Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 300 of 402
Found at i:28342423 original size:26 final size:26
Alignment explanation
Indices: 28342372--28342424 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28342362 CCGATCCGAT
* *
28342372 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28342398 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28342424 C
1 C
28342425 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28348362 original size:26 final size:26
Alignment explanation
Indices: 28348333--28348385 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28348323 TCCAGTCCGA
*
28348333 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
28348359 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
28348385 C
1 C
28348386 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28354758 original size:26 final size:26
Alignment explanation
Indices: 28354720--28354772 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28354710 GGCTTAAAAT
*
28354720 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
28354746 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
28354772 C
1 C
28354773 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:28355190 original size:184 final size:170
Alignment explanation
Indices: 28355037--28355571 Score: 413
Period size: 170 Copynumber: 3.2 Consensus size: 170
28355027 CGCAAGTCGA
* * * * *
28355037 GGATCAACCCGGTCCCTCTCTACGTACTGTCGATCCCACT-ATCGGTACTGCTGCCACAACCCTC
1 GGATCAACCCGGTCCC-CCCTACGTACTATCGATCCCACTGCT-GGTACTGCTACCACAAACCTC
* *
28355101 GGTCTGG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTG
64 AGTCTGGTCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
* *
28355165 TACGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCTCAAGCCAG
128 TACGGGCACTCAGTCGACCGGAGAGGTAGAATGCTCAAGCCAG
* ** * *
28355208 GGATCAACCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCCTGCTACTACAAACCTCAG
1 GGATCAACCCGGTCCCCCCTACGTACTATCGATCCCACTGCTGGTACTGCTACCACAAACCTCAG
** * **
28355273 TCTGGTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGT
66 TCTGGTCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC
* * * *** **
28355338 GGGCACTCAGCCGATCGAAGATACAGAATG-TGCAAGCTGG
131 GGGCACTCAGTCGACCGGAGAGGTAGAATGCT-CAAGCCAG
** ** * * *
28355378 GGATCGGCCCTAT-CCCCCT-C-T-CTAT-G------CTG-TCGGT-CTCGCTGCGACAACCCTC
1 GGATCAACCCGGTCCCCCCTACGTACTATCGATCCCACTGCT-GGTACT-GCTACCACAAACCTC
* * * * *
28355430 GGTCCGG-CTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCG
64 AGTCTGGTCTGGG-CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
** * * * * *
28355494 CGCGGGCGCTTAG-CTGGCCGAAGAGGTAGAATGCGCAAGCCAG
128 TACGGGCACTCAGTC-GACCGGAGAGGTAGAATGCTCAAGCCAG
* * * * *
28355537 GGATCAGCCCGGTCCTCCCTATGTGCTGTCGATCC
1 GGATCAACCCGGTCCCCCCTACGTACTATCGATCC
28355572 TGTTGCCGCA
Statistics
Matches: 288, Mismatches: 59, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
158 7 0.02
159 108 0.38
160 5 0.02
162 1 0.00
163 3 0.01
164 1 0.00
165 1 0.00
166 4 0.01
167 1 0.00
168 1 0.00
169 7 0.02
170 130 0.45
171 19 0.07
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (170 bp):
GGATCAACCCGGTCCCCCCTACGTACTATCGATCCCACTGCTGGTACTGCTACCACAAACCTCAG
TCTGGTCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC
GGGCACTCAGTCGACCGGAGAGGTAGAATGCTCAAGCCAG
Found at i:28355532 original size:159 final size:166
Alignment explanation
Indices: 28355078--28355568 Score: 484
Period size: 159 Copynumber: 3.0 Consensus size: 166
28355068 GATCCCACTA
*
28355078 TCGGTACT-GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCC
1 TCGGT-CTCGCTGCCACAACCCTCGGTCTGGCTGGGACTTAGACATGGAATGAACTCCGTATGCC
* * * *
28355142 TAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAG-TCGGCCGGAGAGGTAGAATGCTCAAGCC
65 TAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCT-GGCCGAAGAGGTAGAATGCGCAAGCC
*
28355206 AGGGATCAACCCGGTCCCCCCTACGTGCTATCGATCCTGC
129 AGGGATCAACCCGATCCCCCCTACGTGCTATCGA--CTGC
* * * *
28355246 TGCTGGTC-CTGCTACTACAAACCTCAGTCTGGTCT--GATCTTAGACATGGAATGAACTCCGTA
1 T-C-GGTCTC-GCTGCCACAACCCTCGGTCTGG-CTGGGA-CTTAGACATGGAATGAACTCCGTA
* * * ** *** *
28355308 TGCCTAAGCCAACCCACGAAACGAGAGTGTGGGCACTCAGCCGATCGAAGATACAGAATGTGCAA
61 TGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCGCAA
** ** *
28355373 GCTGGGGATCGGCCCTAT-CCCCCT-C-T-CTAT-G-CTG-
126 GCCAGGGATCAACCCGATCCCCCCTACGTGCTATCGACTGC
* * *
28355407 TCGGTCTCGCTGCGACAACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCT
1 TCGGTCTCGCTGCCACAACCCTCGGTCTGGCTGGGACTTAGACATGGAATGAACTCCGTATGCCT
* * * * *
28355472 AAGCCAACCCACGAAATGGGCGCGCGGGCGCTTAGCTGGCCGAAGAGGTAGAATGCGCAAGCCAG
66 AAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCGCAAGCCAG
* * * * *
28355537 GGATCAGCCCGGTCCTCCCTATGTGCTGTCGA
131 GGATCAACCCGATCCCCCCTACGTGCTATCGA
28355569 TCCTGTTGCC
Statistics
Matches: 255, Mismatches: 52, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
158 2 0.01
159 108 0.42
160 9 0.04
161 1 0.00
162 4 0.02
163 3 0.01
164 1 0.00
165 1 0.00
166 4 0.02
167 1 0.00
168 2 0.01
169 9 0.04
170 108 0.42
171 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (166 bp):
TCGGTCTCGCTGCCACAACCCTCGGTCTGGCTGGGACTTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCGCAAGCCAG
GGATCAACCCGATCCCCCCTACGTGCTATCGACTGC
Found at i:28355630 original size:26 final size:26
Alignment explanation
Indices: 28355601--28355651 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
28355591 CCATTCCGAT
*
28355601 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28355627 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
28355652 CCCTAAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28356346 original size:26 final size:26
Alignment explanation
Indices: 28356310--28356362 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28356300 CTGATCCAAT
28356310 CTTAGACTGGGAACAAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
* **
28356336 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
28356362 C
1 C
28356363 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:28356717 original size:26 final size:26
Alignment explanation
Indices: 28356677--28356729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28356667 CTGGTCTGAT
*
28356677 CTTAGACTGGCAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
28356703 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCGTATG
28356729 C
1 C
28356730 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:28356859 original size:867 final size:866
Alignment explanation
Indices: 28355740--28358161 Score: 3043
Period size: 867 Copynumber: 2.8 Consensus size: 866
28355730 TGGGGATCGA
* ** * * * * *
28355740 CCCGATCCCC-CCTTACGTTCTGCCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGA
1 CCCGATCCCCTCC-TACGTGCTATCGATCCTGCTGCTCGTCTTGCTATCGCAACCCTCGGTCTGG
* *
28355804 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTA-GCCTAAGC
65 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* ** * * * *
28355868 CAACCCATGGAACGAACGTGCGGACG-TTCAGTCGGCCGGAGAGCTAGAATACGCAAGCTGGGGA
130 CAACCCATGAAACGAGTGTGCGGGCGCTT-AGCCGG-CGGAGAGCTAGAATGCACAAGCTGGGGA
* * * *
28355932 TCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGTAACCCTCGGTCCTGTCTGATCTTA
193 TCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCAGTCTGATCTTA
* ** *
28355997 GATTGGGAATGAACTTTGTATGCCTAATTCAACCCATGAAACGAGTGTTCGGGCACTGAGCCGGC
258 GACTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGGC
*
28356062 TAGAGAGGCATAATGCGAAAGTAGAGGATCAGCCCGGTGCCCCTCTGCGTGCTGCTAGTCCCGCT
323 TAGAGAGGCATAATGCGAAAGT-GAGGATCAGCCCGAT-CCCCTCTGCGTGCTGCTAGTCCCGCT
* * * * * * *
28356127 GCCATAACCCTCAGTTTGGTTAGGGCATAGACATGGAATGAACTCTCTATGCATAAGCCAACCCA
386 GCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCA
*
28356192 TGAAACGGGCGTGCGAGTGCTCTGTCAGTCTG-AGAGGCAGAATGCGCAAGTCGGGGATCGACTC
451 TGAAACGGGCGTGCGAGCGCTCTGTCAGTC-GAAGAGGCAGAATGCGCAAGTCGGGGATCGACTC
* *
28356256 GGTCCCCCCTGCGTGTTGCCGATCCTGCTGTCGCATCCCTCGGTCTGATCCAATCTTAGACTGGG
515 GGTCCCCCATGCGTGCTGCCGATCCTGCTGTCGCATCCCTCGGTCTGATCCAATCTTAGACTGGG
** *
28356321 AACAAACTCCGTATGCTTAGACTGGGGATTAACTCCGTATGCCAAAGTCAACCCATGAAATGAGC
580 AATGAACTCCGTATGCTTAGACTGGGGATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
* * * * *
28356386 ATGTGGGCGCTCAGCCGGTCGGAGACGCATAATGTGCAAGCCAGGGATCAGCCCCATCCCCCTTT
645 ATGCGGGCACTCAGCCGGCCGGAGACGCATAATGCGCAAGCCAGGGATCAACCCCATCCCCCTTT
** * * *
28356451 GGGTGCTGTCAAACCTGCTGCCAGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACAT
710 GCATGCTGTCAAACCCGCTGCCAGTCCTGCTACCACAACCCTCGGTCCGACTGGGCCTTAGACAT
* * *
28356516 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCAGCCAGAA
775 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCAACCAGAA
*
28356581 AGGTACAATGCGCAAGCTGGGGATTGG
840 AGGTACAATGCGCAAGCTGGGGATTAG
* * *
28356608 CCCGGTCCCC-CCTGCGTGCTATCGATCCTGCTGCTCGTCTTACTATCGCAACCCTCGGTCTGGT
1 CCCGATCCCCTCCTACGTGCTATCGATCCTGCTGCTCGTCTTGCTATCGCAACCCTCGGTCTGGT
* *
28356672 CTGATCTTAGACTGGCAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
66 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * *
28356737 AACCCATGAAACGAGTGTGCGGGCGCTTAGCCGGCAAGAAAGGTAGAATGCACAAGCTGGGGAT-
131 AACCCATGAAACGAGTGTGCGGGCGCTTAGCCGGC-GGAGAGCTAGAATGCACAAGCTGGGGATC
* * *
28356801 GGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTTGGTCCGGTCTGATCTTAGA
195 GGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGA
* *
28356866 CTGGGAATGAA-TGCCGTATGCCTAATTCAACCCATGAAACGAACATTCGGGCACTGAGCCGGCT
260 CTGGGAATGAACT-CCGTATGCCTAATTCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGGCT
* * * * * * * *
28356930 GGAGACGCATAATGCGCAAGCTGGGGATCAGCCCGATCCTTCTCTGCATGCTGCTGGTCCTGCTG
324 AGAGAGGCATAATGCGAAAG-TGAGGATCAGCCCGATCC-CCTCTGCGTGCTGCTAGTCCCGCTG
* * *
28356995 CCACAACCCTCGGTCCGGCTGGGGCTTAGACCTGGAATGAACTCCCTATGCATAAGCCAATCCAT
387 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCAT
* * * * * *
28357060 GAAACGGGCATGCGAGCGCTCTGTCAGTCGAAGAGTCAGAATACGCAAGCCAGGGATCGACTCGA
452 GAAACGGGCGTGCGAGCGCTCTGTCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGG
* * * * * *
28357125 TCCCCCGTACGTGCTGTCGATCCTACTGCCGCATCCCCCGGTCTGATCCAATCTTAGACTGGGAA
517 TCCCCCATGCGTGCTGCCGATCCTGCTGTCGCATCCCTCGGTCTGATCCAATCTTAGACTGGGAA
* * *
28357190 TGAACTCCGTATGCTTAGATTGGGGATTAACTCCGTATGCTTAAGTCAACCCATGAAATGAGCGT
582 TGAACTCCGTATGCTTAGACTGGGGATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCAT
* *
28357255 GCGGGCACTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAACCCCGTCCCCCTTTGC
647 GCGGGCACTCAGCCGGCCGGAGACGCATAATGCGCAAGCCAGGGATCAACCCCATCCCCCTTTGC
*
28357320 ATGCTGTCGAACCCGCTGCCAGTCCTGCTACCACAACCCTCGGTCCGACTGGGCCTTAGACATGG
712 ATGCTGTCAAACCCGCTGCCAGTCCTGCTACCACAACCCTCGGTCCGACTGGGCCTTAGACATGG
* * * *
28357385 AATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAACCAACCGGAGAG
777 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCAACCAGAAAG
*
28357450 GTAGAATGCGCAAGCTGGGGATTAG
842 GTACAATGCGCAAGCTGGGGATTAG
* * * * *
28357475 CCCGATCCCCTCTTACGTGCTGTCGATCCTGTTGCTCGTCTTGCTATTGCAACCCTTGGTCTGGT
1 CCCGATCCCCTCCTACGTGCTATCGATCCTGCTGCTCGTCTTGCTATCGCAACCCTCGGTCTGGT
*
28357540 CTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
66 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * ** * * * * *
28357605 CACCCATGAAACGAGCT-TGCAGGCGCTCCGCCGATCGGAGAGCCAGAATGCACAAAC-CGAGAT
131 AACCCATGAAACGAG-TGTGCGGGCGCTTAGCCG-GCGGAGAGCTAGAATGCACAAGCTGGGGAT
* * * * * *
28357668 CGGCCTGGTCCCCCTTGCGTGCTGTCGATCTTGCTACTGCAACCCTTGGTTCAGTCTGATCTTAG
194 CGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAG
* * * * * ** **
28357733 ACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGAGCTAGC-
259 ACTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGGCT
* * ** * * * *
28357797 CGAAGAGGCATAAT-CGTAAGTCGAGGATTGGCTCGATCCCCCTCTACGTGCTGCCAGTCCCACT
324 AG-AGAGGCATAATGCGAAAGT-GAGGATCAGCCCGAT-CCCCTCTGCGTGCTGCTAGTCCCGCT
* * *
28357861 ACCACAACCCTCGGTCTGGCTGGGGCTTCGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
386 GCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCA
* * * * * * * * *
28357926 TGAAACAGGCGTGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGTGTAAGTCGGGGATCGACTTG
451 TGAAACGGGCGTGCGAGCGCTCTGTCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACTCG
* * * * * * * *** * *
28357991 GTCCCTCATGCATGCTGCCGATCCTGCTGTTGTAAT-CCTCGATCCGGTATGATCTTAGATTGAG
516 GTCCCCCATGCGTGCTGCCGATCCTGCTGTCG-CATCCCTCGGTCTGATCCAATCTTAGACTGGG
* * * *
28358055 AATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGC
580 AATGAACTCCGTATGCTTAGACTGGGGATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
* * * * * * *
28358120 GTGCGGACGCTCAACCGACCAGAGAGGCA-AGATGCGCAAGCC
645 ATGCGGGCACTCAGCCGGCCGGAGACGCATA-ATGCGCAAGCC
28358162 GATTATCGAA
Statistics
Matches: 1332, Mismatches: 205, Indels: 35
0.85 0.13 0.02
Matches are distributed among these distances:
866 6 0.00
867 979 0.73
868 342 0.26
869 5 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (866 bp):
CCCGATCCCCTCCTACGTGCTATCGATCCTGCTGCTCGTCTTGCTATCGCAACCCTCGGTCTGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAACGAGTGTGCGGGCGCTTAGCCGGCGGAGAGCTAGAATGCACAAGCTGGGGATCG
GCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGGCTAG
AGAGGCATAATGCGAAAGTGAGGATCAGCCCGATCCCCTCTGCGTGCTGCTAGTCCCGCTGCCAC
AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAA
CGGGCGTGCGAGCGCTCTGTCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCCC
CCATGCGTGCTGCCGATCCTGCTGTCGCATCCCTCGGTCTGATCCAATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGGGATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGG
GCACTCAGCCGGCCGGAGACGCATAATGCGCAAGCCAGGGATCAACCCCATCCCCCTTTGCATGC
TGTCAAACCCGCTGCCAGTCCTGCTACCACAACCCTCGGTCCGACTGGGCCTTAGACATGGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCAACCAGAAAGGTAC
AATGCGCAAGCTGGGGATTAG
Found at i:28357060 original size:159 final size:157
Alignment explanation
Indices: 28356702--28357065 Score: 385
Period size: 157 Copynumber: 2.3 Consensus size: 157
28356692 AACTTCGTAT
* *** * *
28356702 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTTAG
1 GCTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACATGCGGGCACTGAG
* * * *
28356767 CCGGCAAGAAAGGTAGAATGCACAAGCTGGGGATGGCCCGATCCCCCCTGCGTGCTATCGATCCT
66 CCGGCAAGAAACGCAGAATGCACAAGCTGGGGATAGCCCGATCCCCCCTGCATGCTATCGATCCT
*
28356832 GCTACCACAACCCTTGGTCCGGTCTGA
131 GCTACCACAACCCTCGGTCCGGTCTGA
* ** *
28356859 TCTTAGA-CTGGGAATGAA-TGCCGTATGCCTAATTCAACCCATGAAACGAACATTCGGGCACTG
1 GCTTAGACCT-GGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAACGAACATGCGGGCACTG
** * * * * * *
28356922 AGCCGGCTGGAGACGCATAATGCGCAAGCTGGGGATCAGCCCGATCCTTCTCTGCATGCT-GCTG
64 AGCCGGCAAGAAACGCAGAATGCACAAGCTGGGGAT-AGCCCGATCC-CCCCTGCATGCTATC-G
* * *
28356986 GTCCTGCTGCCACAACCCTCGGTCCGG-CTGGG
126 ATCCTGCTACCACAACCCTCGGTCCGGTCT-GA
* * *
28357018 GCTTAGACCTGGAATGAACTCCCTATGCATAAGCCAATCCATGAAACG
1 GCTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
28357066 GGCATGCGAG
Statistics
Matches: 167, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 78 0.47
158 12 0.07
159 72 0.43
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACATGCGGGCACTGAG
CCGGCAAGAAACGCAGAATGCACAAGCTGGGGATAGCCCGATCCCCCCTGCATGCTATCGATCCT
GCTACCACAACCCTCGGTCCGGTCTGA
Found at i:28357213 original size:26 final size:26
Alignment explanation
Indices: 28357177--28357232 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
28357167 CTGATCCAAT
28357177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
28357203 CTTAGATTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28357229 CTTA
1 CTTA
28357233 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28358075 original size:26 final size:26
Alignment explanation
Indices: 28358044--28358096 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28358034 CCGGTATGAT
* *
28358044 CTTAGATTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
28358070 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
28358096 C
1 C
28358097 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:28358815 original size:26 final size:26
Alignment explanation
Indices: 28358779--28358831 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
28358769 GGCTCAAAAT
28358779 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28358805 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28358831 C
1 C
28358832 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28359369 original size:159 final size:158
Alignment explanation
Indices: 28359016--28359443 Score: 491
Period size: 159 Copynumber: 2.7 Consensus size: 158
28359006 CCCGTATGCC
* *
28359016 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
28359081 ACCAGAGAGGCAGAATGCGCAAGTCAGGGACCGACCCGGTCCCCCCTACATGCTATCGATCCTAC
66 ACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACATGCTATCGATCCTAC
* * * * *
28359146 CATCGCAACCCTCGGTTTGGTTCGATCT
131 CACCACAACCCTCGGTTCGGCTCGAGCT
* * * * * *
28359174 TACAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCACTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** *
28359238 GACCGGAGAGGCATAATGCGCAAG-CTGGGGATCGGCCCGATCCCCCTCTATGTGCTATCGGTCC
65 GACCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCCGATCCCCC-CTACATGCTATCGATCC
* * * *
28359302 TGCTACCACAACCCTCGGTTCGGCTGGGGCT
128 TACCACCACAACCCTCGGTTCGGCTCGAGCT
* * * *
28359333 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
*** * * *
28359398 GTAGGAGAGGTAGAATGCGCAAGTCGGGGATAGGCTCGATCCCCCC
66 ACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCC
28359444 GGCGTGCTGC
Statistics
Matches: 222, Mismatches: 43, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 93 0.42
159 125 0.56
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
ACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACATGCTATCGATCCTAC
CACCACAACCCTCGGTTCGGCTCGAGCT
Found at i:28360012 original size:156 final size:156
Alignment explanation
Indices: 28359712--28360071 Score: 357
Period size: 156 Copynumber: 2.3 Consensus size: 156
28359702 ACTCCGTATG
* * * *
28359712 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGGAACGAACGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACATACAGACGCTCAGC
* * **
28359777 AGGTCGGAGAGGTAGAATACGAAAGTCGGGGACCGACCCGGTCCCCCTTACGTGCTGTCGATCTT
66 AGGTCGGAGAGGCAGAATACGAAAGTCGGGGACCGACCCGGTCCCCCTTACGTGCTGCCGATCCC
* * *
28359842 GCTACCGCAGCCCTCGGTCCGATCAT
131 ACTACCACAACCCTCGGTCCGATCAT
* * * * *
28359868 CTTAGAC-TAGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGACGCTGAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACATACAGACGCTCAG
* * * * * * *
28359932 CTGG-CTGGAGAGGCATAATACGTAAGTCGGGGATCGACTCGG-CCCCCTCTGCGTGCTGCCGGT
65 CAGGTC-GGAGAGGCAGAATACGAAAGTCGGGGACCGACCCGGTCCCCCT-TACGTGCTGCCGAT
* * * ***
28359995 CCCACTGCCACAACCCTCGGTCGGGCTGGGG
128 CCCACTACCACAACCCTCGGTC-CGAT-CAT
** * *
28360026 CTTAGACATGGAATGAACTCCCTATGCCTAGGCCATCCCATGAAAC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAC
28360072 AGACGTGCGG
Statistics
Matches: 163, Mismatches: 35, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
155 8 0.05
156 114 0.70
157 2 0.01
158 38 0.23
159 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACATACAGACGCTCAGC
AGGTCGGAGAGGCAGAATACGAAAGTCGGGGACCGACCCGGTCCCCCTTACGTGCTGCCGATCCC
ACTACCACAACCCTCGGTCCGATCAT
Found at i:28360155 original size:695 final size:704
Alignment explanation
Indices: 28358777--28360263 Score: 1800
Period size: 695 Copynumber: 2.1 Consensus size: 704
28358767 GTGGCTCAAA
* *
28358777 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
28358842 CCATGAAACGAGCGTTCGGGCGCTCAATCGGTCGGAGAGGCCAGACGAAGAGGCAGAATGCGCAA
66 CCACGAAACGAGCGTGCGGGCACTCAATCGATCGGAAAGGCCAGACGAAGAGGCAGAATGCACAA
* *
28358907 GCCGGGGATCAGCCCAGTCACCCCTTACGTGCTACCATCCTACTGCTGGTCCTACTACCGCAACC
131 GCAGGGGATCAGCCCAGTCACCCCTTACGTGCTACCA--C-ACTCCTGG--CTA-TACCGCAACC
**
28358972 GTCAGTTCGGTGTGATCTTAGACTGGGAATGAACCCCGTATGCCTAGACATGGAATGAACTCCGT
190 GTCAGTTCGGTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAGACATGGAATGAACTCCGT
* * * * *
28359037 ATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCA
255 ATGCCTAAGCCAACCCATGAAACGAACGTACAGGCGCTCAGCAGACCAGAGAGGCAGAATACGAA
* ** *
28359102 AGTCAGGGACCGACCCGGTCCCCCCTACATGCTATCGATCCTACCATCGCAACCCTCGGTTTGGT
320 AGTCAGGGACCGACCCGGTCCCCCCTACATGCTATCGATCCTACCACCGCAACCCTCGGTTCCGA
* * * * *
28359167 TCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCAC
385 TCGATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACAC
* * * * *
28359232 TGAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTATGTGCTATC
450 TGAGCCGACCGGAGAGGCATAATACGCAAGCTGGGGATCGACCCGAGCCCCCTCTACGTGCTACC
**
28359297 GGTCCTGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
515 GGTCCCACTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
** * * * * * * *
28359362 GCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCGGTAGGAGAGGTAGAATGCGCAAGTCGGGG
580 GCCAACCCACGAAACAGACGTGCGGGCGCTCAACCGATAGGAGAGGTAGAATGAGCAAGCCGAGG
* * *
28359427 ATAGGCTCGATCCCCCCGGCGTGCTGCCGATCCTGCTATCGCAACCTTCAGTTCGGTTTG
645 ATAGGCCCGATCCCCCCGGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTTCGGTTCG
* *
28359487 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * *
28359552 CCACAAAACAAGCGTGCGGGCACTCAGTCGATCGGAAAGG-CTGACCGAAGAGGCATAATGCACA
66 CCACGAAACGAGCGTGCGGGCACTCAATCGATCGGAAAGGCCAGA-CGAAGAGGCAGAATGCACA
* * ** * *
28359616 AGTCAGGGG-TC-GACCCGGTCCCCCCTTGTGTGCTACCA-A-TCCT-G-T-TGCCGCAACCTTC
130 AG-CAGGGGATCAG-CCCAGTCACCCCTTACGTGCTACCACACTCCTGGCTATACCGCAACCGTC
* * * * *
28359674 -GGTCTGGTCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTAT
193 AGTTC-GGTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAGACATGGAATGAACTCCGTAT
* * ** * *
28359737 GCCTAAGCCAACCCATGGAACGAACGTACGGGCGCTCAGCAGGTCGGAGAGGTAGAATACGAAAG
257 GCCTAAGCCAACCCATGAAACGAACGTACAGGCGCTCAGCAGACCAGAGAGGCAGAATACGAAAG
* * * * * * * *
28359802 TCGGGGACCGACCCGGTCCCCCTTACGTGCTGTCGATCTTGCTACCGCAGCCCTCGG-TCCGATC
322 TCAGGGACCGACCCGGTCCCCCCTACATGCTATCGATCCTACCACCGCAACCCTCGGTTCCGATC
* ** ** *
28359866 -ATCTTAGACTAGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGACGCTG
387 GATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACACTG
* * * * * * *
28359930 AGCTGGCTGGAGAGGCATAATACGTAAG-TCGGGGATCGACTCG-GCCCCCTCTGCGTGCTGCCG
452 AGCCGACCGGAGAGGCATAATACGCAAGCT-GGGGATCGACCCGAGCCCCCTCTACGTGCTACCG
* *
28359993 GTCCCACTGCCACAACCCTCGG-TCGGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAG
516 GTCCCACTACCACAACCCTCGGTTC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * *
28360057 GCCATCCCATGAAACAGACGTGCGGGCGCTCAACCGATTGGAGAGGTAGAATGAGCAAGCCGAGG
580 GCCAACCCACGAAACAGACGTGCGGGCGCTCAACCGATAGGAGAGGTAGAATGAGCAAGCCGAGG
* *** * * *
28360122 A-ACGGCCCGGTCCCCCCTTTGTGCTGTCGATCCTGCTGTCGCAACCCTCATTTCGGTTCG
645 ATA-GGCCCGATCCCCCCGGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTTCGGTTCG
* * *
28360182 ATTTTAGACTGGGAATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
28360247 CCACGAAACGAGCGTGC
66 CCACGAAACGAGCGTGC
28360264 AGATGCTCAG
Statistics
Matches: 661, Mismatches: 109, Indels: 29
0.83 0.14 0.04
Matches are distributed among these distances:
694 3 0.00
695 249 0.38
696 87 0.13
697 4 0.01
698 145 0.22
699 23 0.03
701 1 0.00
704 1 0.00
705 3 0.00
706 1 0.00
709 4 0.01
710 135 0.20
711 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (704 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCACTCAATCGATCGGAAAGGCCAGACGAAGAGGCAGAATGCACAA
GCAGGGGATCAGCCCAGTCACCCCTTACGTGCTACCACACTCCTGGCTATACCGCAACCGTCAGT
TCGGTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCATGAAACGAACGTACAGGCGCTCAGCAGACCAGAGAGGCAGAATACGAAAGTCAG
GGACCGACCCGGTCCCCCCTACATGCTATCGATCCTACCACCGCAACCCTCGGTTCCGATCGATC
TTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACACTGAGCC
GACCGGAGAGGCATAATACGCAAGCTGGGGATCGACCCGAGCCCCCTCTACGTGCTACCGGTCCC
ACTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACAGACGTGCGGGCGCTCAACCGATAGGAGAGGTAGAATGAGCAAGCCGAGGATAGGC
CCGATCCCCCCGGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTTCGGTTCG
Found at i:28360235 original size:26 final size:26
Alignment explanation
Indices: 28360185--28360236 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28360175 CGGTTCGATT
*
28360185 TTAGACTGGGAATGAACTTCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
28360211 TTAGACTAGGG-ATGAACTCCGTATGC
1 TTAGACT-GGGAATGAACTCCATATGC
28360237 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:28361277 original size:26 final size:26
Alignment explanation
Indices: 28361248--28361300 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28361238 CCGGTTCAAT
28361248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28361274 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28361300 C
1 C
28361301 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28361772 original size:159 final size:159
Alignment explanation
Indices: 28361469--28361776 Score: 343
Period size: 159 Copynumber: 1.9 Consensus size: 159
28361459 AACTCCGTAT
* * *
28361469 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * ** *
28361534 TAGGTCGGAGAGGTAGAATGCGCAAGTCGAGGTTCGACCTGATCTCTCTCTACGTGCTGTCGGTC
66 TAGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCTGATCTCCCTCTACGTGCTACCGATC
* * *
28361599 CCGCTGCCATAACCCTCGGGCTGGCTGGG
131 CCACTACCACAACCCTCGGGCTGGCTGGG
* * ** **
28361628 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * *
28361693 TCGGCCGGAGAGGCAGAATGTGCAAG-CTGAGGATCGGCCTTGATC-CACCT-TGCGTGCTACCG
66 TAGGCCGGAGAGGCAGAATGCGCAAGTC-GAGGATCGACC-TGATCTC-CCTCTACGTGCTACCG
* *
28361755 ATCCTACTACCGCAACCCTCGG
128 ATCCCACTACCACAACCCTCGG
28361777 TCCAGTCCGA
Statistics
Matches: 121, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 1 0.01
159 113 0.93
160 7 0.06
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
TAGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCTGATCTCCCTCTACGTGCTACCGATC
CCACTACCACAACCCTCGGGCTGGCTGGG
Found at i:28367160 original size:26 final size:26
Alignment explanation
Indices: 28367110--28367162 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28367100 GTTGACTTAG
*
28367110 GCATACGGAGTTCATCCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
*
28367136 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCA-TCCCATATCTAA
28367162 G
1 G
28367163 ATCAGATCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:28367436 original size:159 final size:157
Alignment explanation
Indices: 28367231--28367641 Score: 379
Period size: 159 Copynumber: 2.6 Consensus size: 157
28367221 CTGGCTTGTG
* * * *
28367231 CATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGC-CTGTTCCATGGGTTGGCTTAGGCATAGG
1 CATTCTGCCTCTTTGACCAGCT-AGTGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATAGG
** * * *
28367295 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGAACCGGCAGTACGTA
64 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACGGCAGCAGAACCGACAGCACGCA
28367360 -GAGGGGGACCAGGCCGATCCTCGACTTAAA
129 CGA--GGGACCAGGCCGATCCTCGACTTAAA
* * * * *
28367390 CATTATGCCTCTTTGACCAGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATAGGA
1 CATTCTGCCTCTTTGACCAGCT-AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGG
** * * * * *
28367455 AGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCGAGGTTTACGGCAGCAGGATCGACAGCACGC
65 AGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTACGGCAGCAGAACCGACAGCACGC
* * * **
28367518 ACGAGGGATCGGGCCGATCCTCGGCTTACG
128 ACGAGGGACCAGGCCGATCCTCGACTTAAA
* * * * * * *
28367548 CATTCTACCTC--T--CCAGCTGGTTGAGCCCACACGTTCATTTCGTGGGTTGGCTTAGGCATAC
1 CATTCTGCCTCTTTGACCAGCTAG-T--GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAG
28367609 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
63 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
28367642 TGTGGCAGCA
Statistics
Matches: 200, Mismatches: 43, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
153 1 0.00
154 7 0.04
155 3 0.01
156 51 0.25
157 2 0.01
158 32 0.16
159 98 0.49
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.24
Consensus pattern (157 bp):
CATTCTGCCTCTTTGACCAGCTAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACGGCAGCAGAACCGACAGCACGCACG
AGGGACCAGGCCGATCCTCGACTTAAA
Found at i:28368311 original size:26 final size:26
Alignment explanation
Indices: 28368281--28368333 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28368271 GTTGGCTGAG
28368281 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
28368307 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
28368333 G
1 G
28368334 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:28368507 original size:26 final size:26
Alignment explanation
Indices: 28368477--28368529 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28368467 GTTGACTTAG
*
28368477 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
28368503 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
28368529 G
1 G
28368530 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:28368813 original size:159 final size:158
Alignment explanation
Indices: 28368503--28368845 Score: 422
Period size: 159 Copynumber: 2.2 Consensus size: 158
28368493 CCCAGTCTAA
* ** *
28368503 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAGTAGGATCAG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GGATCGAGGGTTGTGGCAGTAGGATCAG
* * *
28368566 CAGCACACAGGGGGGACCAGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCG
64 CAGCACACAGGAGGGACCAGGCTGATCCCCAGCTTACGCATTCTACCACTCCGATCGGCTGAGCG
* *
28368631 TTCGGACGCCCATTTCATGGGTTGGCTTAG
129 CTCGCACGCCCATTTCATGGGTTGGCTTAG
* * * * *
28368661 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGTAGTGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGTAGGATCAGCA
** * * * *
28368726 GCACGTAGAGAGGGACCGGGCTGATCCCCAGCTTGCGCATTCTACCACTCCGATCGGTTGAGTGC
66 GCACACAG-GAGGGACCAGGCTGATCCCCAGCTTACGCATTCTACCACTCCGATCGGCTGAGCGC
* * *
28368791 -CTGCACGCTCGTTTCGTGGGTTGGCTTAG
130 TC-GCACGCCCATTTCATGGGTTGGCTTAG
28368820 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
28368846 ACATATGGAG
Statistics
Matches: 156, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
157 3 0.02
158 54 0.35
159 99 0.63
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGTAGGATCAGCA
GCACACAGGAGGGACCAGGCTGATCCCCAGCTTACGCATTCTACCACTCCGATCGGCTGAGCGCT
CGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:28368857 original size:26 final size:25
Alignment explanation
Indices: 28368821--28368870 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
28368811 TTGGCTTAGG
28368821 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGTTCATTCCA-GTCTAAA
* *
28368847 CATATGGAGTTCATTCTAGTCTAA
1 CATACGGAGTTCATTCCAGTCTAA
28368871 GAGTTTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (25 bp):
CATACGGAGTTCATTCCAGTCTAAA
Found at i:28369901 original size:26 final size:26
Alignment explanation
Indices: 28369850--28369902 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28369840 GTTGGCTTAG
* *
28369850 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
28369876 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
28369902 G
1 G
28369903 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:28370780 original size:157 final size:158
Alignment explanation
Indices: 28370389--28370784 Score: 386
Period size: 157 Copynumber: 2.5 Consensus size: 158
28370379 CCGCCTCCCG
* * * *
28370389 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCCTTCCATGTCTAAGCCCCAGCCAAACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATA-AGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * * * * *
28370454 ATGGTAACTGGACCAGCAGCATGTAGAGGGGGACCGGGGCCGATCCCCGGCTTGCGCATTATGCT
65 GTGGTAGCAGGACCAGCAGCACGTA-AGGGGGACCGGGGCCCATCCCCGGCTTACGCATTATGCC
* * * *
28370519 TCTTCGATCGGCTCAGCACCCGCACGCTCG
129 TCTCCGATCGGCTCAACACCCGCACGCACA
* * * * **** *
28370549 TTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATTAAACCAGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATAAG-AGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGT
** * * * * *
28370613 TGCCGCAGCAGGATC-GATAGCACGT-AGGGGGACC-GGGCCCATCCCCGGCTTACGTATTCTGC
64 TGTGGTAGCAGGACCAG-CAGCACGTAAGGGGGACCGGGGCCCATCCCCGGCTTACGCATTATGC
* * **
28370675 CTCTCCGATCGGTTGAATGCCCGCACGCACA
128 CTCTCCGATCGGCTCAACACCCGCACGCACA
*
28370706 TTTTATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATA-AGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
28370771 GTGGTAGCAGGACC
65 GTGGTAGCAGGACC
28370785 GACAGCGCGA
Statistics
Matches: 185, Mismatches: 46, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.02
157 105 0.57
158 10 0.05
159 2 0.01
160 62 0.34
161 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATAAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
TGGTAGCAGGACCAGCAGCACGTAAGGGGGACCGGGGCCCATCCCCGGCTTACGCATTATGCCTC
TCCGATCGGCTCAACACCCGCACGCACA
Found at i:28371370 original size:671 final size:669
Alignment explanation
Indices: 28369984--28371415 Score: 1682
Period size: 671 Copynumber: 2.1 Consensus size: 669
28369974 TGATCCCTGG
* * * * * * *
28369984 CTTACGCATTCTGCCCCTCCGACCAGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTAGCTTAGGC
1 CTTACACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* * ** * **
28370049 ATACGGAGTTCATTCCAAGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAACAGGACCGGTAGC
66 ATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAGGACCGACAGC
* * * *
28370114 GAGATCGACAGTATGCAGAGGGGGATCGAGCTGATCCTCGACTTGCGCATTATGCCCTTCGGCCA
131 GAGATCGACAGCAGGCAGAGGGGGACCGAGCTGATCCTCGACTTGCACATTATGCCCTT------
* * * * *
28370179 ACCTTTTCGGCCGACTACGCGTCCGCGCACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
190 -CC-TTCCGGCCGACTACGCGCCCGCACACTCATTTCATGGGTTGACTTAGACATACGAAGTTCA
* * * * ** *
28370244 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAGGATCGGATCGAGTGTTGCGGTAATAGA
253 TCCCCAGTCTAAGCAGACGGAGTTCATTCCCAGTGTAGGACCGGACCGAGGGTTGCGACAACAGA
** * * *
28370309 TCGGTAGCAAGTAAGGGGGATCGAGCCGATCCTCGGCCTGCGCATTCTGCCTCTCCTGCTGGCTG
318 TCGACAGCAAGCAAGGGGGACCGAGCCGATCCTCGGCCTGCGCATTCTGCCTCTCCTGATGGCTG
* * *
28370374 ACCACCCGCCTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCCTTCCATGTCTAAGCCCCA
383 ACCACCCGACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * *
28370439 GCCAAACCGAGGGTTATGGTAACTGGACCAGCAGCATGTAGAGGGGGACCGGGGCCGATCCCCGG
448 GCCAAACCGAAGGTTATGGCAACGGGACCAGCAGCATGCAGAGGGGGACCGGGGCCGATCCCCGG
* * *
28370504 CTTGCGCATTATGCTTCTTCGATCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGC
513 CTTGCGCATTATGCTTCTTCGACCGGCTCAGCACCCACACGCTCGTTTCATGGGTTGACTTATGC
* * * * *
28370569 ATACGAAGTTCATTCCCAGTCTAAGATTAAACCAGACCGAGGGTTGCCGCAGCAGGATCGATAGC
578 ATACGAAGTTCACTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGATAGACAGC
* *
28370634 ACGTAGGGGGACCGGGCCCATCCCCGG
643 ACGCAGGGGGACCGGGCCCATCCCCGA
** * ** * **
28370661 CTTACGTATTCTGCCTCTCCGATCGGTTGAATGCCCGCACGCACATTTTATGGGTTGGCTTAGGC
1 CTTACACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* * *
28370726 ATATAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAGC
66 ATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAGGACCGACAGC
* ** * *
28370791 GCGATCGGTAGCAGGCAGAGGGGGACCGGGCTGATCC-CGTCTTGCACATTATG-CC-T-C-TCC
131 GAGATCGACAGCAGGCAGAGGGGGACCGAGCTGATCCTCGACTTGCACATTATGCCCTTCCTTCC
*
28370851 GGTCGACTGA-GCGCCCGCACACTCATTTCATGGGTTGACTTAGACATACGAAGTTCATCCCCAG
196 GGCCGACT-ACGCGCCCGCACACTCATTTCATGGGTTGACTTAGACATACGAAGTTCATCCCCAG
* * *
28370915 TCTAAGCAGATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGAT
260 TCTAAGCAGACGGAGTTCATTCCCAG--T--G-TAGGACCGGACCGAGGGTTGCGACAACA-GAT
* * * *
28370980 CGACAGCACGCAGGGGGGACC-AGGCCGATTCC-CGGCTTGCGCATTCTGCCTCTCC-GATCGGT
319 CGACAGCAAGCAAGGGGGACCGA-GCCGA-TCCTCGGCCTGCGCATTCTGCCTCTCCTGAT-GGC
* * *
28371042 TGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCT
381 TGACCACCCG-ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * ** ** * *
28371107 CGAGTCGGATTGAAGGTTGTGGCAACGGGACCGGCAGCATGCAGAGGGGGACC-GGGCCGATCCC
445 CCAGCCAAACCGAAGGTTATGGCAACGGGACCAGCAGCATGCAGAGGGGGACCGGGGCCGATCCC
* * *
28371171 CGGCTTGCGCATTATGCCTT-TTCGGCCGGTTCAGCACCCACACGCTCGTTTCATTGGTTGACTT
510 CGGCTTGCGCATTATG-CTTCTTCGACCGGCTCAGCACCCACACGCTCGTTTCATGGGTTGACTT
* ** * * *
28371235 ATGCATACCG-AGTTCACTCTCAGTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGCAGGATAG
574 ATGCATA-CGAAGTTCACTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGATAG
*
28371299 ACAGCACGCACGGGGGACCGGGCCGATCCCCGA
638 ACAGCACGCA-GGGGGACCGGGCCCATCCCCGA
* *
28371332 CTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTAGGTTGGCTTAGGC
1 CTTACACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
*
28371397 ATACAAAGTTCATTCCATG
66 ATACAGAGTTCATTCCATG
28371416 CGTAAGCATA
Statistics
Matches: 634, Mismatches: 107, Indels: 34
0.82 0.14 0.04
Matches are distributed among these distances:
664 83 0.13
665 1 0.00
666 2 0.00
668 1 0.00
669 23 0.04
670 179 0.28
671 191 0.30
674 1 0.00
675 2 0.00
676 14 0.02
677 137 0.22
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (669 bp):
CTTACACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
ATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAGGACCGACAGC
GAGATCGACAGCAGGCAGAGGGGGACCGAGCTGATCCTCGACTTGCACATTATGCCCTTCCTTCC
GGCCGACTACGCGCCCGCACACTCATTTCATGGGTTGACTTAGACATACGAAGTTCATCCCCAGT
CTAAGCAGACGGAGTTCATTCCCAGTGTAGGACCGGACCGAGGGTTGCGACAACAGATCGACAGC
AAGCAAGGGGGACCGAGCCGATCCTCGGCCTGCGCATTCTGCCTCTCCTGATGGCTGACCACCCG
ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
GAAGGTTATGGCAACGGGACCAGCAGCATGCAGAGGGGGACCGGGGCCGATCCCCGGCTTGCGCA
TTATGCTTCTTCGACCGGCTCAGCACCCACACGCTCGTTTCATGGGTTGACTTATGCATACGAAG
TTCACTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGATAGACAGCACGCAGGG
GGACCGGGCCCATCCCCGA
Found at i:28371388 original size:158 final size:156
Alignment explanation
Indices: 28370927--28371413 Score: 535
Period size: 158 Copynumber: 3.1 Consensus size: 156
28370917 TAAGCAGATG
* *
28370927 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
1 GAGTTCATT-CCAGTCTAAGATCGGATCGGATCGAGGGTTGCG-CAGCAGGATCGACAGCACGCA
* * * *
28370992 GGGGGGACCAGGCCGATTCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGTACGC
64 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGC
* * **
28371057 CCGTTTCGTGGGTTGGCTTAGGCATAGG
129 TCGTTTCGTAGGTTGGCTTAGGCATACC
* * * * * * * * *
28371085 GAGTTCATTCCATGTCTAAGCTC-GAGTCGGATTGAAGGTTGTGGCAACGGGACCGGCAGCATGC
1 GAGTTCATTCCA-GTCTAAGATCGGA-TCGGATCGAGGGTTG-CGCAGCAGGATCGACAGCACGC
* * * ** * * *
28371149 AGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGGCCGGTTCAGCACCCACAC
63 A-AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCAC
* * * *
28371214 GCTCGTTTCATTGGTTGACTTATGCATACC
127 GCTCGTTTCGTAGGTTGGCTTAGGCATACC
* *
28371244 GAGTTCACTCTCAGTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGCAGGATAGACAGCACGCA
1 GAGTTCATTC-CAGTCTAAGATCGGATCGGATCGAGGGTTGC-GCAGCAGGATCGACAGCACGCA
* * * *
28371309 CGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC
64 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGC
* *
28371374 TCATTTCGTAGGTTGGCTTAGGCATACA
129 TCGTTTCGTAGGTTGGCTTAGGCATACC
*
28371402 AAGTTCATTCCA
1 GAGTTCATTCCA
28371414 TGCGTAAGCA
Statistics
Matches: 261, Mismatches: 61, Indels: 15
0.77 0.18 0.04
Matches are distributed among these distances:
157 7 0.03
158 128 0.49
159 122 0.47
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (156 bp):
GAGTTCATTCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGCAGCAGGATCGACAGCACGCAAG
GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTC
GTTTCGTAGGTTGGCTTAGGCATACC
Found at i:28372139 original size:26 final size:26
Alignment explanation
Indices: 28372103--28372155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28372093 GTTAACTTAG
*
28372103 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
28372129 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
28372155 G
1 G
28372156 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:28372604 original size:158 final size:156
Alignment explanation
Indices: 28372129--28372630 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 156
28372119 CCCAGTCTAA
* * * * ** *
28372129 GCATATGGAGTTCATTCCCA-ATCTAAGATCGGACCAGACCGAGGGTTGCAGAAATAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTG-TGAAGCAGGATCGAC
* * * *
28372193 AGCACGTAGGGTGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGC
64 AGCACGTAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
28372258 TCGCATGCCTGTTTCGTGGGTTGGCTTAG
129 CCGCATG-CTATTTCGTGGGTTGGCTTAG
* * * ** * * * * *
28372287 ACATA-GGTAGTTCATTCCATGTGTACGCCCCA-ACCAGACCAAGGATTGTGGCAGCGGGACCGA
1 GCATACGG-AGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGT-GAAGCAGGATCGA
* * * ** * * * * *
28372350 CAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTATGCATTATGCTTATCCGGTCGGCTCAGC
63 CAGCACGTAG-GGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * **
28372415 ACCCGCACGCTCATTTCGTGGGTTAACTTAG
127 GCCCGCATGCT-ATTTCGTGGGTTGGCTTAG
*
28372446 GCATACGGAGTTCATTTCCA-GTCTAAGATCAGACCAGACTGAGGGTTGTGATAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGA-AGCAGGATCGAC
* * * *
28372510 AGCACGTAGGGGGGATCAGGTCAATCCTCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGC
64 AGCACGTAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
*
28372575 CCGCATGCTAATTTCGTGGGTTGGTTTAG
129 CCGCATGCT-ATTTCGTGGGTTGGCTTAG
28372604 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
28372631 CATACAGAGT
Statistics
Matches: 266, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 10 0.04
158 138 0.52
159 111 0.42
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGAAGCAGGATCGACAG
CACGTAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCATGCTATTTCGTGGGTTGGCTTAG
Found at i:28372633 original size:26 final size:26
Alignment explanation
Indices: 28372604--28372656 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28372594 GTTGGTTTAG
*
28372604 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
28372630 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
28372656 G
1 G
28372657 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:28373408 original size:158 final size:158
Alignment explanation
Indices: 28372932--28373473 Score: 497
Period size: 158 Copynumber: 3.4 Consensus size: 158
28372922 TCTTCGACTG
* * ** * * * *
28372932 GCCTCTCCGGTCGGCTGAGCGCTCGTGCGCTCATTTCATGGGTTGACTTA-GACATACGGAGTTC
1 GCCTCTTCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTCACTTATG-CATACGGAGTTC
* * * *
28372996 ATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAAGATCGACAGCACGTAGGGGGA
65 ATTCCCAGTCTAAGCTCAGATCGAATCGAGGGTTGTGGCAGCAAGATCGACAGCACGTAGGGGGG
* *** * * *
28373061 ACCGAATCAATCCTCAGCTTGTGCATTCT
130 ACTGGGCCGATCCCCAGCTTGCGCATTCT
* * * * * * * *
28373090 GCCTCTCCGGCCGACTGAGCGCCCACACACCCTTTTCATGGGTTCAC-T-T-CATAGGGAGTTCA
1 GCCTCTTCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTCACTTATGCATACGGAGTTCA
* * * * * *
28373152 TT-CCATGTCTAAGCTCCAG--CCAGACCGAGGGGTTGTGGCAGCAAGA-CTGGCAGTATGCAGA
66 TTCCCA-GTCTAAGCT-CAGATCGA-ATCGA-GGGTTGTGGCAGCAAGATC-GACAGCACGTAG-
* * *
28373213 GGGGGACTGGGCCGATCCCCGGCTTGCACATTAT
125 GGGGGACTGGGCCGATCCCCAGCTTGCGCATTCT
* * * * *
28373247 GCCTCTTCGGTTGGCTCAGCGCCTGCACGCTCGTTTCGTTGGTTCACTTATGCATACGGAGTTCA
1 GCCTCTTCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTCACTTATGCATACGGAGTTCA
** *
28373312 TTCCCAGTCTAAGCTCAGATCGAATCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGA
66 TTCCCAGTCTAAGCTCAGATCGAATCGAGGGTTGTGGCAGCAAGATCGACAGCACGTAGGGGGGA
* *
28373377 CTGGGCCGATCCCCAACTTGCGTATTCT
131 CTGGGCCGATCCCCAGCTTGCGCATTCT
* * * ** *
28373405 GCCTTTTCGATCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTTCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTCACTTATGCATACGGAGTTCA
28373470 TTCC
66 TTCC
28373474 ATGTCTAGGC
Statistics
Matches: 301, Mismatches: 69, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
154 4 0.01
155 27 0.09
156 27 0.09
157 59 0.20
158 125 0.42
159 26 0.09
160 28 0.09
161 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
GCCTCTTCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTCACTTATGCATACGGAGTTCA
TTCCCAGTCTAAGCTCAGATCGAATCGAGGGTTGTGGCAGCAAGATCGACAGCACGTAGGGGGGA
CTGGGCCGATCCCCAGCTTGCGCATTCT
Found at i:28380076 original size:26 final size:26
Alignment explanation
Indices: 28380040--28380092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28380030 GTTGACTTAG
* *
28380040 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
28380066 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
28380092 G
1 G
28380093 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:28380526 original size:158 final size:156
Alignment explanation
Indices: 28380066--28380557 Score: 526
Period size: 159 Copynumber: 3.1 Consensus size: 156
28380056 CCCAGTCTAA
* *
28380066 GCATAC-AGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGCAACAGGATCGAC
1 GCATACGA-AGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGC-ACAGGATCGAC
* ** * *
28380130 A-CACGCAGGGGGGACGGGGCTAATCCCCGGCTTGCTCATTCTGCCTCTCTGGTCGGCTGAGTGC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTC-GGCCGGCTGAGTGC
* *
28380194 CCGCATGC-CTATTTTGTGGGTTGGCTTAG
128 CCGCACGCTC-ATTTCGTGGGTTGGCTTAG
* * * * ** * * *
28380223 GCATAGGGAGTTCATT-CCAGGTCTATGCCCTAG-CTGGACCGAGGGTTGTGGCCACGGGATCGG
1 GCATACGAAGTTCATTCCCA-ATCTAAGATC-AGACCGGACCGAGGGTTGTGG-CACAGGATCGA
* * *
28380286 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCTGAGC
63 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCT-CGGCCGGCTGAGT
* *
28380351 GCCCGCACGTTCATTTCGTGGGTTGACTTAG
126 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
28380382 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCGAACCCAGGGTAGTGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCA-CAGGATCGACA
* * * *
28380447 GCACACAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTACGGCCGGCTGAGTGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCT-CGGCCGGCTGAGTGCC
*
28380512 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* *
28380540 GTATACGGAGTTCATTCC
1 GCATACGAAGTTCATTCC
28380558 ATGTCTAAGC
Statistics
Matches: 273, Mismatches: 51, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 44 0.16
158 104 0.38
159 117 0.43
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCACAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCGGCCGGCTGAGTGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:28380578 original size:26 final size:26
Alignment explanation
Indices: 28380542--28380592 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
28380532 TGGCTTAGGT
28380542 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
28380568 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
28380593 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:28380704 original size:184 final size:184
Alignment explanation
Indices: 28380382--28380751 Score: 490
Period size: 184 Copynumber: 2.0 Consensus size: 184
28380372 GTTGACTTAG
*
28380382 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCGAACCCAGGGTAGTGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGAACCCAGGGTAGTGGCAGCAGGATCGATA
** * * *
28380447 GCACACAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTACGGCCGGCTGAGTGCC
66 GCACACAGGGGGGACCGAAACGATCCCCGACTTACGCATTCTGCCTCTACGGCCAGCTGAGCGCC
* * *
28380512 CGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
* * * * *
28380566 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTA-TGGCAGCAGGATCGAT
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGAACCCAGGG-TAGTGGCAGCAGGATCGAT
* **** * * * * * *
28380630 AGTATGTTGGGGGGATCGAAACGATCCCTGACTTGCGCATTTTGTCTCTCCGGCCAGCTGAGCGC
65 AGCACACAGGGGGGACCGAAACGATCCCCGACTTACGCATTCTGCCTCTACGGCCAGCTGAGCGC
*
28380695 CCTCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
28380750 GC
1 GC
28380752 CCCAGCTGGA
Statistics
Matches: 159, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 157 0.99
185 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGAACCCAGGGTAGTGGCAGCAGGATCGATA
GCACACAGGGGGGACCGAAACGATCCCCGACTTACGCATTCTGCCTCTACGGCCAGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
Found at i:28380935 original size:26 final size:26
Alignment explanation
Indices: 28380899--28380951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28380889 GTTGACTTAG
28380899 GCATACAAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* * *
28380925 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
28380951 G
1 G
28380952 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:28381213 original size:158 final size:159
Alignment explanation
Indices: 28380982--28381586 Score: 648
Period size: 159 Copynumber: 3.8 Consensus size: 159
28380972 ACGACAGCAA
* * ** **
28380982 GATCGACAGCACACAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCTGGTTGGC
1 GATCGACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCAGCCGGC
* * *
28381047 TGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
*
28381112 T-CAGTCGGACCGAGGGTTATGGCAGCGG
131 TGCAGCCGGACCGAGGGTTATGGCAGCGG
** * * *
28381140 GATCGGTAGCACGCAAGGGGGACCAGGCCGATCC-CTGGCTTGCGCATTCTGCCTCTCCAGCCGG
1 GATCGACAGCACGCAAGGGGGACCGGGCCGATCCTC-GACTTGCACATTCTGCCTCTCCAGCCGG
* * *
28381204 ATGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GCGAGTTCATTCCATGTCTAAG
65 CTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAG
* * *
28381268 -CTGCAGCCAGACCGAGGGTTGTGGTAGCGG
129 CCTGCAGCCGGACCGAGGGTTATGGCAGCGG
* * * * * **
28381298 GATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTGCACATTATGCCTCTTCAATCGG
1 GATCGACAGCACGCA-AGGGGGACCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCAGCCGG
* * ** * *
28381363 CTCAGCGCCCACACGTTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG
65 CTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
** * * *
28381427 ATTGCA-CCGGACCAAGGGTTACGGCAGCAG
129 CCTGCAGCCGGACCGAGGGTTATGGCAGCGG
* * * * * *
28381457 GATCGACAACACGTAGGGGAGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GACTG
1 GATCGACAGCACGCAAGGG-GGACCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCAG-CCG
* * * * * *
28381521 GCTGAGCACCCGCATGCTCATTTTGTAGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAG
64 GCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
28381586 C
129 C
28381587 ATACGGAGTT
Statistics
Matches: 367, Mismatches: 69, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.01
158 151 0.41
159 203 0.55
160 9 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GATCGACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCAGCCGGC
TGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
TGCAGCCGGACCGAGGGTTATGGCAGCGG
Found at i:28381608 original size:26 final size:26
Alignment explanation
Indices: 28381559--28381611 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28381549 GTTGGCTTAG
*
28381559 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
28381585 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
28381611 G
1 G
28381612 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:28382308 original size:26 final size:26
Alignment explanation
Indices: 28382279--28382331 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28382269 GTTGACTTAG
*
28382279 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
28382305 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
28382331 G
1 G
28382332 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:28382830 original size:26 final size:26
Alignment explanation
Indices: 28382782--28382832 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
28382772 TGGCTTAGTT
*
28382782 ATACAGAGTTCATTCCATGTCTAAGC
1 ATACAGAGTTCATTCCATATCTAAGC
*
28382808 ATACGGAGTTCATTCCCA-ATCTAAG
1 ATACAGAGTTCATT-CCATATCTAAG
28382833 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATATCTAAGC
Found at i:28383204 original size:11 final size:11
Alignment explanation
Indices: 28383188--28383217 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
28383178 GCACGATCAC
28383188 CGGAGCATCGT
1 CGGAGCATCGT
28383199 CGGAGCATCGT
1 CGGAGCATCGT
28383210 CGGAGCAT
1 CGGAGCAT
28383218 TACCGAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.37, T:0.17
Consensus pattern (11 bp):
CGGAGCATCGT
Found at i:28383841 original size:26 final size:26
Alignment explanation
Indices: 28383805--28383854 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
28383795 GACTTAGGCG
*
28383805 TACGAAGTTCATCCCCAGTCTAAGCA
1 TACGAAGTTCATCCCCAATCTAAGCA
* *
28383831 TACGGAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATCCCCAATCTAAG
28383855 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAATCTAAGCA
Found at i:28384304 original size:157 final size:157
Alignment explanation
Indices: 28383828--28384476 Score: 535
Period size: 158 Copynumber: 4.1 Consensus size: 157
28383818 CCCAGTCTAA
* * * *
28383828 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAACAGGATC-AGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGA-C
* * * * *
28383892 AGCATGC-AGAGGGGACAAGGCCGATCCCCGGCTT-CTGCATTCTGCCTCTCAGGCCGACTGACC
65 AGCACGCAAG-GGGGACCAGGCCGATCCCCGGCTTAC-GCATTCTACCTCTCCGGCCGGCTGA--
* *
28383955 GC-CCGCACGCCCGTTTCATGGGTTGGCTTAG
126 GCACCGCACGCTCATTTCATGGGTTGGCTTAG
** * * ** ** * * * * **
28383986 GTGTAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACAGAGAGTTGTGGTAGTGGGATCG-C
1 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
28384049 AGCACGCAAAGGGGGACCAGGCTGATCCCCGGCGTACGCATTATGCCTCTCTGGCCGGCTTAGCA
65 AGCACGC-AAGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCA
*
28384114 TCCGCATC-CTCTTTTCATGGGTTGAG-TTAG
129 -CCGCA-CGCTCATTTCATGGGTTG-GCTTAG
*
28384144 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * *
28384209 GCACGC-AGGGGGACCGGGCCGGTCCCCGACTTGCGTATTTTACCTCTCCGACCGGCTGAGCACC
66 GCACGCAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCACC
* *
28384273 GGCACGCTCATTCCATGGGTTGGCTTGG
131 -GCACGCTCATTTCATGGGTTGGCTTAG
* * * * * ** *
28384301 GCATACTGAGTTCATTCCCAATTTAAGATCAGACCAGACTGAGGATTATGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
28384366 GGACGCAAGGGGGGATC-GAGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGCTGGTTGAGCG
66 GCACGCAA-GGGGGACCAG-GCCGATCCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGC-
* * * * * *
28384430 CCCGTAGGCTCGTTTCGTGGGATGGCTTAG
128 ACCGCACGCTCATTTCATGGGTTGGCTTAG
**
28384460 GCATACAAAGTTCATTC
1 GCATACGGAGTTCATTC
28384477 TGTGTCTAAG
Statistics
Matches: 388, Mismatches: 85, Indels: 35
0.76 0.17 0.07
Matches are distributed among these distances:
156 6 0.02
157 136 0.35
158 151 0.39
159 93 0.24
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCACC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:28384674 original size:26 final size:26
Alignment explanation
Indices: 28384645--28384697 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28384635 GTTGACTTAG
*
28384645 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
28384671 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
28384697 G
1 G
28384698 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:28385164 original size:26 final size:26
Alignment explanation
Indices: 28385128--28385180 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28385118 GTTGGCTTAG
28385128 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
28385154 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
28385180 G
1 G
28385181 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:28386253 original size:26 final size:26
Alignment explanation
Indices: 28386217--28386276 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
28386207 GTTGACTTAG
*
28386217 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
28386243 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
28386269 GCACACAG
1 GCATACAG
28386277 GGGGGACCGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:28386571 original size:26 final size:26
Alignment explanation
Indices: 28386524--28386573 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
28386514 GGCTTAGGCG
* **
28386524 TACGGAGTTCATTGCATGTCTAAGCA
1 TACGGAGTTCATTCCACATCTAAGCA
*
28386550 TACGGAGTTCATTCCCCATCTAAG
1 TACGGAGTTCATTCCACATCTAAG
28386574 ATTTTGAGCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCACATCTAAGCA
Found at i:28387272 original size:26 final size:26
Alignment explanation
Indices: 28387243--28387295 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28387233 GTTGACTTAG
*
28387243 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
28387269 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
28387295 G
1 G
28387296 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:28387743 original size:158 final size:158
Alignment explanation
Indices: 28387269--28387770 Score: 491
Period size: 158 Copynumber: 3.2 Consensus size: 158
28387259 CCCAGTCTAA
* * * * * *
28387269 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTAATTCCAT-GTCTAAGATCAGACTAGACTGAGGGTTGTGGTAGCCGGATCGAC
* ** * * * *
28387333 AGTACGCAGGGGGGAGTGGGCCGATCCCC-AGCTTGCGGATTCTACCTCTCCGGTCGACTGAGCA
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGGTCGACTGAGCG
* * * *
28387397 CCCACACACCCATTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
**
28387427 GCATA-GGAAGTTAATTCCATGTCTAAGCCCCAG-CTAGACTGAGGGTTGTGGTAG-CGAGA-CT
1 GCATACGG-AGTTAATTCCATGTCTAAG-ATCAGACTAGACTGAGGGTTGTGGTAGCCG-GATC-
* * * * * ** * ** * * *
28387488 GGCAGCTCACA-GAGGGATCCCCGATCGATCCCCGGCTTGCGTGTTATGCCTCTCTGGTCGGCTC
62 GACAGCACGCAGGGGGGA--CCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTG
*
28387552 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
125 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
28387586 GCATACGGAGTTAATTCCCA-GTCTAAGATCAGACCAAACTGAGGGTTGTGGTAGCCGGATCGAC
1 GCATACGGAGTTAATT-CCATGTCTAAGATCAGACTAGACTGAGGGTTGTGGTAGCCGGATCGAC
* **
28387650 AGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGG-CAGACTGAATG
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTC-GACTGAGCG
28387714 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
28387744 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTAATTCCATGTCTAAG
28387771 CATGCAGAGT
Statistics
Matches: 273, Mismatches: 55, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
157 12 0.04
158 137 0.50
159 111 0.41
160 13 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTAATTCCATGTCTAAGATCAGACTAGACTGAGGGTTGTGGTAGCCGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:28387780 original size:26 final size:26
Alignment explanation
Indices: 28387744--28387796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28387734 GTTGGCTTAG
28387744 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
*
28387770 GCATGCAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
28387796 G
1 G
28387797 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:28388869 original size:159 final size:159
Alignment explanation
Indices: 28388573--28388993 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 159
28388563 GGGGGGAGTG
* * * * * * * *
28388573 GGCCGATCCCCAGCTTGCGGATTCTACCTCTCCGGTCGGCTGAGCACCCGCACACCCATTTCGTG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTG
* **
28388638 GGTTGGCTTAGGCATA-GGAAGTTAATT-CCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGC
66 GGTTGGCTTAGGCATACGG-AGTTAATTCCCATGTCTAAGCCCCAGCTAAACCGAGGGTTGCAGC
*
28388701 AGCGAGATCGGCAGCACACA-GAGGGATCCCC
130 AGCGAGATCGACAGCACACAGGAGGGA--CCC
* * * * *
28388732 TGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGACTCAGCGCCCGCACGCTCATTTAGTG
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTG
* * * * * * *
28388797 GGTTGACTTAGGCATACGGAGTTAATTCCCA-GTCTAA-TCTCGGATCAAACTGAGGGTTGCAGT
66 GGTTGGCTTAGGCATACGGAGTTAATTCCCATGTCTAAGCCCCAGCT-AAACCGAGGGTTGCAGC
* ** * *
28388860 AGC-AGGATCGATAGCACGTAGGGGGGACCG
130 AGCGA-GATCGACAGCACACAGGAGGGACCC
* ** *
28388890 GGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGG-CAGACTGAATGCCCGCACGCTCGTTTCGT
1 GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTC-GACTGAGCGCCCGCACGCTCATTTCGT
* * *
28388954 GGGTTGGCTTAGGCATACAGAGTTCATT-CTATGTCTAAGC
65 GGGTTGGCTTAGGCATACGGAGTTAATTCCCATGTCTAAGC
28388994 ATGCGGAGTT
Statistics
Matches: 211, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 91 0.43
159 107 0.51
160 10 0.05
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTG
GGTTGGCTTAGGCATACGGAGTTAATTCCCATGTCTAAGCCCCAGCTAAACCGAGGGTTGCAGCA
GCGAGATCGACAGCACACAGGAGGGACCC
Found at i:28389724 original size:26 final size:26
Alignment explanation
Indices: 28389687--28389739 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28389677 GTTGACTTAG
28389687 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
28389713 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
28389739 G
1 G
28389740 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:28391013 original size:26 final size:26
Alignment explanation
Indices: 28390977--28391029 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28390967 GTTGACTTAG
28390977 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
28391003 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
28391029 G
1 G
28391030 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:28391431 original size:159 final size:159
Alignment explanation
Indices: 28391104--28391514 Score: 416
Period size: 159 Copynumber: 2.6 Consensus size: 159
28391094 CCGACTTGCA
* * * *
28391104 CATTCTGCCTCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGG
* * * * * *
28391169 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTATGGCAGGGGGATCGATAGCACGCAG
66 AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTACGACAGGAGGATCGACAACACGCAG
** * **
28391234 AGGGGGATCGGGTCGATCGTCGGCTTGTG
131 AGGGGGATCGGGTCGATCCCCAGCTTACG
* * * *
28391263 CATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
1 CATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGG
** * ** * * * *
28391328 AGTTCATTCCCA-GTCTAAG-ATCGGATCAGATTGAGGGTTGCGACAGTAGGATCGGCAACACGC
66 AGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAAGGTTACGACAGGAGGATCGACAACACGC
* *
28391391 AG-TGGGGATCTGGTCGATCCCCAGCTTACG
129 AGAGGGGGATCGGGTCGATCCCCAGCTTACG
* * * * * *
28391421 CATTTCTGCCTCTCCGGTCGGCTGAACGTCCACATGCCCGTTTCGTGGGTT-AGCTTAGGCATAG
1 CA-TTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATAG
*
28391485 GGAGTTCATTTCCATGTCTAAGCCCTAGTC
64 GGAGTTCA-TTCCATGTCTAAGCCCCAGTC
28391515 GAACCGAGGG
Statistics
Matches: 201, Mismatches: 44, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
158 26 0.13
159 160 0.80
160 14 0.07
161 1 0.00
ACGTcount: A:0.17, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
CATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTACGACAGGAGGATCGACAACACGCAG
AGGGGGATCGGGTCGATCCCCAGCTTACG
Found at i:28392933 original size:26 final size:26
Alignment explanation
Indices: 28392897--28392947 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28392887 TTGGCTTAGG
28392897 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
*
28392923 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
28392948 GATCGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:28393264 original size:171 final size:170
Alignment explanation
Indices: 28392962--28393290 Score: 412
Period size: 171 Copynumber: 1.9 Consensus size: 170
28392952 GGACCAGACT
*
28392962 GAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAACAGCACGTAGGGGGGATCAGGCCGATCCCC
1 GAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAACAGCACGCAGGGGGGATCAGGCCGATCCCC
* * ** * *
28393027 GGCTTACACATTCTACCTCTCTGACCGGTTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAG
66 GGCTTACACATTATACCTCTCCGACCGACTAAGTGCCCGCACGCTCATTTCATGGGTTGACTTAG
*
28393092 GCATACGGAGTTCAT-TCCATGTCTAAGCCCCAATCGGACC
131 GCATACGGAGTTCATCCCCA-GTCTAAGCCCCAATCGGACC
* * *** * * * *
28393132 GAGGGTTGTGGTAGCAGGACCAGCAGTGGGATCGATAGCACGCAGAGGGGGA-CTGGACTGATCC
1 GAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAACAGCACGCAG-GGGGGATCAGG-CCGATCC
* * * *
28393196 CCAGG-TTGCACATTATGCCTCTCCGACCGACTAAGTGCCCGTACGCTCATTTCGTGGGTTGACT
64 CC-GGCTTACACATTATACCTCTCCGACCGACTAAGTGCCCGCACGCTCATTTCATGGGTTGACT
28393260 TAGGCATACGGAGTTCATCCCCAGTCTAAGC
128 TAGGCATACGGAGTTCATCCCCAGTCTAAGC
28393291 ATACAGAGTT
Statistics
Matches: 134, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
170 40 0.30
171 89 0.66
172 5 0.04
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (170 bp):
GAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAACAGCACGCAGGGGGGATCAGGCCGATCCCC
GGCTTACACATTATACCTCTCCGACCGACTAAGTGCCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACGGAGTTCATCCCCAGTCTAAGCCCCAATCGGACC
Found at i:28393292 original size:26 final size:26
Alignment explanation
Indices: 28393263--28393315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28393253 GTTGACTTAG
*
28393263 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
28393289 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
28393315 G
1 G
28393316 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:28393485 original size:183 final size:184
Alignment explanation
Indices: 28393232--28393657 Score: 534
Period size: 183 Copynumber: 2.3 Consensus size: 184
28393222 CCGACTAAGT
* *
28393232 GCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
* * * * ** * **
28393297 AGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGTAGGATCGATAGCAC-GTA
66 AGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAACAGGATCGACAGCACACAA
** ** * * **
28393361 GGGAGGATTGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCTGGTCAGCTGAGC
131 GGG-GGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCTGGTCAGCTGAGC
* **
28393416 GCCCGCACGCTCGTTTCGTGGGTTGAC-TAGGTATACGGAGTTCATCCCCAGTCTAAGCATATGG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
* * *
28393480 AGTTCATTCCTAGTCTAAGATCAAACTGAACCGAGGGTTGCGGTAACAGGATCGACAGCACACAA
66 AGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAACAGGATCGACAGCACACAA
* *
28393545 GGGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCTGGTCGGTTGAGC
131 GGGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCTGGTCAGCTGAGC
* * * *
28393599 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCACGTCTAAGC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
28393658 CCCAGCCAGA
Statistics
Matches: 207, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
183 154 0.74
184 53 0.26
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAACAGGATCGACAGCACACAA
GGGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCTGGTCAGCTGAGC
Found at i:28393976 original size:26 final size:26
Alignment explanation
Indices: 28393947--28393999 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28393937 GTTGGCTTAG
*
28393947 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
28393973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
28393999 G
1 G
28394000 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:28394707 original size:26 final size:26
Alignment explanation
Indices: 28394671--28394723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28394661 GTTGGCTTAG
*
28394671 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
28394697 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
28394723 G
1 G
28394724 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:28394814 original size:11 final size:11
Alignment explanation
Indices: 28394800--28394835 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
28394790 ACCATCGCCA
28394800 GAGCATCGTCG
1 GAGCATCGTCG
*
28394811 GAGCATCATCG
1 GAGCATCGTCG
28394822 GAGCATCGTCG
1 GAGCATCGTCG
28394833 GAG
1 GAG
28394836 AGCCTAACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.36, T:0.17
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:28395435 original size:26 final size:26
Alignment explanation
Indices: 28395399--28395451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28395389 GTTGGCTTAG
28395399 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
28395425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
28395451 G
1 G
28395452 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:28396158 original size:26 final size:26
Alignment explanation
Indices: 28396122--28396174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28396112 GTTGGCTTAG
*
28396122 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
28396148 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
28396174 G
1 G
28396175 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:28396265 original size:11 final size:11
Alignment explanation
Indices: 28396251--28396286 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
28396241 ACCATCGCCA
28396251 GAGCATCGTCG
1 GAGCATCGTCG
*
28396262 GAGCATCATCG
1 GAGCATCGTCG
28396273 GAGCATCGTCG
1 GAGCATCGTCG
28396284 GAG
1 GAG
28396287 AGCCTAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.36, T:0.17
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:28397169 original size:159 final size:157
Alignment explanation
Indices: 28396815--28397183 Score: 406
Period size: 159 Copynumber: 2.3 Consensus size: 157
28396805 TGGTCGGTTG
* ***
28396815 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATTG
1 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGCCTAAGACCC
* * *
28396880 AACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGAGACTGGGCCGATCCCCGGC
65 AACTAGACCGAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGGGGAGAATGGGCCGATCCCCGGC
* * * * *
28396945 TTGGGCATTCTGCCTCTCCGACCGACTG
130 TTGCGCATTATGCATCTCAGACCGACTC
* * * * * ** *
28396973 AGTC-CCCGCATTC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCC
1 AG-CGCCCGCATGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GCCTAAGAC
* * *
28397036 CCAGAC-AGACCGAGGGTTGTGGCAGC-GAGACCGGCAGCATGCAGAGGGGGAATGGGCCGATCC
63 CCA-ACTAGACCGAGGGTTGCGGCAGCAG-GACCGGCAGCACGCAG-GGGAGAATGGGCCGATCC
* *
28397099 CCGGCTTGCGCATTATGCATCTTCAG-TCGGCTC
125 CCGGCTTGCGCATTATGCATC-TCAGACCGACTC
28397132 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
28397184 TAGTCGAAGC
Statistics
Matches: 172, Mismatches: 30, Indels: 17
0.79 0.14 0.08
Matches are distributed among these distances:
157 5 0.03
158 79 0.46
159 84 0.49
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGCCTAAGACCCA
ACTAGACCGAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGGGGAGAATGGGCCGATCCCCGGCT
TGCGCATTATGCATCTCAGACCGACTC
Found at i:28398209 original size:159 final size:157
Alignment explanation
Indices: 28397855--28398223 Score: 413
Period size: 159 Copynumber: 2.3 Consensus size: 157
28397845 TGGTCGGTTG
***
28397855 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATTG
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGCCTAAGACCC
* * *
28397920 AACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGAGACCGGGCCGATCCCCGGC
65 AACTAGACCGAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGGGGAGAACGGGCCGATCCCCGGC
* * * *
28397985 TTGGGCATTCTGCCTCTTCGACCGACTG
130 TTGCGCATTATGCATCTTCGACCGACTC
* ** * * * ** *
28398013 AGTC-CCCGCACACTTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCCC
1 AG-CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GCCTAAGACC
* * * *
28398077 CAGAC-AGACCGAGGGTTGTGGCAGC-GAGACCGGCAGCATGCAGAGGGGGAATGGGCCGATCCC
64 CA-ACTAGACCGAGGGTTGCGGCAGCAG-GACCGGCAGCACGCAG-GGGAGAACGGGCCGATCCC
* *
28398140 CGGCTTGCGCATTATGCATCTTC-AGTCGGCTC
126 CGGCTTGCGCATTATGCATCTTCGA-CCGACTC
*
28398172 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
28398224 TAGTCGAAGC
Statistics
Matches: 172, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 82 0.48
159 86 0.50
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGCCTAAGACCCA
ACTAGACCGAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGGGGAGAACGGGCCGATCCCCGGCT
TGCGCATTATGCATCTTCGACCGACTC
Found at i:28398952 original size:26 final size:26
Alignment explanation
Indices: 28398922--28398974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28398912 GTTGACTTAG
28398922 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
28398948 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
28398974 G
1 G
28398975 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:28400663 original size:26 final size:26
Alignment explanation
Indices: 28400634--28400686 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28400624 TCGTGGGTTG
28400634 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
28400660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
28400686 G
1 G
28400687 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:28401044 original size:26 final size:26
Alignment explanation
Indices: 28401015--28401066 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
28401005 TTGACTTAGA
28401015 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
28401041 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
28401067 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:28406657 original size:26 final size:26
Alignment explanation
Indices: 28406621--28406673 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28406611 GTTGACTTAG
* *
28406621 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
28406647 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
28406673 G
1 G
28406674 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:28406933 original size:157 final size:156
Alignment explanation
Indices: 28406647--28407142 Score: 511
Period size: 157 Copynumber: 3.2 Consensus size: 156
28406637 CCCAGTCTAA
* * * * * * * *
28406647 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGCGGCAACAGGATCGCA-
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGATCGAACCGAGGGTTGTGGCAACAGGATCGCAG
* ** * *
28406711 CACGCAG-GGGGGACGGGGCTAATCCCCGGCTTGCTCATTCTGCCTCTCTGGTCGGCTGAGTGCC
65 CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGCC
28406775 CGCACGC-CATTTTGTGGGTTGGCTTAG
130 CGCACGCTC-TTTTGTGGGTTGGCTTAG
* * * * * * *
28406802 GCATAGGGAGTTCATTCCAGGTCTATGCCCTAGCT-GGATCGAGGGTTGTGGCAACGGGATCGCA
1 GCATACGGAGTTCATTCCA-GTCTAAGACC-AGATCGAACCGAGGGTTGTGGCAACAGGATCGCA
* * *
28406866 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCC-GACTGGCTGAGCG
64 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTC-GGCTGAGTG
* *
28406930 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
128 CCCGCACGCTC-TTTTGTGGGTTGGCTTAG
* * * * * * *
28406960 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCGAACCCAGGGTAGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGATCGAACCGAGGGTTGTGGCAACAGGATCG-CA
* * * * * *
28407025 GCA--CACAGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTACGGTCGGCTGAGTGC
64 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGC
*
28407088 CCGCACGCTCGTTTGTGGGTTGGCTTAG
129 CCGCACGCTCTTTTGTGGGTTGGCTTAG
28407116 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
28407143 CATACGGAGT
Statistics
Matches: 278, Mismatches: 52, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
154 3 0.01
155 48 0.17
156 46 0.17
157 113 0.41
158 60 0.22
159 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGATCGAACCGAGGGTTGTGGCAACAGGATCGCAGC
ACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGCCC
GCACGCTCTTTTGTGGGTTGGCTTAG
Found at i:28407152 original size:26 final size:26
Alignment explanation
Indices: 28407116--28407168 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28407106 GTTGGCTTAG
28407116 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
28407142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
28407168 G
1 G
28407169 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:28407301 original size:340 final size:335
Alignment explanation
Indices: 28406859--28407833 Score: 937
Period size: 340 Copynumber: 2.8 Consensus size: 335
28406849 GTGGCAACGG
* * * * * * *
28406859 GATCG-CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACTGG
1 GATCGACAGCACACA-AGGGGGATCGAGACGATCCCCGACTTGCACATTATG-CTCTCCGGCCGG
* *
28406923 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC-CAATCTAAG
64 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCAC-GTCTAAG
* *
28406987 ATCGGATCGAACCCAGGGTAGTGGCAGCAGGATCGACAGCACACAGGGGGACCGAGCCGATCCCC
127 -TCAGATCG-ACCGAGGGTAGTGGCAGCAGGATCGACAGCACACAGGGGGACCGAGCCGATCCCC
*
28407052 GACTTACGCATTCTGCCTCTACGGTCGGCTGAGTGCCCGCACGCTCGTTT-GTGGGTTGGCTTAG
190 GACTTACGCATTCTGCCTCTACGGTCGGCTGAG-ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
28407116 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
254 GCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGA-
* * * *
28407181 CGAGGGTTACGGCAGCAG
318 CGAAGGTAACGACAGCAA
* * * * * * *
28407199 GATCGACAGTACGCAGGGGGGATCGAGATGATCCCCGACTTGCGCATTTTGTCTCTCCGGCCAGC
1 GATCGACAGCACACAAGGGGGATCGAGACGATCCCCGACTTGCACATTATG-CTCTCCGGCCGGC
* *
28407264 TGAGCGCCCTCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCC
65 TGAGCGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCACGTCTAAG--
* * * * * *
28407329 CCAGCTGGACCGAGGGTTGTGGCAAGACCAGCAGCGGGATC-AGCAGCACACAGAGGGA-CGGGC
127 TCAGATCGACCGAGGGTAGT-G---G--CAGCA---GGATCGA-CAGCACACAGGGGGACCGAGC
** * * * * * *
28407392 TAATCCTCGACTTACGCATTATGCCTCTTCGGTCGACCTTTCCAGCACCCGCACACTCGTTTCGT
182 CGATCCCCGACTTACGCATTCTGCCTCTACGGTCG-GC--T-GAG-ACCCGCACGCTCGTTTCGT
* * * *
28407457 GGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAAGCATACGAAGTTCATTCCCAGTCTAA
242 GGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* *
28407521 GATCGGATCGGACGAAGGTAACGACAGCAA
306 GATCAGATCAGACGAAGGTAACGACAGCAA
* * * * * *
28407551 GATCGACAGCACACAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGC-CTCTGGTCGGCT
1 GATCGACAGCACACAAGGGGGATCGAGACGATCCCCGACTTGCACATTATGCTCTCCGGCCGGCT
* * *
28407615 GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCT
66 GAGCGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCACGTCTAAG--T
* ** * *
28407680 CAG-TCGACCGAGGGTTA-TGGCAGCGGGATCGGTAGCACGCAAGGGGGACC-AGGCCGATCCCT
128 CAGATCGACCGAGGG-TAGTGGCAGCAGGATCGACAGCACAC-AGGGGGACCGA-GCCGATCCCC
* * * * * * * * *
28407742 GGCTTGCGCATTCTGCCTCTCCAGCCGGATGAGCCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
190 GACTTACGCATTCTGCCTCTACGGTCGGCTGAGACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
28407807 CATA-GCGAGTTCATTCCATGTCTAAGC
255 CATACG-GAGTTCATTCCATGTCTAAGC
28407834 TGCAGCCGGA
Statistics
Matches: 513, Mismatches: 95, Indels: 57
0.77 0.14 0.09
Matches are distributed among these distances:
336 4 0.01
337 45 0.09
338 2 0.00
339 1 0.00
340 119 0.23
341 21 0.04
342 28 0.05
343 4 0.01
344 1 0.00
345 1 0.00
346 5 0.01
348 36 0.07
349 31 0.06
350 71 0.14
351 2 0.00
352 72 0.14
353 67 0.13
354 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (335 bp):
GATCGACAGCACACAAGGGGGATCGAGACGATCCCCGACTTGCACATTATGCTCTCCGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCACGTCTAAGTCAG
ATCGACCGAGGGTAGTGGCAGCAGGATCGACAGCACACAGGGGGACCGAGCCGATCCCCGACTTA
CGCATTCTGCCTCTACGGTCGGCTGAGACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACGAAGGTA
ACGACAGCAA
Found at i:28407505 original size:26 final size:26
Alignment explanation
Indices: 28407469--28407521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28407459 GTTGACTTAG
28407469 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
28407495 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
28407521 G
1 G
28407522 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:28407829 original size:156 final size:158
Alignment explanation
Indices: 28407551--28408146 Score: 619
Period size: 155 Copynumber: 3.8 Consensus size: 158
28407541 ACGACAGCAA
* * * * *
28407551 GATCGACAGCACACAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCT--GGTCGGC
1 GATCGACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAGCCGGC
* *
28407614 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGC
66 TGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-
* *
28407678 CT-CAGTC-GACCGAGGGTTATGGCAGCGG
129 CTGCAGCCGGACCGAGGGTTGTGGCAGCGG
** * *
28407706 GATCGGTAGCACGCAAGGGGGACCAGGCCGATCC-CTGGCTTGCGCATTCTGCCTCTCCAGCCGG
1 GATCGACAGCACGCAAGGGGGACCGGGCCGATCCTC-GACTTGCGCATTCTGCCTCTCCAGCCGG
* *
28407770 ATGAGC-CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GCGAGTTCATT-CCATGTCTAA
65 CTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCCA-GTCTAA
*
28407832 GCTGCAGCCGGACCGAGGGTTGTGGTAGCGG
128 GCTGCAGCCGGACCGAGGGTTGTGGCAGCGG
* * * * **
28407863 GATCGACAGCACGCAGAGGGGGACCGAG-CGATCCCCGACTT--GCATTATGCCTCTTCAATC-G
1 GATCGACAGCACGCA-AGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAGCCGG
* ** * * * *
28407924 CTCAGTGCCCACACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGA
65 CTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
* * * *
28407989 TTGCA-CCGGACCGATGGTTGCGGCAGCAG
129 CTGCAGCCGGACCGAGGGTTGTGGCAGCGG
* * * * * *
28408018 GATCGACAACACGTAGGGGAGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GACTG
1 GATCGACAGCACGCAAGGG-GGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAG-CCG
* * * *
28408082 GCTGAGCACCCGCATGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
64 GCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
28408147 ATTTTGAGCC
Statistics
Matches: 366, Mismatches: 57, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
154 8 0.02
155 150 0.41
156 77 0.21
157 51 0.14
158 24 0.07
159 56 0.15
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GATCGACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAGCCGGC
TGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCT
GCAGCCGGACCGAGGGTTGTGGCAGCGG
Found at i:28408853 original size:26 final size:27
Alignment explanation
Indices: 28408815--28408868 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
28408805 GTTGACTTAG
28408815 GCATAATGGAGTTCATCCCCAGTCTAA
1 GCATAATGGAGTTCATCCCCAGTCTAA
*
28408842 GCATAA-GGAGTTCATTCCCAGTCTAA
1 GCATAATGGAGTTCATCCCCAGTCTAA
28408868 G
1 G
28408869 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATAATGGAGTTCATCCCCAGTCTAA
Found at i:28409741 original size:11 final size:11
Alignment explanation
Indices: 28409725--28409754 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
28409715 GCACGATCAC
28409725 CGGAGCATCGT
1 CGGAGCATCGT
28409736 CGGAGCATCGT
1 CGGAGCATCGT
28409747 CGGAGCAT
1 CGGAGCAT
28409755 TACCGAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.37, T:0.17
Consensus pattern (11 bp):
CGGAGCATCGT
Found at i:28410380 original size:26 final size:26
Alignment explanation
Indices: 28410344--28410393 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
28410334 GACTTAGGCG
*
28410344 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAATCTAAGCA
*
28410370 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
28410394 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCA
Found at i:28410840 original size:157 final size:156
Alignment explanation
Indices: 28410367--28410955 Score: 530
Period size: 159 Copynumber: 3.7 Consensus size: 156
28410357 CCCAGTCTAA
* *
28410367 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGAGTTGCGGCAACAGGATCAACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGAGTTGCGGCAGCAGGATCGACA
28410432 GCACGCAGAGGGGA-CGAGGCCGATCCCCGGCTT-CTGCATTCTGCCTCTCAGGCCGACTGACCG
66 GCACGCAG-GGGGACCG-GGCCGATCCCCGGCTTAC-GCATTCTGCCTCTCAGGCCGACTGA--G
* * *
28410495 CCCGTAC--GCCCGTTTCGTGGGTTGGCTTAG
126 CCCG-ACATGCTCATTTCATGGGTTGGCTTAG
** * * ** * * * * *
28410525 GTGTAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGATAGAGAGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGATCGAGAGTTGCGGCAGCAGGATCGA
* * * * * * * *
28410588 CAGCACGAAAAGGGGGACCAGGCTGATCCCCGGCTTATGCATTATGCCTCTCTGGCCGGCTCAGC
64 CAGCACG--CAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCAGGCCGACTGAGC
* *
28410653 GTCCG-CATGCTCTTTTCATGGGTTGACTTAG
127 --CCGACATGCTCATTTCATGGGTTGGCTTAG
* * * * *
28410684 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGTTCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGAGTTGCGGCAGCAGGATCGACA
* * * * * *
28410749 GCACGCAGGTGGACCGGGCCGATCCCTGACTTACGTATTCTGCCTCTCCGACCGACTGAGCACCG
66 GCACGCAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCAGGCCGACTGAGC-CCG
28410814 ACATGCTCATTTCATGGGTTGGCTTAG
130 ACATGCTCATTTCATGGGTTGGCTTAG
* * * ** *
28410841 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGA-CTGAG-GATTATGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATC-GAGAG-TTGCGGCAGCAGGATCGA
* * * * *
28410904 CAGGACGCAGGGGGGGATCGAGCCAATCCCCGGCTTACGCATTCTACCTCTC
64 CAGCACGCA--GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTC
28410956 CAGCTGGTTG
Statistics
Matches: 338, Mismatches: 76, Indels: 33
0.76 0.17 0.07
Matches are distributed among these distances:
156 5 0.01
157 130 0.38
158 52 0.15
159 145 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGAGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCAGGCCGACTGAGCCCGA
CATGCTCATTTCATGGGTTGGCTTAG
Found at i:28411001 original size:316 final size:316
Alignment explanation
Indices: 28410367--28411016 Score: 690
Period size: 316 Copynumber: 2.1 Consensus size: 316
28410357 CCCAGTCTAA
*
28410367 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGAGTTGCGGCAACAGGATCAACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGAGTTGCGGCAACAGGATCAACA
* *
28410432 GCACGCAGAGGGGACGAGGCCGATCCCCGGCTTCTGCATTCTGCCTCTCAGGCCGACTGACCGCC
66 GCACGCAGAGGGGACGAGGCCGATCCCCGACTTCTGCATTCTGCCTCTCAGACCGACTGA-CGCC
* * ** * * *
28410497 CGTACGCCCGTTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
130 CGTACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCAG
* * ** *
28410562 ATAGAGAGTTGTGGCAGCGGGACCGGCAGCACGAAAAGGGGGACCAGGCTGATCCCCGGCTTATG
195 ATAGAGAGTTATGGCAGCAGGACCGGCAGCACGAAAAGGGGGACCAGGCCAATCCCCGGCTTACG
* ** * * * *
28410627 CATTATGCCTCTCTGGCCGGCTCAGCGTCCGCATGCTCTTTTCATGGGTTGACTTAG
260 CATTATACCTCTCCAGCCGGCTCAGCGCCCGCAGGCTCGTTTCATGGGATGACTTAG
* * * * * *
28410684 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGTTCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGAGTTGCGGCAACAGGATCAACA
* * * *
28410749 GCACGCAG-GTGGACCG-GGCCGATCCCTGACTTAC-GTATTCTGCCTCTCCGACCGACTGA-GC
66 GCACGCAGAGGGGA-CGAGGCCGATCCCCGACTT-CTGCATTCTGCCTCTCAGACCGACTGACGC
* * *
28410810 ACCG-ACATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTTTAAG-ATCA
129 -CCGTAC--GCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA
* * * ** *
28410872 GACCAGACT-GAG-GATTATGGCAGCAGGATCGGCAGGACGCAGGGGGGGATC-GAGCCAATCCC
190 -ACCAGA-TAGAGAG-TTATGGCAGCAGGACCGGCAGCACGAAAAGGGGGACCAG-GCCAATCCC
* * * * * * *
28410934 CGGCTTACGCATTCTACCTCTCCAGCTGGTTGAGCGCCCGTAGGCTCGTTTCGTGGGATGGCTTA
251 CGGCTTACGCATTATACCTCTCCAGCCGGCTCAGCGCCCGCAGGCTCGTTTCATGGGATGACTTA
28410999 G
316 G
*
28411000 GCATACAAAGTTCATTC
1 GCATACAGAGTTCATTC
28411017 TGTGTCTAAG
Statistics
Matches: 274, Mismatches: 49, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
314 4 0.01
315 7 0.03
316 190 0.69
317 73 0.27
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGAGTTGCGGCAACAGGATCAACA
GCACGCAGAGGGGACGAGGCCGATCCCCGACTTCTGCATTCTGCCTCTCAGACCGACTGACGCCC
GTACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCAGA
TAGAGAGTTATGGCAGCAGGACCGGCAGCACGAAAAGGGGGACCAGGCCAATCCCCGGCTTACGC
ATTATACCTCTCCAGCCGGCTCAGCGCCCGCAGGCTCGTTTCATGGGATGACTTAG
Found at i:28411214 original size:26 final size:26
Alignment explanation
Indices: 28411185--28411237 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28411175 GTTGACTTAG
*
28411185 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
28411211 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
28411237 G
1 G
28411238 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:28411703 original size:26 final size:26
Alignment explanation
Indices: 28411667--28411719 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28411657 GTTGGCTTAG
28411667 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
28411693 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
28411719 G
1 G
28411720 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:28412793 original size:26 final size:26
Alignment explanation
Indices: 28412757--28412816 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
28412747 GTTGACTTAG
*
28412757 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
28412783 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
28412809 GCACACAG
1 GCATACAG
28412817 GGGGGACCGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:28413111 original size:26 final size:26
Alignment explanation
Indices: 28413064--28413113 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
28413054 GGCTTAGGCG
* **
28413064 TACGGAGTTCATTGCATGTCTAAGCA
1 TACGGAGTTCATTCCACATCTAAGCA
*
28413090 TACGGAGTTCATTCCCCATCTAAG
1 TACGGAGTTCATTCCACATCTAAG
28413114 ATTTTGAGCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCACATCTAAGCA
Found at i:28413811 original size:26 final size:26
Alignment explanation
Indices: 28413782--28413834 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28413772 GTTGACTTAG
*
28413782 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
28413808 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
28413834 G
1 G
28413835 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:28414282 original size:158 final size:158
Alignment explanation
Indices: 28413808--28414309 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 158
28413798 CCCAGTCTAA
* * * * * *
28413808 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTAATTCCAT-GTCTAAGATCAGACTAGACTGAGGGTTGTGGTAGCCGGATCGAC
* ** * * * *
28413872 AGTACGCAGGGGGGAGTGGGCCGATCCCC-AGCTTGCGGATTCTACCTCTCCGGTCGACTGAGCA
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGGTCGACTGAGCG
* * * *
28413936 CCCACACACCCATTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
**
28413966 GCATA-GGAGGTTAATTCCATGTCTAAGCCCCAG-CTAGACTGAGGGTTGTGGTAG-CGAGA-CT
1 GCATACGGA-GTTAATTCCATGTCTAAG-ATCAGACTAGACTGAGGGTTGTGGTAGCCG-GATC-
* * * * * ** * * ** * * *
28414027 GGCAGCTCACA-GAGGGATCCCCGATCGATCCCCGGCTTGAGTGTTATGCCTCTCTGGTCGGCTC
62 GACAGCACGCAGGGGGGA--CCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTG
*
28414091 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
125 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
28414125 GCATACGGAGTTAATTCCCA-GTCTAAGATCAGACCAAACTGAGGGTTGTGGTAGCCGGATCGAC
1 GCATACGGAGTTAATT-CCATGTCTAAGATCAGACTAGACTGAGGGTTGTGGTAGCCGGATCGAC
* * **
28414189 AGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAG-CAGACTGAATG
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTC-GACTGAGCG
28414253 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
28414283 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTAATTCCATGTCTAAG
28414310 CATGCAGAGT
Statistics
Matches: 270, Mismatches: 58, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 13 0.05
158 134 0.50
159 109 0.40
160 14 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTAATTCCATGTCTAAGATCAGACTAGACTGAGGGTTGTGGTAGCCGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:28414319 original size:26 final size:26
Alignment explanation
Indices: 28414283--28414335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28414273 GTTGGCTTAG
28414283 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
*
28414309 GCATGCAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
28414335 G
1 G
28414336 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:28415041 original size:26 final size:26
Alignment explanation
Indices: 28415004--28415056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28414994 GTTGACTTAG
28415004 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
28415030 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
28415056 G
1 G
28415057 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:28415829 original size:26 final size:26
Alignment explanation
Indices: 28415799--28415851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28415789 GTTGACTTAG
28415799 GCATACGAAGTTCATCACCAGTCTAA
1 GCATACGAAGTTCATCACCAGTCTAA
* *
28415825 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGAAGTTCATCACCAGTCTAA
28415851 G
1 G
28415852 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCACCAGTCTAA
Found at i:28416113 original size:158 final size:159
Alignment explanation
Indices: 28415825--28416155 Score: 418
Period size: 158 Copynumber: 2.1 Consensus size: 159
28415815 ACCAGTCTAA
* ** *
28415825 GCATACGGAGTTCATCTCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATCTCCAGTCTAAGATCAGACCAGACTGAGACTTGCGACAGCAGGATCGATA
* * * ** *
28415890 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACC
66 GCACGCAGGAGGAATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAATCGGCTAAGCACC
* *
28415955 CGCACGCTCATTTCGTGGGTT-GGCTTAG
131 CACACGCTCATTTCATGGGTTGGGCTTAG
* * **
28415983 GCATACGGAGTTGAT-TCCCAGTCTAAGATCAGACC-GAATTGAGACTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATCT-CCAGTCTAAGATCAGACCAG-ACTGAGACTTGCGACAGCAGGATCGA
* * **
28416046 TAGCACGCATGAGGAA-CTGGGCTGATCCTTGGCTTGCGCATTCTACCTCTCCAATCGGCTAAGC
64 TAGCACGCAGGAGGAATC-GGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAATCGGCTAAGC
28416110 ACCCACACGCTCATTTCATGGGTTGGGCTTAG
128 ACCCACACGCTCATTTCATGGGTTGGGCTTAG
*
28416142 GCATGCGGAGTTCA
1 GCATACGGAGTTCA
28416156 ATCCATGTCT
Statistics
Matches: 147, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
157 3 0.02
158 125 0.85
159 19 0.13
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATCTCCAGTCTAAGATCAGACCAGACTGAGACTTGCGACAGCAGGATCGATA
GCACGCAGGAGGAATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAATCGGCTAAGCACC
CACACGCTCATTTCATGGGTTGGGCTTAG
Found at i:28416288 original size:26 final size:26
Alignment explanation
Indices: 28416252--28416304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28416242 GTTGACTTAG
28416252 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
28416278 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
28416304 G
1 G
28416305 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:28416594 original size:159 final size:158
Alignment explanation
Indices: 28416364--28416823 Score: 478
Period size: 158 Copynumber: 2.9 Consensus size: 158
28416354 AGACCAGGCT
* * * * *
28416364 GATCCCC-GACTTGCACATTCTGCCTCTCTGGCTGGCTGAGCGCCCGTACGCTTGTTTCGTGGGT
1 GATCCCCAG-CTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
28416428 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTATGGCAGGGG
65 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGG
*
28416493 GATCGATAGCACGCAGAGGGGGATCGGGTC
130 GATCGATAACACGCAG-GGGGGATCGGGTC
** * * * * *
28416523 GATCGTCGGCTTGTGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTT
1 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* ** * * ** * **
28416588 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGATTGAGGGTTGTGACAGTA
66 GACTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCG
** * *
28416651 GGATCGGCAACACGCAGTGGGGATCTGGTC
129 GGATCGATAACACGCAGGGGGGATCGGGTC
* * * * * *
28416681 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGTCCACATGCCCGTTTCGTGGGTT
1 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
28416746 -AGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTTGTGGTAGCGG
66 GA-CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGG
*
28416810 GACCGATAACACGC
130 GATCGATAACACGC
28416824 TCGTTTCGTG
Statistics
Matches: 237, Mismatches: 58, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 119 0.50
159 110 0.46
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGG
ATCGATAACACGCAGGGGGGATCGGGTC
Found at i:28417019 original size:250 final size:250
Alignment explanation
Indices: 28416569--28417027 Score: 607
Period size: 250 Copynumber: 1.8 Consensus size: 250
28416559 TCAGCGCCCG
* * * *
28416569 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAT
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * *
28416634 TGAGGGTTGTGACAGTAGGATCGGCAACACGCAGTGGGGATCTGGTCGATCCCCAGCTTGCGCAT
66 CGAGGGTTGCGACAGTAGGATCGACAACACGCAGAGGGGATCTGGTCGATCCCCAGCTTGCGCAT
** * * * * * * * *
28416699 TCTGCCTCTCCGGTCGGCTGAACGTCCACATGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGT
131 TCTGCCTCTCCGACCGGCTGAACGCCCACACGCCCATTTCCTAGGTTAGCTTAAGCATACGGAAT
28416764 TCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTTGTGGTAGCGGGACCGATAA
196 TCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTTGTGGTAGCGGGACCGATAA
* *
28416819 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* ** * **
28416884 CGAGGGTTGCGATC-GTAGGATCGATAGTATGCAGAGGGGA-CTGGGTCGATCCCTGGCTTGCGC
66 CGAGGGTTGCGA-CAGTAGGATCGACAACACGCAGAGGGGATCT-GGTCGATCCCCAGCTTGCGC
* * * * *
28416947 ATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCCTAGGTTGGCTTAAGCGTACGGA
129 ATTCTGCCTCTCCGACCGGCTGAACGCCCACACGCCCATTTCCTAGGTTAGCTTAAGCATACGGA
28417012 ATTCATTCCATGTCTA
194 ATTCATTCCATGTCTA
28417028 CGCATATGGA
Statistics
Matches: 176, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
249 2 0.01
250 173 0.98
251 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (250 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGACAGTAGGATCGACAACACGCAGAGGGGATCTGGTCGATCCCCAGCTTGCGCAT
TCTGCCTCTCCGACCGGCTGAACGCCCACACGCCCATTTCCTAGGTTAGCTTAAGCATACGGAAT
TCATTCCATGTCTAAGCCCTAGTCGAACCGAGGGTTGTGGTAGCGGGACCGATAA
Found at i:28417162 original size:184 final size:184
Alignment explanation
Indices: 28416852--28417211 Score: 433
Period size: 184 Copynumber: 2.0 Consensus size: 184
28416842 TAGGCATACA
* * * * * *
28416852 GAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGATCGTAGGATCGATAGTATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGAGCGCAGGATCGACAGCATGCA
* * *
28416917 GAGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
66 GAGGGGACTGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
* * *
28416982 TCATTTCCTAGGTTGGCTTAAGCGTACGGAATTCATTCCATGTCTACGCATATG
131 TCATTTCATAGGTTGACTTAAGCATACGGAATTCATTCCATGTCTACGCATATG
* *
28417036 GAGTTCATTCCCAGTCTAAGATC-GAACCAGATCGAGGGCTG-TAGCAGCAGGATCGACAGCATG
1 GAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGCTGCGAGC-GCAGGATCGACAGCATG
* ** *
28417099 CAGGGGGGA-TCGAGCCGAT-CCTCAGCTTG-GACATTCTGCCTCTCCGGTCGGCTGAGTGCCCG
64 CAGAGGGGACT-GAGCCGATCCCT-AGCTTGCG-CATTCTGCCTCTCCGACCGGCTGAGCGCCCG
** * * *
28417161 CACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
126 CACGCTCATTTCATAGGTTGACTTAAGCATACGGAATTCATTCCATGTCTA
28417212 AGCCCCATCC
Statistics
Matches: 148, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
183 8 0.05
184 140 0.95
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGCGAGCGCAGGATCGACAGCATGCA
GAGGGGACTGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
TCATTTCATAGGTTGACTTAAGCATACGGAATTCATTCCATGTCTACGCATATG
Found at i:28417902 original size:157 final size:157
Alignment explanation
Indices: 28417470--28418199 Score: 416
Period size: 159 Copynumber: 4.6 Consensus size: 157
28417460 GATCAAGCTG
* * * * **
28417470 ATCCCCAACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCTACACGCCTGTTTCATGGGTTG
1 ATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGG-TCAGCGCCTGCACGCCCATTTCATGGGTTG
* * ** *
28417535 GCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGGGA
65 GCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCTAGCCAGACTGAGGGTTGCAGTAGCAGGA
* * *
28417600 CAGACAGTACGTAGAGGGGGATCGGGTCG
129 CAGACAGCACGTAGAGGGGGATCGGGCCA
*** * * * * * * * * *
28417629 ATCCCTGGCTTACGCATTATGCCTCTTCGCCCTGCTCAGCGCTTGCATGCTCATTTCGTGGGTTG
1 ATCCCCAACTTGCGCATTCTGCCTCTCCGGCC-GGTCAGCGCCTGCACGCCCATTTCATGGGTTG
* * * *** * ** **
28417694 ACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATTGGACTGGACCAAGGGTTGCAGTAGCAGG
65 GCTTAGGCATAGGGAGTTCATT-CCATGTCTAACCCTAG-CCAGACTGAGGGTTGCAGTAGCAGG
28417758 ATC-GACAGCACGTA-AGGGGGA-CTGGGCCA
128 A-CAGACAGCACGTAGAGGGGGATC-GGGCCA
* * * * *
28417787 ATCCCCAACTTGTGCATTCTGCCTCTCCGGTCGGTTAGCGCCTGTACGCCCATTTCAAGGGTTGG
1 ATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGGTCAGCGCCTGCACGCCCATTTCATGGGTTGG
* ** * * *
28417852 CTTAGGCATAGGGAGTTCATTGCATGTCTACACCCTAGCCAGACTGAGGGTTGTGGCAACGGGAC
66 CTTAGGCATAGGGAGTTCATTCCATGTCTA-ACCCTAGCCAGACTGAGGGTTGCAGTAGCAGGAC
* * * * * *
28417917 TGGCAGCACGCAGAGGGGGACCAGGCCG
130 AGACAGCACGTAGAGGGGGATCGGGCCA
* * * * * * * * * *
28417945 ATCCCCGACTTACGCATTATGCCTCTTCGGCTTGCTCAGCGCCCGTACGCTCATTTCGTGGGTTG
1 ATCCCCAACTTGCGCATTCTGCCTCTCCGGC-CGGTCAGCGCCTGCACGCCCATTTCATGGGTTG
* ** ** * * * * *
28418010 ACTTAGGCATACAGAGTTCATTCC-TAGTCTAA-GATCGGACCAGACCGAGGGTTAC-GACAGTA
65 GCTTAGGCATAGGGAGTTCATTCCAT-GTCTAACCCT-AG-CCAGACTGAGGGTTGCAG-TAGCA
* * ** ***
28418072 GGATC-GATAGCACGCAG-GGGGGATTTGGTTG
126 GGA-CAGACAGCACGTAGAGGGGGATCGGGCCA
** * * * ** * * * * *
28418103 ATCCCCGGCTTGCGTATTCTGCCTCTTCGACCAACTGAGCGCCCGCACGCTCGTTTCTTGGGTTG
1 ATCCCCAACTTGCGCATTCTGCCTCTCCGGCC-GGTCAGCGCCTGCACGCCCATTTCATGGGTTG
*
28418168 GCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GCTTAGGCATAGGGAGTTCATTCCATGTCTAA
28418200 ACATATGGAG
Statistics
Matches: 432, Mismatches: 121, Indels: 37
0.73 0.21 0.06
Matches are distributed among these distances:
156 3 0.01
157 76 0.18
158 168 0.39
159 179 0.41
160 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
ATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGGTCAGCGCCTGCACGCCCATTTCATGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAACCCTAGCCAGACTGAGGGTTGCAGTAGCAGGACA
GACAGCACGTAGAGGGGGATCGGGCCA
Found at i:28417964 original size:316 final size:317
Alignment explanation
Indices: 28417384--28418199 Score: 861
Period size: 316 Copynumber: 2.6 Consensus size: 317
28417374 CCCAGTCTAA
* * * * * * *
28417384 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGTAGGAT-AAGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAGTAGCAGGATCGA-C
* ** ** ** *
28417448 AGCACG-CAGGTAGA-TCAAGCTGATCCCCAACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCA
65 AGCACGTAAGGGGGACT-GGGCCAATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
** * *
28417511 CCTACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCC
129 CCTACACGCCCATTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * * * *
28417576 AGACTGAGGGTTGTGGTAGCGGGACAGACAGTACGTAGAGGGGGATCGGGTCGATCCCTGGCTTA
194 AGACTGAGGGTTGTGGCAACGGGACAGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTA
** * *
28417641 CGCATTATGCCTCTTCGCCCTGCTCAGCGCTTGCATGCTCATTTCGTGGGTTGACTTAT
259 CGCATTATGCCTCTTCGCCCTGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
28417700 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCAGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAGTAGCAGGATCGACA
* * * *
28417765 GCACGTAAGGGGGACTGGGCCAATCCCCAACTTGTGCATTCTGCCTCTCCGGTCGG-TTAGCGCC
66 GCACGTAAGGGGGACTGGGCCAATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
** * *
28417829 TGTACGCCCATTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTACA-CCCTAGCCA
131 TACACGCCCATTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA-AGCCCCAGCCA
* *
28417893 GACTGAGGGTTGTGGCAACGGGACTGGCAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTAC
195 GACTGAGGGTTGTGGCAACGGGACAGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTAC
* * *
28417958 GCATTATGCCTCTTCGGCTTGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
260 GCATTATGCCTCTTCGCCCTGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* ** * * * * *
28418016 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTAC-GACAGTAGGATCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAG-TAGCAGGATCGAC
* * * * *** ** * * * ** *
28418080 AGCACGCAGGGGGGATTTGGTTGATCCCCGGCTTGCGTATTCTGCCTCTTCGACCAACTGAGCGC
65 AGCACGTAAGGGGGACTGGGCCAATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
** * * ** *
28418145 CCGCACGCTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CTACACGCCCATTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
28418200 ACATATGGAG
Statistics
Matches: 412, Mismatches: 82, Indels: 12
0.81 0.16 0.02
Matches are distributed among these distances:
315 1 0.00
316 318 0.77
317 92 0.22
318 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAGTAGCAGGATCGACA
GCACGTAAGGGGGACTGGGCCAATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
TACACGCCCATTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACTGAGGGTTGTGGCAACGGGACAGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACG
CATTATGCCTCTTCGCCCTGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:28418211 original size:26 final size:26
Alignment explanation
Indices: 28418175--28418225 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28418165 TTGGCTTAGG
28418175 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
*
28418201 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
28418226 GATCGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:28418577 original size:26 final size:26
Alignment explanation
Indices: 28418541--28418593 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28418531 GTTGACTTAG
*
28418541 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
28418567 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
28418593 G
1 G
28418594 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:28424669 original size:26 final size:26
Alignment explanation
Indices: 28424640--28424692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28424630 GTTGGCTTAG
*
28424640 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
28424666 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
28424692 G
1 G
28424693 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:28425400 original size:26 final size:26
Alignment explanation
Indices: 28425364--28425416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28425354 GTTGGCTTAG
*
28425364 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
28425390 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
28425416 G
1 G
28425417 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:28425507 original size:11 final size:11
Alignment explanation
Indices: 28425493--28425528 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
28425483 ACCATCGCCA
28425493 GAGCATCGTCG
1 GAGCATCGTCG
*
28425504 GAGCATCATCG
1 GAGCATCGTCG
28425515 GAGCATCGTCG
1 GAGCATCGTCG
28425526 GAG
1 GAG
28425529 AGCCTAACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.36, T:0.17
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:28426129 original size:26 final size:26
Alignment explanation
Indices: 28426093--28426145 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28426083 GTTGGCTTAG
28426093 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
28426119 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
28426145 G
1 G
28426146 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:28426851 original size:26 final size:26
Alignment explanation
Indices: 28426815--28426867 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28426805 GTTGGCTTAG
*
28426815 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
28426841 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
28426867 G
1 G
28426868 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:28426958 original size:11 final size:11
Alignment explanation
Indices: 28426944--28426979 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
28426934 ACCATCGCCA
28426944 GAGCATCGTCG
1 GAGCATCGTCG
*
28426955 GAGCATCATCG
1 GAGCATCGTCG
28426966 GAGCATCGTCG
1 GAGCATCGTCG
28426977 GAG
1 GAG
28426980 AGCCTAACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.36, T:0.17
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:28429397 original size:880 final size:879
Alignment explanation
Indices: 28427791--28429481 Score: 2451
Period size: 880 Copynumber: 1.9 Consensus size: 879
28427781 GGAATGGGCC
* * * *
28427791 GATCCCCGGCTTGCGCATTATGCATCTTCAGTCGGCTCAGCGGCCCGCATGCTCATTTCGTGGGT
1 GATCCCCGGCTTGCGCATTATGCATCTTCAGTCGACTCAGCGACCCGCATGCTAATTTCATGGGT
*
28427856 TGGACTTAGGCATACGGAGTTCATTCCTAGTCGAAGCATACGAAGTTTCATTCCTAGTCTAATTA
66 TGGACTTAGGCATACGGAGTTCATTCCTAGTCGAAGCATACGAAGTTTCATTCCCAGTCTAATTA
* * ** * *
28427921 TTTTGAGCCACGAGGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGG
131 TTTTGAGCCACGAGGCACATGCTGGCCTCAGGCATGTGCTGGTGCCACATTTTTTTCACCCGGGG
**
28427986 CACCATCGCTGGAGCATCACCGGAGAGCCTAACCAGCGCATTGGGGGGTTCCGGTGATTGGGGGG
196 CACCATCGC-GGAGCATCACCGGAGAGCCTAACCAGCGCATTGGGGGGTTCCGACGATTGGGGGG
* *
28428051 CCGGGGGGGTGTGGCACATATGTGCGATGGCTGTTGTACTTGGCCCTTATATTGGCCCCCTATCC
260 CCGGAGGGGTGTGGCACATATGTGCGATGGCTGTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
28428116 CTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATCTCAGATTTTATAGGTTTGCTGCCA
325 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATCTCAGATTTTATAGGTTTGCTGCCA
28428181 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTC
390 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTC
* * * *
28428246 TAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATCTCTACCAAATTTG
455 GAGTTTTTAACTAAATTTTTTTAT-CATG-C-AAAAAAATACAAGGATCACCTCTACCAAATTTG
* *
28428311 GGGACAAAATTATTCCTAAACAAATTTTAAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATG
517 GGGACAAAATTATTCCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
* *
28428376 AAAAATAGAAAACGGGTCATCTTGCAACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGA
582 AAAAATAAAAAACGGGTCATCTTGCAACGAAACTTCACATGAAGGCGTAGGGGACCATTGTATGA
* * *
28428441 ATTTACACACCATAAATATGGCATTGGCATGGCAGAAATATGAATATGTGCTTGAACCCACCTAC
647 ATTTACACACCATAAAAATGACATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTAC
* * * * * * *
28428506 CACCCGTTCGATCTCCAGTTTGCGCATCTTACCCCTCTGGTCGACTTAGCGCCCGCACGCTCGTT
712 CACCCGTTCGATCCCCAGCTTGCACATCCTACCCCTCTGGTCGACTGAGCGCCCACACGCTCATT
*
28428571 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTGGTCTAAGACTGAACTAGACTGAGGGTTGC
777 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCTGGTCTAAGACTGAACTAGACTGAGGGTTGC
28428636 AGCAGCAGGATCAGCAGCACGTAGAGGGGGACCAGGTT
842 AGCAGCAGGATCAGCAGCACGTAGAGGGGGACCAGGTT
* * *
28428674 GATCCCTGGCTTGCGCATTATGCCTCTTCAGTCGACTCAGC-ACCCGCATGTTAATTTCATGGGT
1 GATCCCCGGCTTGCGCATTATGCATCTTCAGTCGACTCAGCGACCCGCATGCTAATTTCATGGGT
*
28428738 T-GACTTAGGCATACGGAGTTCATTCCTAGTCGAAGCATACGGAG-TTCATTCCCAGGTCTAA-T
66 TGGACTTAGGCATACGGAGTTCATTCCTAGTCGAAGCATACGAAGTTTCATTCCCA-GTCTAATT
*
28428800 ATTTTTGAGCCCACG-GTGCACAT-CTGGACCTCAGGCAT-TGCTATGTGCCACATTTTTTTTCA
130 A-TTTTGAG-CCACGAG-GCACATGCTGG-CCTCAGGCATGTGCT-GGTGCCACA-TTTTTTTCA
* * * *
28428862 CTCGGGGCACCATCG-GCGAGCATCGCCGGAGAGGCCTAACCGGTGGCATT-GGGGGTTCCGACG
189 CCCGGGGCACCATCGCG-GAGCATCACCGGAGA-GCCTAACCAG-CGCATTGGGGGGTTCCGACG
*
28428925 ATTGGGGTGCCGGAGGGGTGT-GCTTACATGATGTGCGATGG-TGGCTGGTACTTGGCCCTTATA
251 ATTGGGGGGCCGGAGGGGTGTGGC--ACAT-ATGTGCGATGGCT-G-TGGTACTTGGCCCTTATA
* *
28428988 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
311 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATCTCAGATTTTA
* *
28429053 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTGACAAA
376 TAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
* * *
28429118 ATCTTCTCCACTTCGAGTTTTTAACTAAATTTTTTT-T-TTG-ACAAAAATACAAGGTTCACCTC
441 ATCTTCTCCACTTCGAGTTTTTAACTAAATTTTTTTATCATGCAAAAAAATACAAGGATCACCTC
***
28429180 TACCAAATTTGGGGACAAAACGTT-TT-CTAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGT
506 TACCAAATTTGGGGACAAAA--TTATTCCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGT
* * * * * *
28429243 TTTAAAAATCGTGAAAAATAAAAAATGGGTCGTCTTGCCATGAAACTTCACATGAAGGCGTAGGG
569 TTCAAAAATCATGAAAAATAAAAAACGGGTCATCTTGCAACGAAACTTCACATGAAGGCGTAGGG
**
28429308 GACCATTGTATGAATTTACAGGCCATAAAAATGACATTGGCATGGCAGAAATATGAAGATGTGCT
634 GACCATTGTATGAATTTACACACCATAAAAATGACATTGGCATGGCAGAAATATGAAGATGTGCT
* * * * * *
28429373 TGAACCCACCTACCACCTGTTCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAGCGT
699 TGAACCCACCTACCACCCGTTCGATCCCCAGCTTGCACATCCTACCCCTCTGGTCGACTGAGCGC
28429438 CCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
764 CCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
28429482 CCCCAGTCTA
Statistics
Matches: 721, Mismatches: 70, Indels: 37
0.87 0.08 0.04
Matches are distributed among these distances:
880 294 0.41
881 66 0.09
882 63 0.09
883 101 0.14
884 10 0.01
885 13 0.02
886 174 0.24
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (879 bp):
GATCCCCGGCTTGCGCATTATGCATCTTCAGTCGACTCAGCGACCCGCATGCTAATTTCATGGGT
TGGACTTAGGCATACGGAGTTCATTCCTAGTCGAAGCATACGAAGTTTCATTCCCAGTCTAATTA
TTTTGAGCCACGAGGCACATGCTGGCCTCAGGCATGTGCTGGTGCCACATTTTTTTCACCCGGGG
CACCATCGCGGAGCATCACCGGAGAGCCTAACCAGCGCATTGGGGGGTTCCGACGATTGGGGGGC
CGGAGGGGTGTGGCACATATGTGCGATGGCTGTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATCTCAGATTTTATAGGTTTGCTGCCAA
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCG
AGTTTTTAACTAAATTTTTTTATCATGCAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGA
CAAAATTATTCCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAA
ATAAAAAACGGGTCATCTTGCAACGAAACTTCACATGAAGGCGTAGGGGACCATTGTATGAATTT
ACACACCATAAAAATGACATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACC
CGTTCGATCCCCAGCTTGCACATCCTACCCCTCTGGTCGACTGAGCGCCCACACGCTCATTTCAT
GGGTTGACTTAGGCATACGGAGTTCATTCCTGGTCTAAGACTGAACTAGACTGAGGGTTGCAGCA
GCAGGATCAGCAGCACGTAGAGGGGGACCAGGTT
Found at i:28431335 original size:158 final size:157
Alignment explanation
Indices: 28431033--28431476 Score: 447
Period size: 158 Copynumber: 2.8 Consensus size: 157
28431023 TTGTGTTAGT
* * * *
28431033 AGGATCGATAGCACGC--AGGGGGACCGGGTCGATCCCTGACTTACGCATTCTGCCTCTCCAGTC
1 AGGATCGATAGCACGCAGAGGGGGA-CGGATCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCC
* **
28431096 GGCTAAGCA-CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 GGCTAAG-AGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* * *
28431160 AGCCCAACCGGACTGAGGGTTGTGGCAGCG
129 AGACCAACAGGACTGAGGGTTGCGGCAG-G
* * * *
28431190 A-GATCGATAGCACACAGAGGGGGATCGGATCGATCCCCGACTTGCACATTATGCCTCTCCGGCC
1 AGGATCGATAGCACGCAGAGGGGGA-CGGATCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCC
* * * * *
28431254 GGCTCAGTGCCCG-ATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTA
65 GGCTAAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTA
* *
28431317 AGATCAGATCAGG-CTGAGGGTTGCGGCAGT
129 AGACCA-A-CAGGACTGAGGGTTGCGGCAGG
* * * * * ** *
28431347 AGGATCGACAGGACGCAG-GGGGGACCGAGCTGGTCCCCGACTTGCGCATTCTGCCTCTTTAACC
1 AGGATCGATAGCACGCAGAGGGGGACGGATC-GATCCCCGACTTGCGCATTCTGCCTCTCCAGCC
* * * *
28431411 GGCTGAGAGCCCGCACGCTCGTTTCGTGGGATGGCTTAGGCATAC-GAAGTTTATTCCATGTGTA
65 GGCTAAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTA
28431475 AG
129 AG
28431477 CATACGGAGT
Statistics
Matches: 234, Mismatches: 42, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
156 17 0.07
157 93 0.40
158 121 0.52
159 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGATCGATAGCACGCAGAGGGGGACGGATCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCG
GCTAAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
ACCAACAGGACTGAGGGTTGCGGCAGG
Found at i:28431502 original size:26 final size:26
Alignment explanation
Indices: 28431450--28431502 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28431440 GATGGCTTAG
* *
28431450 GCATACGAAGTTTATTCCATGTGTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
28431476 GCATACGGAGTTCATTCTCA-GTCTAA
1 GCATACGAAGTTCATTC-CATGTCTAA
28431502 G
1 G
28431503 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:28431854 original size:26 final size:26
Alignment explanation
Indices: 28431804--28431856 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28431794 GTTGGCTTAG
*
28431804 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
*
28431830 GCATACGGAGTTTATTCCCA-CTCTAA
1 GCATACGGAGTTCATT-CCATCTCTAA
28431856 G
1 G
28431857 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:28432529 original size:26 final size:26
Alignment explanation
Indices: 28432499--28432551 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28432489 GTTGACCTAG
* *
28432499 GCATACAGAGTTCATCCCCATTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
28432525 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
28432551 G
1 G
28432552 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:28434270 original size:26 final size:25
Alignment explanation
Indices: 28434225--28434276 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
28434215 GTTGACTTAG
28434225 GCATACGAAGTTCAACCCCAGTCTAA
1 GCATACGAAGTTCAACCCCAG-CTAA
**
28434251 GCATACGAAGTTCATTCCCAGCTAA
1 GCATACGAAGTTCAACCCCAGCTAA
28434276 G
1 G
28434277 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (25 bp):
GCATACGAAGTTCAACCCCAGCTAA
Found at i:28434458 original size:26 final size:26
Alignment explanation
Indices: 28434406--28434459 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
28434396 CAGGTTGGCT
*
28434406 TAGGCATACGGAGTTCATTCCATGTC
1 TAGGCATACGGAGTTCATGCCATGTC
28434432 TAGGCATACGGAGTTCAATGCCA-GTC
1 TAGGCATACGGAGTTC-ATGCCATGTC
28434458 TA
1 TA
28434460 AGAGTTTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATGCCATGTC
Found at i:28435171 original size:26 final size:26
Alignment explanation
Indices: 28435134--28435186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28435124 GTTGACTTAG
28435134 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
28435160 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
28435186 G
1 G
28435187 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:28435355 original size:26 final size:26
Alignment explanation
Indices: 28435319--28435371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28435309 GTTGGCTTAG
28435319 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
28435345 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
28435371 G
1 G
28435372 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:28435447 original size:36 final size:36
Alignment explanation
Indices: 28435395--28435506 Score: 161
Period size: 36 Copynumber: 3.1 Consensus size: 36
28435385 GAGGGTTGCA
*
28435395 GTAGCAGGACCAGCAGCAGGATCAGCAGCAGGATCG
1 GTAGCAGGATCAGCAGCAGGATCAGCAGCAGGATCG
* * * *
28435431 GTAGTAGGATCAGCAGCAGGATCGGCAGTAGGATCA
1 GTAGCAGGATCAGCAGCAGGATCAGCAGCAGGATCG
* *
28435467 GTAGCAAGATCAGCAGCAGGATCAGTAGCAGGATCG
1 GTAGCAGGATCAGCAGCAGGATCAGCAGCAGGATCG
28435503 GTAG
1 GTAG
28435507 GGACCGGGCC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.31, C:0.20, G:0.36, T:0.13
Consensus pattern (36 bp):
GTAGCAGGATCAGCAGCAGGATCAGCAGCAGGATCG
Found at i:28435506 original size:12 final size:12
Alignment explanation
Indices: 28435397--28435501 Score: 129
Period size: 12 Copynumber: 8.8 Consensus size: 12
28435387 GGGTTGCAGT
*
28435397 AGCAGGACCAGC
1 AGCAGGATCAGC
28435409 AGCAGGATCAGC
1 AGCAGGATCAGC
* *
28435421 AGCAGGATCGGT
1 AGCAGGATCAGC
*
28435433 AGTAGGATCAGC
1 AGCAGGATCAGC
*
28435445 AGCAGGATCGGC
1 AGCAGGATCAGC
* *
28435457 AGTAGGATCAGT
1 AGCAGGATCAGC
*
28435469 AGCAAGATCAGC
1 AGCAGGATCAGC
*
28435481 AGCAGGATCAGT
1 AGCAGGATCAGC
28435493 AGCAGGATC
1 AGCAGGATC
28435502 GGTAGGGACC
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 77 1.00
ACGTcount: A:0.32, C:0.21, G:0.34, T:0.12
Consensus pattern (12 bp):
AGCAGGATCAGC
Found at i:28435828 original size:26 final size:26
Alignment explanation
Indices: 28435780--28435832 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28435770 GTTGACTTAG
*
28435780 GCATACGGAGTTCATCTCTAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
28435806 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
28435832 G
1 G
28435833 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:28436308 original size:26 final size:26
Alignment explanation
Indices: 28436278--28436330 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28436268 GTTGGCTTAG
*
28436278 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
28436304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
28436330 G
1 G
28436331 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:28436518 original size:26 final size:26
Alignment explanation
Indices: 28436488--28436540 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
28436478 GTTGACTTAG
28436488 GCATAC-AGAGTTCA-TCCCTAGTCTAA
1 GCATACGA-AGTTCATTCCC-AGTCTAA
28436514 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
28436540 G
1 G
28436541 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.