Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 304 of 402
Found at i:28679695 original size:26 final size:26
Alignment explanation
Indices: 28679643--28679695 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
28679633 GGCTCAAACT
*
28679643 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGAATG
28679669 CTTAGACAT-GGAATGAACT-TCGAATG
1 CTTAGAC-TGGGAATGAACTCT-GAATG
28679695 C
1 C
28679696 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGAATG
Found at i:28679911 original size:158 final size:158
Alignment explanation
Indices: 28679668--28679968 Score: 374
Period size: 158 Copynumber: 1.9 Consensus size: 158
28679658 AACTCTGTAT
* * * * *
28679668 GCTTAGACATGGAATGAACTTCGAATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCAATGCCCAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
* * * ** *
28679733 TCAGCTGGAGAGGCAGAATGCGCAAGAC-AGGATCAGCCCGATCCCCCTCTGTGTGCTGCCGGTC
66 TCAGCCGGAGAGGCAAAATGCACAAGACGAGGATCAGCCCGATCCCCC-CTACGTGCTGCCGATC
28679797 AC-ACTGCCACAACCCTCAGTCTGGTTGGG
130 -CTACTGCCACAACCCTCAGTCTGGTTGGG
* * * *
28679826 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGGGCGTGCGGACGCTGAG
1 GCTTAGACATGGAATGAACTCCCAATGCCCAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
* * * * *
28679891 -CTGGCCGGAGGGGCAAAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGCCTATC
66 TC-AGCCGGAGAGGCAAAATGCACAAGACGAGGATCAGCCCGATCCCCCCTACGTGCTGCCGATC
28679955 CTACTGCCACAACC
130 CTACTGCCACAACC
28679969 TTTGGTCTAG
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.02
158 100 0.83
159 18 0.15
ACGTcount: A:0.25, C:0.32, G:0.27, T:0.16
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCAATGCCCAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
TCAGCCGGAGAGGCAAAATGCACAAGACGAGGATCAGCCCGATCCCCCCTACGTGCTGCCGATCC
TACTGCCACAACCCTCAGTCTGGTTGGG
Found at i:28679989 original size:158 final size:158
Alignment explanation
Indices: 28679668--28680005 Score: 362
Period size: 158 Copynumber: 2.1 Consensus size: 158
28679658 AACTCTGTAT
* * * * *
28679668 GCTTAGACATGGAATGAACTTCGAATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCAATGCCCAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
* * * ** *
28679733 TCAGCTGGAGAGGCAGAATGCGCAAGACAGGATCAGCCCGATCCCCCTCTGTGTGCTGCCGGTCA
66 TCAGCCGGAGAGGCAAAATGCACAAGACAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCA
* *
28679798 CACTGCCACAACCCTCAGTCTGGTTGGG
131 CACTGCCACAACCCTCAGTCTAGTTGGA
* * * *
28679826 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGGGCGTGCGGACGCTGAG
1 GCTTAGACATGGAATGAACTCCCAATGCCCAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
* * * * *
28679891 -CTGGCCGGAGGGGCAAAATGCACAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTGCCTAT
66 TC-AGCCGGAGAGGCAAAATGCACAAGAC-AGGATCAGCCCGATCCCCCTCTACGTGCTGCCGAT
* **
28679954 C-CTACTGCCACAACCTTTGGTCTAGTCT-GA
129 CAC-ACTGCCACAACCCTCAGTCTAGT-TGGA
*
28679984 TCTTAGAC-TGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
28680006 GTACGCTTAG
Statistics
Matches: 149, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 127 0.85
159 19 0.13
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCAATGCCCAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
TCAGCCGGAGAGGCAAAATGCACAAGACAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCA
CACTGCCACAACCCTCAGTCTAGTTGGA
Found at i:28680021 original size:26 final size:26
Alignment explanation
Indices: 28679985--28680034 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
28679975 CTAGTCTGAT
28679985 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
**
28680011 CTTAGACTGGGGGTGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
28680035 TGCCTATGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:28680460 original size:159 final size:156
Alignment explanation
Indices: 28680149--28680755 Score: 494
Period size: 159 Copynumber: 3.8 Consensus size: 156
28680139 CTACTGCTGG
* * * * *
28680149 TCCTGCTACCGCAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
1 TCCTACTACCACAACCCTCAG-CCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
28680213 CCAACCCACAAAATGAGCATACGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCTGAGGA
65 CCAACCCACAAACT-AGCGTTCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGA
* ***
28680278 CCGGTTTGGTCCCCCCCTT-CGTGCTGTCGA
129 TCGGCCCGGT---CCCCTTACGTGCTGTCGA
* * **
28680308 TCCTACTGCCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAATT
1 TCCTACTACCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
28680373 CAACCCACGAAACTAGCGTTCGGGCGTTGAGCCAATTGGAGAGGCATAATGCGCAAGCCGAGGAT
66 CAACCCAC-AAACTAGCGTTCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGAT
* *
28680438 CGGCCCGGTCACCCTTTACGTGCT-ACCA
130 CGGCCCGGTC-CCC-TTACGTGCTGTCGA
** * *
28680466 GTCCCGCTACCACAACCCTCAGTCC-GA-CTG-TGGCTTAGACAT-GGAATGAACTCCCTATGCC
1 -TCCTACTACCACAACCCTCAG-CCTGATCCGAT--CTTAGAC-TGGGAATGAACTCCGTATGCC
* ** * * *
28680527 TAAGCCAACCTACAAAACGGGCGTGT-GGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTC
61 TAAGCCAACCCAC-AAACTAGCGT-TCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCC
***
28680591 GAGGATAATCCCGGTCCCCTTACGTGCTGTCGA
124 GAGGATCGGCCCGGTCCCCTTACGTGCTGTCGA
* * ** * * * *
28680624 TCCTACTATCACAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTACTACCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * ** * * * *
28680689 CAACCCACAAAATGAGTGTGCGGATGCTCAGCCA-ACTAGAGAGGCAGGATGCGCAAGCCAAGGA
66 CAACCCACAAACT-AGCGTTCGGGCGCTCAGCCAGTC-GGAGAGGCAGAATGCGCAAGCCGAGGA
28680753 TCG
129 TCG
28680756 AACGGATGGT
Statistics
Matches: 349, Mismatches: 80, Indels: 40
0.74 0.17 0.09
Matches are distributed among these distances:
156 6 0.02
157 102 0.29
158 12 0.03
159 220 0.63
160 9 0.03
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (156 bp):
TCCTACTACCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACAAACTAGCGTTCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATC
GGCCCGGTCCCCTTACGTGCTGTCGA
Found at i:28680743 original size:316 final size:316
Alignment explanation
Indices: 28680181--28680755 Score: 712
Period size: 316 Copynumber: 1.8 Consensus size: 316
28680171 CTGGTCCGAT
* *
28680181 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGC
** **
28680246 CAGCCGGAGAGGCAGAATGCGCAAGCTGAGGACCGGTTTGGTCCCCCCCTTCGTGCTGTCGATCC
66 CAGCCGGAGAGGCAGAATGCGCAAGCTGAGGACCAATCCGGT--CCCCCTTCGTGCTGTCGATCC
* * *
28680311 TACTGCCACAACCCTCAGCCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAATTCAA
129 TACTACCACAACCCTCAGCCTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* * * * * * * * *
28680376 CCCACGAAACTAGCGTTCGGGCGTTGAGCCAATTGGAGAGGCATAATGCGCAAGCCGAGGATCGG
194 CCCACGAAAATAGCGTGCGGACGCTCAGCCAACTAGAGAGGCAGAATGCGCAAGCCAAGGATCGG
28680441 CCCGGTCACCCTTTACGTGCTACCAGTCCCGCTACCACAACCCTCAGTCCGACTGTGG
259 CCCGGTCACCCTTTACGTGCTACCAGTCCCGCTACCACAACCCTCAGTCCGACTGTGG
* * * * **
28680499 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCTACAAAACGGGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAG
* * * *
28680563 CCGGTCGGAGAGGCAGAATGCGTAAG-TCGAGGA-TAATCCCGGT-CCCCTTACGTGCTGTCGAT
65 CCAGCCGGAGAGGCAGAATGCGCAAGCT-GAGGACCAAT-CCGGTCCCCCTT-CGTGCTGTCGAT
* * ** *
28680625 CCTACTATCACAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGT
127 CCTACTACCACAACCCTCAGCCTGATCCAATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGT
* * *
28680689 CAACCCAC-AAAATGAGTGTGCGGATGCTCAGCCAACTAGAGAGGCAGGATGCGCAAGCCAAGGA
191 CAACCCACGAAAAT-AGCGTGCGGACGCTCAGCCAACTAGAGAGGCAGAATGCGCAAGCCAAGGA
28680753 TCG
255 TCG
28680756 AACGGATGGT
Statistics
Matches: 215, Mismatches: 36, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
315 12 0.06
316 115 0.53
317 2 0.01
318 85 0.40
319 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (316 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGCTGAGGACCAATCCGGTCCCCCTTCGTGCTGTCGATCCTA
CTACCACAACCCTCAGCCTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
CACGAAAATAGCGTGCGGACGCTCAGCCAACTAGAGAGGCAGAATGCGCAAGCCAAGGATCGGCC
CGGTCACCCTTTACGTGCTACCAGTCCCGCTACCACAACCCTCAGTCCGACTGTGG
Found at i:28681809 original size:25 final size:25
Alignment explanation
Indices: 28681781--28681831 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
28681771 CCGATCTCAG
28681781 ACTGGGAATGAACTCCGTATGCTTA
1 ACTGGGAATGAACTCCGTATGCTTA
*
28681806 ACTGGGGATGAACTCCGTATGCTTA
1 ACTGGGAATGAACTCCGTATGCTTA
28681831 A
1 A
28681832 GTCAACCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
ACTGGGAATGAACTCCGTATGCTTA
Found at i:28682009 original size:26 final size:26
Alignment explanation
Indices: 28681971--28682026 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
28681961 CCGATCCGAT
* *
28681971 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATA
28681997 CTTAGACAT-GGAATGAACTCCGTATA
1 CTTAGAC-TGGGAATGAACTCCGTATA
28682023 CTTA
1 CTTA
28682027 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:28682485 original size:157 final size:158
Alignment explanation
Indices: 28682106--28682498 Score: 397
Period size: 159 Copynumber: 2.5 Consensus size: 158
28682096 GATTCGATCT
** * *
28682106 CCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
1 CCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * * ** *
28682171 AACTCCGTATGCCAAAGTCAACCTACGAAACGAGTGTTCGGGCATTGAGCCAGCCGGAGAGGCAT
66 AACTCCGTATGCCAAAGCCAACCCACGAAACGAGTGTTCGGGCA-TCAACCAGCCAAAGAGGCAG
28682236 AATACGCAAGTCGGGGATCGACCCAGTCC
130 AATACGCAAGTCGGGGATCGACCCAGTCC
* * * * * ** *
28682265 ACCTCTGCGTGCTGCC-AGT-CTCGCTACCACAACCCTCAGTCCAG-CTGGGGCTTAGA-TATGG
1 CCCCCTGCGTGCTGCCGA-TCCT-GCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGACT-GGG
* * * *
28682326 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTG-TGGGTGC-TCAACCA-CCAAAG
62 AATGAACTCCGTATGCCAAAGCCAACCCACGAAAC-GA-GTGTTCGG-GCATCAACCAGCCAAAG
* * *
28682388 AGGTAGAATACGCAAGTCGGGGATTGGCCCAG-CC
124 AGGCAGAATACGCAAGTCGGGGATCGACCCAGTCC
** *
28682422 CCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATA
1 CCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
28682487 AACTCCGTATGC
66 AACTCCGTATGC
28682499 TTAGACTGGG
Statistics
Matches: 185, Mismatches: 38, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
157 57 0.31
158 43 0.23
159 75 0.41
160 5 0.03
161 5 0.03
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (158 bp):
CCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCCAAAGCCAACCCACGAAACGAGTGTTCGGGCATCAACCAGCCAAAGAGGCAGA
ATACGCAAGTCGGGGATCGACCCAGTCC
Found at i:28682501 original size:26 final size:26
Alignment explanation
Indices: 28682472--28682524 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28682462 CCGGTCTGAT
28682472 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
28682498 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
28682524 C
1 C
28682525 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:28682887 original size:26 final size:26
Alignment explanation
Indices: 28682849--28682901 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28682839 CCGGTCTTAT
28682849 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28682875 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
28682901 C
1 C
28682902 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28683283 original size:159 final size:156
Alignment explanation
Indices: 28682874--28683335 Score: 446
Period size: 159 Copynumber: 2.9 Consensus size: 156
28682864 AACTCTGTAT
**
28682874 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGTAGGCGCTGAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTGAG
* * * * * *
28682939 CTGGCTGGAGAGGCAGAATGC-ACAAG-TCGGGGATCAACCAGGTCCCCCCTACGTGCAGTCGAT
66 CCGGCCGGAGAGGCAGAATGCGA-AAGCT-GGGGATCGACC-GAT-CCCCCTGCGTGCTGTCGAT
* * * *
28683002 CCTGCTGCTACAACCCTCAGTTTGATCCGA
127 CCTACTGCCACAACCCTCAATTCGATCCGA
* * * * *
28683032 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACGCC-CGGAACGAACGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAAC-CCATGAAACGAACGTGCGGGCGCTG
** * * * * * *
28683095 AGCCGATCGGAGAGGCATAATGTGCAAGCTGGGGATCGGCTCGATCCCCTTCTGCGTGCTGCCGG
64 AGCCGGCCGGAGAGGCAGAATGCGAAAGCTGGGGATCGAC-CGATCCCC--CTGCGTGCTGTCGA
** *
28683160 TCCTACTGCCACAACCCTCAATTCGATTGGG
126 TCCTACTGCCACAACCCTCAATTCGATCCGA
* ** * *
28683191 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTGAG
* * * * *
28683256 CCGGCCAGAGAGGTAGAATGCGAAAGCTAGGAATCGACCCGATCCCCCTGCATGCTGTCGATCCT
66 CCGGCCGGAGAGGCAGAATGCGAAAGCTGGGGATCGA-CCGATCCCCCTGCGTGCTGTCGATCCT
* *
28683321 ACTGTCGCAACCCTC
130 ACTGCCACAACCCTC
28683336 GGTCTGGTCT
Statistics
Matches: 241, Mismatches: 53, Indels: 21
0.77 0.17 0.07
Matches are distributed among these distances:
157 33 0.14
158 83 0.34
159 123 0.51
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTGAG
CCGGCCGGAGAGGCAGAATGCGAAAGCTGGGGATCGACCGATCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCAATTCGATCCGA
Found at i:28683963 original size:16 final size:17
Alignment explanation
Indices: 28683942--28683980 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
28683932 CCCCCCGGCC
28683942 CCCCCAAT-CGTCGGAA
1 CCCCCAATCCGTCGGAA
28683958 CCCCCAATGCCGTCGGAA
1 CCCCCAAT-CCGTCGGAA
28683976 CCCCC
1 CCCCC
28683981 CGGCCCCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.38
18 13 0.62
ACGTcount: A:0.21, C:0.51, G:0.18, T:0.10
Consensus pattern (17 bp):
CCCCCAATCCGTCGGAA
Found at i:28684474 original size:26 final size:26
Alignment explanation
Indices: 28684438--28684490 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28684428 CTGATTTGAT
* *
28684438 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
28684464 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
28684490 C
1 C
28684491 CAAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:28685208 original size:26 final size:26
Alignment explanation
Indices: 28685170--28685220 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28685160 CTCAAAATCC
*
28685170 TAGACTGGCAATGAACTTCGTATGCT
1 TAGACTGGCAATGAACTCCGTATGCT
28685196 TAGACATGG-AATGAACTCCGTATGC
1 TAGAC-TGGCAATGAACTCCGTATGC
28685221 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCGTATGCT
Found at i:28685725 original size:158 final size:158
Alignment explanation
Indices: 28685194--28685783 Score: 527
Period size: 159 Copynumber: 3.7 Consensus size: 158
28685184 ACTTCGTATG
* * *
28685194 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * *
28685258 CTGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGGTCCCCCCTTGCGTGCTGTCGA
65 CCGACT-GGAGAGGCATAATGCGCAAGCCGGGGATCAG-CCCGGT-CCCCCTTGTGTGCTGTCGA
* * * *
28685321 TCCTACTACTGTAACCCTCGGTCCAATCCAAT
127 TCCTACTACAGTAACCCTCAGTCCGATCTAAT
* * * * ** *
28685353 CTTAGACTGGGAGTGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGATGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * ** * * * *
28685418 CGACCGAAGTGGCATAATGCGCTGGTCGGGGATCAGCCCGGTTCCCCTCTGTGTGCTGCCAATCC
66 CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCT-TGTGTGCTGTCGATCC
** * * ***
28685483 CGCTGCCAG-AACCCT-AGGTCCGGT-TGGGG
130 TACT-ACAGTAACCCTCA-GTCCGATCT-AAT
* * * *
28685512 CTTAGACAT-GGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACG-GACGTGCGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAG-CATGCGGGCGCTCA
* * **
28685575 GCCGACTGGAGAGGCAAAATGTGCAAGCCAAGGATC-GACCCGGTCCCCCTTGTGTGCTGTCGAT
64 GCCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAG-CCCGGTCCCCCTTGTGTGCTGTCGAT
* *
28685639 CCTACTATC-GTAACCCTCAGTTCGATCTTAT
128 CCTACTA-CAGTAACCCTCAGTCCGATCTAAT
* * * * * * * *
28685670 CATAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGTGTTTAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
28685735 CTG-CTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTT
66 C-GACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTT
28685784 TACGTGCTGC
Statistics
Matches: 335, Mismatches: 78, Indels: 37
0.74 0.17 0.08
Matches are distributed among these distances:
157 2 0.01
158 127 0.38
159 202 0.60
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGTGTGCTGTCGATCCT
ACTACAGTAACCCTCAGTCCGATCTAAT
Found at i:28685769 original size:317 final size:318
Alignment explanation
Indices: 28685193--28685802 Score: 807
Period size: 317 Copynumber: 1.9 Consensus size: 318
28685183 AACTTCGTAT
* * *
28685193 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCATGCGAGCACTCAA
* * **
28685258 CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATC
* * *
28685323 CTACTACTGTAACCCTCGGTCCAATCCAATCTTAGACTGGGAGTGAACTCCATATGCATAAGTCA
131 CTACTACTGTAACCCTCAGTCCAATCCAATCATAGACTGGGAATGAACTCCATATGCATAAGTCA
* * * * ** *
28685388 ACCCACGAAACGAGCGTGCGGATGCTGAGCCGACCGAAGTGGCATAATGCGCTGGTCGGGGATCA
196 ACCCACAAAACAAGCATGCGGATGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCA
* **
28685453 GCCCGGTTCCCCTCTGTGTGCTGCCAATCCCGCTGCCAGAACCCTAGGTCCGGTTGGG
261 GCCCGGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCAGAACCCTAGGTCCGGTTGGG
* *
28685511 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACG-GACGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAG-CATGCGAGCACTCA
* * *
28685575 GCCGA-CTGGAGAGGCAAAATGTGCAAGCCAAGGATCGACCCGGT-CCCCCTTGTGTGCTGTCGA
65 ACCGATC-GGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGA
* * ** * *
28685638 TCCTACTA-TCGTAACCCTCAGTTCGATCTTATCATAGACTGGGAATGAACTCCTTATGCCTAAG
129 TCCTACTACT-GTAACCCTCAGTCCAATCCAATCATAGACTGGGAATGAACTCCATATGCATAAG
* * * * *
28685702 TCAACCCACAAAACAAGCATGCGGGTGTTTAGCCTG-CTGGAGAGGCATAATGCGCAAGCCGGGG
193 TCAACCCACAAAACAAGCATGCGGATGCTGAGCC-GACCGAAGAGGCATAATGCGCAAGCCGGGG
* *
28685766 ATCAGCCCGGTCCCCCTTTACGTGCTGCCGATCCCGC
257 ATCAGCCCGGTCCCCCTCTACGTGCTGCCAATCCCGC
28685803 AACCGGTCCT
Statistics
Matches: 250, Mismatches: 38, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
316 1 0.00
317 155 0.62
318 94 0.38
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGAGCATGCGAGCACTCAA
CCGATCGGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATC
CTACTACTGTAACCCTCAGTCCAATCCAATCATAGACTGGGAATGAACTCCATATGCATAAGTCA
ACCCACAAAACAAGCATGCGGATGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCA
GCCCGGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCAGAACCCTAGGTCCGGTTGGG
Found at i:28685877 original size:26 final size:26
Alignment explanation
Indices: 28685841--28685896 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
28685831 CTGATCTGAT
* *
28685841 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTACATATG
*
28685867 CTTAGATTGGGGATGAACTACATATG
1 CTTAGATTGGGAATGAACTACATATG
28685893 CTTA
1 CTTA
28685897 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTACATATG
Found at i:28686250 original size:26 final size:26
Alignment explanation
Indices: 28686221--28686273 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28686211 CCTGTTTGAT
28686221 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
*
28686247 CTTAGACATGGAATGAACTTTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
28686273 C
1 C
28686274 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:28686763 original size:26 final size:26
Alignment explanation
Indices: 28686734--28686786 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28686724 CTAATCCGAT
28686734 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28686760 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28686786 C
1 C
28686787 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28687110 original size:518 final size:512
Alignment explanation
Indices: 28686010--28687135 Score: 1359
Period size: 513 Copynumber: 2.2 Consensus size: 512
28686000 TGTCGATCCC
* *** ** *
28686010 GCTGCCGGTCCAGCTGCCACAACCCTCGGTCCAAGGAGGGCTTAGACATGGACCGAACTCCGTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGCTG-GGGCTTAGACATGGAATGAACTCCCTAT
* * **
28686075 GCCTAAGCCAACCCACGAAATGAGCCA-GCGGACGCTCAGCCAGCCAGATAGGTTGAATGCACAA
65 GCCTAAGCCAACCCACGAAATG-GGCATGCGGACGCTCAGCCAGCCAGAGAGGCAGAATGCACAA
* *
28686139 GCCGGGGATCGGCTTGGTACCCCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGTTACCGCAAC
129 GCCGGGGATCGGCTTGATACCCCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGCTACCGCAAC
* ** * **
28686204 CCTCGATCCTGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTTG
194 CCTCGATCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCG
* *
28686269 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGACCAGAGAGGCAGAATGCGC
259 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAGAGAGGCAGAATGCGC
* * * * * * **
28686334 AAGCTAGGGACGGGCCTGACCCCCCTGCGTGCTGTCGATCTTGCTGCCGTAACACTTGGTCCGAT
324 AAGCGAGAGACCGGCCCGACCCCCCTGCGTGCTGTCGATCCTGCTACCACAACACTTGGTCCGAT
* ** * * * *
28686399 CCGATCTTAGATTGGGAATGAACTCTGTTTGCCTAGGTCAACCCACGAAACGGGCGTGTGGGCAC
389 CCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC
* * * * *
28686464 TGAGCCGCCTGGAGAGGCATAATGTGTAAGCTGGGGATCGACCCGGTCCCCCTCTGCGT
454 TGAGCAGCCTGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCAT
* * * *
28686523 GATGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCG-CTGGGGCTTAGACATGGAATGAACTCCCTAT
** * * **
28686588 GCCTAAGCCAACCCATAAAATGGGCATGCTGG-TGCTCAGCCAGCCGGAGAGGCAGAATGCGTAA
65 GCCTAAGCCAACCCACGAAATGGGCATGC-GGACGCTCAGCCAGCCAGAGAGGCAGAATGCACAA
* * * * *
28686652 GCTGGGGATCGG-TCTGATCCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTACCGCAT
129 GCCGGGGATCGGCT-TGATACCCCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGCTACCGCAA
* *
28686716 CCCTCG-TTCTAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACTC
193 CCCTCGATCCT-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTC
* * * * *
28686780 CGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGTGCGGGCGCTCAACCGATC-GAAGAGGTAG
257 CGTATGCCTAAGCCAACCCACGAAACGA----GCGTGCGGGCACTCAACCGACCAG-AGAGGCAG
* * * *
28686844 AATGCGCAAGCCGA-AGACCGGCCCGATCCCCCCTGCTTGCTGTCGATCCTGTTATCACAACCCT
317 AATGCGCAAG-CGAGAGACCGGCCCGA-CCCCCCTGCGTGCTGTCGATCCTGCTACCACAACACT
** * * ** *
28686908 TGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATTAAATGAGCG
380 TGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCG
28686973 TGCGGGCACTGAGCTAGCC-GGAGAGGCATAATGCGCAAG-TCGGGGATCGACCCGATCCCCCTC
445 TGCGGGCACTGAGC-AGCCTGGAGAGGCATAATGCGCAAGCT-GGGGATCGACCCGATCCCCCTC
28687036 TGCAT
508 TGCAT
* *
28687041 TCTGCCGGTCCCGCTGCCACAACCCTTGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCC-GCTGGGGCTTAGACATGGAATGAACTCCCTAT
*
28687106 GCCTAAGCCAACCCACGAAACGGGCATGCG
65 GCCTAAGCCAACCCACGAAATGGGCATGCG
28687136 ATCGGTCAAT
Statistics
Matches: 516, Mismatches: 82, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
512 7 0.01
513 233 0.45
514 3 0.01
516 1 0.00
517 46 0.09
518 222 0.43
519 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (512 bp):
GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAATGGGCATGCGGACGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGC
CGGGGATCGGCTTGATACCCCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGCTACCGCAACCC
TCGATCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAGAGAGGCAGAATGCGCAA
GCGAGAGACCGGCCCGACCCCCCTGCGTGCTGTCGATCCTGCTACCACAACACTTGGTCCGATCC
GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTG
AGCAGCCTGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCAT
Found at i:28687159 original size:518 final size:513
Alignment explanation
Indices: 28686010--28687175 Score: 1357
Period size: 518 Copynumber: 2.3 Consensus size: 513
28686000 TGTCGATCCC
* *** ** *
28686010 GCTGCCGGTCCAGCTGCCACAACCCTCGGTCCAAGGAGGGCTTAGACATGGACCGAACTCCGTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGCTG-GGGCTTAGACATGGAATGAACTCCCTAT
* * ** **
28686075 GCCTAAGCCAACCCACGAAATGAGCCA-GCGGA-CGCTCAGCCAGCC-AGATAGGTTGAATGCAC
65 GCCTAAGCCAACCCACGAAATG-GGCATGCGGATCGCTCAGCCAGCCGA-AGAGGCAGAATGCGT
* *
28686137 AAGCCGGGGATCGGCTTGGTACCCCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGTTACCGCA
128 AAGCCGGGGATCGGCTTGATACCCCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGCTACCGCA
* ** * *
28686202 ACCCTCGATCCTGTTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTT
193 ACCCTCGATCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTC
* * *
28686267 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGACCAGAGAGGCAGAATGC
258 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAGAGAGGCAGAATGC
* * * * * * **
28686332 GCAAGCTAGGGACGGGCCTGACCCCCCTGCGTGCTGTCGATCTTGCTGCCGTAACACTTGGTCCG
323 GCAAGCGAGAGACCGGCCCGACCCCCCTGCGTGCTGTCGATCCTGCTACCACAACACTTGGTCCG
* ** * * * *
28686397 ATCCGATCTTAGATTGGGAATGAACTCTGTTTGCCTAGGTCAACCCACGAAACGGGCGTGTGGGC
388 ATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
28686462 ACTGAGCCGCCTGGAGAGGCATAATGTGTAAGCTGGGGATCGACCCGGTCCCCCTCTGCGT
453 ACTGAGCAGCCTGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCAT
* * * *
28686523 GATGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCG-CTGGGGCTTAGACATGGAATGAACTCCCTAT
** *
28686588 GCCTAAGCCAACCCATAAAATGGGCATGCTGG-T-GCTCAGCCAGCCGGAGAGGCAGAATGCGTA
65 GCCTAAGCCAACCCACGAAATGGGCATGC-GGATCGCTCAGCCAGCCGAAGAGGCAGAATGCGTA
* * * *
28686651 AGCTGGGGATCGG-TCTGATCCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTACCGCA
129 AGCCGGGGATCGGCT-TGATACCCCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGCTACCGCA
* * *
28686715 TCCCTCG-TTCTAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACT
193 ACCCTCGATCCT-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * * *
28686779 CCGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGTGCGGGCGCTCAACCGATC-GAAGAGGTA
257 CCGTATGCCTAAGCCAACCCACGAAACGA----GCGTGCGGGCACTCAACCGACCAG-AGAGGCA
* * * *
28686843 GAATGCGCAAGCCGA-AGACCGGCCCGATCCCCCCTGCTTGCTGTCGATCCTGTTATCACAACCC
317 GAATGCGCAAG-CGAGAGACCGGCCCGA-CCCCCCTGCGTGCTGTCGATCCTGCTACCACAACAC
** * * ** *
28686907 TTGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATTAAATGAGC
380 TTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGC
28686972 GTGCGGGCACTGAGCTAGCC-GGAGAGGCATAATGCGCAAG-TCGGGGATCGACCCGATCCCCCT
445 GTGCGGGCACTGAGC-AGCCTGGAGAGGCATAATGCGCAAGCT-GGGGATCGACCCGATCCCCCT
28687035 CTGCAT
508 CTGCAT
* *
28687041 TCTGCCGGTCCCGCTGCCACAACCCTTGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCC-GCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * ****
28687106 GCCTAAGCCAACCCACGAAACGGGCATGC-GATCGGTCAATTGGCCGAAGAGGCAGAATGCGTAA
65 GCCTAAGCCAACCCACGAAATGGGCATGCGGATCGCTCAGCCAGCCGAAGAGGCAGAATGCGTAA
*
28687170 ACCGGG
130 GCCGGG
28687176 ATCAACCTGA
Statistics
Matches: 545, Mismatches: 89, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
512 7 0.01
513 232 0.43
514 3 0.01
516 2 0.00
517 46 0.08
518 251 0.46
519 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (513 bp):
GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAATGGGCATGCGGATCGCTCAGCCAGCCGAAGAGGCAGAATGCGTAAG
CCGGGGATCGGCTTGATACCCCCCTGCGTGCTACCAATCCTGCTGCTGGTCCTGCTACCGCAACC
CTCGATCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGT
ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAGAGAGGCAGAATGCGCA
AGCGAGAGACCGGCCCGACCCCCCTGCGTGCTGTCGATCCTGCTACCACAACACTTGGTCCGATC
CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
GAGCAGCCTGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCAT
Found at i:28687274 original size:26 final size:26
Alignment explanation
Indices: 28687238--28687290 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28687228 CCAGTCTGAT
* *
28687238 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28687264 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28687290 C
1 C
28687291 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28687830 original size:26 final size:26
Alignment explanation
Indices: 28687792--28687844 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28687782 GGCTCAAACT
28687792 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28687818 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
28687844 C
1 C
28687845 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28688329 original size:26 final size:26
Alignment explanation
Indices: 28688293--28688344 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
28688283 CCAGTTTGAT
28688293 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28688319 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28688345 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28689701 original size:208 final size:210
Alignment explanation
Indices: 28689290--28689789 Score: 587
Period size: 209 Copynumber: 2.4 Consensus size: 210
28689280 TCCGACTAGG
* * * ** * *
28689290 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* * ** * * *
28689355 CCAGCCTGAGAGGTC-GACCAGAGAGGCAGAATGCACAAGTTGGGGATCTGCCCGGTCTGCCCCT
66 CCAGCCAGAGAGG-CAGACCAAAGAGGCAGAATGCACAAGCCGAGGATCTGCCCGATCTCCCCCT
* * * *
28689419 TCGTGCTGTCAATCCTACTGCAGGTTCTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
130 TCGTGCTGCCAATCCTACTGCAGGTTCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGAATG
28689484 GGAATGAACT-CATAT
195 GGAATGAACTCCATAT
* * * * *
28689499 GCTTAGA-TTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * *
28689563 ACCAGCCGGAGAGGCAGACCAAAGAGGCAGACTGCGCAAGCCGAGGATCAT-CCCGATC-CCCCC
65 ACCAGCCAGAGAGGCAGACCAAAGAGGCAGAATGCACAAGCCGAGGATC-TGCCCGATCTCCCCC
* * * * * *
28689626 TTCGTGCTGCCGATCCTACTGCTGGTTCTACTGTCGTAACCCTTGATCCGGTCTGATCTTCGAAT
129 TTCGTGCTGCCAATCCTACTGCAGGTTCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGAAT
*
28689691 GGGAATGAACTCCGTAT
194 GGGAATGAACTCCATAT
* * * *
28689708 GCTTAGACATGGAATGAACTCCGTATGCCTACGCCAACCCATGAAACGGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
**
28689773 CCAATCAGAGAGGCAGA
66 CCAGCCAGAGAGGCAGA
28689790 ATACGGAAGT
Statistics
Matches: 242, Mismatches: 44, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
208 72 0.30
209 168 0.69
210 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (210 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
CCAGCCAGAGAGGCAGACCAAAGAGGCAGAATGCACAAGCCGAGGATCTGCCCGATCTCCCCCTT
CGTGCTGCCAATCCTACTGCAGGTTCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGAATGG
GAATGAACTCCATAT
Found at i:28690602 original size:26 final size:26
Alignment explanation
Indices: 28690564--28690616 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28690554 CCGATCGGAT
**
28690564 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
28690590 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
28690616 C
1 C
28690617 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:28690869 original size:159 final size:158
Alignment explanation
Indices: 28690590--28691089 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 158
28690580 ACTCCATATG
* * * *
28690590 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
28690655 CAGTCGGAGAGGCAGAATACGTAAGCCGGGGACCGGCCCGATCCCTTTGTGCGTGCTGTCGATCC
66 GA-CCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGATCC
* ** * *
28690720 CACTATCGTAACCCTCGGTCTGGTA-T-GAT
130 CACTACCACAACCCTCGATC-CG-ACTGGAT
* * * *
28690749 CTTAGGC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * *
28690813 CTGACCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTACGTGCTATCGGTC
65 C-GACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGATC
** * *
28690878 CCGTTGCCACAACCCTCGATCCGACTGGGT
129 CCACTACCACAACCCTCGATCCGACTGGAT
* * *
28690908 CTTAGACATGG-A--AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG-
* * * *
28690970 CGGCCAGAGAGGCAGAATGCGTAA-CCTGGGGATCGACCCGATCCCC-CCTGCGTGCTGTCGATC
65 CGACCGGAGAGGCAGAATGCGTAAGCC-GGGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGATC
*** * * * *
28691033 ATGCTATCACAACGCTCAATCCGA-TCCGAT
129 CCACTACCACAACCCTCGATCCGACT-GGAT
*
28691063 CTCAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
28691090 TTAAACTGAG
Statistics
Matches: 276, Mismatches: 53, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
154 2 0.01
155 42 0.15
156 82 0.30
157 2 0.01
158 14 0.05
159 132 0.48
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
GACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGATCCC
ACTACCACAACCCTCGATCCGACTGGAT
Found at i:28691821 original size:26 final size:26
Alignment explanation
Indices: 28691783--28691835 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28691773 GCCTCAAAAT
28691783 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
28691809 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
28691835 C
1 C
28691836 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:28692319 original size:26 final size:26
Alignment explanation
Indices: 28692283--28692335 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28692273 CCGGTCTGAT
* *
28692283 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28692309 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28692335 C
1 C
28692336 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28693118 original size:159 final size:156
Alignment explanation
Indices: 28692690--28693121 Score: 406
Period size: 159 Copynumber: 2.7 Consensus size: 156
28692680 AACTCCGTAT
* *
28692690 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTT-CGGGT-GCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-TTGC-GGTCGCTA
** * * *
28692753 AGCCGGTCGGAGAGGCAAAATGCATAAGCCGGGGATCGGCCTGGTCCCTCCTGCATGCTGTCGAC
64 AGCCGACCGGAGAGGCAAAATGCGTAA-CCGGGGATCGGCC-GGTCCCCCCTGCAGGCTGTCGAC
* *** *
28692818 TCTGCTGCTGTAACCCTCGATCTGGTCCGA
127 TCCGCTGCCACAACCCTCGATCTGCTCCGA
* * * * * * *
28692848 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGTCGCTAA
* * * * * * * *
28692912 GCCGACCGAAGAGGCATAATGCGCTAGCCGAGGATCGACCCGATCCCCCTCTGCGGGCTGTCG-G
65 GCCGACCGGAGAGGCAAAATGCG-TAACCGGGGATCG-GCCGGTCCCCC-CTGCAGGCTGTCGAC
* *
28692976 TGCCGCTGCCACAACCCTCGATCTAGCT-GGG
127 T-CCGCTGCCACAACCCTCGATCT-GCTCCGA
* * *
28693007 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCTTGCGGTCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGTCGCTAAG
* * *
28693072 CCGACCGGAGATGCAGAATGCGTAACCTGGGGATTGGCACGGTCCCCCCT
66 CCGACCGGAGAGGCAAAATGCGTAACC-GGGGATCGGC-CGGTCCCCCCT
28693122 ATGTGCTACC
Statistics
Matches: 216, Mismatches: 47, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 89 0.41
159 120 0.56
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGTCGCTAAG
CCGACCGGAGAGGCAAAATGCGTAACCGGGGATCGGCCGGTCCCCCCTGCAGGCTGTCGACTCCG
CTGCCACAACCCTCGATCTGCTCCGA
Found at i:28693918 original size:26 final size:26
Alignment explanation
Indices: 28693880--28693932 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28693870 GGCTCAAAAT
28693880 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28693906 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28693932 C
1 C
28693933 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28694249 original size:159 final size:158
Alignment explanation
Indices: 28693905--28694724 Score: 562
Period size: 158 Copynumber: 5.2 Consensus size: 158
28693895 AACTCCGTAT
* * *
28693905 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACACACGAAATGAGCGTGCGGGCGCTCAG
* ** * * * *
28693970 CC-AGTCGGAGAGGCAGAATGCATAAGTCGGAGATTGGCCCGGTCCCCCCTACGTGCTGTCGATC
66 CCGA-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * ** * * *
28694034 TTGTTGCTGCAACCCTCAGTCTGATTTGA
130 CTGCTGCCACAACCCTCGGTCCGACTTGA
* * ** * *
28694063 TCTTAGAC-TGGGGATGAACTCCGTATGCATAAATCAATC-CACGAAATGAGCGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAA-CACACGAAATGAGCGTGCGGGCGCTC
* * *
28694126 AGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGG
64 AGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA
* *
28694191 TCCTGCTGCCACAACCCTCGGTCCGACTAGG
128 TCCTGCTGCCACAACCCTCGGTCCGACTTGA
* * * * * * * * *
28694222 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAATGAAATGGGTGTGCAGTCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACACACGAAATGAGCGTGCGGGCGCTCAG
* * * *
28694287 CCG-TCTGGAGAGGCAGAATGCGTAAGCCGAGGA-CTGGCCCGGTCCCCCCTGCGTGCTGTTGAT
66 CCGATC-GAAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGGTCCCCCCTGCGTGCTGTCGAT
* ** ** * * *
28694350 CCTACTATCGTAACCCTCGATCTG-GTCTGA
129 CCTGCTGCCACAACCCTCGGTCCGACT-TGA
* * * * * * *
28694380 TCTTAGAC-TAGGAAGGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACACACGAAATGAGCGTGCGGGCGCTCA
* * * * * * ** * * * *
28694444 GCTGGTCGAAGGGGTATAATGCGCAAGCCGGGGTTCGGTTCGATCCCTCTCTGTGTGCTGTCGGT
65 GCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGTCGAT
* * *
28694509 CCTGCTGCCACAACCTTCGGTCCG-GTTGG
129 CCTGCTGCCACAACCCTCGGTCCGACTTGA
* * * * * * * * *
28694538 GATTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCACTCA
1 G-CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACACACGAAATGAGCGTGCGGGCGCTCA
** * * * * * * ** **
28694603 ATC-AGTCGGAGAGTCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCGGTATGCTACCGAT
65 GCCGA-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
** ** * *
28694667 CCTGCTATCGTAACCCTCGGTCCAATTTGA
129 CCTGCTGCCACAACCCTCGGTCCGACTTGA
* *
28694697 TCTTAGAC-TGGCAATGAACTCCATATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
28694725 TTAGACTGGG
Statistics
Matches: 503, Mismatches: 141, Indels: 36
0.74 0.21 0.05
Matches are distributed among these distances:
157 6 0.01
158 256 0.51
159 239 0.48
160 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACACACGAAATGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGACTTGA
Found at i:28694504 original size:317 final size:315
Alignment explanation
Indices: 28693905--28694724 Score: 952
Period size: 317 Copynumber: 2.6 Consensus size: 315
28693895 AACTCCGTAT
* * * * *
28693905 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAACGGGAGTGCAGGCGCTCAA
* *
28693970 CCAGTCGGAGAGGCAGAATGCATAAGTCG-GAGATTGGCCCGGTCCCCCCTACGTGCTGTCGAT-
66 CC-GTCGGAGAGGCAGAATGCGTAAGTCGAG-GA-TGGCCCGGTCCCCCCTGCGTGCTGTCGATC
** * * * * *
28694033 CTTGT-TGCTGCAACCCTC-AGTCTGATTTGATCTTAGACTGGGGATGAACTCCGTATGCATAAA
128 CTACTAT-C-GTAACCCTCGAGTCTGATCTGATCTTAGACTAGGAAGGAACTCCGTATGCATAAA
* **
28694096 TCAATCCACGAAATGAGCGTGCGGGTGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGA
191 TCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGA
*
28694161 TCAGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGG
256 TCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCG-CTAGG
* * * *
28694222 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAATGAAATGGGTGTGCAGTCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAACGGGAGTGCAGGCGCTCAA
* *
28694287 CCGTCTGGAGAGGCAGAATGCGTAAGCCGAGGACTGGCCCGGTCCCCCCTGCGTGCTGTTGATCC
66 CCGTC-GGAGAGGCAGAATGCGTAAGTCGAGGA-TGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
28694352 TACTATCGTAACCCTCGA-TCTGGTCTGATCTTAGACTAGGAAGGAACTCCGTATGCATAAGTCA
129 TACTATCGTAACCCTCGAGTCTGATCTGATCTTAGACTAGGAAGGAACTCCGTATGCATAAATCA
* * * * * * *
28694416 ACCCATGAAATGAGCGTGCGGGCACTGAGCTGGTCGAAGGGGTATAATGCGCAAGCCGGGGTTCG
194 ACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCA
** * * * * *
28694481 GTTCGATCCCTCTCTGTGTGCTGTCGGTCCTGCTGCCACAACCTTCGGTCCGGTTGG
259 GCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGCTAGG
* * * *
28694538 GATTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCACTCA
1 G-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAACGGGAGTGCAGGCGCTCA
* * * * * ** **
28694603 ATCAGTCGGAGAGTCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCGGTATGCTACCGATC
65 A-CCGTCGGAGAGGCAGAATGCGTAAGTCGAGGAT-GGCCCGGTCCCCCCTGCGTGCTGTCGATC
* ** * * *
28694668 CTGCTATCGTAACCCTCG-GTCCAATTTGATCTTAGACT-GGCAATGAACTCCATATGC
128 CTACTATCGTAACCCTCGAGTCTGATCTGATCTTAGACTAGG-AAGGAACTCCGTATGC
28694725 TTAGACTGGG
Statistics
Matches: 427, Mismatches: 66, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
316 10 0.02
317 406 0.95
318 10 0.02
319 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAACGGGAGTGCAGGCGCTCAA
CCGTCGGAGAGGCAGAATGCGTAAGTCGAGGATGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTA
CTATCGTAACCCTCGAGTCTGATCTGATCTTAGACTAGGAAGGAACTCCGTATGCATAAATCAAC
CCACGAAATGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAGC
CCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGCTAGG
Found at i:28695855 original size:159 final size:157
Alignment explanation
Indices: 28695442--28695856 Score: 406
Period size: 159 Copynumber: 2.6 Consensus size: 157
28695432 AACTCCGTAT
* * *
28695442 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * **
28695507 CCAGCCGAAGAGGTAGAATGCACAAGTCGAGGATCGACTCGGTCCCCCTACGTGCTGTTGATCTT
66 CCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTACGTGCTCTAGATCCC
* *** **
28695572 GCTATTGCAACCCTCAGTTGGGTCTGA
131 ACTACCACAACCCTCAGTTCAGTCTGA
* * * * * *
28695599 TCTTAGAC-TAGGAATAAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
28695663 GCCAGTCGAATAGGCATAGTGCGCAAGCCGGGGATC-AGCCCGATCCCCCTCTACGTGCTACTAG
65 GCCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGAT-CCCC-CTACGTGCT-CTAG
* * *
28695727 -TCCCACTGCCACAACCCTCGGTTCAG-CTAGG
126 ATCCCACTACCACAACCCTCAGTTCAGTCT-GA
* * * *
28695758 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
28695823 CCAGTCGAAGAGGCAGAATGCGTAAGTTGGGGAT
66 CCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGAT
28695857 TGGCCTTATC
Statistics
Matches: 203, Mismatches: 48, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 85 0.42
158 6 0.03
159 107 0.53
160 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTACGTGCTCTAGATCCC
ACTACCACAACCCTCAGTTCAGTCTGA
Found at i:28696802 original size:26 final size:26
Alignment explanation
Indices: 28696766--28696818 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28696756 CTGATCTGAT
*
28696766 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
28696792 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
28696818 C
1 C
28696819 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:28697449 original size:159 final size:159
Alignment explanation
Indices: 28697188--28697688 Score: 598
Period size: 159 Copynumber: 3.2 Consensus size: 159
28697178 CCGACTGGGG
* * *
28697188 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGACACGAGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
28697253 CAGTCGAAGAGGCAGAATGCCCAAGCC-AGGGACCGACCTGGTCCCCCCCTGTGTGCTGTCGATC
66 CAGTCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
*
28697317 CTGTTGTCGCAACCCTCGGTCCGGTCTGAT
130 CTGCTGTCGCAACCCTCGGTCCGGTCTGAT
* * * * *
28697347 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * ** *
28697411 CCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCTTCTGCGTGCTGTCGGTC
65 CCAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
** * * * **
28697476 CCACTGCCACAACCCTCGGTCTGG-CTGGGG
130 CTGCTGTCGCAACCCTCGGTCCGGTCT-GAT
* * *
28697506 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
28697571 CAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGT--CCCCCTGCGTGCTATCGTTCC
66 CAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCC
*
28697634 TGCTGTCGTAACCCTCGGTCCGGTCTGAT
131 TGCTGTCGCAACCCTCGGTCCGGTCTGAT
* * * *
28697663 CATAGACTTTGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
28697689 ATTAGACTGG
Statistics
Matches: 283, Mismatches: 54, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
157 57 0.20
158 5 0.02
159 219 0.77
160 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CAGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCC
TGCTGTCGCAACCCTCGGTCCGGTCTGAT
Found at i:28698421 original size:26 final size:26
Alignment explanation
Indices: 28698383--28698435 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28698373 GGCTCAAACT
*
28698383 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
28698409 CTTAGATAT-GGAATGAACTCCGTATG
1 CTTAGAT-TGGGAATGAACTCCGTATG
28698435 C
1 C
28698436 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:28698752 original size:158 final size:160
Alignment explanation
Indices: 28698408--28698752 Score: 394
Period size: 159 Copynumber: 2.2 Consensus size: 160
28698398 AACTCTGTAT
* *
28698408 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGTGCTCA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACAGGCGCTCA
* * * * * * * *
28698472 ACCGGCTGGAGAGGTAGAATGCGCAAGCCGAGGATTGGCCCAGTGCCCCTCTACGTGCTATCGAT
66 ACCGGCCGAAGAGGCAAAATACGCAAGCCGAGGATCGGCCCAGTGCCCCCCTACGTGCTACCGAT
* * * *
28698537 CCCACTGCCAAAACCCTCGGTCTGGCTAGG
131 CCCACTACCAAAACCCTCAGTCCGGCTAGA
* * * *
28698567 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGGCGCTTA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACAGGCGCTCA
* * * * *
28698631 ACCGGCCGAAGAGGCAAAATACGTAAGCCGGGGATCGGCTCGGT-CCCCCCTGCGTGCTACCGAT
66 ACCGGCCGAAGAGGCAAAATACGCAAGCCGAGGATCGGCCCAGTGCCCCCCTACGTGCTACCGAT
*** *
28698695 CCTGTTACCATAACCCTCAGTCCGGTCT-GA
131 CCCACTACCAAAACCCTCAGTCCGG-CTAGA
*
28698725 TCTTAGACTA-GGAATGAACTCCGTATGC
1 GCTTAGACTATGGAATGAACTCCGTATGC
28698753 TTAGATTGGG
Statistics
Matches: 154, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
158 60 0.39
159 94 0.61
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (160 bp):
GCTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACAGGCGCTCA
ACCGGCCGAAGAGGCAAAATACGCAAGCCGAGGATCGGCCCAGTGCCCCCCTACGTGCTACCGAT
CCCACTACCAAAACCCTCAGTCCGGCTAGA
Found at i:28698755 original size:26 final size:26
Alignment explanation
Indices: 28698738--28698804 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
28698728 TAGACTAGGA
28698738 ATGAACTCCGTATGCTTAGATTGGGG
1 ATGAACTCCGTATGCTTAGATTGGGG
* *
28698764 ATGAACTTCGTATACTTAGATTGGGG
1 ATGAACTCCGTATGCTTAGATTGGGG
*
28698790 ATGAATTCCGTATGC
1 ATGAACTCCGTATGC
28698805 CTAAGTCAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGATTGGGG
Found at i:28699366 original size:138 final size:138
Alignment explanation
Indices: 28699131--28699381 Score: 317
Period size: 138 Copynumber: 1.8 Consensus size: 138
28699121 CCGATCTGAT
** * * * * * *
28699131 CTTAGACTAGGAATGAACTCTGTATGTCTAAGTCTACCCACAAAATGAGCGTTCGGGCGCTGAGT
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
* * *
28699196 CGGTCGGAGAGGCATAATGCGAAAGCCAGGGATCGACACGGTCCCCCTCTATATGCTTTCGGTCT
66 CAGTCGGAGAGGCAGAATGCGAAAGCCAGGGATCGACACGATCCCCCTCTATATGCTTTCGGTCT
28699261 GGCTGGGG
131 GGCTGGGG
* *
28699269 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT-AGGCGTGCGGGTGCTCA
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGA-GCGTGCGGGCGCTCA
* * * *
28699332 GCCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGATCCCCCT
64 GCCAGTCGGAGAGGCAGAATGCGAAAGCCAGGGATCGACACGATCCCCCT
28699382 ACGTGCTGCT
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
137 2 0.02
138 92 0.98
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.20
Consensus pattern (138 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
CAGTCGGAGAGGCAGAATGCGAAAGCCAGGGATCGACACGATCCCCCTCTATATGCTTTCGGTCT
GGCTGGGG
Found at i:28700187 original size:26 final size:26
Alignment explanation
Indices: 28700149--28700201 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28700139 GGCTCAAACT
28700149 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
28700175 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
28700201 C
1 C
28700202 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:28700375 original size:26 final size:26
Alignment explanation
Indices: 28700336--28700386 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
28700326 GATCTGATCG
*
28700336 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
28700362 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
28700387 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:28700829 original size:356 final size:356
Alignment explanation
Indices: 28700174--28700945 Score: 1045
Period size: 356 Copynumber: 2.2 Consensus size: 356
28700164 AACTCCGTAT
* * * *
28700174 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * *
28700239 CCGACCGGAGAGGTAGAATGTGCAAGCCGGGGATCGACTCGAGCCCCCCCTGTGTACTGTCGATC
66 CCGACCGGAGAGGTAGAATGTGCAAGCCGAGGATCGACTCGAGCCCCCCCTGTGTACTATCAATC
* * ***
28700304 CTGCTGTCGCAATGCGCAATTCGATCTGATCGTAGACTGGGAATGAACTTTGTATGCTTAGACTG
131 CTGCTGTCGCAATGCGCAATCCGATCTGATCGTAGACTAGGAATGAACTCCATATGCTTAGACTG
* * *
28700369 GGGATGAACTCTGTATGCCTAAGTCAAGCCAGGAAATGAGCGTGCGGGTGCTCAGCCGGCCGGAG
196 GGGATGAACTCTGTATGCCTAAGTCAACCCAGGAAATGAGCGTGCCGGAGCTCAGCCGGCCGGAG
* * *
28700434 AGGCATAATGCACAAGCCAAGGATCAACCCGATCCCTCTCTACGTGCTACC-GATCTCGCTGCCG
261 AGGCATAATGCACAAACCAAGGATCAACCCGATCCCTCTCTACATGCT-CCTGATCCCGCTGCCG
*
28700498 GTCCTGCTGCCACAACCCTCGGTCC-GACTGGG
325 GTCCTGCTGCCACAACCCTCGGTCCAG-CTAGG
* * *
28700530 GTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCATGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
28700595 ACCGATCGGAGAGGTAGAATGCT-TAAGTCGAGGATCGGC-CTG-GTCCCCCCTGCT-TGCTATC
65 ACCGACCGGAGAGGTAGAATG-TGCAAGCCGAGGATCGACTC-GAGCCCCCCCTG-TGTACTATC
* * * *
28700656 AATCCTGCTGTCGTAA-GTCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTA
127 AATCCTGCTGTCGCAATG-CGCAATCCGATCTGATCGTAGACTAGGAATGAACTCCATATGCTTA
* * *
28700720 GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCCGGAGCTCAGTCGGT
191 GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAGGAAATGAGCGTGCCGGAGCTCAGCCGGC
* * ** *
28700785 CGGAGAGGCATAATGCATAAATCGGGGATCAGCCCGATCCCTCTCTACATGCTCCTGATCCCGCT
256 CGGAGAGGCATAATGCACAAACCAAGGATCAACCCGATCCCTCTCTACATGCTCCTGATCCCGCT
* *
28700850 GTCGGTCCTGTTGCCACAACCCTCGGTCCAGCTAGG
321 GCCGGTCCTGCTGCCACAACCCTCGGTCCAGCTAGG
*
28700886 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
28700946 TCACGAGCTC
Statistics
Matches: 363, Mismatches: 46, Indels: 15
0.86 0.11 0.04
Matches are distributed among these distances:
355 23 0.06
356 282 0.78
357 57 0.16
358 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (356 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CCGACCGGAGAGGTAGAATGTGCAAGCCGAGGATCGACTCGAGCCCCCCCTGTGTACTATCAATC
CTGCTGTCGCAATGCGCAATCCGATCTGATCGTAGACTAGGAATGAACTCCATATGCTTAGACTG
GGGATGAACTCTGTATGCCTAAGTCAACCCAGGAAATGAGCGTGCCGGAGCTCAGCCGGCCGGAG
AGGCATAATGCACAAACCAAGGATCAACCCGATCCCTCTCTACATGCTCCTGATCCCGCTGCCGG
TCCTGCTGCCACAACCCTCGGTCCAGCTAGG
Found at i:28706768 original size:26 final size:26
Alignment explanation
Indices: 28706739--28706791 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28706729 CCGATCCGAT
28706739 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
28706765 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
28706791 C
1 C
28706792 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:28707278 original size:159 final size:158
Alignment explanation
Indices: 28706764--28707442 Score: 611
Period size: 159 Copynumber: 4.3 Consensus size: 158
28706754 AACTCCGTAT
* * * * * * * *
28706764 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
** * * * **
28706828 GCCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCTTTTGCATGCTGTCGGT
65 GCCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCGATCCCC-TCTGCATGCTGTCAAT
* *
28706893 CCCGCTGCCACAACCCTCGGTCCT-ACTGGG
129 CCCGCTGCCACAACCCTCAGT-CTGATTGGG
* * * *
28706923 ACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* *
28706988 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGAT-CCCTCCTGCATGCTGTCAATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCGATCCCCT-CTGCATGCTGTCAATC
* ** ** * * * *
28707052 CTGCTATCGGAGCCCTCGGTCCGATCT-GA
130 CCGCTGCCACAACCCTCAGTCTGAT-TGGG
* ** * * * * *
28707081 TCTTAGAC-TGGGAATGAACTCTATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* ** * * * * *
28707145 GCCGACC-GAAGAGGCATAATGTGCAAGTCC-GGGATCGGTTCGGTCCCTCTCTGCGTGCTATCG
65 GCCGACCAG-AGAGGCAGAATGCACAAG-CCGGGGATCGGTCCGATCCC-CTCTGCATGCTGTCA
* *
28707208 ATCCTGCTGCCACAACCCTCAGTCTGGTTGGG
127 ATCCCGCTGCCACAACCCTCAGTCTGATTGGG
* * *
28707240 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * ** * * * * *
28707305 CCGGCCAGAGTGGCAGAATGCACAAGCTAGGGATTGG-CCTGGTCCCCCCTGCGTGTTGTCAATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGTCC-GATCCCCTCTGCATGCTGTCAATC
* * *
28707369 CCACTGCCATAACCCTCAGTCTGGTTGGG
130 CCGCTGCCACAACCCTCAGTCTGATTGGG
*
28707398 GCTTAGACATGGAATGAAC-CCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
28707443 TAGGTGTGTA
Statistics
Matches: 422, Mismatches: 84, Indels: 30
0.79 0.16 0.06
Matches are distributed among these distances:
157 29 0.07
158 178 0.42
159 210 0.50
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCGATCCCCTCTGCATGCTGTCAATCC
CGCTGCCACAACCCTCAGTCTGATTGGG
Found at i:28707367 original size:317 final size:317
Alignment explanation
Indices: 28706765--28707369 Score: 822
Period size: 317 Copynumber: 1.9 Consensus size: 317
28706755 ACTCCGTATG
* * **
28706765 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTGAGC
1 CTTAGACTAGGGATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCAGGCACTGAGC
* * * * *
28706830 CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCTTTTGCATGCTGTCGGTCC
66 CGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCTTCTGCATGCTATCGATCC
* *
28706895 CGCTGCCACAACCCTCGGTCCTACTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCAGTCCTACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
28706960 CCTACGAAACGAGCATGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGG
196 CCCAAGAAACGAGCATGCGAGCGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGG
*
28707025 CCCGATCCCTCCTGCATGCTGTCAATCCTGCTATCGGAGCCCTCGGTCCGATCTGAT
261 CCCGATCCCCCCTGCATGCTGTCAATCCTGCTATCGGAGCCCTCGGTCCGATCTGAT
* * *
28707082 CTTAGACT-GGGAATGAACTCTATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACTAGGG-ATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCAGGCACTGAG
* * * *
28707146 CCGACCGAAGAGGCATAATGTGCAAGTCC-GGGATCGGTTCGGT-CCCTCTCTGCGTGCTATCGA
65 CCGACCGAAGAGGCATAATGCGCAAG-CCGGGGATCGGTCCGATCCCCT-TCTGCATGCTATCGA
* ** *
28707209 TCCTGCTGCCACAACCCTCAGT-CTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
128 TCCCGCTGCCACAACCCTCAGTCCT-ACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * *
28707273 CCAACCCAAGAAACGGGCATGCGAGCGCTCAGCCGGCCAGAGTGGCAGAATGCACAAGCTAGGGA
192 CCAACCCAAGAAACGAGCATGCGAGCGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCAGGGA
* * * * *
28707338 TTGGCCTGGTCCCCCCTGCGTGTTGTCAATCC
257 TCGGCCCGATCCCCCCTGCATGCTGTCAATCC
28707370 CACTGCCATA
Statistics
Matches: 248, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
316 9 0.04
317 237 0.96
318 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
CTTAGACTAGGGATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCAGGCACTGAGC
CGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCTTCTGCATGCTATCGATCC
CGCTGCCACAACCCTCAGTCCTACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCAAGAAACGAGCATGCGAGCGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGG
CCCGATCCCCCCTGCATGCTGTCAATCCTGCTATCGGAGCCCTCGGTCCGATCTGAT
Found at i:28707405 original size:317 final size:317
Alignment explanation
Indices: 28706764--28707442 Score: 796
Period size: 317 Copynumber: 2.1 Consensus size: 317
28706754 AACTCCGTAT
* **
28706764 GCTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTGA
1 GCTTAGACT-GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTGA
* * * * *
28706828 GCCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCTTTTGCATGCTGTCGGT
65 GCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCTTCTGCATGCTATCGAT
* *
28706893 CCCGCTGCCACAACCCTCGGTCCTACTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCC
130 CCCGCTGCCACAACCCTCAGTCCTACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * *
28706958 AACCTACGAAACGAGCATGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATC
195 AACCCAAGAAACGAGCATGCGAGCGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATC
* ** * * * *
28707023 GGCCCGATCCCTCCTGCATGCTGTCAATCCTGCTATCGGAGCCCTCGGTCCGATCTGA
260 GGCCCGATCCCCCCTGCATGCTGTCAATCCCACTACCAGAACCCTCAGTCCGATCTGA
* * * * *
28707081 TCTTAGACTGGGAATGAACTCTATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTGAG
* * * *
28707146 CCGACCGAAGAGGCATAATGTGCAAGTCC-GGGATCGGTTCGGT-CCCTCTCTGCGTGCTATCGA
66 CCGACCGAAGAGGCATAATGCGCAAG-CCGGGGATCGGTCCGATCCCCT-TCTGCATGCTATCGA
* ** *
28707209 TCCTGCTGCCACAACCCTCAGT-CTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
129 TCCCGCTGCCACAACCCTCAGTCCT-ACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * *
28707273 CCAACCCAAGAAACGGGCATGCGAGCGCTCAGCCGGCCAGAGTGGCAGAATGCACAAGCTAGGGA
193 CCAACCCAAGAAACGAGCATGCGAGCGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCAGGGA
* * * * * * * * * *
28707338 TTGGCCTGGTCCCCCCTGCGTGTTGTCAATCCCACTGCCATAACCCTCAGTCTGGT-TGGG
258 TCGGCCCGATCCCCCCTGCATGCTGTCAATCCCACTACCAGAACCCTCAGTCCGATCT-GA
* * *
28707398 GCTTAGACAT-GGAATGAAC-CCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
28707443 TAGGTGTGTA
Statistics
Matches: 302, Mismatches: 54, Indels: 13
0.82 0.15 0.04
Matches are distributed among these distances:
316 31 0.10
317 268 0.89
318 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTGAG
CCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCTTCTGCATGCTATCGATC
CCGCTGCCACAACCCTCAGTCCTACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCAAGAAACGAGCATGCGAGCGCTCAACCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCG
GCCCGATCCCCCCTGCATGCTGTCAATCCCACTACCAGAACCCTCAGTCCGATCTGA
Found at i:28707963 original size:26 final size:26
Alignment explanation
Indices: 28707934--28707986 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28707924 CCGGTCTGAT
28707934 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
28707960 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
28707986 C
1 C
28707987 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:28708327 original size:159 final size:158
Alignment explanation
Indices: 28707959--28708461 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 158
28707949 AACTCTGTAT
** *
28707959 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * **
28708024 CCGACCGGAGAGGTAGAATGTGCAAGCCAAGGATCGCCCTGATCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCAAGGACCGCCCTGATCCCCCCTGCATGCTACCGATCC
** * * * * *
28708089 GGCTGTCGCAACTCTCGGTCTGATCCGA
131 CACTGCCACAACCCTCGGTCCGAGCCGA
* * * * *
28708117 TCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * *
28708181 GCCGACCGGAGAGGCATAATGCATAAGCCGGGGACCAGCCC-GGTCCCCCTCTGCATGCTACCGG
65 GCCGACCGGAGAGGCAGAATGCACAAGCCAAGGACC-GCCCTGATCCCCC-CTGCATGCTACCGA
* *
28708245 TCCCACTGCCACAACCCTTGGTCCG-GCCGGG
128 TCCCACTGCCACAACCCTCGGTCCGAGCC-GA
* ** * *
28708276 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * * * * **
28708341 CC-AGTCAGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTTGGTCCCCCCTGCGTGCTGTCGATC
66 CCGA-CCGGAGAGGCAGAATGCACAAGCCAAGGACCGCCCTGATCCCCCCTGCATGCTACCGATC
* *
28708405 CTGA-TGCCGCAACCCTCGGTCCG-GTCCGA
130 C-CACTGCCACAACCCTCGGTCCGAG-CCGA
* * *
28708434 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
28708462 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 62, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 149 0.55
159 121 0.44
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCAAGGACCGCCCTGATCCCCCCTGCATGCTACCGATCC
CACTGCCACAACCCTCGGTCCGAGCCGA
Found at i:28708464 original size:26 final size:26
Alignment explanation
Indices: 28708435--28708487 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28708425 CCGGTCCGAT
*
28708435 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28708461 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28708487 C
1 C
28708488 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28715454 original size:159 final size:158
Alignment explanation
Indices: 28715099--28715546 Score: 442
Period size: 159 Copynumber: 2.8 Consensus size: 158
28715089 AACTCCGTTT
* * *
28715099 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAACGTGCGGCCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCCACTCAG
* * * * * *
28715164 CCGATCGAAGAGGTAAAATGCACGAGTTGGGGATCGACCCGGTCCTCCCTGCGTGCTATCGATCC
66 CAGATCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCCGATCCTCCCTACGTGCTATCGATCC
* ** *
28715229 TACTGTCGTAACCCTCGGTCCGGTCTGA
131 TACTGCCACAACCCTCGGTCCGGTCGGA
* ** * * *
28715257 TCTTAGAC-TGGGAATGAACTCCGTATGTATAAGTCAACCCATGAAACGAGCGTGCAGG-CGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCCACTC
* * * ** *
28715320 AGCTAG-TCGAAGAGGCATAATGCCCAAGTCGGGGATCTG-CTCGATCCCTTTCTATGTGCTATC
64 AGC-AGATCGAAGAGGCAAAATGCACAAGTCGGGGATC-GACCCGAT-CCTCCCTACGTGCTATC
*
28715383 GATCCTACTGCCACAACCCTCGGTCCGGGT-GGG
126 GATCCTACTGCCACAACCCTCGGTCC-GGTCGGA
* *
28715416 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCC-CTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCCACTCA
* * * ** * * * *
28715480 GCAGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCAGA-CCGATCCCCCCTACGTGCTACCGAT
65 GCAGATCGAAGAGGCAAAATGCACAAGTCGGGGATC-GACCCGATCCTCCCTACGTGCTATCGAT
28715544 CCT
129 CCT
28715547 GCAGCCGTAA
Statistics
Matches: 234, Mismatches: 46, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 103 0.44
159 125 0.53
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCCACTCAG
CAGATCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCCGATCCTCCCTACGTGCTATCGATCC
TACTGCCACAACCCTCGGTCCGGTCGGA
Found at i:28715624 original size:25 final size:26
Alignment explanation
Indices: 28715576--28715624 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
28715566 TGATCCGATC
28715576 TTAGACTGGGGATGAACTCCGTATGG
1 TTAGACTGGGGATGAACTCCGTATGG
*
28715602 TTAGACTGGGG-TGAACTCTGTAT
1 TTAGACTGGGGATGAACTCCGTAT
28715625 CCCTATGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.22, C:0.14, G:0.33, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTCCGTATGG
Found at i:28716630 original size:159 final size:158
Alignment explanation
Indices: 28716328--28716638 Score: 349
Period size: 159 Copynumber: 2.0 Consensus size: 158
28716318 AGCCGATCGG
* ** * * * *
28716328 AGAGGCAGAATGCACAAGCTGGGGATCAGCCCGTTCCCCCCTGCGTGCTGTTGATCCTGCTGCCG
1 AGAGGCAGAATGCACAAGCTGAGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCCCGCTGCCA
* * ** *
28716393 CAACCCTCAGTCCGATCTGATCTTACACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAA
66 CAACCCTCAGTCCGAGCTGAGCTTACACTGGGAATGAACTCCCTATGCATAAGCCAACCCATGAA
* * *
28716458 ATGAGTGTGTGGGTGCTGAGCCTACCGA
131 ACGAGCGTATGGGTGCTGAGCCTACCGA
* * *
28716486 AGAGGCATAATGCGCAAGCTGAGGATC-GACCCAATCCCCCTCTACGTGCTGTCGGTCCCGCTGC
1 AGAGGCAGAATGCACAAGCTGAGGATCAG-CCCAATCCCCC-CTACGTGCTGTCGATCCCGCTGC
* * * *
28716550 CACAACCCTCGGTCCG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA
64 CACAACCCTCAGTCCGAGCT-GAGCTTACAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCA
* *
28716613 TGAAACGGGCGTATGGGTGCTTAGCC
127 TGAAACGAGCGTATGGGTGCTGAGCC
28716639 GATCGGAAAG
Statistics
Matches: 125, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 35 0.28
159 88 0.70
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
AGAGGCAGAATGCACAAGCTGAGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCCCGCTGCCA
CAACCCTCAGTCCGAGCTGAGCTTACACTGGGAATGAACTCCCTATGCATAAGCCAACCCATGAA
ACGAGCGTATGGGTGCTGAGCCTACCGA
Found at i:28716651 original size:159 final size:158
Alignment explanation
Indices: 28716266--28716757 Score: 418
Period size: 158 Copynumber: 3.1 Consensus size: 158
28716256 CTTAGACTAA
* * * * * * *
28716266 GAATGAACTCCGTATGCCTAAACCAACCCACGGAATGAGCATGCGGGCGCTCAGCCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCAGCCGATCGGAAA
* * * ** * * * *
28716331 GGCAGAATGCACAAGCTGGGGATCAGCCCGTTCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAA
66 GGCAAAATGCGCAAGCTGAGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCCCGCTGCCACAA
* *
28716396 CCCTCAGTCCGATCTGATCTTACACTGG
131 CCCTCAGTCCGAGCTGAGCTTACACTGG
* * * * * * *
28716424 GAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGTGTGTGGGTGCTGAGCCTA-CCGAAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCAGCCGATCGGAA-
* *
28716488 AGGCATAATGCGCAAGCTGAGGATC-GACCCAATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCA
65 AGGCAAAATGCGCAAGCTGAGGATCAG-CCCAATCCCCC-CTACGTGCTGTCGATCCCGCTGCCA
* * *
28716552 CAACCCTCGGTCCG-GCTGGGGCTTAGACAT-G
128 CAACCCTCAGTCCGAGCT-GAGCTTACAC-TGG
* * * * *
28716583 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTATGGGTGCTTAGCCGATCGGAAA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCAGCCGATCGGAAA
* * * * * ** * ** * *
28716648 GGCAAAATTCGCAAG-TCGGGGATCGGCCCGATCCCTCCTGTGTACTGTCGATCCTACTGTCGCA
66 GGCAAAATGCGCAAGCT-GAGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCCCGCTGCCACA
* * * * * *
28716712 ACCCTCGGTCTGATCCGATCTTAGACTGG
130 ACCCTCAGTCCGAGCTGAGCTTACACTGG
28716741 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
28716758 TTAGACTGCG
Statistics
Matches: 265, Mismatches: 59, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 135 0.51
159 119 0.45
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCAGCCGATCGGAAA
GGCAAAATGCGCAAGCTGAGGATCAGCCCAATCCCCCCTACGTGCTGTCGATCCCGCTGCCACAA
CCCTCAGTCCGAGCTGAGCTTACACTGG
Found at i:28717136 original size:26 final size:26
Alignment explanation
Indices: 28717098--28717147 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
28717088 CCATTCCAAT
28717098 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
28717124 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
28717148 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:28718196 original size:26 final size:26
Alignment explanation
Indices: 28718167--28718219 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
28718157 GGCTCAAACT
28718167 CTTAGA-CTGGGAATGAACT-CAGTATG
1 CTTAGACCT-GGAATGAACTAC-GTATG
28718193 CTTAGACCTGGAATGAACTACGTATG
1 CTTAGACCTGGAATGAACTACGTATG
28718219 C
1 C
28718220 CTAAGCCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCTGGAATGAACTACGTATG
Found at i:28718838 original size:196 final size:187
Alignment explanation
Indices: 28718351--28719045 Score: 508
Period size: 184 Copynumber: 3.7 Consensus size: 187
28718341 TCCAGCTGGG
* * * ** * *
28718351 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCATGTGGGTGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCGCTCA
* * * * * * * ** *
28718415 ACC-GGTCGGAGAGGTAGAATGTGC-ATGCCGGGGATCGGCCCAAT-CCCCCTACGTGCT--A--
65 GCCAGCT-GAAGAGGTAGAATG-CCTAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTCGATC
* * * * * ** *
28718473 CTGATGCT-GCTGCCACAACCCTCGATCCGGTCTGATATTAGAATTGGAATGAACTCCATAT
128 CTGAT-CTGGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAATAAGAATGAACTCGA-AT
* * * *
28718534 GCTTAGGC-TGGAGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * *
28718598 ACCAGTCGGAA-AGGTAGAATGCGC-AAG-CTGAGGATCGCCCCGGTCCCCCCTGCGTGCTGCCG
65 GCCAG-CTGAAGAGGTAGAATGC-CTAAGCCAG-GGATCGACCCGGTCCCCCCTGCGTGCT--CG
* *
28718660 ATCCTGCTGCTGGTCTTGGTACTGCAACCCTCGGTCCAGTCCGATCTTAGAATAAGAATGAACTC
125 ATCCTGAT-CTGG-C-T-GT-C-GCAACCCTCGGTCCGGTCCGATCTTAGAATAAGAATGAACTC
*
28718725 TGAAG
184 -GAAT
* * **
28718730 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* *
28718795 CCAGCTGAAGAGGTAGAATGCCTAAGCCAGGGATCGACCCGGTCCCCCCTACATGCT--AT-C-G
66 CCAGCTGAAGAGGTAGAATGCCTAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTCGATCCTG
* * * * * *
28718856 ATCTTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGGATGAACTCCGTAT
131 ATCTGGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAATAAGAATGAACT-CGAAT
* * * *
28718914 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGGAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * * *
28718979 CC-GGTCGGAGAGCTAGAATGCGTAAACCGGGGATCGGCCCGATCCCCCAATGCGTGCTATCGAT
66 CCAGCT-GAAGAGGTAGAATGCCTAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGC--TCGAT
28719043 CCT
127 CCT
28719046 ACTGTCACAA
Statistics
Matches: 407, Mismatches: 72, Indels: 58
0.76 0.13 0.11
Matches are distributed among these distances:
182 5 0.01
183 77 0.19
184 148 0.36
185 7 0.02
186 2 0.00
187 2 0.00
188 2 0.00
189 5 0.01
190 10 0.02
191 2 0.00
192 3 0.01
193 1 0.00
194 1 0.00
195 6 0.01
196 129 0.32
197 7 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (187 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCAGCTGAAGAGGTAGAATGCCTAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTCGATCCTG
ATCTGGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAATAAGAATGAACTCGAAT
Found at i:28718998 original size:184 final size:185
Alignment explanation
Indices: 28718683--28719100 Score: 473
Period size: 184 Copynumber: 2.3 Consensus size: 185
28718673 TCTTGGTACT
** * * * * * *
28718683 GCAACCCTCGGTCCAGTCCGATCTTAGAATAAGAATGAACTCTGAAGGCTTAGACATGGAATGAA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGAGGATGAACTCCGTATGCTTAGACATGGAATGAA
* * * * *
28718748 CTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCATTCAGCCAGCTGAAGAGGTAGAA
66 CTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCTGAAGAGCTAGAA
* * * * *
28718813 TGCCTAAGCCAGGGATCGACCCGGTCCCCC-CTACATGCTATCGATCTTGCTGTC
131 TGCCTAAACCAGGGATCGACCCGATCCCCCAATACATGCTATCGATCCTACTGTC
28718867 GCAACCCTCGGTCTGGTCCGATCTTAGACTGAGGATGAACTCCGTATGCTTAGACATGGAATGAA
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGAGGATGAACTCCGTATGCTTAGACATGGAATGAA
* * * * * *
28718932 CTCCCTGTGCCTAAGCCAACCCATGGAACGAGCGTGCAGGCGCTCAGCC-GGTCGGAGAGCTAGA
66 CTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCT-GAAGAGCTAGA
* * * * *
28718996 ATGCGTAAACCGGGGATCGGCCCGATCCCCCAATGCGTGCTATCGATCCTACTGTC
130 ATGCCTAAACCAGGGATCGACCCGATCCCCCAATACATGCTATCGATCCTACTGTC
* ** ** * *
28719052 ACAACCCTCAATCTGGTCTAATCTTAGACTG-GGAATAAACTTCGTATGC
1 GCAACCCTCGGTCTGGTCCGATCTTAGACTGAGG-ATGAACTCCGTATGC
28719101 CTAAGTCAAC
Statistics
Matches: 195, Mismatches: 36, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
183 2 0.01
184 135 0.69
185 58 0.30
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (185 bp):
GCAACCCTCGGTCTGGTCCGATCTTAGACTGAGGATGAACTCCGTATGCTTAGACATGGAATGAA
CTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCTGAAGAGCTAGAA
TGCCTAAACCAGGGATCGACCCGATCCCCCAATACATGCTATCGATCCTACTGTC
Found at i:28719216 original size:158 final size:159
Alignment explanation
Indices: 28719054--28719342 Score: 334
Period size: 158 Copynumber: 1.8 Consensus size: 159
28719044 CTACTGTCAC
* * * **
28719054 AACCCTCAATCTGG-TCTAATCTTAGAC-TGGGAATAAACTTCGTATGCCTAAGTCAACCAACGA
1 AACCCTCAATCTGGCTC-AAGCTTAGACAT-GGAATAAACTACCTATGCCTAACCCAACCAACGA
* * * *
28719117 AATGAGTGTGCGGGCGCTGAGCCAGCCAG-GAGGCATAAT-GCGCAAGCCGGGGATCGACCCAGT
64 AACGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCA-AATCGCGCAAGCCGGGGATCGACCCAGT
28719180 CCCCTTCTGCGTGCTGCCGGTCCCGCTACCAT
128 CCCCTTCTGCGTGCTGCCGGTCCCGCTACCAT
** * * *
28719212 AACCCTCGGTCTGGCTCAAGCTTAGACATGGAATGAACTACCTATGCGTAACCCAACCCACGAAA
1 AACCCTCAATCTGGCTCAAGCTTAGACATGGAATAAACTACCTATGCCTAACCCAACCAACGAAA
* * * * * * *
28719277 CGGGCGTGCGGGCGCTCAGTCAACCGGAGAGGCAGATCGTGCAAGTCGGGGATCGGCCCAGTCCC
66 CGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAAATCGCGCAAGCCGGGGATCGACCCAGTCCC
28719342 C
131 C
28719343 CCAGTGTGCT
Statistics
Matches: 106, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
158 72 0.68
159 34 0.32
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
AACCCTCAATCTGGCTCAAGCTTAGACATGGAATAAACTACCTATGCCTAACCCAACCAACGAAA
CGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAAATCGCGCAAGCCGGGGATCGACCCAGTCCC
CTTCTGCGTGCTGCCGGTCCCGCTACCAT
Found at i:28720459 original size:26 final size:26
Alignment explanation
Indices: 28720430--28720482 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28720420 CTGATCCGAT
28720430 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
28720456 CTTAGACTGGGGATGGGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28720482 C
1 C
28720483 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28721151 original size:26 final size:26
Alignment explanation
Indices: 28721115--28721167 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28721105 CTGATCCAAT
28721115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28721141 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28721167 C
1 C
28721168 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28721443 original size:685 final size:684
Alignment explanation
Indices: 28720208--28721506 Score: 1817
Period size: 685 Copynumber: 1.9 Consensus size: 684
28720198 GCAAGCCGGG
* * *
28720208 GATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCAACCACAACCCTTAGTTCTGCTGGGGC
1 GATCGACCCGGTCCCCCTCTGCATGCTACCGGTCCCGCAACCACAACCCTTAGTTCCGCTGGGGC
* ** *
28720273 TTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCATGAAATGGGTGTACGGGCACTCAGCC
66 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCACTCAGCC
* * * ** * * *
28720338 GGCCAGAGAGGCAGAATGCGTAAGCTGGGGATCAGTCTGGTCCCCCCTGCATGCTGTCGATCCTG
131 AGCCAGAGAGGCAGAAAGCGAAAGCCAGGGATCAGTCCGATCCCCCCTGCATGCTGTCGATCCTA
* * *
28720403 CTGTCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
196 CTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
** * *
28720468 ATGGGCTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCAGACGCTCAGTCAGTCGGAGAGG
261 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCAGACGCTCAGCCAGTCGGAGAGG
* ** * *
28720533 CCAGTCGGAGAGACATAATGACAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTATCGATCT
326 CCAGTCGGAGAGACATAATGACAAGCCGGGGATCAACCCAATCCCACTCTACGTGCTATCGATCC
* * *
28720598 CGCTACCGGTCCAGCTACCACAACCCTCATTCCGGCTAGGGCTTAGACATGGAATGAACTCTGTA
391 CGCTACCGGTCCAGCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTA
* * *
28720663 TGCCTAAGCCAACCTACGAAACGAACGTGCGAGCGCTCAGTCGATCGAAGAGGCAGAATGCGTAA
456 TGCCTAAGCCAACCAACGAAACGAACGTGCGAGCGCTCAGCCGACCGAAGAGGCAGAATGCGTAA
* * * * *
28720728 GCCGGGGATCGGCTCGATCCCCCTTACGTGCTATCGATCTTGCTACCGCAACCCTCGATCCGTTT
521 GCCGAGGATCAGATCGATCCCCCTTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATT
* *
28720793 TGATCTTAGACTGGGAATGAACTCAGTATACCTAAGTCAACCCACGAAACGAGCGTTCAGGCACT
586 CGATCTTAGACTGGAAATGAACTCAGTATACCTAAGTCAACCCACGAAACGAGCGTTCAGGCACT
28720858 GAGCCGATCGAAGAGGCATAATACGTAAGTCAAA
651 GAGCCGATCGAAGAGGCATAATACGTAAGTCAAA
** * * *
28720892 GATCGACTTGGTCCCCCTCTGTATGCTACCGTTCCCGCTACCACAACCCTTAGTTCCGCTGGGGC
1 GATCGACCCGGTCCCCCTCTGCATGCTACCGGTCCCGCAACCACAACCCTTAGTTCCGCTGGGGC
* * **
28720957 TTAGACATGGAATGAACTCCCTATGCCTAAGCTAAGCCACAAAATGGGCGTACGGGTGCTCAGCC
66 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCACTCAGCC
* * * * *
28721022 AGTCGGAGAGGCAGAAAGCGCAAAGCCAGGGATCGGTCCGATCCTCTCTGCATGCTGTCGATCCT
131 AGCCAGAGAGGCAGAAAGCG-AAAGCCAGGGATCAGTCCGATCCCCCCTGCATGCTGTCGATCCT
*
28721087 ATTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
195 ACTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
28721152 GATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAG
260 GATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCAGACGCTCAGCCAGTCGGAGAG
* ** *
28721217 GCCAGTCGGAGAGACATAATGCACAAGTCGGGGATCAACCCAATCCCACTCTGTGTGCTGTCGAT
325 GCCAGTCGGAGAGACATAATG-ACAAGCCGGGGATCAACCCAATCCCACTCTACGTGCTATCGAT
* * * *
28721282 CCCGCTACCGGTCTAGCTGCCACAATCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCG
389 CCCGCTACCGGTCCAGCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCG
* * * * *
28721347 TATGCCTAAGCCAACCAACGAAACTAGCGTGCGAGTGCTCAGCCGACCGGAGAGGCAGAATGTGT
454 TATGCCTAAGCCAACCAACGAAACGAACGTGCGAGCGCTCAGCCGACCGAAGAGGCAGAATGCGT
* * ** * *** *
28721412 AAGTCGAGGATCAGATCGGTCCTTC-TACGTGCTGTCGATCCTGCTGTTGCAACCCTCGATTCGA
519 AAGCCGAGGATCAGATCGATCCCCCTTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGA
* *
28721476 TTCGATCTTAGATTGGAAATGAACTCCGTAT
584 TTCGATCTTAGACTGGAAATGAACTCAGTAT
28721507 GCTTAGACTG
Statistics
Matches: 529, Mismatches: 84, Indels: 3
0.86 0.14 0.00
Matches are distributed among these distances:
684 130 0.25
685 232 0.44
686 167 0.32
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (684 bp):
GATCGACCCGGTCCCCCTCTGCATGCTACCGGTCCCGCAACCACAACCCTTAGTTCCGCTGGGGC
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCACTCAGCC
AGCCAGAGAGGCAGAAAGCGAAAGCCAGGGATCAGTCCGATCCCCCCTGCATGCTGTCGATCCTA
CTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
ATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCAGACGCTCAGCCAGTCGGAGAGG
CCAGTCGGAGAGACATAATGACAAGCCGGGGATCAACCCAATCCCACTCTACGTGCTATCGATCC
CGCTACCGGTCCAGCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCAACGAAACGAACGTGCGAGCGCTCAGCCGACCGAAGAGGCAGAATGCGTAA
GCCGAGGATCAGATCGATCCCCCTTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATT
CGATCTTAGACTGGAAATGAACTCAGTATACCTAAGTCAACCCACGAAACGAGCGTTCAGGCACT
GAGCCGATCGAAGAGGCATAATACGTAAGTCAAA
Found at i:28721715 original size:26 final size:26
Alignment explanation
Indices: 28721675--28721744 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
28721665 TCTTTGACTA
* *
28721675 GGAATGAAATTCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
28721701 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
*
28721727 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
28721745 CTAAGCCAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:28722743 original size:26 final size:26
Alignment explanation
Indices: 28722707--28722759 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28722697 CCAGTTCAAT
28722707 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
28722733 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28722759 C
1 C
28722760 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28724848 original size:159 final size:158
Alignment explanation
Indices: 28724392--28724850 Score: 438
Period size: 158 Copynumber: 2.9 Consensus size: 158
28724382 TTGTCGATCC
* *
28724392 TGCTGTCGATCTTGCTACCCCAACCCTCGATCCGGCTGGGTCTTAGACATGGAATGAACTCCGTA
1 TGCTGTCGATCCTGCTACCACAACCCTCGATCCGGCTGGGTCTTAGACATGGAATGAACTCCGTA
* ** * * * *
28724457 TGCCTAAGCCAACCCATGAAACGAGCATGCGGGCATTCAACCGGTCGGAGAGGCAGAATGCGTAA
66 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAA
* * * * * *
28724522 GTCGTGGACCAACCCGATCCCCCTTACG
131 GCCGAGGATCGACCCGATCCCCCTGACA
** * * * *
28724550 TGCTGTCGATCCTGCTACCGTAACCCTC-AGTCTGGTTCGATCTTAGAC-TGGGAATGAACTCCG
1 TGCTGTCGATCCTGCTACCACAACCCTCGA-TCCGGCTGGGTCTTAGACAT-GGAATGAACTCCG
* * * * * ** * * **
28724613 TATGCCTAAGTCAACCGATGAAACGAGCGTGTGGGTGCTAAGTTAGCTGGAGAGGCATAATTTGC
64 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGC
* *
28724678 AAGCCGGGGATCGGCCCGATCACCCTCTGA-A
129 AAGCCGAGGATCGACCCGATC-CCC-CTGACA
* * * * * *
28724709 TGCTATCGATCGTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGTCGATCCTGCTACCACAACCCTCGATCCGGCTGGGTCTTAGACATGGAATGAACTCCGTA
** ** * * *
28724774 TGCCTAAGCCAACCCACAAAACGAATGTGCGGGCGGTCAGCCAGCCGGAGAGGTAGGATGCGCAA
66 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAA
28724839 GCCGAGGATCGA
131 GCCGAGGATCGA
28724851 ATGGGTGGTA
Statistics
Matches: 231, Mismatches: 64, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
157 2 0.01
158 115 0.50
159 109 0.47
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
TGCTGTCGATCCTGCTACCACAACCCTCGATCCGGCTGGGTCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAA
GCCGAGGATCGACCCGATCCCCCTGACA
Found at i:28725497 original size:26 final size:26
Alignment explanation
Indices: 28725446--28725498 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28725436 GGCTCAAACT
*
28725446 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
28725472 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACATATG
28725498 C
1 C
28725499 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:28726024 original size:26 final size:26
Alignment explanation
Indices: 28725986--28726038 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
28725976 CTCGTCTGAT
28725986 CTTAGACTAGGAATGAAC-TCAGTATG
1 CTTAGACTAGGAATGAACTTCA-TATG
28726012 CTTAGAC-ATGGAATGAACTTCATATG
1 CTTAGACTA-GGAATGAACTTCATATG
28726038 C
1 C
28726039 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCATATG
Found at i:28726124 original size:197 final size:196
Alignment explanation
Indices: 28725757--28726144 Score: 442
Period size: 197 Copynumber: 2.0 Consensus size: 196
28725747 ATGCTACTGA
* * *
28725757 TCCTACTGCCGCAACCCTCAGTCCGATTTGATCATACACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTACTGCCGCAACCCTCAGTCCGATCTGATCATACACTAGGAATGAACTCAGTATGCTTAGAC
* * * * * * * *
28725822 TGGGGATAAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGTGCGGGTGCTCAACCCGCTGG
66 TGGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAACCCGCTGG
** * * *
28725887 AGAGGCAGAATGCACAAGCCGGGGATCGACCCAATCCCCCCCTGCATGCTATCGATCCTGCTGCT
131 AGACACAGAATGCACAAGCCAGGGACCGACCCAAT-CCCCCCTACATGCTATCGATCCTGCTGCT
28725952 AG
195 AG
* * *
28725954 TCCTACTGCCGCAAGCCTCAGTCTCG-TCTGATCTTAGACTAGGAATGAACTCAGTATGCTTAGA
1 TCCTACTGCCGCAACCCTCAGTC-CGATCTGATCATACACTAGGAATGAACTCAGTATGCTTAGA
* * **
28726018 CAT-GGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTC-AGTCGAC
65 C-TGGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAACCCG-C
* * ** * *
28726081 TGGAGACACAGAATGCGCAA-CCTAGGGACCGACTCGGTCCCCCCTACGTGCTATCGATCTTGCT
128 TGGAGACACAGAATGCACAAGCC-AGGGACCGACCCAATCCCCCCTACATGCTATCGATCCTGCT
28726145 ACCGCAACCC
Statistics
Matches: 158, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
196 28 0.18
197 127 0.80
198 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.21
Consensus pattern (196 bp):
TCCTACTGCCGCAACCCTCAGTCCGATCTGATCATACACTAGGAATGAACTCAGTATGCTTAGAC
TGGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAACCCGCTGG
AGACACAGAATGCACAAGCCAGGGACCGACCCAATCCCCCCTACATGCTATCGATCCTGCTGCTA
G
Found at i:28727082 original size:159 final size:159
Alignment explanation
Indices: 28726639--28727086 Score: 431
Period size: 162 Copynumber: 2.8 Consensus size: 159
28726629 CCACTGCCGG
* * * *
28726639 TCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * ** * *
28726704 CAACCCACGAAACGAGCGTGCAGGTGCTCAGCTGGCC-AGAAAGTCAGAATGCGCAAG-TGAGGG
66 CAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGA-AAAGGCAGAATGCGCAAGCT--GGG
* * * *
28726767 ACCGGCCTGGTCCCCCCCTCTGCGTGCTGTCGA
128 ACCGACCCGAT-CCCCCCTCTGCATGCTGTCGA
** * ** *
28726800 TCCTGCTGCTGCAACCCTCAGTCCGATCCT--ATCTTACAC-TGGGGAATGAACTCCGTATGCCT
1 TCCTGCTGCCACAACCCTCGGTCCGA--CTGGGGCTTAGACAT--GGAATGAACTCCGTATGCCT
* * * ** * * * * *
28726862 AAGTCAACCCACAAAATGAGTGTATGGGCACTGAGCTGACCGGAGAGGCATAATGCCCAAGCCTG
62 AAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGAAAAGGCAGAATGCGCAAG-CTG
* * *
28726927 GGATCGACCCGAT-CCCCCTCTGTATGCTGTCGG
126 GGACCGACCCGATCCCCCCTCTGCATGCTGTCGA
* *
28726960 TCTTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * *
28727025 CAGCCCACAAAACGAGCGTGCGGGCACTCAGCTAACCGAAAAGGCAGAATACGCAAGCTGGG
66 CAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGAAAAGGCAGAATGCGCAAGCTGGG
28727087 GATTGGCTCG
Statistics
Matches: 223, Mismatches: 54, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
158 7 0.03
159 67 0.30
160 46 0.21
161 27 0.12
162 73 0.33
163 2 0.01
164 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGAAAAGGCAGAATGCGCAAGCTGGGACC
GACCCGATCCCCCCTCTGCATGCTGTCGA
Found at i:28727089 original size:159 final size:160
Alignment explanation
Indices: 28726639--28727139 Score: 444
Period size: 159 Copynumber: 3.1 Consensus size: 160
28726629 CCACTGCCGG
* * * *
28726639 TCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * ** * *
28726704 CAACCCACGAAACGAGCGTGCAGGTGCTCAGCTGGCC-AGAAAGTCAGAATGCGCAAG-TGAGGG
66 CAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGA-AAAGGCAGAATGCGCAAGCTG-GGG
* * * * *
28726767 ACCGGCCTGGTCCCCCCCTCTGCGTGCTGTCGA
129 ATCGACCCGAT-CCCCCCTCTGCATGCTGTCGA
** * ** *
28726800 TCCTGCTGCTGCAACCCTCAGTCCGATCCT--ATCTTACAC-TGGGGAATGAACTCCGTATGCCT
1 TCCTGCTGCCACAACCCTCGGTCCGA--CTGGGGCTTAGACAT--GGAATGAACTCCGTATGCCT
* * * ** * * * * *
28726862 AAGTCAACCCACAAAATGAGTGTATGGGCACTGAGCTGACCGGAGAGGCATAATGCCCAAGCCT-
62 AAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGAAAAGGCAGAATGCGCAAG-CTG
* *
28726926 GGGATCGACCCGAT-CCCCCTCTGTATGCTGTCGG
126 GGGATCGACCCGATCCCCCCTCTGCATGCTGTCGA
* *
28726960 TCTTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * *
28727025 CAGCCCACAAAACGAGCGTGCGGGCACTCAGCTAACCGAAAAGGCAGAATACGCAAGCTGGGGAT
66 CAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGAAAAGGCAGAATGCGCAAGCTGGGGAT
* * * * *
28727090 TGGCTCGGT--CCCCTCTGCGTGCTGTCGA
131 CGACCCGATCCCCCCTCTGCATGCTGTCGA
* * * *
28727118 CCCTACTGTCGCAACCCTCGGT
1 TCCTGCTGCCACAACCCTCGGT
28727140 TCGGTCCAAT
Statistics
Matches: 263, Mismatches: 66, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
158 37 0.14
159 77 0.29
160 46 0.17
161 27 0.10
162 73 0.28
163 2 0.01
164 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (160 bp):
TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGAAAAGGCAGAATGCGCAAGCTGGGGAT
CGACCCGATCCCCCCTCTGCATGCTGTCGA
Found at i:28727179 original size:26 final size:26
Alignment explanation
Indices: 28727150--28727202 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28727140 TCGGTCCAAT
*
28727150 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28727176 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28727202 C
1 C
28727203 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28728257 original size:25 final size:26
Alignment explanation
Indices: 28728211--28728262 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
28728201 CTGGTTCGAT
28728211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28728237 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28728262 C
1 C
28728263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28728928 original size:26 final size:26
Alignment explanation
Indices: 28728892--28728944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28728882 CCGGTCCGAT
*
28728892 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28728918 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28728944 C
1 C
28728945 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28729233 original size:171 final size:171
Alignment explanation
Indices: 28728930--28729238 Score: 374
Period size: 171 Copynumber: 1.8 Consensus size: 171
28728920 TAGATTGGGG
* * **
28728930 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCTCTTAGCTGGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCGAAGAGG
* * * ** ** * *
28728995 CATAATGCGCAAGCTGGGGATCGTTCCAGTCCCCCTCTGCGTGCTGCTGATTCCGCTGCCAGTCC
66 CAGAATACGCAAGCTAGGGATCGGCCCAGTCCCCCTCAACATGCTGCTGATTCCACTGCCAGTCC
28729060 TGCTGCCATAACCCTCGATCCGGCTGGGGCTTAGACATGGA
131 TGCTGCCATAACCCTCGATCCGGCTGGGGCTTAGACATGGA
* *
28729101 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGG-TGCTCAGCCAGCCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCT-CTCAGCCAGCCGAAGAG
* * * **
28729165 GTAGAATACGCAAGTTAGGGATCGGCCCGGT-CCCCTCCAACATGCTG-TCGA-TCCTACTGCTG
65 GCAGAATACGCAAGCTAGGGATCGGCCCAGTCCCCCT-CAACATGCTGCT-GATTCC-ACTGCCA
28729227 GTCCTGCTGCCA
127 GTCCTGCTGCCA
28729239 CAATCCTCAA
Statistics
Matches: 114, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
170 10 0.09
171 104 0.91
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCTCAGCCAGCCGAAGAGG
CAGAATACGCAAGCTAGGGATCGGCCCAGTCCCCCTCAACATGCTGCTGATTCCACTGCCAGTCC
TGCTGCCATAACCCTCGATCCGGCTGGGGCTTAGACATGGA
Found at i:28730499 original size:26 final size:26
Alignment explanation
Indices: 28730461--28730513 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28730451 GGCTCAAACT
28730461 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28730487 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
28730513 C
1 C
28730514 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28730835 original size:26 final size:26
Alignment explanation
Indices: 28730784--28730836 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28730774 CCGATCCTAT
*
28730784 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28730810 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28730836 C
1 C
28730837 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28731542 original size:26 final size:26
Alignment explanation
Indices: 28731504--28731556 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28731494 GGCTCAAACT
28731504 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28731530 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
28731556 C
1 C
28731557 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28731883 original size:26 final size:26
Alignment explanation
Indices: 28731847--28731899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28731837 CTAGTTTGAT
*
28731847 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28731873 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28731899 C
1 C
28731900 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28732081 original size:26 final size:26
Alignment explanation
Indices: 28732043--28732095 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28732033 CTGGTCTGAT
28732043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28732069 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28732095 C
1 C
28732096 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28732915 original size:26 final size:26
Alignment explanation
Indices: 28732877--28732929 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28732867 TTGGTCTGAT
*
28732877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28732903 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
28732929 C
1 C
28732930 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28734114 original size:26 final size:26
Alignment explanation
Indices: 28734077--28734128 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28734067 ACTCAAACTA
* *
28734077 TTAGACTAGGAATGAAGTCTGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
28734103 TTAGAC-ATGGAATGAACTCCGTATGC
1 TTAGACTA-GGAATGAACTCCGTATGC
28734129 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:28734459 original size:26 final size:26
Alignment explanation
Indices: 28734419--28734470 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
28734409 CAGTTTGATG
* *
28734419 TTAGATTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
28734445 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
28734471 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:28735040 original size:26 final size:26
Alignment explanation
Indices: 28735004--28735056 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28734994 CCGGTCCGAT
*
28735004 CTTAGATTGGGAATAAACTCCATATG
1 CTTAAATTGGGAATAAACTCCATATG
* * *
28735030 CTTAAATTGGGGATGAACTCCGTATG
1 CTTAAATTGGGAATAAACTCCATATG
28735056 C
1 C
28735057 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAATTGGGAATAAACTCCATATG
Found at i:28735241 original size:26 final size:26
Alignment explanation
Indices: 28735212--28735264 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28735202 CCGGTCCGAT
28735212 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28735238 CTTAGACATGGAATGAACTCGGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28735264 C
1 C
28735265 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28735875 original size:26 final size:26
Alignment explanation
Indices: 28735839--28735916 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
28735829 CGATCCAATT
*
28735839 TTAGACTTGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
28735865 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
*
28735891 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
28735917 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCTGTATGC
Found at i:28736188 original size:158 final size:158
Alignment explanation
Indices: 28735890--28736232 Score: 422
Period size: 158 Copynumber: 2.2 Consensus size: 158
28735880 ACTCTGTATG
*
28735890 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCAGGTTCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCAGGTGCTCAG
* * * * * * * *
28735954 CCAATTGGAGAGGCAGAATGCGCAAGGCGGGGATCGGGTCGGTCCCCCCTGCGTGATGTCGATCC
65 CCAATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTACGTGATGCCGATCC
* * *
28736019 TGCTACCGCAACCCTC-ATTCTGATCTGAT
130 TGCTACCGCAACCCTCGATCCGGATC-AAT
* * * * * *
28736048 CTTTGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA-TAAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACT-AAACGAGCGTGCAGGTGCTCAG
* *
28736112 CCAATCGGAGAGGCAAAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCC
65 CCAATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTACGTGATGCCGATCC
* * *
28736177 TGCTGCTGCAACCCTCGATCCGGTTCAAT
130 TGCTACCGCAACCCTCGATCCGGATCAAT
*
28736206 GTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
28736233 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 2 0.01
158 148 0.95
159 6 0.04
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCAGGTGCTCAGC
CAATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTACGTGATGCCGATCCT
GCTACCGCAACCCTCGATCCGGATCAAT
Found at i:28736236 original size:26 final size:26
Alignment explanation
Indices: 28736207--28736310 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
28736197 CGGTTCAATG
*
28736207 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
28736233 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
* * *
28736259 TTAGACTAGGGATGAACACCGTCTGC
1 TTAGACTGGGGATGAACTCCGTATGC
28736285 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
28736311 CTAAGTCAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTCCGTATGC
Found at i:28736787 original size:196 final size:197
Alignment explanation
Indices: 28736464--28736824 Score: 464
Period size: 196 Copynumber: 1.8 Consensus size: 197
28736454 GGTCCGATCC
28736464 GATCTTAGACTGGGAATGAACACCATATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACACCATATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAA
* * * * * *
28736529 CCCATGAAATGAGCGTGCGGGCACTCAGCTGATCGAAGAGGCAAAATGCATAAGCTGGGGATCAG
66 CCCATGAAACGAGCGTACAGGCACTCAGCTGACCGAAGAGGCAAAATGCACAAGCTGGGGATCAA
* * *
28736594 CCCGGTCCCCTC-TGCATGCTGTTGATCCTACTGCTGGTCCTGCTGCCTCAACTCGCGATCCAGT
131 CCCGATCCCCCCATGCATGCTGTCGATCCTACTGCTGGTCCTGCTGCCTCAACTCGCGATCCAGT
28736658 CT
196 CT
* ** *
28736660 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATTAA-TTTCGTATGCCTAAGCCA
1 GATCTTAGACTGGGAATGAACACCATATGCTTAGACATGGAATGAACTTT-GTATGCCTAAGCCA
* * * *
28736724 ACCCATGAAACGAAG-GTACAGGCGCTTAG-TCGACCGGAA-AGGCAGAATGCGCAAG-TCGGGG
65 ACCCATGAAACG-AGCGTACAGGCACTCAGCT-GACC-GAAGAGGCAAAATGCACAAGCT-GGGG
* *
28736785 ATCAACCCGATCCCCCCATGCGTGTTGTCGATCCTACTGC
126 ATCAACCCGATCCCCCCATGCATGCTGTCGATCCTACTGC
28736825 CGTAACCCTC
Statistics
Matches: 140, Mismatches: 19, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
195 5 0.04
196 111 0.79
197 24 0.17
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (197 bp):
GATCTTAGACTGGGAATGAACACCATATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAA
CCCATGAAACGAGCGTACAGGCACTCAGCTGACCGAAGAGGCAAAATGCACAAGCTGGGGATCAA
CCCGATCCCCCCATGCATGCTGTCGATCCTACTGCTGGTCCTGCTGCCTCAACTCGCGATCCAGT
CT
Found at i:28736984 original size:159 final size:157
Alignment explanation
Indices: 28736710--28737191 Score: 453
Period size: 159 Copynumber: 3.0 Consensus size: 157
28736700 AATTAATTTC
* * * * * * * *
28736710 GTATGCCTAAGCCAACCCATGAAACGAAG-GTACAGGCGCTTAGTCGACCGGAAAGGCAGAATGC
1 GTATGCCTAAGCCAACACATAAAACG-AGCGTACGGGCACTCAGTCGGCCAGAGAGGCAGAATGC
* * * * *
28736774 GCAAGTCGGGGATCAACCCGATCCCCCCATGCGTGTTGTCGATCCTACTGCCGTAACCCTCGGTC
65 GCAAGTCGGGGATCGACCCGAT-CCCCCATGTGTGCTATCGATCCTACTGCCGCAACCCTCGGTC
28736839 TAGTCTAATCTTAGACTTGGAATGAACTCT
129 -AGTCTAATCTTAGACTTGGAATGAACTCT
* * * * * * * *
28736869 GTATGCCTAAGTCAACCCATAAAATGAGCTTACGGGCACTGAGTTGGTCAGAGAGGCATAATGCG
1 GTATGCCTAAGCCAACACATAAAACGAGCGTACGGGCACTCAGTCGGCCAGAGAGGCAGAATGCG
* * ** * *
28736934 CAAGTCGGGGATCGACCCGATCCCCCTATGTGTGCTACCCATCCCGCTGCCACAACCCTCGGTCC
66 CAAGTCGGGGATCGACCCGATCCCCC-ATGTGTGCTATCGATCCTACTGCCGCAACCCTCGGTCA
* *** * *
28736999 GACTGGGGCTTAGACATGGAATGAACTCC
130 GTCT-AATCTTAGACTTGGAATGAACTCT
* * * ** * * *
28737028 CTATGCCTAAGCCAACACATGAAACGGGCGTGTGGGCGCTCAGTCGGCCGGAGAGGCAGAATGTG
1 GTATGCCTAAGCCAACACATAAAACGAGCGTACGGGCACTCAGTCGGCCAGAGAGGCAGAATGCG
* * * * * *
28737093 CAAGCCGAGGATCGACCCGGTCCCCCCTGTGTGCTATTGATCCTACTGTCGCAACCCTCGGTCCA
66 CAAGTCGGGGATCGACCCGATCCCCCATGTGTGCTATCGATCCTACTGCCGCAACCCTCGGT-CA
* * *
28737158 ATCCAATCTTAGACTAGGAATGAACTCT
130 GTCTAATCTTAGACTTGGAATGAACTCT
28737186 GTATGC
1 GTATGC
28737192 TTAGACTGGG
Statistics
Matches: 251, Mismatches: 68, Indels: 9
0.77 0.21 0.03
Matches are distributed among these distances:
158 61 0.24
159 190 0.76
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
GTATGCCTAAGCCAACACATAAAACGAGCGTACGGGCACTCAGTCGGCCAGAGAGGCAGAATGCG
CAAGTCGGGGATCGACCCGATCCCCCATGTGTGCTATCGATCCTACTGCCGCAACCCTCGGTCAG
TCTAATCTTAGACTTGGAATGAACTCT
Found at i:28737206 original size:26 final size:26
Alignment explanation
Indices: 28737165--28737217 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28737155 CCAATCCAAT
*
28737165 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
28737191 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28737217 C
1 C
28737218 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28738373 original size:159 final size:157
Alignment explanation
Indices: 28737913--28738416 Score: 430
Period size: 159 Copynumber: 3.2 Consensus size: 157
28737903 AACTCCGTAT
* * *
28737913 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCAC-ACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG-G-ACTGCGGGCGCTCA
* * ** *
28737977 GTCGGCCGGAGAGG-TAAAATGCGCAAGCCAAGGATCGGCCTGATCCCCCCTAAGTGCTATCGAT
64 GTCGGCCGGAGAGGCAAAAATGCG-AAGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGAT
* * * *
28738041 CTTGCTGCCGCAACCCTCGGTCTGGTCTGA
128 CCTGCTGCCGCAACCCTCGATCTCGACTGA
* * * * * *
28738071 TCTTCGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAAT-GAGCATGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGA-C-TGCGGGCGCTC
* ** * * * * * *
28738134 AGTCGACCAAAGAGGCATAATATGC-AAGCCGAGGATCAGCCCGGTCTCCCTCTGCGTGCTGCCG
63 AGTCGGCCGGAGAGGCA-AAAATGCGAAGCCGAGGATCGGCCTGATC-CCCCCTGCGTGCTGTCG
* ** * *
28738198 GTCCCACTGCCACAACCCTCGAT-TCGACTGGG
126 ATCCTGCTGCCGCAACCCTCGATCTCGACT-GA
* * * *
28738230 GCTTGGACATGGAATGAACTCCCTATGCCTGAGCCAACCCACGAAATGGACGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGAC-TGCGGGCGCTCAG
* * *
28738295 TCGGCCGGAGAGGCAAAAATGCGTAAGCCGGGGATTGGCCTAATCCCCCCTGCGTGCTGTCGATC
65 TCGGCCGGAGAGGCAAAAATGCG-AAGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATC
* * * *
28738360 CTGCTGTCGCAACCCTTGGTC-CGGTCTGA
129 CTGCTGCCGCAACCCTCGATCTC-GACTGA
* *
28738389 TCTTACAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
28738417 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 66, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
155 1 0.00
156 2 0.01
157 1 0.00
158 86 0.32
159 148 0.56
160 27 0.10
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGACTGCGGGCGCTCAGT
CGGCCGGAGAGGCAAAAATGCGAAGCCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGATCTCGACTGA
Found at i:28738419 original size:26 final size:26
Alignment explanation
Indices: 28738390--28738442 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28738380 CCGGTCTGAT
*
28738390 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
* * *
28738416 CTTAGACTGGGGATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
28738442 C
1 C
28738443 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:28744978 original size:26 final size:26
Alignment explanation
Indices: 28744942--28744994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28744932 CCGGTCTGAT
*
28744942 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28744968 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28744994 C
1 C
28744995 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28745688 original size:26 final size:26
Alignment explanation
Indices: 28745650--28745702 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28745640 GGCTCAAAAT
28745650 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28745676 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28745702 C
1 C
28745703 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28746378 original size:26 final size:26
Alignment explanation
Indices: 28746349--28746401 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28746339 CCGGTCTGAT
28746349 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28746375 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28746401 C
1 C
28746402 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28746552 original size:183 final size:184
Alignment explanation
Indices: 28746190--28746558 Score: 434
Period size: 184 Copynumber: 2.0 Consensus size: 184
28746180 TCCGGTTGGG
* * ** * *
28746190 GCTTAGACATGGAACGAACTCTGTATGCCTAAGCTAACCCATGAAACGAGCGTATGGGTGCTCAA
1 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTATGGGCGCTCAA
* * * ***
28746255 CCGGTCGGAGAGGTAGAATAAGCAAGCCGAGGATCAACCCGATCCCCCTTGTGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATAAGCAAGCCGAGGATCAACCCAATCCCCCTTACATGCTGTCGATCC
** **
28746320 TACTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCAGTCCGGTCCCATCTTAGACTGGGAATGAACTCCGTAT
* * * *
28746374 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGTGGGCGCTTAG
1 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTATGGGCGCTCAA
** * * * ****
28746439 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATTGGGCCAATCCCCC-TACATGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATAAGCAAGCCGAGGATCAACCCAATCCCCCTTACATGCTGTCGATCC
* * * *
28746503 TGCTACCGTAACCCTCGGTCTGGTCCCATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCAGTCCGGTCCCATCTTAGACTGGGAATGAACTCCGTAT
28746557 GC
1 GC
28746559 CTAAGTCAAC
Statistics
Matches: 152, Mismatches: 33, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
183 61 0.40
184 91 0.60
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTATGGGCGCTCAA
CCGATCGGAGAGGCAGAATAAGCAAGCCGAGGATCAACCCAATCCCCCTTACATGCTGTCGATCC
TACTACCGCAACCCTCAGTCCGGTCCCATCTTAGACTGGGAATGAACTCCGTAT
Found at i:28746720 original size:158 final size:158
Alignment explanation
Indices: 28746374--28746973 Score: 625
Period size: 159 Copynumber: 3.8 Consensus size: 158
28746364 AACTCCGTAT
* * * * * *
28746374 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * * * * * * *
28746439 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATTGGGCCAATCCCC-CTACATGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTGCGTGCTGTCGGTCC
* * ** * * ***
28746503 TGCTACCGTAACCCTCGGTCTG-GTCCCA
131 CGCTGCCACAACCCTCGGTCCGACT-GGG
* * * * * *
28746531 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
28746595 ACCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCGGTGTGCTGTCGGTC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTGCGTGCTGTCGGTC
28746660 CCGCTGCCACAACCCTCGGTCCGACTGGG
130 CCGCTGCCACAACCCTCGGTCCGACTGGG
*
28746689 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
28746754 TCGGCCGAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTTTGCGTGCT-ACTGGT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCTCTGCGTGCTGTC-GGT
*
28746818 CCCGCTGCCACAACCCTCAGTCCGACTGGG
129 CCCGCTGCCACAACCCTCGGTCCGACTGGG
* * *
28746848 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
28746913 CTGGCCGGAGTA-GCAGAATGCGTAAGACGGGGATCAGCCCAGTCCCCCCTGCATGCTGTCG
66 CCGGCCGGAG-AGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTGCGTGCTGTCG
28746974 ATCCTTCTAC
Statistics
Matches: 369, Mismatches: 66, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
156 1 0.00
157 93 0.25
158 134 0.36
159 140 0.38
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTGCGTGCTGTCGGTCC
CGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:28747036 original size:26 final size:26
Alignment explanation
Indices: 28747007--28747056 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
28746997 CCGGTCTGAT
*
28747007 CTTAGACTGTGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
* *
28747033 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
28747057 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:28748342 original size:158 final size:160
Alignment explanation
Indices: 28747902--28748503 Score: 547
Period size: 158 Copynumber: 3.7 Consensus size: 160
28747892 CCTGCTGCCA
* * * * * *
28747902 CAACCCTCGATCCGA-CTAGAGCTTTGACAT-GGAATGAACTTTGTATGCCTAAGCGAACCCACA
1 CAACCCTCGATCCGATC-CGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACG
** * * * * * * *
28747965 AAATGAGCGTGCGGGCACTCAGTCGGCCGAAGAGGTAGAATACGCAAGCC-GAGGATCGACCCGA
64 AAATGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGAAGACCGACCCGA
28748029 TCCCCCCTGCGTGCTGCCAATCCTGCTGTTGGTCCTACTACCG
129 T--CCCC--C-T-CTG-C-A---TGCTGTTGGTCCTACTACCG
* ** * * * *
28748072 CAACCCTTGGCCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACACACGAA
1 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
* * * * * *
28748137 ACGAGCGTGCGGGTGCTCA-ACTGACCGGAGAGGCAGAATGCGCAAGCCAG-GGACCGGCGCGAT
66 ATGAGCGTGCGGGTGCTCAGCCAG-CCGGAGAGGCAGAATGCGCAAGCCAGAAGACCGACCCGAT
*
28748200 CCCCCT-TGCATGCTGTTGATCCTACTACCG
130 CCCCCTCTGCATGCTGTTGGTCCTACTACCG
28748230 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
** * * * * *
28748295 ATGAGCGTGCGGGCACTGAGCCAGCCGGAGAGGCATAATGCGTAAGCC-GAAGATCGACCCGGTC
66 ATGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGAAGACCGACCCGATC
* * * * *
28748359 CCCCTCTGCGTGCTGTCGGTCCGACTGCCA
131 CCCCTCTGCATGCTGTTGGTCCTACTACCG
* * ** * *
28748389 CAACCCTCGATCC-AGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CAACCCTCGATCCGATC-CGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACG
* **
28748452 AAATGGGCGTGCGGGTGCTCAGCCAGCCGGAGACACAGAATGCGCAAGCCAG
64 AAATGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAG
28748504 TGATCGACCT
Statistics
Matches: 360, Mismatches: 62, Indels: 30
0.80 0.14 0.07
Matches are distributed among these distances:
157 1 0.00
158 130 0.36
159 114 0.32
160 2 0.01
161 1 0.00
162 1 0.00
163 2 0.01
165 1 0.00
166 1 0.00
168 4 0.01
169 3 0.01
170 98 0.27
171 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (160 bp):
CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
ATGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGAAGACCGACCCGATC
CCCCTCTGCATGCTGTTGGTCCTACTACCG
Found at i:28748445 original size:159 final size:158
Alignment explanation
Indices: 28748093--28748534 Score: 505
Period size: 159 Copynumber: 2.8 Consensus size: 158
28748083 CCGGTCTGAT
* * * *
28748093 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGTGCTCA-A
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * * *
28748157 CTGACCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCGCGATCCCCCTTGCATGCTGTTGATCC
66 CAG-CCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
* * *
28748222 TACTACCGCAACCCTCGATCCGATCCGAT
130 GACTACCACAACCCTCGATCCGATCCGAG
** *
28748251 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * *
28748316 CAGCCGGAGAGGCATAATGCGTAAGCC-GAAGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTC
66 CAGCCGGAGAGGCAGAATGCGCAAGCCAG-AGATCGACCCGGTCCCCCT-TGCGTGCTGTCGATC
* * * *
28748380 CGACTGCCACAACCCTCGATCC-AGCTGGGG
129 CGACTACCACAACCCTCGATCCGATC-CGAG
* * *
28748410 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
** * ** *
28748474 CCAGCCGGAGACACAGAATGCGCAAGCCAGTGATCGACCTAGTCCCCTTTGCGTGCTGTCG
65 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGGTCCCCCTTGCGTGCTGTCG
28748535 CAAACCTCGG
Statistics
Matches: 239, Mismatches: 39, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
157 1 0.00
158 107 0.45
159 129 0.54
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCG
ACTACCACAACCCTCGATCCGATCCGAG
Found at i:28748585 original size:26 final size:26
Alignment explanation
Indices: 28748556--28748608 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28748546 CCGATCTGAT
28748556 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28748582 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28748608 C
1 C
28748609 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28748955 original size:184 final size:185
Alignment explanation
Indices: 28748765--28749178 Score: 449
Period size: 184 Copynumber: 2.2 Consensus size: 185
28748755 TCCGGCAGGG
*
28748765 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAA-GAGCGTGTGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAACGAGCGTGCGGGCACTCA
* * * * * * **
28748829 GCCAGTCGGTGAGGCAGAATGCGCAAGCTGAGGATCGACCCCGT-CCCTCCTGTGTGCTGCCGAT
66 GCCAGCCGGAGAGGCAGAATGCGCAAACCGAGAACCGACCCCGTCCCCT-CTGCATGCTGCCGAT
* * * **
28748893 CCTACTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAAAGAACTCCATAT
130 CCTACTACCACAACCCTCAGTCCGATCCAATCTTAGACCAGGAAAGAACTCCATAT
** * *
28748949 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCAC-AAAACGAGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAACGAGCGTGCGGGCACTCA
* * * * ** * *
28749013 GTCGGCCGGAGAGGTAGAATGTGCAAACCGAGAACCGATGCGGTCCCCTCTGCATGCTGTCGATC
66 GCCAGCCGGAGAGGCAGAATGCGCAAACCGAGAACCGACCCCGTCCCCTCTGCATGCTGCCGATC
* * * * ** * *
28749078 CTCCTACCACAACCTTCAGTCTGATCCGATCTTAGACCAGGATTGAACTTCGTAT
131 CTACTACCACAACCCTCAGTCCGATCCAATCTTAGACCAGGAAAGAACTCCATAT
* * *
28749133 GATTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
28749179 CAAGTGTGCG
Statistics
Matches: 187, Mismatches: 39, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
183 5 0.03
184 175 0.94
185 7 0.04
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAACGAGCGTGCGGGCACTCA
GCCAGCCGGAGAGGCAGAATGCGCAAACCGAGAACCGACCCCGTCCCCTCTGCATGCTGCCGATC
CTACTACCACAACCCTCAGTCCGATCCAATCTTAGACCAGGAAAGAACTCCATAT
Found at i:28749505 original size:26 final size:26
Alignment explanation
Indices: 28749464--28749516 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28749454 CCGGTCCGAT
*
28749464 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28749490 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28749516 C
1 C
28749517 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28749841 original size:26 final size:26
Alignment explanation
Indices: 28749812--28749862 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
28749802 CTATCCGATC
28749812 TTAGAC-TGGGAATGAACTCCGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
28749838 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
28749863 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:28749855 original size:347 final size:347
Alignment explanation
Indices: 28748949--28749890 Score: 989
Period size: 356 Copynumber: 2.7 Consensus size: 347
28748939 AACTCCATAT
* * * *
28748949 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAG
* * * * * * * *
28749014 TCGGCCGGAGAGGTAGAATGTGCAAACCGAGAACCGATGC-GGTCCCCTCTGCATGCTG-TCGAT
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCGA-CCTGGTCCCCCCTGCGTGCTGCT-GAT
* * * ** * *
28749077 CCTCCTACCACAACCTTCAGT-CTGATCCGATCTTAGACCAGGATTGAACTTCGTATGATTAGAC
129 CCTACTACCACAACCCTCGGTCCT-ATCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGAC
* *
28749141 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGAGCGCTCAGTCGGTCGA
193 T-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGTCGA
* ** ** * * *
28749206 AGAGGCGATTGAAGAGGCATAATGCACAAGTCGGGGATCAGCCTGATCCCTTTCTGCATGCTATC
257 AAAACCGACCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATACCTCTCTGCATGCTATC
28749271 GATCCCACTGCCACAACCCGTGGTCCGACTGGG
322 GATCCCACTG------CCCG-GGTCCGACTGGG
* * * * * * * * * *
28749304 GATTAGACATGGAATGAACTCCCTATTCCTAACCCAACCCATAAAATGGGTGTGCCGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAG
* * * * *
28749369 CCGGCCGGAGAGGCA-AATTTATGCAAGCTGAGGATCGGCCTGATCCCCCCTGCGTGCTGCCGAT
66 CCGGCCGGAGAGGCAGAA--TGTGCAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCTGCTGAT
* * ** * *
28749433 CCTATTATCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
129 CCTACTACCACAACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGAC-
* * *
28749498 TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGTCGAA
193 TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGTCG-A
* * * *
28749563 AAAACCGGCCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTACCTCTCTGCGTGCTGTC
257 AAAACCGACCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATACCTCTCTGCATGCTATC
* * * *
28749628 GATCCCATTG-TC-GGTCTGGCTGGG
322 GATCCCACTGCCCGGGTCCGACTGGG
* * *
28749652 GCTTATACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAG
* * * *
28749717 CCGGCCAGAGAGGCAGAATGCGCAAGCC-AGGGATCGACCTGGTCCCCCCTACGTGCTGCTGGTC
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCGA-GGATCGACCTGGTCCCCCCTGCGTGCTGCTGATC
* ** * *
28749781 CTGCTACCGTAGCCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGTTTAGACAT
130 CTACTACCACAACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGAC-T
* * * *
28749846 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC
194 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
28749891 AGGCACTCAA
Statistics
Matches: 480, Mismatches: 98, Indels: 26
0.79 0.16 0.04
Matches are distributed among these distances:
346 1 0.00
347 130 0.27
348 76 0.16
349 2 0.00
350 1 0.00
354 2 0.00
355 66 0.14
356 137 0.29
357 65 0.14
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (347 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAG
CCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCTGCTGATCC
TACTACCACAACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGTCGAAAAA
CCGACCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATACCTCTCTGCATGCTATCGATC
CCACTGCCCGGGTCCGACTGGG
Found at i:28749911 original size:347 final size:347
Alignment explanation
Indices: 28748949--28749899 Score: 982
Period size: 347 Copynumber: 2.7 Consensus size: 347
28748939 AACTCCATAT
* * * *
28748949 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAG
* * * * * * * *
28749014 TCGGCCGGAGAGGTAGAATGTGCAAACCGAGAACCGATGC-GGTCCCCTCTGCATGCTG-TCGAT
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCGA-CCTGGTCCCCCCTGCGTGCTGCT-GAT
* * * ** * *
28749077 CCTCCTACCACAACCTTCAGT-CTGATCCGATCTTAGACCAGGATTGAACTTCGTATGATTAGAC
129 CCTACTACCACAACCCTCGGTCCT-ATCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGAC
* *
28749141 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGAGCGCTCAGTCGGTCG-
193 T-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GCGCTCAGTCGGTCGA
* ** ** * * *
28749205 AAGAGGCGATTGAAGAGGCATAATGCACAAGTCGGGGATCAGCCTGATCCCTTTCTGCATGCTAT
256 AAAAACCGACCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATACCTCTCTGCATGCTAT
28749270 CGATCCCACTGCCACAACCCGTGGTCCGACTGGG
321 CGATCCCACTG------CCCG-GGTCCGACTGGG
* * * * * * * * * *
28749304 GATTAGACATGGAATGAACTCCCTATTCCTAACCCAACCCATAAAATGGGTGTGCCGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAG
* * * * *
28749369 CCGGCCGGAGAGGCA-AATTTATGCAAGCTGAGGATCGGCCTGATCCCCCCTGCGTGCTGCCGAT
66 CCGGCCGGAGAGGCAGAA--TGTGCAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCTGCTGAT
* * ** * *
28749433 CCTATTATCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
129 CCTACTACCACAACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGAC-
* *
28749498 TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGTCGAA
193 TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGCGCTCAGTCGGTCGAA
* * * *
28749563 AAAACCGGCCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTACCTCTCTGCGTGCTGTC
257 AAAACCGACCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATACCTCTCTGCATGCTATC
* * * *
28749628 GATCCCATTG-TC-GGTCTGGCTGGG
322 GATCCCACTGCCCGGGTCCGACTGGG
* * *
28749652 GCTTATACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAG
* * * *
28749717 CCGGCCAGAGAGGCAGAATGCGCAAGCC-AGGGATCGACCTGGTCCCCCCTACGTGCTGCTGGTC
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCGA-GGATCGACCTGGTCCCCCCTGCGTGCTGCTGATC
* ** * *
28749781 CTGCTACCGTAGCCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGTTTAGACAT
130 CTACTACCACAACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGAC-T
* * * * *
28749846 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA
194 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCA
28749900 ACCGATCGAA
Statistics
Matches: 486, Mismatches: 99, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
346 1 0.00
347 136 0.28
348 76 0.16
349 2 0.00
350 1 0.00
354 2 0.00
355 66 0.14
356 136 0.28
357 66 0.14
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (347 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAG
CCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCTGCTGATCC
TACTACCACAACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAGTCGGTCGAAAAAA
CCGACCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATACCTCTCTGCATGCTATCGATC
CCACTGCCCGGGTCCGACTGGG
Found at i:28749983 original size:184 final size:184
Alignment explanation
Indices: 28749658--28750020 Score: 464
Period size: 184 Copynumber: 2.0 Consensus size: 184
28749648 TGGGGCTTAT
* *
28749658 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGGCC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAACCGGCC
* * * * * *
28749723 AGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTACGTGCTGCTGGTCCTGCTAC
66 AGAAAGGAAGAATACGCAAGCCAGGGACCGACCTGATCCCCCCTACGTGCTGCTGATCCTGCTAC
* *
28749788 CGTAGCCCTCGGTCCT-ATCCGATCTTAGACTGGGAATGAACTCCGTATGTTTAG
131 CGTAACCCTCGGT-CTAATCCGATCTTAGACTGGGAATGAACTCCATATGTTTAG
* **
28749842 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAACCGATC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAACCGGCC
* * * * * *
28749907 -GAAAAGGAAGAATACGTAAGTCGGGGACCGA-CTCGATCCCCCCTGCGTGCT-ATCGATCTTGC
66 AG-AAAGGAAGAATACGCAAGCCAGGGACCGACCT-GATCCCCCCTACGTGCTGCT-GATCCTGC
* * *
28749969 TGCGGTAACCCTCGGTCTAATCTGATCTTAGACTGGGAATGAACTCCATATG
128 TACCGTAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCCATATG
28750021 CCTAAGTCAA
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
183 6 0.04
184 147 0.96
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAACCGGCC
AGAAAGGAAGAATACGCAAGCCAGGGACCGACCTGATCCCCCCTACGTGCTGCTGATCCTGCTAC
CGTAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCCATATGTTTAG
Found at i:28750195 original size:159 final size:158
Alignment explanation
Indices: 28749838--28750331 Score: 512
Period size: 158 Copynumber: 3.1 Consensus size: 158
28749828 CTCCGTATGT
* * * *
28749838 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAACC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
* * * * * *
28749903 GATCGAAAAGGAAGAATACGTAAGTCGGGGACCGACTCGATCCCCCCTGCGTGCTATCGATCTTG
66 GATCGGAAAGGCAGAATACGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTGCTACCGATCCTG
*** * * *
28749968 CTGCGGTAACCCTCGGTCTAATCTGATC
131 CTGCCACAACCCTCAGTCCAATCTGAGC
* * * * *
28749996 TTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCACTGAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * *
28750060 CGATCGGAAAGGCATAATACGCAAGTCGAGGATCGACCCGATCCCCCTCTGTGTGCTACC-AGTC
65 CGATCGGAAAGGCAGAATACGCAAGTCGGGGATCGACTCGATCCCCC-CTGCGTGCTACCGA-TC
* * *
28750124 CTGTTGCCACAACCCTCAGTCCCA-CTGGGGC
128 CTGCTGCCACAACCCTCAGTCCAATCT-GAGC
* * * *
28750155 TTAGACATGGAATGAACTTCC-TATGCCTAAGCCAAACCACGGAACGGGCGTGCGGGCGCTCAAC
1 TTAGACATGGAATGAAC-TCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * **
28750219 CGGTCGGAGAGGCAGAATACGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCCT
65 CGATCGGAAAGGCAGAATACGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTGCTACCGATCCT
* ** * * *
28750284 GCTGTCGTAACCCTCGGTCCATTCTGATC
130 GCTGCCACAACCCTCAGTCCAATCTGAGC
28750313 TTAGAC-TGGGAATGAACTC
1 TTAGACAT-GGAATGAACTC
28750332 TGTATGCTTA
Statistics
Matches: 272, Mismatches: 55, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.01
158 141 0.52
159 123 0.45
160 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
GATCGGAAAGGCAGAATACGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTGCTACCGATCCTG
CTGCCACAACCCTCAGTCCAATCTGAGC
Found at i:28750341 original size:26 final size:26
Alignment explanation
Indices: 28750312--28750364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28750302 CCATTCTGAT
*
28750312 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
*
28750338 CTTAGACTGGGGATGAACACTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
28750364 C
1 C
28750365 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACTGTATG
Found at i:28751417 original size:26 final size:26
Alignment explanation
Indices: 28751381--28751433 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28751371 CTGGTTAGAT
28751381 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28751407 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28751433 C
1 C
28751434 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28753143 original size:159 final size:157
Alignment explanation
Indices: 28752859--28753281 Score: 374
Period size: 159 Copynumber: 2.7 Consensus size: 157
28752849 CCGGAGAGGT
* * * *
28752859 AGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTTATCCTGCTGTCACAACCCT
1 AGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTATCCTACTGCCACAACCCT
* * * * *
28752924 CAGTCTGGTTCGATCTTACACTAGGAATGAACTCCGTATGCATAAGTCAAATCACGAAAC-GAGC
66 CAGTCCGATTCGAGCTTACACTAGGAATGAACTCCCTATGCATAAGCCAAATCACGAAACGGA-C
* *
28752988 ATGCGTGC-ACTGAACCGACCGAAGAGGC
130 ATGCG-GCTACTCAACCGACCGAAGAGAC
* * *
28753016 ATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCTGT-TCC-ACTGCCACAA
1 AGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTG--T-TATCCTACTGCCACAA
* * * * * *
28753079 TCCTCAGTCCGATTGGAGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCC-AACCTAGGAAA
62 CCCTCAGTCCGATTCGAGCTTACACTA-GGAATGAACTCCCTATGCATAAGCCAAATC-ACGAAA
* * * * *
28753142 CGGACATGTGGCTGCTCAGCCGACCGGAGAGAT
125 CGGACATGCGGCTACTCAACCGACCGAAGAGAC
* * * * * **
28753175 AGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCC
1 AGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGT-TATCCTACTGCCACAACCC
* * * * *
28753240 TCAGTCCAATCCGATCTTAGACT-GGAAATGAACTCCATATGC
65 TCAGTCCGATTCGAGCTTACACTAGG-AATGAACTCCCTATGC
28753282 TTAGACTGGG
Statistics
Matches: 212, Mismatches: 42, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 35 0.17
158 65 0.31
159 104 0.49
160 6 0.03
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (157 bp):
AGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTATCCTACTGCCACAACCCT
CAGTCCGATTCGAGCTTACACTAGGAATGAACTCCCTATGCATAAGCCAAATCACGAAACGGACA
TGCGGCTACTCAACCGACCGAAGAGAC
Found at i:28753296 original size:26 final size:26
Alignment explanation
Indices: 28753255--28753307 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28753245 CCAATCCGAT
*
28753255 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACACCATATG
** *
28753281 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGAAATGAACACCATATG
28753307 C
1 C
28753308 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCATATG
Found at i:28753997 original size:26 final size:26
Alignment explanation
Indices: 28753947--28754005 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
28753937 CTCGGTCCGG
*
28753947 TCCG-ATG-TTAGACTGGGAATCAAC
1 TCCGTATGCTTAGACTGGGAATAAAC
* *
28753971 TTCGTATGCTTAGACTGGGGATAAAC
1 TCCGTATGCTTAGACTGGGAATAAAC
28753997 TCCGTATGC
1 TCCGTATGC
28754006 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 23 0.79
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATAAAC
Found at i:28754302 original size:698 final size:698
Alignment explanation
Indices: 28752936--28754360 Score: 1630
Period size: 698 Copynumber: 2.0 Consensus size: 698
28752926 GTCTGGTTCG
* * * *
28752936 ATCTTACACTAGGAATGAACTCCGTATGCATAAGTCAAATCACGAAACGAGCATGCGTGCACTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAACCACGAAACGAGCATGCGGGCACTGA
* * * * * * * **
28753001 ACCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCTGT
66 ACCGACCGAAGAGGCATAATACACAAGACGAGGATCGACCCAGTCCACCTCTACGTGCTGCAGGT
** *
28753066 TCCACTGCCACAATCCTCAGTCCGATTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
131 TCCACTGCCACAATCCTCAGTCCGATAAGAGCTTAAACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * *
28753131 AACCTAGGAAACGGACATGTGGCTGCTCAGCCGACCGGAGAGATAGAATGCGCAAGCTGGGGATC
196 AACCCACGAAACGGACATGGGGCTGCTCAACCGACCGGAGAGACAGAATGCGCAAGCCGGCGATC
* *
28753196 GACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCCAATCCGATCTTAGA
261 GACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACACTCAGTCCAATCCGATCTTAGA
* * *
28753261 CTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACACCGTATGCCTAAGTCAACCAATGAAA
326 CTGGAAATCAACTCCATATGCTTAGACTGGGGATAAACACCGTATGCCTAAGTCAACCAACGAAA
* * * * * * *
28753326 TGAGCGTGCGAGTGCTCAGCCGGTTGGAGAGGCCGGCCGGAGAGGCATAATGTGCAAGTCGGGGA
391 TGAGCGTGCGAGCGCTCAGACGGTTGGAGAGGCCGACCAGAGAGGCATAATGCGCAAGCCGCGGA
* ** * * *
28753391 TCAGCTCGATCCCTTTCTACATGCTACCAATCCCGCTGTCGGTCCTGCTACCACAACTCTCGATC
456 TCAGCCCGATCCCCCTCGACATGCTACCAATCCCGCTGCCGGTCCTACTACCACAACTCTCGATC
* * * *
28753456 TAGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGG
521 TAGCTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG
* ** * * * *
28753521 GCGCTCAGTAGGCCGGAGAGGCAGAATGAGCAAGCCGGGGATCCACCTGGTTCCCCCCTGCGTGC
586 GCACTCAACAGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCAACCCGGTTCCCCCCTACGTGC
****
28753586 TGTTGATCCTACTGCTGGTCCAGCTACCACAACCCTCTA-TCCGATCCA
651 TACCAATCCTACTGCTGGTCCAGCTACCACAACCCT-TAGTCCGATCCA
* * * ***
28753634 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AATACGAGCGTGCGGGTGTTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAACCACGAA-ACGAGCATGCGGGCACTG
* * *
28753698 AGCCGATCGAAGAGGCATAATACACAAGACGAGGATCGACCCAGTCCACCTCTGCGTGCTGCAGG
65 AACCGACCGAAGAGGCATAATACACAAGACGAGGATCGACCCAGTCCACCTCTACGTGCTGCAGG
* *
28753763 -TCTCGCTGCCACAATCCTCTGTCCGACTAAG-GCTTAAACATGGAATGAACTCCCTATGCCTAA
130 TTC-CACTGCCACAATCCTCAGTCCGA-TAAGAGCTTAAACATGGAATGAACTCCCTATGCCTAA
* * * ** *
28753826 GCCAACCCACGAAATGGGCATGCGGGC-GCTCAACTGGTCGGAGAGGCAGAATGCGCAAGCCGGC
193 GCCAACCCACGAAACGGACATG-GGGCTGCTCAACCGACCGGAGAGACAGAATGCGCAAGCCGGC
* * * * ** * **
28753890 GATCGGTA-C-GGTCCCCCTTGTGTGGTGTCGATCCTGTTGTCGCAACACTCGGTCCGGTCCGAT
257 GATC-G-ACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACACTCAGTCCAATCCGAT
* * * * * *
28753953 GTTAGACTGGGAATCAACTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCC
320 CTTAGACTGGAAATCAACTCCATATGCTTAGACTGGGGATAAACACCGTATGCCTAAGTCAACCA
28754018 ACGAAATGAGCGTGCGAGCGCTCAGACGGTTGGAGAGGCCGACCAGAGAGGCATAATGCGCAAGC
385 ACGAAATGAGCGTGCGAGCGCTCAGACGGTTGGAGAGGCCGACCAGAGAGGCATAATGCGCAAGC
* * * * * * * *
28754083 CGCGGATCAGCCCGGTCCCCCTCGGCGTGCTGCCGATCCCGTTGCCGGTTCTACTGCCACAA-TC
450 CGCGGATCAGCCCGATCCCCCTCGACATGCTACCAATCCCGCTGCCGGTCCTACTACCACAACT-
* * *
28754147 CTCGGT-TCGGCTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACGA
514 CTCGATCT-AGCTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
* * * *
28754211 GCGTGCGGGCACTCAACCGATCGGAGAGGCAGAAT-ACGCAAGTCGTGGATCAACCCGG-TCACC
578 GCGTGCGGGCACTCAACAGACCGGAGAGGCAGAATGA-GCAAGCCGGGGATCAACCCGGTTC-CC
* * ** * **** * *
28754274 CTCTACGTGCTACCAATGCTGTTGCTGGTCCTGCTGTTGCAACCCTTAGTCCGGTCCG
641 CCCTACGTGCTACCAATCCTACTGCTGGTCCAGCTACCACAACCCTTAGTCCGATCCA
* *
28754332 ATCTTAGACAGGTAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
28754361 TTAGACATGG
Statistics
Matches: 600, Mismatches: 116, Indels: 22
0.81 0.16 0.03
Matches are distributed among these distances:
697 11 0.02
698 581 0.97
699 7 0.01
700 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (698 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAACCACGAAACGAGCATGCGGGCACTGA
ACCGACCGAAGAGGCATAATACACAAGACGAGGATCGACCCAGTCCACCTCTACGTGCTGCAGGT
TCCACTGCCACAATCCTCAGTCCGATAAGAGCTTAAACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACGGACATGGGGCTGCTCAACCGACCGGAGAGACAGAATGCGCAAGCCGGCGATC
GACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACACTCAGTCCAATCCGATCTTAGA
CTGGAAATCAACTCCATATGCTTAGACTGGGGATAAACACCGTATGCCTAAGTCAACCAACGAAA
TGAGCGTGCGAGCGCTCAGACGGTTGGAGAGGCCGACCAGAGAGGCATAATGCGCAAGCCGCGGA
TCAGCCCGATCCCCCTCGACATGCTACCAATCCCGCTGCCGGTCCTACTACCACAACTCTCGATC
TAGCTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG
GCACTCAACAGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCAACCCGGTTCCCCCCTACGTGC
TACCAATCCTACTGCTGGTCCAGCTACCACAACCCTTAGTCCGATCCA
Found at i:28754363 original size:26 final size:26
Alignment explanation
Indices: 28754334--28754386 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28754324 CCGGTCCGAT
28754334 CTTAGACA-GGTAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
28754360 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28754386 C
1 C
28754387 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28755297 original size:26 final size:26
Alignment explanation
Indices: 28755259--28755311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28755249 TTGATCCAAT
28755259 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
28755285 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
28755311 C
1 C
28755312 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:28755788 original size:26 final size:26
Alignment explanation
Indices: 28755759--28755811 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28755749 CCGGTCCAAT
28755759 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28755785 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28755811 C
1 C
28755812 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28756524 original size:26 final size:26
Alignment explanation
Indices: 28756482--28756534 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28756472 GGCTCAAAAT
*
28756482 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28756508 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28756534 C
1 C
28756535 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28756861 original size:26 final size:26
Alignment explanation
Indices: 28756825--28756877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28756815 CCGATCCGAT
*
28756825 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28756851 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28756877 C
1 C
28756878 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.