Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 303 of 402
Found at i:28609882 original size:159 final size:157
Alignment explanation
Indices: 28609538--28610060 Score: 534
Period size: 158 Copynumber: 3.3 Consensus size: 157
28609528 AACTCCGTAT
* * * * * *
28609538 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* *
28609603 CCGGCCCGAGAGGCAGAATGTGCAAGCCGAGGATAAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGG-CCGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * * * ** *
28609668 TGTTGCCGCAACCCTCGGTCTGATCCAA
130 TGCTGCCACAACCCTCAGTCTGGTTGAG
* * *
28609696 TCTTAGAC-TGGGAATGAACT-TTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCCT-TATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTA
* * * * * * *
28609759 AGCCGGGCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGA
64 AGCCGGCCG-AGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGTCCCCC-CTGCGTGCTGCCGA
* *
28609824 TCCTGCTACCACAACCCTCAGTCTGGTTGGG
127 TCCTGCTGCCACAACCCTCAGTCTGGTTGAG
* * * *
28609855 GCTTAGGCATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCTTATGCATAAGCCAACCCACGAAACGA-GCGTGCGGGCGCT-A
* * * * * * * *
28609919 A-CCAGTCGGAGAGGTAGAATGTACAAGCCGTGGAGCAGCCCGATCCCCCCCGCGTGCTGCCGAT
64 AGCC-GGCCGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGAT
** *
28609983 CCCACTGCCACAACCCTCAGTCTGGTTGTG
128 CCTGCTGCCACAACCCTCAGTCTGGTTGAG
* *
28610013 GCTTAGACATGGAATGAACTCCCTATG-ACTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCTTATGCA-TAAGCCAACCCACGAAACG
28610061 GGCATGCAGG
Statistics
Matches: 299, Mismatches: 55, Indels: 21
0.80 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 174 0.58
159 116 0.39
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCGGCCGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCAGTCTGGTTGAG
Found at i:28610030 original size:158 final size:158
Alignment explanation
Indices: 28609538--28610199 Score: 548
Period size: 159 Copynumber: 4.2 Consensus size: 158
28609528 AACTCCGTAT
* * * ** *
28609538 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * ** * *
28609603 CCGGCCCGAGAGGCAGAATGTGCAAGCCGAGGATAAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * * * ** *
28609668 TGTTGCCGCAACCCTCGGTCTGATCCAA
131 TGCTGCCACAACCCTCAGTCTGGTTGAG
* * * * *
28609696 TCTTAGAC-TGGGAATGAACT-TTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-
1 GCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * ** * * *
28609758 AAGCCGGGCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCG
64 AA-CCAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCC-CTGCGTGCTGCCG
* *
28609823 ATCCTGCTACCACAACCCTCAGTCTGGTTGGG
127 ATCCTGCTGCCACAACCCTCAGTCTGGTTGAG
* *
28609855 GCTTAGGCATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCA
* * * * * * *
28609919 ACCAGTCGGAGAGGTAGAATGTACAAGCCGTGGAGCAGCCCGATCCCCCCCGCGTGCTGCCGATC
65 ACCAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATC
** *
28609984 CCACTGCCACAACCCTCAGTCTGGTTGTG
130 CTGCTGCCACAACCCTCAGTCTGGTTGAG
* * * * * *
28610013 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCAGGGCATTCA
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCACTCA
** * * * * * * **
28610078 GTCA-ACTGGAGAGGTAGAATGCACAAGCCGAGGATCGGCTCAGTCCCCCCTACGTTCTATCGAT
65 ACCAGAC-GGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGAT
* * * *
28610142 CCTGTTGTCGCAACCCTCGGTAC-GGTCTGA-
129 CCTGCTGCCACAACCCTCAGT-CTGGT-TGAG
* *
28610172 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCTTATGC
28610200 TTAGATTGGG
Statistics
Matches: 405, Mismatches: 85, Indels: 27
0.78 0.16 0.05
Matches are distributed among these distances:
157 2 0.00
158 181 0.45
159 215 0.53
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCAGTCTGGTTGAG
Found at i:28610179 original size:159 final size:157
Alignment explanation
Indices: 28609813--28610143 Score: 387
Period size: 158 Copynumber: 2.1 Consensus size: 157
28609803 TCCCCCTCTG
* ** * * * *
28609813 CGTGCTGCCGATCCTGCTACCACAACCCTCAGTCTGGTTGGGGCTTAGGCATGGAATGAACTCCT
1 CGTGCTACCGATCCCACTGCCACAACCCTCAGTCTGGTT-GTGCTTAGACATGGAATGAACTCCC
* * * * *
28609878 TATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAACCAGTCGGAGAGGTAGAATGTAC
65 TATGACTAAGCCAACCCATGAAACAGGCATGCGGGCACTCAACAACTCGGAGAGGTAGAATGCAC
* * *
28609943 AAGCCGTGGAGCAGCCCGATCCCCCCCG
130 AAGCCGAGGAGCAGCCAGATCCCCCCCA
*
28609971 CGTGCTGCCGATCCCACTGCCACAACCCTCAGTCTGGTTGTGGCTTAGACATGGAATGAACTCCC
1 CGTGCTACCGATCCCACTGCCACAACCCTCAGTCTGGTTGT-GCTTAGACATGGAATGAACTCCC
* * *
28610036 TATGACTAAGCCAACCCATGAAACGGGCATGCAGGGCATTCAGTCAACT-GGAGAGGTAGAATGC
65 TATGACTAAGCCAACCCATGAAACAGGCATGC-GGGCACTCA-ACAACTCGGAGAGGTAGAATGC
* * *
28610100 ACAAGCCGAGGATCGGCTCAG-TCCCCCCTA
128 ACAAGCCGAGGAGCAGC-CAGATCCCCCCCA
* *
28610130 CGTTCTATCGATCC
1 CGTGCTACCGATCC
28610144 TGTTGTCGCA
Statistics
Matches: 146, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
157 1 0.01
158 86 0.59
159 54 0.37
160 5 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CGTGCTACCGATCCCACTGCCACAACCCTCAGTCTGGTTGTGCTTAGACATGGAATGAACTCCCT
ATGACTAAGCCAACCCATGAAACAGGCATGCGGGCACTCAACAACTCGGAGAGGTAGAATGCACA
AGCCGAGGAGCAGCCAGATCCCCCCCA
Found at i:28610792 original size:158 final size:158
Alignment explanation
Indices: 28610535--28611039 Score: 567
Period size: 158 Copynumber: 3.2 Consensus size: 158
28610525 GGCCCGATCC
* *
28610535 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTG
* * ** *
28610600 AGCAGGCCAGAGAGGCAGAATGCAAAAGTCGGGGATCGACCTGATCTCCCCTGCGTGCTGTCGAT
66 AGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGATCCCCCCTGCGTGCTGTCGAT
* * *
28610665 CCTGCTACAGCAACCCTTAGTCTGATCT
131 CCTGCTACAGCAGCCCTCAGTCTCATCT
* * * *
28610693 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCCGACACTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTG
* * * *
28610758 AGCCGGCCGGATAGGCATAATGCGCATG-CTGGGGATCGACCT-AGTCCCCCTCTGTGTGCTGTC
66 AGCCGGCCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGACCTGA-TCCCCC-CTGCGTGCTGTC
* * *
28610821 GGTCCTG-TAGCCA-CAGCCCTCGGTC-CAACT
128 GATCCTGCTA--CAGCAGCCCTCAGTCTCATCT
** * * *
28610851 GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGC
1 -GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGC
* * * * * *
28610915 TTG-GCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTT
64 -TGAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGATCCCCCCTGCGTGCTGTC
* *
28610979 GATCCTACTACCGCAGCCCTCAGT-TCAGTCT
128 GATCCTGCTACAGCAGCCCTCAGTCTCA-TCT
28611010 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
28611040 TTAAACTGGG
Statistics
Matches: 284, Mismatches: 48, Indels: 30
0.78 0.13 0.08
Matches are distributed among these distances:
157 4 0.01
158 154 0.54
159 120 0.42
160 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTG
AGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGATCCCCCCTGCGTGCTGTCGAT
CCTGCTACAGCAGCCCTCAGTCTCATCT
Found at i:28611049 original size:26 final size:26
Alignment explanation
Indices: 28611013--28611065 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28611003 TCAGTCTGAT
* *
28611013 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
28611039 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
28611065 C
1 C
28611066 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:28619364 original size:26 final size:26
Alignment explanation
Indices: 28619335--28619387 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28619325 CCAGTCCGAT
28619335 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28619361 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28619387 C
1 C
28619388 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28620469 original size:159 final size:158
Alignment explanation
Indices: 28619884--28620674 Score: 690
Period size: 159 Copynumber: 5.0 Consensus size: 158
28619874 GTCCTACTAT
* *
28619884 CGCAACCCTCGGTTC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CGCAACCCTCGGTCCGA-TCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
** * * * * *
28619948 GAAACGAGCGTGCAGTTGCTCAGCCAACCGGAGAGGTAGAATGTGCAAGCCGAGGATCAACTCGA
65 GAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA
* *
28620013 TCCCCCCTGTGTGCTGTCGATCCTGCTGT
130 TCCCCCCTGCGTGCTGTCGATCCTGCTGC
* * **
28620042 CGCAACCCT-GAGTCCGGTCTGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGTTAACCCAT
1 CGCAACCCTCG-GTCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * *
28620105 GAAACAAGCGTG-AGG-GCACTAGGCCAACCAGAGAGGCATAATGCGCAAGCCTG-GGATCGGCC
65 GAAACGAGCGTGCAGGCGCTC-A-GCCAGCCGGAGAGGCAGAATGCGCAAGCC-GAGGATCGACC
** * *
28620167 CGATCCCCCTCTGCGTGCTGTCGATCCCACCGT
127 CGATCCCCC-CTGCGTGCTGTCGATCCTGCTGC
** * ** * *
28620200 AACAACCCTCGGTCC-AGCTGGGGCTTAGACAT--GAATGAACTCCCTACGCCTAAGCCAACCCA
1 CGCAACCCTCGGTCCGATC-GGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * * * * *
28620262 AGAAATGGGCATGCGGGCGCTCAGTCGGTCGGAGAGGCAAAATGCGCAAGTCGAAGATCGACCCG
64 TGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCG
28620327 ATCCACCCCTGCGTGCTGTCGATCCTGCTGC
129 ATCC-CCCCTGCGTGCTGTCGATCCTGCTGC
* * * * *
28620358 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACACTGTATGCCTAAGTCAACCCACG
1 CGCAACCCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATG
* * * * * * *
28620423 AAATGAGCGTGCAGGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGT
66 AAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAT
* * *
28620488 CCCTCTCTGCGTGCTGTCGGT-CTCGCCGC
131 CCC-CCCTGCGTGCTGTCGATCCT-GCTGC
* * * ** * *
28620517 CACAACCCTTC-GTTCGATTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCCAAGCCAACCCA
1 CGCAACCC-TCGGTCCGATCGGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * ** *
28620580 TGAAACGGGAGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCATAAGTC-AGGGATCGACCC
64 TGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCC
* *
28620644 GATCCCCCCTACATGCTGTCGATCCTGCTGC
128 GATCCCCCCTGCGTGCTGTCGATCCTGCTGC
28620675 TGGTCCTACT
Statistics
Matches: 502, Mismatches: 108, Indels: 46
0.77 0.16 0.07
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 83 0.17
158 195 0.39
159 212 0.42
160 6 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CGCAACCCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAT
CCCCCCTGCGTGCTGTCGATCCTGCTGC
Found at i:28620541 original size:317 final size:316
Alignment explanation
Indices: 28619907--28620674 Score: 942
Period size: 317 Copynumber: 2.4 Consensus size: 316
28619897 TCAGTCTGAT
* * * * **
28619907 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGTTGCTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
** * * * * *
28619971 CCAACCGGAGAGGTAGAATGTGCAAGCCGAGGATCAACTCGATCCCCCCTGTGTGCTGTCGATCC
65 CCGGCCGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * *
28620036 TGCTGTCGCAACCCTGAGTCCGGTCTGATCTTAGACTGGGAATGAACTCGTATGCCTAAGTTAAC
130 TGCTGCCGCAACCCTGAGTCCGATCCGATCTTAGACTGGGAATGAACACGTATGCCTAAGTCAAC
* *
28620101 CCATGAAACAAGCGTGAGGGCACTAGGCCAACCAGAGAGGCATAATGCGCAAGCCTGGGATCGGC
195 CCACGAAACAAGCGTGAGGGCACTAGGCCAACCAGAGAGGCATAATGCGCAAGCCTGGGATCGAC
*
28620166 CCGATCCCCCTCTGCGTGCTGTCGATCCCACCGTAACAACCCTCGGTCCAGCTGGGG
260 CCGATCCCCCTCTGCGTGCTGTCGATCCCACCGCAACAACCCTCGGTCCAGCTGGGG
* * * *
28620223 CTTAGACAT-GAATGAACTCCCTACGCCTAAGCCAACCCAAGAAATGGGCATGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGC
* * * *
28620287 CGGTCGGAGAGGCAAAATGCGCAAGTCGAAGATCGACCCGATCCACCCCTGCGTGCTGTCGATCC
66 CGGCCGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGATCC-CCCCTGCGTGCTGTCGATCC
28620352 TGCTGCCGCAACCCTCG-GTCCGATCCGATCTTAGACTGGGAATGAACACTGTATGCCTAAGTCA
130 TGCTGCCGCAACCCT-GAGTCCGATCCGATCTTAGACTGGGAATGAACAC-GTATGCCTAAGTCA
** * ** *
28620416 ACCCACGAAATGAGCGTGCA-GGCGCT-GAGCCAGTCGGAGAGGCATAATGCGCAAG-CTGGGGA
193 ACCCACGAAACAAGCGTG-AGGGCACTAG-GCCAACCAGAGAGGCATAATGCGCAAGCCT-GGGA
* * * * * * * * *
28620478 TCGACCCGGTCCCTCTCTGCGTGCTGTCGGTCTCGCCGCCACAACCCTTCGTTCGA-TTGGGG
255 TCGACCCGATCCCCCTCTGCGTGCTGTCGATCCCACCGCAACAACCC-TCGGTCCAGCTGGGG
*
28620540 CTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGG-AGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCA-TGCGGGCGCTCAG
** * *
28620604 CCGGCCGGAGAGGTAGAATGCATAAGTC-AGGGATCGACCCGATCCCCCCTACATGCTGTCGATC
65 CCGGCCGGAGAGGTAGAATGCGCAAGTCGA-GGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
28620668 CTGCTGC
129 CTGCTGC
28620675 TGGTCCTACT
Statistics
Matches: 384, Mismatches: 57, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
315 79 0.21
316 72 0.19
317 142 0.37
318 91 0.24
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGC
CGGCCGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTGAGTCCGATCCGATCTTAGACTGGGAATGAACACGTATGCCTAAGTCAACC
CACGAAACAAGCGTGAGGGCACTAGGCCAACCAGAGAGGCATAATGCGCAAGCCTGGGATCGACC
CGATCCCCCTCTGCGTGCTGTCGATCCCACCGCAACAACCCTCGGTCCAGCTGGGG
Found at i:28620748 original size:26 final size:26
Alignment explanation
Indices: 28620710--28620760 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28620700 CCGATCCGAT
*
28620710 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
28620736 CTTAGGCAT-GGAATGAACTCCGTAT
1 CTTAGGC-TGGGAATGAACTCCGTAT
28620761 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCGTATG
Found at i:28621243 original size:26 final size:26
Alignment explanation
Indices: 28621214--28621263 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
28621204 GTCCGATCTC
28621214 AGACTAGGAATGAACTCCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
* *
28621240 AGACTGGGGATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
28621264 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:28621963 original size:26 final size:26
Alignment explanation
Indices: 28621925--28621977 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28621915 GGCTCAAAAT
*
28621925 CTTAGACTGGGAACGAAGTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
28621951 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCATATG
28621977 C
1 C
28621978 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:28622160 original size:26 final size:26
Alignment explanation
Indices: 28622109--28622161 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28622099 CCAGTCTGAT
**
28622109 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
28622135 CTTAGACTGGGCATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
28622161 C
1 C
28622162 CTAAGACAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:28622506 original size:26 final size:26
Alignment explanation
Indices: 28622477--28622529 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28622467 TTGGTCTGAT
*
28622477 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28622503 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28622529 C
1 C
28622530 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28622541 original size:184 final size:185
Alignment explanation
Indices: 28622318--28622688 Score: 446
Period size: 184 Copynumber: 2.0 Consensus size: 185
28622308 TTTGGCTGGG
* * *
28622318 GCTTAGACATGGAATGAACTCTGTATGCCGATGCCAACCCACGACAA-GAGCGTACGGGCGGTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGA-AATGAGCGTACGGGCGCTCA
* * * * * *
28622382 GCCGGTCAGAGAGGCAGAATGCAAAA-ATCGGGGA-TCGGCTCGAT-CCTTCCTGTGTGCTGTCG
65 GCCGATCAGAGAGGCAGAATGCAAAAGCT-GGGGACT-GACCCGATCCCTTCCTGCGTGCTGCCG
* ** ** * *
28622444 ATCCTGC-AGCCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
128 ATCCTACTA-CCGCAACCCTCAGTCCGGTCCAATCTTACACTGGGAATGAACTCCGTAT
* * * *
28622502 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* **
28622567 TCGATCAGAGAGGCAGAATGCGTAAGCTGGGGACTGACCCGATCCCTTCCTGCGTGCTGCCGATC
66 CCGATCAGAGAGGCAGAATGCAAAAGCTGGGGACTGACCCGATCCCTTCCTGCGTGCTGCCGATC
* *
28622632 CTACTACCGTAACCCTCAGTCCGGTCCAATCTTACACTGGGAATTAACTCCGTAT
131 CTACTACCGCAACCCTCAGTCCGGTCCAATCTTACACTGGGAATGAACTCCGTAT
28622687 GC
1 GC
28622689 CTAAGTCAAC
Statistics
Matches: 157, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
183 2 0.01
184 87 0.55
185 67 0.43
186 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCGATCAGAGAGGCAGAATGCAAAAGCTGGGGACTGACCCGATCCCTTCCTGCGTGCTGCCGATC
CTACTACCGCAACCCTCAGTCCGGTCCAATCTTACACTGGGAATGAACTCCGTAT
Found at i:28622813 original size:159 final size:158
Alignment explanation
Indices: 28622512--28623005 Score: 491
Period size: 159 Copynumber: 3.1 Consensus size: 158
28622502 GCTTAGACAT
* * * *
28622512 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGTCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAG
** * * *
28622577 AGGCAGAATGCGTAAGCTGGGGA-CTGACCCGAT--CCCTTCCTGCGTGCTGCCGATCCTACTAC
66 AGGCAGAATGCGTAAGCAAGGGATC-G-GCCGATCCCCCTT--TGCGTGCTGCCGGTCCTGCTAC
* * *
28622639 CGTAACCCTCAGTCCGGTCCAATCTTACACTG
127 CGCAACCCTCAGTCCGGTCCGATCTTACAATG
* * * * *
28622671 GGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAACCGATC-GAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAG-A
* * * *
28622735 GAGGCATAATGCGTAAGCAAGGGATCGGCTCGATCCCCCTTTGCGTGCTGCCGGTCCCGCTGCCA
65 GAGGCAGAATGCGTAAGCAAGGGATCGGC-CGATCCCCCTTTGCGTGCTGCCGGTCCTGCTACCG
* ** * * ** *
28622800 CAACCTTTTGTCC-GACTGGGGCTTAGAAAT-
129 CAACCCTCAGTCCGGTC-CGATCTTA-CAATG
* * *
28622830 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAG
** * * *
28622895 AGGCAGAATGCACAAGCCAA-GGATCGGCCCAGTCCCCC-TTGCGTCCTGCTGGTCCTGCTACCG
66 AGGCAGAATGCGTAAG-CAAGGGATCGGCCGA-TCCCCCTTTGCGTGCTGCCGGTCCTGCTACCG
* *
28622958 CAACCCTCGGTCCGGTCCGATCTTACATTG
129 CAACCCTCAGTCCGGTCCGATCTTACAATG
28622988 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
28623006 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 58 0.22
159 195 0.73
160 7 0.03
161 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAG
AGGCAGAATGCGTAAGCAAGGGATCGGCCGATCCCCCTTTGCGTGCTGCCGGTCCTGCTACCGCA
ACCCTCAGTCCGGTCCGATCTTACAATG
Found at i:28623008 original size:26 final size:26
Alignment explanation
Indices: 28622979--28623031 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28622969 CCGGTCCGAT
*
28622979 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
28623005 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
28623031 C
1 C
28623032 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:28623267 original size:171 final size:170
Alignment explanation
Indices: 28623004--28623371 Score: 468
Period size: 171 Copynumber: 2.2 Consensus size: 170
28622994 AACTCCGTAT
* * *
28623004 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * * * *
28623069 CCGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGATTCACCTCTGCGTGCTGTCGATC
66 CCGGCTGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCTCG-GTCACCCCTGAGTGCTATCGATC
*
28623134 CCGCTGCCGGTCCTACTACCACAACCCTTGATCCGGCTGGG
130 CCGCTACCGGTCCTACTACCACAACCCTTGATCCGGCTGGG
28623175 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * *
28623239 ACGGGCTGGAGAGGTAGAATGAGCAAGCCGAGGATCAGTTCGGTCCCCCCTGAGTGCTATCGATC
65 ACCGGCTGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCTCGGTCACCCCTGAGTGCTATCGATC
* * * * ** * ** * *
28623304 CTGCTACTGGTCCTGCTACCGCAACCCTCAATCTGATTCGA
130 CCGCTACCGGTCCTACTACCACAACCCTTGATCCGGCTGGG
*
28623345 TCTTAGACTGGGAATGAACTCCGTATG
1 GCTTAGACTGGGAATGAACTCCGTATG
28623372 TTTAGACATG
Statistics
Matches: 168, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
169 1 0.01
170 71 0.42
171 95 0.57
172 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CCGGCTGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCTCGGTCACCCCTGAGTGCTATCGATCC
CGCTACCGGTCCTACTACCACAACCCTTGATCCGGCTGGG
Found at i:28623384 original size:26 final size:26
Alignment explanation
Indices: 28623347--28623423 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
28623337 TGATTCGATC
28623347 TTAGAC-TGGGAATGAACTCCGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
*
28623373 TTAGACATGGAATGAACTCTGTATGT
1 TTAGACATGGAATGAACTCCGTATGT
28623399 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
28623424 CCTAAGCTAG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:28624381 original size:26 final size:26
Alignment explanation
Indices: 28624345--28624397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28624335 CTGATCTGAT
28624345 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
28624371 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
28624397 C
1 C
28624398 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28625442 original size:26 final size:26
Alignment explanation
Indices: 28625413--28625465 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28625403 CCGGTTCGAT
*
28625413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
28625439 CTTAGACTGGGGATGTACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
28625465 C
1 C
28625466 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:28625661 original size:26 final size:26
Alignment explanation
Indices: 28625609--28625661 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28625599 CTGATCCGAT
*
28625609 CTTAGACTGGAAATGAACTCTGCATG
1 CTTAGACTGGAAATGAACTCCGCATG
*
28625635 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGCATG
28625661 C
1 C
28625662 CTAACCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGCATG
Found at i:28626457 original size:159 final size:157
Alignment explanation
Indices: 28626156--28626676 Score: 566
Period size: 159 Copynumber: 3.3 Consensus size: 157
28626146 ACTCCATAGG
* *
28626156 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCGCGAAACGAGCGTACGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
28626220 CCGGTCGGAGAGGGTAGAATGCGCAAGCCGA-GATCCGACCCGATCCCCCCTGCGTGCTGTCGAT
65 CCGGTCGGAGA-GGCAGAATGCGCAAGCCAAGGAT-CGACCCGATCCCCCCTACGTGCTGTCGAT
* *
28626284 CCTGCTGCTGCAACCCTCAGTCCGAACCAAT
128 CCTGCTGC-CCAACCCTCAGTCCGAACCGAT
* * * * * * * *
28626315 CTTCGACTGGGAATGCACTCCGTATGCCTAAGTCAAACCATGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * *
28626380 CGGTCGGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCC-CTACGTGCTGTCGATCC
* ** * **
28626445 CGCTGCCACAACCCTTGGTCCG-ACTGGGG
130 TGCTGCC-CAACCCTCAGTCCGAAC-CGAT
* * * *
28626474 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGTTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
28626538 CCGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCC-AGTCCCCCCTACGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGA-TCCCCCCTACGTGCTGTCGATC
* * * *
28626602 CTACTACCCTAACCCTCAGTCCGATCTGAT
129 CTGCTGCCC-AACCCTCAGTCCGAACCGAT
* * *
28626632 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
28626677 TTAGCATGCG
Statistics
Matches: 296, Mismatches: 56, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 104 0.35
159 189 0.64
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCT
GCTGCCCAACCCTCAGTCCGAACCGAT
Found at i:28627367 original size:26 final size:26
Alignment explanation
Indices: 28627329--28627381 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28627319 GGCTCAAACT
*
28627329 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28627355 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28627381 C
1 C
28627382 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28627693 original size:26 final size:26
Alignment explanation
Indices: 28627661--28627721 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
28627651 CAACCCTCGA
28627661 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTGGGGATGAAC
* *
28627687 TCTGTATGGTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTGGGGATGAAC
28627713 TCCGTATGC
1 TCCGTATGC
28627722 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGGATGAAC
Found at i:28627907 original size:26 final size:26
Alignment explanation
Indices: 28627878--28627930 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28627868 CCAATCCGAT
* *
28627878 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACGT-GGAATGAACGCCCTATG
28627904 CTTAGACGTGGAATGAACGCCCTATG
1 CTTAGACGTGGAATGAACGCCCTATG
28627930 C
1 C
28627931 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACGCCCTATG
Found at i:28628101 original size:26 final size:26
Alignment explanation
Indices: 28628060--28628112 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28628050 CTGGTTTGAT
28628060 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
28628086 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28628112 C
1 C
28628113 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28628236 original size:390 final size:390
Alignment explanation
Indices: 28627513--28628340 Score: 1099
Period size: 390 Copynumber: 2.1 Consensus size: 390
28627503 TCCAACTGGG
*
28627513 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGACCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGACCGCTCAG
* *
28627578 CCGGCCAAAGAGGCAAGAATACGCAAGTCGGGGATTGGCCCGGTCCCCCTACGTGCTATCAATCC
66 CCGGCCAAAGAGGCAAGAATACGCAAGTCGAGGATTGGCCCGGTCCCCCTACGTGCTACCAATCC
** * * * * *
28627643 TGCTGCCACAACCCTCGATCCGTATGCTTAGACTGGGGATGAACTCTGTATGGTTAGACTGGGGA
131 TGCAACCACAACCCTAGATCCGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGA
* * ** * *
28627708 TGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCCTGCAGGTGCTCAACTGGCCGGAGAGGC
196 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCACTCAACCGACCGGAGAGGC
* * * ** *
28627773 CGATCGAAGAGGTAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCCTACATGCTGTCGATCCT
261 CGACCGAAGAGGTAGAATACACAAGCCGAGGATCAGCCCGATCCCCCCTACATGCTGTCGATCCT
* *
28627838 ATTGCTGGTCCTACTACCATAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTAT
326 ACTGCTGGTCCTACTACCATAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
28627903 GCTTAGACGTGGAATGAACGCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGACCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGACCGCTCAG
* * *
28627968 CCGGCCAAAGAGGC-AGAATATGTAAG-CTGAGGATTGGCCC-GTCCCCCTACGTGCTACCGATC
66 CCGGCCAAAGAGGCAAGAATACGCAAGTC-GAGGATTGGCCCGGTCCCCCTACGTGCTACCAATC
** * *
28628030 CTGCAACCGTAACCCTTAG-TCTGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
130 CTGCAACCACAACCC-TAGATC-CGTATG--CTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * *
28628094 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGA
191 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCACTCAACCGACCGGA
* * **
28628159 GAGGCCGGCCGAAGAGGTAGAA-ACACAAGCCGGGGATCAGCCCGATCCCCCCTATGTGCTGTCG
256 GAGGCCGACCGAAGAGGTAGAATACACAAGCCGAGGATCAGCCCGATCCCCCCTACATGCTGTCG
* **** ** *
28628223 ATCCTACTGCTGGTCCTGCTGTTGTAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTC
321 ATCCTACTGCTGGTCCTACTACCATAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTC
28628288 CATAT
386 CATAT
* * *
28628293 GCTTATACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
28628341 AAAGTATGGG
Statistics
Matches: 378, Mismatches: 55, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
388 34 0.09
389 27 0.07
390 212 0.56
391 105 0.28
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (390 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGACCGCTCAG
CCGGCCAAAGAGGCAAGAATACGCAAGTCGAGGATTGGCCCGGTCCCCCTACGTGCTACCAATCC
TGCAACCACAACCCTAGATCCGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCACTCAACCGACCGGAGAGGC
CGACCGAAGAGGTAGAATACACAAGCCGAGGATCAGCCCGATCCCCCCTACATGCTGTCGATCCT
ACTGCTGGTCCTACTACCATAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:28629336 original size:185 final size:183
Alignment explanation
Indices: 28628965--28629385 Score: 522
Period size: 185 Copynumber: 2.3 Consensus size: 183
28628955 TCCAGCTGGG
* * * ** *
28628965 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGTGGGTGATCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGATCAA
* ** * * * *
28629030 CCGGCCGGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCGGTCCCCCCTGCATGCTGTCGATCCT
66 CCGACCGGAGAGACAGAATGCGTAAGTCGAGGACCAGCCGATCCCCCCTACATGCTGTCGATCCT
* * * *
28629095 GCTGCCGTAACCCTCGGTCCAGTCTGATCATAGACTGGGAATGAACTTTGTAT
131 GCTGCCGCAACCCTCGGTCCAGTCTGATCATACACTGGGAATGAACTCTATAT
* ** * *
28629148 GCTTAGACATGGAATGAACTCTGAATGCGAAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGATCAA
* *
28629213 CCGACTGGAGAGACAGAATGCGTAAGTCGAGGACCAGCCTGATCCCCCCATACGTGCTGTCGATC
66 CCGACCGGAGAGACAGAATGCGTAAGTCGAGGACCAGCC-GATCCCCCC-TACATGCTGTCGATC
* ** *
28629278 CTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCTATAT
129 CTGCTGCCGCAACCCTCGGTCCAGTCTGATCATACACTGGGAATGAACTCTATAT
* *
28629333 GCTTAGAC-TGGGGATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGT
1 GCTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGT
28629386 TCGGACATTC
Statistics
Matches: 201, Mismatches: 33, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
183 87 0.43
184 10 0.05
185 104 0.52
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGATCAA
CCGACCGGAGAGACAGAATGCGTAAGTCGAGGACCAGCCGATCCCCCCTACATGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCAGTCTGATCATACACTGGGAATGAACTCTATAT
Found at i:28630068 original size:26 final size:26
Alignment explanation
Indices: 28630030--28630082 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28630020 GGCTCAAACT
28630030 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28630056 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28630082 C
1 C
28630083 CTATACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28630415 original size:26 final size:26
Alignment explanation
Indices: 28630375--28630425 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
28630365 TAGTTCGATC
*
28630375 TTAGACTGGGAATGAACTCCTTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
28630401 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
28630426 CCTAAGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:28630613 original size:26 final size:26
Alignment explanation
Indices: 28630584--28630639 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
28630574 CTGATCCGAT
*
28630584 CTTAGAC-TACCAATGTACTCCGTATG
1 CTTAGACAT-CCAATGAACTCCGTATG
**
28630610 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGACATCCAATGAACTCCGTATG
28630636 CTTA
1 CTTA
28630640 AGCCAGCGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (26 bp):
CTTAGACATCCAATGAACTCCGTATG
Found at i:28631136 original size:26 final size:26
Alignment explanation
Indices: 28631086--28631138 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28631076 CTAGTCTGAT
**
28631086 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28631112 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28631138 C
1 C
28631139 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28631847 original size:26 final size:26
Alignment explanation
Indices: 28631809--28631861 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28631799 GGCTCAAACT
28631809 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28631835 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28631861 C
1 C
28631862 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28637133 original size:26 final size:26
Alignment explanation
Indices: 28637097--28637149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28637087 CCGGTTCGAT
*
28637097 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
*
28637123 CTTAGAATGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
28637149 C
1 C
28637150 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:28637792 original size:158 final size:156
Alignment explanation
Indices: 28637291--28637792 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 156
28637281 ACTTCGTATG
* * *
28637291 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGTGTGCGGGCGCTCAG
* * * ** * * * *
28637355 TCGATCAGAGAGGCAGAATGTGCAAGCCGAGGACCGACCCGGTCCCCCCTGCATGCTGTCCATCC
66 T-G-GCTGAAAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
*
28637420 TGCTGTCGCAACCCTCGGTTTGGTTTGAT
129 TGCTGTCGCAACCCTCGG-TTGGTCTGAT
** * * * * * * *
28637449 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCTACAAAAT-GAGCGTTCGTGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGTGTGCGGGCGCTCA
* * * * * * *
28637512 GTCGGTCGGAAAGGCATAATACACAAGCCAAGGATCGGCTCGATCCCCCTCTGCGTGCTATCGAT
65 GT-GG-CTGAAAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCC-CTGCATGCTGTCGAT
* * * **
28637577 CCCGCTGCCACAACCCTCGGTTCGG-CTAGGG
127 CCTGCTGTCGCAACCCTCGGTT-GGTCT-GAT
* *
28637608 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAG-GTGTGCGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGTGTGCGGGCGCTC-A
* * * **
28637672 CTGGCTGAATAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCTTCCCTGCATGCTGTCGATCC
65 GTGGCTGAA-AGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
*
28637737 TGCTATCGCAACCCTCGGTCTGGTCTGAT
129 TGCTGTCGCAACCCTCGGT-TGGTCTGAT
28637766 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
28637793 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 151 0.56
159 114 0.42
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGTGTGCGGGCGCTCAG
TGGCTGAAAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTG
CTGTCGCAACCCTCGGTTGGTCTGAT
Found at i:28638547 original size:26 final size:26
Alignment explanation
Indices: 28638518--28638570 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28638508 CCAATCTGAT
* *
28638518 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
28638544 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
28638570 C
1 C
28638571 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:28638584 original size:197 final size:194
Alignment explanation
Indices: 28637962--28638607 Score: 740
Period size: 189 Copynumber: 3.3 Consensus size: 194
28637952 TCCGACTGGG
* * * *
28637962 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
28638027 CCGAT-CGAAGAGGTAAAATACGCAAGCCAGGGATC-AGCCCGATCCCCCCTACGTGCTATTGAT
66 TCGATCCGAAGAGGTAAAATACGTAAGTCGGGGATCGA-CCCGAT-CCCCCTGCGTGCTGTCGAT
* * * * *
28638090 CCTGCTGCTAGTCCTGC-TACCGAACCCTCAGTCCAGTCTGATCTTAGATTGGGAATGAACTTTG
129 CCTGCTGCTGGTCCTGCTTA-C-AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTG
28638154 TAT
192 TAT
* * *
28638157 GCTTAGACATGGAATGAGCTCCGTATGCCAAAGCCAACCCACGAAACGA--GT----GTGCTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
28638216 TCGA-CCGGAGAGGCAAAATACGTAAGTTGGGGATCGACCCGATCCACCGTGCGTGCTGTCGATC
66 TCGATCCGAAGAGGTAAAATACGTAAGTCGGGGATCGACCCGATCC-CCCTGCGTGCTGTCGATC
* * ** *
28638280 CTGCTGTTGGTCCTGC-TACCGCAACCCTCGATCTGATCTGATCTTACACT-GGAATGAACTCTG
130 CTGCTGCTGGTCCTGCTTA---CAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTG
28638343 TAT
192 TAT
* *
28638346 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCAAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
28638411 TCGATCCGAAGAGGTAGAACACGTAAGTCGGGGATCGACCTGGTACCCCCTGCGTACTGCCAATC
66 TCGATCCGAAGAGGTAAAATACGTAAGTCGGGGATCGACCCGAT-CCCCCTGCGTGCTGTCGATC
*
28638476 TTGCTGCTGGTCCTGCTGTTACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTGT
130 CTGCTGCTGGTCCTGC--TTACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTGT
28638541 AT
193 AT
* * *
28638543 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
28638608 CTGGCCAAAT
Statistics
Matches: 380, Mismatches: 54, Indels: 32
0.82 0.12 0.07
Matches are distributed among these distances:
188 2 0.01
189 131 0.34
190 22 0.06
191 3 0.01
193 1 0.00
195 56 0.15
196 85 0.22
197 78 0.21
199 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGATCCGAAGAGGTAAAATACGTAAGTCGGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCC
TGCTGCTGGTCCTGCTTACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:28638701 original size:197 final size:196
Alignment explanation
Indices: 28637962--28638741 Score: 747
Period size: 196 Copynumber: 4.0 Consensus size: 196
28637952 TCCGACTGGG
* * * * *
28637962 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
28638027 CCGATCGAAGAGGTAAAATACGCAAGCCAGGGATC-AGCCCGATCCCCCCTACGTGCTATTGATC
66 CCGGCCGAAGAGGCAAAATACGCAAGCCGGGGATCGA-CCCGAACCCCCCTACGTGCTGTCGATC
* * * *
28638091 CTGCTGCTAGTCCTGCTACCG-AACCCTCAGTCCAGTCTGATCTTAGATTGGGAATGAACTTTGT
130 CTGCTGCTGGTCCTGCTACCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCTGT
28638155 AT
195 AT
* * * * *
28638157 GCTTAGACATGGAATGAGCTCCGTATGCCAAAGCCAACCCACGAAACGAGTGTGC--TCGGTC-G
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * *
28638219 ACC-G--G-AGAGGCAAAATACGTAAGTTGGGGATCGACCCGATCCACCGTGCGTGCTGTCGATC
66 -CCGGCCGAAGAGGCAAAATACGCAAGCCGGGGATCGACCCGAACCCCCCTACGTGCTGTCGATC
* ** *
28638280 CTGCTGTTGGTCCTGCTACCGCAACCCTC-GATCTGATCTGATCTTACACT-GGAATGAACTCTG
130 CTGCTGCTGGTCCTGCTACCGCAACCCTCAG-TCCAATCTGATCTTAGACTGGGAATGAACTCTG
28638343 TAT
194 TAT
* * *
28638346 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCAAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * * * * *
28638411 TCGATCCGAAGAGGTAGAACACGTAAGTCGGGGATCGACCTGGTA-CCCCCTGCGTACTGCCAAT
66 CCG-GCCGAAGAGGCAAAATACGCAAGCCGGGGATCGACC-CGAACCCCCCTACGTGCTGTCGAT
* **** *
28638475 CTTGCTGCTGGTCCTGCTGTTACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTG
129 CCTGCTGCTGGTCCTGCTACCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCTG
28638540 TAT
194 TAT
* *
28638543 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * *
28638608 CTGGCCAAATAGGCAGAATGTGCAAGCCGGGGACCGGCCCGAACCCCCCTACGTGTTGTCGATCC
66 CCGGCCGAAGAGGCAAAATACGCAAGCCGGGGATCGACCCGAACCCCCCTACGTGCTGTCGATCC
* * * * *** ** *
28638673 TACTACTGGTCCTAGCTGCCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGT
131 TGCTGCTGGTCCT-GCTACCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCTGT
28638738 AT
195 AT
28638740 GC
1 GC
28638742 CTAAGCCAAC
Statistics
Matches: 470, Mismatches: 98, Indels: 32
0.78 0.16 0.05
Matches are distributed among these distances:
189 130 0.28
190 23 0.05
191 4 0.01
192 2 0.00
193 5 0.01
195 51 0.11
196 132 0.28
197 123 0.26
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAAAATACGCAAGCCGGGGATCGACCCGAACCCCCCTACGTGCTGTCGATCC
TGCTGCTGGTCCTGCTACCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCTGTA
T
Found at i:28639791 original size:26 final size:26
Alignment explanation
Indices: 28639753--28639805 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28639743 GGCTCAAACT
*
28639753 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
28639779 CTTAGAC-ATGGAATGGACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
28639805 C
1 C
28639806 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28640990 original size:158 final size:157
Alignment explanation
Indices: 28640511--28641003 Score: 390
Period size: 158 Copynumber: 3.1 Consensus size: 157
28640501 GCTTAGCGAT
* * ** * *
28640511 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCATTTAG-CAGACCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-ACCGAA
* * * * * ** * *
28640575 GAGGTAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCCTATGTGCTGTCGATCCTGCTACTG
65 AAGCTAGAATGCGCAAGCTGGGGATC-GCCCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTGCCG
* ** * * *
28640640 CAATCCTTAGTCGGGTTTGATCTTAGAC-G
128 CAACCCTCGGTCCGGTCTGATCTTAGACTA
** * * * * ***
28640669 GAGAATGAACTTTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGCCGGTCGAA
1 G-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAA
* * ** * * * *
28640734 GAGGC-ATAACACG-AAG-TCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGC
65 -AAGCTAGAATGCGCAAGCT-GGGGATCG-CCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGC
* * * **
28640796 CACAACCCTCGAT-C-TTACTGGGGCTTAGA-TA
126 CGCAACCCTCGGTCCGGT-CT-GATCTTAGACTA
* *
28640827 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAACCGAA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAA
*
28640892 AAGCTAGAATGCGCAAGCTGGGGATCAGTCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGC
65 AAGCTAGAATGCGCAAGCTGGGGATC-GCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGC
*
28640957 AACCCTCGGTCCGGTCTGATCTTACACTA
129 AACCCTCGGTCCGGTCTGATCTTAGACTA
*
28640986 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
28641004 TGAGACTGGG
Statistics
Matches: 249, Mismatches: 69, Indels: 34
0.71 0.20 0.10
Matches are distributed among these distances:
156 1 0.00
157 10 0.04
158 156 0.63
159 77 0.31
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAAA
AGCTAGAATGCGCAAGCTGGGGATCGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAA
CCCTCGGTCCGGTCTGATCTTAGACTA
Found at i:28641747 original size:26 final size:26
Alignment explanation
Indices: 28641696--28641748 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28641686 GGCTCAAAAT
*
28641696 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28641722 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28641748 C
1 C
28641749 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28642103 original size:117 final size:117
Alignment explanation
Indices: 28641888--28642104 Score: 258
Period size: 117 Copynumber: 1.9 Consensus size: 117
28641878 TCTTACACTG
* * *
28641888 GGAATGAACTTCATATGCATAAGTCAACCCAAGAAATGAGCGTGCGGGCGCTAAGCCGGTTGAAG
1 GGAATGAACTTCATATGCATAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTAAGCCGGTCGAAG
** ** *
28641953 AGGCATCATGCGTAAGCTGAGGATCGACCCGGTCCGACTATGGCTTAGACAT
66 AGGCAGAATGCACAAGCAGAGGATCGACCCGGTCCGACTATGGCTTAGACAT
* * * * * **
28642005 GGAATGAACTTCGTATGCCTAAGCCAA-CCAACGAAACGAGTGTGTGGGCGCTCAGTTGGTCGAA
1 GGAATGAACTTCATATGCATAAGCCAACCCAA-GAAACGAGCGTGCGGGCGCTAAGCCGGTCGAA
*
28642069 GAGGCAGAATGCACAAGCCAG-GGATCGACTCGGTCC
65 GAGGCAGAATGCACAAG-CAGAGGATCGACCCGGTCC
28642105 CCCCTACGTG
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
116 4 0.05
117 76 0.93
118 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.30, T:0.18
Consensus pattern (117 bp):
GGAATGAACTTCATATGCATAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTAAGCCGGTCGAAG
AGGCAGAATGCACAAGCAGAGGATCGACCCGGTCCGACTATGGCTTAGACAT
Found at i:28642252 original size:275 final size:274
Alignment explanation
Indices: 28641721--28642262 Score: 798
Period size: 275 Copynumber: 2.0 Consensus size: 274
28641711 AACTCCTTAT
*
28641721 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACAAGTGTGCGGGCGCTCAG
* * *
28641786 TTGATCGGAGACGCAGAATGCTCAAGCCGGGGATCGACTCGGTCCCCCTACGTGCTGTCGATCCT
66 TTGATCGAAGACGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCTACGTGCTGTCGATCCT
** * *
28641851 GCTACCACAACCCTTGGTCTGATCTGATCTTACACTGGGAATGAACTTCATATGCATAAGTCAAC
131 GCTACCACAACCCTCAGTCCGATCTGATCTTACACTGGGAATAAACTTCATATGCATAAGTCAAC
** *** * *
28641916 CCAAGAAATGAGCGTGCGGGCGCTAAGCCGGTTGAAGAGGCATCATGCGTAAGCTGAGGATCGAC
196 CCAAGAAACAAGCGTGCGGGCGCTAAGCCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCGAC
28641981 CCGGTCCGACTATG
261 CCGGTCCGACTATG
* *
28641995 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACAAGTGTGCGGGCGCTCAG
* *
28642060 TTGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCC
66 TTGATCGAAGACGCAGAATGCACAAGCCAGGGATCGACTCGGT-CCCCCTACGTGCTGTCGATCC
* ** * * *
28642125 TGCTATCGTAACCCTCAGTCCGATCTGATCTTAGACTGTGAATAAACTTCGTATGCATAAGTCAA
130 TGCTACCACAACCCTCAGTCCGATCTGATCTTACACTGGGAATAAACTTCATATGCATAAGTCAA
* *
28642190 CCCATGAAACAAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAG-TCGAGGATCG
195 CCCAAGAAACAAGCGTGCGGGCGCTAAGCCGACCGAAGAGGCATAATGCGCAAGCT-GAGGATCG
* *
28642254 GCCTGGTCC
259 ACCCGGTCC
28642263 CCCTCTATGT
Statistics
Matches: 237, Mismatches: 29, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
274 101 0.43
275 136 0.57
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (274 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACAAGTGTGCGGGCGCTCAG
TTGATCGAAGACGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCTACGTGCTGTCGATCCT
GCTACCACAACCCTCAGTCCGATCTGATCTTACACTGGGAATAAACTTCATATGCATAAGTCAAC
CCAAGAAACAAGCGTGCGGGCGCTAAGCCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCGAC
CCGGTCCGACTATG
Found at i:28642355 original size:159 final size:158
Alignment explanation
Indices: 28641994--28642441 Score: 413
Period size: 159 Copynumber: 2.8 Consensus size: 158
28641984 GTCCGACTAT
* * * *
28641994 GGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGTGTGTGGGCGCTCA
1 GGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** **
28642059 GTTGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATC
66 GCCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATC
* * * *
28642124 CTGCTATCGTAACCCTCAGTCCGATCTG
131 CCGCTACCATAACCCTCAGTCCGAGCTG
** * * * * *
28642152 ATCTTAGAC-TGTGAATAAACTTCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGCTG
1 GGCTTAGACATG-GAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * *
28642216 AGCCGACCGAAGAGGCATAATGCGCAAGTC-GAGGATCGGC-CTGGTCCCCCTCTATGTGCTGTC
65 AGCCGACCGAAGAGGCAGAATGCACAAGCCAG-GGATCGACTC-GGTCCCCC-CTACGTGCTGTC
* * *
28642279 GGTCCCGCTACCATAACCTTCAGTTCG-GCTAG
127 GATCCCGCTACCATAACCCTCAGTCCGAGCT-G
* * * *
28642311 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
1 GGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* *** * * * * * * *
28642376 ACCGGTTGGAGAGGTAGATTACGCAAGCC-GAGGATC-AGCTCGGTCCCCCCTATGTGCTGCCGA
66 GCCGACCGAAGAGGCAGAATGCACAAGCCAG-GGATCGA-CTCGGTCCCCCCTACGTGCTGTCGA
28642439 TCC
129 TCC
28642442 TACTGTTGTA
Statistics
Matches: 231, Mismatches: 51, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 105 0.45
159 119 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATC
CCGCTACCATAACCCTCAGTCCGAGCTG
Found at i:28642814 original size:195 final size:186
Alignment explanation
Indices: 28642312--28642927 Score: 572
Period size: 184 Copynumber: 3.3 Consensus size: 186
28642302 TTCGGCTAGG
* ** * * * * **
28642312 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAGTGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAA
* ** * * * * * ** * *
28642377 CCGGTTGGAGAGGTAGATTACGCAAGCCGAGGATCAG-CTCGGTCCCCCCTATGTGCTGCCGAT-
66 CCAGTCAGAGAGGTAGAATGCGCAAGCCGGGGAT-AGACCCGGTCCACCCTGCGTGCTGTCAATC
* *
28642440 C--CTACTGTTGTAACCCTCGATCCGGTCCAATCTTAGATTGGGAATGAACTCCATAT
130 CTGCTACTG-TGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
* * *
28642496 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAATTCAACCCACGAAATGAGCGTGTGGGTGCTCA
1 GCTTAGACATGGAG-TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCA
* * * * * *
28642560 GCCAGTCGGAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTTAATC
65 ACCAGTCAGAGAGGTAGAATGCGCAAGCCGGGGATAGACCCGGTCCACCCTGCGTGCTGTCAATC
* *
28642625 TTGCTGCTAGTCTTGCTGTCGTAA-CCTCGATCCAGTCTAATCTTGGACTGGGAATGAACTCCAT
130 ---CTGCTA------CTGT-GTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCAT
28642689 AT
185 AT
** * * *
28642691 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAC-TGTGGGTGCTCA
1 GCTTAGACATGGAGTGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG-CGTGTGGGTGCTCA
* * * * *
28642755 ACC-GGCTAGAGAGGTAGAATGCGCAAGCTGGGGATCAG-CCTGGTCCACCCTGTGTGCTGTCGA
65 ACCAGTC-AGAGAGGTAGAATGCGCAAGCCGGGGAT-AGACCCGGTCCACCCTGCGTGCTGTCAA
* *
28642818 TCCTGCTAC--TGTAACCCTCGATCCTGTCCGATCTTAGACTGGGAATGAACTCCATAT
128 TCCTGCTACTGTGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
*
28642875 GCTTAGACTAGGGA-TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
1 GCTTAGAC-ATGGAGTGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
28642928 ACGAGCACTC
Statistics
Matches: 351, Mismatches: 59, Indels: 44
0.77 0.13 0.10
Matches are distributed among these distances:
183 9 0.03
184 175 0.50
185 4 0.01
186 1 0.00
188 1 0.00
190 3 0.01
192 6 0.02
194 2 0.01
195 137 0.39
196 13 0.04
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (186 bp):
GCTTAGACATGGAGTGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAA
CCAGTCAGAGAGGTAGAATGCGCAAGCCGGGGATAGACCCGGTCCACCCTGCGTGCTGTCAATCC
TGCTACTGTGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:28643622 original size:26 final size:26
Alignment explanation
Indices: 28643585--28643636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28643575 GCTCAAAATG
28643585 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
28643611 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
28643637 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:28644034 original size:159 final size:158
Alignment explanation
Indices: 28643609--28644075 Score: 415
Period size: 159 Copynumber: 2.9 Consensus size: 158
28643599 AACTCCATAT
* *
28643609 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGGGCGTGCGGGCGCTCAA
* * * *
28643674 TCGATCGGAGACGCAGAATGCT-CAAGCCGAGGAACGGCCCGATCCCCCTTACGTGCTGTCGATC
66 TCGATCGGAGAGGCAGAATG-TGCAAGCCGAGGATCGGCCCGGTCCCACTTACGTGCTGTCGATC
** * * *
28643738 CTGCTGCCACAACCCTCGGTCTGATCCAA
130 CCACTACCACAACCCTCAGTCGGATCCAA
* * * * *
28643767 TCTTACG-C-TGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAA-GGAGCGTGCGGGCGTT
1 GCTTA-GACAT-GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGG-GCGTGCGGGCGCT
* ** * * * * ** * * *
28643829 GAGCCGATCGAAGAGGCATAATGCGTAAGCCGAGGATCAACTCGGTCCCACTCTGCGTGGTG-CA
63 CAATCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCACT-TACGTGCTGTC-
* * ***
28643893 GGTCCCACTACCACAACCCTCAGTCCGGCT-GGG
126 GATCCCACTACCACAACCCTCAGT-CGGATCCAA
* *
28643926 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGGGCGTGCGGGCGCTCAA
* * * * * **
28643991 TCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCCTCCTACGTGCTACCGATCC
66 TCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCACTTACGTGCTGTCGATCC
** * *
28644056 TGCTATCGCAACCCTCAGTC
131 CACTACCACAACCCTCAGTC
28644076 CGGTTTGATC
Statistics
Matches: 236, Mismatches: 62, Indels: 23
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 113 0.48
159 114 0.48
160 6 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGGGCGTGCGGGCGCTCAA
TCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCACTTACGTGCTGTCGATCC
CACTACCACAACCCTCAGTCGGATCCAA
Found at i:28644131 original size:25 final size:26
Alignment explanation
Indices: 28644085--28644136 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
28644075 CCGGTTTGAT
28644085 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28644111 CTTAGACTGGG-ATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28644136 C
1 C
28644137 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28644830 original size:159 final size:157
Alignment explanation
Indices: 28644477--28644833 Score: 371
Period size: 157 Copynumber: 2.3 Consensus size: 157
28644467 ACTCTGTATT
* * *
28644477 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAGC
* ** *** * * *
28644542 TGGTCAGAGAGGCAGAATGCGTAAGTCGGGGACCTGTCGGGTCCCCCCTATGTGTTATCGATCCT
66 CGGTCAGAGAGGCAGAATGAATAAGTCGGGGACCAACCCGGTCCCCCCTACGTGCTATCGATCCT
* * * * *
28644607 GCTGCCTAACCCTCGGTCTGGTTTGAT
131 GCTGCCCAACCCTCGGTCCGATTGGAG
* * * *
28644634 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAG
* * * *
28644698 CCGGTCGGAGAGGCATAAT-AATAAAG-CTGGGGATCAACCCGGTCCCCCTCTGCGTGCTA-CTG
65 CCGGTCAGAGAGGCAGAATGAAT-AAGTC-GGGGACCAACCCGGTCCCCC-CTACGTGCTATC-G
* *
28644760 GTCCTGCTGCCACAACCCTCGGTCCGATTGGGG
126 ATCCTGCTGCC-CAACCCTCGGTCCGATTGGAG
* *
28644793 GTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
28644834 AAAATGGATG
Statistics
Matches: 163, Mismatches: 30, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
156 3 0.02
157 90 0.55
158 18 0.11
159 51 0.31
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAGC
CGGTCAGAGAGGCAGAATGAATAAGTCGGGGACCAACCCGGTCCCCCCTACGTGCTATCGATCCT
GCTGCCCAACCCTCGGTCCGATTGGAG
Found at i:28644994 original size:25 final size:25
Alignment explanation
Indices: 28644950--28645000 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
28644940 CCGATCCGAT
*
28644950 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACT-CGTATG
28644976 CTTAGACTAGG-ATGAACTCGTATG
1 CTTAGACTAGGAATGAACTCGTATG
28645000 C
1 C
28645001 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
25 7 0.29
26 10 0.42
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCGTATG
Found at i:28645708 original size:26 final size:26
Alignment explanation
Indices: 28645670--28645722 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28645660 GGCTCAAAAT
*
28645670 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACACCATATG
*
28645696 CTTAGAC-ATGGAATGAACACCGTATG
1 CTTAGACTA-GGAATGAACACCATATG
28645722 C
1 C
28645723 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCATATG
Found at i:28646103 original size:159 final size:157
Alignment explanation
Indices: 28645696--28646126 Score: 422
Period size: 159 Copynumber: 2.7 Consensus size: 157
28645686 ACTCCATATG
* * * * * *
28645696 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACGCACGAAACAAGCGTACGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * *
28645761 CGG-TCGAAAAGGTAGAATGCGCAAGCCA-GGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATC
66 CGGCT-G-AAAGGCAGAATGCGCAAG-TAGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATC
* ** *
28645824 CTGCTGCCGCAACCCTCAGTCCAGTCTGAT
128 CCGCAACCACAACCCTCAGTCCAGTCTGAT
* * * * * * *
28645854 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCTATGAAACGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * *
28645918 CCGACTGAAGAGGCATAATGCACAAGTAGGGGACCGACCCGGTCCCCCTCTACGTGCTGCC-AGT
65 CCGGCTGAA-AGGCAGAATGCGCAAGTAGGGGATCGACCCGGTCCCCC-CTACGTGCTGCCGA-T
* * *
28645982 CCCGCAACCACAACCCTCGGTCCGGT-TGGGT
127 CCCGCAACCACAACCCTCAGTCCAGTCT-GAT
* * * *
28646013 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * *
28646078 AGGCTGAGAAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCT
66 CGGCTGA-AAGGCAGAATGCGCAAGTAGGGGATCGACCCGGTCCCCCCT
28646127 GCATGCTGTT
Statistics
Matches: 217, Mismatches: 47, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 87 0.40
159 124 0.57
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.17
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCTGAAAGGCAGAATGCGCAAGTAGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCCG
CAACCACAACCCTCAGTCCAGTCTGAT
Found at i:28646211 original size:26 final size:26
Alignment explanation
Indices: 28646160--28646211 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
28646150 CGGTCCGATG
* **
28646160 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCACATGC
*
28646186 TTAGACTGGGGATGAACTCCACATGC
1 TTAGACTGGGAATGAACTCCACATGC
28646212 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCACATGC
Found at i:28646470 original size:196 final size:196
Alignment explanation
Indices: 28646136--28646501 Score: 500
Period size: 196 Copynumber: 1.9 Consensus size: 196
28646126 TGCATGCTGT
* * * *
28646136 TGCAACCCTCGGTCCGGTCCGATGTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGA
1 TGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGAGATGA
* ** * *
28646201 ACTCCACATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGGGCTCAACCGACCAGAGAGGCAGA
66 ACTCCACATGCCTAAGCCAACCCACAAAACGAGCGTACGGGGGCTCAACCGACCAGAGAGGCAGA
* *
28646266 ATGCACAAGCCGGGGATCGACCCGATCCCCTCTACGTGCTACCGATTCTGCTGTTGGTCCTACTA
131 ATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATTCTGCTGTTGGTCCTACTA
28646331 C
196 C
* *
28646332 TGCAACCCTCAGTCCGGTCTGATCTTAGATTAGGAATGAACTTCGTATGCTTAGACATGGAG-TG
1 TGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGAC-TGGAGATG
*** * * ** * *
28646396 AACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTATGGGTGCTCAGTCGATCGGAGAGGCAG
65 AACTCCACATGCCTAAGCCAACCCACAAAACGAGCGTACGGGGGCTCAACCGACCAGAGAGGCAG
* *
28646461 AATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCT
130 AATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTGCT
28646502 GTCAATCCTG
Statistics
Matches: 145, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
196 141 0.97
197 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (196 bp):
TGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGAGATGA
ACTCCACATGCCTAAGCCAACCCACAAAACGAGCGTACGGGGGCTCAACCGACCAGAGAGGCAGA
ATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATTCTGCTGTTGGTCCTACTA
C
Found at i:28646728 original size:159 final size:158
Alignment explanation
Indices: 28646380--28646744 Score: 421
Period size: 158 Copynumber: 2.3 Consensus size: 158
28646370 AACTTCGTAT
* * * * * *
28646380 GCTTAGACATGGAGTGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTATGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
* * * *
28646445 TCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCAAAGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* **
28646510 TGCTGTTACAACCCTTGGTCTGACCTGA
131 CGCTGCCACAACCCTTGGTCTGACCTGA
* * * * *
28646538 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCA
* * ** * * *
28646602 GCCGGCCGGAGAGGCATAATGCGTAAGCCAAAGATTGGCCC-AGTCCCCCTCTGCTTGCTGTCAG
65 GCCGACCGGAGAGGCAGAATGCACAAGCCAAAGATCGGCCCGA-TCCCCC-CTGCGTGCTGTCAA
* *
28646666 TCCCGCTGCCATAACCCTTGGTCTGA-CTGGG
128 TCCCGCTGCCACAACCCTTGGTCTGACCT-GA
*
28646697 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
28646745 GGTGTGCGGT
Statistics
Matches: 171, Mismatches: 31, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 91 0.53
159 77 0.45
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCAAAGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
CGCTGCCACAACCCTTGGTCTGACCTGA
Found at i:28646835 original size:26 final size:26
Alignment explanation
Indices: 28646806--28646858 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28646796 CTGATCCGAT
* *
28646806 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28646832 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28646858 C
1 C
28646859 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28647031 original size:26 final size:26
Alignment explanation
Indices: 28647002--28647054 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28646992 CCGGTCTGAT
*
28647002 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
28647028 CTTAGGCTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
28647054 C
1 C
28647055 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:28647255 original size:197 final size:196
Alignment explanation
Indices: 28646778--28647359 Score: 736
Period size: 197 Copynumber: 3.0 Consensus size: 196
28646768 TGCCGATTTT
* * * *
28646778 ACTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAATTCTGTATGCTTAGGCTGGG
1 ACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGG
* * * *
28646843 GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGTGGGTGCTCAGCCGGCCGGAGAG
66 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGAG
* * * * *
28646908 GCTGAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCCTGCGTGCTACAGATCTTGCTGTTGGTC
131 GCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGCGTGCTACCGATCCTGTTGCTGGTC
28646972 CC
195 CC
* * * * *
28646974 GCTGTCGCATCCTTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGGCTGGG
1 ACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGG
* * * *
28647039 GATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGAGTGCTCAGTCAGCCAGAGAG
66 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGAG
*
28647104 GCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCTCCTGCGTGCTACCGATCCTGTTGCTGGTC
131 GCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC-CCTGCGTGCTACCGATCCTGTTGCTGGTC
28647169 CC
195 CC
* * * *
28647171 ATTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-G
1 ACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGC-TGG
* * * * * * ** **
28647235 GAATGAACTCTGTGTGCCTAAGCCAACCCACAAAATGAGCGTACGGGCACTCAGTCGGCCAGAGA
65 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGA
* * * * *
28647300 GGCAGAATGCGCAAGTCGAGGACCGACCCGATCCCCCCCTGCGTGCTATCGATCCTGTTG
130 GGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCCTGCGTGCTACCGATCCTGTTG
28647360 TCGTAACCCT
Statistics
Matches: 330, Mismatches: 52, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
196 144 0.44
197 181 0.55
198 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (196 bp):
ACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGAG
GCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCTGTTGCTGGTCC
C
Found at i:28647619 original size:159 final size:159
Alignment explanation
Indices: 28647224--28647606 Score: 412
Period size: 159 Copynumber: 2.4 Consensus size: 159
28647214 AACTCCATAT
* * * *
28647224 GCTTAGACATGGAATGAACT-CTGTGTGCCTAAGCCAACCCACAAAATGAGCGTACGGGCACTCA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * *
28647288 GTCGGCCAGAGAGGCAGAATGCGCAAGTCGAGGACCGACCCGATCCCCCCCTGCGTGCTATCGAT
65 GTCGGCCAGAGAGGCACAATGCGCAAGCCGAGGACCGACCCGATCCCCCCCTGCGTGCTACCAAT
* * * ** *
28647353 CCTGTTGTCGTAACCCTCAGTCCAATTCGA
130 CCCGCTGCCACAACCCCCAGTCCAATTCGA
* * * * * *
28647383 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCGACTCACGAAACGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * *
28647447 GTCGACCAGAGAGGCACAATGCGTAAGCCGAGGATCGACCCGATCCTCCTCTGCGTGCTGCCAAT
65 GTCGGCCAGAGAGGCACAATGCGCAAGCCGAGGACCGACCCGATCCCCCCCTGCGTGCTACCAAT
*** * *
28647512 CCCGCTGCCACAACCCCC-GATCTGGTTGGG
130 CCCGCTGCCACAACCCCCAG-TCCAATTCGA
* * *
28647542 GCTTAGACATGGAATGAACTCCTTATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
28647607 CTGGCCGAAG
Statistics
Matches: 180, Mismatches: 40, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
158 2 0.01
159 176 0.98
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCGGCCAGAGAGGCACAATGCGCAAGCCGAGGACCGACCCGATCCCCCCCTGCGTGCTACCAATC
CCGCTGCCACAACCCCCAGTCCAATTCGA
Found at i:28648411 original size:26 final size:26
Alignment explanation
Indices: 28648359--28648411 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28648349 TAGCTAAAAT
* **
28648359 CTTAGACTTGGAATGAACTCTGCATG
1 CTTAGACATGGAATGAACTCCACATG
*
28648385 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCACATG
28648411 C
1 C
28648412 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCACATG
Found at i:28648842 original size:159 final size:159
Alignment explanation
Indices: 28648553--28648850 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 159
28648543 CTTAGACATA
** * *
28648553 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGACGCTGAGCTGGTCGAAGA
1 GAATGAACTCCGTATGCATAAGTCAACCCAAAAAACGAGCGTGCGGACGCTGAGCAGGCCGAAGA
* * * ** * *** *
28648618 GGCATAATACGCAAGCCGGGGATCGGCTCGGTCCACCTCTGTGTGTTGTCAATCCTGGTATCACA
66 GGCATAATACGCAAGCCGAGGATCGCCTCGGTCCACCTCTATGTGCAGCCAATCCCACTACCACA
28648683 AACCTCAGTCCAGTCCACTGTTACACTGG
131 AACCTCAGTCCAGTCCACTGTTACACTGG
* * * **
28648712 GAATGAACTTCGTATGCATAAGTCAACCCAAAAAATGAGTGTGCGGGTGCTGAGCAGGCCGAAGA
1 GAATGAACTCCGTATGCATAAGTCAACCCAAAAAACGAGCGTGCGGACGCTGAGCAGGCCGAAGA
* * * *
28648777 GGCATAATGCGTAAGCCGAGGATCGACCT-GG-CCCCTCTCTATGTGCAGCCGATCCCACTACCA
66 GGCATAATACGCAAGCCGAGGATCG-CCTCGGTCCAC-CTCTATGTGCAGCCAATCCCACTACCA
*
28648840 CAACCCTCAGT
129 CAAACCTCAGT
28648851 TCGATAGGGG
Statistics
Matches: 113, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 3 0.03
159 108 0.96
160 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
GAATGAACTCCGTATGCATAAGTCAACCCAAAAAACGAGCGTGCGGACGCTGAGCAGGCCGAAGA
GGCATAATACGCAAGCCGAGGATCGCCTCGGTCCACCTCTATGTGCAGCCAATCCCACTACCACA
AACCTCAGTCCAGTCCACTGTTACACTGG
Found at i:28649030 original size:96 final size:96
Alignment explanation
Indices: 28648860--28649039 Score: 225
Period size: 96 Copynumber: 1.9 Consensus size: 96
28648850 TTCGATAGGG
* * * * *
28648860 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCCGCCACTCAG
28648925 CCGGCCGGAGAGGCAGAATGCGAAAGCTGGT
66 CCGGCCGGAGAGGCAGAATGCGAAAGCTGGT
* ** ** **
28648956 GCTTAGACATGGAATCAATTCTGTATGCCTAAGCCAATTCATGAAATGAGCGTGCCGCCACTCAG
1 GCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCCGCCACTCAG
* * *
28649021 TCGGTCGGAGAGGTAGAAT
66 CCGGCCGGAGAGGCAGAAT
28649040 ACGCAAATCG
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
96 69 1.00
ACGTcount: A:0.28, C:0.24, G:0.29, T:0.19
Consensus pattern (96 bp):
GCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCCGCCACTCAG
CCGGCCGGAGAGGCAGAATGCGAAAGCTGGT
Found at i:28649151 original size:26 final size:26
Alignment explanation
Indices: 28649115--28649167 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28649105 TCGGTCTGAT
28649115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28649141 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28649167 C
1 C
28649168 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28649840 original size:26 final size:26
Alignment explanation
Indices: 28649811--28649863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28649801 CTGGTCCGAT
*
28649811 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28649837 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28649863 C
1 C
28649864 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28650941 original size:26 final size:26
Alignment explanation
Indices: 28650905--28650957 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28650895 CTGGTCCGAT
28650905 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28650931 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28650957 C
1 C
28650958 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28651488 original size:159 final size:159
Alignment explanation
Indices: 28651139--28651508 Score: 394
Period size: 158 Copynumber: 2.3 Consensus size: 159
28651129 AACTTTATAT
* *
28651139 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGC-GTGTGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTGTGGGCACTCA
* * * *** * *
28651203 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGTTCGATCCCCCCTGCGTGCTATCGATC
66 GCCAGCCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATC
*
28651268 CTGCTACCACAACCCTCGATCTGGTCTGA
131 CCGCTACCACAACCCTCGATCTGGTCTGA
* * * * * *** *
28651297 TCTTAGAC-TAGGAATGAACTCCATATGTCTAAGTCAACCCACGAAACGAGCATTG-GGGTGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTGTGGGCACTC
* * * * *
28651360 AGCCAG-CTGAAGAGGCATAATGTACAAGCCGAGGATCGACCCGATCCCTCTCTACGTGCTGCC-
65 AGCCAGCCAG-AGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCC-CCCTACGTGCTACCG
28651423 AGTCCCGCTACCACAACCCTC-AGTCTGG-CTGA
128 A-TCCCGCTACCACAACCCTCGA-TCTGGTCTGA
* *
28651455 GGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGGGCAT
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAT
28651509 ACGGGTGCTC
Statistics
Matches: 172, Mismatches: 32, Indels: 15
0.79 0.15 0.07
Matches are distributed among these distances:
157 3 0.02
158 89 0.52
159 79 0.46
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTGTGGGCACTCA
GCCAGCCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATC
CCGCTACCACAACCCTCGATCTGGTCTGA
Found at i:28651547 original size:159 final size:158
Alignment explanation
Indices: 28651139--28651554 Score: 446
Period size: 159 Copynumber: 2.6 Consensus size: 158
28651129 AACTTTATAT
* * ** **
28651139 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAG
* *** * *
28651204 CCGGCC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGTTCGATCCCCCCTGCGTGCTATCGATC
66 CCGGCCGA-AGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATC
*
28651268 CTGCTACCACAACCCTCGATCTGGTCTGA
130 CCGCTACCACAACCCTCGATCTGGTCTGA
* * * * * ** * *
28651297 TCTTAGAC-TAGGAATGAACTCCATATGTCTAAGTCAACCCACGAAACGAGCATTGGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCA
* * * * * * *
28651361 GCCAGCTGAAGAGGCATAATGTACAAGCCGAGGATCGACCCGATCCCTCTCTACGTGCTGCC-AG
65 GCCGGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCC-CCCTACGTGCTACCGA-
28651425 TCCCGCTACCACAACCCTC-AGTCTGG-CTGA
128 TCCCGCTACCACAACCCTCGA-TCTGGTCTGA
* *
28651455 GGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGGGCATACGGGTGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCA
* *
28651520 ACCGGCCGAAGAGGCAGAACGTGCAAGCCGGGGAT
65 GCCGGCCGAAGAGGCAGAATGTGCAAGCCGGGGAT
28651555 TGGCTCGGTC
Statistics
Matches: 206, Mismatches: 45, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 91 0.44
159 113 0.55
160 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAG
CCGGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
CGCTACCACAACCCTCGATCTGGTCTGA
Found at i:28651643 original size:26 final size:26
Alignment explanation
Indices: 28651614--28651666 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28651604 CCGATTCGAT
28651614 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28651640 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28651666 C
1 C
28651667 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28652011 original size:26 final size:26
Alignment explanation
Indices: 28651982--28652034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28651972 CCGGTTCGAT
28651982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28652008 CTTAGTCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28652034 C
1 C
28652035 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28652513 original size:26 final size:26
Alignment explanation
Indices: 28652484--28652562 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
28652474 CCAGTCCAAT
*
28652484 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGTATGAACTCCATATG
28652510 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGTATGAACTCCATATG
* *
28652536 CTTAGACTGGGTATGGACTCCGTATG
1 CTTAGACTGGGTATGAACTCCATATG
28652562 C
1 C
28652563 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGTATGAACTCCATATG
Found at i:28653275 original size:26 final size:26
Alignment explanation
Indices: 28653223--28653275 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
28653213 GGCTCAAACT
*
28653223 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCGATATG
28653249 CTTAGACAT-GGAATGAACTTCGA-ATG
1 CTTAGAC-TGGGAATGAAC-TCGATATG
28653275 C
1 C
28653276 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGATATG
Found at i:28653541 original size:158 final size:158
Alignment explanation
Indices: 28653248--28653591 Score: 360
Period size: 158 Copynumber: 2.2 Consensus size: 158
28653238 AACTCTATAT
* * * * *
28653248 GCTTAGACATGGAATGAACTTCGAATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACGAGCGTGCGGGCATTCAG
* * * * * ** * *
28653313 TCAGCTGGAGAGGCAGAATGCGCAAGACAGGATCGGGCCGATCCTCCTTTGTGTGCTGCCGGTCG
66 TCAGCCGGAGAGGCAAAATGCACAAGACAGGATCAGCCCGATCCTCCCCTGAGTGCTGCCGATCG
* *
28653378 CACTGCCACAACCCTCAGTCTGGT-TGGG
131 CACTGCCACAACCCTCAGTCTAGTCT-GA
* * *
28653406 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATAAAACGGGCGTGCGGACGC-TT-
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACGAGCGTGCGG--GCATTC
* * *
28653469 AG-CTGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCCCGATCC-CCCCTGAGTGCTGCCT
64 AGTC-AGCCGGAGAGGCAAAATGCACAAGACA-GGATCAGCCCGATCCTCCCCTGAGTGCTGCCG
*
28653532 ATC-CTACTGCCACAACCCTTAGTCTAGTCTGA
127 ATCGC-ACTGCCACAACCCTCAGTCTAGTCTGA
*
28653564 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
28653592 TTAGACTAGG
Statistics
Matches: 154, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.02
158 133 0.86
159 16 0.10
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACGAGCGTGCGGGCATTCAG
TCAGCCGGAGAGGCAAAATGCACAAGACAGGATCAGCCCGATCCTCCCCTGAGTGCTGCCGATCG
CACTGCCACAACCCTCAGTCTAGTCTGA
Found at i:28653606 original size:26 final size:26
Alignment explanation
Indices: 28653565--28653617 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28653555 CTAGTCTGAT
28653565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28653591 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
28653617 C
1 C
28653618 CTATGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28654040 original size:159 final size:157
Alignment explanation
Indices: 28653591--28654336 Score: 581
Period size: 159 Copynumber: 4.6 Consensus size: 157
28653581 ACTCCGTATG
* * * *
28653591 CTTAGACTAGGG-ATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACTAGCGTACGGGCGCTCAG
** * * ** *
28653655 CCGGTCGGTGAGGCAGAATGCACAAGCCGAGGATCGACCTGACCCACCCTGTATGCTATCGATCC
65 CCAATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCG-GTC-CCC----T-CTA-CG-TGC
* * *
28653720 TACTGCTAGTCCTGCTGCCGCAACCCTC-GATCTGGTCTGAT
121 TAC-G--A-TCCTGCTGCCACAACCCTCAG-TCTGATCCGAT
* * * *
28653761 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-TGAGCATACGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACT-AGCGTACGGGCGCTCAG
** * * * **** * * *
28653825 CCAGCCGGAGAGGCAGAATGCGCAAGCTGAGGACCGGTTTGGTCCCCCCCTTCGTGCTGTCGATC
65 CCAATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGT-CCCCTCTACGTGCT-ACGATC
*
28653890 CTGCTGCCACAACCCTCAGCCTGATCCGAT
128 CTGCTGCCACAACCCTCAGTCTGATCCGAT
* * * * * * * *
28653920 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACTATCGTTCGAGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACTAGCGTACGGGCGCTCAGC
* * * *
28653985 CAATTGGAGAGGCATAATGCACAAGCCGAGGATCGACCCGATCACCCTCTACGTGCTACCAGTCC
66 CAATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTC-CCCTCTACGTGCTACGA-TCC
* * *
28654050 CGCTGTCACAACCCTCAGTCTGA-CTG-T
129 TGCTGCCACAACCCTCAGTCTGATCCGAT
* **
28654077 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTC
1 --CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACTAGCGTACGGGCGCTC
* * *
28654141 AGCCGATCGGAGAGGCAGAATGCACAAGTCGAGGAT-AAGCCCGGTCCCCT-TACGTGCTACCGA
63 AGCCAATCGGAGAGGCAGAATGCACAAGCCGAGGATCGA-CCCGGTCCCCTCTACGTGCTA-CGA
* * ** *
28654204 TCCTACTGTCACAACCCTTGGTCTGGTCCGAT
126 TCCTGCTGCCACAACCCTCAGTCTGATCCGAT
* * * * * **
28654236 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGACATTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACTAGCGTACGGGCGCTCAGC
* * * * * *
28654301 CCACCAGAGAGGCAGGATGCGCAAGCCAAGGATCGA
66 CAATCGGAGAGGCAGAATGCACAAGCCGAGGATCGA
28654337 ACGGATGGTA
Statistics
Matches: 464, Mismatches: 95, Indels: 46
0.77 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 112 0.24
158 15 0.03
159 231 0.50
160 4 0.01
162 4 0.01
163 3 0.01
164 2 0.00
169 6 0.01
170 86 0.19
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACTAGCGTACGGGCGCTCAGC
CAATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCTCTACGTGCTACGATCCTG
CTGCCACAACCCTCAGTCTGATCCGAT
Found at i:28654335 original size:316 final size:316
Alignment explanation
Indices: 28653761--28654336 Score: 714
Period size: 316 Copynumber: 1.8 Consensus size: 316
28653751 CTGGTCTGAT
* * *
28653761 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGC
* ** *** **
28653826 CAGCCGGAGAGGCAGAATGCGCAAGCTGAGGACCGGTTTGGTCCCCCCCTTCGTGCTGTCGATCC
66 CAGCCGGAGAGGCAGAATGCACAAGCTGAGGACAAGCCCGGT--CCCCCTTCGTGCTACCGATCC
* *
28653891 TGCTGCCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
129 TACTGCCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *** * *
28653956 CCCACGAAACTATCGTTCGAGCGTTGAGCCAATTGGAGAGGCATAATGCACAAGCCGAGGATCGA
194 CCCACAAAACGATCGTGCGAGCATTCAGCCAACCAGAGAGGCAGAATGCACAAGCCAAGGATCGA
28654021 CCCGATCACCCTCTACGTGCTACCAGTCCCGCTGTCACAACCCTCAGTCTGACTGTGG
259 CCCGATCACCCTCTACGTGCTACCAGTCCCGCTGTCACAACCCTCAGTCTGACTGTGG
* * *
28654079 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAG
* *
28654143 CC-GATCGGAGAGGCAGAATGCACAAG-TCGAGGATAAGCCCGGT-CCCCTTACGTGCTACCGAT
65 CCAG-CCGGAGAGGCAGAATGCACAAGCT-GAGGACAAGCCCGGTCCCCCTT-CGTGCTACCGAT
* ** * *
28654205 CCTACTGTCACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
127 CCTACTGCCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
28654270 AACCCACAAAACGAGT-GTGCG-GACATTCAGCCCACCAGAGAGGCAGGATGCGCAAGCCAAGGA
192 AACCCACAAAACGA-TCGTGCGAG-CATTCAGCCAACCAGAGAGGCAGAATGCACAAGCCAAGGA
28654333 TCGA
255 TCGA
28654337 ACGGATGGTA
Statistics
Matches: 216, Mismatches: 36, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
315 7 0.03
316 118 0.55
317 3 0.01
318 87 0.40
319 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (316 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCACAAGCTGAGGACAAGCCCGGTCCCCCTTCGTGCTACCGATCCTA
CTGCCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACAAAACGATCGTGCGAGCATTCAGCCAACCAGAGAGGCAGAATGCACAAGCCAAGGATCGACC
CGATCACCCTCTACGTGCTACCAGTCCCGCTGTCACAACCCTCAGTCTGACTGTGG
Found at i:28655193 original size:26 final size:26
Alignment explanation
Indices: 28655164--28655216 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28655154 GTCCGATCTC
28655164 AGACT-GGGAATGAACTCCGTATGCTT
1 AGACTAGGG-ATGAACTCCGTATGCTT
*
28655190 AGACTAGGGATGAACTTCGTATGCTT
1 AGACTAGGGATGAACTCCGTATGCTT
28655216 A
1 A
28655217 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
AGACTAGGGATGAACTCCGTATGCTT
Found at i:28655387 original size:26 final size:26
Alignment explanation
Indices: 28655358--28655413 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
28655348 CTGATCCGAT
* *
28655358 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATA
28655384 CTTAGACATGGAATGAACTCCGTATA
1 CTTAGACATGGAATGAACTCCGTATA
28655410 CTTA
1 CTTA
28655414 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:28655864 original size:159 final size:156
Alignment explanation
Indices: 28655384--28655886 Score: 403
Period size: 159 Copynumber: 3.2 Consensus size: 156
28655374 ACTCTGTATG
* * * * * * *
28655384 CTTAGACATGGAATGAACTCCGTATACTTAAGCCAACCCATGAAA-TGAGCATGCGGGCACTCAG
1 CTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGA-CGTGTGGG-GCTCAG
* * * ** * * *
28655448 TCGACCGGTGAGGCAGAAT--GCATTAGCCGGGGATCGGTTCGATCCCCCCTGCGTGCTATCAAT
64 CCGACCGGAGAGGCAGAATACGCA--AGTCGGGGATCGACTCGACCCCCCCTGCGTGCT-GCCAT
28655511 CCTGCTATCGCAACCCTCGGTCCGATCTGAT
126 CCTGCTATCGCAACCCTCGGTCCGATCTGAT
* * * * * *
28655542 CTTAGACT-GGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACA-A-GTGTCCGGGCATTG
1 CTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGACGTGT-GGGGC--TC
* * * * * * *
28655604 AGCCGACCGGAAAGGCATAATACGTAAGTCGGGGATCGACCCGGTCCACCTCTGCGTGCTGCCAG
62 AGCCGACCGGAGAGGCAGAATACGCAAGTCGGGGATCGACTC-GACCCCCCCTGCGTGCTGCCA-
* * * * * *
28655669 TCCCGCTACCACAACCCTCAGTCTG-GCTGGGA-
125 TCCTGCTATCGCAACCCTCGGTCCGATCT--GAT
* *
28655701 CTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTGTGGGTGCTCAAC
1 CTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGACGTGTGGG-GCTCAGC
*
28655766 CGACCAGAGAGGCAGAATACGCAAGTCGGGGATCGACTCGACCCCCCCCTGCGTGCTGCCGATCC
65 CGACCGGAGAGGCAGAATACGCAAGTCGGGGATCGACTCGA-CCCCCCCTGCGTGCTGCC-ATCC
* * * *
28655831 TACTGTCGCAACCTTCGGTCCGATTTGAT
128 TGCTATCGCAACCCTCGGTCCGATCTGAT
* *
28655860 CTTAGA-CTGAGAATAAACTCCGTATGC
1 CTTAGATATG-GAATGAACTCCGTATGC
28655887 TTAGATTGGG
Statistics
Matches: 262, Mismatches: 63, Indels: 39
0.72 0.17 0.11
Matches are distributed among these distances:
156 3 0.01
157 2 0.01
158 78 0.30
159 164 0.63
160 9 0.03
161 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (156 bp):
CTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGACGTGTGGGGCTCAGCC
GACCGGAGAGGCAGAATACGCAAGTCGGGGATCGACTCGACCCCCCCTGCGTGCTGCCATCCTGC
TATCGCAACCCTCGGTCCGATCTGAT
Found at i:28656274 original size:26 final size:26
Alignment explanation
Indices: 28656236--28656288 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
28656226 CCGGCCTGAT
28656236 CTTAGACTGGGAAAGAACT-TCGTATG
1 CTTAGACTGGGAAAGAACTCT-GTATG
*
28656262 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAAAGAACTCTGTATG
28656288 C
1 C
28656289 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGTATG
Found at i:28656610 original size:160 final size:158
Alignment explanation
Indices: 28656261--28656724 Score: 378
Period size: 160 Copynumber: 2.9 Consensus size: 158
28656251 AACTTCGTAT
* * * * ** *
28656261 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGTGCTGA
1 GCTTAGAC-TGGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * ** * * *** * * *
28656325 GCTGGCTGGAGAGGCAAAATGCGCAAG-TCGGGGATCAACCTGGTCCCCCCTACGTGCAGTCGAT
65 GCCGACCAGAGAGGCAAAATGCGAAAGCT-GGGGATCGACCCAATCCCCCCTGCATGCTGTCGAT
* * * * * * * ** *
28656389 CCTGCTACCGCAACCTTCAGTTCGATCCGA
129 CCTACTGCCACAACCCTCAATCCGGTTGGG
* * * * * *
28656419 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACGCC-CGGAACGAGCGTGCGGGCGCTGA
1 GCTTAGACTGGGAATGAACTCTCTATGCCTAAGCCAAC-CCACGAAACGAGCGTGCGGGCACTCA
* * * * * * *** * *
28656483 GCCGACCGGAGAGGCATAATTGTGCAAGTTGGGGATCGGCCCAATCTCTTTCTGCGTGCTGTCGG
65 GCCGACCAGAGAGGCA-AAATGCGAAAGCTGGGGATCGACCCAATC-CCCCCTGCATGCTGTCGA
28656548 TCCTACTGCCACAACCCTCAATCCGGTTGGG
128 TCCTACTGCCACAACCCTCAATCCGGTTGGG
* *
28656579 GCTTAGACAT-GGAATGAACTCTCTGTGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* *
28656643 GCCGGCCAGAGAGGCAAAATGCGAAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
65 GCCGACCAGAGAGGCAAAATGCGAAAGCTGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATC
* *
28656708 CTACTGTCGCAACCCTC
130 CTACTGCCACAACCCTC
28656725 GGTATGGTCC
Statistics
Matches: 243, Mismatches: 56, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 95 0.39
159 47 0.19
160 99 0.41
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCAGAGAGGCAAAATGCGAAAGCTGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATCC
TACTGCCACAACCCTCAATCCGGTTGGG
Found at i:28656754 original size:158 final size:156
Alignment explanation
Indices: 28656262--28656764 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 156
28656252 ACTTCGTATG
* * * *
28656262 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGTGCTGAG
1 CTTAGA-ATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * * *
28656326 CTGGCTGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCTGGTCCCCCCTACGTGCAGTCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGT-GGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * *
28656391 TGCTACCGCAACCTTCAGTTCGATCCGAT
129 TACTGCCGCAACCCTCAGTT-GGTCCGAT
* * *
28656420 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACGCC-CGGAACGAGCGTGCGGGCGCTGAG
1 CTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAAC-CCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * *** *
28656484 CCGACCGGAGAGGCATAATTGTGCAAGTTGGGGATCGGCCCAATCTCTTTCTGCGTGCTGTCGGT
65 CCGGCCGGAGAGGCA-AAATGCGCAAG-TGGGGATCGACCCGATC-CCCCCTGCGTGCTGTCGAT
* * * ** **
28656549 CCTACTGCCACAACCCTCAATCCGGTTGGGG
127 CCTACTGCCGCAACCCTCAGT-TGGTCCGAT
* * * * *
28656580 CTTAGACAT-GGAATGAACTCTCTGTGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * *
28656644 CCGGCCAGAGAGGCAAAATGCGAAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAG-TGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
28656709 TACTGTCGCAACCCTCGGTATGGTCCGAT
129 TACTGCCGCAACCCTCAGT-TGGTCCGAT
* *
28656738 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCTGTATGC
28656765 TTAGACTCTG
Statistics
Matches: 267, Mismatches: 69, Indels: 18
0.75 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 120 0.45
159 47 0.18
160 97 0.36
161 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CGGCCGGAGAGGCAAAATGCGCAAGTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTA
CTGCCGCAACCCTCAGTTGGTCCGAT
Found at i:28657499 original size:26 final size:26
Alignment explanation
Indices: 28657461--28657513 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28657451 GGCTTAAAAT
*
28657461 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28657487 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28657513 C
1 C
28657514 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28657830 original size:159 final size:157
Alignment explanation
Indices: 28657486--28657932 Score: 484
Period size: 159 Copynumber: 2.8 Consensus size: 157
28657476 AACTCTGTAT
* * * *
28657486 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCTTGCGGGCGCTCAG
* * **
28657551 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
65 TCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCC
** * *
28657616 TGCTGCCACAACCCTCAGTTCGGCCTAA
130 CACTGCCACAACCCTCAGTCCAGCCTAA
* * * ** * * *
28657644 TCTCATACTCGGAATGAACTCCGTATGCATAAGTTAACCCATGAAACGAGCTTGCGGGCGCTGAA
1 GCTTAGACT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCTTGCGGGCGCTCAG
* * * ** * * *
28657709 CCGACCGAAGAGGCATAATGTACAAGTCGGGGATCGACCCGATCCCCCTCTGTGTGCTGTCGGTC
65 TCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGTGTGCTGTCGATC
* **
28657774 CCACTGCCACAACCCTCGGTCCAG-CTGGG
129 CCACTGCCACAACCCTCAGTCCAGCCT-AA
* * * * *
28657803 GCTTAGACGTGGAATGAACTCCCTATGCCA-AAGCCAACCGACGAAACGGGCTTGCGGGCACCCA
1 GCTTAGAC-TGGAATGAACTCCGTATG-CATAAGCCAACCCACGAAACGAGCTTGCGGGCGCTCA
* *
28657867 GTCGACCGGAGAGGCAGAATGCGCAAGCCACGGATCGACCCGATCCCCCCTGTGTGCTGCCGATC
64 GTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATC
28657932 C
129 C
28657933 TGCTATCGCA
Statistics
Matches: 230, Mismatches: 54, Indels: 10
0.78 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 107 0.47
159 119 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCTTGCGGGCGCTCAGT
CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCC
ACTGCCACAACCCTCAGTCCAGCCTAA
Found at i:28658014 original size:26 final size:26
Alignment explanation
Indices: 28657962--28658014 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28657952 CCGGTCTGAT
* * *
28657962 CTTAGTCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
28657988 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
28658014 C
1 C
28658015 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:28659220 original size:158 final size:157
Alignment explanation
Indices: 28658717--28659321 Score: 458
Period size: 159 Copynumber: 3.8 Consensus size: 157
28658707 ACTTCGTATG
* * * * * * * *
28658717 CTTAGAC-ATGGAATAAAGTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAA
1 CTTAGACTA-GGAATGAACTCCATATGCCAAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * ** * * **
28658781 CTGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTACGTGCTGTCGATC
65 CCGACTGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGT-CCCCCTTGTGTGCTGTCGATC
* *
28658846 CTACTACCGTAACCCTCGGTCCAGTCCAAT
129 CTACTACCGTAACCCTCGGTCGA-TCTAAT
* * * ** *
28658876 CTTAGACTGGGAATGAACTCCATATG-CATAAGTCAACCCACAAAATGAGCGTGTGGATGCTGAG
1 CTTAGACTAGGAATGAACTCCATATGCCA-AAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * * *** * * * *
28658940 CCGA-TCGAAGTGGCATAATGCGTTGGTCAGGGATCGACCCGGTTCCCCTCTGTGTGCTG-CCAG
65 CCGACT-GGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCT-TGTGTGCTGTCGA-
** * * ***
28659003 TCCCGCTGCCAG-AACCCTCGGTCTG-GCTGGGG
127 TCCTACTACC-GTAACCCTCGGTC-GATCT-AAT
* * *
28659035 CTTAGAC-ATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCATATGCCAAAGCCAACCCACAAAATGAG-CGTGCGGGCGCTCA
*
28659098 GCCGACTGGAGAGGCAGAATGCGTAAGCCAAGGATCGACCCGGTCCCCCTTGTGTGCTGTCGATC
64 GCCGACTGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTTGTGTGCTGTCGATC
* * *
28659163 CTATTACCGTAACCCTCAGTTCGATCTTAT
129 CTACTACCGTAACCCTC-GGTCGATCTAAT
* * * * * *
28659193 CATAGACTAGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGTTCAGC
1 CTTAGACTAGGAATGAACTCCATATGCCAAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
* * * *
28659258 CTG-TTGGAGAGGCATAATGCGCAAGCCGAGGATC-AGCCCGGTCCCTCTT-TACGTGCTGTCGA
66 C-GACTGGAGAGGCAGAATGCGCAAGCCAAGGATCGA-CCCGGTCCCCCTTGT--GTGCTGTCGA
28659320 TC
127 TC
28659322 TCGCAACCGG
Statistics
Matches: 345, Mismatches: 79, Indels: 44
0.74 0.17 0.09
Matches are distributed among these distances:
157 3 0.01
158 126 0.37
159 212 0.61
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCATATGCCAAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
CGACTGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTTGTGTGCTGTCGATCCT
ACTACCGTAACCCTCGGTCGATCTAAT
Found at i:28659415 original size:26 final size:26
Alignment explanation
Indices: 28659364--28659416 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
28659354 CTGATTTGAT
*
28659364 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
28659390 CTTAGATTGGGGATGAACTAC-ATATG
1 CTTAGACTGGGAATGAACT-CTATATG
28659416 C
1 C
28659417 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:28659782 original size:26 final size:26
Alignment explanation
Indices: 28659744--28659796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28659734 CCGATCCAAT
*
28659744 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28659770 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28659796 C
1 C
28659797 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28660113 original size:159 final size:159
Alignment explanation
Indices: 28659769--28660269 Score: 436
Period size: 159 Copynumber: 3.2 Consensus size: 159
28659759 AACTCTGTAT
* * *
28659769 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * **
28659834 CCGACCAGAGAGGCAGAATGTGCAAGCTGGAGA-CGGGC-C--TAACCCC-CTGCGTGTTGTTGA
66 CCGACCGGAGAGGCAGAATGTGTAAGCTGGGGATC-GACTCGGT-CCCCCTCTGCGTGATGCAGA
* * *
28659894 TCTTGCTGCCATAACCCTCGGTCTGATCCGA
129 TCTCGCTACCACAACCCTCGGTCTGATCCGA
* * * * * * * *
28659925 TCTTAGA-TTGGGAATGAACT-CTGTTTGCCTAGGTCAACCCACGAAACGGGTGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTC
* * *
28659988 AGCCGCCCGGAGAGGCATAATGTGTAAGTTGGGGATCGACTCGGTCCCCCTCTGCGTGATGCCAG
64 AGCCGACCGGAGAGGCAGAATGTGTAAGCTGGGGATCGACTCGGTCCCCCTCTGCGTGATG-CAG
* *
28660053 -TCTCGCTACCACAACCCTCGGTCTGA-CTGGG
128 ATCTCGCTACCACAACCCTCGGTCTGATC-CGA
* * * *
28660084 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGGCGTGCTGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
** * * *
28660149 CTAATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGA-TCCGGTCCCCCT-TGCGTGCTGTC-GA
66 CCGACCGGAGAGGCAGAATGTGTAAGCTGGGGATCGACT-CGGTCCCCCTCTGCGTGATG-CAGA
* * *
28660211 TC-CTGCTGCCACAACCCTCGTTCTGATCCAA
129 TCTC-GCTACCACAACCCTCGGTCTGATCCGA
* * *
28660242 TCTTTGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCTTATGC
28660270 TTAGGCATGG
Statistics
Matches: 274, Mismatches: 55, Indels: 30
0.76 0.15 0.08
Matches are distributed among these distances:
155 2 0.01
156 80 0.29
157 5 0.02
158 60 0.22
159 123 0.45
160 4 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGTGTAAGCTGGGGATCGACTCGGTCCCCCTCTGCGTGATGCAGATC
TCGCTACCACAACCCTCGGTCTGATCCGA
Found at i:28660414 original size:188 final size:184
Alignment explanation
Indices: 28660084--28660457 Score: 442
Period size: 188 Copynumber: 2.0 Consensus size: 184
28660074 TCTGACTGGG
* * * * *
28660084 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGGCGTGCTGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCTGGAGCTCAA
* * * ** * * * *
28660149 CTAATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGATCCGGTCCCCCTTGCGTGCTGTCGATCC
66 CTAATCGAAAAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCCCCCTGCGTGATGTCGATCC
* *
28660214 TGCTGCCACAACCCTCGTTCTGATCCAATCTTTGACTGGGAATGAACTCCGTAT
131 TGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* **
28660268 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGTACGGGAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGC-T---GGAGC
* * * *
28660333 TCAACTGATCGAAAAGGTAGAATGCGCAAGCCAGGGACCGGCCCGGTCCCCCCTGCTTGATGTCG
62 TCAACTAATCGAAAAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCCCCCTGCGTGATGTCG
* * * * * * *
28660398 ATCCTGTTGTCACAACCCTTGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTAT
127 ATCCTGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
28660456 GC
1 GC
28660458 CTAAGTCAAC
Statistics
Matches: 156, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
184 49 0.31
185 1 0.01
188 106 0.68
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCTGGAGCTCAA
CTAATCGAAAAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCCCCCTGCGTGATGTCGATCC
TGCTGCCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:28660548 original size:505 final size:498
Alignment explanation
Indices: 28659703--28660819 Score: 1298
Period size: 505 Copynumber: 2.2 Consensus size: 498
28659693 CTACCGATCC
* * *
28659703 TGCTGCTGGTCCTGTTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCTGTA
1 TGCTGCTGATCCTGCTGCCGCAACCCTCGAT-CGATCCAATCTTAGACTGGGAATGAACTCCGTA
* *
28659768 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTA
65 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* * * * * * * *
28659833 GCCGACCAGAGAGGCAGAATGTGCAAGCTGGAGACGGGCCTAACCCCCTGCGTGTTGTTGATCTT
130 ACCGACCAGAAAGGCAGAATGCGCAAGCAGGAGACGGCCCTAACCCCCTGCGTGATGTCGATCCT
* * * *
28659898 GCTGCCATAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTCTGTTTGCCTAGGTCAAC
195 GCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * * *** ***
28659963 CCACGAAACGGGTGTGCGGGCACTGAGCCGCCCGGAGAGGCATAATGTGTAAGTTGGGGATCGAC
260 CCACGAAACGAGCGTGCGGGCACTGAGCAGCCCGGAGAGGCATAATGCACAAGCCAGGGATCGAC
* * *
28660028 TCGGTCCCCCTCTGCGTGATGCCAGTCTCGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACA
325 CCGGTCCCCCTCTGCGTGATGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACA
* * * * * * *
28660093 TGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGGCGTGCTGGT-GCTCAGCTAATCGG
390 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGC-GATGGCTCAACTAACCGA
* * * * * *
28660157 AGAGGCAGAATGCGTAAGCTGGGGATCGATCCGGT-CCCCCTTGCG
454 AGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCAT-CG
* * *
28660202 TGCTG-TCGATCCTGCTGCCACAACCCTCGTTCTGATCCAATCTTTGACTGGGAATGAACTCCGT
1 TGCTGCT-GATCCTGCTGCCGCAACCCTCGATC-GATCCAATCTTAGACTGGGAATGAACTCCGT
* *
28660266 ATGCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGTACGGGA
64 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT--G--CGGGA
* * * * *
28660331 GCTCAACTGATC-GAAAAGGTAGAATGCGCAAGCCAGG-GACCGGCCCGGT-CCCCCCTGCTTGA
125 GCTCAACCGACCAG-AAAGGCAGAATGCGCAAG-CAGGAGA-CGGCCC--TAACCCCCTGCGTGA
* * * * *
28660393 TGTCGATCCTGTTGTCACAACCCTTGGTCTGGTTCGATCTTAGACTGGGAATGAACT-TCGTATG
185 TGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCT-GTATG
* *
28660457 CCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGCTAG-CCGGAGAGGCATAATGCACAAG
249 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC-AGCCCGGAGAGGCATAATGCACAAG
** * * * *
28660521 CCAGGGATCGACCCGGTCCCCCTCTGCGTTTTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCT
313 CCAGGGATCGACCCGGTCCCCCTCTGCGTGATGCCAGTCCCGCTACCACAACCCTCGGTCCGACT
**
28660586 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGATGGCT
378 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGATGGCT
* **
28660651 CAATTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCATCG
443 CAACTAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCATCG
* * * * *
28660707 TGCTGCTGATCCTGCTGTCGTAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGTA
1 TGCTGCTGATCCTGCTGCCGCAACCCTCGATCGA-TCCAATCTTAGACTGGGAATGAACTCCGTA
* * * *
28660772 TGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACTCACGAAAC
65 TGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
28660820 AAACATGCGG
Statistics
Matches: 516, Mismatches: 84, Indels: 30
0.82 0.13 0.05
Matches are distributed among these distances:
498 2 0.00
499 107 0.21
501 1 0.00
502 1 0.00
503 29 0.06
504 13 0.03
505 354 0.69
506 9 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (498 bp):
TGCTGCTGATCCTGCTGCCGCAACCCTCGATCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAA
CCGACCAGAAAGGCAGAATGCGCAAGCAGGAGACGGCCCTAACCCCCTGCGTGATGTCGATCCTG
CTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCACTGAGCAGCCCGGAGAGGCATAATGCACAAGCCAGGGATCGACC
CGGTCCCCCTCTGCGTGATGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGATGGCTCAACTAACCGAAG
AGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCATCG
Found at i:28660616 original size:159 final size:160
Alignment explanation
Indices: 28660268--28660702 Score: 425
Period size: 159 Copynumber: 2.7 Consensus size: 160
28660258 AACTCCGTAT
* *
28660268 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGTACGGGAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCG-A-GGCAGC
* * * *
28660333 TCAACTGATCGAAAAGGTAGAATGCGCAAGCCAGGGACCGGCCCGGTCCCCCCTGCTTGATGTCG
64 TCAACTGACCGAAAAGGCAGAATGCACAAGCCAGGGACCGACCCGGTCCCCCCTGCTTGATGTCG
* * * * * *
28660398 ATCCTGTTGTCACAACCCTTGGTCTGGTTCGA
129 ATCCCGCTGCCACAACCCTCGGTCCGGCTCGA
* * * *
28660430 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCG-GGCA-CT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGGCAGCT
* * * * * * *
28660492 GAGCT-AGCCGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTT-TTGT
65 CAACTGA-CCGAAAAGGCAGAATGCACAAGCCAGGGACCGACCCGGTCCCCC-CTGC-TTGATGT
* * *
28660555 CGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
127 CGATCCCGCTGCCACAACCCTCGGTCCGGCTCGA
* * * *
28660589 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGATG--GCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGGCAGCTC
* * * * * * * *
28660652 AATTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCC
66 AACTGACCGAAAAGGCAGAATGCACAAGCCAGGGACCGACCCGGTCCCCCC
28660703 ATCGTGCTGC
Statistics
Matches: 221, Mismatches: 44, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 42 0.19
159 124 0.56
160 4 0.02
161 1 0.00
162 49 0.22
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGGCAGCTC
AACTGACCGAAAAGGCAGAATGCACAAGCCAGGGACCGACCCGGTCCCCCCTGCTTGATGTCGAT
CCCGCTGCCACAACCCTCGGTCCGGCTCGA
Found at i:28660777 original size:26 final size:26
Alignment explanation
Indices: 28660748--28660800 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28660738 CCAGTCCGAT
* *
28660748 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28660774 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28660800 C
1 C
28660801 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28660858 original size:13 final size:13
Alignment explanation
Indices: 28660840--28660864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28660830 GTGCCCAGCT
28660840 GACCGGAGAGGCC
1 GACCGGAGAGGCC
28660853 GACCGGAGAGGC
1 GACCGGAGAGGC
28660865 AGAATGTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
GACCGGAGAGGCC
Found at i:28661343 original size:26 final size:26
Alignment explanation
Indices: 28661305--28661357 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28661295 GGCTCAAACT
28661305 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
28661331 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
28661357 C
1 C
28661358 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28661842 original size:26 final size:26
Alignment explanation
Indices: 28661806--28661857 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
28661796 CCGGTTTGAT
*
28661806 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28661832 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28661858 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28662352 original size:26 final size:26
Alignment explanation
Indices: 28662311--28662363 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28662301 CTGGTCCGAT
28662311 CTTAGACGGGGAATGAACTCCATATG
1 CTTAGACGGGGAATGAACTCCATATG
28662337 CTTAGACTGGGG-ATGAACTCCATATG
1 CTTAGAC-GGGGAATGAACTCCATATG
28662363 C
1 C
28662364 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCATATG
Found at i:28662643 original size:26 final size:25
Alignment explanation
Indices: 28662608--28662657 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
28662598 CTCAAACTGC
28662608 TAGACTGGAATGAACTCTGTATGCT
1 TAGACTGGAATGAACTCTGTATGCT
28662633 TAGACATGGAATGAACTCTGTATGC
1 TAGAC-TGGAATGAACTCTGTATGC
28662658 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (25 bp):
TAGACTGGAATGAACTCTGTATGCT
Found at i:28663007 original size:25 final size:26
Alignment explanation
Indices: 28662973--28663024 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
28662963 TCGGTCTGAT
28662973 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
28662998 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28663024 C
1 C
28663025 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28663246 original size:209 final size:208
Alignment explanation
Indices: 28662789--28663271 Score: 553
Period size: 208 Copynumber: 2.3 Consensus size: 208
28662779 TCCGACTAGG
* ** * ** * *
28662789 GCTTAGGC-ATGGAATGAACTCCCTATGCCTAAGCCATCCCATGAAACGAGCGTGTGGGCACTTA
1 GCTTAGACTATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * * *
28662853 GCCAGCCTGAGGGTCGACCAGAGAGGTAGAATGCACAAGTCGAGGATCTGCCCGGTCTGCCCCTT
66 ACCAGCCGGAGGGTCGACCAAAAAGGTAGAATGCACAAGCCAAGAATCTGCCCGATC-GCCCCTT
* * * * * * *
28662918 CGTGCTATCAATCCTATTGCAGGTTCGGCTATCGCAACCCTCGGTTCGGTCTGATCTTAGACTGG
130 CATGCTACCAATCCTACTGCAGGTTCGACTATCGCAACCCTCGATCCGGTCTGATCTTAGAATGG
*
28662983 GAATGAACTCGTAT
195 GAATGAACTCATAT
* * * *
28662997 GCTTAGACT-GGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACTATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* *
28663061 ACCAGCCGGAGAGGTCGACCAAAAAGGTAGACTGCGCAAGCCAAGAATCAT-CCCGATC-CCTCC
66 ACCAGCCGGAG-GGTCGACCAAAAAGGTAGAATGCACAAGCCAAGAATC-TGCCCGATCGCC-CC
* * * * *
28663124 TTCATGCTACCGATCCTGCTGCTGGTTCTACTGTCGCAACCCTCGATCCGGTCTGATCTTAGAAT
128 TTCATGCTACCAATCCTACTGCAGGTTCGACTATCGCAACCCTCGATCCGGTCTGATCTTAGAAT
28663189 GGGAATGAACTCCATAT
193 GGGAATGAACT-CATAT
* *
28663206 GCTTAGA-TATGGAATGAACTCTGTATGCCTACGCCAACCCATGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACTATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
28663270 AC
66 AC
28663272 TGATCGGAGA
Statistics
Matches: 228, Mismatches: 41, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
207 2 0.01
208 127 0.56
209 98 0.43
210 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (208 bp):
GCTTAGACTATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
ACCAGCCGGAGGGTCGACCAAAAAGGTAGAATGCACAAGCCAAGAATCTGCCCGATCGCCCCTTC
ATGCTACCAATCCTACTGCAGGTTCGACTATCGCAACCCTCGATCCGGTCTGATCTTAGAATGGG
AATGAACTCATAT
Found at i:28664739 original size:26 final size:26
Alignment explanation
Indices: 28664700--28664752 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28664690 GGCTCAAACT
28664700 CTTAGACTGCGAATAAACTCCGTATG
1 CTTAGACTGCGAATAAACTCCGTATG
* *
28664726 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGCGAATAAACTCCGTATG
28664752 C
1 C
28664753 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATAAACTCCGTATG
Found at i:28664926 original size:26 final size:26
Alignment explanation
Indices: 28664887--28664937 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
28664877 AGTCCAATCG
*
28664887 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
28664913 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
28664938 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:28671334 original size:26 final size:26
Alignment explanation
Indices: 28671293--28671345 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28671283 CTGATTCGAT
*
28671293 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
28671319 CTTAGACTAGGG-ATGAACTCCGCATG
1 CTTAGACT-GGGAATGAACTCCGCATG
28671345 C
1 C
28671346 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:28671807 original size:159 final size:159
Alignment explanation
Indices: 28671318--28671870 Score: 510
Period size: 159 Copynumber: 3.4 Consensus size: 159
28671308 AACTCCGTAT
* * * * * * * *
28671318 GCTTAGAC-TAGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * *
28671382 GCCGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCC-CTTTTGCATGCCTGTTC
65 GCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCTC-TCTGCATG-CT-ATC
* *
28671446 GGTCCCGCTGCCACAACCCTCGGTTCCT-ACTGGG
127 GATCCTGCTGCCACAACCCTCGG-T-CTGACTGGG
* * *
28671480 ACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATCGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT-GCGGGCACTCA
* * * * *
28671545 ACCGGCC-AGAGAGGCAAGAATGCACAAGCCTGGGGATCGGCCCGATCCCTC-CTGCATGCTGTC
65 GCCGGCCGA-AGAGGC-ATAATGCGCAAGCC-GGGGATCGGTCCGATCCCTCTCTGCATGCTATC
* ** ** * * *
28671608 AATCCTGCTATCGGAGCCCTCGGTCCGATCT-GA
127 GATCCTGCTGCCACAACCCTCGGTCTGA-CTGGG
* ** * * * *
28671641 TCTTAGAC-TGGGAATGAACTCTATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * *
28671705 GCCGACCGAAGAGGCATAATGTGCAAGTCC-GGGATCGGTTCGGTCCCTCTCTGCATGCTATCGA
65 GCCGGCCGAAGAGGCATAATGCGCAAG-CCGGGGATCGGTCCGATCCCTCTCTGCATGCTATCGA
* *
28671769 TCCTGCTGCCACAACCCTCAGTCTGGCTGGG
129 TCCTGCTGCCACAACCCTCGGTCTGACTGGG
* * * *
28671800 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
28671865 CCGGCC
66 CCGGCC
28671871 AGAGTGGCAG
Statistics
Matches: 311, Mismatches: 66, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
158 18 0.06
159 98 0.32
160 25 0.08
161 48 0.15
162 63 0.20
163 23 0.07
164 18 0.06
165 17 0.05
166 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCTCTCTGCATGCTATCGATC
CTGCTGCCACAACCCTCGGTCTGACTGGG
Found at i:28672074 original size:160 final size:161
Alignment explanation
Indices: 28671781--28672080 Score: 356
Period size: 160 Copynumber: 1.9 Consensus size: 161
28671771 CTGCTGCCAC
*
28671781 AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAA
1 AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAAGAAA
* * * * * * * ***
28671846 CGGGCATGCGAGCACTCAGCCGGCCAGAGTGGCAGAATGCCACAAGCCTAGGGATTGGCTTGGTC
66 CAGGCATGAGAGCACTCAACCGGCCAGAGAGGCAGAATGACACAAGCCGAGGGATCGGCCCAGTC
28671911 CCCCTGCGTGTTGTCAATCCCACTGGCCGAT
131 CCCCTGCGTGTTGTCAATCCCACTGGCCGAT
* *
28671942 AACCCTCAGTCTGGTTGGGGCTTAGACATGGAATGAAC-CCCTATACCTAAGCC-ACCCATGAAA
1 AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAAGAAA
* ** * ** **
28672005 TAGGTGTGTAGGGCACTCAATTGGCCAGAGAGGCAGAAT-ACGTAAGCCCGA-GGATCGGCCCCA
66 CAGGCATG-AGAGCACTCAACCGGCCAGAGAGGCAGAATGACACAAG-CCGAGGGATCGG-CCCA
28672068 GTCCCCCTGCGTG
128 GTCCCCCTGCGTG
28672081 CTGCTGATCC
Statistics
Matches: 115, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
159 23 0.20
160 55 0.48
161 37 0.32
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (161 bp):
AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAAGAAA
CAGGCATGAGAGCACTCAACCGGCCAGAGAGGCAGAATGACACAAGCCGAGGGATCGGCCCAGTC
CCCCTGCGTGTTGTCAATCCCACTGGCCGAT
Found at i:28673475 original size:26 final size:26
Alignment explanation
Indices: 28673446--28673498 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28673436 CCGGTCTAAT
28673446 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
28673472 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28673498 C
1 C
28673499 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28673662 original size:197 final size:196
Alignment explanation
Indices: 28673344--28673708 Score: 493
Period size: 197 Copynumber: 1.9 Consensus size: 196
28673334 CAATACCGGT
* * * * *
28673344 CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTACGTGCTACAGATCTTGCT
1 CCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCGACGTGCTACAGATCCTGCT
* ** * * *
28673409 GTTGGTCCTGCTGTCACAACCTTCGATCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCT
66 GCTGGTCCCACTGTCACAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCT
* *
28673474 TAGAC-TGGGGATGAAC-TCTGTATGCCTAAGTCAACCCATGAAACAAACGTGTGAGCGCTCAGT
131 TAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACAAACGTGTGAGCGCTCAGT
28673537 CAG
194 CAG
* *
28673540 CCGGAAAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCTCCGACGTGCTACCGATCCTGC
1 CCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CCGACGTGCTACAGATCCTGC
* * * *
28673605 TGCTGGTCCCACTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACT-GAGAATGAACTCCATATG
65 TGCTGGTCCCACTGTCACAACCCTCGATCCGGTCCAATCTTAGACTAG-GAATGAACTCCATATG
*
28673669 CTTAGACATGGAATGAACTTCGTGTGCCTAAGCCAACCCA
129 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCA
28673709 CAAAACGAGC
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
196 40 0.28
197 102 0.70
198 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (196 bp):
CCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCGACGTGCTACAGATCCTGCT
GCTGGTCCCACTGTCACAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCT
TAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAACGTGTGAGCGCTCAGTCA
G
Found at i:28673799 original size:197 final size:195
Alignment explanation
Indices: 28673344--28673800 Score: 492
Period size: 197 Copynumber: 2.3 Consensus size: 195
28673334 CAATACCGGT
* * *
28673344 CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTACGTGCTACAGATCTTGCT
1 CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTAC-GATCCTGCT
* ** * * *
28673409 GTTGGTCCTGCTGTCACAACCTTCGATCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCT
65 GCTGGTCCCACTGTCACAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCT
* * ** ** * *
28673474 TAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAACGTGTGAGCGCTCAGTCA
130 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAACGTACGAGCACTCAGCCA
28673539 G
195 G
* * *
28673540 CCGGAAAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCTCC-GACGTGCTACCGATCCTG
1 CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCC-CCTG-CGTGCTA-CGATCCTG
* * * *
28673604 CTGCTGGTCCCACTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACT-GAGAATGAACTCCATAT
63 CTGCTGGTCCCACTGTCACAACCCTCGATCCGGTCCAATCTTAGACTAG-GAATGAACTCCATAT
* * * *
28673668 GCTTAGACAT-GGAATGAACT-TCGTGTGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTT
127 GCTTAGAC-TGGGAATGAACTCT-GTATGCCTAAGCCAACCCACAAAACAAACGTACGAGCAC-T
28673731 CAGCC-G
189 CAGCCAG
* * * * *
28673737 ACCGGAGGGGCAGAATGCGCAAGTCAGGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
1 -CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCT-ACGATCCTG
28673801 TTTTCGTAAC
Statistics
Matches: 215, Mismatches: 36, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
196 41 0.19
197 130 0.60
198 44 0.20
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (195 bp):
CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACGATCCTGCTG
CTGGTCCCACTGTCACAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTT
AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAACGTACGAGCACTCAGCCAG
Found at i:28673971 original size:159 final size:159
Alignment explanation
Indices: 28673668--28674033 Score: 364
Period size: 159 Copynumber: 2.3 Consensus size: 159
28673658 AACTCCATAT
* * ** *
28673668 GCTTAGACATGGAATGAACTTCGTGTGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTTCA
* * * * *
28673733 GCCGACCGGAGGGGCAGAATGCGCAAGTCAGGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATC
66 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCTGTCAATC
* * ** ** *
28673798 CTGTTTTCGTAACCCTCAG-TCCGATTCGA
131 CCGCTGCCACAACCC-CAGATCCGACTCGA
* * *
28673827 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCAC-TG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTTC
* * * * *
28673890 AGTCGACCGAAGAGGCATAATGCGTAAGCC-GAGGATCGACCCGATCCTCCTCTGCGTGCTG-CT
65 AGCCGACCGAAGAGGCAGAATGCGCAAGCCAG-GGACCGACCCGATCC-CCCCTGCGTGCTGTC-
* * * * *
28673953 AATCCCGCTGCCACAACCCCTGATCTGGCTGGG
127 AATCCCGCTGCCACAACCCCAGATCCGACTCGA
* *
28673986 GCTTAGACATGGAATGAACTCCTTATGCCTAGGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
28674034 GGTGTGCGGT
Statistics
Matches: 168, Mismatches: 33, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 42 0.25
159 124 0.74
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTTCA
GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCTGTCAATC
CCGCTGCCACAACCCCAGATCCGACTCGA
Found at i:28674159 original size:26 final size:26
Alignment explanation
Indices: 28674130--28674182 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28674120 CCAGTCCGAT
28674130 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28674156 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28674182 C
1 C
28674183 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28674855 original size:26 final size:26
Alignment explanation
Indices: 28674803--28674855 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28674793 AGCTCAAAAT
* **
28674803 CTTAGACTTGGAATGAACTCTGCATG
1 CTTAGACATGGAATGAACTCCACATG
*
28674829 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCACATG
28674855 C
1 C
28674856 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCACATG
Found at i:28675382 original size:159 final size:159
Alignment explanation
Indices: 28674828--28675389 Score: 469
Period size: 158 Copynumber: 3.5 Consensus size: 159
28674818 AACTCTGCAT
* * * * * * *
28674828 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
28674893 TCTGTC-GGAGAGGCAGAATGCACAAGCTGGGGATCGGCCTGATCCACC-CTGTATGCTGTCGAT
66 -CTGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCACCTCTGTATGCTGTCGAT
* *
28674956 CCTACTGCCACAACCCTT-GGTCCGGTTCAA
130 CCTGCTGCCACAA-CCTTCGGTCCGGTACAA
* * * ** *
28674986 TCTTAGACATAGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGATGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
28675051 CTG-GTCGAAGAGCCATAATACGCAAGCCGGGGATTGA-CTCGGTCCACCTCTGTGTGTTGTCAA
66 CTGACT-GAAGAGGCAGAATGCGCAAGCCGGGGATCGACCT-GGTCCACCTCTGTATGCTGTCGA
* *
28675114 TCCTGCTGTCGCA-AACC-TCGGTCCGGTCCAC
129 TCCTGCTG-C-CACAACCTTCGGTCCGGTACAA
* * * * ** * * * *
28675145 TCTTACAC-TGGGATGAACTTCGTATGCATAAGTCAACCCAAAAAATGAGTGTGCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
28675209 CCGACCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCTGGTCCCCCTCTGCATGCAG-CTGAT
66 CTGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCACCTCTGTATGCTGTC-GAT
* * ***
28675273 CCCGCTGCCACAACCTTCAGTCCGGTAGGG
130 CCTGCTGCCACAACCTTCGGTCCGGTACAA
* *
28675303 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCA
*
28675367 GCTGACTGGAGAGGCAGAATGCG
65 GCTGACTGAAGAGGCAGAATGCG
28675390 AAGGCTGGTG
Statistics
Matches: 313, Mismatches: 77, Indels: 27
0.75 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 11 0.04
158 194 0.62
159 101 0.32
160 3 0.01
161 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCACCTCTGTATGCTGTCGATC
CTGCTGCCACAACCTTCGGTCCGGTACAA
Found at i:28675587 original size:26 final size:26
Alignment explanation
Indices: 28675558--28675616 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
28675548 CCGGTCTGAT
28675558 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28675584 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28675610 CCTAGAC
1 CTTAGAC
28675617 CAACCCACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28675713 original size:184 final size:184
Alignment explanation
Indices: 28675398--28675964 Score: 525
Period size: 196 Copynumber: 3.0 Consensus size: 184
28675388 CGAAGGCTGG
* * ** * * * * * *
28675398 TGCTTAGACATGGAATCAACTCTGTATGCCTAAGCCAATTCATGAAACGAGTGTGCAGCCACTCA
1 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCACTCA
** * * ** * * * *
28675463 GTCGGTC-AAAGAGGCAGAATGCGCAAATCACGGATTG-GCTCGGTCCCCCCTGCATGTTATCGA
66 ACCGATCGAAA-AGGCAGAATGCACAAGCCAGGGATCGAGCTC-GACCCCCCTGCATGCTATCGA
* *
28675526 TCCTACTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
129 TCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * *
28675582 TGCTTAGAC-TGGGGATGAACTCTGTATGCCT-AGACCAACCCAC-AAAACGAGCGTGCGGGCAC
1 TGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCAACCCACGAAAA-GAGCGTACGGGCAC
* * * *
28675644 TTAACCGATCGAAAAGGGTAGAATGCACAAGCCAGGGATC-AGCTCGACCCCCCTACATGCTACC
63 TCAACCGATCGAAAA-GGCAGAATGCACAAGCCAGGGATCGAGCTCGACCCCCCTGCATGCTATC
* *
28675708 GATCCTGCTACTGGTACTACTGTCACAACCCTCGGTCTGGTATGATCTTAGACTGCGAATGAACT
127 GAT-C--CTACT-G-----C---CACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
*
28675773 CCATA
180 CCGTA
* *
28675778 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGGCGCTCA
1 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCACTCA
* ** ** * * *
28675843 ACCGATCGGAAAGGCAGAATGCGTAAGCCAGGGATCGATTTGGTCCCCCCTGCATGCTGTCGATC
66 ACCGATCGAAAAGGCAGAATGCACAAGCCAGGGATCGAGCTCGACCCCCCTGCATGCTATCGATC
* * *
28675908 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
131 CTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
28675962 TGC
1 TGC
28675965 CTAAGTCAAC
Statistics
Matches: 310, Mismatches: 51, Indels: 44
0.77 0.13 0.11
Matches are distributed among these distances:
183 6 0.02
184 115 0.37
185 26 0.08
187 6 0.02
188 1 0.00
193 5 0.02
195 22 0.07
196 122 0.39
197 7 0.02
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (184 bp):
TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCACTCA
ACCGATCGAAAAGGCAGAATGCACAAGCCAGGGATCGAGCTCGACCCCCCTGCATGCTATCGATC
CTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
Found at i:28675786 original size:26 final size:26
Alignment explanation
Indices: 28675754--28675806 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28675744 CTGGTATGAT
28675754 CTTAGAC-TGCGAATGAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
*
28675780 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
28675806 C
1 C
28675807 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:28676127 original size:159 final size:158
Alignment explanation
Indices: 28675779--28676280 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 158
28675769 AACTCCATAT
* *
28675779 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAG
** * * * ** * *
28675844 CCGATCGGAAAGGCAGAATGCGTAAGCCAGGGATCGATTTGGTCCCCCCTGCATGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCAGGCTGCCGATCC
* *
28675909 TGCTACCGCAACCCTCGGTCTGGTCTGA
131 TGCTACCACAACCCTCAGTCTGGTCTGA
* * * * * *
28675937 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCA
* * ** *
28676001 GCCGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACCTGGTCCTCTTCTGTAGGCTGCC-AG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCC-CCCCTGCAGGCTGCCGA-
*
28676065 TCCTGC-AGCCACAACCCTCAGTCTGG-CTGGG
128 TCCTGCTA-CCACAACCCTCAGTCTGGTCT-GA
* * * * *
28676096 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAG
* * * * * *
28676161 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGAT-TAGCCCGATCCCCCCCTAC-GTGCTGCCAA
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCTGGT-CCCCCCTGCAG-GCTGCCGA
* * * ** *
28676224 TCCTACTGCTACAACCCTTGGTCTGGTCCGA
128 TCCTGCTACCACAACCCTCAGTCTGGTCTGA
*
28676255 TCTTAGAC-TGGGAATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
28676281 CCTTAGACTG
Statistics
Matches: 278, Mismatches: 53, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 98 0.35
159 174 0.63
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCAGGCTGCCGATCC
TGCTACCACAACCCTCAGTCTGGTCTGA
Found at i:28676285 original size:26 final size:26
Alignment explanation
Indices: 28676256--28676306 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
28676246 CTGGTCCGAT
28676256 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
28676282 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
28676307 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:28677361 original size:26 final size:26
Alignment explanation
Indices: 28677325--28677377 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28677315 CTGGTCCGAT
*
28677325 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28677351 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28677377 C
1 C
28677378 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28678064 original size:26 final size:26
Alignment explanation
Indices: 28678035--28678087 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28678025 CCAATCCGAT
28678035 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28678061 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28678087 C
1 C
28678088 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28678432 original size:26 final size:26
Alignment explanation
Indices: 28678403--28678455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28678393 CCGGTTCGAT
28678403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28678429 CTTAGTCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28678455 C
1 C
28678456 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28678940 original size:26 final size:26
Alignment explanation
Indices: 28678904--28678982 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
28678894 CCGGTCCAAT
* *
28678904 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGTATGAACTCCGTATG
28678930 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGTATGAACTCCGTATG
*
28678956 CTTAGACTGGGTATGGACTCCGTATG
1 CTTAGACTGGGTATGAACTCCGTATG
28678982 C
1 C
28678983 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGTATGAACTCCGTATG
Done.