Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 308 of 402
Found at i:28951171 original size:26 final size:26
Alignment explanation
Indices: 28951130--28951182 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28951120 CTGGTCCAAT
28951130 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
28951156 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
28951182 C
1 C
28951183 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:28951540 original size:26 final size:26
Alignment explanation
Indices: 28951511--28951563 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28951501 CCGATCTGAT
28951511 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28951537 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28951563 C
1 C
28951564 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28951825 original size:158 final size:157
Alignment explanation
Indices: 28951537--28952230 Score: 619
Period size: 158 Copynumber: 4.4 Consensus size: 157
28951527 ACTCCGTATG
* * *
28951537 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * ** *
28951602 CGGTCGGAAAGGTAAAATGCGTAAGCCGAGGATCAGTTCGATCCCCCCTGTGTGCTGTCA-ATCC
66 CAGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTG-CAGATCC
* * * *
28951666 TACTGCTGCAACCCACAATACAGTCTGAT
130 TACTACCGCAACCCTCGAT-CAGTCTGAT
* * *
28951695 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * * * * *
28951759 CCAGTCAGAGAGGCATAATGCGTAAGCCAAGGATCAGCCCGGTCCCCTCTGCGTGCTGCAGGTCC
65 CCAGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCAGATCC
* * * * **
28951824 TACTACCACAACCCTCGGTCTGACTGGGG
130 TACTACCGCAACCCTCGATCAGTCT-GAT
* * * * *
28951853 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGAGAGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * * * * **
28951918 CGGTCGGAGAGGTAAAATGCCCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTGTTGATCCT
66 CAGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCAGATCCT
* *
28951983 GCTACCGCAACCCTCGATCTGGTCTGAT
131 ACTACCGCAACCCTCGATC-AGTCTGAT
* * * *
28952011 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * * * *
28952075 CCAGCCGGAGAGGCATAATACGCAAGCCGGAGG-TCGGCCCAATCCCCCTCTGCGTGCTGTC-GG
65 CCAGTCGGAGAGGCAAAATGCGCAAGCC-GAGGATCAGCCCGATCCCCC-CTGCGTGCTG-CAGA
* * * * * **
28952138 T-CTCGCTGCCACAACCCTTGGTCTAG-CTGGGG
127 TCCT-ACTACCGCAACCCTCGATC-AGTCT-GAT
* * * * *
28952170 CTTAGACATGAAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT
28952231 CAGTCGACTA
Statistics
Matches: 429, Mismatches: 95, Indels: 23
0.78 0.17 0.04
Matches are distributed among these distances:
157 8 0.02
158 333 0.78
159 87 0.20
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
CAGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCAGATCCT
ACTACCGCAACCCTCGATCAGTCTGAT
Found at i:28952311 original size:317 final size:314
Alignment explanation
Indices: 28951536--28952346 Score: 930
Period size: 316 Copynumber: 2.6 Consensus size: 314
28951526 AACTCCGTAT
* *
28951536 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * *
28951601 TCGGTCGGAAAGGTAAAATGCGTAAGCCGAGGATCAGTTCGATCCCCCCTGTGTGCTGTCAATCC
66 TCGGTCGGAGAGGTAAAATGCGAAAGCTGAGGATCAGCCCGATCCCCCCTATGTGCTGTCGATCC
* * * *
28951666 TACTGCTGCAACCCACAATACAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
131 TACTGC-GCAACCCTCGAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * *
28951731 CCCATGAAATGAGCGTGCGGGCACTGAGCCAGTCAGAGAGGCATAATGCGTAAGCCAAGGATCAG
194 CCCATGAAACAAGCGTGCGGGCACTGAACCAGCCAGAGAGGCATAATACGCAAGCCAAGGATCAG
**
28951796 CCCGGTCCCCTCTGCGTGCTGCAGGTCCTACTACCACAACCCTCGGTCTGACTGGG
259 CCCAATCCCCTCTGCGTGCTGCAGGTCCTACTACCACAACCCTCGGTCTGACTGGG
* * * *
28951852 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGAGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * *
28951917 CCGGTCGGAGAGGTAAAATGCCCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTGTTGATCC
66 TCGGTCGGAGAGGTAAAATGCGAAAGCTGAGGATCAGCCCGATCCCCCCTATGTGCTGTCGATCC
* * *
28951982 TGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
131 TACT-GCGCAACCCTCGATC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
28952047 CCCATGAAACAAGCGTGCGGGCGCTGAACCAGCCGGAGAGGCATAATACGCAAGCCGGAGG-TCG
194 CCCATGAAACAAGCGTGCGGGCACTGAACCAGCCAGAGAGGCATAATACGCAAGCC-AAGGATCA
* * *
28952111 GCCCAATCCCCCTCTGCGTGCTGTC-GGT-CTCGCTGCCACAACCCTTGGTCT-AGCTGGG
258 GCCCAAT-CCCCTCTGCGTGCTG-CAGGTCCT-ACTACCACAACCCTCGGTCTGA-CTGGG
* * * *
28952169 GCTTAGACATGAAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * **
28952234 TC-GACTAGAGAGGTAGAATGCGAAAGCTGAGGATTGGCCCGATCCCTCATTTGTGCTACCGATC
66 TCGGTC-GGAGAGGTAAAATGCGAAAGCTGAGGATCAGCCCGATCCCCCCTATGTGCTGTCGATC
* ** * *
28952298 CTACTGTCGCAACCCTCGATCCGATCCAATTTTAGACTGGGAATCAACT
130 CTACTG-CGCAACCCTCGAT-CGGTCTGATCTTAGACTGGGAATGAACT
28952347 GCATATGCTT
Statistics
Matches: 412, Mismatches: 73, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
315 1 0.00
316 225 0.55
317 184 0.45
318 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGTAAAATGCGAAAGCTGAGGATCAGCCCGATCCCCCCTATGTGCTGTCGATCC
TACTGCGCAACCCTCGATCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CATGAAACAAGCGTGCGGGCACTGAACCAGCCAGAGAGGCATAATACGCAAGCCAAGGATCAGCC
CAATCCCCTCTGCGTGCTGCAGGTCCTACTACCACAACCCTCGGTCTGACTGGG
Found at i:28952379 original size:26 final size:26
Alignment explanation
Indices: 28952329--28952380 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
28952319 CGATCCAATT
*
28952329 TTAGACTGGGAATCAACTGCATATGC
1 TTAGACTGGGAATCAACTCCATATGC
* * *
28952355 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATCAACTCCATATGC
28952381 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCATATGC
Found at i:28952785 original size:158 final size:158
Alignment explanation
Indices: 28952538--28952840 Score: 405
Period size: 158 Copynumber: 1.9 Consensus size: 158
28952528 TCGGCTGGGG
* * ** *
28952538 CTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACAAGGAATAAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * *
28952603 CGACCGGAGAGGTAAAATACGCAAGCCGGGGA-CTGTCTCGGTCCCCCCTACGTGCTGTCAATCC
66 CGACCGGAGAGGTAAAATACGCAAGCCAGGGATC-GGCGCGGTCCCCCCTACGTGCCGTCAATCC
*
28952667 TGCTGCCGTAACCCTCTGTCCGGTTCAAT
130 TGCTGCCGCAACCCTCTGTCCGGTTCAAT
* *
28952696 CTTAGACAAGGAATAAACTCCATATGCCTAAGTCAACCCATGAAACGGGCGTGCGGG-AGCTCAG
1 CTTAGACAAGGAATAAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCA-CTCAG
* * ** *
28952760 CC-AGCCGGAGAGGTAGAATACGCAAGCCAGGGATCGGCGCGGTCCCCCTTGTGTGCCGTCGATC
65 CCGA-CCGGAGAGGTAAAATACGCAAGCCAGGGATCGGCGCGGTCCCCCCTACGTGCCGTCAATC
28952824 CTGCTGCCGCAACCCTC
129 CTGCTGCCGCAACCCTC
28952841 GATTCGGTCC
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
157 2 0.02
158 122 0.98
159 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACAAGGAATAAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGTAAAATACGCAAGCCAGGGATCGGCGCGGTCCCCCCTACGTGCCGTCAATCCT
GCTGCCGCAACCCTCTGTCCGGTTCAAT
Found at i:28953070 original size:26 final size:26
Alignment explanation
Indices: 28953041--28953093 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28953031 CTGGTCCAAT
*
28953041 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28953067 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28953093 C
1 C
28953094 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28953459 original size:26 final size:26
Alignment explanation
Indices: 28953421--28953473 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28953411 CTGGTCTGAT
*
28953421 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28953447 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28953473 C
1 C
28953474 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28953872 original size:159 final size:157
Alignment explanation
Indices: 28953446--28953873 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 157
28953436 AACTTCGTAT
* * *
28953446 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAG-CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
28953511 TCGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACTCAGTCCCCCTTACGTGCTGTCAATCC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTACATGCTGACAATCC
* * * *
28953576 TACTGTCGCAACCCTCGATACGGTCTGA
130 TACTGCCACAACCCTCGATACCGACTGA
* * * * * *
28953604 TCTTAG-ATTAGGAATGAACTCCAGATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTGA
1 GCTTAGCA-T-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * ** * * *
28953668 GCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTTTGCATGCT-ACAGG
64 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-TTACATGCTGACA-A
* *
28953732 TCCTACTGCCACAACCCTTGAT-CCGACTGGG
127 TCCTACTGCCACAACCCTCGATACCGACT-GA
* * * * *
28953763 GCTTAGCCATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAG-CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
28953828 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCC
28953874 TCCTGCGTGC
Statistics
Matches: 217, Mismatches: 46, Indels: 13
0.79 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 97 0.45
159 116 0.53
160 1 0.00
161 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGCATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTACATGCTGACAATCCT
ACTGCCACAACCCTCGATACCGACTGA
Found at i:28953951 original size:26 final size:26
Alignment explanation
Indices: 28953922--28953974 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28953912 TCGATCCGAT
* *
28953922 CTTAGACTGG-GAATGACCTCCGTATG
1 CTTAGACTGGTG-ATGAACTCCATATG
28953948 CTTAGACTGGTGATGAACTCCATATG
1 CTTAGACTGGTGATGAACTCCATATG
28953974 C
1 C
28953975 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCCATATG
Found at i:28954340 original size:26 final size:26
Alignment explanation
Indices: 28954302--28954354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28954292 CTGATCTGAT
*
28954302 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
28954328 CTTAGACAT-GGAATCAACTCCGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
28954354 C
1 C
28954355 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:28954700 original size:159 final size:154
Alignment explanation
Indices: 28954327--28954819 Score: 438
Period size: 159 Copynumber: 3.1 Consensus size: 154
28954317 AACTCCGTAT
* *
28954327 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * ** *
28954392 CCGGTCGGAGAGG--TAGATGCGCAAGTCGGGGACCGGTTCGGTCCCCCCTGGGTGCTGTCTA-T
65 CCGGTCGGAGAGGCATA-ATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCTGCGTGCTG-C-AGT
* * * * * * *
28954454 CTTGTTGCCACAAGCCTTGATCGGTCTGA
126 CCTGCTGCCACAACCCTCGGTCTGACTGA
* * * * * * *
28954483 TCTTAGACTTGGAATGAGCTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTAAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* *
28954548 CCGATTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTTCTGCGTGCTGCAGGTC
65 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCC--CTGCGTGCTGCA-GTC
* *
28954613 CCGCTGCCACAACCCTCGGTCTGACTGGG
127 CTGCTGCCACAACCCTCGGTCTGACT-GA
* * * *
28954642 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAAGGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-AA
* * * * * * *
28954707 -TCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGATCGGCCCTGTCCACCCTGCGTGTTGCCGATC
64 GCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCC-CCCTGCGTGCTGCAG-TC
* * **
28954771 CTGCTACCGCAACCCTCGGTCTGGTTTGA
127 CTGCTGCCACAACCCTCGGTCT-GACTGA
*
28954800 TCTTAGAC-TGTGAATGAACT
1 GCTTAGACATG-GAATGAACT
28954820 TCGTATGCTT
Statistics
Matches: 271, Mismatches: 52, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
156 71 0.26
157 27 0.10
158 78 0.29
159 89 0.33
160 6 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGCAGTCCTGC
TGCCACAACCCTCGGTCTGACTGA
Found at i:28954842 original size:26 final size:26
Alignment explanation
Indices: 28954801--28954853 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28954791 CTGGTTTGAT
* *
28954801 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28954827 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28954853 C
1 C
28954854 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28954904 original size:879 final size:881
Alignment explanation
Indices: 28952537--28954894 Score: 2480
Period size: 881 Copynumber: 2.6 Consensus size: 881
28952527 TTCGGCTGGG
* * * * * *
28952537 GCTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * * * * *
28952602 CCGACCGGAGAGGTAAAATACGCAAGCCGGGGACTGTCTCGGTCCCCCCTACGTGCTGTCAATCC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGACCGACTCAGTCCCCCCTACGTGCTGTCAATCC
* ** * * ** * *
28952667 TGCTGCCGTAACCCTCTG-TCCGGT-TCAATCTTAGACAAGGAATAAACTCCATATGCCTAAGTC
131 TACTGCCACAACCCTC-GATACGGTCT-GATCTTAGATTAGGAATGAACTCCAGATGCCTAAGTC
* * * * * * * *
28952730 AACCCATGAAACGGGCGTGCGGG-AGCTCAGCCAGCCGGAGAGGTAGAATACGCAAGCC-AGGGA
194 AACCCACGAAACGAGCGTACGGGCA-CTAAGCCAGTCGGAGAGGCATAATGCGCAAGCCGA-GGA
* * ** *
28952793 TCGGCGCGGTCCCCCTTGTG--TGCCGT-C-GATCCTGCTGCCGCAACCCTCGATTCGGTCCGGT
257 TCGGCCCGGTCCCCCTT-TGCATG-C-TACAGGTCCCACTGCCACAACCCTCGA----------T
* * *
28952854 CTGATCTTAGACTGGGATGAACTTTGTATGCTCACACTGGGGATGAACTCCGTATGCCTAAGTCA
309 C----C---GACTGGG--G--C--T-TA-G---ACA-T-GGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * ** * **
28952919 ACCCACGAAACGAGCGTACGGGCACTCAGCCAATCGGAGAGGCAGAATGCGCAAGTTGAGGA-CA
354 ACCCATGAAAGGGGCATGCGGGCGCTCAACCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGATC-
* * * * * ** * * * * *
28952983 AACTCGATCCC-CTTACGTGCTGTCGATCCTAC-AGTCGTAACCCTCGATCTGGTCCAATCTTAG
418 GACCCGGTCCCTCCTGCGTGCTACCAATCCTACTA-CCGCAACCCTCGGTCTGGTCCGATCTTAG
*
28953046 ACTGGGAATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTGAACCCACAA
482 ACTGGGAATGAACTTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACAA
* * ** * * **
28953110 AACGAGCGTACGGGCCCTCATTCGGTTGGAGAGGCTGACCGGAGAGGCATAATGTGCAAGTTGGG
546 AACGAGCGTACGGGCACTCAGTCGGTTGGAGAGGCCAACCGAAAAGGCATAATACGCAAGTTGGG
* ** * *
28953175 GATCAGCCTGATCCCTCTCTGTGTGCTGTCGATCCCGCTGACGGTCTTACTGCCACAACCTTCAG
611 GATCAGCCAGATCCCTCTCTACGTGCTGTCGATCCCGCTGACGGTCTTACTACCACAACCCTCAG
* *
28953240 TCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAACGAGCGTAC
676 TCCGACTGGGGCTTAGACATAGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTAC
* * * * * **
28953305 GGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGTAAGTCGGGGATCTGTCCGATCCCTCGTTGTGT
741 GAGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCTCCTTACGT
* * *
28953370 GCTACCAATCTTACTGCTGGTCCTGCTGTTGCAACCCTCCTCTGGTCTGATCTTAGACTGGGAAT
806 GCTACCAATCCTACTGCTGGTCCTACTGTTGCAACCCTCCTCTGATCTGATCTTAGACTGGGAAT
*
28953435 GAACTTCGTAT
871 GAACTCCGTAT
*
28953446 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * *
28953511 TCGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACTCAGTCCCCCTTACGTGCTGTCAATCC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGACCGACTCAGTCCCCCCTACGTGCTGTCAATCC
* *
28953576 TACTGTCGCAACCCTCGATACGGTCTGATCTTAGATTAGGAATGAACTCCAGATGCCTAAGTCAA
131 TACTGCCACAACCCTCGATACGGTCTGATCTTAGATTAGGAATGAACTCCAGATGCCTAAGTCAA
* * * *
28953641 CCCACGAAATGAGTGTGCGGGCACTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGG
196 CCCACGAAACGAGCGTACGGGCACTAAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGG
* * * * *
28953706 TCGGGTCCCCCTTTGCATGCTACAGGTCCTACTGCCACAACCCTTGATCCGACTGGGGCTTAGCC
261 CCCGGTCCCCCTTTGCATGCTACAGGTCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGAC
* * * * *
28953771 ATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAATGGGCGTGCGGGTGCTCAGCCGGTCGG
326 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAGGGGCATGCGGGCGCTCAACCGGTCGG
** * ** *
28953836 AGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCTGCGTGCTATTAATCCTACTGCCG
391 AGAGCCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCTCCTGCGTGCTACCAATCCTACTACCG
* * * * * *
28953901 TAACCCTCAGT-TCGATCCGATCTTAGACTGGGAATGACCTCCGTATGCTTAGACTGGTGATGAA
456 CAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAA
* * *
28953965 CTCCATATGCCTAAGTAAACCCATAAAACGAGCGTGCGGGCACTCAGTCGGTTGGAGAGGCCAAC
520 CTCCGTATGCCTAAGTAAACCCACAAAACGAGCGTACGGGCACTCAGTCGGTTGGAGAGGCCAAC
*
28954030 CGAAAAGGCATAATACGGAAGTTGGGGATCAGCCCAG-TCCC-CTTCTACGTGCTGTCGATCCCG
585 CGAAAAGGCATAATACGCAAGTTGGGGATCAG-CCAGATCCCTC-TCTACGTGCTGTCGATCCCG
28954093 CTGACGGTCTTACTACCACAACCCTCAGTCCGACTGGGGCTTAGACATAGAATGAACTCTGTATG
648 CTGACGGTCTTACTACCACAACCCTCAGTCCGACTGGGGCTTAGACATAGAATGAACTCTGTATG
* * * * *
28954158 CCTAAGCCAACCCATGAAACGAGCGTATGAGCGCTC-GTCGGCTGGAGAGGCAGAATGCGCAAGA
713 CCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAG-
* * * * *
28954222 T-GGGGATCGGCCCGGTCACC-CCTTACGTGCTGCCGATCCTGCTGCTGGTCCTACTGTTGTAAC
777 TCGGGGATCGGCCCGATC-CCTCCTTACGTGCTACCAATCCTACTGCTGGTCCTACTGTTGCAAC
*
28954285 CCTCGTTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
841 CCTC-CTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
28954327 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * * * ** * ** * *
28954392 CCGGTCGGAGAGG-TAGATGCGCAAGTCGGGGACCGGTTCGGTCCCCCCTGGGTGCTGTCTATCT
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGACCGACTCAGTCCCCCCTACGTGCTGTCAATCC
** * * * *
28954456 TGTTGCCACAAGCCTTGAT-CGGTCTGATCTTAGACTT-GGAATGAGCT-CTGTATGCCTAAGTC
131 TACTGCCACAACCCTCGATACGGTCTGATCTTAGA-TTAGGAATGAACTCCAG-ATGCCTAAGTC
* *
28954518 AACCCACGAAACGAGCGTACGGGCACTAAGCC-GATTGGAGAGGCATAATGCGCAAGCCGGGGAT
194 AACCCACGAAACGAGCGTACGGGCACTAAGCCAG-TCGGAGAGGCATAATGCGCAAGCCGAGGAT
* * * * *
28954582 CGGCCCGGT-CCCCTTCTGCGTGCTGCAGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTT
258 CGGCCCGGTCCCCCTT-TGCATGCTACAGGTCCCACTGCCACAACCCTCGATCCGACTGGGGCTT
* *
28954646 AGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAAGGGGCATGCGGGCGCTCAATCGG
322 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAGGGGCATGCGGGCGCTCAACCGG
* * * * * *
28954711 TCGGAGAGCCAGAATGCGCAAGCCGAGGATCGGCCCTGTCCAC-CCTGCGTGTTGCCGATCCTGC
387 TCGGAGAGCCAGAATGCGCAAGCCGAGGATCGACCCGGTCC-CTCCTGCGTGCTACCAATCCTAC
** *
28954775 TACCGCAACCCTCGGTCTGGTTTGATCTTAGACTGTGAATGAACTTCGTATGCTTAGACTGGGGA
451 TACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGA
* * * * *
28954840 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATATGGGCGCTCAGTCGG
516 TGAACTCCGTATGCCTAAGTAAACCCACAAAACGAGCGTACGGGCACTCAGTCGG
28954895 CCAGAGAGGC
Statistics
Matches: 1231, Mismatches: 194, Indels: 78
0.82 0.13 0.05
Matches are distributed among these distances:
878 9 0.01
879 347 0.28
880 210 0.17
881 385 0.31
882 6 0.00
885 1 0.00
886 2 0.00
887 1 0.00
889 1 0.00
891 1 0.00
893 7 0.01
896 1 0.00
900 2 0.00
908 4 0.00
909 230 0.19
910 24 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (881 bp):
GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGACCGACTCAGTCCCCCCTACGTGCTGTCAATCC
TACTGCCACAACCCTCGATACGGTCTGATCTTAGATTAGGAATGAACTCCAGATGCCTAAGTCAA
CCCACGAAACGAGCGTACGGGCACTAAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGG
CCCGGTCCCCCTTTGCATGCTACAGGTCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAGGGGCATGCGGGCGCTCAACCGGTCGG
AGAGCCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCTCCTGCGTGCTACCAATCCTACTACCG
CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTAAACCCACAAAACGAGCGTACGGGCACTCAGTCGGTTGGAGAGGCCAACC
GAAAAGGCATAATACGCAAGTTGGGGATCAGCCAGATCCCTCTCTACGTGCTGTCGATCCCGCTG
ACGGTCTTACTACCACAACCCTCAGTCCGACTGGGGCTTAGACATAGAATGAACTCTGTATGCCT
AAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGG
GGATCGGCCCGATCCCTCCTTACGTGCTACCAATCCTACTGCTGGTCCTACTGTTGCAACCCTCC
TCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:28955249 original size:345 final size:342
Alignment explanation
Indices: 28954484--28955249 Score: 937
Period size: 343 Copynumber: 2.2 Consensus size: 342
28954474 TCGGTCTGAT
* * * * * * *
28954484 CTTAGACTTGGAATGAGCTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTAAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGC
* * * ** ** *
28954549 CGATTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTTCTGCGTGCTGCAGGTCC
66 CG-TCGGAGAGGCAAAATACGCAAGCCAAGGATAAGCCCGGTCCCCCTCTGCGTGCTGCAGGTCC
* * *
28954614 CGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAA
130 CGCTGCCACAACCCTCGGTCTGACTGAGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAA
* * * * *
28954679 CCCATGAAAGGGGCATGCGGGCGCTCAATCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGATCGG
195 CCCAAGAAACGGGCATGCGGGCGCTCAACCAGTCGGAGAGCCAGAATACGCAAGCCGAGGATCGG
* * * *
28954744 CCCTGTCCACCCTGCGTGTTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTTTGATCTTAGACT
260 CCCTGTCCACCCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATCTGATCTTAGACT
* * *
28954809 GTGAATGAACTTCGTATG
325 GGGAATGAACTTCATAAG
*
28954827 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATATGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAG-
* * * * * *
28954892 CGGCCAGAGAGGCAAAATACGTAAGCCAAGGATAAGCCTGGTCCCCCTCTGCGTGCTATC-GGTC
65 CCGTCGGAGAGGCAAAATACGCAAGCCAAGGATAAGCCCGGTCCCCCTCTGCGTGCT-GCAGGTC
* * *
28954956 TCGCTGCCATAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCA
129 CCGCTGCCACAACCCTCGGTCTGACTGAGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCA
* * * * *
28955021 ACCCAAGAAACGGGCGTGCGGGGTCGCTCAGCCAGTCGGGGAGGCAGAATACGCAAGCTGAGGAT
194 ACCCAAGAAACGGGCATGC-GGG-CGCTCAACCAGTCGGAGAGCCAGAATACGCAAGCCGAGGAT
* * **
28955086 CGGCCC-GATCC-CCCTTGTGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGATCTGATCTT
257 CGGCCCTG-TCCACCC-TGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATCTGATCTT
*
28955149 AGACTGGGAGTGAACTTCATAAG
320 AGACTGGGAATGAACTTCATAAG
* * * *
28955172 CTTAGA-TGGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAG
1 CTTAGACT-GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAG
28955236 CCAGTCGGAGAGGC
65 CC-GTCGGAGAGGC
28955250 TGGCTGGAAA
Statistics
Matches: 357, Mismatches: 58, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
343 177 0.50
344 12 0.03
345 168 0.47
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGC
CGTCGGAGAGGCAAAATACGCAAGCCAAGGATAAGCCCGGTCCCCCTCTGCGTGCTGCAGGTCCC
GCTGCCACAACCCTCGGTCTGACTGAGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAAC
CCAAGAAACGGGCATGCGGGCGCTCAACCAGTCGGAGAGCCAGAATACGCAAGCCGAGGATCGGC
CCTGTCCACCCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGATCTGATCTTAGACTG
GGAATGAACTTCATAAG
Found at i:28955385 original size:26 final size:26
Alignment explanation
Indices: 28955356--28955408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28955346 CCGATCCAAT
28955356 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28955382 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28955408 C
1 C
28955409 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28955930 original size:159 final size:159
Alignment explanation
Indices: 28955532--28955962 Score: 467
Period size: 159 Copynumber: 2.7 Consensus size: 159
28955522 TCTTAGATTG
* * * ** * *
28955532 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACTAGCGTTTGGGTGCTGAGCCGG-TCGGA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCAGGCT-GGA
* * * * * *
28955596 GAGGCATG-ATGCACAAG-TCGAGGATCGACCCAGTCCCCCTCTGCTTGCTGTCGGTCTCGCTGC
65 GAGGCA-GAATGCGCAAGCT-GAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGC
*
28955659 CACAACCCTCATTCCACCTAGGGCTTAGACAT
128 CACAACCCTCAGTCCACCTAGGGCTTAGACAT
* * * ***
28955691 GGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGTGCTCAGCAGGCCAAAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCAGGCTGGAG
* * * *
28955756 AGACAAAATGTGCAAGCTGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAC
66 AGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAC
* * *** *
28955821 AACCTTCGGTCTGGCTGGGGCTTAGACAT
131 AACCCTCAGTCCACCTAGGGCTTAGACAT
* * * * *
28955850 GGAATGAACTCTATAGGCCTAAGCCAACCCATGAAACAAGCGTGCGGTTGCTCAACTGGCTGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCAGGCTGGAG
*
28955915 AGGCAGAATGCGCAAGC-CATGGATCGGCCCGGT-CCCCTCTGCGTGCTG
66 AGGCAGAATGCGCAAGCTGA-GGATCGGCCCGGTCCCCCTCTGCGTGCTG
28955963 CCAATCCTGC
Statistics
Matches: 223, Mismatches: 45, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
158 16 0.07
159 206 0.92
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCAGGCTGGAG
AGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAC
AACCCTCAGTCCACCTAGGGCTTAGACAT
Found at i:28956601 original size:184 final size:184
Alignment explanation
Indices: 28956404--28956765 Score: 429
Period size: 184 Copynumber: 2.0 Consensus size: 184
28956394 TTCGACTAGG
* * * *
28956404 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCG
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCA
** * * * **
28956468 GTCGGCTGGAGAGGTAGAATGTGTAAACCGAGGATTGACCCGATCCCCCCTACGTGCTACCGATC
65 GTCAACCGGAGAGGCAGAATGTGCAAACCGAGGACCGACCCGATCCCCCCTACGTGCTACCGATC
* * * * *
28956533 TTGCTGTTGCAACCCTCGGTCCAGTCTAATCTTTGACTGGGAATGAACTTCGTAT
130 CTGCTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTAT
* * **
28956588 GCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAACCAAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
*** * * * **
28956653 TCAACCGGAGAGGCAGAATGTGCAAGTTGAGGACCGACTCGGTCCCCCCTACTTGCTGTCGATCC
66 TCAACCGGAGAGGCAGAATGTGCAAACCGAGGACCGACCCGATCCCCCCTACGTGCTACCGATCC
* * *
28956718 TGCTGTCGTAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACT
131 TGCTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACT
28956766 CCATATGCCT
Statistics
Matches: 146, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
184 145 0.99
185 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
TCAACCGGAGAGGCAGAATGTGCAAACCGAGGACCGACCCGATCCCCCCTACGTGCTACCGATCC
TGCTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTAT
Found at i:28957676 original size:26 final size:26
Alignment explanation
Indices: 28957638--28957687 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
28957628 GGCACAAACT
28957638 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28957664 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
28957688 CGCCTAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28958213 original size:26 final size:26
Alignment explanation
Indices: 28958175--28958230 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
28958165 CCAGTCTGAT
28958175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28958201 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28958227 CTTA
1 CTTA
28958231 AGCCAACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28958293 original size:195 final size:195
Alignment explanation
Indices: 28957958--28958329 Score: 485
Period size: 195 Copynumber: 1.9 Consensus size: 195
28957948 TCTTGCTGTC
* * *
28957958 ACAACCCTCGGTCTAATCTGATCTTACATTGGAAATGAACTCCGTATGCTTAGACTAGGGAAGAA
1 ACAACCCTCAGTCCAATCTGATCTTACACTGGAAATGAACTCCGTATGCTTAGACTAGGGAAGAA
** * * * * * * *
28958023 CTCCGTATGCCTAATTCAGCCCACGAAACGAGTGTGCGGGCGCTTAGTCGATCGGAGAGGCAGAA
66 CTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAA
* * *
28958088 TGCACAAGTCGGGGATCGGCCCAATCCCCCTGCATGCTGTCGATCCTGTTGTTGGTCCTACTGCT
131 TGCACAAGTCGGGGACCAGACCAATCCCCCTGCATGCTGTCGATCCTGTTGTTGGTCCTACTGCT
* * * *
28958153 ACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGA
1 ACAACCCTCAGTCCAATCTGATCTTACACTGGAAATGAACTCCGTATGCTTAGACTAGGGAA-GA
* * * *
28958217 ACTTCGTATGCTTAAGCCAACCAACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGA
65 ACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGA
* ** *
28958282 ATGCGCAAGTCGGGGACCAGACCGGTCCCCCTTCATGCTGTCGATCCT
130 ATGCACAAGTCGGGGACCAGACCAATCCCCCTGCATGCTGTCGATCCT
28958330 ACAACTGCAA
Statistics
Matches: 149, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
194 5 0.03
195 144 0.97
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (195 bp):
ACAACCCTCAGTCCAATCTGATCTTACACTGGAAATGAACTCCGTATGCTTAGACTAGGGAAGAA
CTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAA
TGCACAAGTCGGGGACCAGACCAATCCCCCTGCATGCTGTCGATCCTGTTGTTGGTCCTACTGCT
Found at i:28958627 original size:159 final size:159
Alignment explanation
Indices: 28958200--28958704 Score: 402
Period size: 159 Copynumber: 3.2 Consensus size: 159
28958190 AACTCCGTAT
* * * * *
28958200 GCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCAACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTACGGGCGCTAAG
* * * * *
28958265 CCGACCGGAGAGGTAGAATGCGCAAGTCGGGGACCAGACCGGTCCCCCT-T-CATGCTGTCGATC
66 CCGGCTGGAGAGGTAGAATGCGCAAGTCGGGGATCAGACCTGTCCCCCTCTGCGTGCTGTCGATC
* **
28958328 CTACAACTGCAACCCTCAGTCCGGTCCGA
131 CCACAACCACAACCCTCAGTCCGGTCCGA
* * * * * * *
28958357 TCTTAGAC-TGAGAATGCACTCTGTATGCCTAA-CTCAACCCACGAAACGAGCGTTCGGGTGCTA
1 GCTTAGACATG-GAATGAACTCCGTATGCTTAAGC-CAACCCACGAAATGAGCGTACGGGCGCTA
* * * * * * *
28958420 AGCC-GATCGGAGATGCATAATGCGTAGGTCGGGGATC-GACCTGGTCCCCCTCTGCGTGTTGTC
64 AGCCGGCT-GGAGAGGTAGAATGCGCAAGTCGGGGATCAGACCT-GTCCCCCTCTGCGTGCTGTC
* ** * * *
28958483 GATCCCGCTGCCACAACCCTC-GATCTGG-CTGGG
127 GATCCCACAACCACAACCCTCAG-TCCGGTC-CGA
* * *
28958516 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAATGGGCGTACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTACGGGCGCTAAG
* * ** *
28958581 CCGGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCAG-CTCTATCCCCC-CTGCGTGCTACCAAT
66 CCGGCTGGAGAGGTAGAATGCGCAAGTCGGGGATCAGAC-CTGTCCCCCTCTGCGTGCTGTCGAT
* * ** * ** *
28958644 CCTACTACTGCAACCCTCTGTCCAATCCAA
130 CCCACAACCACAACCCTCAGTCCGGTCCGA
* *
28958674 TCTTAGAC-TGGTAATGAACTTCGTATGCTTA
1 GCTTAGACATGG-AATGAACTCCGTATGCTTA
28958705 GACTGGGGAT
Statistics
Matches: 264, Mismatches: 68, Indels: 31
0.73 0.19 0.09
Matches are distributed among these distances:
156 7 0.03
157 85 0.32
158 53 0.20
159 111 0.42
160 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTACGGGCGCTAAG
CCGGCTGGAGAGGTAGAATGCGCAAGTCGGGGATCAGACCTGTCCCCCTCTGCGTGCTGTCGATC
CCACAACCACAACCCTCAGTCCGGTCCGA
Found at i:28958716 original size:26 final size:26
Alignment explanation
Indices: 28958675--28958727 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28958665 CCAATCCAAT
* *
28958675 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28958701 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28958727 C
1 C
28958728 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28959040 original size:26 final size:26
Alignment explanation
Indices: 28959011--28959063 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28959001 CCGGTCTGAT
*
28959011 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28959037 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28959063 C
1 C
28959064 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28959235 original size:26 final size:26
Alignment explanation
Indices: 28959206--28959258 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28959196 CCAATCCGAT
28959206 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
28959232 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
28959258 C
1 C
28959259 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:28959306 original size:195 final size:196
Alignment explanation
Indices: 28959008--28959361 Score: 575
Period size: 195 Copynumber: 1.8 Consensus size: 196
28958998 CACCCGGTCT
**
28959008 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * ** ** * *
28959073 CCTATGAAACTAGCGTGCGGGTGCTCAGTCGGCCGAAGAGGCAGAATACGCAAGTCGGGGATCGG
66 CCAATGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGG
*
28959138 CCCGAT-CCCCCTGCATGCTGTCGATCCTGCTGTTGGTCCTAATGCCGTAACCTTCAATCCAATC
131 ACCGATCCCCCCTGCATGCTGTCGATCCTGCTGTTGGTCCTAATGCCGTAACCTTCAATCCAATC
28959202 C
196 C
28959203 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
*
28959268 CCAATGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGG
66 CCAATGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGG
* *
28959333 ACCGATCCCCCCTTCATGTTGTCGATCCT
131 ACCGATCCCCCCTGCATGCTGTCGATCCT
28959362 ACTACTGCAA
Statistics
Matches: 144, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
195 124 0.86
196 20 0.14
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (196 bp):
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCAATGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGG
ACCGATCCCCCCTGCATGCTGTCGATCCTGCTGTTGGTCCTAATGCCGTAACCTTCAATCCAATC
C
Found at i:28959747 original size:26 final size:26
Alignment explanation
Indices: 28959706--28959758 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
28959696 CCGGTCTGAT
28959706 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
28959732 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
28959758 C
1 C
28959759 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28960104 original size:25 final size:26
Alignment explanation
Indices: 28960054--28960105 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28960044 CCGGTCCGAT
28960054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28960080 CTTAGACAT-GGAATG-ACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28960105 C
1 C
28960106 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 11 0.44
26 13 0.52
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28960779 original size:26 final size:26
Alignment explanation
Indices: 28960750--28960802 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28960740 CCGATCCAAT
28960750 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
28960776 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
28960802 C
1 C
28960803 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:28961451 original size:697 final size:695
Alignment explanation
Indices: 28960047--28961573 Score: 1810
Period size: 697 Copynumber: 2.2 Consensus size: 695
28960037 CTTCGGCCCG
*
28960047 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG-ACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCCGTATGCCTAAG
* * * * *
28960111 CTAACCCACGAAACTAGCGTGCGGGTGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGTCGGGGA
65 CCAACCCACGAAACGAGCGTGCGGGTGCTCAGTAGACCAGAGAGGCAAAATGCGCAAGTCGGGAA
* * * * *
28960176 TCGACCCGATCCCTCCTGCATGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCAGGGTCC
130 TCGACCCGATCACTCCTGCATACTCTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCACGATCC
* * *
28960241 GGTCTGATCTTACGCTGGGAATGAACTCTCTATGCTTAGACATGGAATGAACTCCGTATGCCTAA
195 GGTCTGATCATACGCTAGGAATGAACTCTCTATGCTTAGACATGGAACGAACTCCGTATGCCTAA
* * * * * * *
28960306 ACCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGGTAGAATGCGCAAGTCGAGG
260 ACCAACCCACAAAACGAGCGTGCGGGCACTCAGTCAGCCGAAAAAGTAGAATGCGCAAGCCGAGG
* * * *
28960371 ACCAACCTGATCCCCCCTGCATGCTGTCGATTTTACTATCCCAACCCTCGGTCTGGTCTGATCTT
325 ACCAACCTGATCCCCCCTGCATGCTGTCGATTCTACTATACCAACCCTCGGTCTAGTCCGATCTT
* * * * * *
28960436 AGACTGGGAATGAAGTCTGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGTTGAGCCGA
390 AGACTAGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCATACGGGCGCTGAGCCGA
* * * * *
28960501 TCGAAGAGGCATAATGCGTAAGTCGAGGAATGGCCCGATCCCTCTCTGCGTGCTGCTGGTCCCGC
455 TCGAAAAGGCATAATGCGAAAGTCGAGGAATGACCCGATCCCTCTCTACGTGCTGCTGATCCCGC
**
28960566 TGCCACAACCCTCGATCCAATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
520 TGCCACAACCCTCGATCCAACGGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * **
28960631 ACGAAACGGGCGTACGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCCCAAGATGAGGATCGGCTC
585 ACGAAACGGGCGTACGGGCACTCAGCCGGCCGGAGAGGCAAAATGCACAAGATGAGGATCAACTC
* * * * *
28960696 GATCCCCCCTATGTGCTATCGATCCTGCTGTCGCAACCCTCAGTCC
650 AATCCCCCATACGTGCTATCGATCCTGCTGTCGCAACCATCAGTCA
*
28960742 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAA
1 G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GGATGAACTCCGTATGCCTAA
* * * *
28960807 GCCAACCTATGAAACGAGCGTGCGGGTGCTCAGTTAG-TCGGAGAGGCAAAATGCGCAAG-CTGG
64 GCCAACCCACGAAACGAGCGTGCGGGTGCTCAG-TAGACCAGAGAGGCAAAATGCGCAAGTC-GG
* * * * * * * * *
28960870 GAATTGGCTCGGTCTAC-CCTGCGTACTACT-GATCCTGCTGCTGGTCCTGTTGTTGTAACCCTC
127 GAATCGACCCGATC-ACTCCTGCATACT-CTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCAC
*
28960933 GATCCGGTCTGATCATA-GACTAGGAATGAACTC-CGTATGCTTAGATATGGAACGAACTCCGTA
190 GATCCGGTCTGATCATACG-CTAGGAATGAACTCTC-TATGCTTAGACATGGAACGAACTCCGTA
* * * ** *
28960996 TGCCTAAGCCAACCCACGAAATGTTCGTGCGGGCACTCAG-CAGGCCGAAAAAAG-AGAATGGGC
253 TGCCTAAACCAACCCACAAAACGAGCGTGCGGGCACTCAGTCA-GCCG-AAAAAGTAGAATGCGC
* * * * * *
28961059 AAGCCGAGGACCGACGTGATCCCTCCTGCATGCTTTCGATTCTACTGTAGCAACCCTCGGT-TCA
316 AAGCCGAGGACCAACCTGATCCCCCCTGCATGCTGTCGATTCTACTATACCAACCCTCGGTCT-A
* *
28961123 GTCCGATCTTAGACTAGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGT
380 GTCCGATCTTAGACTAGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCATACGGGC
* *
28961188 GCTGAGCCGGTCGAAAAGGCATAAT-CTGAAAGTCGAGG-ATCGACCCGCTCCCTCTCTACGTGC
445 GCTGAGCCGATCGAAAAGGCATAATGC-GAAAGTCGAGGAAT-GACCCGATCCCTCTCTACGTGC
* * * * *
28961251 TG-TCGATCCCGTTGCGACAACCCTCGGTCCAGCGGGGGCTTAGACATGGAATGAAGTCCCTATG
508 TGCT-GATCCCGCTGCCACAACCCTCGATCCAACGGGGGCTTAGACATGGAATGAACTCCCTATG
* * * * *
28961315 CCTAAGCCAACCCATGAAA-TGGCTGTGCGGGCACTCAGTCC-GTCGGAGAGGCAAAATGCATAA
572 CCTAAGCCAACCCACGAAACGGGC-GTACGGGCACTCAG-CCGGCCGGAGAGGCAAAATGCACAA
** *
28961378 -ATCGAGGATCAACTCAATCCCTTATACGTGCTATCGATCCTGCTGTTGCAACCATCAGTCTA
635 GAT-GAGGATCAACTCAATCCCCCATACGTGCTATCGATCCTGCTGTCGCAACCATCAGTC-A
* *
28961440 GTCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAG
* * * * ** * * *
28961505 TCAACCCAGGAAACGAGCATGTGGACGCTCAGCT-GACCAGAGAGGCAAGATGCGCAAGCCGGGG
65 CCAACCCACGAAACGAGCGTGCGGGTGCTCAG-TAGACCAGAGAGGCAAAATGCGCAAGTCGGGA
28961569 ATCGA
129 ATCGA
28961574 ACAGATGGTA
Statistics
Matches: 700, Mismatches: 110, Indels: 42
0.82 0.13 0.05
Matches are distributed among these distances:
695 3 0.00
696 58 0.08
697 627 0.90
698 12 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (695 bp):
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGTGCTCAGTAGACCAGAGAGGCAAAATGCGCAAGTCGGGAAT
CGACCCGATCACTCCTGCATACTCTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCACGATCCG
GTCTGATCATACGCTAGGAATGAACTCTCTATGCTTAGACATGGAACGAACTCCGTATGCCTAAA
CCAACCCACAAAACGAGCGTGCGGGCACTCAGTCAGCCGAAAAAGTAGAATGCGCAAGCCGAGGA
CCAACCTGATCCCCCCTGCATGCTGTCGATTCTACTATACCAACCCTCGGTCTAGTCCGATCTTA
GACTAGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCATACGGGCGCTGAGCCGAT
CGAAAAGGCATAATGCGAAAGTCGAGGAATGACCCGATCCCTCTCTACGTGCTGCTGATCCCGCT
GCCACAACCCTCGATCCAACGGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAACGGGCGTACGGGCACTCAGCCGGCCGGAGAGGCAAAATGCACAAGATGAGGATCAACTCA
ATCCCCCATACGTGCTATCGATCCTGCTGTCGCAACCATCAGTCA
Found at i:28961488 original size:26 final size:26
Alignment explanation
Indices: 28961447--28961499 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28961437 CTAGTCCGAT
*
28961447 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
28961473 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
28961499 C
1 C
28961500 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:28962736 original size:26 final size:26
Alignment explanation
Indices: 28962707--28962759 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28962697 CTGGTCCGAT
28962707 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28962733 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28962759 C
1 C
28962760 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28962942 original size:26 final size:26
Alignment explanation
Indices: 28962891--28962943 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28962881 TTGATCCAAT
* *
28962891 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28962917 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28962943 C
1 C
28962944 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28962993 original size:184 final size:184
Alignment explanation
Indices: 28962705--28963380 Score: 770
Period size: 184 Copynumber: 3.6 Consensus size: 184
28962695 GTCTGGTCCG
* *
28962705 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * *
28962770 CCATGAAACGGGCGTGCGGGTGTTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGAT
66 CCATGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGAT
28962835 TTGATCCCTCTTGCGTGTTGTTGATCCTACTACCGTAACCCTTAGTTTGATCCA
131 TTGATCCCTCTTGCGTGTTGTTGATCCTACTACCGTAACCCTTAGTTTGATCCA
* * *
28962889 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
* * ** ** *
28962953 CCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGAGGCAGAATGCACAAGTC-GAGGAAT-
65 CCCATGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGTGCAAGCCTG-GG-ATC
**** * * * * * * * *
28963016 GGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTCGTACTGCCGCAACCC-TCGATCTG
128 GATTTGAT---CCCT-C-T--TG-CG----TGTTGTTGATCCTACTACCGTAACCCTTAG-TTTG
*
28963080 ATCCG
180 ATCCA
* *
28963085 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * *
28963150 CCATGAAAC-AGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGA
66 CCATGAAACGA-GCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGA
28963214 TTTGATCCCTCTTGCGTGTTGTTGATCCTACTACCGTAACCCTTAGTTTGATCCA
130 TTTGATCCCTCTTGCGTGTTGTTGATCCTACTACCGTAACCCTTAGTTTGATCCA
* * *
28963269 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
* * **
28963333 CCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGAGGCAGAATG
65 CCCATGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATG
28963381 CACAAGTCGA
Statistics
Matches: 399, Mismatches: 70, Indels: 46
0.77 0.14 0.09
Matches are distributed among these distances:
183 3 0.01
184 230 0.58
185 5 0.01
187 4 0.01
188 3 0.01
189 3 0.01
191 3 0.01
192 3 0.01
193 4 0.01
195 5 0.01
196 134 0.34
197 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (184 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCATGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGAT
TTGATCCCTCTTGCGTGTTGTTGATCCTACTACCGTAACCCTTAGTTTGATCCA
Found at i:28963116 original size:26 final size:26
Alignment explanation
Indices: 28963087--28963139 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28963077 CTGATCCGAT
28963087 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28963113 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28963139 C
1 C
28963140 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28963179 original size:380 final size:380
Alignment explanation
Indices: 28962351--28963584 Score: 1781
Period size: 380 Copynumber: 3.2 Consensus size: 380
28962341 CCCGACTGGG
* * * * *
28962351 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* ** * * * * * * * * * **
28962416 TCGACTAGAGAGGTAGAATGCGCAAGCCGGGGATCGACTTGGTCCCCCCTACGTGCTGCCGATCC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGATTTGATCCCTCTTGCGTGTTGTTGATCC
** * ** ** * * * * * * *
28962481 TGTTGCCACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGCAAGCTTAGACTAG
131 TACTACCGTAACCCTTAGTTTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
* * * * * * * *
28962546 AGATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGAGCTCAGTCGGTCGGAAA
196 GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGA
* ** * * * * * * *
28962611 GGCAGAATACGTAAGCCG-GGGATCGACCC-AGTCCCCCCTTGCATGCTGCCGATCCTGTTGCTG
261 GGCAGAATGCACAAGTCGAGGAAT-GGCCCGA-TCCCCCC-TACGTGCTGTCGATCCTATTGCTG
* * ** * * *
28962674 GTCCTGCTATCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
323 GTCGTACTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
28962732 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGTTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
28962797 CCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGATTTGATCCCTCTTGCGTGTTGTTGATCC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGATTTGATCCCTCTTGCGTGTTGTTGATCC
28962862 TACTACCGTAACCCTTAGTTTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
131 TACTACCGTAACCCTTAGTTTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
28962927 GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGA
196 GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGA
28962992 GGCAGAATGCACAAGTCGAGGAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTC
261 GGCAGAATGCACAAGTCGAGGAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTC
28963057 GTACTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
326 GTACTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
28963112 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
28963177 CCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGATTTGATCCCTCTTGCGTGTTGTTGATCC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGATTTGATCCCTCTTGCGTGTTGTTGATCC
28963242 TACTACCGTAACCCTTAGTTTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
131 TACTACCGTAACCCTTAGTTTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
28963307 GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGA
196 GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGA
*
28963372 GGCAGAATGCACAAGTCGAGGAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTA
261 GGCAGAATGCACAAGTCGAGGAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTC
*
28963437 GTACTGCCACAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
326 GTACTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
28963492 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGTGCTAAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* *
28963557 CC-AGTCGGAGAGGCAAAATGTGCAAGCC
66 CCGA-CCGGAGAGGCAGAATGTGCAAGCC
28963585 GAGGACTGGT
Statistics
Matches: 778, Mismatches: 72, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
379 1 0.00
380 530 0.68
381 242 0.31
382 5 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (380 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCAGAATGTGCAAGCCTGGGATCGATTTGATCCCTCTTGCGTGTTGTTGATCC
TACTACCGTAACCCTTAGTTTGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGA
GGCAGAATGCACAAGTCGAGGAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTC
GTACTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:28963243 original size:196 final size:196
Alignment explanation
Indices: 28962882--28963605 Score: 777
Period size: 196 Copynumber: 3.8 Consensus size: 196
28962872 ACCCTTAGTT
* *
28962882 TGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCATATGCCTA
1 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTA
* * * * *
28962947 AGTCAACCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGAGGCAGAATGCACAAGTCGAG
66 AGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAG
28963012 GAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTCGTACTGCCGCAACCCTCGAT
131 GAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTCGTACTGCCGCAACCCTCGAT
28963077 C
196 C
* * *
28963078 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTCGTATGCCT
1 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCATATGCCT
* * * * **
28963142 AAGCCAACCCATGAAAC-AGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCT
65 AAGCCAACCCATGAAACGA-GCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCC-
**** * * * * * *
28963206 G-GG-ATCGATTTGAT---CCCT-C-T--TG-CG----TGTTGTTGATCCTACTACCGTAACCCT
128 GAGGAAT-GGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTCGTACTGCCGCAACCCT
* *
28963257 -TAGTT
192 CGA-TC
* *
28963262 TGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCATATGCCTA
1 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTA
* * * * *
28963327 AGTCAACCCATGAAACGAGTGTACGGGCGCTCAATCGGTCGGAGAGGCAGAATGCACAAGTCGAG
66 AGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAG
* *
28963392 GAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTAGTACTGCCACAACCCTCGAT
131 GAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTCGTACTGCCGCAACCCTCGAT
28963457 C
196 C
* * *
28963458 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTCGTATGCCT
1 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCATATGCCT
* * * * * * **
28963522 AAGCCAACCCACGAAATGAACGTGCGGGTGCT-AAGCC-AGTCGGAGAGGCAAAATGTGCAAGCC
65 AAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA-CCGA-TCGGAGAGGCAGAATGCACAAGCC
* * *
28963585 GAGGACTGGTCTGATCCCCCC
128 GAGGAATGGCCCGATCCCCCC
28963606 CTGTGTGCTA
Statistics
Matches: 424, Mismatches: 79, Indels: 50
0.77 0.14 0.09
Matches are distributed among these distances:
183 3 0.01
184 135 0.32
185 3 0.01
187 4 0.01
188 3 0.01
189 3 0.01
191 3 0.01
192 3 0.01
193 4 0.01
195 5 0.01
196 254 0.60
197 4 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (196 bp):
TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTA
AGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAG
GAATGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTCGTACTGCCGCAACCCTCGAT
C
Found at i:28963322 original size:26 final size:26
Alignment explanation
Indices: 28963271--28963323 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28963261 TTGATCCAAT
* *
28963271 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28963297 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28963323 C
1 C
28963324 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28963427 original size:184 final size:184
Alignment explanation
Indices: 28963078--28963537 Score: 435
Period size: 184 Copynumber: 2.4 Consensus size: 184
28963068 ACCCTCGATC
* * *
28963078 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTA
1 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTA
* * * **
28963143 AGCCAACCCATGAAACAGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCTGG
66 AGCCAACCCATGAAACAGGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCTGG
*** * * * * *
28963208 GATCGATTTGATCCCTCTTGCGTGTTGTTGATCCTACTACCGTAACCCTTAGTT
131 GATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTACCGTAACCCTTAGTT
* *
28963262 TGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCT
1 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCT
* * * ** *
28963326 AAGTCAACCCATGAAAC-GAGTGTACGGGCGCTCAATCGGTCGGAGAGGCAGAATGCACAAGTC-
65 AAGCCAACCCATGAAACAG-GCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCT
* **
28963389 GAGGAAT-GGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGCTGGTAGTACTGCCACAACCC-
129 G-GG-ATCGACCCGATCCCCCCTACGTGCTGTCGATCCTA---C------TA---CCGTAACCCT
* *
28963452 TCGATC
180 TAG-TT
* * *
28963458 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTA
1 TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTA
*
28963523 AGCCAACCCACGAAA
66 AGCCAACCCATGAAA
28963538 TGAACGTGCG
Statistics
Matches: 222, Mismatches: 36, Indels: 24
0.79 0.13 0.09
Matches are distributed among these distances:
183 3 0.01
184 132 0.59
185 2 0.01
187 1 0.00
193 2 0.01
195 2 0.01
196 79 0.36
197 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (184 bp):
TGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTA
AGCCAACCCATGAAACAGGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCTGG
GATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTACCGTAACCCTTAGTT
Found at i:28963496 original size:26 final size:26
Alignment explanation
Indices: 28963467--28963519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28963457 CTGATCCGAT
28963467 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28963493 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28963519 C
1 C
28963520 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28963998 original size:26 final size:26
Alignment explanation
Indices: 28963969--28964021 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28963959 CCGGTCCGAT
*
28963969 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTACGTATG
* *
28963995 CTTAGACTGGGGATGAACTACGTATG
1 CTTACACTGGGAATGAACTACGTATG
28964021 C
1 C
28964022 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTACGTATG
Found at i:28964866 original size:26 final size:26
Alignment explanation
Indices: 28964815--28964867 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28964805 CAGGTCTGAT
*
28964815 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATAAACACCATATG
* * *
28964841 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACACCATATG
28964867 C
1 C
28964868 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACACCATATG
Found at i:28965569 original size:26 final size:26
Alignment explanation
Indices: 28965531--28965583 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28965521 GGCTCAAACT
28965531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28965557 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28965583 C
1 C
28965584 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28965941 original size:158 final size:160
Alignment explanation
Indices: 28965556--28965941 Score: 399
Period size: 160 Copynumber: 2.4 Consensus size: 160
28965546 AACTCCGTAT
* *
28965556 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCTATGAAATGAGCGTGCGGGCGCTCA
1 GCTTACACATGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* ** * * *
28965620 ACCGGCCGGAGTGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCTACTCTACGTGCTATCGGT
65 GCCGGCCGGAGTGAAAGAATACGCAAGCCGAGGATCGGCTCGATCCTACCCTACGTGCTATCGAT
* *
28965685 CCCGCTGCCACAACCCTTCGGTCCGGCTAGG
130 CCCGCTGCCACAACCCTTCGGTCCGACTAGA
* * * ** * * *
28965716 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCAG-TCA
1 GCTTACACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGC-GCTCA
* * * * **
28965780 GCCGGTCGGA-TAGAAAGAATATGCAAGCCGAGGATCGGC-CTGGTCC-CCCCTGTGTGCTATCG
65 GCCGGCCGGAGT-GAAAGAATACGCAAGCCGAGGATCGGCTC-GATCCTACCCTACGTGCTATCG
* * *
28965842 ATCCTGCTGCCACAACCC-TCGGTCCGATTCGA
128 ATCCCGCTGCCACAACCCTTCGGTCCGACTAGA
* * * *
28965874 TCTTACA-ATGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTGA
1 GCTTACACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
28965938 GCCG
65 GCCG
28965942 ATCGAAGAGG
Statistics
Matches: 183, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 61 0.33
159 30 0.16
160 87 0.48
161 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (160 bp):
GCTTACACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGTGAAAGAATACGCAAGCCGAGGATCGGCTCGATCCTACCCTACGTGCTATCGATC
CCGCTGCCACAACCCTTCGGTCCGACTAGA
Found at i:28965964 original size:158 final size:159
Alignment explanation
Indices: 28965556--28966010 Score: 436
Period size: 158 Copynumber: 2.9 Consensus size: 159
28965546 AACTCCGTAT
* *
28965556 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCTATGAAATGAGCGTGCGGGCGCTCA
1 GCTTACACATGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * ** *
28965620 ACCGGCCGGAGTGGCAGAATGCGCAAGCCGAGGATCGG-CTCGATCCTACTCTACGTGCTATCGG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCT-GGTCC-CCTCTGTGTGCTATCGA
* * *
28965684 TCCCGCTGCCACAACCCTTCGGTCCGGCTAGG
128 TCCTGCTGCCACAACCCTTCGGTCCGACTAGA
* * * ** * * *
28965716 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCAG-TCA
1 GCTTACACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGC-GCTCA
* ** ** *
28965780 GCCGGTCGGATAGAAAGAATATGCAAGCCGAGGATCGGCCTGGTCCCCCCTGTGTGCTATCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCTCTGTGTGCTATCGATC
* *
28965845 CTGCTGCCACAACCC-TCGGTCCGATTCGA
130 CTGCTGCCACAACCCTTCGGTCCGACTAGA
* * * *
28965874 TCTTACA-ATGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTGA
1 GCTTACACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
28965938 GCCGATCGAAGAGGCATAATGCGCAAGCC-AGGGATCGACCCGGTCCCCTTCTGTGTGTTACCGA
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCTGGTCCCC-TCTGTGTGCTATCGA
*
28966002 TCCTACTGC
128 TCCTGCTGC
28966011 TGGTCCTACT
Statistics
Matches: 235, Mismatches: 53, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 93 0.40
159 48 0.20
160 86 0.37
161 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTACACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCTCTGTGTGCTATCGATCC
TGCTGCCACAACCCTTCGGTCCGACTAGA
Found at i:28966647 original size:159 final size:157
Alignment explanation
Indices: 28966071--28966732 Score: 573
Period size: 159 Copynumber: 4.2 Consensus size: 157
28966061 AACTCAGTAT
* * *
28966071 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * * *
28966136 TCGATCGGAGAGGTAGAATATGCAAGCTGAA-GAACGGCCCGGTCCCCTCTACGTACTATCGAAC
66 CCGGTCGGAGAGGTAGAATGCGCAAGC-CAAGGATCGACCCGGTCCCCTCTACGTGCTACCGATC
**
28966200 -CTGCTGCCGCAACCCTCGGTCCTGTCCAA
130 TC-GCTGCCGCAACCCTCGGTCC-GTCTGA
* **
28966229 CCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ***
28966294 CCTGTCGGAGAGGCAGAGTGCGCAAGCCAGGGACCGACCCGGTCCCCTCTAGCGTGCTGTAGATC
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCTCTA-CGTGCTACCGATC
* *
28966359 TTGCTGCCGTAACCCTCGGTCCGATCTGA
130 TCGCTGCCGCAACCCTCGGTCCG-TCTGA
* * ** * * * * * *
28966388 TCTTAGAC-TGGGATTGAACTTTGTACGCCTAAGTCAATCCATGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *** * *
28966452 GCCGGCCGGAGA-GTCATAATGCGCAAGCTGGGGATCGACCTGGTCCCCCTCTACGTGCTACCGG
65 GCCGGTCGGAGAGGT-AGAATGCGCAAGCCAAGGATCGACCCGGT-CCCCTCTACGTGCTACCGA
* * *
28966516 TCTCGCAGCCACAACCCTCGGTCCAG-CTTGG
128 TCTCGCTGCCGCAACCCTCGGTCC-GTC-TGA
* * * * *
28966547 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
28966612 CCGGTCGGAGAGGTAGAATGCGTAAGCCAATGATCGGCTTGGTCCCCCCTACGTGCTACCGATC-
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCTCTACGTGCTACCGATCT
* ** * *
28966676 CTACTATCGCAAACCTCAGTCCGGTCTGA
131 C-GCTGCCGCAACCCTCGGTCC-GTCTGA
*
28966705 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
28966733 TTAGACTAGG
Statistics
Matches: 401, Mismatches: 89, Indels: 28
0.77 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 161 0.40
159 225 0.56
160 12 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCTCTACGTGCTACCGATCT
CGCTGCCGCAACCCTCGGTCCGTCTGA
Found at i:28966735 original size:26 final size:26
Alignment explanation
Indices: 28966706--28966758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28966696 CCGGTCTGAT
28966706 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
28966732 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28966758 C
1 C
28966759 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28967628 original size:159 final size:157
Alignment explanation
Indices: 28967417--28967886 Score: 383
Period size: 159 Copynumber: 3.0 Consensus size: 157
28967407 CCTTGGTCCG
* * * * *
28967417 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTACGGCAACCCATGAAACGAGCGTGCGGGT
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
* * * *
28967482 GCTCAGCCAATCGGAAAGGCAGAATGAGCAAGCCGGGTATCGACCCAGTCCCCACCTACGTGCTG
66 GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGG-ATCGACCCAGTCCCC-CCTGCGTGCTG
28967547 TCGATCCTGCTGTCGTAACCCTCGATCCA
129 TCGATCCTGCTGTCGTAACCCTCGATCCA
* * * * *
28967576 GTCCGATCTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
* * ** * * * * *
28967641 ACTGAGCCGGCCAGAGAGCCATAATGCGCAAGCCGGGGATCG-GCCTGATCCCCCTCTGCGTGCT
66 GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCAG-TCCCCC-CTGCGTGCT
* ** ** * * *
28967705 GTCGGT-CTCGCTACCACAACTCTTGGTCC-
128 GTCGATCCT-GCTGTCGTAACCCTCGATCCA
* * * * *
28967734 G-ACTATGGCTTAGACAT-AGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCG
1 GTCCGAT--CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* ** * * * * * * * *
28967797 GGCACTCAATCGGTAGGAGAGGCAGAATGCACAAGCTGGGGGTCGGCCCGGTCCCCCCTACGTGC
63 GGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGC-CGGGATCGACCCAGTCCCCCCTGCGTGC
*
28967862 TGTCGATCCTGCTGCCGTAACCCTC
127 TGTCGATCCTGCTGTCGTAACCCTC
28967887 AAATGCTCTG
Statistics
Matches: 241, Mismatches: 60, Indels: 21
0.75 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 30 0.12
159 201 0.83
160 7 0.03
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCAGTCCCCCCTGCGTGCTGTC
GATCCTGCTGTCGTAACCCTCGATCCA
Found at i:28968903 original size:26 final size:26
Alignment explanation
Indices: 28968867--28968919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28968857 TCGATCCGAT
*
28968867 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28968893 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28968919 C
1 C
28968920 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28969101 original size:26 final size:26
Alignment explanation
Indices: 28969063--28969115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28969053 CTGGTCTGAT
*
28969063 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
28969089 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
28969115 C
1 C
28969116 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:28969391 original size:159 final size:159
Alignment explanation
Indices: 28969088--28969591 Score: 466
Period size: 159 Copynumber: 3.2 Consensus size: 159
28969078 AACTCCGTAT
* *
28969088 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCATGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAA
* * * *
28969153 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGGTCCCCTCCTATGTCTTGTCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTATGTCTTGTCGATC
* ** * *
28969218 CTGCTATCGGAACCCTCGGTTC-GGTCCAA
131 CTGCTACCACAACCCTCGGTCCAGCT-CAA
* * * * * *
28969247 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGTGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCA
* * *
28969311 GCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCC-CTCTGTGTGC-TGTCG
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTC-CTATGT-CTTGTCG
* * * ***
28969374 GT-CTCGCTGCCACAACCCTTGGTCCAGCTGGG
128 ATCCT-GCTACCACAACCCTCGGTCCAGCTCAA
* * ** *
28969406 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * ** *
28969471 TCGATCGGTGAGGCAGAATGCGCAAGCCGGGGATCAACCTGATCCCC-CATGCGTGC-TATCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTATGT-CTTGTCGAT
* * * * * **
28969534 CCTGCTATCGCAACCCTCGATCCGGTTTGA
130 CCTGCTACCACAACCCTCGGTCCAGCTCAA
28969564 GCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
28969592 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 58, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 58 0.21
159 216 0.77
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTATGTCTTGTCGATC
CTGCTACCACAACCCTCGGTCCAGCTCAA
Found at i:28969593 original size:26 final size:26
Alignment explanation
Indices: 28969564--28969617 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
28969554 TCCGGTTTGA
28969564 GCTTAGACTAGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
* * *
28969590 GCTTAGACTGGGGATGAACTTCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
28969616 GC
1 GC
28969618 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCCGTAT
Found at i:28970594 original size:185 final size:185
Alignment explanation
Indices: 28970274--28970666 Score: 459
Period size: 185 Copynumber: 2.1 Consensus size: 185
28970264 GTGGCTCAAA
* * * **
28970274 ATCTTAGACTAGGAATGAACTCCTTATGCTTAGACATGGAATGAAATCTGTATGCCTAAGCCAAC
1 ATCTTAGACTTGGAATGAACTCCGTAGGCTTAGACATGGAATGAAATCCATATGCCTAAGCCAAC
** * * * * * *
28970339 CCATGAAACGAGCGTGCGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGC
66 CCACAAAACGAGCATGCGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCTAGGGACCAAC
* * *
28970404 CCGATCCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCT-G
131 CCGATCCCCCCCTACGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGT-TGG
* * *
28970459 ATCTTAGACTTGGAATGAACTCCGTAGGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAA
1 ATCTTAGACTTGGAATGAACTCCGTAGGCTTAGACAT-GGAATGAAATCCATATGCCTAAGCCAA
* * * * *
28970523 CCCACAAAATGAGCATGCGGGCGCTGAACCGATCGAAGAGGCATAATGCGTAAGAC-AGGGACCA
65 CCCACAAAACGAGCATGCGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCAAG-CTAGGGACCA
* * * *
28970587 ACCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTTGGTCTGGTTGG
129 ACCCGATCCCCCCCTACGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGTTGG
** *
28970644 GGCTTAGACATGGAATGAACTCC
1 ATCTTAGACTTGGAATGAACTCC
28970667 CTATGCCTAA
Statistics
Matches: 174, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
184 2 0.01
185 171 0.98
186 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (185 bp):
ATCTTAGACTTGGAATGAACTCCGTAGGCTTAGACATGGAATGAAATCCATATGCCTAAGCCAAC
CCACAAAACGAGCATGCGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCTAGGGACCAAC
CCGATCCCCCCCTACGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGTTGG
Found at i:28970903 original size:158 final size:159
Alignment explanation
Indices: 28970594--28970888 Score: 443
Period size: 158 Copynumber: 1.9 Consensus size: 159
28970584 CCAACCCGAT
* * * *
28970594 CCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTTGGTCTGGTTGGGGCTTAGACATGGAA
1 CCCCCTCTACGTGCTGTCGATCCCGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAA
* * * *
28970659 TGAACTCCCTATGCCTAACCCAACCCATGAAACGGGCGCACGGGCACTCAGCTGGCCGGAGAGGT
66 TGAACTCCCTATGCCTAACCCAACCCATGAAACGGGCGCACGGGCACTCAACCGACCGGAGAGGC
28970724 AGAATGCACAAGCCAGAGATCGGCTTGGA
131 AGAATGCACAAGCCAGAGATCGGCTTGGA
* * *
28970753 CCCCC-CTGCGTGTTGTCGATCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAA
1 CCCCCTCTACGTGCTGTCGATCCCGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAA
*
28970817 TGAACTCCCTATGCCTAAGCCAA-CCATGAAACGGGCGTGCA-GGGCACTCAACCGACCGGAGAG
66 TGAACTCCCTATGCCTAACCCAACCCATGAAACGGGC--GCACGGGCACTCAACCGACCGGAGAG
28970880 GCAGAATGC
129 GCAGAATGC
28970889 GTAAGCCAAG
Statistics
Matches: 122, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
157 13 0.11
158 101 0.83
159 8 0.07
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
CCCCCTCTACGTGCTGTCGATCCCGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAA
TGAACTCCCTATGCCTAACCCAACCCATGAAACGGGCGCACGGGCACTCAACCGACCGGAGAGGC
AGAATGCACAAGCCAGAGATCGGCTTGGA
Found at i:28970992 original size:26 final size:26
Alignment explanation
Indices: 28970963--28971015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28970953 CTGGTCCGAT
28970963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
28970989 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28971015 C
1 C
28971016 CTAACTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28971371 original size:26 final size:26
Alignment explanation
Indices: 28971342--28971395 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
28971332 TCCAATCCGA
28971342 GCTTAGACTAT-GAATGAACTCCGTAT
1 GCTTAGAC-ATGGAATGAACTCCGTAT
*
28971368 GCTTAGACATGGAATGAACTCTGTAT
1 GCTTAGACATGGAATGAACTCCGTAT
28971394 GC
1 GC
28971396 CTAGCCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACTCCGTAT
Found at i:28971660 original size:159 final size:158
Alignment explanation
Indices: 28971369--28971868 Score: 441
Period size: 159 Copynumber: 3.2 Consensus size: 158
28971359 ACTCCGTATG
* * * *
28971369 CTTAGAC-ATGGAATGAACTCTGTATGCCT-AGCCAA-CCACGAAATTGAGCGTA-GGGTGCCTC
1 CTTAGACTAT-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTACAGGCG-CTC
* * * * * * **
28971430 GG-CG-TCGGAGAGGCAGAATGCGTAAA-CCGGGGATCGG-TCCGATCCCCCCTTGCGTGCTGTC
63 GGCCGACCGGAAAGGCAGAATGCG-AAAGCTGGGGATTGGCT-CGGTCCCCCC-TGCATGCTACC
*
28971491 GATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
125 AATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
28971525 CTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACGAGCGTGCAGGCGCT-GAG
1 CTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCG-G
* * *
28971589 CCGACCGGAGAGGCATAATGCGAAAGCTGGGGATCT-GCTCGGTCCCCCTCTGCATGCTACCGAT
65 CCGACCGGAAAGGCAGAATGCGAAAGCTGGGGAT-TGGCTCGGTCCCCC-CTGCATGCTACCAAT
* **
28971653 -CTCGCTGCCACAACCCTCGGTCTGG-CTAGGG
128 CCT-GCTGCCGCAACCCTCGGTCTGGTCT-GAT
* * * *
28971684 CTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCGG
1 CTTAGACTAT-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCGG
* * * * *
28971748 CTGATCGGAAAGGCAGAATGCGTAAGCTGGGGATTGGCTCGGTCCCTCCTGCGTGCTACCAATCC
65 CCGACCGGAAAGGCAGAATGCGAAAGCTGGGGATTGGCTCGGTCCCCCCTGCATGCTACCAATCC
* * * * *
28971813 TACTACCGCAACCCTCGGTCCGATCCGAT
130 TGCTGCCGCAACCCTCGGTCTGGTCTGAT
** *
28971842 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTATGAATGAACTCCGTATGC
28971869 TTAGACTAAG
Statistics
Matches: 278, Mismatches: 47, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
156 26 0.09
157 16 0.06
158 74 0.27
159 159 0.57
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCGGC
CGACCGGAAAGGCAGAATGCGAAAGCTGGGGATTGGCTCGGTCCCCCCTGCATGCTACCAATCCT
GCTGCCGCAACCCTCGGTCTGGTCTGAT
Found at i:28975786 original size:158 final size:159
Alignment explanation
Indices: 28975459--28975833 Score: 341
Period size: 158 Copynumber: 2.4 Consensus size: 159
28975449 CCGATCGAAG
* * * * * *
28975459 AGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTAGGACTCGCTG--CC
1 AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTATGCGTGCTGT-CGA-TC-CTGTTAC
** * ** ** * *
28975522 A-CAACCCTCAGTCCAATAGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
63 AGCAACCCTTGGTCCGATCTGATCTTAGACATGGAATAAACTCCCTATGCATAAACCAACCCACG
*
28975586 AAACAGGCGTGCACGCGCTCAGCCGGCCAGAG
128 AAACAGGCGTGCACGCGCTCAGCCGGCCAGAA
* *** *
28975618 AGGCAGAATGCGTAAGTTGGGGATCGGCTCGGTCCCCC-ATGCGTGCTGTCGATCCTGTTACAGC
1 AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTATGCGTGCTGTCGATCCTGTTACAGC
** *
28975682 AACCCTTGGTCCGATCTGATCTTAGAC-TGGGAATAAACTCTGTATGCATAAGCCAACCCACGAA
66 AACCCTTGGTCCGATCTGATCTTAGACAT-GGAATAAACTCCCTATGCATAAACCAACCCACGAA
** * *
28975746 AC-GAGCGTGCGGGCGCTGAGCTGGCC-GAAA
130 ACAG-GCGTGCACGCGCTCAGCCGGCCAG-AA
** * * * *
28975776 AGGCTTAATGCGCAAGCCAGGGATCTGCCCGGTCCCCCTCTGTGTGCTGTCGGTCCTG
1 AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTATGCGTGCTGTCGATCCTG
28975834 CTGCCACAAG
Statistics
Matches: 172, Mismatches: 37, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
155 3 0.02
156 2 0.01
157 7 0.04
158 112 0.65
159 48 0.28
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTATGCGTGCTGTCGATCCTGTTACAGC
AACCCTTGGTCCGATCTGATCTTAGACATGGAATAAACTCCCTATGCATAAACCAACCCACGAAA
CAGGCGTGCACGCGCTCAGCCGGCCAGAA
Found at i:28975906 original size:159 final size:159
Alignment explanation
Indices: 28975416--28975970 Score: 485
Period size: 159 Copynumber: 3.5 Consensus size: 159
28975406 AAATAAACTG
* **
28975416 CAACCCATGAAAGCGAAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGG
1 CAACCCACGAAA-CG-AGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGG
* * * *
28975481 ATCGGCCTGGTCCCCCTCTGCGTGCTGTAGG-ACTCGCTGCCACAACCCTCAGTCCAATAGGGCC
64 ATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCT-GCTGCCACAACCCTCAGTCCAACAGGGCC
* * *
28975545 TTAGACATGGAATGAACTCCCTATGCCTAAAC
128 TTAGATATGGAATGAACTCCCTATGCATAAGC
** * * * **
28975577 CAACCCACGAAAC-AGGCGTGCACGCGCTCAGCCGGCC-AGAGAGGCAGAATGCGTAAGTTGGGG
1 CAACCCACGAAACGA-GCGTGCGGGCGCTGAGCCGGCCGA-AGAGGCATAATGCGCAAGCCGGGG
* * * ** ** * * **
28975640 ATCGGCTCGGTCCCCC-ATGCGTGCTGTCGATCCTG-TTACAGCAACCCTTGGTCCGATC-TGAT
64 ATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCA-CAACCCTCAGTCC-AACAGGGC
* * **
28975702 CTTAGACT-GGGAATAAACTCTGTATGCATAAGC
127 CTTAGA-TATGGAATGAACTCCCTATGCATAAGC
* * * *
28975735 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAAAGGCTTAATGCGCAAGCCAGGGAT
1 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGAT
* * * * *
28975800 CTGCCCGGTCCCCCTCTGTGTGCTGTCGGTCCTGCTGCCACAAGCCTCAGTCCAGCAGGGGCTTA
66 CGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCAACAGGGCCTTA
* *
28975865 GATATGGAATGAACTCCCTATACGTAAGC
131 GATATGGAATGAACTCCCTATGCATAAGC
* * * * * ** * * * * *
28975894 CAACCCATGAAACGGGCGTGCGGGCACTCAGTCGATCGGAGACGCAAAATGCGCAAGCTGGGAAT
1 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGAT
*
28975959 CGACCCGGTCCC
66 CGGCCCGGTCCC
28975971 TCCTGCATGC
Statistics
Matches: 301, Mismatches: 81, Indels: 26
0.74 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 116 0.39
159 167 0.55
160 4 0.01
161 11 0.04
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (159 bp):
CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGAT
CGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCAACAGGGCCTTA
GATATGGAATGAACTCCCTATGCATAAGC
Found at i:28976022 original size:317 final size:319
Alignment explanation
Indices: 28975416--28976038 Score: 761
Period size: 317 Copynumber: 2.0 Consensus size: 319
28975406 AAATAAACTG
* * * *
28975416 CAACCCATGAAAGCGAAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGG
1 CAACCCACGAAAGCGAAGCGTGCGGGCGCTGAGCCGACCGAAAAGGCATAATGCGCAAGCCAGGG
* *
28975481 ATCGGCCTGGTCCCCCTCTGCGTGCTGTAGGACTCGCTGCCACAACCCTCAGTCCAATAGGGCCT
66 ATCGGCCCGGTCCCCCTCTGCGTGCTGTAGGACTCGCTGCCACAACCCTCAGTCCAACAGGGCCT
* *
28975546 TAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAGGCGTGCACGCGCTCAGCCG
131 TAGACATGGAATGAACTCCCTATACCTAAACCAACCCACGAAACAGGCGTGCACGCACTCAGCCG
* * * * * * * * * * **
28975611 GCCAGAGAGGCAGAATGCGTAAGTTGGGGATCGGCTCGGTCCCCCATGCGTGCTGTCGATCCTGT
196 ACCAGAGACGCAAAATGCGCAAGCTGGGAATCGACCCGGTCCCCCATGCATGCTATCGATCCTAC
* * * *
28975676 TACAGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATAAACTCTGTATGCATAAGC
261 TACAGAAACCCTCGGTCAGATCCGATCTTAGACTGGGAATAAACTCTGTATGCATAAGC
* * *
28975735 CAACCCACGAAA-CG-AGCGTGCGGGCGCTGAGCTGGCCGAAAAGGCTTAATGCGCAAGCCAGGG
1 CAACCCACGAAAGCGAAGCGTGCGGGCGCTGAGCCGACCGAAAAGGCATAATGCGCAAGCCAGGG
* * * * * * *
28975798 ATCTGCCCGGTCCCCCTCTGTGTGCTGTCGGTC-CTGCTGCCACAAGCCTCAGTCCAGCAGGGGC
66 ATCGGCCCGGTCCCCCTCTGCGTGCTGTAGGACTC-GCTGCCACAACCCTCAGTCCAACAGGGCC
* * * * * ** *
28975862 TTAGATATGGAATGAACTCCCTATACGTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGTC
130 TTAGACATGGAATGAACTCCCTATACCTAAACCAACCCACGAAACAGGCGTGCACGCACTCAGCC
* *
28975927 GATCGGAGACGCAAAATGCGCAAGCTGGGAATCGACCCGGTCCCTCC-TGCATGCTATCGATCCT
195 GACCAGAGACGCAAAATGCGCAAGCTGGGAATCGACCCGGTCCC-CCATGCATGCTATCGATCCT
** *
28975991 ACTATTGAAACCCTCGGTCTAG-TCCGATCTTAGACTGGGAATGAACTC
259 ACTACAGAAACCCTCGGTC-AGATCCGATCTTAGACTGGGAATAAACTC
28976039 CGATCAAAGT
Statistics
Matches: 254, Mismatches: 47, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
316 1 0.00
317 237 0.93
318 5 0.02
319 11 0.04
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (319 bp):
CAACCCACGAAAGCGAAGCGTGCGGGCGCTGAGCCGACCGAAAAGGCATAATGCGCAAGCCAGGG
ATCGGCCCGGTCCCCCTCTGCGTGCTGTAGGACTCGCTGCCACAACCCTCAGTCCAACAGGGCCT
TAGACATGGAATGAACTCCCTATACCTAAACCAACCCACGAAACAGGCGTGCACGCACTCAGCCG
ACCAGAGACGCAAAATGCGCAAGCTGGGAATCGACCCGGTCCCCCATGCATGCTATCGATCCTAC
TACAGAAACCCTCGGTCAGATCCGATCTTAGACTGGGAATAAACTCTGTATGCATAAGC
Found at i:28976868 original size:26 final size:26
Alignment explanation
Indices: 28976817--28976869 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28976807 CCGGTTTGAT
**
28976817 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
28976843 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
28976869 C
1 C
28976870 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28977258 original size:159 final size:158
Alignment explanation
Indices: 28976842--28977258 Score: 450
Period size: 159 Copynumber: 2.6 Consensus size: 158
28976832 AACTCTGTAT
*
28976842 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * **
28976907 CCGGCCGGAGAGGCAGAATG-CGTAAATCGAGGATCAGCCTGGTTCCCCCTGCGTGCTATCAATC
66 CCGGTCGGAGAGGCAGAATGTC-CAAGTCGGGGATCAGCCCAGTTCCCCCTGCGTGCTATCAATC
* * *
28976971 CTGCTGCCACAACCCTCAGTCCGGTTTGA
130 CTGCTACCACAACCCTCAGTCCGGCTGGA
* * * * * ** * *
28977000 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAATGAGCGTGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * *
28977064 GCCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCAG-TCCCCCT-C-TGCATATTGCC
65 GCCGGTCGGAGAGGCAGAATGTCCAAGTCGGGGATCAGCCCAGTTCCCCCTGCGTGC-TA-T--C
* *
28977126 AGTCCTGCTACCACAACCCTC-GATCCGGCTGGG
126 AATCCTGCTACCACAACCCTCAG-TCCGGCTGGA
* * * *
28977159 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * *
28977224 CCGATCGGAGAGGTAGAATGTCCAAGTTGGGGATC
66 CCGGTCGGAGAGGCAGAATGTCCAAGTCGGGGATC
28977259 GGTCCGGCCC
Statistics
Matches: 209, Mismatches: 42, Indels: 15
0.79 0.16 0.06
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 9 0.04
158 86 0.41
159 107 0.51
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGGTCGGAGAGGCAGAATGTCCAAGTCGGGGATCAGCCCAGTTCCCCCTGCGTGCTATCAATCC
TGCTACCACAACCCTCAGTCCGGCTGGA
Found at i:28977368 original size:26 final size:26
Alignment explanation
Indices: 28977318--28977368 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
28977308 CTGGTCCGAT
**
28977318 CTTAGACTGGGAATGAACTTTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
28977344 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
28977369 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:28977703 original size:26 final size:26
Alignment explanation
Indices: 28977674--28977726 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28977664 CCAATCTGAT
*
28977674 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
28977700 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28977726 C
1 C
28977727 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28978429 original size:26 final size:26
Alignment explanation
Indices: 28978391--28978443 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28978381 GGCTCAAACT
28978391 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28978417 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28978443 C
1 C
28978444 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28978932 original size:26 final size:26
Alignment explanation
Indices: 28978890--28978942 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28978880 GGCTCAAACT
* *
28978890 CTTAGACTGAGATTGAATTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
28978916 CTTAGACATG-GAATGAACTTCGTATG
1 CTTAGAC-TGAGAATGAACTTCGTATG
28978942 C
1 C
28978943 CTAAGCCAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:28979116 original size:26 final size:26
Alignment explanation
Indices: 28979087--28979139 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28979077 CCGGTCTGAT
28979087 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28979113 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28979139 C
1 C
28979140 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28979412 original size:158 final size:156
Alignment explanation
Indices: 28979113--28979612 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 156
28979103 ACTCCGTATG
* * *
28979113 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCG-TGAGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCAGGGT--T-AG
* * * * * *
28979177 CTGGTCAAAGAGGC-TGAATGCGCAAGCTGGGGACCGACCCGATCCCCC-CTACGGGCTGTCGAT
63 CCGGCCAAAGAGGCAT-AATGCGCAAGC-CGGGATCGACCCGATCCCCCTCGACGTGCTGTCGAT
* *
28979240 CCTGCTATCGCAACCCTCGATCCGATTCGAT
126 CCTACTATCGCAACCCTCGGTCCGATTCGAT
* * *
28979271 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCGACCCACAAAACGAGCGTTCAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCAGG-GTT-AG
* *
28979335 CCGGCCGAAGAGGCATAATGCGCAAGCCGGGATCGACCCGGTCCCCCTCGACGTGCTGTCGATCC
63 CCGGCCAAAGAGGCATAATGCGCAAGCCGGGATCGACCCGATCCCCCTCGACGTGCTGTCGATCC
* * * * ** * **
28979400 CACTACCACAACCCTCGGTCTGGCTGGGG
128 TACTATCGCAACCCTCGGTCCGATTCGAT
* * * * *
28979429 CTTAGACATGGAATGAACTCCTTATGGCTAAGCCAACCCATGAAACGGGCGTGC-GGAGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCAGG-G-TTAGC
* * * * * * *
28979493 CGACCAAAGAGGCAGAATGTGTAAGTCGAGGATCGGCCCGATGCCCCCT-G-CGTGATGTCGATC
64 CGGCCAAAGAGGCATAATGCGCAAGCCG-GGATCGACCCGAT-CCCCCTCGACGTGCTGTCGATC
* *
28979556 CTACTGTCGCAACCCTCGGTCCGATCCGAT
127 CTACTATCGCAACCCTCGGTCCGATTCGAT
*
28979586 CTTAGAC-TGGGAATAAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
28979613 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 99 0.36
158 160 0.58
159 12 0.04
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCAGGGTTAGCCG
GCCAAAGAGGCATAATGCGCAAGCCGGGATCGACCCGATCCCCCTCGACGTGCTGTCGATCCTAC
TATCGCAACCCTCGGTCCGATTCGAT
Found at i:28979636 original size:26 final size:26
Alignment explanation
Indices: 28979586--28979638 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28979576 CCGATCCGAT
*
28979586 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTACGTATG
* * *
28979612 CTTAGACTGGGGATGAACTATGTATG
1 CTTAGACTGGGAATAAACTACGTATG
28979638 C
1 C
28979639 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTACGTATG
Found at i:28980347 original size:159 final size:158
Alignment explanation
Indices: 28979993--28980422 Score: 447
Period size: 159 Copynumber: 2.7 Consensus size: 158
28979983 ACTCTGTATC
* *
28979993 CTTAGACATGGAATGAACTTCATATGGCTAAGCCAACCCACGAAATGAGCGTGGGGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
* * * ** * *
28980058 CTGCCAGAGAGGTAGAATGCATAAGCCGGGGACCGA-CCTAGTCCCCC-CTACGTGCTGTCGATC
66 C-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCCTCTACGTGCTGTCGATC
* ** * * *
28980121 CTGCTGCCGTAACCCTCGGTTCGGTCTGAT
129 CTGCTACCACAACCCTCAGTCCGGTCTGAG
* * * * * * *
28980151 CTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAACATGTAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG
* * ** *
28980215 TCGACGGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTGTGCTGTCGGTC
65 CCGAC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATC
*
28980280 CTGCTACCACAACCCTCAGTCCGG-CTGGGG
129 CTGCTACCACAACCCTCAGTCCGGTCT-GAG
* * * * *
28980310 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
* *
28980375 CGATCGGAGAGGCAGAATGCGGAAGCCGGGGATC-AGCCCGGTCCCCCT
66 CGA-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCT
28980423 GCATGCTGTC
Statistics
Matches: 221, Mismatches: 43, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 88 0.40
159 128 0.58
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
CGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCT
GCTACCACAACCCTCAGTCCGGTCTGAG
Found at i:28985878 original size:26 final size:26
Alignment explanation
Indices: 28985838--28985890 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28985828 GGCTCAAAAT
28985838 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
28985864 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
28985890 C
1 C
28985891 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:28986232 original size:26 final size:26
Alignment explanation
Indices: 28986181--28986233 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28986171 CCGGTCTGAT
* *
28986181 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
**
28986207 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
28986233 C
1 C
28986234 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:28986970 original size:159 final size:157
Alignment explanation
Indices: 28986745--28987405 Score: 578
Period size: 159 Copynumber: 4.2 Consensus size: 157
28986735 TCGGTTTGAT
* * ** *
28986745 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCA--CGGGTGCTGA
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-G-GCATGCGGGCACTCA
* * * * *
28986808 GCTGATCGGAGAGGCATAATGCACAAGTCAGGGATCAACCTGGTCCCCCTCAACGTGCTATCGGT
63 GCTGACCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGGT
28986873 CCCGCTGCCACAACCCTCAGTCCGGCTAGGG
128 CCCGCTGCCACAACCCTCAGTCCGGCT-GGG
* * *
28986904 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCTAGGAAACGGGCATGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGC
* * ** * * * * *
28986969 TGATCTGAGAGGCAGAATGTGCAA-ACCGTGCATCAGCCCGGTCCCCC-CTACGTGCTGTCGATC
65 TGACCGGAGAGGCAGAATGCACAAGTCAG-GGATCAGCCTGGTCCCCCTCTACGTGCTGTCGGTC
** * * * * **
28987032 CTACTACCGCAACCCTCGGTCTGGTCTGAT
129 CCGCTGCCACAACCCTCAGTCCGG-CTGGG
* * * * * * * * *
28987062 CTTAGACTGGAAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCATTGAGC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGC
* * * * * * * *
28987127 AGACCGAAGAGGCATAATGCACAAGCCGGGGATC-GGCTCGGTCCCCCTCTACGTGCTGCCAGTC
65 TGACCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCT-GGTCCCCCTCTACGTGCTGTCGGTC
28987191 CCGCTGCCACAACCCTCAGTCCGGCTGGGG
129 CCGCTGCCACAACCCTCAGTCCGGCT-GGG
* * * *
28987221 CTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTGGGCGCTCAGC
1 CTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGC
* * * * * *
28987286 TGGCCGGAGAGGCAGAATGCATAAGTCAGGGATCGGCCCGGTCCCCC-CTACATGCTGTCGATCC
65 TGACCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGGTCC
* * * * * * **
28987350 TGCTACCGCAACCCTCGGTCTGGTTCGAT
130 CGCTGCCACAACCCTCAGTCCGGCT-GGG
28987379 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
28987406 TTAGACTGGG
Statistics
Matches: 390, Mismatches: 99, Indels: 27
0.76 0.19 0.05
Matches are distributed among these distances:
157 9 0.02
158 172 0.44
159 203 0.52
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCT
GACCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGGTCCC
GCTGCCACAACCCTCAGTCCGGCTGGG
Found at i:28987092 original size:158 final size:157
Alignment explanation
Indices: 28986596--28987405 Score: 623
Period size: 158 Copynumber: 5.1 Consensus size: 157
28986586 GCTTAAACAC
* * * ** * * *
28986596 GGAATGAACTCCGTATGCCTAAGCCAACCCA-TAAATTGAGCATGCGGGTGCTCAACCGATCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGGGCATGCGGGCACTCAGCTGATCGGA
* * * * * * * * * *
28986660 GAGGCAAAATGCATAAGTCAAGGATCGGCCCGATCCCCCCTGCGTGGTGTCGATCCTACTACCGT
65 GAGGCAGAATGCACAA-ACAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGC
* * *
28986725 AACCTTCGAT-TCGGT-TTGATCTTAGACT
129 AACCCTCGGTCT-GGTCTAGATCTTAGACT
* * ** *
28986753 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCA--CGGGTGCTGAGCTGATCG
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-G-GCATGCGGGCACTCAGCTGATCG
* * * * * * * * *
28986816 GAGAGGCATAATGCACAAGTCAGGGATCAACCTGGTCCCCCTCAACGTGCTATCGGTCCCGCTGC
63 GAGAGGCAGAATGCACAA-ACAGGGATCAGCCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTAC
* * * **
28986881 CACAACCCTCAGTCCGG-CTAGGGCTTAGACAT
126 CGCAACCCTCGGTCTGGTCTAGATCTTAGAC-T
* * * *
28986913 GGAATGAACTCCATATGCCTAAGCCAACCTAGGAAACGGGCATGCGGGCACTCAGCTGATCTGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCTGATCGGAG
** * * *
28986978 AGGCAGAATGTGCAAACCGTGCATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCGCA
66 AGGCAGAATGCACAAACAG-GGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCA
28987043 ACCCTCGGTCTGGTCT-GATCTTAGACT
130 ACCCTCGGTCTGGTCTAGATCTTAGACT
* * * * * * * * * * * *
28987070 GGAAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCATTGAGCAGACCGAA
1 GG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCTGATCGGA
* * * * * * * *
28987135 GAGGCATAATGCACAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTG-CCAGTCCCGCTGCC
65 GAGGCAGAATGCACAA-ACAGGGATCAGCCCGGTCCCCC-CTACGTGCTGTCGA-TCCTGCTACC
* * * * ** *
28987199 ACAACCCTCAGTCCGG-CTGGGGCTTAGATAT
127 GCAACCCTCGGTCTGGTCTAGATCTTAGA-CT
* * * **
28987230 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTGGGCGCTCAGCTGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCTGATCGGAG
* * * *
28987295 AGGCAGAATGCATAAGTCAGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCGCA
66 AGGCAGAATGCACAA-ACAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCA
*
28987360 ACCCTCGGTCTGGT-TCGATCTTAGACT
130 ACCCTCGGTCTGGTCTAGATCTTAGACT
28987387 GGGAATGAACTCCGTATGC
1 -GGAATGAACTCCGTATGC
28987406 TTAGACTGGG
Statistics
Matches: 508, Mismatches: 124, Indels: 40
0.76 0.18 0.06
Matches are distributed among these distances:
157 7 0.01
158 256 0.50
159 238 0.47
160 7 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCTGATCGGAG
AGGCAGAATGCACAAACAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAA
CCCTCGGTCTGGTCTAGATCTTAGACT
Found at i:28987172 original size:317 final size:315
Alignment explanation
Indices: 28986586--28987405 Score: 1004
Period size: 317 Copynumber: 2.6 Consensus size: 315
28986576 AACTCTATAT
* * * * * * **
28986586 GCTTAAACACGGAATGAACTCCGTATGCCTAAGCCAACCCA-TAAATTGAGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-CGGGCATGCGGGCACTCA
* * * * * * * * *
28986650 ACCGATCGAAGAGGCAAAATGCATAAGTCAAGG-ATCGGCCCGATCCCCCCTGCGTGGTGTCGAT
65 GCTGACCGGAGAGGCAGAATGCATAAG-C-AGGCATCAGCCCGGTCCCCCCTACGTGCTGTCGAT
* * *
28986714 CCTACTACCGTAACCTTCGAT-TCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
128 CCTACTACCGCAACCCTCGGTCT-GG-TTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * * *
28986778 CAACCCACGAAATGAGCGCACGGGTGCTGAGCTGATCGGAGAGGCATAATGCACAAGTCAGGGAT
191 CAACCCACGAAATGAGCGCACGGGCACTGAGCAGACCGAAGAGGCATAATGCACAAGCCAGGGAT
* *
28986843 CAACCTGGTCCCCCTCAACGTGCTATCGGTCCCGCTGCCACAACCCTCAGTCCGGCTAGG
256 CAACCTGGTCCCCCTCAACGTGCTACCAGTCCCGCTGCCACAACCCTCAGTCCGGCTAGG
* *
28986903 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCTAGGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
* * *
28986968 CTGATCTGAGAGGCAGAATGTGCA-AA-CCGTGCATCAGCCCGGTCCCCCCTACGTGCTGTCGAT
66 CTGACCGGAGAGGCAGAA--TGCATAAGCAG-GCATCAGCCCGGTCCCCCCTACGTGCTGTCGAT
* *
28987031 CCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGTC
128 CCTACTACCGCAACCCTCGGTCTGGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * *
28987096 AACCCATGAAATGAGCGTTCGGGCATTGAGCAGACCGAAGAGGCATAATGCACAAGCCGGGGATC
192 AACCCACGAAATGAGCGCACGGGCACTGAGCAGACCGAAGAGGCATAATGCACAAGCCAGGGATC
** * * *
28987161 -GGCTCGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCGGCTGGG
257 AACCT-GGTCCCCCTCAACGTGCTACCAGTCCCGCTGCCACAACCCTCAGTCCGGCTAGG
* * * *
28987220 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
* * * *
28987285 CTGGCCGGAGAGGCAGAATGCATAAGTCAGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCC
66 CTGACCGGAGAGGCAGAATGCATAAG-CAGGCATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
*
28987350 TGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
130 TACTACCGCAACCCTCGGTCTGGTT-GATCTTAGACTGGGAATGAACTCCGTATGC
28987406 TTAGACTGGG
Statistics
Matches: 433, Mismatches: 58, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
315 5 0.01
316 8 0.02
317 408 0.94
318 8 0.02
319 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
CTGACCGGAGAGGCAGAATGCATAAGCAGGCATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCT
ACTACCGCAACCCTCGGTCTGGTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAATGAGCGCACGGGCACTGAGCAGACCGAAGAGGCATAATGCACAAGCCAGGGATCAACC
TGGTCCCCCTCAACGTGCTACCAGTCCCGCTGCCACAACCCTCAGTCCGGCTAGG
Found at i:28987415 original size:26 final size:26
Alignment explanation
Indices: 28987379--28987431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28987369 CTGGTTCGAT
*
28987379 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28987405 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28987431 C
1 C
28987432 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28987774 original size:25 final size:25
Alignment explanation
Indices: 28987738--28987785 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
28987728 TCTGATCTTA
28987738 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
* *
28987763 GACTGGGGATGAACTTCGTATGC
1 GACTGGGAATGAACTCCGTATGC
28987786 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:28988299 original size:26 final size:26
Alignment explanation
Indices: 28988258--28988310 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28988248 CTAGTTCAAT
*
28988258 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
28988284 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
28988310 C
1 C
28988311 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28988873 original size:26 final size:26
Alignment explanation
Indices: 28988835--28988887 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28988825 CTGATTCGAT
* *
28988835 CTTAGACTGGGAATTAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28988861 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28988887 C
1 C
28988888 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28988995 original size:196 final size:195
Alignment explanation
Indices: 28988467--28988995 Score: 661
Period size: 196 Copynumber: 2.7 Consensus size: 195
28988457 TCCGACTGGG
* *
28988467 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * * * * *
28988532 CCGGCTGGAAAGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCACCCCTACGTGCTGCCAATC
66 CC-GCTGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCAGTCC-CCCATGCGTGCTTCGAATC
* *
28988597 CTGCTGCTGGTCCTGCTACCATAACCCTCGATCCAGGCCGATCTTAGATTGGGAATGAACTCCAT
129 CTGCTGCTGGTCCTGCTACCACAACCCTCGATCCAGGCCGATCTTAGACTGGGAATGAACTCCAT
28988662 AT
194 AT
*
28988664 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * * ** * *
28988729 CCGGTCGGAGAGGCAGAATCTACAAG-CTAGGGATCGGTCCAGTCCCCCTTGTGTGCTGTCG-AT
66 CCGCT-GGAGAGGCAGAATGTGCAAGCCGA-GGATCGACCCAGTCCCCCATGCGTGCT-TCGAAT
** * ** *
28988792 CCTGCTGCTGGTCCTGCTACTGCAACCCTCGAT-CTGATTCGATCTTAGACTGGGAATTAACTCC
128 CCTGCTGCTGGTCCTGCTACCACAACCCTCGATCCAG-GCCGATCTTAGACTGGGAATGAACTCC
*
28988856 TTAT
192 ATAT
* *
28988860 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAATCGAGCGAGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * *
28988925 CCGACTGGAGAGGTAGAATGTGCAAGCCGAGGATCGACCCAATCCCTCATGCATGCTATCGAAT-
66 CCG-CTGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCAGTCCCCCATGCGTGCT-TCGAATC
28988989 CTGCTGC
129 CTGCTGC
28988996 CATAACCCTC
Statistics
Matches: 283, Mismatches: 42, Indels: 15
0.83 0.12 0.04
Matches are distributed among these distances:
195 2 0.01
196 183 0.65
197 98 0.35
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
CCGCTGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCAGTCCCCCATGCGTGCTTCGAATCCT
GCTGCTGGTCCTGCTACCACAACCCTCGATCCAGGCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:28989385 original size:26 final size:26
Alignment explanation
Indices: 28989334--28989386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28989324 CCAGTCAGAT
* *
28989334 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28989360 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28989386 C
1 C
28989387 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28990437 original size:26 final size:26
Alignment explanation
Indices: 28990401--28990453 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28990391 CCGATCTAAT
28990401 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
28990427 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
28990453 C
1 C
28990454 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:28991110 original size:158 final size:159
Alignment explanation
Indices: 28990914--28991204 Score: 376
Period size: 158 Copynumber: 1.8 Consensus size: 159
28990904 CCGACTGGGG
* * **
28990914 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATGGGCATGCGGGCGCTCG-A
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCATGCAAGCG-TCGAA
* * *
28990978 CCGACCGGAGAGGTATAATGCACAAGCTGGGGATCGGCCC-GATCCCCC-CTGCGTGCTG-TCGA
65 CCGACCGGAGAGGCATAATACACAAGCTGAGGATCGGCCCAG-TCCCCCTCTGCGTGCTGCT-GA
28991040 TCCTGCAACCGCAACCCTTAGTCCAGTTCGAT
128 TCCTGCAACCGCAACCCTTAGTCCAGTTCGAT
* * * ** *
28991072 CTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTTAACCCATGAAACGAGTGTGCAAGCGTTGAA
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCATGCAAGCGTCGAA
* *
28991136 CCGACCGGAGAGGCATAATACGCAAGCTGAGGATCGGCCCAGTCCCCCTCTGTGTGCTGCTGATC
65 CCGACCGGAGAGGCATAATACACAAGCTGAGGATCGGCCCAGTCCCCCTCTGCGTGCTGCTGATC
28991201 CTGC
130 CTGC
28991205 TGCCACAACC
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
157 3 0.03
158 91 0.81
159 18 0.16
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCATGCAAGCGTCGAAC
CGACCGGAGAGGCATAATACACAAGCTGAGGATCGGCCCAGTCCCCCTCTGCGTGCTGCTGATCC
TGCAACCGCAACCCTTAGTCCAGTTCGAT
Found at i:28992035 original size:26 final size:26
Alignment explanation
Indices: 28991999--28992051 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28991989 CCAGTCCAAT
*
28991999 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
28992025 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
28992051 C
1 C
28992052 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:28992471 original size:26 final size:26
Alignment explanation
Indices: 28992430--28992482 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28992420 CTGCGTGCTA
*
28992430 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28992456 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
28992482 C
1 C
28992483 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28992677 original size:26 final size:26
Alignment explanation
Indices: 28992639--28992691 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28992629 CCCATCCGAT
*
28992639 CTTAGACTAGGAATGAACTGCATATG
1 CTTAGACTAGGAATGAACTCCATATG
28992665 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
28992691 C
1 C
28992692 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:28993008 original size:159 final size:158
Alignment explanation
Indices: 28992664--28993159 Score: 347
Period size: 158 Copynumber: 3.1 Consensus size: 158
28992654 AACTGCATAT
* *
28992664 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACGAAATGAGCATGCGGGCACTCAG
* * * * *
28992729 CTGGTCGGAGAGGCAGAATGCGCAAGCCATGGACCGACCAGGTCCCTCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCAGGCCCCCCCTGCGTGCTATCGATCC
* * *
28992794 TACTACCGCAACCCTCGGTCTGATCCGA
131 CACTACCACAACCCTCGGTCCGATCCGA
* * * * ** ** **
28992822 TCATAGAC-TGGGAATGAACTTCGTATGCCCAAGTTAACCCACGAAATGAGTGTTTGGGCACAT-
1 GCTTAGACAT-GGAATGAACTCCATATGCCCAAGCCAACCCACGAAATGAGCATGCGGGCAC-TC
* ** * * * *
28992885 AGCCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGCCCCCCTCTGCGTGCTATCGG
64 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCAGGCCCCCC-CTGCGTGCTATCGA
** * * *
28992950 TCCCGTTGCCACAACCCTCGGTCCGA-CTGGG
128 TCCCACTACCACAACCCTCGGTCCGATC-CGA
* * ** * * * * *
28992981 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAATGAAA-CAGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACGAAATGA-GCATGCGGGCACTCA
** ** * * * * * * * *
28993045 GCCGACCCAAGTGGCAAAATACGCAAGCCAGGGATC-AGCCCGGTCCCCACTGCGTGCTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGA-CCAGGCCCCCCCTGCGTGCTATCGAT
** * * * *
28993109 CCTGCTATCACAACCCTCGATCCGGTCTGA
129 CCCACTACCACAACCCTCGGTCCGATCCGA
*
28993139 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
28993160 TGTATGCTTA
Statistics
Matches: 258, Mismatches: 70, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
157 2 0.01
158 141 0.55
159 114 0.44
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACGAAATGAGCATGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCAGGCCCCCCCTGCGTGCTATCGATCC
CACTACCACAACCCTCGGTCCGATCCGA
Found at i:28993169 original size:26 final size:26
Alignment explanation
Indices: 28993140--28993192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28993130 CCGGTCTGAT
*
28993140 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
28993166 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28993192 C
1 C
28993193 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28993364 original size:196 final size:196
Alignment explanation
Indices: 28993129--28993495 Score: 547
Period size: 196 Copynumber: 1.9 Consensus size: 196
28993119 CAACCCTCGA
*
28993129 TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGC
* * * ** * * *
28993193 CTAAGTCAACCCATAAAACGAGCGTGCAGGTGCTCAGTCGGTCGAAGAGGCAGAATGCATAAGCT
65 CTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGGTCGAAGAGGCAGAATGAACAAGCC
* * * *
28993258 GAGGATCGACTCGATCCCCTCTGCGTGCTGTCGATCCTGCTGTTGGTCCTGCTACCGTAATCCTC
130 AAGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTTGGTCCTGCTACCGTAATCCTC
28993323 AG
195 AG
28993325 TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCC
* ** * *
28993390 TAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAACCGGTCGGAGAGGTAGAATGAACAAGCCA
66 TAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGGTCGAAGAGGCAGAATGAACAAGCCA
*
28993455 AGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTG
131 AGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTG
28993496 CTGCAACCCT
Statistics
Matches: 151, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
196 150 0.99
197 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCC
TAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAACCGGTCGAAGAGGCAGAATGAACAAGCCA
AGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTTGGTCCTGCTACCGTAATCCTCA
G
Found at i:28993365 original size:26 final size:26
Alignment explanation
Indices: 28993336--28993388 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28993326 CCGGTCTGAT
*
28993336 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
28993362 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28993388 C
1 C
28993389 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28993696 original size:159 final size:158
Alignment explanation
Indices: 28993361--28994105 Score: 655
Period size: 159 Copynumber: 4.8 Consensus size: 158
28993351 AACTCTGTAT
***
28993361 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAA
* * ** * * * *
28993426 CCGGTCGGAGAGGTAGAATGAACAAGCCAAGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCC
* ** *
28993491 TGCTGCTGCAACCCTCGGTCCGGTCT-GA
131 CGCTGCCACAACCCTCGGTCC-GACTGGA
* * * * * * * *
28993519 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCA
* * * * * *
28993583 GCCAGCCGGAGAAGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCTTCTGCGTGCTGTCGAT
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCC-CCTGCGTGCTGTCGAT
*
28993648 CCCGCTGCCACAACCCTCGGTCCGACTGGG
129 CCCGCTGCCACAACCCTCGGTCCGACTGGA
* *
28993678 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAA
* * * *
28993743 TCGGCCGGAGAGGCAGAATACGCAAGCCTG-GGCTCGGCTCGATCCCCCCTAG-GTGC--T-G-T
66 CCGGCCGGAGAGGCAGAATGCGCAAGCC-GAGGATCAGCTCGATCCCCCCT-GCGTGCTGTCGAT
* *
28993802 ----C-G---CAACCCTCGGTCC-AGTCCGA
129 CCCGCTGCCACAACCCTCGGTCCGACT-GGA
* * * * * * *
28993824 TCTTAAAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCA
* ** * * * * *
28993888 GCCGGCCAAAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGCGTGATGCCGGT
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCC-CTGCGTGCTGTCGAT
*
28993953 CCCGCTGCCACAACCCTCAGTCCGACTGG-
129 CCCGCTGCCACAACCCTCGGTCCGACTGGA
* * * * * * *
28993982 GACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCA
1 G-CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCA
* * * * * * * *
28994047 GCCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTG
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCTGCGTGCTG
28994106 CTGATCCTGC
Statistics
Matches: 463, Mismatches: 98, Indels: 52
0.76 0.16 0.08
Matches are distributed among these distances:
145 4 0.01
146 106 0.23
147 5 0.01
149 1 0.00
150 2 0.00
151 1 0.00
154 1 0.00
155 2 0.00
156 2 0.00
157 1 0.00
158 105 0.23
159 228 0.49
160 5 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCGACTGGA
Found at i:28993801 original size:697 final size:706
Alignment explanation
Indices: 28992430--28993803 Score: 1829
Period size: 697 Copynumber: 2.0 Consensus size: 706
28992420 CTGCGTGCTA
28992430 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCC
* * *
28992495 ACGAAACGAGCGTGCGGGTGCTCAACCGGTCGACAGGCCGGTCAGAGAGGCATAATGTGCAAGTC
66 ACAAAACGAGCGTGCAGGTGCTCAACCGGTCGACAGGCAGGTCAGAGAGGCATAA--TGC-A-TC
* * * *
28992560 GGGGATTATCTCGGTCCCTCCCTACGTGCTACCGATCCTACTGTTGGTCCTGCTGCCGTAACCCT
127 GAGGATGATCTCGATCCCTCCCTACGTGCTACCGATCCTACTGTTGGTCCTGCTACCGTAACCCT
*
28992625 CGGTCCCATCCGATCTTAGACTAGGAATGAACTGCATATGCTTAGACATGGAATGAACTCCATAT
192 CAGTCCCATCCGATCTTAGACTAGGAATGAACTGCATATGCTTAGACATGGAATGAACTCCATAT
* * * **
28992690 GCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAG
257 GCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGAACAAG
* * * *
28992755 CCATGGACCGACCAGGTCCCTCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGATCC
322 CCAAGGACCGACCAGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGATCC
* * ***
28992820 GATCATAGACTGGGAATGAACTTCGTATGCCCAAGTTAACCCACGAAATGAGTGTTTGGGCACAT
387 GATCATAGACTGGGAATGAACTTCGTATGCCCAAGTCAACCCACAAAATGAGTGTGCAGGCACAT
* * * * * * *
28992885 AGCCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGCCCCCCTCTGCGTGCTATCGG
452 AGCCAGCCGGAGAAGCATAATGCGCAAGCCGAGGATCAGCCCGGCCCCCCTCTGCGTGCTATCGA
*
28992950 TCCCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
517 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * *
28993015 CAACAAATGAAACAGGCGTACGGGCGCTCAGCCGACCCAAGTGGCAAAATACGCAAGCCAGGGAT
582 CAACAAACGAAACAGGCGTACAGGCGCTCAACCGACCCAAGAGGCAAAATACGCAAGCCAGGGAT
*
28993080 CAGCCCGGTCCCCACTGCGTGCTGTCGATCCTGCTATCACAACCCTCGATCCGGTCTGAT
647 CAGCCCGATCCCCACTGCGTGCTGTCGATCCTGCTATCACAACCCTCGATCCGGTCTGAT
* * *
28993140 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCC
* ** *
28993205 ATAAAACGAGCGTGCAGGTGCTCAGTCGGTCGA-A-G-AGG-CAGA-ATGCATAA-GC-T-GAGG
66 ACAAAACGAGCGTGCAGGTGCTCAACCGGTCGACAGGCAGGTCAGAGAGGCATAATGCATCGAGG
* * ** * *
28993262 ATCGA-CTCGATCCC-CTCTGCGTGCTGTCGATCCTGCTGTTGGTCCTGCTACCGTAATCCTCAG
131 AT-GATCTCGATCCCTCCCTACGTGCTACCGATCCTACTGTTGGTCCTGCTACCGTAACCCTCAG
** * * * *
28993325 TCCGGTCTGATCTTAGACTGGGAATGAACT-CTGTATGCTTAGACATGGAATGAACTCCGTATGC
195 TCCCATCCGATCTTAGACTAGGAATGAACTGC-ATATGCTTAGACATGGAATGAACTCCATATGC
* * *
28993389 CTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAACCGGTCGGAGAGGTAGAATGAACAAGCC
259 CTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGAACAAGCC
* * * * * * *
28993454 AAGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGA
324 AAGGACCGACCAGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGATCCGA
* * *
28993519 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCAGGCGC-TGA
389 TCATAGACTGGGAATGAACTTCGTATGCCCAAGTCAACCCACAAAATGAGTGTGCAGGCACAT-A
* * * *
28993583 GCCAGCCGGAGAAGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCTTCTGCGTGCTGTCGAT
453 GCCAGCCGGAGAAGCATAATGCGCAAGCCGAGGATCAGCCCGGCCCCCCTCTGCGTGCTATCGAT
28993648 CCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
518 CCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
** * * * ** * * *
28993713 AACCCACGAAACGGGCGTACAGGCGCTCAATCGGCCGGAGAGGCAGAATACGCAAGCCTGGGCTC
583 AACAAACGAAACAGGCGTACAGGCGCTCAACCGACCCAAGAGGCAAAATACGCAAGCCAGGGATC
* * *
28993778 GGCTCGATCCCCCCTAG-GTGCTGTCG
648 AGCCCGATCCCCACT-GCGTGCTGTCG
28993804 CAACCCTCGG
Statistics
Matches: 576, Mismatches: 84, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
696 2 0.00
697 451 0.78
698 14 0.02
699 2 0.00
702 2 0.00
705 7 0.01
706 4 0.01
707 2 0.00
708 1 0.00
709 1 0.00
710 90 0.16
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (706 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCC
ACAAAACGAGCGTGCAGGTGCTCAACCGGTCGACAGGCAGGTCAGAGAGGCATAATGCATCGAGG
ATGATCTCGATCCCTCCCTACGTGCTACCGATCCTACTGTTGGTCCTGCTACCGTAACCCTCAGT
CCCATCCGATCTTAGACTAGGAATGAACTGCATATGCTTAGACATGGAATGAACTCCATATGCCT
AAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGAACAAGCCAA
GGACCGACCAGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCGATCCGATC
ATAGACTGGGAATGAACTTCGTATGCCCAAGTCAACCCACAAAATGAGTGTGCAGGCACATAGCC
AGCCGGAGAAGCATAATGCGCAAGCCGAGGATCAGCCCGGCCCCCCTCTGCGTGCTATCGATCCC
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
AAACGAAACAGGCGTACAGGCGCTCAACCGACCCAAGAGGCAAAATACGCAAGCCAGGGATCAGC
CCGATCCCCACTGCGTGCTGTCGATCCTGCTATCACAACCCTCGATCCGGTCTGAT
Found at i:28993924 original size:305 final size:308
Alignment explanation
Indices: 28993361--28994108 Score: 959
Period size: 305 Copynumber: 2.4 Consensus size: 308
28993351 AACTCTGTAT
* * *
28993361 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* * * * * *
28993426 CCGGTCGGAGAGGTAGAATGA-ACAAGCCAAGGAC-CGGCCCGATCCCCCCTGCGTGCTGTCGAT
66 CCGGCCGGAGAGGCAGAAT-ACGCAAGCC-TGGGCTCGGCCCGATCCCCCCT---AG--GT-G--
* * * * *
28993489 CCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
121 -CTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTC
* * * * **
28993554 AACCCACAAAATGAGTGTGCAGGCGCTGAGCCAGCCGGAGAAGCATAATGCGCAAGCCGAGGATC
185 AACCCACAAAACGAGCGTACAGGCACTGAGCCAGCCAAAGAAGCATAATGCGCAAGCCGAGGATC
* * * *
28993619 AGCTCGGTCCCCTTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTGGG
250 AGCTCGGTCCCCCTCTGCGTGATGCCGATCCCGCTGCCACAACCCTCAGTCCGACTGGG
* *
28993678 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* *
28993743 TCGGCCGGAGAGGCAGAATACGCAAGCCTGGGCTCGGCTCGATCCCCCCTAGGTGCTG-T-C-GC
66 CCGGCCGGAGAGGCAGAATACGCAAGCCTGGGCTCGGCCCGATCCCCCCTAGGTGCTGCTGCTGC
*
28993805 AACCCTCGGTCCAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
131 AACCCTCGGTCCAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAA
* * *
28993870 CGAGCGTACGGGCACTGAGCCGGCCAAAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCC
196 CGAGCGTACAGGCACTGAGCCAGCCAAAGAAGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCC
*
28993935 CCTCTGCGTGATGCCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
261 CCTCTGCGTGATGCCGATCCCGCTGCCACAACCCTCAGTCCGACTGGG
* * * * *
28993983 ACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* * * * *
28994048 CCGACTGGAGAGGCAGAATGCGCAAG-CTGGGGATCGGCCCGATCCCCCCTACGTGCTGCTG
66 CCGGCCGGAGAGGCAGAATACGCAAGCCT-GGGCTCGGCCCGATCCCCCCTAGGTGCTGCTG
28994109 ATCCTGCTAC
Statistics
Matches: 379, Mismatches: 47, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
304 2 0.01
305 266 0.70
306 2 0.01
307 1 0.00
308 3 0.01
311 1 0.00
312 2 0.01
314 1 0.00
316 4 0.01
317 97 0.26
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (308 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATACGCAAGCCTGGGCTCGGCCCGATCCCCCCTAGGTGCTGCTGCTGC
AACCCTCGGTCCAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAA
CGAGCGTACAGGCACTGAGCCAGCCAAAGAAGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCC
CCTCTGCGTGATGCCGATCCCGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:28994183 original size:26 final size:26
Alignment explanation
Indices: 28994142--28994192 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
28994132 TCGGTCTGAT
*
28994142 CTTAGACTAGGAATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
28994168 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
28994193 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28994550 original size:26 final size:26
Alignment explanation
Indices: 28994521--28994573 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28994511 CCAGTTCGAT
28994521 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
28994547 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
28994573 C
1 C
28994574 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:28994916 original size:26 final size:26
Alignment explanation
Indices: 28994887--28994939 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28994877 CCGATCCGAT
28994887 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
28994913 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
28994939 C
1 C
28994940 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:28994991 original size:366 final size:366
Alignment explanation
Indices: 28994331--28995711 Score: 1008
Period size: 366 Copynumber: 3.8 Consensus size: 366
28994321 CTGCTGCCAC
* *
28994331 AACCCTTGATCCGACTGGGGTTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * *
28994396 CAAGCGTGCGGGCACTCAGCTGGCAGGAGAGGTAAAATGCGTAAGCCGGGGATCAGCCTAGTCCC
66 CAAGCGTCCGGGCACTCAGCTGGCAGGAAAGGTAAAATACGCAAGCCGGGGATCAGCCCAGTCCC
* * * * * *
28994461 CCCTACATATGACCGATCCTACTGTTGGTCTTACTATCGCAACCCTCGGTCCAGTTCGATCTTAG
131 CCCTACATACGACCGATCCTACTGCTGGTCCTACTATCACAACCCTCGATCCAGTCCGATCTTAG
*
28994526 ACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
196 ACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
* * * * * *
28994591 ATGAATGTGTAGGTGCTTAGTCGGTCGAAGAGGCAGAATGCATAAGTC-GGGGATCGGCTCGATC
261 ACGAATGTGCAGGCGCTGAGCCGGTCGAAGAGGCAGAATGCACAAG-CAGGGGATCGGCTCGATC
28994655 CCCTCTACGTGCTGCCGATCCTGCTGCTGGTCCTACTACTGT
325 CCCTCTACGTGCTGCCGATCCTGCTGCTGGTCCTACTACTGT
*
28994697 AACCCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * *
28994762 CGAGTGTCCGGGCACTCAGCTGGCAGGAAAGGTAGAATACGCAAGCTGGGGATC-GACCCAGTCC
66 CAAGCGTCCGGGCACTCAGCTGGCAGGAAAGGTAAAATACGCAAGCCGGGGATCAG-CCCAGTCC
** * *** * *
28994826 CCCCTATGTGCGGTTGATCCTACTGCTGGTCCTGCTGTCACAACCCTCGATCC-GATCCGATCTT
130 CCCCTACATACGACCGATCCTACTGCTGGTCCTACTATCACAACCCTCGATCCAG-TCCGATCTT
* *
28994890 AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC-TCTGTATGCCTAAGTCAACCCAT
194 AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCAC
* * * * * * *
28994954 GAAACGAGTGTGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCAGGGGATCGGTTCGG
258 GAAACGAATGTGCAGGCGCTGAGCCGGTCGAAGAGGCAGAATGCACAAGCAGGGGATCGGCTCGA
* * ***
28995019 TCCCC-CT-C---C-G-CG-TGCTG-T-C-GGT-TTCAC-AGCCAC
323 TCCCCTCTACGTGCTGCCGATCCTGCTGCTGGTCCT-ACTA-CTGT
* * *
28995052 AACCCTC-AGTCC-AGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGA
1 AACCCTCGA-TCCGA-CTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
** ** ** * * * * * * * * *
28995115 AACGGGCGTGTGGGTGCTCAG-TCGGTCA-G-AGGCGCAGAATGCACAAGTCGGGGATCGGCTCG
64 AACAAGCGTCCGGGCACTCAGCT-GG-CAGGAAAG-GTAAAATACGCAAGCCGGGGATCAGCCCA
* * * * * * * **
28995177 GT-CCCCCTGCATGCTACCGATCCTA---CT-G--C--C-GT---AGCCCTCGGTCCGGTATGAT
126 GTCCCCCCTACATACGACCGATCCTACTGCTGGTCCTACTATCACAACCCTCGATCCAGTCCGAT
** * * * * *
28995229 CTTAGACTGGGAATGAACTCTATATGCTTAAAC-TGGGGACGAACTCCGTATGCCTAAGTCAACC
191 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACC
* * * * * * * * * *
28995293 CACGAAACAAATGTG-AGGTCGCTCAGACGGCCGAAGAGGCATAATGCGCAAGCCGAGGATTAGA
255 CACGAAACGAATGTGCAGG-CGCTGAGCCGGTCGAAGAGGCAGAATGCACAAGCAGGGGA-TCGG
* * * * * * ** * * *
28995357 C-CAATCCTCCTCTGCGTGCTGTCAACCCTGCTACCAGTGCTGCTAC-GAC
318 CTCGATCC-CCTCTACGTGCTGCCGATCCTGCTGCTGGTCCTACTACTG-T
* * * * * * *
28995406 AACCCTCGGTCC-AGCGGGGGCTTCGACATTGAATGAACTCCCTATGCCTAAGCCAACCAACGAA
1 AACCCTCGATCCGA-CTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
** * ** * * ** * * ** * * **
28995470 ATGAGCGTGCGGGCACTCAGCCAGCCGGAGAGACAGACTGTGCTAGCCGGGGATCAGTCTGGTCC
65 ACAAGCGTCCGGGCACTCAGCTGGCAGGAAAGGTAAAATACGCAAGCCGGGGATCAGCCCAGTCC
*** * * * * * * * *
28995535 CCCCTGGGTGCTACCGATCCTGCTGCTGGTCCTACTGTCGCAACCTTCGAT-CTGATCCGATCAT
130 CCCCTACATACGACCGATCCTACTGCTGGTCCTACTATCACAACCCTCGATCCAG-TCCGATCTT
*
28995599 AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
194 AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACG
** * * * * *
28995664 AAACGAGCGTGCAGGTGCTTAACCGGTCGGAGAGGCAGAATGCGCAAG
259 AAACGAATGTGCAGGCGCTGAGCCGGTCGAAGAGGCAGAATGCACAAG
28995712 TCGAGGATTG
Statistics
Matches: 807, Mismatches: 156, Indels: 103
0.76 0.15 0.10
Matches are distributed among these distances:
341 3 0.00
342 118 0.15
343 6 0.01
344 2 0.00
345 3 0.00
346 1 0.00
348 2 0.00
349 1 0.00
350 2 0.00
351 5 0.01
352 1 0.00
353 2 0.00
354 123 0.15
355 124 0.15
356 4 0.00
357 1 0.00
358 6 0.01
359 3 0.00
360 1 0.00
361 2 0.00
363 1 0.00
364 3 0.00
365 7 0.01
366 278 0.34
367 104 0.13
368 4 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (366 bp):
AACCCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CAAGCGTCCGGGCACTCAGCTGGCAGGAAAGGTAAAATACGCAAGCCGGGGATCAGCCCAGTCCC
CCCTACATACGACCGATCCTACTGCTGGTCCTACTATCACAACCCTCGATCCAGTCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
ACGAATGTGCAGGCGCTGAGCCGGTCGAAGAGGCAGAATGCACAAGCAGGGGATCGGCTCGATCC
CCTCTACGTGCTGCCGATCCTGCTGCTGGTCCTACTACTGT
Found at i:28995985 original size:159 final size:156
Alignment explanation
Indices: 28995621--28996042 Score: 434
Period size: 158 Copynumber: 2.7 Consensus size: 156
28995611 AACTCCGTAT
* *
28995621 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTG-TTAG
* * * * * *
28995686 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCCTGATTTCCCCCTACGTGCTGTCAATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATTT-CCCCTACGTGCTGTCAACC
* *
28995751 CTGCTACGCAACCCTCGATCCGATTCGA
129 CTGCTACACAACCCTCGATCCGACTCGA
* * * * *
28995779 TCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCC-TCAAAACGAGCGTGCTGGTGTTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAAACGAGCGTGCAGGTGTT-A
* * * * ** *
28995843 GCCGACCGAAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGATCCTT-TTCTGCGTGCTGTCAA
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT--TTCCCCTACGTGCTGTCAA
* * * * *
28995907 CCCTGCTGCCACAACCCTCGGTCTGACTGGG
127 CCCTGCT-ACACAACCCTCGATCCGACTCGA
* * * * *
28995938 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCATGAAACGACCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGTT-AG
* * * *
28996003 CTGGCTGGAGAGGGAGGATGCGCAAGCCGGGGATCGGCCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
28996043 AGTCCCCCCT
Statistics
Matches: 213, Mismatches: 45, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 107 0.50
159 101 0.47
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGTTAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATTTCCCCTACGTGCTGTCAACCCT
GCTACACAACCCTCGATCCGACTCGA
Found at i:28996126 original size:26 final size:26
Alignment explanation
Indices: 28996097--28996149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
28996087 CCGGTCTGAT
28996097 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCTGCATG
* * *
28996123 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGCATG
28996149 C
1 C
28996150 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGCATG
Found at i:28996418 original size:159 final size:160
Alignment explanation
Indices: 28996122--28996866 Score: 668
Period size: 159 Copynumber: 4.7 Consensus size: 160
28996112 AACTCTGCAT
* ** * * * *
28996122 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * ** * * *
28996187 CCGATCGGGGAGGCAAAATGCGCAAGCCGAGGATCGGCTTGATCCCCCACTGTGTGCTGTCGATC
66 CTGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
** * *
28996252 CTGCTGCCACAATCCTCGGTCTGGTCT-GA
131 CCACTGCCACAACCCTCGATCTGGTCTGGA
* * * * *
28996281 TCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * *
28996346 CT-AGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGGT
66 CTGA-CCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
28996410 CCCACTGCCACAACCCTCAATCT-GACTGGG
130 CCCACTGCCACAACCCTCGATCTGGTCTGGA
* *
28996440 GCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCA
* ** * * *
28996504 ACTGATTGGAGAGGCAGAATGCGCAAGTC-AGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCGA
65 GCTGACCGGAGAGGCATAATGCGCAAGCCGA-GGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGA
* * * * *
28996567 TCCTAATGTCGCAACCCTCGATCCGGTCT-GA
129 TCCCACTGCCACAACCCTCGATCTGGTCTGGA
* * * * * * *
28996598 TCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * ** * * * ** *
28996663 CCGGCCGGAGAGATATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTACCGGTC
66 CTGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * *
28996728 CCGCTACCACAACCCTCGAT-TCGG-CTGGG
131 CCACTGCCACAACCCTCGATCT-GGTCTGGA
* * *
28996757 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GACGTGCAGGCCCTC
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAG-CGTGCGGGCACTC
* * ** * * * *
28996820 AACCGGTCGGAGAGGTAGAATGCACAAGCCG-GAGATCGACCCGGTCC
64 AGCTGACCGGAGAGGCATAATGCGCAAGCCGAG-GATCGGCCCGGTCC
28996867 ACCCCACGTG
Statistics
Matches: 476, Mismatches: 96, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 130 0.27
159 342 0.72
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (160 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG
CTGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
CCACTGCCACAACCCTCGATCTGGTCTGGA
Found at i:28996422 original size:502 final size:500
Alignment explanation
Indices: 28995564--28996625 Score: 1279
Period size: 502 Copynumber: 2.1 Consensus size: 500
28995554 CTGCTGCTGG
* * * * * * * *
28995564 TCCTACTGTCGCAACCTTCGATCTGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTAATGCCGCAACCCTCGATCCGGTCTGATCTTAGACT-GGAATGAACTCCGCATGCTTAGAC
* * * * *
28995629 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTTAACCGGTCGG
65 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAACCGATCGG
* * * * *
28995694 AGAGGCAGAATGCGCAAGTCGAGGATTGGCCTGATTTCCCCCTACGTGCTGTCAATCCTGCTACG
130 AGAGGCAAAATGCGCAAGCCGAGGATCGGCCTGATTCCCCCCTACGTGCTGTCAATCCTGCTACA
* * *
28995759 CAACCCTCGATCCGATTCGATCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCTCAAA
195 CAACCCTCGATCCGATTCGATCTTAGACAAGGAATGAACTCCATATGCATAAGTCAACCCACAAA
* * * * * *
28995824 ACGAGCGTGCTGGTGTTGAGCCGACCGAAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGATCC
260 ACGAGCGTGCGGGCGCTGAGCAGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATCC
*** * ** *
28995889 TTTTCTGCGTGCTGTCAACCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATG
325 CCCTCTGCGTGCTGTCAACCCTACTGCCACAACCCTCAATCTGACTGGGGCTTAGACATGGAATA
* * ** * * *
28995954 AACTCCCTATGCCTAAGCCATCCCATGAAACGACCGTGCGGGCGTTCAGCTGGCTGGAGAGGGAG
390 AACTCCCTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCACTCAACTGACTGGAGAGGCAG
* * *
28996019 GATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTACTGTCGA
455 AATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCATACTGTCGA
** * * *
28996065 TCCTGTTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGCATGCTTAGAC
1 TCCTAATGCCGCAACCCTCGATCCGGTCTGATCTTAGACT-GGAATGAACTCCGCATGCTTAGAC
* * * * *
28996130 -TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCGATCG
65 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAACCGATCG
* * ** *
28996194 GGGAGGCAAAATGCGCAAGCCGAGGATCGGCTTGA-TCCCCCACTGTGTGCTGTCGATCCTGCTG
129 GAGAGGCAAAATGCGCAAGCCGAGGATCGGCCTGATTCCCCC-CTACGTGCTGTCAATCCTGCT-
* * * * * **
28996258 CCACAATCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCA
192 ACACAACCCTCGATCCGATTC-GATCTTAGACAAGGAATGAACTCCATATGCATAAGTCAACCCA
* * * *
28996322 CGAAATGAGCGTGCGGGCGCTGAGCTAG-CCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCTC
256 CAAAACGAGCGTGCGGGCGCTGAGC-AGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCC
* **
28996386 GGTCCCCCTCTGCGTGCTGTCGGTCCC-ACTGCCACAACCCTCAATCTGACTGGGGCTTAGACAT
320 GATCCCCCTCTGCGTGCTGTC-AACCCTACTGCCACAACCCTCAATCTGACTGGGGCTTAGACAT
* * *
28996450 GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACTGATTGGAG
384 GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCACTCAACTGACTGGAG
* * *
28996515 AGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGA
449 AGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCATACTGTCGA
* *
28996567 TCCTAATGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGC
1 TCCTAATGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGG-AATGAACTCCGCATGC
28996626 CTAAGTCAAC
Statistics
Matches: 468, Mismatches: 86, Indels: 13
0.83 0.15 0.02
Matches are distributed among these distances:
500 6 0.01
501 156 0.33
502 302 0.65
503 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (500 bp):
TCCTAATGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGAATGAACTCCGCATGCTTAGACA
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAACCGATCGGA
GAGGCAAAATGCGCAAGCCGAGGATCGGCCTGATTCCCCCCTACGTGCTGTCAATCCTGCTACAC
AACCCTCGATCCGATTCGATCTTAGACAAGGAATGAACTCCATATGCATAAGTCAACCCACAAAA
CGAGCGTGCGGGCGCTGAGCAGACCGAAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATCCC
CCTCTGCGTGCTGTCAACCCTACTGCCACAACCCTCAATCTGACTGGGGCTTAGACATGGAATAA
ACTCCCTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCACTCAACTGACTGGAGAGGCAGA
ATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCATACTGTCGA
Found at i:28996699 original size:317 final size:316
Alignment explanation
Indices: 28996145--28996942 Score: 965
Period size: 317 Copynumber: 2.5 Consensus size: 316
28996135 ATGAACTCTG
* * * * * * * *
28996145 TATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCGATCGGGGAGGCAAAATGCGC
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGC
** * * * * *
28996210 AAGCCGAGGATCGGCTTGATCCCCCACTGTGTGCTGTCGATCCTGCTGCCACAATCCTCGGTCTG
66 AAGCCG-GGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGTCGCAATCCTCGGTCCG
* * *
28996275 GTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGC
129 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGC
* * * * * *
28996340 GCTGAGCTAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTG
194 ACTGAGCCAGCCGAAGAGACATAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTA
* *
28996405 TCGGTCCCACTGCCACAACCCTCAA-TCTGACTGGGGCTTAGACATGGAATAAACTCCC
259 CCGGTCCCACTACCACAACCCTCAATTC-GACTGGGGCTTAGACATGGAATAAACTCCC
* *
28996463 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACTGATTGGAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGC
* * ** * *
28996528 AAGTCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCTAATGTCGCAACCCTCGATCCGG
66 AAG-CCGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAATCCTCGGTCCGG
* * *
28996593 TCTGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCA
130 TCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCA
* * * * *
28996658 CTGAGCCGGCCGGAGAGATATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTAC
195 CTGAGCCAGCCGAAGAGACATAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTAC
* * * *
28996723 CGGTCCCGCTACCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCC
260 CGGTCCCACTACCACAACCCTCAATTCGACTGGGGCTTAGACATGGAATAAACTCCC
* * * * *
28996780 TATGCCTAAGCCAACCCACGAAATG-GACGTGCAGGCCCTCAACCGGTCGGAGAGGTAGAATGCA
1 TATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCG
* * * * *
28996844 CAAGCCGGAGATCGACCCGGTCCACCCC-ACGTGCTGCCAATCCTGCTGTCGTAATCCTCGGTCC
65 CAAGCCGG-GATCGGCCCGGTCC-CCCCTGCGTGCTGTCGATCCTGCTGTCGCAATCCTCGGTCC
** *
28996908 AATCCGATCTTAGA-TCGGGAATGAACTCCGTATGC
128 GGTCTGATCTTAGACT-GGGAATGAACTCCGTATGC
28996943 TTAGACTGGG
Statistics
Matches: 406, Mismatches: 68, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
316 5 0.01
317 320 0.79
318 79 0.19
319 2 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (316 bp):
TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGC
AAGCCGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAATCCTCGGTCCGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCAC
TGAGCCAGCCGAAGAGACATAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACC
GGTCCCACTACCACAACCCTCAATTCGACTGGGGCTTAGACATGGAATAAACTCCC
Found at i:28996945 original size:26 final size:26
Alignment explanation
Indices: 28996916--28996968 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
28996906 CCAATCCGAT
*
28996916 CTTAGA-TCGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
28996942 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
28996968 C
1 C
28996969 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:28998177 original size:26 final size:26
Alignment explanation
Indices: 28998136--28998188 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
28998126 CTGGTCCAAT
*
28998136 CTTAGACTGTGAATGAACTTC-GTATG
1 CTTAGACTGGGAATGAAC-TCAGTATG
*
28998162 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
28998188 C
1 C
28998189 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:28998458 original size:355 final size:361
Alignment explanation
Indices: 28997975--28998658 Score: 789
Period size: 367 Copynumber: 1.9 Consensus size: 361
28997965 GGTCTGATTG
* *
28997975 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTAAGGACACTC
1 GGGCTTACACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGACGTAAGGACACTC
* * * * *
28998040 GGTCGGCTGGTGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCTTACATGCTGTCGAT
66 AGTCGGCTGGAGAGGCAGAATGCCCAAGCCGAGGACCGGCCCGATCCCCCTTACATGCTGTCGAT
* * * * *
28998105 C-CTACT-GT-C-G-C-AACCTTCGGTCTGGTCCAATCTTAGACTGTGAATGAACTTCGTATGCT
131 CTCTACTGGTCCTGACTAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCT
* ** * * *
28998164 TAGAC-TGGGGATGAACTCAGTATGCCTAAGTCAACCCATAAAATGAGGGTACGGGCGCTCAGCC
196 TAGACAT-GGAATGAACTCAGTATGCCTAACCCAACCCACAAAACGAGCGTACGGGCGCTCAGCC
* * * *
28998228 AGTCGAAGAGGCATAATGTGTAAGCCGGGGATCAG-CCCGATCCCCCTCC-GTGTCCTGTCGATC
260 AATCGAAGAGGCAGAATGCGCAAGCCGGGGA-CAGACCCGAT-CCCCTCCTGTGTCCTGTCGATC
28998291 CCGTTGTCGCTCCTGCTACCACAACCCTCAGTTCGGCTA
323 CCGTTGTCGCTCCTGCTACCACAACCCTCAGTTCGGCTA
* ** ***
28998330 GGGCTTACACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAAC-GAGCGTGTGGGTGCT
1 GGGCTTACACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGA-CGTAAGGACACT
* * * * *
28998394 CAGTC-GATCGGAGAGGCAGAATGCCCAAGTCGAGGATCGGCCCGATCCCTCC-TGCGTGCTGTC
65 CAGTCGGCT-GGAGAGGCAGAATGCCCAAGCCGAGGACCGGCCCGATCCC-CCTTACATGCTGTC
* * **
28998457 GATCTTGCTTCTGGTCCTGCTACTGTAACCCTCAGTTTGATCTGATCTTAGACTGGGAATGAACT
128 GATC-T-CTACTGGTCCTG--AC--TAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACT
* *
28998522 CCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTATGGGC
187 CCGTATGCTTAGACATGGAATGAACTCAGTATGCCTAACCCAACCCACAAAACGAGCGTACGGGC
* * * *
28998587 GCTCAGCCAATCGGAGAGGCAGAATGCGCAAGTCGGGGACTGACCCGATCCCCTCCTGTGTGCTG
252 GCTCAGCCAATCGAAGAGGCAGAATGCGCAAGCCGGGGACAGACCCGATCCCCTCCTGTGTCCTG
28998652 TCGATCC
317 TCGATCC
28998659 TGCCACCGCA
Statistics
Matches: 268, Mismatches: 43, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
354 4 0.01
355 104 0.39
356 2 0.01
358 4 0.01
359 2 0.01
360 1 0.00
361 1 0.00
364 1 0.00
366 9 0.03
367 139 0.52
368 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (361 bp):
GGGCTTACACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGACGTAAGGACACTC
AGTCGGCTGGAGAGGCAGAATGCCCAAGCCGAGGACCGGCCCGATCCCCCTTACATGCTGTCGAT
CTCTACTGGTCCTGACTAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACATGGAATGAACTCAGTATGCCTAACCCAACCCACAAAACGAGCGTACGGGCGCTCAGCCA
ATCGAAGAGGCAGAATGCGCAAGCCGGGGACAGACCCGATCCCCTCCTGTGTCCTGTCGATCCCG
TTGTCGCTCCTGCTACCACAACCCTCAGTTCGGCTA
Found at i:28998541 original size:26 final size:26
Alignment explanation
Indices: 28998503--28998555 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
28998493 TTGATCTGAT
28998503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28998529 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
28998555 C
1 C
28998556 CTAACCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28998830 original size:159 final size:159
Alignment explanation
Indices: 28998529--28999024 Score: 388
Period size: 159 Copynumber: 3.1 Consensus size: 159
28998519 ACTCCGTATG
* * *
28998529 CTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACAAAACGAGCGTATGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGCATGCCTAACCCAACCCACAAAACAAGCGTATGGGCACTCAGC
* *
28998594 CAATCGGAGAGGCAGAATGCGCAAGTCGGGGACTGACCCGATCCCCTCCTGTGTGCTGTCGATCC
66 CAATCGGAGAGGCAGAATGCGCAAGTCGGGGACAGACCCGATCCCCTCCTCTGTGCTGTCGATCC
* *
28998659 TGCCACCGCAACCCTCGATCCAGTCCGAT
131 CGCCACCACAACCCTCGATCCAGTCCGAT
* ** * * * *
28998688 CTTAGAC-TAGGAATGAACTTCGCATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGCATGCCTAACCCAACCCACAAAACAAGCGTATGGGCACTCAG
* * * *
28998752 CCGATTGGAGGGGCATAATGCGCAAGTCGGGGACCAG-CCCGATCCCC-CTCTCTGTGCTGTCGA
65 CCAATCGGAGAGGCAGAATGCGCAAGTCGGGGA-CAGACCCGATCCCCTC-CTCTGTGCTGTCGA
** * ** ** *
28998815 TCCCGCTGCCACAACCCTCGGTCTGGTTGGGGT
128 TCCCGCCACCACAACCCTCGATCCAG-TCCGAT
* * * * ** * *
28998848 -TTAAACATGGAATGAACTCC-CTATGCCTAAACCAACCCACGAAAC-GGACGTGCGGTCGCTCA
1 CTTAGACATGGAATGAACTCCGC-ATGCCTAACCCAACCCACAAAACAAG-CGTATGGGCACTCA
* * * * *
28998910 GCCGACCGGAGAGGCAGAATGCACAAG-CTGGGGATC-GGCCCAATCCCC-CCTGC-GTGCTG-C
64 GCCAATCGGAGAGGCAGAATGCGCAAGTC-GGGGA-CAGACCCGATCCCCTCCT-CTGTGCTGTC
* *** *
28998970 TGATCCTGCTGTCGCAACCCTCGATCC-GATCCGAT
126 -GATCCCGCCACCACAACCCTCGATCCAG-TCCGAT
*
28999005 CTTAGA-TTGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
28999025 TATATGCTTA
Statistics
Matches: 270, Mismatches: 54, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 6 0.02
158 50 0.19
159 208 0.77
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGCATGCCTAACCCAACCCACAAAACAAGCGTATGGGCACTCAGC
CAATCGGAGAGGCAGAATGCGCAAGTCGGGGACAGACCCGATCCCCTCCTCTGTGCTGTCGATCC
CGCCACCACAACCCTCGATCCAGTCCGAT
Found at i:28999056 original size:26 final size:26
Alignment explanation
Indices: 28999005--28999056 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
28998995 CCGATCCGAT
* *
28999005 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
28999031 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28999057 TGTTTGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29000082 original size:159 final size:156
Alignment explanation
Indices: 28999752--29000252 Score: 438
Period size: 159 Copynumber: 3.2 Consensus size: 156
28999742 AACTCCGTAT
* * *
28999752 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAATGTGCGGGCTCAGCC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCTCAGCC
* * *
28999817 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCTG
66 AGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCCG
** * *
28999882 CTGTCGCAACCCTCAGTCCGATCTGA
131 CTACCACAACCCTCAGTCCGAGCTGA
* * * * *
28999908 TCTTAGAC-TGTGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGG--CTCA
* * * * * * *
28999972 GTCAGTCGAAGAGGCATAATGTGCAAGTCGGGGATC-AGCCTAGTCTCCCTCTACGTGCTGTCGG
63 GCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCAGTC-CCCCCTACGTGCTGTCGA
* *
29000036 TCCCGCTACCACAACCCTCGGTCC-AGCTGGG
126 TCCCGCTACCACAACCCTCAGTCCGAGCT-GA
* * * * * *
29000067 GCTTAGACAAGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGACGAGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGC-GG-GCTCAG
* * * * ** * * **
29000132 CC-GGCTAGAGAGGCAGATTGTGCAAGCCAAGGATCGACCCAATCCCCCCTGCGTGCTACCGATC
64 CCAGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATC
** * * *
29000196 CTACTGCCACAACCCTCGGTTCG-GTCTGA
128 CCGCTACCACAACCCTCAGTCCGAG-CTGA
* *
29000225 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29000253 TTAGATTGGG
Statistics
Matches: 271, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
155 2 0.01
156 48 0.18
157 1 0.00
158 102 0.38
159 113 0.42
160 4 0.01
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCTCAGCC
AGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCCG
CTACCACAACCCTCAGTCCGAGCTGA
Found at i:29000262 original size:26 final size:26
Alignment explanation
Indices: 29000226--29000278 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29000216 TCGGTCTGAT
29000226 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
29000252 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
29000278 C
1 C
29000279 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:29000493 original size:20 final size:20
Alignment explanation
Indices: 29000468--29000517 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
29000458 AGGGATTGAC
29000468 CCGATCC-ACCCTGCGTGCTA
1 CCGATCCTA-CCTGCGTGCTA
29000488 CCGATCCTACCTGCGTGCTA
1 CCGATCCTACCTGCGTGCTA
29000508 CCGATCCTAC
1 CCGATCCTAC
29000518 TGTCGCAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.16, C:0.44, G:0.18, T:0.22
Consensus pattern (20 bp):
CCGATCCTACCTGCGTGCTA
Found at i:29000580 original size:26 final size:26
Alignment explanation
Indices: 29000544--29000596 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29000534 TCGGTTCAAA
29000544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29000570 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29000596 C
1 C
29000597 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29001955 original size:157 final size:156
Alignment explanation
Indices: 29001449--29002054 Score: 590
Period size: 159 Copynumber: 3.9 Consensus size: 156
29001439 CTCCGTACGG
* * * *
29001449 TTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
29001514 AGTCGGAA-AGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCATGCGTGCTGTCGATCC
66 GGTC-GAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCC-TGCGTGCTGTCGATCC
* * ** * *
29001578 TGCTACCGTAACCTTCGGTCTGGTCTAATC
129 CGCTGCCACAACCTT-GGTCTGG-CTGAGC
* * *
29001608 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * * * * *
29001672 TGGCCGAAGAGGCATAATAAGCAAGCCGGGGATCGACCCGGTCCCTCTCTACCTGCTATCGATCT
65 CGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCC-CCCTGCGTGCTGTCGATCC
* * *
29001737 CGTTGCCACAACCCTCGGTCCGGCTTGAGC
129 CGCTGCCACAA-CCTTGGTCTGGC-TGAGC
* * * * * * * *
29001767 TTACATATGG-ATGAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCGTGTGGGTGCTCATCT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * ** *
29001831 GGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATCCCA
66 GGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCG
*
29001896 CTGCCACAACCTTGGTCTGGCTGGGGC
131 CTGCCACAACCTTGGTCTGGCT-GAGC
* * * * *
29001923 TTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
29001988 GATCGAAGAGGCAGAATGTGCAAGTCGAGAATCGGCCTGGT-CCCCCTGCGTGCTGTCTATCCTG
66 GGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCG
29002052 CTG
131 CTG
29002055 TCGCAACCCT
Statistics
Matches: 362, Mismatches: 77, Indels: 19
0.79 0.17 0.04
Matches are distributed among these distances:
155 1 0.00
156 44 0.12
157 104 0.29
158 85 0.23
159 122 0.34
160 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCG
CTGCCACAACCTTGGTCTGGCTGAGC
Found at i:29002070 original size:157 final size:157
Alignment explanation
Indices: 29001449--29002097 Score: 594
Period size: 157 Copynumber: 4.1 Consensus size: 157
29001439 CTCCGTACGG
* * * *
29001449 TTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* *
29001514 -AGTCGGAA-AGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCATGCGTGCTGTCGATC
66 GA-TC-GAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCC-TGCGTGCTGTCGATC
* ** * * *
29001577 CTGCTACCGTAACCTTCGGTCTGGTCTAATC
128 CTGCTGCCACAACCCTCGGTCTGG-CTGAGC
* * *
29001608 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** * * * * * *
29001672 TGGCCGAAGAGGCATAATAAGCAAGCCGGGGATCGACCCGGTCCCTCTCTACCTGCTATCGAT-C
65 CGATCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCC-CCCTGCGTGCTGTCGATCC
* *
29001736 TCGTTGCCACAACCCTCGGTCCGGCTTGAGC
129 T-GCTGCCACAACCCTCGGTCTGGC-TGAGC
* * * * * * * *
29001767 TTACATATGG-ATGAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCGTGTGGGTGCTCATCT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** **
29001831 GGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATCCCA
66 GATCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTG
* *
29001896 CTGCCACAA-CCTTGGTCTGGCTGGGGC
131 CTGCCACAACCCTCGGTCTGGCT-GAGC
* * * * *
29001923 TTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
29001988 GATCGAAGAGGCAGAATGTGCAAGTCGAGAATCGGCCTGGT-CCCCCTGCGTGCTGTCTATCCTG
66 GATCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTG
* * * * *
29002052 CTGTCGCAACCCTCGGTCTGATCCGATC
131 CTGCCACAACCCTCGGTCTG-GCTGAGC
29002080 TTAGAC-TGGGAATGAACT
1 TTAGACAT-GGAATGAACT
29002098 TCGTATGCTG
Statistics
Matches: 395, Mismatches: 82, Indels: 28
0.78 0.16 0.06
Matches are distributed among these distances:
155 1 0.00
156 49 0.12
157 129 0.33
158 89 0.23
159 124 0.31
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GATCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCTGGCTGAGC
Found at i:29002124 original size:26 final size:26
Alignment explanation
Indices: 29002091--29002157 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
29002081 TAGACTGGGA
29002091 ATGAACTTCGTATGCTGAGATTAGGG
1 ATGAACTTCGTATGCTGAGATTAGGG
*
29002117 ATGAACTTCGTATGCTGAGATTGGGG
1 ATGAACTTCGTATGCTGAGATTAGGG
*
29002143 ATGAACTTCATATGC
1 ATGAACTTCGTATGC
29002158 CTAAGTCAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.31
Consensus pattern (26 bp):
ATGAACTTCGTATGCTGAGATTAGGG
Found at i:29002846 original size:159 final size:158
Alignment explanation
Indices: 29002510--29002865 Score: 399
Period size: 158 Copynumber: 2.2 Consensus size: 158
29002500 AACTCCGTAT
* * * ** *
29002510 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTTAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCACTGAA
* * * *
29002575 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCAATCCCCCCTGCGTGCTGTCGATCT
66 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCAATCCCCCCTGCGTGCTGTCGATCC
* * *
29002640 TGCTGTCGCAACCCTCGGTCCAGTTCGA
131 TGCTGCCACAACCCTCGGTCCAGCTCGA
* * * * * * *
29002668 TCTTAGGCTAGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAATGAGTGTACGGGCACTGAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCACTGAA
* ** ** *
29002733 CC-GACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGT
66 CCAG-CCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCAATCCCCC-CTGCGTGCTGTCGAT
*** * *
29002797 CCTGCTGCCACAACCCTCGGTTTGGCTGGG
129 CCTGCTGCCACAACCCTCGGTCCAGCTCGA
*
29002827 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACC
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACC
29002866 TACGAAACAG
Statistics
Matches: 159, Mismatches: 37, Indels: 3
0.80 0.19 0.02
Matches are distributed among these distances:
157 1 0.01
158 90 0.57
159 68 0.43
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCACTGAA
CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCAATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCAGCTCGA
Found at i:29002885 original size:159 final size:158
Alignment explanation
Indices: 29002510--29002973 Score: 425
Period size: 159 Copynumber: 2.9 Consensus size: 158
29002500 AACTCCGTAT
* * * *
29002510 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGTGCTTA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAGAGC-TGCGGGCGCTCA
* ** **
29002574 ACC-AGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCAATCCCCCCTGCGTGCTGTCGAT
65 ACCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
* * * *
29002638 CTTGCTGTCGCAACCCTCGGTCCAGTTCGA
129 CCTGCTGCCACAACCCTCGGTCCAGCTCGA
* * * * * * * *
29002668 TCTTAGGCTAGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAA-TGAG-TGTACGGGCACTG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAGAGCTG--CGGGCGCTC
* * * *
29002731 AACCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGG
64 AACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA
*** * *
29002796 TCCTGCTGCCACAACCCTCGGTTTGGCTGGG
128 TCCTGCTGCCACAACCCTCGGTCCAGCTCGA
* * *
29002827 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACAG-GCATGCGGGCGCTCA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAGAGC-TGCGGGCGCTCA
* ** * * * * ** * *
29002891 GCCGATTGGAGAGGCAGAATGTGCAAGCCGAGGATTGGCCTGGTCCCCCCCACGTGCTGCCAATC
65 ACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* *
29002956 CTGTTGCCGCAACCCTCG
130 CTGCTGCCACAACCCTCG
29002974 ATCCGGTCCG
Statistics
Matches: 242, Mismatches: 56, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
158 115 0.48
159 122 0.50
160 1 0.00
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAGAGCTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCAGCTCGA
Found at i:29003042 original size:26 final size:26
Alignment explanation
Indices: 29002992--29003042 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29002982 CGGTTCGATC
* **
29002992 TTAGATTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
29003018 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
29003043 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:29009808 original size:35 final size:34
Alignment explanation
Indices: 29009759--29009828 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 34
29009749 CAAGTACCAG
29009759 CACCCATCACACATCATGTGCGCACACCCCCCGGT
1 CACCCATCACACATCATGTGCGCACA-CCCCCGGT
**
29009794 CACCCATCGTACATCATGTGCGCACACCCCCGGT
1 CACCCATCACACATCATGTGCGCACACCCCCGGT
29009828 C
1 C
29009829 CCCCCAATCG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 9 0.27
35 24 0.73
ACGTcount: A:0.21, C:0.47, G:0.16, T:0.16
Consensus pattern (34 bp):
CACCCATCACACATCATGTGCGCACACCCCCGGT
Found at i:29010768 original size:157 final size:155
Alignment explanation
Indices: 29010490--29011019 Score: 471
Period size: 157 Copynumber: 3.4 Consensus size: 155
29010480 CTGCTGCTGG
* * * * *
29010490 TCCCACTGTCGCAACCCTCGGTCCGATCCGTTCTTAGACTGGGAATGAACTCAGTATGCCTAAGG
1 TCCCACTGCCACAACCCTCGGTCCGATCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGC
* *
29010555 CAACCCATGAAACGAGCGTGCGGGCACTCAATCGACCGAAGAGGCAGAATGCGCAAGCC-AGGGA
65 CAACCCATGAAACGGGCGTGTGGGCACTCAATCGA-CGAAGAGGCAGAATGCGCAAGCCGA-GGA
29010619 -CTGGCCCGGTCCCCCCTACATGCTGTCGA
128 TC-GG-CCGGTCCCCCCTACATGCTGTCGA
*** * * * *
29010648 TCTTGCTGCCACAACCTTCGGTCCGATCCGATCTTAGACTAGAATGAACTCCGTATGACTAAGTC
1 TCCCACTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCC
* *
29010713 AACCCACGAAACGGGCGTGTGGATGCTGAGCT-AATC-A-GAA-AGGCATAATGCGCAAGCCGAG
66 AACCCATGAAACGGGCGTGTGG--GC--A-CTCAATCGACGAAGAGGCAGAATGCGCAAGCCGAG
* * *
29010774 GATCGGTCGGTCCCCCCTGCATGCTGTCGG
126 GATCGGCCGGTCCCCCCTACATGCTGTCGA
* * * ** *
29010804 TCCCACTGCCACAACCCTCGATCCG-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 TCCCACTGCCACAACCCTCGGTCCGATC-CGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAG
* * ** * * * * *
29010868 CCAACCTATGAAACGGGCGTGTGGGCGCTCAGCCGGCTGGAGAGGCAGAATGTGCAAGCTGGGGA
64 CCAACCCATGAAACGGGCGTGTGGGCACTCAATCGAC-GAAGAGGCAGAATGCGCAAGCCGAGGA
* ** * *
29010933 TCGACCCATCCCCCCTACGTGTTGTCGA
128 TCGGCCGGTCCCCCCTACATGCTGTCGA
* * * * * * *
29010961 TCCTACTGTCGCAACCGTCTGTCCGATCCGATCTTAGATTGGGAATAAACTCCGTATGC
1 TCCCACTGCCACAACCCTCGGTCCGATCCGATCTTAGACT-GGAATGAACTCCGTATGC
29011020 TTAGATTGGG
Statistics
Matches: 293, Mismatches: 63, Indels: 33
0.75 0.16 0.08
Matches are distributed among these distances:
152 2 0.01
153 2 0.01
155 3 0.01
156 52 0.18
157 185 0.63
158 39 0.13
159 2 0.01
160 1 0.00
161 5 0.02
162 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
TCCCACTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAACGGGCGTGTGGGCACTCAATCGACGAAGAGGCAGAATGCGCAAGCCGAGGATCG
GCCGGTCCCCCCTACATGCTGTCGA
Done.