Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 299 of 402
Found at i:28259656 original size:158 final size:155
Alignment explanation
Indices: 28259154--28259653 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 155
28259144 ACTCTGTATG
* * * *
28259154 CTTAGAC-ATGGAATGAACTTCATATGCCTAAGCGAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
28259218 CCGAT-GGAGAGGCAGAATCCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCATGCTGTCGATCT
65 TCGATCGGAGAGGCAGAATGCGCAAGCC-GGGATTGGCCCCGTCCCCTCTGCGTGCTGTCGATCT
* *
28259282 TGCTTTCGCAACCCTCGGTCTGGTCC-AAT
129 TG-TTTCGCAACCCTC-TTCTGG-CCTGAT
* * * *
28259311 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTC-GGCGTTGAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * ** ** ** * *
28259375 CTATCGAAGAGACATAATGCGCAAGCCGGGGCTCACCCCGATCCCCTTCTGCGTGCTACCGGTCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGATTGGCCCCG-TCCCC-TCTGCGTGCTGTCGATCT
** * * **
28259440 TGCTACCACAACCTTCGGTTC-GG-CTGGGG
129 TG-TTTCGCAACCCTC--TTCTGGCCT-GAT
* * **
28259469 CTTAGAC-ATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGAGTATGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
28259533 TCGATCGGAGAGGCAGAATGCGCAAGCCTGGGATTGGCCCTGTCCCCTCTACGTGCTGTCGATCT
65 TCGATCGGAGAGGCAGAATGCGCAAGCC-GGGATTGGCCCCGTCCCCTCTGCGTGCTGTCGATCT
28259598 TGTTGTCGCAACCCTCTATCTGGCCTGAT
129 TGTT-TCGCAACCCTCT-TCTGGCCTGAT
*
28259627 CTTAGGCTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
28259654 TTAGATTGGG
Statistics
Matches: 263, Mismatches: 65, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 17 0.06
157 74 0.28
158 122 0.46
159 42 0.16
160 8 0.03
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (155 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGATCGGAGAGGCAGAATGCGCAAGCCGGGATTGGCCCCGTCCCCTCTGCGTGCTGTCGATCTTG
TTTCGCAACCCTCTTCTGGCCTGAT
Found at i:28262699 original size:158 final size:157
Alignment explanation
Indices: 28262405--28263224 Score: 611
Period size: 158 Copynumber: 5.2 Consensus size: 157
28262395 GTGGCTCAAA
* * *
28262405 ATCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCA
1 ATCTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
** * * * * * **
28262470 GCCGGTCGGAGAAGCAGAATGCGTAAGCCAGGGATTGGCCCGATCCCCCCTGTATTTTGTCGATC
65 GCCAATCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCTCTGTATGCTGTCGATC
* * *
28262535 TTGCTGCCACAACCCTCAGTCCGATCCG
130 CTGCTGCCACAACCCTCGGTCCGATCGG
* * *
28262563 ATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 ATCTTAGATT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * ** *
28262628 GCCAATCGAAGAGGTATAATGCATAAG-CAGGGGATCGACCC-AGTCCCCTCTGTATGCTACCGG
65 GCCAATCGAAGAGGCAGAATGCGTAAGCCA-GGGATCGACCCGA-TCCCCTCTGTATGCTGTCGA
*
28262691 TCCCGCTGCCACAACCCTCGGTCCGA-CTGG
128 TCCTGCTGCCACAACCCTCGGTCCGATC-GG
** * * * * * * * *
28262721 GGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCA
1 ATCTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * * * * * *
28262786 GCC-AGCCAGAGAGGCAAAATGTGCAAGCTAGGGATC-AGCTCGAT-CCCTC-CTACGTGCTGTC
65 GCCAATCGA-AGAGGCAGAATGCGTAAGCCAGGGATCGA-CCCGATCCCCTCTGTA--TGCTGTC
* * * * *
28262847 GATCCTGATGTCTCAACCCTTGGTCCGATCTG
126 GATCCTGCTGCCACAACCCTCGGTCCGATCGG
* * * * * * *
28262879 ATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACAAAATGAGGGTGCGGGTGCTGA
1 ATCTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * * * * * * *
28262944 GCCGATCGAAGAGGCATAATGCGTAAGTCGGGGATC-AGCCCGATCCCCCTCCGTGTACTATCGG
65 GCCAATCGAAGAGGCAGAATGCGTAAGCCAGGGATCGA-CCCGAT-CCCCTCTGTATGCTGTCGA
* *
28263008 TCCCGCTGCCACAACCCTCGGTTCGA-CTGG
128 TCCTGCTGCCACAACCCTCGGTCCGATC-GG
** * * * * **
28263038 GGCTTAGACATT-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCACTC
1 ATCTTAG--ATTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTC
* * * * *
28263102 AGCCAACCGAAGAGGCAGAATACATAAGCCAGGGATCGGCCCGATCCCC-CT-TACGTGCTGCCG
64 AGCCAATCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCTCTGTA--TGCTGTCG
** * * * *
28263165 ATCCTGCTATCGCAACCCTCGATCCGGTCTG
127 ATCCTGCTGCCACAACCCTCGGTCCGATCGG
*
28263196 ATCTTAGACTTGGAATGAACTCCATATGC
1 ATCTTAGA-TTGGAATGAACTCCGTATGC
28263225 TTAGACTGGG
Statistics
Matches: 504, Mismatches: 133, Indels: 50
0.73 0.19 0.07
Matches are distributed among these distances:
156 4 0.01
157 17 0.03
158 358 0.71
159 117 0.23
160 6 0.01
161 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
ATCTTAGATTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCAATCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCTCTGTATGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGATCGG
Found at i:28263149 original size:317 final size:315
Alignment explanation
Indices: 28262407--28263224 Score: 1025
Period size: 316 Copynumber: 2.6 Consensus size: 315
28262397 GGCTCAAAAT
** * * *
28262407 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCA-TGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GGAGTGCGGGCGCTCAG
* * * * * *** ** *
28262471 CCGGTCGGAGAAGCAGAATGCGTAAGCCAGGGATTGGCCCGATCCCCCCTGTATTTTGTCGATCT
65 CCAGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGAT-CCCCCTACGTGCTGTCGATCC
* * * *
28262536 TGCTGCCACAACCCTCAGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCAA
129 TGCTGTCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* *
28262601 CCCACGAAATGAGCGTGCGGGTGCTGAGCCAATCGAAGAGGTATAATGCATAAGCAGGGGATCGA
194 CCCACAAAATGAGCGTGCGGGTGCTGAGCCAATCGAAGAGGCATAATGCATAAGCAGGGGATCGA
* *
28262666 CCCAGTCCCCTCTGTATGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGG
259 CCCAGTCCCCTCCGTATACTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGG
* * *
28262723 CTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAGC
* * * * * *
28262788 CAGCC-AGAGAGGCAAAATGTGCAAGCTAGGGATCAGCTCGATCCCTCCTACGTGCTGTCGATCC
66 CAGCCGA-AGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCC-CCTACGTGCTGTCGATCC
* * * *
28262852 TGATGTCTCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
129 TGCTGTCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * *
28262917 CCCACAAAATGAGGGTGCGGGTGCTGAGCCGATCGAAGAGGCATAATGCGTAAGTC-GGGGATC-
194 CCCACAAAATGAGCGTGCGGGTGCTGAGCCAATCGAAGAGGCATAATGCATAAG-CAGGGGATCG
* * *
28262980 AGCCC-GATCCCCCTCCGTGTACTATCGGTCCCGCTGCCACAACCCTCGGTTCGACTGGGG
258 A-CCCAG-T-CCCCTCCGTATACTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGG
* *
28263040 CTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAGC
* * * *
28263105 CAACCGAAGAGGCAGAATACATAAGCCAGGGATCGGCCCGATCCCCCTTACGTGCTGCCGATCCT
66 CAGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCC-TACGTGCTGTCGATCCT
* * * * * *
28263170 GCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTTGGAATGAACTCCATATGC
130 GCTGTCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
28263225 TTAGACTGGG
Statistics
Matches: 426, Mismatches: 67, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
315 6 0.01
316 216 0.51
317 203 0.48
318 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (315 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAGC
CAGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTACGTGCTGTCGATCCTG
CTGTCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
CACAAAATGAGCGTGCGGGTGCTGAGCCAATCGAAGAGGCATAATGCATAAGCAGGGGATCGACC
CAGTCCCCTCCGTATACTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGG
Found at i:28263239 original size:26 final size:26
Alignment explanation
Indices: 28263198--28263250 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28263188 CCGGTCTGAT
*
28263198 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28263224 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28263250 C
1 C
28263251 CTAAGTCCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28265159 original size:158 final size:158
Alignment explanation
Indices: 28264788--28265288 Score: 418
Period size: 158 Copynumber: 3.2 Consensus size: 158
28264778 GGCTCAAAAT
* * * *
28264788 CTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACAAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
*** * * * * * *
28264853 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CAACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCC
* *
28264918 GCTACCGCAACCCTCAGTCCGATCTGAT
131 GCTACCACAACCCTCAGTCCGATCTGAG
* * * * * * *
28264946 TTTAGAC-TGGGAATAAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
28265010 CCAACCGAAGAGGTATAATGCATAAG-CAGGGGATCGACCCGGTCCCCTCTGTGTGCTATCGGTC
65 CCAACCGAAGAGGCAGAATGCACAAGCCA-GGGATCGACCCGATCCCCCCTGCGTGCTATCGATC
* * *
28265074 CCGCTGCCACAACCCTCGGTCCGA-CTGGGG
129 CCGCTACCACAACCCTCAGTCCGATCT-GAG
* * * * *
28265104 CTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * ** * * * * * *
28265169 CGACCAGAA-AGACAGAATGTGCAAGCTAGGGATCGGCCCGGTCCCTCCTACGTGCTGTCGATCC
66 CAACC-GAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
* * ** * ** * *
28265233 TGATGTCTCAACCCTTGGTCCAATCTGAT
130 CGCTACCACAACCCTCAGTCCGATCTGAG
28265262 CTTAGAC-TGGTAATGAACTCCGTATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
28265289 TTAGACTGCG
Statistics
Matches: 266, Mismatches: 69, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 8 0.03
158 251 0.94
159 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CAACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCC
GCTACCACAACCCTCAGTCCGATCTGAG
Found at i:28265794 original size:26 final size:26
Alignment explanation
Indices: 28265758--28265810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28265748 CCGGTTTGAT
28265758 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28265784 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28265810 C
1 C
28265811 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28265877 original size:496 final size:499
Alignment explanation
Indices: 28264800--28265920 Score: 1557
Period size: 496 Copynumber: 2.3 Consensus size: 499
28264790 TAGACATGGA
* * ** **
28264800 ATGAACTCTGTATGCCTAAG-CTAACCCACAAAACGAACGTGCGGG-TGCTCAGCCGGTCGGAGA
1 ATGAACTCCGTATGCATAAGTC-AACCCATGAAATAAACGTGCGGGCT-CTCAGCCGGTCGGAGA
* * ** * * *
28264863 GGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCC-CTGCGTGCTGTCGATC-CTGCTACCGC
64 GGCATAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTCTGTGT-CTGTCGATCTC-GCTACCAC
28264926 AACCCTCAGTCCGATCTGATTTTAGACTGGGAATAAACTCCGTATGCATAAGTCAACCCACGAAA
127 AACCCTCA-TCCGATCTGATTTTAGACTGGGAATAAACTCCGTATGCATAAGTCAACCCACGAAA
* *
28264991 TGAGCATGCGGGTGCTGAGCCAACCGAAGAGGTATAATGCATAAGCAGGGGATCGACCCGGTCCC
191 TGAGCATGCGGGTGCTGAGCCAACCGAAGAGGTATAATGCATAAACAGGGGATCAACCCGGTCCC
28265056 CTCTGTGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAA
256 CTCTGTGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAA
* *
28265121 CTCCCTATCCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAAAGACAGAA
321 CTCCCTATCCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGACCAGAAAGACAGAA
* * * * * *
28265186 TGTGCAAGCTAGGGATCGGCCCGGTCCCTCCTACGTGCTGTCGATCCTGATGTCTCAACCCTTGG
386 TGTGCAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGATGTCGCAACCCTCGA
* *
28265251 TCCAATCTGATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGCGG
451 TCCAATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGCGG
* * * * * * * * * *
28265300 ATGAACTTCGTATGCATAAGTCAACCCATGAAATAAAGGTACGAGCGCTGAGCCAG-CTGAAAAC
1 ATGAACTCCGTATGCATAAGTCAACCCATGAAATAAACGTGCGGGCTCTCAGCCGGTC-GGAGAG
* *
28265364 GCATAATGCGTAAGCCGGGGATCAGCCTGATCCCCCTCTGTGTACTGTCGGTCTCGCTACCACAA
65 GCATAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTCTGTGT-CTGTCGATCTCGCTACCACAA
28265429 -CC-C-T-CGATCTGATTTTAGACTGGGAATAAACTCCGTATGCATAAGTCAACCCACGAAATGA
129 CCCTCATCCGATCTGATTTTAGACTGGGAATAAACTCCGTATGCATAAGTCAACCCACGAAATGA
28265490 GCATGCGGGTGCTGAGCCAACCGAAGAGGTATAATGCATAAACAGGGGATCAACCCGGTCCCCTC
194 GCATGCGGGTGCTGAGCCAACCGAAGAGGTATAATGCATAAACAGGGGATCAACCCGGTCCCCTC
28265555 TGTGTGCTA-CTGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
259 TGTGTGCTATC-GGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
* * * * * *
28265619 CCCTATGCCTAAGGCAACCCATGAAACGGGCGTGCGGGCACTCAGCC-AGCCGGAGAGGCAGAAT
323 CCCTATCCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGA-CCAGAAAGACAGAAT
*
28265683 GTGCAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGTTGATCCT-ACTGTCGCAACCCTCGA
387 GTGCAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGA-TGTCGCAACCCTCGA
** * *
28265747 TCCGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
451 TCCAATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGCGG
* * ** *
28265796 ATGAACTCCGTATGCCTAAGTCCACCCATGAAATTTACGTGCGGGCTCTCAACCGGTCGGAGAGG
1 ATGAACTCCGTATGCATAAGTCAACCCATGAAATAAACGTGCGGGCTCTCAGCCGGTCGGAGAGG
* *
28265861 CATAATGCGCAAGCCGGGGATCAGTCTGATCCCCTTCTGGTGT-TGTCGATCTCGCTACCA
66 CATAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTCT-GTGTCTGTCGATCTCGCTACCA
28265921 GTCCTGCTGC
Statistics
Matches: 543, Mismatches: 68, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
495 19 0.03
496 417 0.77
497 6 0.01
499 2 0.00
500 75 0.14
501 23 0.04
502 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (499 bp):
ATGAACTCCGTATGCATAAGTCAACCCATGAAATAAACGTGCGGGCTCTCAGCCGGTCGGAGAGG
CATAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTCTGTGTCTGTCGATCTCGCTACCACAACC
CTCATCCGATCTGATTTTAGACTGGGAATAAACTCCGTATGCATAAGTCAACCCACGAAATGAGC
ATGCGGGTGCTGAGCCAACCGAAGAGGTATAATGCATAAACAGGGGATCAACCCGGTCCCCTCTG
TGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
TATCCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGACCAGAAAGACAGAATGTGC
AAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGATGTCGCAACCCTCGATCCAA
TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGCGG
Found at i:28266454 original size:159 final size:158
Alignment explanation
Indices: 28266150--28266597 Score: 386
Period size: 159 Copynumber: 2.8 Consensus size: 158
28266140 AACTCCGTAT
* *
28266150 CCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTATAAAACGAGCGTGCGGGCACTCAG
1 CCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * *
28266215 CTAGCTGGAGAGACAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGCTATCGATC
65 CCAGCCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCCTACGTACTATCGATC
* * ** * *
28266280 CTGCTATCGTAACCCTCAGTCTGGTCT-GA
130 CCGCTACCACAACCCTCAGTC-CGACTGGA
* * * * *
28266309 CCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 CCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * * * * ** ** *
28266373 GCCCA-CCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTTCTGTGTACTATCGG
64 G-CCAGCCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCCTACGTACTATCGA
* * *
28266437 TCCCGCTACCACGACCCTTAGTCCGACTGGG
128 TCCCGCTACCACAACCCTCAGTCCGACTGGA
* * **
28266468 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAC-AG-GTGTCCGGGTGCTC
1 CCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACAAAACGAGCGTG--CGGGCACTC
* * * * * * ** * *
28266531 AACCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGATCCGAT-CCCCCCTACGTGCTGTCGA
63 AGCCAGCCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCCTACGTACTATCGA
28266595 TCC
128 TCC
28266598 TGCTCTCGCA
Statistics
Matches: 225, Mismatches: 55, Indels: 19
0.75 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 24 0.11
159 193 0.86
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
CAGCCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCCTACGTACTATCGATCC
CGCTACCACAACCCTCAGTCCGACTGGA
Found at i:28266677 original size:26 final size:26
Alignment explanation
Indices: 28266627--28266679 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28266617 CAAGTCTGAT
**
28266627 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28266653 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28266679 C
1 C
28266680 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28267468 original size:18 final size:18
Alignment explanation
Indices: 28267445--28267486 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
28267435 CATGCTGTCG
28267445 ATCCATATGCCTAAGTCA
1 ATCCATATGCCTAAGTCA
28267463 ATCCATATGCCTAAGTCA
1 ATCCATATGCCTAAGTCA
28267481 ATCCAT
1 ATCCAT
28267487 GAAACGAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCCATATGCCTAAGTCA
Found at i:28267808 original size:25 final size:26
Alignment explanation
Indices: 28267760--28267809 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
28267750 CAGTCTGATC
* *
28267760 TAGACTGGGGATGAACTCCATATGCT
1 TAGACTGGGAACGAACTCCATATGCT
28267786 TAGACTGGGAACGAACTCC-TATGC
1 TAGACTGGGAACGAACTCCATATGC
28267810 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAACGAACTCCATATGCT
Found at i:28268462 original size:159 final size:159
Alignment explanation
Indices: 28268169--28268653 Score: 392
Period size: 159 Copynumber: 3.1 Consensus size: 159
28268159 TATTATACTG
* * ** *
28268169 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGAGGGCACTCAGCCGACCGAAG
* * * ** * **
28268234 AGGCAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCCCCTGCTTGCTGTCGATCCTGCTACCGT
66 AGGCAGAATACGCAAGTCGAGGATCACCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTACCAC
28268299 AACCCTCGATCTAGTTTGATCTTAGACTA
131 AACCCTCGATCTAGTTTGATCTTAGACTA
* * * * *
28268328 GGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGTGTGAGGGCACTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGAGGGCACTCAGCCGACCGAAG
* * * ** *
28268393 AGGCATAATACGCAAGTCGATGATCACCCCGATCCCCCTCTGCGTGCTGTC-AGTGTTGCTGCCA
66 AGGCAGAATACGCAAGTCGAGGATCACCCCGATCCCCCCCTGCGTGCTGTCGA-TCCTGCTACCA
* * * **
28268457 CAACCCTCGATC-CGACTAGGGCTTAGAC-A
130 CAACCCTCGATCTAG-TTTGATCTTAGACTA
* * * * * * ** *
28268486 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAGACG-GATGTGTGGGTGCTCAACCGACCGA
1 -GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAG-CGTGAGGGCACTCAGCCGACCGA
* * * * * * * * *
28268550 AGAGGCAGAATGCG-AAG-CCAGGGATCGCCTCGGT-CCCCCCTGCATGTTGCCAATCCTGCTAC
64 AGAGGCAGAATACGCAAGTCGA-GGATCACCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTAC
* * * * * *
28268612 CA-AACCTTCGGTCCAGTCTGATTTTAGACTG
128 CACAACCCTCGATCTAGTTTGATCTTAGACTA
28268643 GGAATGAACTC
1 GGAATGAACTC
28268654 TGTGTGCTTA
Statistics
Matches: 253, Mismatches: 65, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
156 27 0.11
157 24 0.09
158 17 0.07
159 185 0.73
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGAGGGCACTCAGCCGACCGAAG
AGGCAGAATACGCAAGTCGAGGATCACCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTACCAC
AACCCTCGATCTAGTTTGATCTTAGACTA
Found at i:28269064 original size:26 final size:26
Alignment explanation
Indices: 28269013--28269065 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28269003 CCGGTTCGAT
* *
28269013 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28269039 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28269065 C
1 C
28269066 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28270284 original size:26 final size:26
Alignment explanation
Indices: 28270246--28270298 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28270236 CCGGTCTAAT
*
28270246 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28270272 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28270298 C
1 C
28270299 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28270494 original size:195 final size:193
Alignment explanation
Indices: 28270077--28270544 Score: 564
Period size: 195 Copynumber: 2.4 Consensus size: 193
28270067 TCCGACTGGG
* * * *
28270077 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTC-A
* * ** * * *
28270142 CCGGTCAGAGAGGTAGAATGCGCAAGCCGCGGATTGGCCCGGTCCCCCTAGGTGCTATCTATCCT
65 GCGATCAGAGAGGTAGAATGCGCAAGCCGCGGATCAGCCCGGTCCCCCTACGTGCTACCAATCCT
* * * * * *
28270207 GTGCTGGTCCTGCTGTCGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTTCGTAT
130 GTACTGGTCCTGCTCTCACAACCCTAGATCCAGTCTAATCTTAGACTGGGAATGAACTCCGTAT
* * *
28270271 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTAGGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * *
28270336 TCGATCGGAGAGGTAGAATGCGTAAGTCG-GAGATCAGCCCGGTCCCCCTACGTGCTGCCAATCC
66 -CGATCAGAGAGGTAGAATGCGCAAGCCGCG-GATCAGCCCGGTCCCCCTACGTGCTACCAATCC
* * *
28270400 TGCTACTGGTCCTGCTACT-ACAACGCTA-AGTCCAGTCTGATCTTAGACTGGGGATGAACTCCG
129 TG-TACTGGTCCTGCT-CTCACAACCCTAGA-TCCAGTCTAATCTTAGACTGGGAATGAACTCCG
28270463 TAT
191 TAT
* * * * *
28270466 GCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGGTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
28270531 CTGATCAGAGAGGT
66 C-GATCAGAGAGGT
28270545 CGGTTAGAGA
Statistics
Matches: 233, Mismatches: 35, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
193 2 0.01
194 112 0.48
195 118 0.51
196 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (193 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CGATCAGAGAGGTAGAATGCGCAAGCCGCGGATCAGCCCGGTCCCCCTACGTGCTACCAATCCTG
TACTGGTCCTGCTCTCACAACCCTAGATCCAGTCTAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:28271098 original size:159 final size:157
Alignment explanation
Indices: 28270789--28271540 Score: 570
Period size: 159 Copynumber: 4.7 Consensus size: 157
28270779 CTGCTGTTAG
* * *
28270789 TCCTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * * *
28270854 CAACCCATGAAA-GAAGCGTGCGGGTACTCAGCCAGTCGGAGAGGTAGAATGCGCAAGTCGGGGA
66 CAACCCACGAAATG-AGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAG-CCGGGA
* * * *
28270918 CCAGCCCAATCCCCTCATGTGTGCTATCAA
129 TCGGCCCGATCCCCTC-TGTGTGCTATCGA
* * ** *
28270948 TCCTGCTATCGCAACCGTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGT
1 TCCTGCTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
28271013 CAACCCACGAAACGAGCTTGAGGGCGCT-AGGCCGGCCGGAGAGGCATAATGCCCAAGCCTGGGA
66 CAACCCACGAAATGAGCGTGCGGGCGCTCA-GCCAGCCGGAGAGGCAGAATGCGCAAGCC-GGGA
* * *
28271077 TCGGCTCGATCCTCCTCTGTGTGCTACCGG
129 TCGGCCCGATCC-CCTCTGTGTGCTATCGA
* * * ** * *
28271107 TCCCGCTA-CTACAACCCTCAGTCCAG-CTAGGGCTTAGACAT-GGAATGAACTCCCTACGCCTA
1 TCCTGCTATC-GCAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
* ** * *
28271169 AGCCAACCCACGAAATGGGCGTGCGGGCGCTCAATC-GACCGAAGAGGCAGAATGCGCAATCCGG
63 AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAG-CCGGAGAGGCAGAATGCGCAAGCCGG
* * * * * *
28271233 AGATTGGCCTGGTCCACCCCTGCGTGCTGTCGA
127 -GATCGGCCCGATCC-CCTCTGTGTGCTATCGA
* * * * * *
28271266 TCTTGCTACCGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
1 TCCTGCTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * * * *
28271331 CAACCCATGAAATGAGCGTGCGGGCATTGAGCCAGTCGGAGCGGCATAATGCGCAAGCCAGGGAT
66 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCC-GGGAT
** * *
28271396 CGGCCCGATCCCTCTCTGCATGCTGTCGG
130 CGGCCCGATCCC-CTCTGTGTGCTATCGA
* ** * ** * ** * *
28271425 TCCCGCTGCCACAACCCTTTGTCC-GACTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCCAA
1 TCCTGCTATCGCAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* ** * *
28271488 GCCAACCCATGAAATTG-GCGTGCGGATGCTCAG-CTGACCGGAGAGGGAGAATG
64 GCCAACCCACGAAA-TGAGCGTGCGGGCGCTCAGCCAG-CCGGAGAGGCAGAATG
28271541 AACAAGTCGG
Statistics
Matches: 460, Mismatches: 113, Indels: 40
0.75 0.18 0.07
Matches are distributed among these distances:
158 14 0.03
159 430 0.93
160 16 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
TCCTGCTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGATC
GGCCCGATCCCCTCTGTGTGCTATCGA
Found at i:28271556 original size:477 final size:482
Alignment explanation
Indices: 28270648--28271556 Score: 998
Period size: 477 Copynumber: 1.9 Consensus size: 482
28270638 GATCTGGCTG
* *
28270648 GGGCTTAGACATGGAATGAACAACGTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAACAACCTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
28270713 AGCCGACCGAAGAGGCAGAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCCTGTGTGCTATCGAT
66 AACCGACCGAAGAGGCAGAATGCGCAAGTCGGAGATCAGCCCGGTCCCCCCTGCGTGCTATCGA-
* *
28270778 CCTGCTGTTAGTCCTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAAACTGGGAATGAACTCCG
130 -CTGC-GTTAG-CCTAC--TCGCAACCCTCAGTCCGATCCGATCTTAAACTGGGAATGAACTCCG
* *
28270843 TATGCCTAAGCCAACCCATGAAAGAAGCGTGCGGGTACTCAGCCAGTCGGAGAGGTAGAATGCGC
190 TATGCCTAAGCCAACCCATGAAAGAAGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGC
* * ** * * * *
28270908 AAGTCGGGGACCAGCCCAATCCCCTCATGTGTGCTATCAATCCTGCTATCGCAACCGTCGGTCCG
255 AAGCCAGGGACCAGCCCAATCCCCTCATGCATGCTATCAATCCCGCTACCACAACCCTCGGTCCG
* * *** * * * *
28270973 GTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCTTGAGGGC
320 GACTGAGCTTAGACTGGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGCGTGAGGAC
* * ** *
28271038 GCTAGGCCGGCCGGAGAGGCATAATGCCCAAGCCTGGGATCGGCTCGATCCTCCTCTGTGTGCTA
385 GCTAGGCCGACCGGAGAGGCAGAATGAACAAGCCGGGGATCGGCTCGATCCTCCTCTGTGTGCTA
28271103 CCGGTCCCGCTACTACAACCCTCAGTCCAGCTA
450 CCGGTCCCGCTACTACAACCCTCAGTCCAGCTA
** * *
28271136 GGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAACAACCTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * *
28271201 AATCGACCGAAGAGGCAGAATGCGCAA-TCCGGAGATTGGCCTGGTCCACCCCTGCGTGCTGTCG
66 AACCGACCGAAGAGGCAGAATGCGCAAGT-CGGAGATCAGCCCGGTCC-CCCCTGCGTGCTATCG
* * * *
28271265 A-T-C-TT-G-CTAC-CGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTTCGTATG
129 ACTGCGTTAGCCTACTCGCAACCCTCAGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTATG
* * * * *
28271324 CCTAAGTCAACCCATGAAATG-AGCGTGCGGGCATTGAGCCAGTCGGAGCGGCATAATGCGCAAG
194 CCTAAGCCAACCCATGAAA-GAAGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAG
* * * * ** * **
28271388 CCAGGGATCGGCCCGATCCCTCTC-TGCATGCTGTCGGTCCCGCTGCCACAACCCTTTGTCC-GA
258 CCAGGGACCAGCCCAATCCC-CTCATGCATGCTATCAATCCCGCTACCACAACCCTCGGTCCGGA
* * * *
28271451 CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCCAAGCCAACCCATGAAATTG-GCGTGCGGA
322 CT-GAGCTTAGAC-TGGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAA-CGAGCGTGAGGA
* * * *
28271514 TGCTCA-GCTGACCGGAGAGGGAGAATGAACAAGTCGGGGATCG
384 CGCT-AGGCCGACCGGAGAGGCAGAATGAACAAGCCGGGGATCG
28271557 ACCCAGTCCC
Statistics
Matches: 346, Mismatches: 67, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
476 3 0.01
477 215 0.62
478 7 0.02
480 3 0.01
482 1 0.00
483 2 0.01
485 1 0.00
486 1 0.00
487 1 0.00
488 97 0.28
489 15 0.04
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (482 bp):
GGGCTTAGACATGGAATGAACAACCTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AACCGACCGAAGAGGCAGAATGCGCAAGTCGGAGATCAGCCCGGTCCCCCCTGCGTGCTATCGAC
TGCGTTAGCCTACTCGCAACCCTCAGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTATGCC
TAAGCCAACCCATGAAAGAAGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCA
GGGACCAGCCCAATCCCCTCATGCATGCTATCAATCCCGCTACCACAACCCTCGGTCCGGACTGA
GCTTAGACTGGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGCGTGAGGACGCTAGG
CCGACCGGAGAGGCAGAATGAACAAGCCGGGGATCGGCTCGATCCTCCTCTGTGTGCTACCGGTC
CCGCTACTACAACCCTCAGTCCAGCTA
Found at i:28272067 original size:159 final size:157
Alignment explanation
Indices: 28271652--28272068 Score: 453
Period size: 159 Copynumber: 2.6 Consensus size: 157
28271642 AACTCCATAT
* *
28271652 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAG
* * * * *
28271717 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGATCCAGTCCCCCCTACGTGCTGTCGATCC
66 CCGGCC-GAAAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACATGCTGTCGATCC
* * *
28271782 TGCTGTCACAATCCTCGGTCTGGTCTGA
130 CGCTGCCACAACCCTCGGTCTGGTCTGA
* * * * * * *
28271810 TCTTAGA-TTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAACCGAGTGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCA
* * * * * * *
28271874 GCCAGTCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACATGCTGTTGGT
65 GCCGGCCGAA-AGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCC-CTACATGCTGTCGAT
* *
28271939 CCCGCTGCCATAACCCTCGGTCTGG-CTGGG
128 CCCGCTGCCACAACCCTCGGTCTGGTCT-GA
* * * *
28271969 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GAGTGCGGGCGCTCA
* * *
28272033 GTCGGCCTGAAAGGCAGAATGCGCAGGCCAGGGATC
65 GCCGGCC-GAAAGGCAGAATGCGCAAGCCGGGGATC
28272069 AGCTCGGTCC
Statistics
Matches: 209, Mismatches: 43, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 93 0.44
159 109 0.52
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAG
CCGGCCGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACATGCTGTCGATCCC
GCTGCCACAACCCTCGGTCTGGTCTGA
Found at i:28272077 original size:159 final size:156
Alignment explanation
Indices: 28271652--28272154 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 156
28271642 AACTCCATAT
* *
28271652 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAG
* * * * * *
28271717 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGATCCAGTCCCCCCTACGTGCTGTCGATCC
66 CCGGCC-GAAAGGCAGAATGCGCAAGCCGGGGATCGCT-CGGTCCCCCCTACATGCTGTCGATCC
* * *
28271782 TGCTGTCACAATCCTCGGTCTGGTCTGA
129 CGCTGCCACAACCCTCGGTCTGGTCTGA
* * * * * * *
28271810 TCTTAGA-TTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAACCGAGTGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCA
* * * * * * *
28271874 GCCAGTCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACATGCTGTTGGT
65 GCCGGCCGAA-AGGCAGAATGCGCAAGCCGGGGATCG-CTCGGTCCCCC-CTACATGCTGTCGAT
* *
28271939 CCCGCTGCCATAACCCTCGGTCTGG-CTGGG
127 CCCGCTGCCACAACCCTCGGTCTGGTCT-GA
* * * *
28271969 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GAGTGCGGGCGCTCA
* * * *** * *
28272033 GTCGGCCTGAAAGGCAGAATGCGCAGGCCAGGGATCAGCTCGGTCCTTTCTACGTGCTGCCGATC
65 GCCGGCC-GAAAGGCAGAATGCGCAAGCCGGGGATC-GCTCGGTCCCCCCTACATGCTGTCGATC
* * * * * * *
28272098 CTGTTGTCGCAACCCTCAGTCCGGTCCGA
128 CCGCTGCCACAACCCTCGGTCTGGTCTGA
* * *
28272127 TCTCAGAC-TGGGAATGAACTCCTTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
28272155 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 144 0.53
159 117 0.43
160 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAG
CCGGCCGAAAGGCAGAATGCGCAAGCCGGGGATCGCTCGGTCCCCCCTACATGCTGTCGATCCCG
CTGCCACAACCCTCGGTCTGGTCTGA
Found at i:28272173 original size:25 final size:26
Alignment explanation
Indices: 28272131--28272179 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
28272121 GTCCGATCTC
*
28272131 AGACTGGGAATGAACTCCTTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
28272157 AGACTGGG-ATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
28272180 CTGAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:28272890 original size:26 final size:26
Alignment explanation
Indices: 28272861--28272912 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28272851 GCTCAAAATT
28272861 TTAGAC-TGGGAATGAACTCAGTATGC
1 TTAGACAT-GGAATGAACTCAGTATGC
*
28272887 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCAGTATGC
28272913 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCAGTATGC
Found at i:28273428 original size:26 final size:26
Alignment explanation
Indices: 28273390--28273445 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
28273380 CCAATCCGAT
*
28273390 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28273416 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28273442 CTTA
1 CTTA
28273446 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28274790 original size:26 final size:26
Alignment explanation
Indices: 28274761--28274811 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28274751 CCGGTCTGAT
28274761 CTTAGAC-TGGGAATGAACTCCGTATA
1 CTTAGACAT-GGAATGAACTCCGTATA
*
28274787 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
28274812 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:28275132 original size:26 final size:26
Alignment explanation
Indices: 28275103--28275155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28275093 CCGGTCTGAT
28275103 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28275129 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28275155 C
1 C
28275156 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28275485 original size:170 final size:171
Alignment explanation
Indices: 28275128--28275495 Score: 390
Period size: 171 Copynumber: 2.2 Consensus size: 171
28275118 AACTCCGTAT
* * * * *
28275128 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGCTCAA
* * * * * *
28275193 TCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGATTCCCCTCTGCGTGCTGCCGATC
66 CCGATCGGAAAGGCAGAATGCACAAGCCGAGGATCAGCTCGATTCCCCCCTGCGTGCTACCGATC
** * *
28275258 TCGCTATCGATCCTGCTACCACAACCCTGGGTCTGGCTGGG
131 TCGCTATCGATCCTGCTACCACAACCCTCAGTCCGGCTGGA
* * * *
28275299 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGCTCA
* * * *
28275363 ACCG-GCTGGAAAGGTAGAATGCACAAGCTGAGGATC-GACTCGA-TCCCCCCTGCGTGCTATCG
65 ACCGATC-GGAAAGGCAGAATGCACAAGCCGAGGATCAG-CTCGATTCCCCCCTGCGTGCTACCG
* *
28275425 ATC-CTGCTA-CTGGTCCTGCTACCGCAACCCTCAGTCCGGTCT-GA
128 ATCTC-GCTATC-GATCCTGCTACCACAACCCTCAGTCCGG-CTGGA
* *
28275469 TCTTAGACTGGGAATGAACTCCATATG
1 GCTTAGACTGGGAATGAACTCCGTATG
28275496 TTTAGACATG
Statistics
Matches: 163, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
169 3 0.02
170 72 0.44
171 87 0.53
172 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGCTCAA
CCGATCGGAAAGGCAGAATGCACAAGCCGAGGATCAGCTCGATTCCCCCCTGCGTGCTACCGATC
TCGCTATCGATCCTGCTACCACAACCCTCAGTCCGGCTGGA
Found at i:28275997 original size:158 final size:159
Alignment explanation
Indices: 28275653--28275997 Score: 383
Period size: 159 Copynumber: 2.2 Consensus size: 159
28275643 TTTGGGTCGA
* * * * * *
28275653 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGTGCTGAT
1 TCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAC
* * * * * ** *
28275718 CTAGCTAGAGAGGCATAATGCGCAAGCCAAGGATTGGCCCGATCCACCTCTACGTGCTGTCGATC
66 CGAGCTAGAGAAGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCACCCCTACGACCTATCGATC
28275783 CCGCCACCACAACCCTCGGTCTGACTGGG
131 CCGCCACCACAACCCTCGGTCTGACTGGG
* * ** *
28275812 GCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
1 TCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA-
* * * * *
28275877 CCGA-CTGGAGAAGCAGAATGCGCAAGTCATGGATCGGCCTGGTCC-CCCCTACGACCTATCGAT
65 CCGAGCTAGAGAAGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCACCCCTACGACCTATCGAT
* * * *
28275940 CCTGCTACCGCAACCCTTGGTCCT-ATCT-GG
130 CCCGCCACCACAACCCTCGGT-CTGA-CTGGG
28275970 TCTTAGACTGGGAATGAACTCTATATGC
1 TCTTAGACTGGGAATGAACTCTATATGC
28275998 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
158 58 0.38
159 92 0.61
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
TCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAC
CGAGCTAGAGAAGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCACCCCTACGACCTATCGATC
CCGCCACCACAACCCTCGGTCTGACTGGG
Found at i:28276940 original size:26 final size:26
Alignment explanation
Indices: 28276911--28276977 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
28276901 CTGCTACCGC
* *
28276911 AACCCTCAGTCCGGTTCGGCTGCCGT
1 AACCCTCGGTCCGGTTCGGCTGCCAT
* *
28276937 AACCCTCGGTCTGGTTCGGTTGCCAT
1 AACCCTCGGTCCGGTTCGGCTGCCAT
28276963 AACCCTCGGTCCGGT
1 AACCCTCGGTCCGGT
28276978 CTGATCTTCG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.12, C:0.36, G:0.27, T:0.25
Consensus pattern (26 bp):
AACCCTCGGTCCGGTTCGGCTGCCAT
Found at i:28277519 original size:26 final size:26
Alignment explanation
Indices: 28277483--28277535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28277473 TCGATCCGAT
28277483 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28277509 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28277535 C
1 C
28277536 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28278245 original size:26 final size:25
Alignment explanation
Indices: 28278204--28278255 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
28278194 GGCTCAAACT
*
28278204 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
28278229 CTTAGACATGGATTGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
28278255 C
1 C
28278256 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:28278587 original size:26 final size:26
Alignment explanation
Indices: 28278546--28278598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28278536 CCAATTTGAT
*
28278546 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28278572 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28278598 C
1 C
28278599 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28278791 original size:26 final size:26
Alignment explanation
Indices: 28278741--28278793 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28278731 CTGATCTGAT
** **
28278741 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACACGGAATGAACTCCGTATG
28278767 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
28278793 C
1 C
28278794 CTAAGCCAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:28280030 original size:26 final size:26
Alignment explanation
Indices: 28279989--28280041 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28279979 CCGGTTCAAT
28279989 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28280015 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
28280041 C
1 C
28280042 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28281666 original size:26 final size:26
Alignment explanation
Indices: 28281630--28281682 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
28281620 CCGGTCCGAT
28281630 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
28281656 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
28281682 C
1 C
28281683 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:28282478 original size:12 final size:12
Alignment explanation
Indices: 28282458--28282543 Score: 120
Period size: 12 Copynumber: 7.2 Consensus size: 12
28282448 CCGATCCCCC
28282458 CTGCTGATCCTG
1 CTGCTGATCCTG
*
28282470 CTGCCGATCCTG
1 CTGCTGATCCTG
*
28282482 CTACTGATCCTG
1 CTGCTGATCCTG
28282494 CTGCTGATCCTG
1 CTGCTGATCCTG
* *
28282506 CTACTGATCCTA
1 CTGCTGATCCTG
28282518 CTG-TCGATCCTG
1 CTGCT-GATCCTG
28282530 CTGCTGATCCTG
1 CTGCTGATCCTG
28282542 CT
1 CT
28282544 ACTGCAACCC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
11 1 0.02
12 62 0.97
13 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.21, T:0.33
Consensus pattern (12 bp):
CTGCTGATCCTG
Found at i:28282621 original size:26 final size:26
Alignment explanation
Indices: 28282569--28282621 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28282559 TTGATCCGAT
*
28282569 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCACATG
* *
28282595 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATAAACTCCACATG
28282621 C
1 C
28282622 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCACATG
Found at i:28282795 original size:26 final size:26
Alignment explanation
Indices: 28282754--28282806 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28282744 CTGGTTTGAT
28282754 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
28282780 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28282806 C
1 C
28282807 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28283898 original size:26 final size:26
Alignment explanation
Indices: 28283869--28283921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28283859 CCGGTCCACT
*
28283869 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28283895 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28283921 C
1 C
28283922 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28284382 original size:157 final size:155
Alignment explanation
Indices: 28283895--28284394 Score: 456
Period size: 158 Copynumber: 3.2 Consensus size: 155
28283885 ACTCCGTATG
*
28283895 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
28283960 CGGC-CGAAGAGGCAGAATGCGCAAGCTAGGGACTGACTCTATCCCCCCTGTGTGGTGTCGATCC
66 CGACTAG-AGAGGCAGAATGCGCAAGCGA-GGA-TCAGTCTATCCCCTCTGCGTGCTGTCGATCC
* * *
28284024 TGCTGTCACAACCCTCGATCTGATCTGAT
128 TGCTGCCACAACCCTCGGTCTG-TTTGAT
* * * * *
28284053 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-TAACCCATGAAATGAGCGTTCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
28284116 CCGACTGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCTATCCCACTCTACGTGCTATC-AGT
65 CCGACTAGAGAGGCAGAATGCGCAAG-CGAGGATCAG-TCTATCCC-CTCTGCGTGCTGTCGA-T
* * * **
28284180 -CTCGCTGCCACAACCCTCAGTCTGGCTGGGG
126 CCT-GCTGCCACAACCCTCGGTCT-GTTTGAT
* * * *
28284211 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
28284276 CGATTAGAG-GGCAGAATGCGCAAGTCGAGGATCAGTCTGGTCCCCTCTGCGTGCTGTCGATCCT
66 CGACTAGAGAGGCAGAATGCGCAAG-CGAGGATCAGTCT-ATCCCCTCTGCGTGCTGTCGATCCT
** * *
28284340 GCTGCCGTAACCCTTGGTTTAGTTTGAT
129 GCTGCCACAACCCTCGGTCT-GTTTGAT
*
28284368 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
28284395 TTAGATTGGT
Statistics
Matches: 269, Mismatches: 59, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 115 0.43
158 119 0.44
159 33 0.12
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACTAGAGAGGCAGAATGCGCAAGCGAGGATCAGTCTATCCCCTCTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCGGTCTGTTTGAT
Found at i:28285300 original size:159 final size:156
Alignment explanation
Indices: 28284982--28285323 Score: 354
Period size: 159 Copynumber: 2.2 Consensus size: 156
28284972 AAGTCAGTCA
* * * *
28284982 GAGAGGCAGAATGTGCAAGCCGGGGACCAACCCGGTCCCCCTACGTGCTGTCGATCCTGCTGTCA
1 GAGAGGCAGAATGCGCAAGCCGGGGACCAACCCGATCCCCCTACGTGCTGTCGATCCCGCTGCCA
* *
28285047 CAACCCTCGATCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
66 CAACCCTCGATCTGG-CCTAGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
28285112 ATGAGCGTGTGGGCGTTGAGCCAACCG
130 ACGAGCGTGTGGGCGCTCAGCCAACCG
* * * * *
28285139 GAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCTTCTACGTGCTGTCGGTCCCGCTGC
1 GAGAGGCAGAATGCGCAAGCCGGGGACCAACCCGATCCCC--CTACGTGCTGTCGATCCCGCTGC
* *
28285204 CACAACCCTCGATCTGG-CTGGGGCTTAGACAT-GGAATAAACTCC-TATGCCTAAG-CTAGCCC
64 CACAACCCTCGATCTGGCCT--AGCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTC-AACCC
* **
28285265 ATGAAACG-G-GTGTGCGGCCGCTCAGCCGGCACG
125 ACGAAACGAGCGTGTG-GG-CGCTCAGCCAAC-CG
* *
28285298 GAGAGGCAGAAATGCACCAGCCGGGG
1 GAGAGGCAG-AATGCGCAAGCCGGGG
28285324 CATCTACCTA
Statistics
Matches: 152, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
156 5 0.03
157 40 0.26
158 28 0.18
159 65 0.43
160 14 0.09
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (156 bp):
GAGAGGCAGAATGCGCAAGCCGGGGACCAACCCGATCCCCCTACGTGCTGTCGATCCCGCTGCCA
CAACCCTCGATCTGGCCTAGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGTGGGCGCTCAGCCAACCG
Found at i:28285430 original size:27 final size:28
Alignment explanation
Indices: 28285388--28285443 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
28285378 CCGATCTGAT
*
28285388 CTTAGACTGGGAATGAACT-TTGGTATG
1 CTTAGAATGGGAATGAACTCTTGGTATG
* *
28285415 CTTAGAATGGGGATGAACTCTTGTTATG
1 CTTAGAATGGGAATGAACTCTTGGTATG
28285443 C
1 C
28285444 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
CTTAGAATGGGAATGAACTCTTGGTATG
Found at i:28290416 original size:26 final size:26
Alignment explanation
Indices: 28290380--28290432 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28290370 CCGGTTCGAT
*
28290380 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28290406 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28290432 C
1 C
28290433 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28290762 original size:170 final size:171
Alignment explanation
Indices: 28290405--28290772 Score: 429
Period size: 171 Copynumber: 2.2 Consensus size: 171
28290395 AACTCTGTAT
* ** *
28290405 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACCAAATGAGCGTGCGGGCACTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAATGAGCGTGCGGGCACTCAG
* * * * * *
28290470 TCGGCCGGAGAGGCATAATGCGCAAGCTGAGGATCAGTCCAGTCCCCCTCTGCTTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGGCCAGTCCCCCTCTACGTGCTGTCGATC
*
28290535 CCACTGCTGGTCCTGCTACCACAACCCTCGGTCCGATTGGG
131 CCACTGCTGGTCCTGCTACCACAACCCTCGGTCCGATTGGA
**
28290576 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAATGAGCGTGCGGGCACTCA
* * * * * *
28290640 GCCGGTCGGAGAGGTAGAATGTGTAAGCCGGGGATC-GGCCTGATCCCCC-CTACGTGCTGTCGA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGGCCAG-TCCCCCTCTACGTGCTGTCGA
*** * * * *
28290703 TCCTGTTGCTGGTCCTGCTGCCATAACCCTCGGTCTGGTCT-GA
129 TCCCACTGCTGGTCCTGCTACCACAACCCTCGGTCCGAT-TGGA
* *
28290746 TCTTAGACTGGGAATGAACTCTGTATG
1 GCTTAGACTGGGAATGAACTCCGTATG
28290773 TTTAGACATG
Statistics
Matches: 165, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
169 1 0.01
170 72 0.44
171 91 0.55
172 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAATGAGCGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGGCCAGTCCCCCTCTACGTGCTGTCGATC
CCACTGCTGGTCCTGCTACCACAACCCTCGGTCCGATTGGA
Found at i:28291308 original size:158 final size:156
Alignment explanation
Indices: 28290774--28291297 Score: 428
Period size: 158 Copynumber: 3.3 Consensus size: 156
28290764 CTCTGTATGT
* * * * * * *
28290774 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGTGCTCAGTT
1 TTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCT
** * * * * *
28290839 GGTCGGAGAGGCAGAATACGCAAGCCGGGGA-TCGACCAAATCCCCCC-TACGTGCTATCGATCC
65 GACCGGAGAGGCAGAATGCGCAAGTCGGGGATTAG-CC-AAGCCCCCCTTACGTGCTGTCGATCC
* * ** *
28290902 TACTGTCGCAACCCTCGGTCTGGTCCGATC
128 TGCTCT-GCAACCCTCGGTCCAGTCTGATC
* * * *
28290932 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGC-
1 TTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCT
* * * ** * *
28290996 AAGCCGGAGAGGCATAATGCGCAAGTCGGGGATTGGCCTGGTCCCCCTCTACGTGCTG-CCAGTC
65 GA-CCGGAGAGGCAGAATGCGCAAGTCGGGGATTAGCCAAGCCCCCCT-TACGTGCTGTCGA-TC
* * ** * * * **
28291060 CCGTTGCCACAACCCTCGAT-CTGGCTAGGGC
127 CTGCT-CTGCAACCCTCGGTCCAGTCT-GATC
* * * ** * *
28291091 GTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCTTGAAATGGGCGTACAGGCGCTCAACT
1 TTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCT
* *
28291156 GACCGGAGAGGCAGAATGCACAAGTCGGGGATTAGCCCAGCCCCCCTTACGTGCTGTCGATCCTG
65 GACCGGAGAGGCAGAATGCGCAAGTCGGGGATTAGCCAAGCCCCCCTTACGTGCTGTCGATCCTG
*
28291221 CTACTGCAACCCTTGGTCCAGTCTGATC
130 CT-CTGCAACCCTCGGTCCAGTCTGATC
* * *
28291249 TTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGC
1 TTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC
28291298 ATGCAAGCGC
Statistics
Matches: 279, Mismatches: 74, Indels: 26
0.74 0.20 0.07
Matches are distributed among these distances:
157 7 0.03
158 148 0.53
159 122 0.44
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
TTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCTG
ACCGGAGAGGCAGAATGCGCAAGTCGGGGATTAGCCAAGCCCCCCTTACGTGCTGTCGATCCTGC
TCTGCAACCCTCGGTCCAGTCTGATC
Found at i:28292079 original size:184 final size:184
Alignment explanation
Indices: 28291770--28292136 Score: 515
Period size: 184 Copynumber: 2.0 Consensus size: 184
28291760 GGATGGGGCT
*
28291770 TAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAGCCG
* * * * *
28291835 ACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTGTCGATCCTGC
66 ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATACTGTCGATCCTAC
* * *
28291900 TG-CTGCAGCCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCTATATGCG
131 -GACCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCTATATGCG
* * * *
28291954 TAGACATGGAATGAATTCCGTATGCCTAAGCCAACCTAGGAAATGAGTGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAGCCG
** *
28292019 GTCGGAGAGGCAGAATGCGCAAGCC-AGGGATCGACCC-AGTCCCCTCTGCATACTGTCGATCCT
66 ACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGA-TCCCCCCTGCATACTGTCGATCCT
* * *
28292082 ACGACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
129 ACGACCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCTATATGC
28292137 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
183 3 0.02
184 158 0.98
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (184 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAGCCG
ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATACTGTCGATCCTAC
GACCGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCTATATGCG
Found at i:28292458 original size:158 final size:157
Alignment explanation
Indices: 28292170--28292602 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 157
28292160 GTGTTATCGG
* ** * * *
28292170 TCCCGCTACCACAACCCTCGGTTCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCCACTACCACAACCCTCAATCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * * * * ** *
28292235 TAAGCCATGAAACGGGCATGTGGGCGTTCAACCGACCGGAGAGGCAGAATGCGCAAGTTGGGGAT
66 -AACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAGAATGCACAAGCCGAGGAT
* *
28292300 CGGCCTGAT-CCCCACTGCATGTTACCGA
130 CGACCTGATCCCCCA-TGCATGCTACCGA
* * * * * *
28292328 TCCTACTATCGCAACCTTCAATCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
1 TCCCACTACCACAACCCTCAATCCGACT-CGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
* * *
28292391 GTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAATCAGAGAGGCATAATGCACAAGCCGAGG
64 G-CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAGAATGCACAAGCCGAGG
* *
28292456 ATCGACCTGATCCCCCTATGCGTGCTATCGA
128 ATCGACCTGATCCCCC-ATGCATGCTACCGA
* * * * * * *
28292487 TCCCCCTGCCATAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCCACTACCACAACCCTCAATCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAG-
* * *
28292552 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGAGGCAGAATG
65 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAGAATG
28292603 TGCAAGTCGG
Statistics
Matches: 217, Mismatches: 51, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 105 0.48
159 107 0.49
160 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.18
Consensus pattern (157 bp):
TCCCACTACCACAACCCTCAATCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
AACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAGAATGCACAAGCCGAGGATC
GACCTGATCCCCCATGCATGCTACCGA
Found at i:28292617 original size:159 final size:158
Alignment explanation
Indices: 28292158--28292617 Score: 462
Period size: 158 Copynumber: 2.9 Consensus size: 158
28292148 CACGAAACGA
* * *
28292158 GCGTGTTATCGGTCCCGCTACCACAACCCTCGGT-TCGACTAGGGCTTAGACATGGAATGAACTC
1 GCGTGTTATCGATCCCACTACCACAACCCTCGATCT-GACTAGGGCTTAGACATGGAATGAACTC
* * * * * * * *
28292222 CCTATGCCTAAGCTAAGCCATGAAACGGGCATGTGGGCGTTCAACC-GACCGGAGAGGCAGAATG
65 CCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGAGGCAGAATG
* *
28292286 CGCAAGTTGGGGATCGGCCTGATCCCCACT
129 CGCAAGTCGGGGATCGACCTGATCCCCACT
* * * * * * * * * **
28292316 GCATGTTACCGATCCTACTATCGCAACCTTCAATCCGA-TCCGATCTTAGAC-TGGGAATGAACT
1 GCGTGTTATCGATCCCACTACCACAACCCTCGATCTGACT-AGGGCTTAGACAT-GGAATGAACT
* * * ** *
28292379 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAATCAGAGAGGCATAATG
64 CCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATG
* * *
28292444 CACAAGCCGAGGATCGACCTGATCCCC-CTAT
129 CGCAAGTCGGGGATCGACCTGATCCCCAC--T
* * * * *
28292475 GCGTGCTATCGATCCCCCTGCCATAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCC
1 GCGTGTTATCGATCCCACTACCACAACCCTCGATCTGACTAGGGCTTAGACATGGAATGAACTCC
* * *
28292540 CTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGAGGCAGAATGTG
66 CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCG
28292605 CAAGTCGGGGATC
131 CAAGTCGGGGATC
28292618 AGGCTAGTCC
Statistics
Matches: 234, Mismatches: 60, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 116 0.50
159 113 0.48
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCGTGTTATCGATCCCACTACCACAACCCTCGATCTGACTAGGGCTTAGACATGGAATGAACTCC
CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCG
CAAGTCGGGGATCGACCTGATCCCCACT
Found at i:28292713 original size:26 final size:26
Alignment explanation
Indices: 28292677--28292729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28292667 CTGGTCTGAT
*
28292677 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
28292703 CTTAGACTGAGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
28292729 C
1 C
28292730 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:28293102 original size:158 final size:158
Alignment explanation
Indices: 28292828--28293155 Score: 426
Period size: 158 Copynumber: 2.1 Consensus size: 158
28292818 ACATGGATTG
* * * * ** *
28292828 AACTCCGCATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTTAGCCGATTGGAGAGGTAG
1 AACTCCGTATGCCCAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAG
* * **
28292893 AATGCGCAAGCCAGGGATCGGCCTAGTCCCTCATGCGTGCTATCGATCCTGCTACCGCAAGTCTC
66 AATGCGCAAGCCAGGGATCGGCCTAGTCCCCCATGCGTGCTACCGATCCTGCTACCGCAACCCTC
* *
28292958 -GATCCGGTCTGATCTTAGACTGGGAATC
131 AG-TCCGATCCGATCTTAGACTGGGAATC
*
28292986 AACTCCGTATGCCCAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAG
1 AACTCCGTATGCCCAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAG
* * * **
28293051 AATGCGCAAGCCGGGGATCGG-CTTGATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCT
66 AATGCGCAAGCCAGGGATCGGCCTAG-TCCCCCATGCGTGCTACCGATCCTGCTACCGCAACCCT
* * *
28293115 CAGTCTGATCCGATCTTAGACTGGGGATG
130 CAGTCCGATCCGATCTTAGACTGGGAATC
28293144 AACTCCGTATGC
1 AACTCCGTATGC
28293156 TTAGACTGGT
Statistics
Matches: 146, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
157 3 0.02
158 142 0.97
159 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
AACTCCGTATGCCCAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAG
AATGCGCAAGCCAGGGATCGGCCTAGTCCCCCATGCGTGCTACCGATCCTGCTACCGCAACCCTC
AGTCCGATCCGATCTTAGACTGGGAATC
Found at i:28293158 original size:26 final size:26
Alignment explanation
Indices: 28293129--28293181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28293119 CTGATCCGAT
28293129 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
* *
28293155 CTTAGACTGGTGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
28293181 C
1 C
28293182 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:28293609 original size:171 final size:171
Alignment explanation
Indices: 28293167--28293610 Score: 464
Period size: 171 Copynumber: 2.6 Consensus size: 171
28293157 TAGACTGGTG
* * * * * * *
28293167 ATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCCCTCAGCTGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
* * * *
28293232 CATAATGCACAAGC-CAGGGATCAGCCCGGTCCCCCAC-TACGTGCTATCAATCTCGCTGCCGGT
66 CAGAATGCGCAAGCTGA-GGATCAGCCCGGTCCCCC-CTTACGTGCTACCAATCTCGCTGCCGGT
* * * * *
28293295 CCTACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACACAGA
129 CCTACTACCACAACCCTCGATCCGGTTCGAGCTTAAACACAGA
* * * *
28293338 ATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAGCCGGCTGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
* * * * * ** * *
28293403 TAGAATGCGTAAG-TCGGGGATCGGCCCGATCCCCCCTTGTGTGCTACCGATC-CTGCTGCTGGT
66 CAGAATGCGCAAGCT-GAGGATCAGCCCGGTCCCCCCTTACGTGCTACCAATCTC-GCTGCCGGT
* * * ***
28293466 CCTACTACCGCAACCCTCGATCTGGTTCGATCTTAAACTGGGA
129 CCTACTACCACAACCCTCGATCCGGTTCGAGCTTAAACACAGA
* * *
28293509 ATGAACTCCGTATGCCTAAGCCAGCCCACGAAACGAGCGTGCGGGCACTCAGCCAGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
* *
28293574 CAGAATGCGCAAGCTGAGGATCAACCTGGTCCCCCCT
66 CAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCCT
28293611 GCATGCTATC
Statistics
Matches: 220, Mismatches: 48, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
170 2 0.01
171 217 0.99
172 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
CAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCCTTACGTGCTACCAATCTCGCTGCCGGTCC
TACTACCACAACCCTCGATCCGGTTCGAGCTTAAACACAGA
Found at i:28293959 original size:26 final size:26
Alignment explanation
Indices: 28293923--28293975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28293913 CTAGTTTGAT
*
28293923 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28293949 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28293975 C
1 C
28293976 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28296207 original size:26 final size:26
Alignment explanation
Indices: 28296171--28296225 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
28296161 CCCCCCTGTG
28296171 TGCTTAGACTGGGAAAGAACTCCGTA
1 TGCTTAGACTGGGAAAGAACTCCGTA
* *
28296197 TGCTTAGACTGGGGATGAACTCCGTA
1 TGCTTAGACTGGGAAAGAACTCCGTA
28296223 TGC
1 TGC
28296226 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TGCTTAGACTGGGAAAGAACTCCGTA
Found at i:28297301 original size:26 final size:26
Alignment explanation
Indices: 28297263--28297315 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28297253 GGCTCAAAAT
*
28297263 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
28297289 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
28297315 C
1 C
28297316 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:28297653 original size:159 final size:160
Alignment explanation
Indices: 28297286--28297653 Score: 381
Period size: 159 Copynumber: 2.3 Consensus size: 160
28297276 TGAACTTTGT
* *
28297286 ATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGAGCGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTC
* ** * * *
28297351 AGTCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCTGATCCCCCCTTGTGTGCTATCGA
66 AGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTTGTGTGCTATCGA
* *** * *
28297416 TCCTACTACTGTAACCCTCAGTCTGGTCTG
131 TCCCACTACCACAACCCTCAGTCTCGACTG
* * * * * * * * *
28297446 AT-CTTATA-TTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGTGTGCGGGCGTT
1 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCT
* * *
28297509 GAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGTTG-T-
65 CAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CT-TGTG-TGCTA
*
28297572 TC-ATCCCACTACCACAACCCTCGGTC-CGACTG
127 TCGATCCCACTACCACAACCCTCAGTCTCGACTG
* *
28297604 -TGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACG
1 AT-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
28297654 GGCATACGGG
Statistics
Matches: 166, Mismatches: 35, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.01
158 5 0.03
159 146 0.88
160 7 0.04
161 5 0.03
162 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (160 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTC
AGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTTGTGTGCTATCGA
TCCCACTACCACAACCCTCAGTCTCGACTG
Found at i:28297774 original size:26 final size:26
Alignment explanation
Indices: 28297745--28297797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28297735 TCGATCCGAT
*
28297745 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28297771 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28297797 C
1 C
28297798 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28298617 original size:26 final size:26
Alignment explanation
Indices: 28298588--28298637 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
28298578 CCGGTCCGAT
*
28298588 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28298614 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
28298638 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28299432 original size:25 final size:26
Alignment explanation
Indices: 28299391--28299439 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
28299381 CCGATCCGAT
28299391 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
28299417 CTTAGA-TGGGGATGAACTCCGTA
1 CTTAGATTGGGAATGAACTCCGTA
28299440 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:28300054 original size:159 final size:159
Alignment explanation
Indices: 28299625--28300126 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 159
28299615 AACTTCGTAT
* ** * *
28299625 GCTTAGACATGGAATGAACTCTATATAACTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCGCTCAG
* *
28299690 CCGGCTGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCC--CTGTGTGCTATCGAT
66 CCGAC-GGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTCTGTGTGCTATCGAT
* *
28299753 CCTGCTGCCGCAACCCTGGGTTCGATCCGA
130 CCTGCTGCCACAACCCTCGGTTCGATCCGA
* * * * * * * * *
28299783 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCGCTCA
* * * * * *
28299847 GCCAGTCGGAGAGGTATAATGCACAAG-CTGGGGATCGGTCCGAT-CCCCTTCTGTGTGCT-GCT
65 GCC-GACGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCCGATCCCCCTTCTGTGTGCTATC-
* * * *
28299909 GGTCCTGTTGCCACAACCCTCGG-TCTGA-CTGGG
127 GATCCTGCTGCCACAACCCTCGGTTC-GATC-CGA
* * *
28299942 GCTTAGACATGGAATGAACTCCCTATGCCT-AGCCAACCCATAAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCGCTCAG
* * *
28300006 CCGACAAGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCTTAC---GTGCTATCGA
66 CCGAC-GGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTT-CTGTGTGCTATCGA
* * * *
28300068 TCTTGCTGCCACAACCCTCGGTCCGGTCTGA
129 TCCTGCTGCCACAACCCTCGGTTCGATCCGA
* *
28300099 TCTTAGAC-TGGGAATGAACTCCTTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
28300127 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 56, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.00
157 59 0.22
158 145 0.54
159 64 0.24
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCGCTCAG
CCGACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTCTGTGTGCTATCGATC
CTGCTGCCACAACCCTCGGTTCGATCCGA
Found at i:28300136 original size:26 final size:26
Alignment explanation
Indices: 28300100--28300152 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28300090 CCGGTCTGAT
*
28300100 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28300126 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28300152 C
1 C
28300153 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28301106 original size:159 final size:159
Alignment explanation
Indices: 28300829--28301423 Score: 600
Period size: 159 Copynumber: 3.8 Consensus size: 159
28300819 TCTTAAACTG
* * * * * * *
28300829 GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCATGCGGGTGCTTAG-CCAGTTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGA-CTGGA
* * * * *
28300893 GAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCTCCC-CTACGTGTTGTCGATCCTGCTGCC
65 GAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCC-CCCTCTGCGTGCTGTCGATCCCGCTGCC
* * *
28300957 GCAACCCTTGGTCCGGTGCAATCTTAGAC-T
129 ACAACCCTCGGTCCGGTGCAAGCTTAGACAT
* * * * * * * *
28300987 GGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCACTGAGTCGATTGAA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACTGGA
* * * *
28301052 GAGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCA
65 GAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCA
28301117 CAACCCTCGGTCCGGCTGC-AGCTTAGACAT
130 CAACCCTCGGTCCGG-TGCAAGCTTAGACAT
* * * * *
28301147 GTAATGAACT-CGCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCA-TCCGGCTGG
1 GGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT-CGACTGG
* **
28301210 AGAGGCAGAATGCGCCAGCC-AGGGATCGGC-CTGGTCCCCCT-TGCGTGCTACCGATCCCGCTG
64 AGAGGCAGAATGCGCAAGCCGA-GGATCGGCTC-GGTCCCCCTCTGCGTGCTGTCGATCCCGCTG
* * * *
28301272 CCATAACCCTCGGTTCGACTG-AGGCTTAGACAT
127 CCACAACCCTCGGTCCG-GTGCAAGCTTAGACAT
* * * *
28301305 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACTGGAG
* * * * *
28301370 AGGCAGAATGTGCAAGTCGAGGATCGGCTCGAT-CCCCTTTGTGTGCTGTCGATC
66 AGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATC
28301424 GTGCTGTCGT
Statistics
Matches: 361, Mismatches: 60, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
157 5 0.01
158 144 0.40
159 206 0.57
160 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACTGGAG
AGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAC
AACCCTCGGTCCGGTGCAAGCTTAGACAT
Found at i:28301480 original size:158 final size:159
Alignment explanation
Indices: 28300818--28301480 Score: 556
Period size: 159 Copynumber: 4.2 Consensus size: 159
28300808 GTGGCTCAAA
* * * * * *
28300818 ATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCATGCGGGTGCTTA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * *
28300883 GCC-AGTTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCA-GTCCTCCCCTACGTGTTGTCG
66 GCCGA-CTGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCAGGTCC-CCTTTGCGTGCTGTCG
* ** * * * *
28300946 ATCCTGCTGCCGCAACCCTTGGTCCGGTGCA
129 ATCCCGCTGCCATAACCCTCGGTCCGATCCG
* * * * * *
28300977 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCACTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
28301042 GTCGATTGAAGAGGCATAATGCGCAAGTCGGGGATCGGCTC-GGTCCCCCTCTGCGTGCTGTCGA
66 GCCGACTGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCAGGT-CCCCTTTGCGTGCTGTCGA
* * * *
28301106 TCCCGCTACCACAACCCTCGGTCCG-GCTG
130 TCCCGCTGCCATAACCCTCGGTCCGATCCG
* * * * *
28301135 CAGCTTAGACAT-GTAATGAACT-CGCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGC
1 -ATCTTAGAC-TGGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * **
28301198 TCATCCGGCTGGAGAGGCAGAATGCGCCAG-CCAGGGATCGGC-CTGGTCCCCCTTGCGTGCTAC
63 TCAGCCGACTGGAGAGGCAGAATGCGCAAGTCGA-GGATCGGCTCAGGTCCCCTTTGCGTGCTGT
* *
28301261 CGATCCCGCTGCCATAACCCTCGGTTCGA-CTG
127 CGATCCCGCTGCCATAACCCTCGGTCCGATCCG
* * *
28301293 AGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCT
1 A-TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * * *
28301357 CAGCCGACCGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCTC-GATCCCCTTTGTGTGCTGTCG
64 CAGCCGACTGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCAGGTCCCCTTTGCGTGCTGTCG
** * * ** * * *
28301421 ATCGTGCTGTCGTTGCCTTCAGTCCTATCCG
129 ATCCCGCTGCCATAACCCTCGGTCCGATCCG
*
28301452 ATCTTAGACTGGGAATGAACTTCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
28301481 TTAGATTGGG
Statistics
Matches: 407, Mismatches: 82, Indels: 31
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.00
158 188 0.46
159 213 0.52
160 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGACTGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCAGGTCCCCTTTGCGTGCTGTCGAT
CCCGCTGCCATAACCCTCGGTCCGATCCG
Found at i:28301490 original size:26 final size:26
Alignment explanation
Indices: 28301454--28301506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28301444 CCTATCCGAT
28301454 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
28301480 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
28301506 C
1 C
28301507 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:28301842 original size:26 final size:26
Alignment explanation
Indices: 28301813--28301863 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
28301803 CCGATCTGAT
28301813 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28301839 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
28301864 ACCTAAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28301964 original size:184 final size:184
Alignment explanation
Indices: 28301654--28302023 Score: 456
Period size: 184 Copynumber: 2.0 Consensus size: 184
28301644 TCCAGCTGGG
* * **
28301654 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGAGGGAGCTCAG
* * * **
28301719 CTGGCCGGAGAGACAAAATTCACAAGTCAGGGATCGTTTCGATCCCCCCTACGTACTGTCGATCC
66 CCGACCGGAGAGACAAAATGCACAAGTCAGGGATCGGCTCGATCCCCCCTACGTACTGTCGATCC
*
28301784 TGCTGCCA-TAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCACT-ACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
28301838 GCTTAGACATGGAATGAACTCCGTATACCTAAGCTAACCCACAAAACGAGCGTGCGGGCA-CTCA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGAGGG-AGCTCA
* * * ** * * ** *
28301902 GCCGACCGTAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCGATC
65 GCCGACCGGAGAGACAAAATGCACAAGTCAGGGATCGGCTCGATCCCCCCTACGTACTGTCGATC
* * ** * *
28301967 CTGCTGCCACTACCCTGGGTTTGATCCGATCTTAGATTGGGAATGAACTTCGTAT
130 CTGCTGCCACTACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
28302022 GC
1 GC
28302024 CTAAGTCAAC
Statistics
Matches: 156, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
184 154 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGAGGGAGCTCAG
CCGACCGGAGAGACAAAATGCACAAGTCAGGGATCGGCTCGATCCCCCCTACGTACTGTCGATCC
TGCTGCCACTACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:28302092 original size:158 final size:156
Alignment explanation
Indices: 28301848--28302332 Score: 508
Period size: 159 Copynumber: 3.1 Consensus size: 156
28301838 GCTTAGACAT
* * *
28301848 GGAATGAACTCCGTATACCTAAGCTAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACCGTAG
1 GGAATGAACTCCGTATGCCTAAGC-AACCCACAAAATGAGCGTGCGGGCACTCAGCCGACCGGAG
* * * * * * *
28301913 AGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCACT
65 AGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTGCCACA
* * *
28301978 ACCCTGGGTTTGATCCGATCTTAGATTG
130 ACCCT-AGTTCGATCAGATCTTAGATTG
* * * *
28302006 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGCC-AGCCGGA
1 GGAATGAACTCCGTATGCCTAAG-CAACCCACAAAATGAGCGTGCGGGCACTCAGCCGA-CCGGA
* * *
28302070 GAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGTTGCCA
64 GAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGTTGCCA
* * * * ** * *
28302135 CAACCCTCGATCCAGCTAGGGCATAGACCT-
128 CAACCCTAGTTCGATC-AGATCTTAGA-TTG
* * *
28302165 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCACTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAG-CAACCCACAAAATGAGCGTGCGGGCACTCAGCCGACCGGAG
** * * * * *
28302230 AGGCAGAATGAGCAAGCCGGGGATTAGCCCCGTCCCCCCTGCATG-TGCCGATCCTATTGCCGCA
65 AGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTGCCACA
* *
28302294 ACCCTCAGTCCGATCTGATCTTAGATTG
130 ACCCT-AGTTCGATCAGATCTTAGATTG
28302322 GGAATGAACTC
1 GGAATGAACTC
28302333 TATATGCTTA
Statistics
Matches: 265, Mismatches: 54, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 38 0.14
158 101 0.38
159 123 0.46
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGACCGGAGA
GGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTGCCACAA
CCCTAGTTCGATCAGATCTTAGATTG
Found at i:28302364 original size:26 final size:26
Alignment explanation
Indices: 28302313--28302365 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28302303 CCGATCTGAT
* *
28302313 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28302339 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28302365 C
1 C
28302366 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28307993 original size:26 final size:27
Alignment explanation
Indices: 28307944--28307996 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
28307934 TCCGATCGAT
28307944 CTTAGACTGGGAAATGAACTCCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
*
28307971 CTTAGACTGGG-GATGAACTCCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
28307997 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAAATGAACTCCGTATG
Found at i:28308355 original size:26 final size:26
Alignment explanation
Indices: 28308326--28308378 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28308316 CCGGTCTGAT
28308326 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28308352 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28308378 C
1 C
28308379 CAACCCACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28308857 original size:26 final size:26
Alignment explanation
Indices: 28308821--28308873 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28308811 TTGGTCCGAT
*
28308821 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28308847 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28308873 C
1 C
28308874 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28310614 original size:159 final size:159
Alignment explanation
Indices: 28310215--28310686 Score: 429
Period size: 158 Copynumber: 3.0 Consensus size: 159
28310205 TCGGTCCTGC
*
28310215 TACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TACCA-AACCCTCGGTTTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
** * * *** * * * *
28310280 ATAAAATGTGCGTGCGGGCATTCAGCCAATCGGAGAGGCAAAATACGCAAGCCGGGGATGGGCCC
65 ACGAAACGAGCGTGCGGGTGCTCAGCCAACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCC
* *
28310345 AGTCCCCCCTACGTGCTATCGATCCTGCTG
130 AGTCCCCCCTACATGCTATCGATCCAGCTG
** * * ** * * *
28310375 TGGC-AACCCTCGGTTTGGTTTGATCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCC
1 TACCAAACCCTCGGTTTGGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * *
28310438 ACGAAACGAGCGTGCGGGTGCTGAGCCAACCGAAGAAGCATAATGCGCAAGCCGGGGATCGACCC
65 ACGAAACGAGCGTGCGGGTGCTCAGCCAACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCC
* *
28310503 -GATCCCCCTCTACATGCT-GCTGGTCCAG-T-
130 AG-TCCCCC-CTACATGCTATC-GATCCAGCTG
* *
28310532 TACCATAACCCTCGGTTTGGCTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCC
1 TACCA-AACCCTCGGTTTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
28310597 ACGAAACG-GCCAG-GCGGGTGGTCAGCCAGCAGGAGAGGCAGAATGCGCAGGCCGAGGATCGGC
65 ACGAAACGAG-C-GTGCGGGTGCTCAGCCAACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGAC
* * * * *
28310660 TCGGTCCCCCTTTCTTGCTATCGATCC
128 CCAGTCCCCCCTACATGCTATCGATCC
28310687 TATTACCGCA
Statistics
Matches: 245, Mismatches: 56, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 118 0.48
159 118 0.48
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
TACCAAACCCTCGGTTTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACGAGCGTGCGGGTGCTCAGCCAACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCA
GTCCCCCCTACATGCTATCGATCCAGCTG
Found at i:28312161 original size:26 final size:25
Alignment explanation
Indices: 28312122--28312171 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
28312112 GTTCAAACTC
28312122 TTAGACTAGAATGAACTCCGTATGT
1 TTAGACTAGAATGAACTCCGTATGT
*
28312147 TTAGACATGGAATGAACTCCGTATG
1 TTAGAC-TAGAATGAACTCCGTATG
28312172 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (25 bp):
TTAGACTAGAATGAACTCCGTATGT
Found at i:28312499 original size:26 final size:26
Alignment explanation
Indices: 28312463--28312515 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28312453 CTGATCTGAT
28312463 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
28312489 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28312515 C
1 C
28312516 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28312697 original size:26 final size:26
Alignment explanation
Indices: 28312659--28312711 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28312649 CTGATCTGAT
28312659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28312685 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28312711 C
1 C
28312712 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28312804 original size:196 final size:196
Alignment explanation
Indices: 28312431--28312812 Score: 491
Period size: 196 Copynumber: 1.9 Consensus size: 196
28312421 GTGCTGCTGA
*
28312431 TCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * ** *
28312496 TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCATGCAGGTGGTCAGTCGGTCGG
66 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACAGGTGCTCAACCGATCGG
* * * *
28312561 AGAGACAGATGCACAAGTCGGGGATCGGCTCGGTCCCCCCCTGCATGCTGTCGATCCTACTACTG
131 AGAGACAGATGCACAAGCCGGGGATCGGCCCAGTCCCCCCCTGCATGCAGTCGATCCTACTACTG
28312626 G
196 G
* * *
28312627 TCCTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
28312692 AT-GGAATGAACTCCGTATGCCTCAGCCAACCCACGAAATGAGCGTAC-GGCTGCTCAACCGATC
66 -TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACAGG-TGCTCAACCGATC
** ** * *
28312755 GGAGAGGTAGAATGTGCAAGCCGGGGATTGGCCCAGT-CCCCCTTGCATGCAGTCGATC
129 GGAGAGACAG-ATGCACAAGCCGGGGATCGGCCCAGTCCCCCCCTGCATGCAGTCGATC
28312813 TTGCTACAGC
Statistics
Matches: 158, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
195 2 0.01
196 135 0.85
197 21 0.13
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (196 bp):
TCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACAGGTGCTCAACCGATCGG
AGAGACAGATGCACAAGCCGGGGATCGGCCCAGTCCCCCCCTGCATGCAGTCGATCCTACTACTG
G
Found at i:28312953 original size:158 final size:157
Alignment explanation
Indices: 28312685--28313838 Score: 534
Period size: 158 Copynumber: 7.2 Consensus size: 157
28312675 ACTCCGTATG
*
28312685 CTTAGACAT-GGAATGAACTCCGTATGCCTCAGCCAACCCACGAAATGAGCGTAC-GGCTGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGC-GCTCA
* * * * * * * * *
28312748 ACCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATTGGCCCAGTCCCCCTTGCATGCAGTCGATC
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGA-TCCCCCTTGCGTGCTGCCGATC
28312813 TTGCTACAGCAACCCTTGGTCCGTTCTGAT
128 TTGCTACAGCAACCCTTGGTCCGTTCTGAT
* * * * * *
28312843 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGTTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * * * * * *
28312908 CGACCGGAAAGGCATAATGCGTAAGCCGAGGATCGACTCGATCCCCTTCTGTGTGCTGCCGGTCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGATCCCCCT-TGCGTGCTGCCGATCT
* * * * **
28312973 CGCTACCA-CAACCCTCGATCCAGTT-GGGG
129 TGCTA-CAGCAACCCTTGGTCC-GTTCTGAT
* * * *
28313002 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * *
28313066 CTGGCCGGAGAGGCAGAATGCACAAGACGGGGATCGGCCCGGTTCCCCC-TACGTGCTGCCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CC-GATCCCCCTTGCGTGCTGCCGATC
* * * * *
28313130 CTGTTGCCGCAACCCTCT-GTCCGGTCTGAT
128 TTGCTACAGCAACCCT-TGGTCCGTTCTGAT
* * * * *** *
28313160 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGCGTGGGTGCTCAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA--
* * * * * *
28313225 CGGCCATAGAGGCCGGTCGAAGAGGCATAATGCACAAGCCTGGGATCAGCCCAGTCCTCCTATGC
64 --GCC---GA--CC-G--G-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCGA-TCCCCCT-TGC
* **** *
28313290 GTGCTGCCAATCTTGCT---GCCGGTCTTGCTACCACAG-TCTGACT
116 GTGCTGCCGATCTTGCTACAGCAACCCTTGGT--C-C-GTTCTGA-T
* ** *
28313333 GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGTGGGTGC
1 ----CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGC
* * * * * *
28313397 TCAACCAACTGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCCGAT-CCCCTGTGCGTGCTGTC
61 TCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATCCCCCT-TGCGTGCTG-C
* * * * * * *
28313461 C-ATCCTGCTACCGTAAACCTCGGTCCGATCCGAT
123 CGATCTTGCTACAGCAACCCTTGGTCCGTTCTGAT
* * * * * * *
28313495 CTTAGACTGGGAATGAACTTCC-TATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTGAG
1 CTTAGAATGGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* ** ** * *** * * * * * *
28313559 CTGGTCAAAGAGGCATAATGTTTAAGCCGAGGATCGGCCTGGTCCCCCTCTACGTACTACCGGT-
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GATCCCCCT-TGCGTGCTGCCGATC
* * * * **
28313623 TCTGCTGCCA-CAACCCTCGGTCTG-ACTGGGG
128 T-TGCT-ACAGCAACCCTTGGTCCGTTCT-GAT
* * * * *
28313654 CTTAGACAT-GGAATGAACTCCCTTTGCCTAAGCCAACCCATGGAACA-G-GCGTGCGGGTGCTC
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAA-ATGAGCGTACGGGCGCTC
** * * * * * *
28313716 AGCCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTTCCCCC-TGCATGCTGTCGA
63 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CC-GATCCCCCTTGCGTGCTGCCGA
* * * **
28313780 TCCTGCTACTGCAACCCTCGGTCCAATCTGAT
126 TCTTGCTACAGCAACCCTTGGTCCGTTCTGAT
* *
28313812 CTTAGATTGGGAATGAACTCCATATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
28313839 TTAGACATGG
Statistics
Matches: 739, Mismatches: 194, Indels: 126
0.70 0.18 0.12
Matches are distributed among these distances:
157 10 0.01
158 288 0.39
159 219 0.30
160 28 0.04
161 1 0.00
162 4 0.01
163 25 0.03
164 26 0.04
165 5 0.01
166 5 0.01
167 3 0.00
168 3 0.00
169 5 0.01
170 9 0.01
171 26 0.04
172 22 0.03
173 4 0.01
177 55 0.07
178 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCTTGCGTGCTGCCGATCTTG
CTACAGCAACCCTTGGTCCGTTCTGAT
Found at i:28320124 original size:26 final size:26
Alignment explanation
Indices: 28320095--28320147 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28320085 TCGATCCGAT
28320095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28320121 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28320147 C
1 C
28320148 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28320463 original size:158 final size:158
Alignment explanation
Indices: 28320133--28320430 Score: 352
Period size: 158 Copynumber: 1.9 Consensus size: 158
28320123 TAGACTGGGG
* * *
28320133 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTGAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGCCAACCGGAGAGG
* * * *
28320198 CATAATGCGTAAGACGGGGATTGGCCTGATCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAAC
66 CAAAATGCGCAAGACAGGGATTGGCCTGATCCCCCTCTGCGTGCTGCCAGTCCCGCAGCCACAAC
* * * *
28320263 CCTTGGTCTGGCTGGGGCTTGACATGGA
131 CCTCGGTCCGGCTCGAGCTTGACATGGA
* * * **
28320291 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGCCAACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGCCAACCGGAGAGG
* * * * *
28320356 CAAAATGCGCAAG-CTAGTGATTGG-CTCGGTCCCCC-CTGCGTGCTGTC-GATCCTGCAGCCGC
66 CAAAATGCGCAAGAC-AGGGATTGGCCT-GATCCCCCTCTGCGTGCTGCCAG-TCCCGCAGCCAC
28320417 AACCCTCGGTCCGG
128 AACCCTCGGTCCGG
28320431 TCCGATCTTA
Statistics
Matches: 118, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.01
157 35 0.30
158 82 0.69
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (158 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGCCAACCGGAGAGG
CAAAATGCGCAAGACAGGGATTGGCCTGATCCCCCTCTGCGTGCTGCCAGTCCCGCAGCCACAAC
CCTCGGTCCGGCTCGAGCTTGACATGGA
Found at i:28321100 original size:11 final size:11
Alignment explanation
Indices: 28321080--28321112 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
28321070 TCTGATGATA
*
28321080 CTCCGACGATG
1 CTCCGGCGATG
28321091 CTCCGGCGATG
1 CTCCGGCGATG
28321102 CTCCGGCGATG
1 CTCCGGCGATG
28321113 GTGCCCCAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.12, C:0.36, G:0.33, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:28321711 original size:25 final size:26
Alignment explanation
Indices: 28321677--28321728 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
28321667 CCAGTCCGAT
28321677 CTTAGATTGGGAATGAACT-CGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
28321702 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
28321728 C
1 C
28321729 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:28321858 original size:26 final size:26
Alignment explanation
Indices: 28321829--28321878 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
28321819 GTCCGATCTC
*
28321829 AGACTTGGAATGAACTCCGTATGCTT
1 AGACATGGAATGAACTCCGTATGCTT
28321855 AGACATGGAATGAACTCCGTATGC
1 AGACATGGAATGAACTCCGTATGC
28321879 CTCAATCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
AGACATGGAATGAACTCCGTATGCTT
Found at i:28323387 original size:158 final size:157
Alignment explanation
Indices: 28322896--28323696 Score: 675
Period size: 159 Copynumber: 5.1 Consensus size: 157
28322886 GCTTAGATAT
* * * * * *
28322896 GGAATGAACTTCGTATGCCTAAGCCAAACTACGAAACGAGCGT-CGGGCGCTCAGTCGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCACTCAGCCAGCCGAAG
* * * *
28322960 AGGCAAAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGTTGTCGATCCTGCTACCACA
66 AGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
* * * **
28323025 ACCCTTGGTTCAGTCTGATCTTAGGTTG
131 ACCC-TCGTTCGGTCCGATCTTAGACTG
* * * * * * ** * *
28323053 GGAATGAACTCCGTATGCATAAGTC-AACCTAAGAAATGAGCGTGCGAGCGCAGAGCC-GATCAA
1 GGAATGAACTCCGTATGCCTAAGCCAAACC-ATGAAACGAGCGTGCGGGCACTCAGCCAG-CCGA
* * * * * *
28323116 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCC
64 AGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCC
* ** **
28323181 ACAACCCTCGGTCTGGTTGGGGCTTAGACAT-
128 ACAACCCTCGTTC-GGTCCGATCTTAGAC-TG
* * * * *
28323212 GGAATGAACTCCCTATGCCTAAACCTATCCATGAAACCG-GCGTGC-GGCTACTCAGTCAGCCGA
1 GGAATGAACTCCGTATGCCTAAGCCAAACCATGAAA-CGAGCGTGCGGGC-ACTCAGCCAGCCGA
* * * ** *
28323275 AGAGGCAGCATGCGCAAGTCAGGGATTGGCCCAATCCCCCCTGCGTGCTGCCGATCCTGCTGCCA
64 AGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCA
28323340 CAACCCTCAGTTCGGTCCGATCTTAGACTG
129 CAACCCTC-GTTCGGTCCGATCTTAGACTG
* * * * * *
28323370 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACT-ATGCCAACCGTA
1 GGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCACTCA-GCCAGCCGAA
* * * * * * * *
28323434 GAGGCATAATGCACAAGCCGAGGATCGGCCCAGTCCCCCTCTGCGTGTTGTCGGTCCCGCTGCCA
65 GAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCA
* * * * * **
28323499 CAACGCTCGGTCCGACTGGGGCTTAGACAT-
129 CAACCCTCGTTCGGTC-CGATCTTAGAC-TG
* * * * *
28323529 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCAGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCACTCAGCCAGCCGAAG
* ** * * * **
28323594 AGGCAGAATGCGCAAGCCGGGGA-TGGCCTGGTCCCTTCTGCGTGCTGTAGATCCTGGTGTCGTA
66 AGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
*
28323658 ACCCTCGGTTCGATCCGATCTTAGACTG
131 ACCCTC-GTTCGGTCCGATCTTAGACTG
28323686 GGAATGAACTC
1 GGAATGAACTC
28323697 TATATGCTTA
Statistics
Matches: 503, Mismatches: 120, Indels: 42
0.76 0.18 0.06
Matches are distributed among these distances:
156 4 0.01
157 81 0.16
158 190 0.38
159 220 0.44
160 8 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCACTCAGCCAGCCGAAG
AGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
ACCCTCGTTCGGTCCGATCTTAGACTG
Found at i:28323521 original size:317 final size:317
Alignment explanation
Indices: 28322886--28323696 Score: 986
Period size: 317 Copynumber: 2.6 Consensus size: 317
28322876 AACTCCGTAT
* * * * * * * *
28322886 GCTTAGATATGGAATGAACTTCGTATGCCTAAGCCAAACTACGAAA-CGAGCGT-CGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACCG-GCGTGCGGGCACTCA
* * * *
28322949 GTCGGCCGAAGAGGCAAAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGTTGTCGATC
65 GTCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * * * **
28323014 CTGCTACCACAACCCTTGGTTCAGTCTGATCTTAGGTTGGGAATGAACTCCGTATGCATAAGTCA
130 CTGCTGCCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * * *
28323079 ACCTAAGAAATGAGCGTGCGAGCGCAGAGCCGATCAAAGAGGCATAATGCGCAAGCCGGGGATCG
195 ACCCAAGAAACGAGCGTGCGAGCGCAGAGCCAACCAAAGAGGCATAATGCACAAGCCGAGGATCG
* * * **
28323144 GCCCGGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGTTGGG
260 GCCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
* *
28323202 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCTATCCATGAAACCGGCGTGC-GGCTACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACCGGCGTGCGGGC-ACTCA
* * * ** *
28323266 GTCAGCCGAAGAGGCAGCATGCGCAAGTCAGGGATTGGCCCAATCCCCCCTGCGTGCTGCCGATC
65 GTCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
28323331 CTGCTGCCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
130 CTGCTGCCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * **
28323396 ACCCATGAAACGAGCGTTCG-G-GCACTATGCCAACCGTAGAGGCATAATGCACAAGCCGAGGAT
195 ACCCAAGAAACGAGCGTGCGAGCGCA-GA-GCCAACCAAAGAGGCATAATGCACAAGCCGAGGAT
* * *
28323459 CGGCCCAGTCCCCCTCTGCGTGTTGTCGGTCCCGCTGCCACAACGCTCGGTCCGACTGGG
258 CGGCCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
* * *
28323519 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACCGGCGTGCGGGCACTCAG
* * * ** *
28323584 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGA-TGGCCTGGTCCCTTCTGCGTGCTGTAGATCC
66 TCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * ** *
28323648 TGGTGTCGTAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTC
131 TGCTGCCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTC
28323697 TATATGCTTA
Statistics
Matches: 418, Mismatches: 71, Indels: 12
0.83 0.14 0.02
Matches are distributed among these distances:
315 3 0.01
316 113 0.27
317 299 0.72
318 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACCGGCGTGCGGGCACTCAG
TCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCAAGAAACGAGCGTGCGAGCGCAGAGCCAACCAAAGAGGCATAATGCACAAGCCGAGGATCGG
CCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:28323728 original size:26 final size:26
Alignment explanation
Indices: 28323677--28323729 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28323667 TCGATCCGAT
*
28323677 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
** *
28323703 CTTAGACTGGGGCTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28323729 C
1 C
28323730 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28324330 original size:11 final size:11
Alignment explanation
Indices: 28324316--28324341 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
28324306 ACTCTCCAGT
28324316 GATGCTCCGAC
1 GATGCTCCGAC
28324327 GATGCTCCGAC
1 GATGCTCCGAC
28324338 GATG
1 GATG
28324342 GTACCCCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:28324449 original size:26 final size:26
Alignment explanation
Indices: 28324411--28324463 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28324401 GGCTCAAACT
*
28324411 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
28324437 CTTAGACAT-GGAATGAACTCCGAATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
28324463 C
1 C
28324464 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:28324782 original size:26 final size:26
Alignment explanation
Indices: 28324753--28324805 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28324743 CCAATCCAAT
28324753 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28324779 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28324805 C
1 C
28324806 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28325153 original size:159 final size:157
Alignment explanation
Indices: 28324857--28326267 Score: 629
Period size: 159 Copynumber: 8.8 Consensus size: 157
28324847 TCGAAGAGGC
* * * * * * *
28324857 CGACCGGTGAGGCAGAATGCGCTAG-TCGGGGATCGATCTGGTCCCCC-CTACGTGCTGTCGATC
1 CGACCGGAGAGGCAGAATGCGCAAGCT-GGGGACCG-GCCGATCCCCCTCTACGTGCTATCGATC
** ** * * *
28324920 CTGCTACCACAACCCTTAGTCCGATCCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
64 CCACTACCACAACCCTCGGTCCG-GCTAGAGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTC
* * *
28324984 AACCCATGAAACGAGCATTCAGGTGCTAAGT
127 AACCCATGAAACGAGCATGCGGGCGCTAAGT
** * * *
28325015 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTCTGCGTGCTATC-AGTC
1 CGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCC-GATCCCCCTCTACGTGCTATCGA-TC
* * * * *
28325079 CCACTACCACAACCCTCGGTCCGGCTAGGGCTTACACATGGAATGAACTCCCTATTCCTAAGCCA
64 CCACTACCACAACCCTCGGTCCGGCTAGAGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCA
* *
28325144 ACCCATGAAACGGGCATGCGGGCGCTCAGT
128 ACCCATGAAACGAGCATGCGGGCGCTAAGT
** * * * *
28325174 CGGTCGGAGAGGTAGAATGCACAAGCTGGGGACCGACCCAGTCCCCC-CTACGTGCTATCGATCC
1 CGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCCGA-TCCCCCTCTACGTGCTATCGATCC
** * ** * * * *
28325238 TGCTGCCGTAACCCTCGATCCGGTCCA-ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
65 CACTACCACAACCCTCGGTCCGG-CTAGAGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCA
* * *
28325302 ACCCATTAAACGAGCGTGCGGGTGCTCAA--
128 ACCCATGAAACGAGCATGCGGGCGCT-AAGT
* * * ** *
28325331 CAGACCGGAGAGGCAGAATGCGCAAG-TCAGGGACCGGCCCGGTGCCTCCT-TGGGTGCTGTCGA
1 C-GACCGGAGAGGCAGAATGCGCAAGCT-GGGGACCGG-CCGAT-CCCCCTCTACGTGCTATCGA
* * * * * *
28325394 TCCTACTGCCACAACCCTCGGTCCGG-TCCGATCTTAGACTGAAAATGAACTTCGTATGCCTAAG
62 TCCCACTACCACAACCCTCGGTCCGGCT-AGAGCTTAGACTG-GAATGAACTCCGTATGCCTAAG
* * * * * *
28325458 TCAACCCACGAAATGAGCATTCGGGCACTGAGC
125 TCAACCCATGAAACGAGCATGCGGGCGCTAAGT
* * * * * * ** * **
28325491 CGACCGAAGAGGCATAATACGTAACCCGGGGATCAAGCCGATCCCCCTCTACGTGCTAAC-ATGT
1 CGACCGGAGAGGCAGAATGCGCAAGCTGGGGA-CCGGCCGATCCCCCTCTACGTGCTATCGATCC
* * * * * * *
28325555 CACTACCAGAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGAACTCTGTATGCCTAAGCCAA
65 CACTACCACAACCCTCGGTCCGGCTAGAGCTTAGA-CTGGAATGAACTCCGTATGCCTAAGTCAA
** * * *
28325620 CCCATGAAACGAGTGTGCGGGTGCTCAGC
129 CCCATGAAACGAGCATGCGGGCGCTAAGT
* ** * * *** * * * * *
28325649 CGACTGGAGAGAAAGAATACGAAAGCCAAGGATCGGCTTGGT-CCCCTCTGCGTGTTGCCATTCC
1 CGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGC-CGATCCCCCTCTAC--G-TG-C--T-A
* * * ** * * * *
28325713 TGCTGCAGGTCCTACTGCCGCAACCCTCATTCTGACTGGGGCTTAGACATGGAATGAACTCCGTA
58 T-C-G-A--TCCCACTACCACAACCCTCGGTCCGGCTAGAGCTTAGAC-TGGAATGAACTCCGTA
* * * * *
28325778 TGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAA-C
117 TGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCT-AAGT
* * * **** ** * *
28325819 CGGCCGGAGAAGCAGAATGCGCAAGCCGGGGATTACCTCGGCCCCCCTCT--GCGCATGTC-AGT
1 CGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGC-CGATCCCCCTCTACGTGC-TATCGA-T
* * * * * * *
28325881 CCCGCTACCACAACCCTCGATCCTGCTAGGGCTTAGACGTGGAATGGACTCCCTATGCCTAAGCC
63 CCCACTACCACAACCCTCGGTCCGGCTAGAGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
28325946 AACCCACGAAATGGGCGTACGGGCGCTCAG-
127 AACCCATGAAACGAGCATGCGGGCGCTAAGT
* ** ** * * *
28325976 CAGGCCGGAGAGGCAGAATGCATAAG-TCGGGGACCAACCCAGTCCCCC-CTTACGTACTGTCGA
1 C-GACCGGAGAGGCAGAATGCGCAAGCT-GGGGACCGGCCGA-TCCCCCTC-TACGTGCTATCGA
** * * * * *
28326039 TCCTGCTACCACAACCCTCGGTCTAGTCT-GATCTTAGACTGGGAATAAACTCTGTATGCCTAAG
62 TCCCACTACCACAACCCTCGGTC-CGGCTAGAGCTTAGACT-GGAATGAACTCCGTATGCCTAAG
* * *
28326103 TCAACCCATAAAATGAGCATGCGGGCGCTGAA-C
125 TCAACCCATGAAACGAGCATGCGGGCGCT-AAGT
* * * ** * * *
28326136 CGGCCAGAGAGGCATAATGCGCAAG-TCGGGGATTGGCCCGATCCCCCTC-AGCATGCTACCGGT
1 CGACCGGAGAGGCAGAATGCGCAAGCT-GGGGACCGG-CCGATCCCCCTCTA-CGTGCTATCGAT
** * * * * * * * * *
28326199 CCCGTTGCCACAAACCTTGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
63 CCCACTACCACAACCCTCGGTCCGGCTAGAGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTC
28326264 AACC
127 AACC
28326268 GACAAAATGG
Statistics
Matches: 947, Mismatches: 246, Indels: 119
0.72 0.19 0.09
Matches are distributed among these distances:
157 18 0.02
158 364 0.38
159 423 0.45
160 18 0.02
161 1 0.00
162 1 0.00
163 2 0.00
164 1 0.00
165 2 0.00
166 1 0.00
167 1 0.00
168 1 0.00
170 106 0.11
171 8 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCCGATCCCCCTCTACGTGCTATCGATCCC
ACTACCACAACCCTCGGTCCGGCTAGAGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACC
CATGAAACGAGCATGCGGGCGCTAAGT
Found at i:28325465 original size:317 final size:316
Alignment explanation
Indices: 28324897--28325470 Score: 721
Period size: 317 Copynumber: 1.8 Consensus size: 316
28324887 GATCGATCTG
* *
28324897 GTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTTAGTCCGATCCAATCTTAGACTGGGA
1 GTCCCCCCTACGTGCTATCGATCCTGCTACCACAACCCTGAGTCCGATCCAATCTTAGACTGGGA
* **
28324962 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTCAGGTGCTAAGTCGGTCGGAGAGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGTGCTAAG-CGACCGGAGAGG
* * * *
28325027 CATAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTCTGCGTGCTATCAGTCCCACTACCACAAC
130 CAGAATGCGCAAGCTAGGGACCGGCCCGATCCCCCTCTGCGTGCTATCAGTCCCACTACCACAAC
* * * *
28325092 CCTCGGTCCGGCTAGGGCTTACACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAACGG
195 CCTCGGTCCGGCTAGAGCTTACACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
28325157 GCATGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCACAAGCTGGGGACCGACCCA
260 GCATGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCACAAGCTGGGGACCGACCCA
* ** *
28325214 GTCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGA-TCCGGTCCAATCTTAGACTGGG
1 GTCCCCCCTACGTGCTATCGATCCTGCTACCACAACCCT-GAGTCCGATCCAATCTTAGACTGGG
* * * *
28325278 AATGAACTTCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGTGCTCAA-CAGACCGGAGA
65 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGTGCT-AAGC-GACCGGAGA
* * * * * *
28325342 GGCAGAATGCGCAAG-TCAGGGACCGGCCCGGTGCCTCCT-TGGGTGCTGTC-GATCCTACTGCC
128 GGCAGAATGCGCAAGCT-AGGGACCGGCCCGAT-CCCCCTCTGCGTGCTATCAG-TCCCACTACC
* * * * * *
28325404 ACAACCCTCGGTCCGG-TCCGATCTTAGAC-TGAAAATGAACTTCGTATGCCTAAGTCAACCCAC
190 ACAACCCTCGGTCCGGCT-AGAGCTTACACATG-AAATGAACTCCCTATGCCTAAGCCAACCCAC
28325467 GAAA
253 GAAA
28325471 TGAGCATTCG
Statistics
Matches: 216, Mismatches: 33, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
316 6 0.03
317 202 0.94
318 8 0.04
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (316 bp):
GTCCCCCCTACGTGCTATCGATCCTGCTACCACAACCCTGAGTCCGATCCAATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGTGCTAAGCGACCGGAGAGGC
AGAATGCGCAAGCTAGGGACCGGCCCGATCCCCCTCTGCGTGCTATCAGTCCCACTACCACAACC
CTCGGTCCGGCTAGAGCTTACACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
CATGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCACAAGCTGGGGACCGACCCA
Found at i:28326184 original size:317 final size:315
Alignment explanation
Indices: 28325754--28326414 Score: 718
Period size: 317 Copynumber: 2.1 Consensus size: 315
28325744 CTGACTGGGG
* * *
28325754 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCAAC
* * *
28325819 CGGCCGGAGAAGCAGAATGCGCAAGCCGGGGATTACCTCGGCCCCCCTCTGCGCATG-T-CAGTC
65 CGGCCAGAGAAGCAGAATGCGCAAGCCGGGGATTACCTCGACCCCCCTC--AGCATGCTACAGTC
* * * *
28325882 CCGCTACCACAACCCTCGATCCTGCTAGGGCTTAGACGTGGAATGGACTCCCTATGCCTAAGCCA
128 CCGCTACCACAAACCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
28325947 ACCCACGAAATGGGCGTACGGGCGCTCAGCAGGCCGGAGAGGCAGAATGCATAAGTCGGGGACCA
193 ACCCACAAAATGGACGTACAGGCACTCAACAGACCGGAGAGGCAGAATGCACAAGTCGGGGACCA
* * * * *
28326012 ACCCAGTCCCCCCTTACGTACTGTCGATCCTGCTACCACAACCCTCGGT-CTAGTCTGAT
258 ACACAGTCCCCCC-TACGTACTGCCGATCCTGCTACCACAACCCTCGATCCAATTC-GAT
* * * * * *
28326071 CTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCATAAAATGAGCATGCGGGCGCTGAAC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCAAC
* * * * * *
28326136 CGGCCAGAGAGGCATAATGCGCAAGTCGGGGATTGGCC-CGATCCCCCTCAGCATGCTACCGGTC
65 CGGCCAGAGAAGCAGAATGCGCAAGCCGGGGATT-ACCTCGACCCCCCTCAGCATGCTA-CAGTC
* * * * * * *
28326200 CCGTTGCCACAAACCTTGGTTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTACCACAAACCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * * *
28326265 ACCGACAAAATGGACGTGCAGGCACTCAACCGATCGGAGAGGTAGAATGCGCACGTCGGGGATCG
193 ACCCACAAAATGGACGTACAGGCACTCAACAGACCGGAGAGGCAGAATGCACAAGTCGGGGACCA
* * * * *
28326330 GCACGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCAATTCGAT
258 ACACAGTCCCCCCTACGTACTGCCGATCCTGCTACCACAACCCTCGATCCAATTCGAT
28326388 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
28326415 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 58, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
315 5 0.02
316 2 0.01
317 150 0.54
318 123 0.44
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (315 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCAACC
GGCCAGAGAAGCAGAATGCGCAAGCCGGGGATTACCTCGACCCCCCTCAGCATGCTACAGTCCCG
CTACCACAAACCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACAAAATGGACGTACAGGCACTCAACAGACCGGAGAGGCAGAATGCACAAGTCGGGGACCAACA
CAGTCCCCCCTACGTACTGCCGATCCTGCTACCACAACCCTCGATCCAATTCGAT
Found at i:28326433 original size:26 final size:26
Alignment explanation
Indices: 28326388--28326440 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28326378 CCAATTCGAT
28326388 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
28326414 CTTAGACTGGGGATGGACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28326440 C
1 C
28326441 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28326876 original size:501 final size:502
Alignment explanation
Indices: 28326047--28326970 Score: 1243
Period size: 501 Copynumber: 1.8 Consensus size: 502
28326037 GATCCTGCTA
*
28326047 CCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCAT
1 CCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCAT
* * * * * ***
28326112 AAAATGAGCATGCGGGCGCTGAACCGGCCAGAGAGGCATAATGCGCAAGTCGGGGATTGGCCCGA
66 AAAACGAGCATACAGGCGCTGAACCAGCCAGAGAGGCATAATGCACAAGTCGGGGATCAACCCGA
* ** * * * **
28326177 TCCCCCTCAGCATGCTACCGGTCCCGTTGCCACAAACCTTGGTTCGGTTGGGGCTTAGACATGGA
131 TCCCCCTCAGCATGCTACCAGTCCCACTGCCACAAACCTCGATCCGACTGGGGCTTAGACATGGA
* * *
28326242 ATGAACTCCCTATGCCTAAGCCAACCGACAAAATGGACGTGCAGGCACTCAACCGATCGGAGAGG
196 ATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGACGTACAGGCACTCAACCGACCGGAGAGG
* * *
28326307 TAGAATGCGCACGTCGGGGATCGGCACGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACC
261 TAGAATGCGCAAGTCGAGGATCGGCACGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACC
* **
28326372 CTCGATCCAAT-TCGATCTTAGACT-AGGAATGAACTCCGTATGCTTAGACTGGGGATGGACTCT
326 CTCGATCCAGTCT-GATCTTAGACTCA-GAATGAACTCCGTATGCTTAGACTGGGGATAAACTCT
* *
28326435 GTATGCCTAAGTCAAACCATGAAACGAGCGTGCGGGTGCTCAATTGACCGGAGAGGTCGGTTGGA
389 ATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGTGCTCAATTGACCGGAGAGGTCGGTTGGA
28326500 GAGGCAAAATGCGCAGAATGCGCTATCGATCCTGCTGCTGGTCCTACTG
454 GAGGCAAAATGCGCAGAATGCGCTATCGATCCTGCTGCTGGTCCTACTG
* *
28326549 CCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCAT
1 CCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCAT
* * * * *
28326614 GAAACGAGCGTACAGGCGCTGAGCCAGCCGGAGAGGCATAATGCACAAG-CTGGGATCAACCCGA
66 AAAACGAGCATACAGGCGCTGAACCAGCCAGAGAGGCATAATGCACAAGTCGGGGATCAACCCGA
* * * *
28326678 TCCCCCTCTAG-GTGCTGCCAGTCCCACTGTCACAACCCTCGATCCGACTGGGGCTTAGACATGG
131 TCCCCCTC-AGCATGCTACCAGTCCCACTGCCACAAACCTCGATCCGACTGGGGCTTAGACATGG
* * *
28326742 AATGAACTCCCTATGCCTAAGCCAACCCATGCAAAA-GG-CGTAC-GAGCGCTCAATCGGCCGGA
195 AATGAACTCCCTATGCCTAAGCCAACCCA--CAAAATGGACGTACAG-GCACTCAACCGACCGGA
* * * *
28326804 GAGGTAGAATGCGCAAG-CTGAGGATCGGCCCGGTCCTCTCTGCGTGCTATCGATCCTGCTGCCA
257 GAGGTAGAATGCGCAAGTC-GAGGATCGGCACGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCA
* * * *
28326868 CAACCCTCGGTCCGGTCTGATCTTAGATTCAGAATGAACTTCGTATGCTTAGACTGGGGATAAAC
321 CAACCCTCGATCCAGTCTGATCTTAGACTCAGAATGAACTCCGTATGCTTAGACTGGGGATAAAC
* * * *
28326933 TCTATATGCCTAAGTTAACCCACGATATGAGCGTGCGG
386 TCTATATGCCTAAGTCAAACCACGAAACGAGCGTGCGG
28326971 ACGCCCAACC
Statistics
Matches: 361, Mismatches: 54, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
500 2 0.01
501 246 0.68
502 108 0.30
503 5 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (502 bp):
CCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCAT
AAAACGAGCATACAGGCGCTGAACCAGCCAGAGAGGCATAATGCACAAGTCGGGGATCAACCCGA
TCCCCCTCAGCATGCTACCAGTCCCACTGCCACAAACCTCGATCCGACTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGACGTACAGGCACTCAACCGACCGGAGAGG
TAGAATGCGCAAGTCGAGGATCGGCACGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACC
CTCGATCCAGTCTGATCTTAGACTCAGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTAT
ATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGTGCTCAATTGACCGGAGAGGTCGGTTGGAGA
GGCAAAATGCGCAGAATGCGCTATCGATCCTGCTGCTGGTCCTACTG
Found at i:28326893 original size:158 final size:157
Alignment explanation
Indices: 28326540--28326894 Score: 362
Period size: 158 Copynumber: 2.2 Consensus size: 157
28326530 CCTGCTGCTG
***
28326540 GTCCTACTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAG
1 GTCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAG
* * * * *
28326605 TCAACCCATGAAACGAGCGTACAGGCGCTGAGCCAGCCGGAGAGGCATAATGCACAAGCTGGGAT
65 CCAACCCATGAAAAGAGCGTACAGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCTGGGAT
28326670 CAACCCGATCCCCCTCTAGGTGCTGCCA
130 CAACCCGATCCCCCTCTAGGTGCTGCCA
* * * * **
28326698 GTCCCACTGTCACAACCCTCGATCCGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
1 GTCCTACTGCCACAACCCTCGGTCCGTCT-GATCTTAGAC-TGGGAATGAACTCCCTATGCCTAA
* * * *
28326762 GCCAACCCATGCAAAAG-GCGTAC-GAGCGCTCAATCGGCCGGAGAGGTAGAATGCGCAAGCTGA
64 GCCAACCCATG-AAAAGAGCGTACAG-GCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCTG-
** * * **
28326825 GGATCGGCCCGGT-CCTCTCT-GCGTGCTATC-
126 GGATCAACCCGATCCCCCTCTAG-GTGCTGCCA
*
28326855 GATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGA
1 G-TCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGA
28326895 TTCAGAATGA
Statistics
Matches: 158, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
157 6 0.04
158 134 0.85
159 18 0.11
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (157 bp):
GTCCTACTGCCACAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAAAGAGCGTACAGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCTGGGATC
AACCCGATCCCCCTCTAGGTGCTGCCA
Found at i:28327950 original size:158 final size:159
Alignment explanation
Indices: 28327628--28327963 Score: 362
Period size: 158 Copynumber: 2.1 Consensus size: 159
28327618 ACTCCATATG
* * * * *
28327628 CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * *
28327693 CGGTCGGAGAGGTAGAATGCTCAAGCCGGGGATCGGCACGGTCCCCCTCTACGTGCTGTCGGTCC
66 CGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCACGGTCCCCCTCTACGTGCTGCCGATCC
* *
28327758 TACTGCCACAACCCTCGGTCTGGTTGGGT
131 TACTACCACAACCCTCGGTCTGGTTGGAT
* * * * *
28327787 -ATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAATG-GACATGCGGGCGCTTAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CATGCGGGCGCTCAG
* *
28327850 CCGG-CAGGAAAGGCAGAATGCGCCAGCCGGGGATCGGC-CAGGTCCCCC-CTGCGTGCTGCCGA
65 CCGGTC-GGAAAGGCAGAATGCGCAAGCCGGGGATCGGCAC-GGTCCCCCTCTACGTGCTGCCGA
* ** * *
28327912 TCCTGCTACCTTAACCCTCGAT-TCGGTTTGAT
128 TCCTACTACCACAACCCTCGGTCT-GGTTGGAT
28327944 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
28327964 TGTATGCTTA
Statistics
Matches: 146, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.01
157 38 0.26
158 107 0.73
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCACGGTCCCCCTCTACGTGCTGCCGATCC
TACTACCACAACCCTCGGTCTGGTTGGAT
Found at i:28327985 original size:26 final size:26
Alignment explanation
Indices: 28327944--28327996 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
28327934 TCGGTTTGAT
28327944 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
28327970 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACGTATG
28327996 C
1 C
28327997 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:28328498 original size:159 final size:158
Alignment explanation
Indices: 28328130--28328654 Score: 470
Period size: 158 Copynumber: 3.3 Consensus size: 158
28328120 GGTCCTGCTG
* * *
28328130 CCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * *
28328195 GAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGTCGAGGACTGACCCGG
66 GAAACGAGCGTGCGGGTGCTCAGCCAGTCAGAGAGGCAGAATGCACAAGCCGAGGACTGACCCGA
* **
28328260 TCCCCCCTACATGCTGTCGATCTTGCTA
131 TCCCCCCTACATGCTGCCGATCCCGCTA
* ** * *
28328288 TCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAT
1 CCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * ** *
28328353 GAAATGAGCGTGCGGGTGCTGAGCCAGTCA-AGGAGGTATAATGTGCAAGCCGGGGA-TCGACCC
66 GAAACGAGCGTGCGGGTGCTCAGCCAGTCAGA-GAGGCAGAATGCACAAGCCGAGGACT-GACCC
* *
28328416 GATCCCCCTCTACATGCTGCCGGTCCCGCTG
129 GATCCCCC-CTACATGCTGCCGATCCCGCTA
* * *
28328447 CCACAACCCTCAGTTCGG-CTGGGGT-TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACC
1 CCACAACCCTCAGTCCGGTCT--GATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACC
* * * * * * * ** * * * *
28328509 CACAAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTTGGGGATTGGCT
63 CACGAAACGAGCGTGCGGGTGCTCAGCCAGTCAGAGAGGCAGAATGCACAAGCCGAGGACTGACC
* * * * ** *
28328574 TGGTCCCCCCTTCGTGCT-CCGATCCTACTG
128 CGATCCCCCCTACATGCTGCCGATCCCGCTA
* * * *
28328604 TCGCAACCCTC-GATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CCACAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
28328655 TTAGACTGGG
Statistics
Matches: 294, Mismatches: 61, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 46 0.16
158 123 0.42
159 116 0.39
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGTGCTCAGCCAGTCAGAGAGGCAGAATGCACAAGCCGAGGACTGACCCGA
TCCCCCCTACATGCTGCCGATCCCGCTA
Found at i:28328657 original size:26 final size:26
Alignment explanation
Indices: 28328628--28328680 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28328618 CCGATCTGAT
28328628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28328654 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28328680 C
1 C
28328681 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28329402 original size:26 final size:26
Alignment explanation
Indices: 28329351--28329403 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
28329341 GGCTCAAACT
*
28329351 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28329377 CTTAGACAT-GGAATG-ACATCCATATG
1 CTTAGAC-TGGGAATGAAC-TCCATATG
28329403 C
1 C
28329404 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28329723 original size:26 final size:26
Alignment explanation
Indices: 28329694--28329744 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
28329684 CCGATCCGAT
28329694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28329720 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
28329745 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28330733 original size:26 final size:26
Alignment explanation
Indices: 28330695--28330747 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28330685 TCGGTCTGAT
*
28330695 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28330721 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
28330747 C
1 C
28330748 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28330965 original size:26 final size:26
Alignment explanation
Indices: 28330936--28330986 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
28330926 CCGATCTAAT
28330936 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
28330962 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
28330987 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:28331456 original size:26 final size:26
Alignment explanation
Indices: 28331427--28331479 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28331417 CTGATCCGAT
28331427 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28331453 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28331479 C
1 C
28331480 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28331720 original size:147 final size:147
Alignment explanation
Indices: 28331453--28331867 Score: 370
Period size: 147 Copynumber: 2.7 Consensus size: 147
28331443 ACTCCGTATG
* * * *
28331453 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCATC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
*
28331518 CGACTGCAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCTCCTACGTGCTATCGTAAC
66 CGACTGCAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCTCCTACGTGCTATCGTAAC
28331583 CTTCGATCCGGTCCGAT
131 CTTCGATCCGGTCCGAT
* * * * * *
28331600 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTAGGAAATGAGCTTTCGGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* ** * *
28331664 CCAGAC-GGAGAGGCATTATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CTCTACGTGCTGTCGA
65 CC-GACTGCAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCTC-CTACGTGC--T--A
* ** **
28331727 TCCCGATGCCACAACCCTCGATCCGGTTGGGG
124 T--CG-T-----AACCTTCGATCCGGTCCGAT
* * * * * * *
28331759 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * * *
28331824 CGACCGGAGAGGCAGAATGCACAAGCC-AGGATCAGCCCGGTCCC
66 CGACTGCAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCC
28331868 TCTTGCTTGC
Statistics
Matches: 214, Mismatches: 37, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
146 2 0.01
147 97 0.45
148 3 0.01
149 1 0.00
151 2 0.01
153 2 0.01
154 1 0.00
158 18 0.08
159 87 0.41
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (147 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
CGACTGCAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCTCCTACGTGCTATCGTAAC
CTTCGATCCGGTCCGAT
Found at i:28331935 original size:157 final size:159
Alignment explanation
Indices: 28331577--28331942 Score: 402
Period size: 159 Copynumber: 2.3 Consensus size: 159
28331567 TACGTGCTAT
* * * * *
28331577 CGTAACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAGG
1 CGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * ** * * *
28331642 AAATGAGCTTTCGGGCGCTAAGCCAGACGGAGAGGCATTATGCGCAAGCCGGGGATCGGCCCGGT
66 AAATGAGCGTGCAGGCACTAAGCCAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGT
*
28331707 CCCCCTCTACGTGCTGTCGATCCCGATGC
131 CCCCCTCTACGTGCTGTCGATCCCGATAC
** ** * *
28331736 CACAACCCTCGATCCGGT-TGGGGCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCA
1 CGTAACCCTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCA
* *
28331799 CGAAATGGGCGTGCAGGCACTCAGCC-GACCGGAGAGGCAGAATGCACAAGCC-AGGATCAGCCC
64 CGAAATGAGCGTGCAGGCACTAAGCCAGA-CGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCC
* * * *
28331862 GGTCCCTCT-TGCTTGCTGTCGAT-CCTACTAC
128 GGTCCCCCTCTACGTGCTGTCGATCCCGA-TAC
*
28331893 CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
28331943 TTAGACTAGG
Statistics
Matches: 167, Mismatches: 34, Indels: 14
0.78 0.16 0.07
Matches are distributed among these distances:
156 4 0.02
157 53 0.32
158 20 0.12
159 89 0.53
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (159 bp):
CGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAATGAGCGTGCAGGCACTAAGCCAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGT
CCCCCTCTACGTGCTGTCGATCCCGATAC
Found at i:28331945 original size:26 final size:26
Alignment explanation
Indices: 28331916--28331968 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28331906 CCGGTCTGAT
28331916 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
28331942 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
28331968 C
1 C
28331969 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:28332321 original size:170 final size:158
Alignment explanation
Indices: 28332137--28332507 Score: 404
Period size: 170 Copynumber: 2.3 Consensus size: 158
28332127 GCCTAGACAT
28332137 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCGA-CCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCGATCCGAA
* *
28332201 GAGGCAAAATACGCAAGCCGAGGATCAGCTCGATCCCCCCTGCATGTTGTCGATCCTGCTACTGG
66 -AGGCAAAATACGCAAGCCGAGGATCAGCCCGAT-CCCCC--C-TG-TGT-G---CTG-T-C-GA
* * * *
28332266 TCCTGCTACCGCAGCCCTCAGTTCG-GTCTGATCTTAGACTA
118 TCCTGCTACCGCAACCCTCAGTCCGATTC-AATCTTAGACTA
** * ** * *
28332307 GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTACGGGTGCTCAGCCGATCGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCGATCCGAA
* * * * * *
28332372 AGGTAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCCTGTTACCGCA
66 AGGCAAAATACGCAAGCCGAGGATCAGCCCGATCCCCCCTGTGTGCTGTCGATCCTGCTACCGCA
*
28332437 ACCCTCAGTCCGATTCAATCTTAGACTG
131 ACCCTCAGTCCGATTCAATCTTAGACTA
* *
28332465 GGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGT
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
28332508 GCGGGTGCTG
Statistics
Matches: 174, Mismatches: 25, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
158 71 0.41
159 3 0.02
160 1 0.01
161 3 0.02
164 1 0.01
165 3 0.02
166 2 0.01
167 1 0.01
169 5 0.03
170 80 0.46
171 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCGATCCGAA
AGGCAAAATACGCAAGCCGAGGATCAGCCCGATCCCCCCTGTGTGCTGTCGATCCTGCTACCGCA
ACCCTCAGTCCGATTCAATCTTAGACTA
Found at i:28332554 original size:158 final size:156
Alignment explanation
Indices: 28332266--28332792 Score: 477
Period size: 158 Copynumber: 3.3 Consensus size: 156
28332256 CTGCTACTGG
* * * * *
28332266 TCCTGCTACCGCAGCCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTACCGCAACCCTCAGTCCGCTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
28332331 CAACCCATAAAACGAGTGTACGGGTGCTCAGCCGATCGGAAAGGTAGAATGCGCAAGTCGAGGAT
65 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CGGGGAT
* *
28332396 CGGCCCGATCCCCCCTGTGTGCTGTCGA
129 CGGCCCGGTCCCCTCTGTGTGCTGTCGA
* * *
28332424 TCCTGTTACCGCAACCCTCAGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTACCGCAACCCTCAGTCCG-CTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
28332489 CAACACACGAAACGAGCGTGCGGGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCAGGGGAT
65 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGC-GGGGAT
* * *
28332554 CGGCTCGGTCCCTTTCTGTGTGCTGTCGG
129 CGGCCCGGTCCC-CTCTGTGTGCTGTCGA
* ** ** ** *
28332583 TCCCGCTACCATAACCCT-AGGTTTGGCT-AGGGCTTAGACAT-GGAATGAACTCCCTATGCCTA
1 TCCTGCTACCGCAACCCTCA-G-TCCGCTCA-ATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
** ** * * *
28332645 AGCCAACCCATGAAAC-AGGCGTGCAAGCACTTAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGG
62 AGCCAACCCATGAAACGA-GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CGG
* * ** **
28332709 GGATCAGCCTGGTCCCCTCTACGTGCTACCGA
125 GGATCGGCCCGGTCCCCTCTGTGTGCTGTCGA
** * *
28332741 TCCTGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTC
1 TCCTGCTACCGCAACCCTCAGTCCGCTC-AATCTTAGACTGGGAATGAACTC
28332793 TATGTGCTTA
Statistics
Matches: 292, Mismatches: 64, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 162 0.55
159 121 0.41
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
TCCTGCTACCGCAACCCTCAGTCCGCTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCGGGGATCG
GCCCGGTCCCCTCTGTGTGCTGTCGA
Found at i:28333853 original size:26 final size:26
Alignment explanation
Indices: 28333824--28333873 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
28333814 CCGATTCGAT
28333824 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28333850 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
28333874 AGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28334539 original size:26 final size:26
Alignment explanation
Indices: 28334510--28334562 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28334500 CTGGTCCGAT
28334510 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCGTATG
28334536 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGGATGAACTCCGTATG
28334562 C
1 C
28334563 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTATG
Found at i:28335108 original size:672 final size:675
Alignment explanation
Indices: 28334194--28335523 Score: 1586
Period size: 672 Copynumber: 2.0 Consensus size: 675
28334184 TAACCCTCAG
* * * * *
28334194 TTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCGACGAAATGAGCGTTCGGGTGCTGAGCC
1 TTAGACTAGGAATGAACTACGTATGCCTAAGTCAACCGACGAAAGGAGCATTCAGGTGCTAAGCC
* * * * *
28334259 GGTCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCAATCCCCCTCTGCATGCTGCTGGTCTC
66 GATCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCAATCCCCCTCTGCATGCTGCTGATCCC
*
28334324 ACTGCCAAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 ACTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * ** * * *
28334389 CCATGAAACTGGTGTGCGGGCACTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
196 CCACGAAACGGGCATGCGCGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCAGGGGATCGAC
* * * * * * * *
28334454 CTAGTTCCCCATGCATGCTACCGAT-CTTGTTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACT
261 CCAGTCCCCCATACATGCTACCGATAC-TGCTGTCGCAACACTCGATCCGATCCGATCTTAGACT
* * *
28334518 GGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
325 GGGAATGAACTCCGTATCCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * *
28334583 AACGTGCGGGCACTC-A-G-CT-A-GCCGGAGAGGCATAATGCACGAA-CCGGGGACCAACCC-G
390 AACGTACGGGCACTCAACGACTGACGCCAGAGAGGCATAATACAC-AAGCCGGGGA-CAACCCAG
* * * * * * *
28334641 ATCCCCCTCTGCGTGTTGCCGATTTCACTGTCGATCCTGCTGCCACAACCCTCGGTCTGGCTGGG
453 -CCCCCCTCTGCGTGCTGCCGATTCCACTGTCGATCCTGCTACCACAACCCTCGATCTGACTAGG
* * * * * *
28334706 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACTAACCGAGCGTGCGGGTGCTCAG
517 GCTTAGACATGGAATGAACTCTGTATGCCAAAACCAA-CCACAAAACGAGCATGCGGATGCTCAG
* * * *
28334771 CCTGCCGGAGAGCTAGAATACGCAAGCTGGGGACC-GACCCGATCCCCCCTATGTGCTGTCGATC
581 CCGGCCAGAGAGCTAGAATACGCAAGCCGGGGACCAG-CCCGATCCCCCCTATATGCTGTCGATC
28334835 CTACTATCGCAACCTTCATTTTGGTCCGATC
645 CTACTATCGCAACCTTCATTTTGGTCCGATC
* * *
28334866 TTAGACTAGGAATGAACT-CTGTATGCCTAGGTCAA-TGTATGAAAGGAGCATTCAGGTGCTAAG
1 TTAGACTAGGAATGAACTAC-GTATGCCTAAGTCAACCG-ACGAAAGGAGCATTCAGGTGCTAAG
* *** *
28334929 CCGATCGGAGAGGCATAATGCACAAGCCAGGGATCGACCTGGTCCCCCTCTGCATGCT-ATCGAT
64 CCGATCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCAATCCCCCTCTGCATGCTGCT-GAT
* *
28334993 CCCACTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
128 CCCACTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
** * * * *
28335058 AACCCACGAAACGGGCATGCGCGTGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGTAGGGGATC
193 AACCCACGAAACGGGCATGCGCGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCAGGGGATC
* * * * * * *
28335123 GGCCCGGTCCCCCCTACGTGCTATCGATACTGCTGTCGCAACACTTGATCCGATCTGATCTTAGA
258 GACCCAGTCCCCCATACATGCTACCGATACTGCTGTCGCAACACTCGATCCGATCCGATCTTAGA
* *
28335188 CTGGGAATGAACTCCGTATCCTTAGACTAGGGATGAACTTCGTATGCCTGAGTCAACCCACGAAA
323 CTGGGAATGAACTCCGTATCCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* ** *
28335253 CGAGCGTACGGGTGCTCAACCGACTGGAGAGGACGGCCAGAGAGGCATAATACACAAGCTGGGGA
388 CGAACGTACGGGCACTCAA-CGACT------GAC-GCCAGAGAGGCATAATACACAAGCCGGGGA
* * * * *
28335318 TAGCCCAGCCCCCCTCTGCGTGCTGTCGATTCCACTGTCGGTCTTGCTACCACAACCCTCGATCT
445 CAACCCAGCCCCCCTCTGCGTGCTGCCGATTCCACTGTCGATCCTGCTACCACAACCCTCGATCT
*
28335383 GACTAGGGCTTAGACATGGAATGAACTCTGTATGCCAAAACCAACCACAAAATGAGCATGCGGAT
510 GACTAGGGCTTAGACATGGAATGAACTCTGTATGCCAAAACCAACCACAAAACGAGCATGCGGAT
** * ** * ** *
28335448 GCTCAGCCGGTTAGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCGATCTGCCCTGTATGCTGT
575 GCTCAGCCGGCCAGAGAGCTAGAATACGCAAGCCGGGGACCAGCCCGATCCCCCCTATATGCTGT
28335513 CGATCCTACTA
640 CGATCCTACTA
28335524 CTGGTTCTAC
Statistics
Matches: 545, Mismatches: 93, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
671 3 0.01
672 338 0.62
673 2 0.00
675 1 0.00
676 2 0.00
683 78 0.14
684 96 0.18
685 25 0.05
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (675 bp):
TTAGACTAGGAATGAACTACGTATGCCTAAGTCAACCGACGAAAGGAGCATTCAGGTGCTAAGCC
GATCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCAATCCCCCTCTGCATGCTGCTGATCCC
ACTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCATGCGCGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCAGGGGATCGAC
CCAGTCCCCCATACATGCTACCGATACTGCTGTCGCAACACTCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATCCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
ACGTACGGGCACTCAACGACTGACGCCAGAGAGGCATAATACACAAGCCGGGGACAACCCAGCCC
CCCTCTGCGTGCTGCCGATTCCACTGTCGATCCTGCTACCACAACCCTCGATCTGACTAGGGCTT
AGACATGGAATGAACTCTGTATGCCAAAACCAACCACAAAACGAGCATGCGGATGCTCAGCCGGC
CAGAGAGCTAGAATACGCAAGCCGGGGACCAGCCCGATCCCCCCTATATGCTGTCGATCCTACTA
TCGCAACCTTCATTTTGGTCCGATC
Found at i:28335211 original size:26 final size:26
Alignment explanation
Indices: 28335182--28335232 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28335172 CCGATCTGAT
28335182 CTTAGACT-GGGAATGAACTCCGTATC
1 CTTAGACTAGGG-ATGAACTCCGTATC
*
28335208 CTTAGACTAGGGATGAACTTCGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
28335233 GCCTGAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATC
Found at i:28336064 original size:158 final size:153
Alignment explanation
Indices: 28335586--28336082 Score: 435
Period size: 158 Copynumber: 3.1 Consensus size: 153
28335576 ACTCCATATG
* *
28335586 CTTAGACATGGAATGAACTTCATATGCCTAAGCTAACCCACAAAATGAGCGTGCAGGCGCTTAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCTAACCCAGAAAA-GAGCGTGCAGG-GCTTAGC
* * * * * * *
28335651 CGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCGACCCGATCCCCCTTACGTGCTGTCGATCCT
63 CGATCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
* * * *
28335716 GCTACTGTAACCCTCAGTCTAGTCCT-AT
127 GCTGCCGTAACCCTCGGTC-CGT-CTGAT
** * * *
28335744 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAATGAGCGTGC-GGACGTTGAG
1 CTTAGACT-GGAATGAACTCCATATGCCTAAGCTAACCCA-GAAAAGAGCGTGCAGGGC-TT-AG
* * * * *
28335808 CTGATCGAAGAGGCATAATGCGCAAG-AGGGGATCGGCCCGGTCCCCCTCTACGCGCTGTCGGTC
62 CCGATCGGAGAGGCAGAATGCGCAAGCA-GGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATC
* * * * **
28335872 CCGCTGCCATAACCCTAGGTCCGACTGGGG
125 CTGCTGCCGTAACCCTCGGTCCGTCT-GAT
* * *
28335902 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCATGCAGGTGCTTAG
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCTAACCCA-GAAA-AGAGCGTGCAGG-GCTTAG
* * * * * *
28335966 CCGATCGGAGAGGCAGAATTCGGAAGCCAGGGATCGGTCTGGTCCCCCCTACGTACTATCGATCC
62 CCGATCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
*
28336031 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
126 TGCTGCCGTAACCCTCGGTCC-GTCTGAT
28336060 CTTAGACTGAGAATGAACTCCAT
1 CTTAGACTG-GAATGAACTCCAT
28336083 TTGCTTAGAC
Statistics
Matches: 267, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 24 0.09
158 209 0.78
159 29 0.11
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (153 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCTAACCCAGAAAAGAGCGTGCAGGGCTTAGCCGA
TCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTG
CCGTAACCCTCGGTCCGTCTGAT
Found at i:28336492 original size:26 final size:26
Alignment explanation
Indices: 28336454--28336506 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28336444 GGCTCAAAAT
28336454 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
*
28336480 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATAAACTTCGTATG
28336506 C
1 C
28336507 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:28336717 original size:26 final size:26
Alignment explanation
Indices: 28336649--28336720 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
28336639 TCGATCCGAT
*
28336649 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
28336675 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
* * *
28336701 CTTAGATTTGGGTTGAACTC
1 CTTAGACTGGGGATGAACTC
28336721 TGTGTGCCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:28337060 original size:171 final size:170
Alignment explanation
Indices: 28336725--28337156 Score: 462
Period size: 171 Copynumber: 2.5 Consensus size: 170
28336715 GAACTCTGTG
* * * * * * * *** * *
28336725 TGCCTAAGTCAACCCACGAAATGAGCGTACAGGCACTCAACCGACCGGAGAGGCATAATGCACAA
1 TGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGGTAGGAGAGGCAGAATGCGCAA
*
28336790 GCCGGGGATCAGCCTCG-TCCCC-CTCTACTGCTGTCAATCTCGCTGCTGGTCCTGCTGTCACAA
66 GCCGGGGATCGGCCT-GATCCCCTC-CTACTGCTGTCAATCTCGCTGCTGGTCCTGCTGTCACAA
* *** *
28336853 CCCTCGGTCCGGCTGGGGCCTAGACATGGAATGAACTCCGTA
129 CCCTCAGTCCGGCTCAAGCCTAGACATGGAATGAACTCCATA
* ** *
28336895 TGCCTAAGCCAACCCATGAAACGAATGTGCGGGCACTCAGCCGGTCA-GAGAGGCAGAATGCGTA
1 TGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGGT-AGGAGAGGCAGAATGCGCA
* **
28336959 AGCCGGGGATCGGCCTGATCCCCTCCTACGTGCTGTCAATC-CTGCTGCTGGTCTTGCTGTCGTA
65 AGCCGGGGATCGGCCTGATCCCCTCCTAC-TGCTGTCAATCTC-GCTGCTGGTCCTGCTGTCACA
* * *
28337023 ACCCTCAGTCTGG-TCCAATCTTAGAC-TGGGAATGAACTCCATA
128 ACCCTCAGTCCGGCT-CAAGCCTAGACAT-GGAATGAACTCCATA
* * *
28337066 TGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGTAGGAGAGGCAGAATGTGCAA
1 TGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGGTAGGAGAGGCAGAATGCGCAA
* *
28337131 GCCGGGGATCGACCCGATCCCCTCCT
66 GCCGGGGATCGGCCTGATCCCCTCCT
28337157 GCATGCTATT
Statistics
Matches: 219, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
169 1 0.00
170 77 0.35
171 141 0.64
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (170 bp):
TGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGGTAGGAGAGGCAGAATGCGCAA
GCCGGGGATCGGCCTGATCCCCTCCTACTGCTGTCAATCTCGCTGCTGGTCCTGCTGTCACAACC
CTCAGTCCGGCTCAAGCCTAGACATGGAATGAACTCCATA
Found at i:28337311 original size:159 final size:159
Alignment explanation
Indices: 28337013--28337299 Score: 376
Period size: 159 Copynumber: 1.8 Consensus size: 159
28337003 CTGCTGGTCT
* * * *
28337013 TGCTGTCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCAGTCTGATCCAATCTCAGACAGGGAATGAACTCCATATGCCTAAGCCAA
* ** * * *
28337078 CCCACGAAACGAGCATGCGGGCGCTCAGCCGGTAGGAGAGGCAGAATGTGCAAGCCGGGGATCGA
66 CCCACGAAACGAGCATACAAGCGCTCAGCCGATAGGACAGGCAGAATGCGCAAGCCGGGGATCGA
28337143 CCCGATCCCCTCCTGCATGCTATTGATCC
131 CCCGATCCCCTCCTGCATGCTATTGATCC
* * *
28337172 TGCTGTCGCAACCCTCGGTCTGATCCGATCTCAGACAGGGAATGAACTCCATATGCCTAAGTCAA
1 TGCTGTCGCAACCCTCAGTCTGATCCAATCTCAGACAGGGAATGAACTCCATATGCCTAAGCCAA
* * ** * * * * *
28337237 CCCACGGAATGAGTGTACAAGTGCTGAGCCGATCGGACAGGCATAATGCGCAAGTCGGGGATC
66 CCCACGAAACGAGCATACAAGCGCTCAGCCGATAGGACAGGCAGAATGCGCAAGCCGGGGATC
28337300 TGCCTGATCC
Statistics
Matches: 106, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
159 106 1.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
TGCTGTCGCAACCCTCAGTCTGATCCAATCTCAGACAGGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGAGCATACAAGCGCTCAGCCGATAGGACAGGCAGAATGCGCAAGCCGGGGATCGA
CCCGATCCCCTCCTGCATGCTATTGATCC
Found at i:28337330 original size:159 final size:159
Alignment explanation
Indices: 28337013--28337545 Score: 360
Period size: 159 Copynumber: 3.4 Consensus size: 159
28337003 CTGCTGGTCT
* * * *
28337013 TGCTGTCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCAGTCTGATCCAATCTCAGACAGGGAATGAACTCCATATGCCTAAGCCAA
* ** * * *
28337078 CCCACGAAACGAGCATGCGGGCGCTCAGCCGGTAGGAGAGGCAGAATGTGCAAGCCGGGGATCGA
66 CCCACGAAACGAGCATACAAGCGCTCAGCCGATAGGACAGGCAGAATGCGCAAGCCGGGGATCGA
* *
28337143 CCCGATCCCCTCCTGCATGCTATTGATCC
131 CCCGATCCCCTCCTGCATACTATCGATCC
* * *
28337172 TGCTGTCGCAACCCTCGGTCTGATCCGATCTCAGACAGGGAATGAACTCCATATGCCTAAGTCAA
1 TGCTGTCGCAACCCTCAGTCTGATCCAATCTCAGACAGGGAATGAACTCCATATGCCTAAGCCAA
* * ** * * * * *
28337237 CCCACGGAATGAGTGTACAAGTGCTGAGCCGATCGGACAGGCATAATGCGCAAGTCGGGGATCTG
66 CCCACGAAACGAGCATACAAGCGCTCAGCCGATAGGACAGGCAGAATGCGCAAGCCGGGGATC-G
* *
28337302 -CCTGAT-CCC-CCTGTACGTACTATCGATCC
130 ACCCGATCCCCTCCTG--CATACTATCGATCC
* ** * * **** * * *
28337331 CGCTACCACAAACCCTCAAT-TCGA-CTGGGGCTTAGACATGGAATGAACTCCATATGACTAAGC
1 TGCTGTCGC-AACCCTCAGTCT-GATC-CAATCTCAGACAGGGAATGAACTCCATATGCCTAAGC
* * * ** * ** ** * * * * *
28337394 CAACCCACGAAATGGGCACACGGGCACTCAATCGACCGAAGAGGCAGAATGCGTAACCCGAGGAT
63 CAACCCACGAAACGAGCATACAAGCGCTCAGCCGATAGGACAGGCAGAATGCGCAAGCCGGGGAT
* * * * **
28337459 TGACCCGATCCCC-CCTACGTGCTGCCGATCC
128 CGACCCGATCCCCTCCTGCATACTATCGATCC
* * * ** * *
28337490 TGCTATCGCAACCCTCGGTCTGGTCTGATCTTC-GACTGGGAATGAACTCCGTATGC
1 TGCTGTCGCAACCCTCAGTCTGATCCAATC-TCAGACAGGGAATGAACTCCATATGC
28337546 TCAGACTGGG
Statistics
Matches: 284, Mismatches: 79, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.01
158 33 0.12
159 150 0.53
160 91 0.32
161 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
TGCTGTCGCAACCCTCAGTCTGATCCAATCTCAGACAGGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGAGCATACAAGCGCTCAGCCGATAGGACAGGCAGAATGCGCAAGCCGGGGATCGA
CCCGATCCCCTCCTGCATACTATCGATCC
Found at i:28339284 original size:26 final size:26
Alignment explanation
Indices: 28339255--28339307 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28339245 GACTCAAAAT
*
28339255 CTTAGAC-TGGTACTGAACTCCATATG
1 CTTAGACATGG-AATGAACTCCATATG
*
28339281 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
28339307 C
1 C
28339308 CTAACCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:28339796 original size:26 final size:26
Alignment explanation
Indices: 28339755--28339806 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28339745 CTGGACCGAT
* *
28339755 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28339781 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28339807 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28341924 original size:185 final size:185
Alignment explanation
Indices: 28341710--28342081 Score: 478
Period size: 185 Copynumber: 2.0 Consensus size: 185
28341700 TCTGATTGGG
* * *
28341710 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGC-TAG
* * * ** * **
28341775 -CCAGCTGGAAAGGCAGAATGCGCAAGCTTAGGATCAG-CCTGGTCCCCCTTTACATGCTGCCGA
65 ACCAACCGGAAAGGCAGAATGCACAAGCCGAGGATCAGTCC-GATCCCCCCCTACATGCTGCCGA
* * *
28341838 TCCTGCTGCCACAAACCTCGCTCTAGTCTGATCATAGACTGGGAATGAACTCCGTAT
129 TCCTGCTACCACAAACCTCGCTCCAGTCCGATCATAGACTGGGAATGAACTCCGTAT
*
28341895 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCGA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTAGA
* * * * * * *
28341960 CCAACCGGAGAGGCAGAATGCATAAGCCGGGGATCGGTCCGATCCCCCCCTGCGTGCTGTCGATC
66 CCAACCGGAAAGGCAGAATGCACAAGCCGAGGATCAGTCCGATCCCCCCCTACATGCTGCCGATC
* * * *
28342025 CTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
131 CTGCTACCACAAACCTCGCTCCAGTCCGATCATAGACTGGGAATGAACTCCGTAT
28342080 GC
1 GC
28342082 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 2 0.01
185 155 0.97
186 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTAGA
CCAACCGGAAAGGCAGAATGCACAAGCCGAGGATCAGTCCGATCCCCCCCTACATGCTGCCGATC
CTGCTACCACAAACCTCGCTCCAGTCCGATCATAGACTGGGAATGAACTCCGTAT
Found at i:28342197 original size:159 final size:156
Alignment explanation
Indices: 28341896--28342398 Score: 528
Period size: 159 Copynumber: 3.2 Consensus size: 156
28341886 ACTCCGTATG
* * * *
28341896 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCGAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT--ACGGGCTTGAC
* * * * * *
28341961 CAACCGGAGAGGCAGAATGCATAAGCCGGGGATCGGTCCGATCCCCCCCTGCGTGCTGTCGATCC
64 CGACCAGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGT-CCCCCCTGCGTGCTGTCGATCC
* *
28342026 TGCTACCGCAACCCTCGGTCCAGTCCGAT
128 TGCTGCCACAACCCTCGGTCCAGTCCGAT
* *
28342055 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCATTGAC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC-TTGA-
* * * *
28342119 CCGACCAGAGAGGCATAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
63 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCC-CTGCGTGCTGTCGATC
* * * * **
28342184 CCGCTGCCACAACCCTCGGT-CTGGCTGGGG
127 CTGCTGCCACAACCCTCGGTCCAGTC-CGAT
* * * * * *
28342214 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC-TTGA-C
* * * * *
28342279 CGGCCAGAGAGGCAGAATGCACAAGCCGAGGATTGGCTCGGTCACCCCTGCATGCTGTCGATCCT
64 CGACCAGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* *
28342344 GCTGCCACAACCCTC-GACCCGATCCGAT
129 GCTGCCACAACCCTCGGTCCAG-TCCGAT
*
28342372 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
28342399 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 52, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
157 6 0.02
158 68 0.24
159 208 0.73
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCTTGACCG
ACCAGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCGGTCCAGTCCGAT
Done.