-TCTGATCCAATCTTAG
128 AACCGATGCCCCTCTACGTGCTGCTGATCCCACTACCACAACCCTCAGTTC-GATCCAAGCTTAG
* * * * * *
28237849 AC-TGGGAATGAACTTCGTATGCCAAAGTCAACCCATGAAAGAAGCATTCGGGCGCTGAGCCTGC
192 ACAT-GGAATGAACTCCCTATGCCAAAGCCAACCCATGAAAGAAGCATGCGGGCGCTCAACCTGC
* **
28237913 CGGAGAGGCATAATGTGCAAGCCAGGGATCGGCC
256 CGGAGAGGCAGAATGCACAAGCCAGGGATCGGCC
28237947 CAGTCCCCCT
Statistics
Matches: 238, Mismatches: 43, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
295 3 0.01
296 116 0.49
297 88 0.37
298 29 0.12
299 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.19
Consensus pattern (298 bp):
CTTAGACTAGGAATGAACTCCGTATGCTGTAGACATGGAACAAACTTCGTATGCCTAAGCCAACC
CACAAAACAAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAAAATGCCCAAGCCAGGGATCGAAC
CGATGCCCCTCTACGTGCTGCTGATCCCACTACCACAACCCTCAGTTCGATCCAAGCTTAGACAT
GGAATGAACTCCCTATGCCAAAGCCAACCCATGAAAGAAGCATGCGGGCGCTCAACCTGCCGGAG
AGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCTGAA
Found at i:28238029 original size:159 final size:158
Alignment explanation
Indices: 28237844--28238129 Score: 364
Period size: 159 Copynumber: 1.8 Consensus size: 158
28237834 CTGATCCAAT
* * * *
28237844 CTTAGACTGGGAATGAACTTCGTATGCCAAAG-TCAACCCATGAAA-GAAGCATTCGGGCGCTGA
1 CTTAGACTGGGAATGAACTCCCTATGCCAAAGCT-AACCCATGAAACG-AGCATGCGGGCGCTCA
* * *
28237907 GCCTGCCGGAGAGGCATAATGTGCAAGCCAGGGATCGGCCC-AGTCCCCCTCTGCGTGCTGCCGA
64 GCCAGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGA-TCCCCC-CTGCGTGCTACCGA
28237971 TTCCGCTACCACAACCTTCAGTTCGGCTGGGG
127 TTCCGCTACCACAACCTTCAGTTCGGCTGGGG
* * * *
28238003 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCAAAGCTAACCCATGAAACGAGCATGCGGGCGCTCAG
* ***
28238067 CCAGTCGGAGAGGCAGAATGTGCAAGTTGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGAT
65 CCAGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGAT
28238130 ACTGCTGTCG
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
158 14 0.13
159 90 0.83
160 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCAAAGCTAACCCATGAAACGAGCATGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATTCC
GCTACCACAACCTTCAGTTCGGCTGGGG
Found at i:28238724 original size:159 final size:158
Alignment explanation
Indices: 28238343--28238731 Score: 413
Period size: 158 Copynumber: 2.5 Consensus size: 158
28238333 ACCGGTCCTA
* *
28238343 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
* * ** *
28238408 CATGAAACGAGCGTGCAGGCACTCAGCCGGCTGGAGAGGCAAAATGCGCAAGCTGTGGATCGACC
66 CATGAAACAAGCATGCAGGCACTCAGCCGGCCAGAGAGGCAAAATGCACAAGCTGTGGATCGACC
**
28238473 CAGTCCCCCTTGCGTGCTATCGATCTTG
131 CAGTCCCCCTTGCGTGCTATCGATCCCG
** ** ** * * ** *
28238501 CTATCGTAACCCTCGATGTGGTTTGATCTTAGAC-TGGAAATGAACTTCGTATGCCTAAGTCAAC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGG-AATGAACTTCGTATGCCTAAGCCAAC
* * ** * * * *
28238565 CCATGAAACAAGCATTCGGGTGCTGAGCCTGCCAGAGAGGCATAATGCACCAGCTAG-GGATCGA
65 CCATGAAACAAGCATGCAGGCACTCAGCCGGCCAGAGAGGCAAAATGCACAAGCT-GTGGATCGA
* * *
28238629 CCTAGTCCCCCTCTGTGTGCTATCGGTCCCG
129 CCCAGTCCCCCT-TGCGTGCTATCGATCCCG
* * * *
28238660 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATTGAGTGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
*
28238725 CACGAAA
66 CATGAAA
28238732 TGGGCGTGCA
Statistics
Matches: 180, Mismatches: 47, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
157 3 0.02
158 107 0.59
159 68 0.38
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (158 bp):
CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
CATGAAACAAGCATGCAGGCACTCAGCCGGCCAGAGAGGCAAAATGCACAAGCTGTGGATCGACC
CAGTCCCCCTTGCGTGCTATCGATCCCG
Found at i:28238746 original size:159 final size:157
Alignment explanation
Indices: 28238343--28238807 Score: 455
Period size: 159 Copynumber: 2.9 Consensus size: 157
28238333 ACCGGTCCTA
* *
28238343 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
** * **
28238408 CATGAAACGAGCGTGCAGGCACTCAGCCGGCTGGAGAGGCAAAATGCGCAAGCTGTGGATCGACC
66 CATGAAACGAGCGTGCAGGTGCTCAGCCAGCCAGAGAGGCAAAATGCGCAAGCTG-GGATCGACC
* **
28238473 CAGTCCCCCTTGCGTGCTATCGATCTTG
130 TAGTCCCCCTTGCGTGCTATCGATCCCG
** ** ** * * ** *
28238501 CTATCGTAACCCTCGATGTGGTTTGATCTTAGAC-TGGAAATGAACTTCGTATGCCTAAGTCAAC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGG-AATGAACTTCGTATGCCTAAGCCAAC
* * * * * * * * *
28238565 CCATGAAACAAGCATTCGGGTGCTGAGCCTGCCAGAGAGGCATAATGCACCAGCTAGGGATCGAC
65 CCATGAAACGAGCGTGCAGGTGCTCAGCCAGCCAGAGAGGCAAAATGCGCAAGCT-GGGATCGAC
* *
28238630 CTAGTCCCCCTCTGTGTGCTATCGGTCCCG
129 CTAGTCCCCCT-TGCGTGCTATCGATCCCG
* * * *
28238660 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATTGAGTGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
* * * * * * * *
28238725 CACGAAATGGGCGTGCAGGTGCTTAGCCAGCCAAAGAGGTAGAATGCGCAAGCCGGGGATCGACC
66 CATGAAACGAGCGTGCAGGTGCTCAGCCAGCCAGAGAGGCAAAATGCGCAAG-CTGGGATCGACC
* * *
28238790 TTGTCCCCCCTGCATGCT
130 TAGTCCCCCTTGCGTGCT
28238808 GCCGATCCTA
Statistics
Matches: 237, Mismatches: 65, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
157 3 0.01
158 113 0.48
159 118 0.50
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
CATGAAACGAGCGTGCAGGTGCTCAGCCAGCCAGAGAGGCAAAATGCGCAAGCTGGGATCGACCT
AGTCCCCCTTGCGTGCTATCGATCCCG
Found at i:28238886 original size:26 final size:26
Alignment explanation
Indices: 28238857--28238909 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28238847 CCGATCCGAT
28238857 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28238883 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28238909 C
1 C
28238910 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28239225 original size:159 final size:157
Alignment explanation
Indices: 28238883--28239226 Score: 400
Period size: 158 Copynumber: 2.2 Consensus size: 157
28238873 ACTCCGTATG
* * * * *
28238883 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAAT
1 CTTAGAC-TGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAAC
* * * * * *
28238948 CGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGGTCCCTTCTGCATGTTGTCAATCCT
65 CGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCTCTACATGCTGTCAATCCT
* * *
28239013 GTTGCCGCAACCCTCGGTTTGGTCTGAT
130 GCTGCCGCAACCCTCAGTTCGGTCTGAT
* * * * *
28239041 CTTAAACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAAC
* * * * * ** *
28239106 CGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCGGTCCGATCCCCCTCTACATGCTGTCGATCC
65 CGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCTCTACATGCTGTCAATCC
28239171 TGCTGCCGCAACCCTCAGTTCGGTCTGAT
129 TGCTGCCGCAACCCTCAGTTCGGTCTGAT
*
28239200 CTTAGACTGGGAATGAACTTTGTATGC
1 CTTAGACT-GGAATGAACTTCGTATGC
28239227 TTAGACTGGG
Statistics
Matches: 154, Mismatches: 30, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 85 0.55
159 68 0.44
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAACC
GACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCTCTACATGCTGTCAATCCTG
CTGCCGCAACCCTCAGTTCGGTCTGAT
Found at i:28239250 original size:26 final size:26
Alignment explanation
Indices: 28239200--28239252 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28239190 TCGGTCTGAT
**
28239200 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28239226 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28239252 C
1 C
28239253 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28239952 original size:26 final size:26
Alignment explanation
Indices: 28239923--28239975 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28239913 GGCTCAAAAT
* *
28239923 CTTAGAC-TGTGAATGAACTCCGTATG
1 CTTAGACATG-GAATAAACTCCATATG
28239949 CTTAGACATGGAATAAACTCCATATG
1 CTTAGACATGGAATAAACTCCATATG
28239975 C
1 C
28239976 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:28240466 original size:26 final size:26
Alignment explanation
Indices: 28240425--28240477 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28240415 CTAGTCTGAT
28240425 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
*
28240451 CTTAGAC-TGGAGATGAACTCTGTATG
1 CTTAGACTTGGA-ATGAACTCCGTATG
28240477 C
1 C
28240478 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:28240843 original size:26 final size:26
Alignment explanation
Indices: 28240805--28240857 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28240795 CTGGTTCAAT
28240805 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28240831 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28240857 C
1 C
28240858 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28249160 original size:26 final size:26
Alignment explanation
Indices: 28249110--28249162 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28249100 GCTCAAAAAT
28249110 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28249136 CTTAGACATGGGAATGAACTC-GTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
28249162 C
1 C
28249163 CCTAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28250352 original size:26 final size:26
Alignment explanation
Indices: 28250316--28250368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28250306 TTGGTCCAAT
28250316 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28250342 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28250368 C
1 C
28250369 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28250920 original size:40 final size:41
Alignment explanation
Indices: 28250836--28250947 Score: 208
Period size: 42 Copynumber: 2.7 Consensus size: 41
28250826 GATCCCCCTT
28250836 AAAAAAAAATGAAATACAATAAATACAATATAGGAGGTAAAA
1 AAAAAAAAATGAAATACAATAAATACAATATAGGAGGT-AAA
28250878 AAAAAAAAATGAAATACAATAAATACAATATAGGAGGT-AA
1 AAAAAAAAATGAAATACAATAAATACAATATAGGAGGTAAA
28250918 AAAAAAAAATGAAATACAATAAATACAATA
1 AAAAAAAAATGAAATACAATAAATACAATA
28250948 AGAATATAGG
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
40 32 0.46
42 38 0.54
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (41 bp):
AAAAAAAAATGAAATACAATAAATACAATATAGGAGGTAAA
Found at i:28251670 original size:26 final size:26
Alignment explanation
Indices: 28251641--28251693 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28251631 CCGATCCGAT
*
28251641 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCATATG
28251667 CTTAGACTGGAGATGAACTCCATATG
1 CTTAGACTGGAGATGAACTCCATATG
28251693 C
1 C
28251694 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCATATG
Found at i:28252689 original size:158 final size:158
Alignment explanation
Indices: 28252389--28252672 Score: 414
Period size: 158 Copynumber: 1.8 Consensus size: 158
28252379 AACTTTGTAT
* * *
28252389 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
28252454 CTGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTCTGCGTGCTGTCGGCC
66 CCGACCGGAGAGGCAGAATACACAAGCCGGGGATCGGCCAGATCCCTCCCTGCGTGCTGCCGGCC
28252519 CACTGCCACAACCTTCGGTCTGGCTGGG
131 CACTGCCACAACCTTCGGTCTGGCTGGG
*
28252547 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAAACCCACGAAAC-AGGCGTGCAGGCGCTT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAA-CCACGAAACGA-GCGTGCAGGCGCTC
*
28252610 AGCCGACCGGAGAGGCAGAATACACAAGTCGGGGATCGGCCTAG-TCCC-CCCTGCGTGCTGCCG
64 AGCCGACCGGAGAGGCAGAATACACAAGCCGGGGATCGGCC-AGATCCCTCCCTGCGTGCTGCCG
28252673 ATCCTGCTGT
Statistics
Matches: 112, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
157 18 0.16
158 93 0.83
159 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.30, T:0.16
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATACACAAGCCGGGGATCGGCCAGATCCCTCCCTGCGTGCTGCCGGCC
CACTGCCACAACCTTCGGTCTGGCTGGG
Found at i:28252757 original size:26 final size:26
Alignment explanation
Indices: 28252706--28252758 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28252696 TCGGTTTGAT
*
28252706 CTTAGACTAGGAATGAACCCTGTATG
1 CTTAGACTAGGAATGAACCCTATATG
* *
28252732 CTTAGACTGGGGATGAACTCC-ATATG
1 CTTAGACTAGGAATGAAC-CCTATATG
28252758 C
1 C
28252759 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCTATATG
Found at i:28253124 original size:26 final size:26
Alignment explanation
Indices: 28253086--28253138 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28253076 TCGGTTCGAT
28253086 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28253112 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
28253138 C
1 C
28253139 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28253590 original size:158 final size:157
Alignment explanation
Indices: 28253112--28253613 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 157
28253102 ACTCCGTATG
* * * *
28253112 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGTAGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCAGGCGCTCAGC
* * * * * * *
28253177 CAG-TCGAAAAGGCAGAATG-AGAAATCCAGGGATCGACCCGGTCCCACATGTGTGCTATCGATC
66 CAGCT-GAAGAGGCAGAATGCA-AAAGCCGGGGATCGGCCCGATCCC-CTTGTGTGCTGTCGATC
* ** * * *
28253240 CTAGTGTCGCAACCCTCGGTCCGATCTAAT
128 CTACTACCGCAACCCTCAGTCCGGTCTGAT
* * *
28253270 CTTAGAC-TGAGAATGAACTTCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCAGGCGCTCAG
* * * * ** *
28253334 CACGGCCGTAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTTTGTGTGCTG-CGGT
65 C-CAGCTGAAGAGGCAGAATGCAAAAGCCGGGGATCGGCCCGAT-CCCC-TTGTGTGCTGTCGAT
** * * * **
28253398 CCCGCTACCACAACCCTCAATTCGG-CTGGG
127 CCTACTACCGCAACCCTCAGTCCGGTCTGAT
* ** * * *
28253428 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCAGGCGCTCAGC
* *
28253493 CAGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCACCCTTGTGTGCTGTCGATCCT
66 CAGCTGAAGAGGCAGAATGCAAAAGCCGGGGATCGGCCCGATC-CCCTTGTGTGCTGTCGATCCT
* *
28253558 ACTACCGCAACCGTCAGTCCGGTTTGAT
130 ACTACCGCAACCCTCAGTCCGGTCTGAT
* * *
28253586 CTTAGACAGGGGAATGAGCTCTGTATGC
1 CTTAGACA-TGGAATGAACTCCGTATGC
28253614 TTAGACCGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 11 0.04
157 63 0.23
158 120 0.44
159 65 0.24
160 11 0.04
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCAGGCGCTCAGC
CAGCTGAAGAGGCAGAATGCAAAAGCCGGGGATCGGCCCGATCCCCTTGTGTGCTGTCGATCCTA
CTACCGCAACCCTCAGTCCGGTCTGAT
Found at i:28253635 original size:26 final size:27
Alignment explanation
Indices: 28253586--28253639 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
28253576 CCGGTTTGAT
*
28253586 CTTAGACAGGGGAATGAGCTCTGTATG
1 CTTAGACAGGGGAATGAACTCTGTATG
*
28253613 CTTAGACCGGGG-ATGAACTCTGTATG
1 CTTAGACAGGGGAATGAACTCTGTATG
28253639 C
1 C
28253640 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (27 bp):
CTTAGACAGGGGAATGAACTCTGTATG
Found at i:28254337 original size:26 final size:26
Alignment explanation
Indices: 28254308--28254357 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
28254298 GGCTCAAAAT
*
28254308 CTTAGAC-TGTGAATTAACTCCGTACG
1 CTTAGACATG-GAATGAACTCCGTACG
28254334 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
28254358 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:28254759 original size:159 final size:158
Alignment explanation
Indices: 28254333--28254779 Score: 454
Period size: 159 Copynumber: 2.8 Consensus size: 158
28254323 AACTCCGTAC
* * * *
28254333 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACAAAACGAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* ** * * * * *
28254398 CCGATCGGAGAGGCAGAATGCGCAAGGTGGGGATCAACCCAGTCCCCCCTACGTGTTATTGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC
* *
28254463 TGCTACCACAACCCTCGGTCCTATCCGA
131 CGCTACCACAACCCTCAGTCCTATCCGA
* * * * * *
28254491 TCTTAGAC-TGGGAATGAACTCCGTATACATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
* * * * * * * *
28254555 GCCG-GCGGAGGAGGCATAATGCCCAAGCCAGGGATCCGCCCGGTCCTCCTCTGCGTGCTGTCGG
65 GCCGACCGGA-GAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCC-CCCCTGCGTGCTATCGA
* * * *
28254619 TCCCGCTACCACAATCCTTAGT-CTGA-CTGGG
128 TCCCGCTACCACAACCCTCAGTCCT-ATC-CGA
* *
28254650 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * *
28254715 TCGACCGGAGAGGCAGATTGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCT-TCTGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATC-GATC
28254779 C
130 C
28254780 TGCTGCCGTA
Statistics
Matches: 231, Mismatches: 50, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 7 0.03
158 102 0.44
159 117 0.51
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC
CGCTACCACAACCCTCAGTCCTATCCGA
Found at i:28255609 original size:159 final size:157
Alignment explanation
Indices: 28255204--28255615 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 157
28255194 CTCTGTATGG
* * *
28255204 TTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGTGCTCAGCC
1 TTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
* * * * ***
28255269 GACCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCCTACGTGCTGTCGATCTTGC
66 GACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCTACGTGCTGCCGATCCCAC
* * *
28255334 TACCACAACCCTCGGTCTGGTCCGATC
131 TACCACAACCCTCGGTCAGCTCCGAGC
** * * * * * * *
28255361 TTAGACAACGAATCAACTTCGTATGCCT-AGATCAACTCATGAAACAAGCGTACGAGTGCTGAGC
1 TTAGACATGGAATCAACTCCGTATGCCTAAG-CCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * * *
28255425 TGGCCTGAGAGGCATAATGCACAAGCCGGGGAGCGACCCGATCCCCCTCTGCGTGCTGCCGGTCC
65 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGAT-CCCC-CTACGTGCTGCCGATCC
* * *
28255490 CACTGCCACAACCCTCGGTCCAGCT-GGGGC
128 CACTACCACAACCCTCGGT-CAGCTCCGAGC
* * * *
28255520 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCATCC
1 TTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
* * *
28255585 GACCAGAGAGGCAGGATGGGCAAGCCAGGGA
66 GACCAGAGAGGCAGAATGCGCAAGCCGGGGA
28255616 TCGAACGGGT
Statistics
Matches: 197, Mismatches: 53, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
156 2 0.01
157 83 0.42
158 4 0.02
159 103 0.52
160 5 0.03
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
TTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
GACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCTACGTGCTGCCGATCCCAC
TACCACAACCCTCGGTCAGCTCCGAGC
Found at i:28256732 original size:26 final size:26
Alignment explanation
Indices: 28256703--28256755 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28256693 CCGGTTCGAT
28256703 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
28256729 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
28256755 C
1 C
28256756 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:28257449 original size:26 final size:26
Alignment explanation
Indices: 28257411--28257489 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
28257401 CCGGTTCGAT
* **
28257411 CTTAGAC-TGGGAACGAACTCTGAATG
1 CTTAGACAT-GGAACAAACTCCAAATG
*
28257437 CTTAGACATGGAATAAACTCCAAATG
1 CTTAGACATGGAACAAACTCCAAATG
*
28257463 CTTAGACATGGAATAAACTCCAAATG
1 CTTAGACATGGAACAAACTCCAAATG
28257489 C
1 C
28257490 CTAGTGCCCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (26 bp):
CTTAGACATGGAACAAACTCCAAATG
Found at i:28257906 original size:25 final size:26
Alignment explanation
Indices: 28257878--28257929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28257868 CTGGTCCAAT
*
28257878 CTTAGAC-TAGAATGAACTCTGTATG
1 CTTAGACATAGAATGAACTCCGTATG
*
28257903 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
28257929 C
1 C
28257930 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:28258427 original size:25 final size:26
Alignment explanation
Indices: 28258377--28258428 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
28258367 CTGATCCGAT
28258377 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28258403 CTTAGATTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28258428 C
1 C
28258429 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.