Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 309 of 402
Found at i:29012176 original size:26 final size:26
Alignment explanation
Indices: 29012147--29012199 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29012137 CCGATTCGAT
*
29012147 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCAGTATG
29012173 CTTAGACATGGAATGAACTCAGTATG
1 CTTAGACATGGAATGAACTCAGTATG
29012199 C
1 C
29012200 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCAGTATG
Found at i:29012643 original size:26 final size:26
Alignment explanation
Indices: 29012603--29012655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29012593 CCGGTCTAAT
29012603 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
29012629 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29012655 C
1 C
29012656 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29012658 original size:270 final size:270
Alignment explanation
Indices: 29012172--29012692 Score: 658
Period size: 270 Copynumber: 1.9 Consensus size: 270
29012162 AACTCCGTAT
* * **
29012172 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* ** * * * * * * *
29012237 TCGGTCGGAGAGGTAGAATACGCAAGCTGGGGATCAGCTCGGTCCCCCCTTTGCGTGCTGTCGAT
66 CCACTCAGAGAGGCAGAAGACACAAGCCGGGGATCAGCTCAGTCCCCCC-TTGCGTGCTGTCCAT
* ** *
29012302 CCTGCTGCCACAACCCTTGGCCCGATCTGATCTTAGACCTAGAATGAACTCTGTATGCTTAGACT
130 CCTGCTACCACAACCCTCAGCCCGATCTAATCTTAGACCTAGAATGAACTCTGTATGCTTAGACT
* * *
29012367 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGGGCTGAGTCGGCCTCG
195 GGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGGGCTGAGTCGGCCTCG
29012432 ATCCGGCTAGG
260 ATCCGGCTAGG
* * *
29012443 GCTT-GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
*
29012507 CCAACT-AGAGAGGCAGAAAGAGCACAAGCCGGGGATCGGAC-CAGTCCCCCC-TGCGTGCTGTC
66 CC-ACTCAGAGAGGCAG-AAGA-CACAAGCCGGGGATCAG-CTCAGTCCCCCCTTGCGTGCTGTC
* * *
29012569 CATCCTGCTACCGCAACCCTCAGCCCGGTCTAATCTTAGA-CTGGGAATGAACT-TCGTATGCTT
127 CATCCTGCTACCACAACCCTCAGCCCGATCTAATCTTAGACCT-AGAATGAACTCT-GTATGCTT
* * *
29012632 AGACTGGTAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGGGCTGAG
190 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGGGCTGAG
29012693 CCGGTGGGAA
Statistics
Matches: 213, Mismatches: 31, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
269 3 0.01
270 178 0.84
271 8 0.04
272 23 0.11
273 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (270 bp):
GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCACTCAGAGAGGCAGAAGACACAAGCCGGGGATCAGCTCAGTCCCCCCTTGCGTGCTGTCCATC
CTGCTACCACAACCCTCAGCCCGATCTAATCTTAGACCTAGAATGAACTCTGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCGTGCGGGGGCTGAGTCGGCCTCGA
TCCGGCTAGG
Found at i:29013699 original size:26 final size:25
Alignment explanation
Indices: 29013659--29013737 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
29013649 GGCTCAAAAT
29013659 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGG-AATGAACTCCGTATG
*
29013685 CTTAGACATGGAATGAACTCCATATG
1 CTTAGAC-TGGAATGAACTCCGTATG
29013711 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
29013737 C
1 C
29013738 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:29014237 original size:26 final size:27
Alignment explanation
Indices: 29014189--29014243 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
29014179 GTTCAATCAT
29014189 AGACTGGGAATGAACTCCCTATG-CTA
1 AGACTGGGAATGAACTCCCTATGCCTA
* **
29014215 AGACTGGGGATGAACTCTGTATGCCTA
1 AGACTGGGAATGAACTCCCTATGCCTA
29014242 AG
1 AG
29014244 TCAACCCACG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCCTATGCCTA
Found at i:29014960 original size:26 final size:26
Alignment explanation
Indices: 29014909--29014961 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29014899 GGATTAAAAT
*
29014909 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29014935 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29014961 C
1 C
29014962 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29016097 original size:159 final size:157
Alignment explanation
Indices: 29015618--29016138 Score: 526
Period size: 159 Copynumber: 3.3 Consensus size: 157
29015608 TCCAGTCCGA
* * *
29015618 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGTGGGCGCTGA
1 TCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTGA
* * * * *
29015682 GCC-ATCCGAAGAGGCATAATGCGCAAGCTTGGGATCGGCCCGATCCCCCTCTACATGCTACCGG
65 GCCGAT-CGAAGAGGCATAAT-CGCAAG-TCGGGATCGGCCCG-TCCCCCTCTACGTGCTGCTGA
**
29015746 TCCCACTGCCACAACCCTCTG-TCTGGCTAGGG
126 TCCCACTGCCACAACCCTC-GATCCAGCTAGGG
** * * *
29015778 -CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA-
1 TCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTGAG
* * * * * * *
29015841 CTG-GCTGGAGTGGCAGAATCGCAAGTCGGGCATCGGCCCGGTCCCCC-ATGCGTGCTG-TCGAT
66 CCGATC-GAAGAGGCATAATCGCAAGTCGGG-ATCGGCCC-GTCCCCCTCTACGTGCTGCT-GAT
** * * * * *
29015903 CCTGCTGCCGCAACCCTCGATCTGATCCA--A
127 CCCACTGCCACAACCCTCGATC-CAGCTAGGG
* * * *
29015933 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCACTGA
1 TCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTGA
29015997 GCCGATCGAAGAGGCATAATCCGCAAGTCGAGGATCGGCCCAGTCCCCCTCTACGTGCTGCTGAT
65 GCCGATCGAAGAGGCATAAT-CGCAAGTCG-GGATCGGCCC-GTCCCCCTCTACGTGCTGCTGAT
29016062 CCCACTGCCACAACCCTCGATCCAGCT-GGG
127 CCCACTGCCACAACCCTCGATCCAGCTAGGG
29016092 TCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
1 TCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
29016139 GGCGTACGGG
Statistics
Matches: 287, Mismatches: 55, Indels: 39
0.75 0.14 0.10
Matches are distributed among these distances:
155 2 0.01
156 81 0.28
157 35 0.12
158 39 0.14
159 127 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (157 bp):
TCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTGAG
CCGATCGAAGAGGCATAATCGCAAGTCGGGATCGGCCCGTCCCCCTCTACGTGCTGCTGATCCCA
CTGCCACAACCCTCGATCCAGCTAGGG
Found at i:29016137 original size:315 final size:315
Alignment explanation
Indices: 29015565--29016137 Score: 861
Period size: 315 Copynumber: 1.8 Consensus size: 315
29015555 AAGAACCCTT
* * * * *
29015565 GGTCCCCCCTGCATGTTGTCGATCCTGCTGCCACAATCATCGGTCCAGTCCGATCTTAGACTAGG
1 GGTCCCCCATGCATGCTGTCGATCCTGCTGCCACAACCATCGATCCAGTCCAATCTTAGACTAGG
*
29015630 AATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGTGGGCGCTGAGCCATCCGAAGAG
66 AATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGTGGGCACTGAGCCATCCGAAGAG
* * *
29015695 GCATAATGCGCAAGCTTGGGATCGGCCCGATCCCCCTCTACATGCTACCGGTCCCACTGCCACAA
131 GCATAATCCGCAAGCTCGGGATCGGCCCGATCCCCCTCTACATGCTACCGATCCCACTGCCACAA
**
29015760 CCCTCTGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
196 CCCTCTGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
29015825 AGCGTGCGGGTGCTCACTGGCTGGAGTGGCAGAATCGCAAGTCGGGCATCGGCCC
261 AGCGTGCGGGTGCTCACTGGCTGGAGTGGCAGAATCGCAAGTCGGGCATCGGCCC
* * * * *
29015880 GGTCCCCCATGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGAT-CTGATCCAATCTTAGACTGG
1 GGTCCCCCATGCATGCTGTCGATCCTGCTGCCACAACCATCGATCCAG-TCCAATCTTAGACTAG
* *
29015944 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGCACTGAGCCGAT-CGAAG
65 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGTGGGCACTGAGCC-ATCCGAAG
* * *
29016008 AGGCATAATCCGCAAG-TCGAGGATCGGCCC-AGTCCCCCTCTACGTGCTGCTGATCCCACTGCC
129 AGGCATAATCCGCAAGCTCG-GGATCGGCCCGA-TCCCCCTCTACATGCTACCGATCCCACTGCC
29016071 ACAACCCTC-GATCCAGCT-GGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
192 ACAACCCTCTG-TCCAGCTAGGG-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
29016134 GAAA
255 GAAA
29016138 CGGCGTACGG
Statistics
Matches: 231, Mismatches: 21, Indels: 12
0.88 0.08 0.05
Matches are distributed among these distances:
314 9 0.04
315 220 0.95
316 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.20
Consensus pattern (315 bp):
GGTCCCCCATGCATGCTGTCGATCCTGCTGCCACAACCATCGATCCAGTCCAATCTTAGACTAGG
AATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGTGGGCACTGAGCCATCCGAAGAG
GCATAATCCGCAAGCTCGGGATCGGCCCGATCCCCCTCTACATGCTACCGATCCCACTGCCACAA
CCCTCTGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
AGCGTGCGGGTGCTCACTGGCTGGAGTGGCAGAATCGCAAGTCGGGCATCGGCCC
Found at i:29016291 original size:26 final size:26
Alignment explanation
Indices: 29016261--29016311 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29016251 GGTCCGGTCC
* *
29016261 TAGACTAGGAATGAAGTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
* *
29016287 TAGACTGGGGATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
29016312 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:29017017 original size:26 final size:26
Alignment explanation
Indices: 29016979--29017031 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29016969 GGCTCAAACT
*
29016979 CTTAGACTGGGAATGAACGCGGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
29017005 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACGCCGTATG
29017031 C
1 C
29017032 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:29017512 original size:26 final size:26
Alignment explanation
Indices: 29017483--29017532 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
29017473 GTCTGATCTT
29017483 AGACTGGGAATGAACTCCGCATGCTG
1 AGACTGGGAATGAACTCCGCATGCTG
* *
29017509 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGCATGC
29017533 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.32, T:0.20
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGCATGCTG
Found at i:29017899 original size:26 final size:26
Alignment explanation
Indices: 29017847--29017899 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
29017837 CTGGTCCGAT
*
29017847 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCTACATG
* * * *
29017873 CTTAGACTGGGGATGGACTCTATATG
1 CTTAGACTAGGAATGAACTCTACATG
29017899 C
1 C
29017900 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTACATG
Found at i:29018084 original size:26 final size:26
Alignment explanation
Indices: 29018055--29018107 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29018045 CCGGTCTGAT
*
29018055 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAAATCCGTATG
*
29018081 CTTAGACATGGAATGAAATCTGTATG
1 CTTAGACATGGAATGAAATCCGTATG
29018107 C
1 C
29018108 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:29019503 original size:159 final size:158
Alignment explanation
Indices: 29019144--29019644 Score: 397
Period size: 159 Copynumber: 3.2 Consensus size: 158
29019134 AACTTCGTAT
* * * * * * *
29019144 GCTTAGACATGGAATGAACTCTGTACGCCTAAGGCAACCCACGAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* *
29019209 CAGGCCAGAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
66 CAGGCCAGAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGACCCCCCTACGTGCTATCGATCC
* * *
29019274 TGCTGTCATAACCCTCAGTCCGGTCCAA
131 CGCTGCCACAACCCTCAGTCCGGTCCAA
* * * * *
29019302 TCTTAGAC-TGGAAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCATTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * *
29019366 GCCAGTCGA-AGAGGTATAATGCGCAAGCCGGGGATCGACCCGGACCCCCTCTACGTGCTATCGG
65 G-CAGGCCAGAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGACCCCC-CTACGTGCTATCGA
* ***
29019430 TCCCGCTGCCACAACCCTC-GATTCGG-CTGGG
128 TCCCGCTGCCACAACCCTCAG-TCCGGTC-CAA
* * * * * ** *
29019461 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGAGCGTTCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * ** ** * * * * *
29019526 CCGG-CAGGAGAGGCAGAATGCGTAAATCGGGGATCGGCCCGG--TCCCCTGCGTGCTGTCGATC
66 CAGGCCA-GAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGACCCCCCTACGTGCTATCGATC
* * * * *
29019588 CTGCTACCTCAACCCTCGGTCCGGTCCCA
130 CCGCTGCCACAACCCTCAGTCCGGTCCAA
* * *
29019617 TCTTAGA-TTGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29019645 TTAGACTGGA
Statistics
Matches: 269, Mismatches: 63, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
155 1 0.00
156 53 0.20
157 9 0.03
158 90 0.33
159 114 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CAGGCCAGAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGACCCCCCTACGTGCTATCGATCC
CGCTGCCACAACCCTCAGTCCGGTCCAA
Found at i:29019944 original size:171 final size:171
Alignment explanation
Indices: 29019643--29019971 Score: 410
Period size: 171 Copynumber: 1.9 Consensus size: 171
29019633 AACTCCATAT
* * **
29019643 GCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCTACCCATGAAACAAGCATACGGGCACTCAG
1 GCTTAGACTGGAGATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCACTCAG
* * * *** * * *
29019708 TCGGTCGGAGAGGCATAATGTGTAAGCCGGGGATCAGCTCGGTCCCCCTCTGCATGCTGCCGATC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCCCCTGCATGCTACCGATC
* *
29019773 CCGCTTCCGTTCCTGCTACCACAACCCTTGGTCTGGCTGGG
131 CCGCTGCCGGTCCTGCTACCACAACCCTTGGTCTGGCTGGG
* * *
29019814 GCTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGAGATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCACTCA
* *
29019878 GCCGGCCGGAGAGGTAGAATGCACAAGCCAGGGATC-GACTCGGTCCCCCCCTGCCTGCTACCGA
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAG-CTCGGTCCCCCCCTGCATGCTACCGA
* * **
29019942 TCCTGCTGCTGGTCCTGCTGTCACAACCCT
129 TCCCGCTGCCGGTCCTGCTACCACAACCCT
29019972 CGATCCGATT
Statistics
Matches: 132, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
170 1 0.01
171 127 0.96
172 4 0.03
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGAGATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCCCCTGCATGCTACCGATC
CCGCTGCCGGTCCTGCTACCACAACCCTTGGTCTGGCTGGG
Found at i:29020516 original size:26 final size:26
Alignment explanation
Indices: 29020487--29020539 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29020477 CCGATCTGAT
*
29020487 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
29020513 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
29020539 C
1 C
29020540 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:29020841 original size:869 final size:859
Alignment explanation
Indices: 29019117--29021442 Score: 2548
Period size: 869 Copynumber: 2.7 Consensus size: 859
29019107 GTGGCTCAAA
*
29019117 ATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACATGGAATGAACTCTGTACGCCTAAGGCAA
1 ATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGGCAA
* * * * * * *
29019181 CCCACGAAACGAGTGTGTGGGCGCTC-AGCAGGCC-AGAGAGGTAGAATGCACAAGCCAGGGATC
65 CCCATGAAACGAGCGTGCGGGCGCTCAACCA-GCCGA-AGAGGCAGAATGCGCAAGCCAAGGATC
* *
29019244 GACCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCATAACCCTCAGTCCGGTCCAATCTTAGA
128 GACCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCACAACCCTCAGTCCGGTCCGATCTTAGA
* * * * * * *
29019309 CTGGAAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAGCCAG-T-
193 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGTTGAGCCTGCTG
* * * * *
29019372 CGAAGAGGTATAATGCGCAAGCCGGGGATCGACCCGGA-CCCCCTCTACGTGCTATCGGTCCCGC
258 C-AGGA-G--TAATGCGCAAGCCGGGGATCGGCCC-GATCCTCATCT-C-TGCTGTCGGTCCCGC
* * * *
29019436 TGCCACAACCCTCGATTCGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAATCC
316 TGCCATAA-CCTCG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * * ** *
29019501 ATGAAACGAGCGTTCAGGTGCTCAACCGGCAGGAGAGGCAGAATGCGTAAATCGGGGATCGGCCC
379 ACGAAACGAGCGTT-GGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC
* * * *
29019566 GGTCCCC-TGCGTGCTGTCGATCCTGCTACCTCAACCCTCGGTCCGGTCCCATCTTAGATTGGGA
443 GATCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * ** *
29019630 ATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCTACCCATGAAACAAGCA
508 ATGAACTCCGTATGCTTAGACTGG-GATGAACTCCGTATGCCTAAGTCAACCCA-CAAATGAGCG
* * * * * * * *
29019695 TACGGGCACTCAGTCGGTCGGAGAGGCATAATGTGTAAGCCGGGGATCAGCTCGGTCCCCCTCTG
571 TGCGGGCACTCAGCCAGCCGGAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGATCCCCCTCTG
* * * *
29019760 CATGCTGCCGATCCCGCTTCCGTTCCTGCTACCACAACCCTTGGTCTGGCTGGGGCTTAGACATG
636 CATGCTGCCGATCCCGCTACCGATCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTACACATG
* * * *
29019825 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGGCCGGAGA
701 GAATCAACTCCGCATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAGCCGACCGGAGA
* * * *
29019890 GGTAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCCCTGCCTGCTACCGATCCTGCTGCTGGT
766 GGTAGAATGCACAAGCCAGGGATCGACCCGGTCCACCCCTGCCTGCTACCAATCCTGCTGCTAGT
*
29019955 CCTGCTGTCACAACCCTCGATCCGAT-TCG
831 CCTGCTGTCACAACCCTCGATCCGGTCT-G
* * *
29019984 TTCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACT-TCGTATGCCTAAGGCAA
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCT-GTATGCCTAAGGCAA
* * * *
29020048 CCCATGAAACGAGCCTGCGGGCGCTCAACCAGCCGAAGAGGCACAATGTGCAAGCCAAGGATCGG
65 CCCATGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGA
* ** *
29020113 CTCAATCCCCCCTGCGTGCTATCGATCCTGCTGTCACAACCCTC-GATCCGGTCTGATCTTAGAC
130 CCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCACAACCCTCAG-TCCGGTCCGATCTTAGAC
* * * *
29020177 TGGGAATGATCTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTGAGCCTGCTGG
194 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGTTGAGCCTGCT-G
* *
29020242 CTAGGCGTAATGCGCAAGCCGGGGATCGGCCCGATCCTCATCTGCATGCTGTCGGTCCTGCTGCC
258 C-AGGAGTAATGCGCAAGCCGGGGATCGGCCCGATCCTCATCT-C-TGCTGTCGGTCCCGCTGCC
* * *
29020307 ATAACCTTCAGTCCGGTTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
320 ATAACC-TC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * *
29020372 AACGTGTGTGTGGGCGCTCAGTCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGATC
383 AACGAGCGT-TGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATC
* * * * *
29020437 CCTCTTGTGTGCTGTAGATCCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
447 CC-CTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
*
29020502 AACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAATTGAGCGTGC
511 AACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACAAA-TGAGCGTGC
* * *
29020567 GGGCGCTCAGCCAGCCGGAGAGGCATAATGTGCCA-CCTGAGGATC-GACCCGATCCCCTTCTGC
574 GGGCACTCAGCCAGCCGGAGAGGCATAATGTGCAAGCC-GAGGATCAG-CCCGATCCCCCTCTGC
* *
29020630 ATGTTGCCGATCCCGCTACCGATCCTGCTACCACAACCCTCGAT-TCGGCTGGGGCTTACACATG
637 ATGCTGCCGATCCCGCTACCGATCCTGCTACCACAACCCTCGGTCT-GGCTGGGGCTTACACATG
* *
29020694 GAATCAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAATCC-ACCGGAG
701 GAATCAACTCCGCATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTC-AGCCGACCGGAG
* ** * * ** *
29020758 AGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCACCCCTGCGTGCTGTCAATCTTGCTGCTAG
765 AGGTAGAATGCACAAGCCAGGGATCGACCCGGTCCACCCCTGCCTGCTACCAATCCTGCTGCTAG
* ** * *
29020823 TCCTGTTGTCGTAACCCTCGGTTCGGTCTG
830 TCCTGCTGTCACAACCCTCGATCCGGTCTG
* * * *
29020853 ATCTTCGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTACGCCAA-
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGGCAAC
* * * * * * * *
29020917 CCAGTGAAACGAGCGTGCGGGCACTCAATC-GACAGGAGAGGCAGAATGCGTAAGTCGAGGATCA
66 CCA-TGAAACGAGCGTGCGGGCGCTCAACCAG-CCGAAGAGGCAGAATGCGCAAGCCAAGGATCG
* * * * * ***
29020981 ACCCGGTCCCTCTTGCGTGCTATCGATCCTACTATCGCAACCCTCAGTCTAATCCGATCTTAGAC
129 ACCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCACAACCCTCAGTCCGGTCCGATCTTAGAC
* *
29021046 TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGTGTGCAGGCGTTGAGCCTGC--C
194 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGTTGAGCCTGCTGC
* * *
29021109 A-GAG--A-G-GCATA-------AT-GCGCCC--T-CT-A-C-CTACTGTCGATCCCGCTACCAT
259 AGGAGTAATGCGCA-AGCCGGGGATCG-GCCCGATCCTCATCTCTGCTGTCGGTCCCGCTGCCAT
*
29021155 AATCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
322 AA-CCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * *
29021220 CGGGCATACGGGTGCTCAGCCGACCGGAGAGGCAAAATACGCAAGCCGGGGACCGGCTCGATCCC
385 CGAGCGT-TGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGAT-CC
** ** * **
29021285 CCTTGCGTGCTACCGATCCTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATCCA
448 CCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
29021350 CTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGA
513 CTCCGTATGCTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCAC-AAATGAGCGTGCGG
* * *
29021415 GCATTGAGCCAGCCAGAGAGGCATAATG
576 GCACTCAGCCAGCCGGAGAGGCATAATG
29021443 CACAAGCTGG
Statistics
Matches: 1229, Mismatches: 199, Indels: 83
0.81 0.13 0.05
Matches are distributed among these distances:
845 3 0.00
846 253 0.21
847 9 0.01
849 1 0.00
850 1 0.00
851 2 0.00
852 1 0.00
853 1 0.00
854 6 0.00
860 3 0.00
861 2 0.00
862 1 0.00
864 2 0.00
865 1 0.00
866 7 0.01
867 361 0.29
868 20 0.02
869 544 0.44
870 11 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (859 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGGCAAC
CCATGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGAC
CCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCACAACCCTCAGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGTTGAGCCTGCTGCAG
GAGTAATGCGCAAGCCGGGGATCGGCCCGATCCTCATCTCTGCTGTCGGTCCCGCTGCCATAACC
TCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCG
TTGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCTTGCGT
GCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAATGAGCGTGCGGGCACTCAGCC
AGCCGGAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCCC
GCTACCGATCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTACACATGGAATCAACTCCGCAT
GCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAGCCGACCGGAGAGGTAGAATGCACAAG
CCAGGGATCGACCCGGTCCACCCCTGCCTGCTACCAATCCTGCTGCTAGTCCTGCTGTCACAACC
CTCGATCCGGTCTG
Found at i:29021382 original size:26 final size:26
Alignment explanation
Indices: 29021333--29021385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29021323 CCGGTCCGAT
*
29021333 CTTAGACTGGGAATCCACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
29021359 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
29021385 C
1 C
29021386 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:29021713 original size:158 final size:160
Alignment explanation
Indices: 29021359--29022019 Score: 539
Period size: 159 Copynumber: 4.2 Consensus size: 160
29021349 ACTCCGTATG
* * * * * * * **
29021359 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGAGCATTGAGC
1 CTTAGACAGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTGAGC
* * * * * * * * *
29021424 CAGCCAGAGAGGCATAATGCACAAGCTGGGGATC-GACACGGTCCCCCTCTACCTACTGCCTATC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGACCCGATCCCCCTCTACGTACTGCCGATC
* * **
29021488 CCACTGCCACAACCCTCGGTCTG-GCTGGGG
131 CCACTGCCACAACCCTCGGTCCGATC-GGAT
* * * *
29021518 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCTTATGGGCGCTGAGC
1 CTTAGACAGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTGAGC
* * * * * * *
29021583 CGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCAG-CCCGGTACCCC-CTACGTGCTGTCGATC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGACCCGATCCCCCTCTACGTACTGCCGATC
* * *
29021646 CTACTGCAACAACCCTCGGTCCGATCCGAT
131 CCACTGCCACAACCCTCGGTCCGATCGGAT
* * *
29021676 CTTAGACAGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGTATGGGTGCTGAGC
1 CTTAGACAGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTGAGC
** * * * * * * * *
29021741 CGGATGAAGAGGCATAATGCGTAAGACGGGGAT-TGACCCGATCCCCCTCTGCGTACTGTCGGTC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGACCCGATCCCCCTCTACGTACTGCCGATC
* * * *
29021805 CCGCTGCCACAACCCTCGATCCGACTGGGGT
131 CCACTGCCACAACCCTCGGTCCGA-TCGGAT
* * * ** *
29021836 -TTAGACATGGAATGAACTCCCTATGCCTAAG-CAAATCCATGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGACAGGGAATGAACTCCCTATGCCTAAGTC-AACCCATGAAATGAGCGTATGGGCGCTGAG
* * * * * * *
29021899 CTGACCGGAGAGGTAGAATGTGCAAGCCGGGGATCAG-CCCGATCCCCCT-TACGTGCTACCAAT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGACCCGATCCCCCTCTACGTACTGCCGAT
* ** ** ** * *
29021962 GCTGCTGCTGCAACCCTCGGTATGGTCTGAT
130 CCCACTGCCACAACCCTCGGTCCGATCGGAT
* *
29021993 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACAGGGAATGAACTCCCTATGC
29022020 TTAGACTGGC
Statistics
Matches: 392, Mismatches: 102, Indels: 17
0.77 0.20 0.03
Matches are distributed among these distances:
157 4 0.01
158 174 0.44
159 209 0.53
160 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (160 bp):
CTTAGACAGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTGAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGACCCGATCCCCCTCTACGTACTGCCGATC
CCACTGCCACAACCCTCGGTCCGATCGGAT
Found at i:29021935 original size:317 final size:317
Alignment explanation
Indices: 29021359--29022019 Score: 790
Period size: 317 Copynumber: 2.1 Consensus size: 317
29021349 ACTCCGTATG
* * * *
29021359 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGAGCATTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGAGCACTGAGC
* *
29021424 CAGCCAGAGAGGCATAATGCACAAGCTGGGGATCGACACGGTCCCCCTCTACCTACTGCCTATCC
66 CAGCCAGAGAGGCATAATGCACAAGCTGGGGATCGACACGATCCCCCTCTACCTACTGCCGATCC
* * * *
29021489 CACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGATCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCAAA
* * * **
29021554 CCCATGAAATGAGCTTATGGGCGCTGAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCAG
196 CCCATGAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCAG
* ** * *
29021619 CCCGGTACCCCC-TACGTGCTGTCGATCCTACTGCAACAACCCTCGGTCCGATCCGAT
261 CCCGAT-CCCCCTTACGTGCTACCAATCCTACTGCAACAACCCTCGGTACGATCCGAT
* * * * **
29021676 CTTAGACAGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGTATGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGAGCACTGAGC
* ** * * * * * *
29021741 C-G-GATGAAGAGGCATAATGCGTAAGAC-GGGGATTGACCCGATCCCCCTCTGCGTACTGTCGG
66 CAGCCA-G-AGAGGCATAATGCACAAG-CTGGGGATCGACACGATCCCCCTCTACCTACTGCCGA
* * *
29021803 TCCCGCTGCCACAACCCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGC
128 TCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGC
* * * * * *
29021868 AAATCCATGAAATGGGCGTGCGGGCGCTCAGCTGACCGGAGAGGTAGAATGTGCAAGCCGGGGAT
193 AAACCCATGAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGAGGAT
* * ** * * *
29021933 CAGCCCGATCCCCCTTACGTGCTACCAATGCTGCTGCTGCAACCCTCGGTATGGTCTGAT
258 CAGCCCGATCCCCCTTACGTGCTACCAATCCTACTGCAACAACCCTCGGTACGATCCGAT
*
29021993 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
29022020 TTAGACTGGC
Statistics
Matches: 287, Mismatches: 53, Indels: 8
0.82 0.15 0.02
Matches are distributed among these distances:
315 1 0.00
316 7 0.02
317 278 0.97
318 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGAGCACTGAGC
CAGCCAGAGAGGCATAATGCACAAGCTGGGGATCGACACGATCCCCCTCTACCTACTGCCGATCC
CACTGCCACAACCCTCGATCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCAAA
CCCATGAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCAG
CCCGATCCCCCTTACGTGCTACCAATCCTACTGCAACAACCCTCGGTACGATCCGAT
Found at i:29022034 original size:26 final size:26
Alignment explanation
Indices: 29021993--29022045 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29021983 ATGGTCTGAT
29021993 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29022019 CTTAGACTGGCG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCATATG
29022045 C
1 C
29022046 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29022399 original size:26 final size:26
Alignment explanation
Indices: 29022349--29022399 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29022339 GGTCCAATCC
*
29022349 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGAATGCT
*
29022375 TAGACTGTGG-ATGAACTCTGAATGC
1 TAGACTG-GGAATGAACTCCGAATGC
29022400 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGAATGCT
Found at i:29022673 original size:343 final size:339
Alignment explanation
Indices: 29021676--29023804 Score: 1405
Period size: 343 Copynumber: 6.2 Consensus size: 339
29021666 CCGATCCGAT
* * * * ** *
29021676 CTTAGACAGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGTATGGGTGCTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * *
29021741 CGGA-TGAAGAGGCATAATGCGTAAGACGGGGATTGACCCGATCCCCCTCTGCGTACTGTCGGTC
65 C-GACCGAAGAGGCATAATGCGCAAG-CGGGGATCGACCCGATCCCCTTCTGCGTGCTGTCGGTC
** * *
29021805 CCGCTGCCACAACCCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCAA
128 CCATTGCCACAAACCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
29021870 ATCCATGAAATGGGCGTGCGGGCGCTCAGCTGACCGGAGAGGTAGAATGTGCAAGCCGGGGATC-
193 ATCCATGAAATGGGCGTGCGGCCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* * * * * * * *
29021934 AGCCCGATCCCCCTTA-CGTGCTACCAATGCTGCTGCTGCAACCCTCGGTATGGTCTGATCTTAG
258 A-CCTGGTCCCCC-TAGCGTGCTATCGATCCTGCTGC-GCAACCCTCAGT-TGGTCCGATCCTAG
*
29021998 ACTGGGAATGAACTCCATATG
319 ACTGGGAATGAACTCCGTATG
* * *
29022019 CTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGG-GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * *
29022084 CGGCCGGAGAGGCATAATGCGCAAGCGGAGGATC-ACCCGGT-CCGTCTCTGCGTGCTGTCGATC
65 CGACCGAAGAGGCATAATGCGCAAGCGG-GGATCGACCCGATCCCCT-TCTGCGTGCTGTCGGT-
* * *
29022147 CCGCTATCGATCCTGCTACCAAAACCCTCGGTTCGACTGGGGTTTAGACATGGAATGAACTCCCT
127 -C-C---C-AT--TGCCA-C-AAA-CCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCCT
* * *
29022212 ATGCCTAAGCCAATCCATGAAATGAGCGTACGGCAGCTCAGTCA-GCCGGAGAGGCAGAATGCGC
181 ATGCCTAAGCCAATCCATGAAATGGGCGTGCGGCCGCTCAG-CAGGCCGGAGAGGCAGAATGCGC
* * * *
29022276 AAGCCGGGGATCGACCTGGTCCCCCCT-GCGTGGTGTCGATCTTGCTACCGCAACCCTCAGTCTG
245 AAGCCGGGGATCGACCTGGT-CCCCCTAGCGTGCTATCGATCCTGCT-GCGCAACCCTCAGT-TG
*
29022340 GTCCAATCCTAGACTGGGAATGAACTCCGTATG
307 GTCCGATCCTAGACTGGGAATGAACTCCGTATG
* * *
29022373 CTTAGACTGTGGATGAACTCTGAATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTGAGC
1 CTTAGACTG-GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* ** *
29022438 CGACCGAAGAGGCATAATGCACAAGCTGGGGATCGGTCTGATCCCCTTCTGCGTGCTGTCGGTCC
65 CGACCGAAGAGGCATAATGCGCAAGC-GGGGATCGACCCGATCCCCTTCTGCGTGCTGTCGGTCC
* * * *
29022503 CATTGCCACAAATCTCGATCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
129 CATTGCCACAAACCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
29022568 CCCATGAAACGGGCGCGCGACCGCTCAGCAGGCTGGAGAGGCAGAATACGCAAGCCGGGGATCGA
194 TCCATGAAATGGGCGTGCGGCCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
*
29022633 CCTGGTCCCCCTAGCGTGCTATCGATCCTGCTGTCGCAACCCTCAGTTCGATCCGATCCTAGACT
259 CCTGGTCCCCCTAGCGTGCTATCGATCCTGCTG-CGCAACCCTCAGTT-GGTCCGATCCTAGACT
*
29022698 GGAAATGAACTCCGTATG
322 GGGAATGAACTCCGTATG
* * * * *
29022716 CTTAGACTGGGGATGAACTTCGTATGCGTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * * * * * * ** *
29022781 TGGCTGGAGAGGCAGAATACTCAAGTCGGGGATCTG-CCTGATCCCC-CCTGCGTGCTACCGATC
65 CGACCGAAGAGGCATAATGCGCAAG-CGGGGATC-GACCCGATCCCCTTCTGCGTGCTGTCGGTC
* * * *
29022844 CTGCTACTGGTCCTACTGTGGCAACCCTCGATCCGGTCT--GATCTTAGAC-TGGGAATGAACTC
128 C--C-A-TTG-CC-A------CAAACCTCGATCC-GACTGGGGT-TTAGACAT-GGAATGAACT-
* * * * * * *
29022906 CGTATGCTTAGACATGGAATGAACTCTGTATGCCTAACCAACCCACGAAATGAGCATTCGGGCGC
177 C-----C-----C-T---ATG--C-C--TA-----AGCCAATCCATGAAATGGGCGTGCGGCCGC
* * * * * * * * *
29022971 TCAGCCGACCGAAGAGGTAGAATGTGCAAGCTGAGGATC-AGCCTGATCCCTCCT-GCATGC-AG
218 TCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCTGGTCCC-CCTAGCGTGCTA-
* *
29023033 TAGATCCTACTGCCGCAACCCTC-----G---G-T-C----C-------G-A-TCCG-AT-
280 TCGATCCTGCTG-CGCAACCCTCAGTTGGTCCGATCCTAGACTGGGAATGAACTCCGTATG
* * * * *
29023069 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACCAAATGAGCGTACGGGCGCTGAGT
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
*
29023134 CGACCGGAA-AGGCATAATGCGCAAGCCGGGGATC-AGCCCGATTCCCC-TCTGCGTGTTG-CTG
65 CGACC-GAAGAGGCATAATGCGCAAG-CGGGGATCGA-CCCGA-TCCCCTTCTGCGTGCTGTC-G
* ** * * * * * *
29023195 GTGCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAAACATGGAATGAACACCCTATGCCTAAG
125 GTCCCATTGCCACAAACCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * * * *
29023260 CCAACCCATGAAACGAGCGTGCGGGCGCTCCGCCA-GCCGGAGAGTCAAAATGCGCAAGTCGGGG
190 CCAATCCATGAAATGGGCGTGCGGCCGCTCAG-CAGGCCGGAGAGGCAGAATGCGCAAGCCGGGG
* * * * * ** * *
29023324 ATAGGCCTGGTCCCCCCAGCGTGCTGTCGATCCTGCTGTCACAACCCTC-GATCCAGTTCGATCT
254 ATCGACCTGGTCCCCCTAGCGTGCTATCGATCCTGCTG-CGCAACCCTCAG-T-TGGTCCGATCC
29023388 TAGACTGGGAATGAACTCCGTATG
316 TAGACTGGGAATGAACTCCGTATG
* * * * *
29023412 CTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCATTCGGGCGCTGAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * * * * *
29023477 CGACCGGAGAGGCATAATGTGCAAGCTGAGGATCCACCCGGTCGCCC-TCTGCTTGCTGCCGATC
65 CGACCGAAGAGGCATAATGCGCAAGC-GGGGATCGACCCGATC-CCCTTCTGCGTGCTGTCGGTC
* * * * * * *
29023541 CTACTGCCACAACCCTCGGT-CGGCTGGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCA
128 CCATTGCCACAAACCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** * ** * * ** * * *
29023605 ATAAATGAAACT-GGTGTGCGGGTGCTCAGCCGACTAGAGAGGTAGAATGCACAAGCTGGGGATC
193 ATCCATGAAA-TGGGCGTGCGGCCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * * * * * *
29023669 GACCCGCTCCCCCCT-GAGTGCTACCAATCTTGCTGTCGCAACCCTC----GATCCGATCTTAGA
257 GACCTGGT-CCCCCTAGCGTGCTATCGATCCTGCTG-CGCAACCCTCAGTTGGTCCGATCCTAGA
29023729 CTGGGAATGAACTCCGTATG
320 CTGGGAATGAACTCCGTATG
* *
29023749 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGG
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
29023805 CTGCTCAGCC
Statistics
Matches: 1410, Mismatches: 253, Indels: 252
0.74 0.13 0.13
Matches are distributed among these distances:
316 2 0.00
317 82 0.06
318 1 0.00
322 2 0.00
323 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
327 4 0.00
330 1 0.00
331 1 0.00
332 1 0.00
336 1 0.00
337 83 0.06
339 1 0.00
340 1 0.00
341 11 0.01
342 190 0.13
343 458 0.32
344 14 0.01
345 3 0.00
346 6 0.00
347 2 0.00
348 5 0.00
349 3 0.00
350 1 0.00
351 4 0.00
352 6 0.00
353 84 0.06
354 294 0.21
355 37 0.03
356 4 0.00
357 1 0.00
360 1 0.00
364 1 0.00
365 1 0.00
366 1 0.00
368 1 0.00
369 4 0.00
370 1 0.00
371 1 0.00
372 1 0.00
374 2 0.00
378 2 0.00
379 84 0.06
380 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (339 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
GACCGAAGAGGCATAATGCGCAAGCGGGGATCGACCCGATCCCCTTCTGCGTGCTGTCGGTCCCA
TTGCCACAAACCTCGATCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATC
CATGAAATGGGCGTGCGGCCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
TGGTCCCCCTAGCGTGCTATCGATCCTGCTGCGCAACCCTCAGTTGGTCCGATCCTAGACTGGGA
ATGAACTCCGTATG
Found at i:29022721 original size:26 final size:26
Alignment explanation
Indices: 29022692--29022742 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29022682 GATCCGATCC
29022692 TAGACTGGAAATGAACTCCGTATGCT
1 TAGACTGGAAATGAACTCCGTATGCT
** *
29022718 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGAAATGAACTCCGTATGC
29022743 GTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCT
Found at i:29022915 original size:26 final size:26
Alignment explanation
Indices: 29022886--29022938 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29022876 CCGGTCTGAT
29022886 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29022912 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29022938 C
1 C
29022939 CTAACCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29023427 original size:26 final size:26
Alignment explanation
Indices: 29023386--29023438 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29023376 CCAGTTCGAT
29023386 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29023412 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
29023438 C
1 C
29023439 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29023752 original size:26 final size:26
Alignment explanation
Indices: 29023723--29023775 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29023713 TCGATCCGAT
29023723 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29023749 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29023775 C
1 C
29023776 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29023957 original size:26 final size:26
Alignment explanation
Indices: 29023919--29023971 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
29023909 CCGATCCGAT
*
29023919 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
29023945 CTTAGACAT-GGAATAAACTTCGTATG
1 CTTAGAC-TGGGAATAAACTTCGTATG
29023971 C
1 C
29023972 ATAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:29024537 original size:159 final size:156
Alignment explanation
Indices: 29024073--29024573 Score: 445
Period size: 159 Copynumber: 3.2 Consensus size: 156
29024063 TGCCGATCCC
* * * *
29024073 GCTGTCGATCTTGCTGCCACAACGCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCATAT
1 GCTGTCGATCCTGCTGCCACAACCCTCTGTCCAG-TGGGGCTTAGACATGGAATGAACTCCATAT
* * * * * *
29024138 GCCTAAGCCAACCCACGAAAAGAACGTACGGGCGCTCAGTCGATCGAAAAGGCAGAATGCACAAG
65 GCCT-AGGCAACCCACGAAAAGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAG
* * * * *
29024203 TCGGGGACCGATCC-GAT-CCCCCTGTGT
129 CCGGGGATCG-GCCTGGTCCCCCCTGCGT
* * * ** *
29024230 GCTGTCGATCCTGCTGTCGCAACCCT-TGGTCCAGTCCGATCTTAGAC-TGGGAATGAACTCCGT
1 GCTGTCGATCCTGCTGCCACAACCCTCT-GTCCAGT-GGGGCTTAGACAT-GGAATGAACTCCAT
* * * * * * * * * *
29024293 ATGCCTAAGTCAACCCACGAAATGAGCATTCGAGCGTTGAGCCAGTCGGAGAGGCATAATGCGCA
63 ATGCCT-AGGCAACCCACGAAAAGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCA
** *
29024358 AGCCAAGGATCAG-CTCGGTCCCCCTCTGCGT
127 AGCCGGGGATCGGCCT-GGTCCCCC-CTGCGT
* * * *
29024389 GCTATCGGTCCCGCTGCCACAACCCTCTGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGATCCTGCTGCCACAACCCTCTGTCCAG-TGGGGCTTAGACATGGAATGAACTCCATAT
* * * * *
29024454 GCCTAGGCAAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAG
65 GCCTAGGC-AACCCACGAAAAGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAG
* *
29024519 CCGGGGTTTGGCCTGGTCCCCCCTGCGT
129 CCGGGGATCGGCCTGGTCCCCCCTGCGT
* *
29024547 GCTGTCGATCCTGATGCCGCAACCCTC
1 GCTGTCGATCCTGCTGCCACAACCCTC
29024574 GGTCTGATCT
Statistics
Matches: 267, Mismatches: 65, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
155 1 0.00
156 2 0.01
157 107 0.40
158 35 0.13
159 117 0.44
160 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTGTCGATCCTGCTGCCACAACCCTCTGTCCAGTGGGGCTTAGACATGGAATGAACTCCATATG
CCTAGGCAACCCACGAAAAGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCC
GGGGATCGGCCTGGTCCCCCCTGCGT
Found at i:29025248 original size:11 final size:11
Alignment explanation
Indices: 29025216--29025241 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
29025206 CGATTAGGCT
29025216 CTCCAGCGATG
1 CTCCAGCGATG
29025227 CTCCAGCGATG
1 CTCCAGCGATG
29025238 CTCC
1 CTCC
29025242 GGTGATGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.42, G:0.23, T:0.19
Consensus pattern (11 bp):
CTCCAGCGATG
Found at i:29025355 original size:26 final size:26
Alignment explanation
Indices: 29025318--29025368 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29025308 GCTCAAACTC
29025318 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
29025344 TTAGACAT-GGAATGAACTTCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
29025369 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:29025711 original size:26 final size:26
Alignment explanation
Indices: 29025660--29025712 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29025650 CCAATTTGAA
* *
29025660 CTTAGACTGGGAATGAACTTTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29025686 CTTAGACT-GGAGATGAACTCTGTATG
1 CTTAGACTGGGA-ATGAACTCTGTATG
29025712 C
1 C
29025713 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29026203 original size:26 final size:26
Alignment explanation
Indices: 29026165--29026217 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29026155 CCGGTCTGAT
29026165 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
29026191 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
29026217 C
1 C
29026218 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29026552 original size:26 final size:26
Alignment explanation
Indices: 29026508--29026559 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29026498 TGGTCTGATT
29026508 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
29026534 TTAGACTAGGG-ATGGACTCCGTATGC
1 TTAGACT-GGGAATGAACTCCATATGC
29026560 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:29027019 original size:159 final size:158
Alignment explanation
Indices: 29026866--29027162 Score: 362
Period size: 159 Copynumber: 1.9 Consensus size: 158
29026856 TTAGACTGGG
* * ** * *
29026866 AATGAACTTCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTGAACCAACC-GAAGA
1 AATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAACCAACCAG-AGA
* * * *
29026930 GGCATAATACGCAAGCCGGGGATTGGCCCAATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
65 GGCAGAATACGAAAGCCGGGGATTGGCCCAATCCCCC-CTGCGTGCTATCGATCCCGCTGCCACA
* *
29026995 ACCCTTGGTCCAGCTGAGGCTTAGATATGA
129 ACCCTCGGTCCAGCTGAGGCTTAGATAGGA
* ** *
29027025 AATGAACTCCTTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAGTCAGCCAGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAACCAACCAGAGAG
* * * * * * *
29027090 GCAGAATGCGAAAGCTGGGGATTGGCCCGATCCCTCCTGTGTGCTATCGATCCTGCTGTCACAAC
66 GCAGAATACGAAAGCCGGGGATTGGCCCAATCCCCCCTGCGTGCTATCGATCCCGCTGCCACAAC
29027155 CCTCGGTC
131 CCTCGGTC
29027163 TGATCTGATT
Statistics
Matches: 115, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 31 0.27
159 83 0.72
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAACCAACCAGAGAG
GCAGAATACGAAAGCCGGGGATTGGCCCAATCCCCCCTGCGTGCTATCGATCCCGCTGCCACAAC
CCTCGGTCCAGCTGAGGCTTAGATAGGA
Found at i:29027371 original size:21 final size:21
Alignment explanation
Indices: 29027347--29027402 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
29027337 ATCCCACTAC
29027347 CAGTCCGGCTGCCACAACCCT
1 CAGTCCGGCTGCCACAACCCT
29027368 CAGTCCGGCTGCCACAACCCT
1 CAGTCCGGCTGCCACAACCCT
29027389 CAGTCCGGCTGCCA
1 CAGTCCGGCTGCCA
29027403 TAACTCCGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.18, C:0.46, G:0.21, T:0.14
Consensus pattern (21 bp):
CAGTCCGGCTGCCACAACCCT
Found at i:29027601 original size:26 final size:26
Alignment explanation
Indices: 29027572--29027624 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29027562 CCGGTCTAAT
29027572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29027598 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29027624 C
1 C
29027625 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29028325 original size:159 final size:159
Alignment explanation
Indices: 29027977--29028760 Score: 619
Period size: 158 Copynumber: 4.9 Consensus size: 159
29027967 AACTCCGTAT
*
29027977 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * * * * * * *
29028042 TCGGTCGAAAAGGCAAAATGCGCAAGCCAAGGATCAGCTCGGTCCCTCCTGTGTGCTGTCA-ATC
66 CCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAGATC
**
29028106 CTGCTGCTGCAACCCTCAATAC-AGTCTGA
131 CTGCTGCCACAACCCTCAATACTA-TCTGA
* * * * *
29028135 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGA
* * *
29028199 GCCAGTCGGAGAGGCATAATGCGCAGGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTG-CAGG
65 GCCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCC-CTGCGTGCTGTCAGA
** * *
29028263 TCCTGCTGCCACAACCCTCGGT-CTAACTGGG
129 TCCTGCTGCCACAACCCTCAATACTATCT-GA
* * * * *
29028294 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * * * * * *
29028359 CC-GATCGGAGCGGTAAAATGCCCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGTTGT-TGAT
66 CCAG-TCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAGAT
** * *
29028422 CCTGCTATCACAACCCTCAATCCGATCTGA
130 CCTGCTGCCACAACCCTCAATACTATCTGA
* * * **
29028452 TCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTAAGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGA
* * * * * * * * * *
29028516 ACCAGCCAGAGAGGCATAATACGCAAGCCGGGGGTC-GACCCAATCCCTCTCTGCATGCTGTC-G
65 GCCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCAG-CCCGATCCC-CCCTGCGTGCTGTCAG
* *** * *
29028579 GT-CTCGCTGCCACAACCCTTTGGT-CTAGCTGGG
128 ATCCT-GCTGCCACAACCC-TCAATACTATCT-GA
* * * *
29028612 GCTTAGACATGAAATGAACTCCTTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTGA
* * * * * ** * * * *
29028676 GCC-GACTAGAGAGGCAGAATGCGGAAG-CTGAGGATTGGCCCGATCCCTCCTTCGTGCT-ACCG
65 GCCAGTC-GGAGAGGCAAAATGCGCAAGCCAG-GGATCAGCCCGATCCCCCCTGCGTGCTGTCAG
* *
29028738 ATCCTGCTGTCGCAACCCTCAAT
128 ATCCTGCTGCCACAACCCTCAAT
29028761 CCGATCCAAT
Statistics
Matches: 487, Mismatches: 115, Indels: 48
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 218 0.45
159 177 0.36
160 86 0.18
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
CCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAGATC
CTGCTGCCACAACCCTCAATACTATCTGA
Found at i:29028759 original size:318 final size:314
Alignment explanation
Indices: 29027977--29028797 Score: 936
Period size: 317 Copynumber: 2.6 Consensus size: 314
29027967 AACTCCGTAT
* *
29027977 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACAT-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCGTGCGGGCGCTCAG
* * * * * * *
29028042 TCGGTCGAAAAGGCAAAATGCGCAAGCCAAGGATCAGCTCGGTCCCTCCTGT-GTGCTGTCAATC
64 CCGATAG-AGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCTCCT-TCGTGCTGTCGATC
* *
29028106 CTGCTG-CTGCAACCCTCAATAC-AGTCTGATCTTAGACT-AGGAATGAACTCTGTATGCCTAAG
127 CTGCTGTC-GCAACCCTCAATCCGA-TCTGATCTTAGACTGA-GAATGAACTCCGTATGCCTAAG
* ** * * * * *
29028168 TCAACCCATGAAATGAGCGTGCGGGCACTGAGCCAGTCGGAGAGGCATAATGCGCAGGCCAGGGA
189 TCAACCCATGAAACGAGCGTAAGGGCACTGAACCAGCCAGAGAGGCATAATACGCAAGCCAGGGA
* *
29028233 TCAGCCCGATCCCCCTCTGCGTGCTGCAGGTCCTGCTGCCACAACCCTCGGTCTAACTGGG
254 TCAGCCCAATCCCCCTCTGCATGCTGCAGGTCCTGCTGCCACAACCCTCGGTCTAACTGGG
*
29028294 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACA-TGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTGCGGGCGCTCAG
* * * * * * * * *
29028359 CCGATCGGAGCGGTAAAATGCCCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGTTGTTGATCC
64 CCGAT-AGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCTCCTTCGTGCTGTCGATCC
* *
29028424 TGCTATCACAACCCTCAATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAA
128 TGCTGTCGCAACCCTCAATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAA
* * * *
29028489 CCCATGAAACGAGTGTAAGGGCGCTGAACCAGCCAGAGAGGCATAATACGCAAGCCGGGGGTC-G
193 CCCATGAAACGAGCGTAAGGGCACTGAACCAGCCAGAGAGGCATAATACGCAAGCCAGGGATCAG
* * *
29028553 ACCCAATCCCTCTCTGCATGCTGTC-GGT-CTCGCTGCCACAACCCTTTGGTCTAGCTGGG
258 -CCCAATCCCCCTCTGCATGCTG-CAGGTCCT-GCTGCCACAACCC-TCGGTCTAACTGGG
* *
29028612 GCTTAGACATGAAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
1 GCTTAGACATG-AATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTGCGGGCGCTCAG
* * * ** * **
29028677 CCGACTAGAGAGGCAGAATGCGGAAGCTGAGGATTGGCCCGATCCCTCCTTCGTGCTACCGATCC
64 CCGA-TAGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCTCCTTCGTGCTGTCGATCC
** * * * *
29028742 TGCTGTCGCAACCCTCAATCCGATCCAATTTTAGACTGGGAATCAACTCCATATGC
128 TGCTGTCGCAACCCTCAATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGC
29028798 TTAGACTGGG
Statistics
Matches: 423, Mismatches: 68, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
316 3 0.01
317 248 0.59
318 171 0.40
319 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (314 bp):
GCTTAGACATGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGCGTGCGGGCGCTCAGCC
GATAGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCTCCTTCGTGCTGTCGATCCTGC
TGTCGCAACCCTCAATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGAGCGTAAGGGCACTGAACCAGCCAGAGAGGCATAATACGCAAGCCAGGGATCAGCCC
AATCCCCCTCTGCATGCTGCAGGTCCTGCTGCCACAACCCTCGGTCTAACTGGG
Found at i:29028805 original size:26 final size:26
Alignment explanation
Indices: 29028772--29028823 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29028762 CGATCCAATT
29028772 TTAGACTGGGAATCAACTCCATATGC
1 TTAGACTGGGAATCAACTCCATATGC
* * *
29028798 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATCAACTCCATATGC
29028824 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCATATGC
Found at i:29029228 original size:158 final size:161
Alignment explanation
Indices: 29028981--29029327 Score: 391
Period size: 158 Copynumber: 2.2 Consensus size: 161
29028971 TCGGCTGGGG
* * * *
29028981 CTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTGAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * * *
29029046 CAATCGGAGAGGCAAAATACGCAAGTCGGGGA-CTGTCTCGATCCCCCCTACGTG-CTGTCGATC
66 CAACCGGAGAGGCAAAATACGCAAGCCAGGGATC-GGCCCGATCCCCCCTACGTGTC-GTCGATC
29029109 CTGCTACCGCAACCCTC-A-G-TCCGGTCCAAT
129 CTGCTACCGCAACCCTCGACGATCCGGTCCAAT
* * * **
29029139 CTTAGACAGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
** * * * * *
29029204 CGGCCGGAGAGGTAGAATATGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGTCGTCGATCCT
66 CAACCGGAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGTCGTCGATCCT
* **
29029269 GCTGCCGCAACCCTCGATCCGATCCGGTCTGAT
131 GCTACCGCAACCCTCGA--CGATCCGGTCCAAT
*
29029302 CTTAGACTGGG-ATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
29029328 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 119 0.76
159 3 0.02
162 15 0.10
163 19 0.12
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (161 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CAACCGGAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGTCGTCGATCCT
GCTACCGCAACCCTCGACGATCCGGTCCAAT
Found at i:29029330 original size:25 final size:26
Alignment explanation
Indices: 29029302--29029353 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29029292 CCGGTCTGAT
29029302 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29029327 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29029353 C
1 C
29029354 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29029537 original size:183 final size:186
Alignment explanation
Indices: 29029139--29029572 Score: 531
Period size: 188 Copynumber: 2.3 Consensus size: 186
29029129 CCGGTCCAAT
* * * * * *
29029139 CTTAGACAGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** * * ** * *
29029204 CGGCCGGAGAGGTAGAATATGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGTCGTCGATCCT
66 CAACCGGAGAGGCAGAATACGCAAGCCAGGGATCAACCCGATCCCCCCTACGTGTCGTCGATCCT
* **
29029269 GCTGCCGCAACCCTCGATCCGATCCGGTCTGATCTTAGACTGGGATGAACTCCGTATG
131 ACTGCCGCAACCCTCGATCC-AT-CGGTCCAATCTTAGACTGGGATGAACTCCGTATG
* *
29029327 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
1 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
29029392 CAATCGGAGAGGCAGAATACGCAAGTC-GAGGA-CAAACTCGAT-CCCCTTACGTG-CTGTCGAT
66 CAACCGGAGAGGCAGAATACGCAAGCCAG-GGATC-AACCCGATCCCCCCTACGTGTC-GTCGAT
29029453 CCTACTGCCGCAACCCTCGAT-C-T-GGTCCAATCTTAGACTGGGAATGAACTCCGTATG
128 CCTACTGCCGCAACCCTCGATCCATCGGTCCAATCTTAGACTGGG-ATGAACTCCGTATG
* * *
29029510 CTTACACAGGGGATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTACGGGCGCTCA
1 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
29029573 TTCGGCTGGA
Statistics
Matches: 214, Mismatches: 28, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
182 17 0.08
183 72 0.34
184 1 0.00
186 2 0.01
187 37 0.17
188 85 0.40
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (186 bp):
CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CAACCGGAGAGGCAGAATACGCAAGCCAGGGATCAACCCGATCCCCCCTACGTGTCGTCGATCCT
ACTGCCGCAACCCTCGATCCATCGGTCCAATCTTAGACTGGGATGAACTCCGTATG
Found at i:29029902 original size:26 final size:26
Alignment explanation
Indices: 29029864--29029916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29029854 CTGGTCTGAT
*
29029864 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29029890 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29029916 C
1 C
29029917 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29030252 original size:159 final size:158
Alignment explanation
Indices: 29029889--29030390 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 158
29029879 AACTTCGTAT
* *
29029889 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAG
* * * *
29029954 TCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGACTCAGTCCCCCCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGACCCAATCCCCCCTGCATGCTGTCAATCC
* * * *
29030019 TACTGCCGCAACCCTCGATACGGTCTGA
131 TACTACCACAACCCTCGATACCGACTGA
* * * * * * *
29030047 TCTTAGAC-TAGGAATGAACTCTGGATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCA
* * * *
29030111 GCCGATCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCAATCCCCCTCTGCATGCTG-CAGG
65 GCCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGACCCAATCCCCC-CTGCATGCTGTCA-A
* *
29030175 TTCTACTACCACAACCCTCGAT-CCGACTGGG
128 TCCTACTACCACAACCCTCGATACCGACT-GA
* * * * * *
29030206 GCTTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAG
* * * ** * * **
29030271 CCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTATTGATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGACCCAATCCCCCCTGCATGCTGTCAATCC
* * * * *
29030336 TGCTGCCACAACCCTCGGT-CTGATCCGA
131 TACTACCACAACCCTCGATACCGA-CTGA
*
29030364 TCTTAGAC-TGGGAATGAACT-CGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29030391 TTAGACTGGT
Statistics
Matches: 279, Mismatches: 57, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 8 0.03
158 149 0.53
159 121 0.43
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGACCCAATCCCCCCTGCATGCTGTCAATCC
TACTACCACAACCCTCGATACCGACTGA
Found at i:29030399 original size:25 final size:26
Alignment explanation
Indices: 29030365--29030416 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
29030355 CTGATCCGAT
29030365 CTTAGACTGG-GAATGAACT-CGTATG
1 CTTAGACTGGTG-ATGAACTCCGTATG
29030390 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGGTGATGAACTCCGTATG
29030416 C
1 C
29030417 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCCGTATG
Found at i:29030782 original size:26 final size:26
Alignment explanation
Indices: 29030744--29030796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29030734 TTGATCTGAT
*
29030744 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
29030770 CTTAGACAT-GGAATCAACTTCGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
29030796 C
1 C
29030797 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:29031040 original size:880 final size:880
Alignment explanation
Indices: 29029326--29031339 Score: 2678
Period size: 880 Copynumber: 2.3 Consensus size: 880
29029316 AACTCCGTAT
* * * * * * *
29029326 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA
** * * * * * * * *
29029390 GCCAATCGGAGAGGCAGAATACGCAAGTCGAGGA-CAAACTCGAT-CCCCTTACGTGCTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCCGGTCCCCCCTGCGTGCTATCGAT
* * * *
29029453 CCTACTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTACACA
129 CCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACT
* * *
29029518 GGGGATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTACGGGCGCTCATTCGGCTGGA
193 GGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCTGGA
* * * * * * *
29029583 GAGGCTAACCGGAGAGGCATAATGTGCAAGCTGAGGATCAGCCTGATCCCTCTCTGTGTGCTGTC
258 GAGGCCAACCAGAAAGGCATAATATGCAAGCTGAGGATCAGCCCGATCCCTCTCTATGTGCTGCC
29029648 GATCCCGCTGACGGTCTTGCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACT
323 GATCCCGCTGACGGTCTTGCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACT
* *
29029713 CTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGTAGAATG
388 CTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAGAATG
* * * ** ** * * *
29029778 CGTAAGTTAGGGATCTGTGCGATCCCTCGTTGCGTGCTACAGATCTTACTGCTGGTCCTACTGTT
453 CGCAAGCTAGGGATCAGCCCGATCCCTCCCTACGTGCTACAGATCCTACTGCTGGTCCTACTGTC
* * *
29029843 GCAACCCTCCTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAAC
518 GCAACCCTCCTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATCAAC
* *
29029908 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTTAGTCGGTCGGAGAGGCAAAAT
583 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGTCGGAGAGGCAAAAT
* * *
29029973 GCGCAAGTCGAGGATCGACTCAGTCCCCCCTGCGTGCTGTCAATCCTACTGCCGCAACCCTCGAT
648 ACGCAAGTCGAGGACCGACTCAGTCCCCCCTGCGTGCTGTCAATCCTACTGCCACAACCCTCGAT
* *
29030038 ACGGTCTGATCTTAGACTAGGAATGAACTCTGGATGCCTAAGTCAACCCACGAAATGAGTGTGCG
713 ACGGTCTGATCTTAGACTAGGAATGAACTCTGGATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * *
29030103 GGCATTGAGCCGATCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCAATCCCCCTCTGCATG
778 GGCACTAAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAATCCCCCTCTGCATG
* *
29030168 CTGCAGGTTCTACTACCACAACCCTCGATCCGACTGGG
843 CTGCAGGTCCCACTACCACAACCCTCGATCCGACTGGG
* * *
29030206 GCTTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* *
29030271 CCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTATTGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* * * *
29030336 TGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGT
131 TACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGG
* * *
29030401 GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGACACTCAGTCGGTTGGAGAG
196 GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCTGGAGAG
* * *
29030466 GCCAACCAGAAAGGCATAATATGCAAG-TCGGGGATTAGCCCGGT-CCTCTTCTATGTGCTGCCG
261 GCCAACCAGAAAGGCATAATATGCAAGCT-GAGGATCAGCCCGATCCCTC-TCTATGTGCTGCCG
* * *
29030529 ATCCCGCTGACGGTCTTGCTGTCATAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
324 ATCCCGCTGACGGTCTTGCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
* ** * * *
29030594 TGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGAGCGCTC-GTCGGCTGGAGAGGCAGAATGC
389 TGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAGAATGC
* * * * * * *
29030658 GCAAGCTGGGGATCAGCCCGGTCACC-CCCTACGTGCTGCCGATCCTGCTGTTGGTCCTGCTGTC
454 GCAAGCTAGGGATCAGCCCGATC-CCTCCCTACGTGCTACAGATCCTACTGCTGGTCCTACTGTC
* * *
29030722 GTAACCCTCGCTTTGATCTGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACATGGAATCAA
518 GCAACCCTC-CTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATCAA
* * *
29030787 CTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGTCGGAGAGGTAGAA
582 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGTCGGAGAGGCAAAA
* * * * ** *
29030852 TACGCAAGTC-AGGGACCGGCTCGGTCCCCCCTGCGTGCTGTCTATCTTGTTGCCACAAGCCTCG
647 TACGCAAGTCGA-GGACCGACTCAGTCCCCCCTGCGTGCTGTCAATCCTACTGCCACAACCCTCG
* * * *
29030916 ATTCGGTCTGATCTTAGACTTGGAATGAGCTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
711 ATACGGTCTGATCTTAGACTAGGAATGAACTCTGGATGCCTAAGTCAACCCACGAAACGAGCGTG
* * **
29030981 CGGG-AGCTAAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGC
776 CGGGCA-CTAAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAATCCCCCTCTGC
* * * * *
29031045 GTGCTGCAGGTCCCGCTGCCACAACTCTCGGTCCGACTGGG
840 ATGCTGCAGGTCCCACTACCACAACCCTCGATCCGACTGGG
* * * * *
29031086 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCGATGAAAGGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * *
29031151 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCTGTCCCCCCTGCGTGTTACCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* * * ** * *
29031216 TACTACCGTAACCCTCGGTCCGGTTTGATCTTAGACTGTGAATGAACTTTGTATGCTTAGACTGG
131 TACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC-TCGTATGCTTAGACTGG
* *
29031281 GGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
195 GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGC
29031340 CAGAGAAGCA
Statistics
Matches: 980, Mismatches: 144, Indels: 19
0.86 0.13 0.02
Matches are distributed among these distances:
879 77 0.08
880 772 0.79
881 131 0.13
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (880 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
TACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGG
GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCTGGAGAG
GCCAACCAGAAAGGCATAATATGCAAGCTGAGGATCAGCCCGATCCCTCTCTATGTGCTGCCGAT
CCCGCTGACGGTCTTGCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACTCTG
TATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAGAATGCGC
AAGCTAGGGATCAGCCCGATCCCTCCCTACGTGCTACAGATCCTACTGCTGGTCCTACTGTCGCA
ACCCTCCTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATCAACTCC
GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGTCGGAGAGGCAAAATACG
CAAGTCGAGGACCGACTCAGTCCCCCCTGCGTGCTGTCAATCCTACTGCCACAACCCTCGATACG
GTCTGATCTTAGACTAGGAATGAACTCTGGATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
ACTAAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAATCCCCCTCTGCATGCTG
CAGGTCCCACTACCACAACCCTCGATCCGACTGGG
Found at i:29031142 original size:159 final size:158
Alignment explanation
Indices: 29030769--29031205 Score: 508
Period size: 159 Copynumber: 2.8 Consensus size: 158
29030759 AACTCCGTAT
* *
29030769 GCTTAGACATGGAATCAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * * *
29030834 CCGGTCGGAGAGGTAGAATACGCAAGTCAGGGACCGGCTCGGTCCCCCCTGCGTGCTGTCTATCT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCTATCC
* * * * *
29030899 TGTTGCCACAAGCCTCGATTCGGTCTGA
131 CGCTGCCACAAGCCTCGAGTCCGACTGA
* * * * *
29030927 TCTTAGACTTGGAATGAGC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTAA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
*
29030991 GCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTG-C-AG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCTA-
*
29031054 GTCCCGCTGCCACAA-CTCTCG-GTCCGACTGGG
128 -TCCCGCTGCCACAAGC-CTCGAGTCCGACT-GA
* * * * * *
29031086 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCGATGAAAGGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-AA
* *
29031151 -CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCTGTCCCCCCTGCGTG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTG
29031206 TTACCGATCC
Statistics
Matches: 236, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
157 3 0.01
158 110 0.47
159 119 0.50
160 4 0.02
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCTATCC
CGCTGCCACAAGCCTCGAGTCCGACTGA
Found at i:29031274 original size:26 final size:26
Alignment explanation
Indices: 29031245--29031297 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29031235 CCGGTTTGAT
* *
29031245 CTTAGACTGTGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
29031271 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29031297 C
1 C
29031298 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29031559 original size:343 final size:343
Alignment explanation
Indices: 29030949--29031688 Score: 998
Period size: 343 Copynumber: 2.2 Consensus size: 343
29030939 AATGAGCTCT
* * * * *
29030949 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTAAGCCGGTCGGAGAGGCATAATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAGAAGCAGAATGCG
** * *
29031014 CAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCAGGTCCCGCTGCCACAACTCTCGGTCC
66 CAAGCCAAGGATAGGCCCGGTCCCCCTCTGCGTGCTGCAGGTCCCGCTGCCACAACCCTCGGTCC
* * * * * *
29031079 GACTGGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCGATGAAAGGGGCATGCGGG
131 GACTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCAAGAAACGGGCATACGGG
* * * * *
29031144 CGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCTGTCCCCCCTGCGTGTTA
196 CGCTCAACCAGTCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTA
* * * * * *
29031209 CCGATCCTACTACCGTAACCCTCGGTCCGGTTTGATCTTAGACTGTGAATGAACTTTGTATGCTT
261 CCGATCCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAAGCTT
*
29031274 AGACTGGGGATGAACTTC
326 AGACGGGGGATGAACTTC
* *
29031292 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAAGCAGAATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAGAAGCAGAATGCG
* * * *
29031357 TAAGCCAAGGATAGGCCCGGTCCCCCTCTGCGTGCTATC-GGTCCCGTTGCCATAACCCTCGGTC
66 CAAGCCAAGGATAGGCCCGGTCCCCCTCTGCGTGCT-GCAGGTCCCGCTGCCACAACCCTCGGTC
* * *
29031421 TGGCTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCAAGAAACGGGCGTACGG
130 CGACTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCAAGAAACGGGCATACGG
* * * *
29031486 GTGCTCAACCAGTCTGG-GAGGCAGAATACGCAAGCTGAGGATCGACCCGGTCTCCCTTGCGTGC
195 GCGCTCAACCAGTC-GGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGC
** * * * *
29031550 TGTCGATCCTGCTATCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAGTGAACTTCGTAAGC
259 TACCGATCCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAAGC
29031615 TTAGACGGGGGATGAACTTC
324 TTAGACGGGGGATGAACTTC
* * * *
29031635 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGA
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAGA
29031689 GGCTGGCTGG
Statistics
Matches: 344, Mismatches: 51, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
343 341 0.99
344 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (343 bp):
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAGAAGCAGAATGCG
CAAGCCAAGGATAGGCCCGGTCCCCCTCTGCGTGCTGCAGGTCCCGCTGCCACAACCCTCGGTCC
GACTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCAAGAAACGGGCATACGGG
CGCTCAACCAGTCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTA
CCGATCCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTAAGCTT
AGACGGGGGATGAACTTC
Found at i:29031630 original size:26 final size:26
Alignment explanation
Indices: 29031588--29031637 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29031578 CTGATCTGAT
*
29031588 CTTAGACTGGGAGTGAACTTCGTAAG
1 CTTAGACGGGGAGTGAACTTCGTAAG
29031614 CTTAGACGGGG-GATGAACTTCGTA
1 CTTAGACGGGGAG-TGAACTTCGTA
29031638 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAGTGAACTTCGTAAG
Found at i:29031827 original size:26 final size:26
Alignment explanation
Indices: 29031798--29031850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29031788 CCGATCCGAT
29031798 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29031824 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29031850 C
1 C
29031851 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29032215 original size:159 final size:159
Alignment explanation
Indices: 29031965--29032411 Score: 513
Period size: 159 Copynumber: 2.8 Consensus size: 159
29031955 CCAGTCCGAT
* * * * * * *
29031965 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACTAGCGTTCGGGTGTTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
* * ** * *
29032029 CCGGTCGGAGAGGCATGATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGCTTGCTGTCGGTC
65 CCGGCCGGAGAGACAAAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATC
* **
29032094 CCATTGCCACAACCCTCTTTCCACCTAGGG
130 CCACTGCCACAACCCTCGGTCCACCTAGGG
* * *
29032124 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGC
* ** * *
29032189 CGGCCAGAGAGACAAAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCGGAGAGACAAAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
29032254 CGCTGCCATAACCCTCGGTCTAGCTGGGG
131 CACTGCCACAACCCTCGGTCCACCTAGGG
* *
29032283 CTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGC
* * * * * * *
29032348 CGGCCGGAGAGGCAGAATACACAAGCC-ATGGATCGGCCCGGT-CCCCTCTACGTGCTGTCAATC
66 CGGCCGGAGAGACAAAATGCACAAGCCGA-GGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATC
29032411 C
130 C
29032412 TGCTGCCGAA
Statistics
Matches: 245, Mismatches: 41, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
158 21 0.09
159 223 0.91
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGC
CGGCCGGAGAGACAAAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATCC
CACTGCCACAACCCTCGGTCCACCTAGGG
Found at i:29033330 original size:158 final size:158
Alignment explanation
Indices: 29033039--29033364 Score: 397
Period size: 158 Copynumber: 2.1 Consensus size: 158
29033029 GCTTAGGCAT
* * ** *
29033039 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAATCGAGCATACGGGTGCTCAGTCGACCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAATCGAGCATACGGGCGCTCAACCGACCGAAG
** * * * * * *
29033104 AGGCAGAATGTGCAAGCCGAGGACTGGCTCGGTGCCCCCTACTTGCTGTCGATCCTGCTGCCGTA
66 AGGCAGAATGCACAAGCCGAGGACTAGCTCCGTGCCCCCTACATGCTGTCGATCCCGCTACCGCA
*
29033169 ACCCTCAGTCTGGTCTGATCTTAGACTG
131 ACCCTCAATCTGGTCTGATCTTAGACTG
* * * *
29033197 GGAATGAACTCCATATGCCTAAGCCAACCGATGAAAT-GGGCGTGCGGGCGCTCAACCGACCGAA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATG-AATCGAGCATACGGGCGCTCAACCGACCGAA
* * * *
29033261 GAGGCAGAATGCATAAGTCGAGGA-TCAG-TCCGTTCCCTCCTGCATGCTGTCGATCCCGCTACC
65 GAGGCAGAATGCACAAGCCGAGGACT-AGCTCCGTGCCC-CCTACATGCTGTCGATCCCGCTACC
*
29033324 GCAACCCTCAATCTGGTCTGATCTTAGATTG
128 GCAACCCTCAATCTGGTCTGATCTTAGACTG
29033355 GGAATGAACT
1 GGAATGAACT
29033365 TCACATTCTT
Statistics
Matches: 142, Mismatches: 23, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
157 8 0.06
158 131 0.92
159 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCATGAATCGAGCATACGGGCGCTCAACCGACCGAAG
AGGCAGAATGCACAAGCCGAGGACTAGCTCCGTGCCCCCTACATGCTGTCGATCCCGCTACCGCA
ACCCTCAATCTGGTCTGATCTTAGACTG
Found at i:29034117 original size:26 final size:26
Alignment explanation
Indices: 29034079--29034128 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29034069 GGCACAAACT
29034079 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29034105 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
29034129 CGCCTAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29034456 original size:25 final size:26
Alignment explanation
Indices: 29034422--29034473 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
29034412 CTAATCTGAT
29034422 CTTACACT-GGAAATGAACT-CGTATG
1 CTTACACTGGGAAA-GAACTCCGTATG
* *
29034447 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
29034473 C
1 C
29034474 CTAAGCCAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAAAGAACTCCGTATG
Found at i:29034645 original size:26 final size:26
Alignment explanation
Indices: 29034616--29034666 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29034606 CCAATCCGAT
29034616 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29034642 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
29034667 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29035146 original size:158 final size:157
Alignment explanation
Indices: 29034642--29035143 Score: 456
Period size: 158 Copynumber: 3.2 Consensus size: 157
29034632 ACTCCGTATG
* * * * * *
29034642 CTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCAACGAAATGAGCGTGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* ** * * * * *
29034707 CGATCGGAGAGGCAGAATGCGCAAGTCAAGGACCAGACCGGTCCTCCCTTCATGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCTGTCCCCCCTACGTGCTGTCGATCCT
* * *
29034772 ACTACTGCAACCCTCAGTCCGATCCGAT
130 GCTACTGCAACCCTCAGTCTGGTCCGAT
* * * * * * * * *
29034800 ATTAGAC-TAAGAATGCACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * *
29034864 CTGATCGGAGATGCATAATGCGTAGGCCGGGGATCGACCTGGTCCCCCTCTACGTGTTGTCGATC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCT-GTCCCCC-CTACGTGCTGTCGATC
* ** * **
29034929 CCGCTACCACAACCCTC-GATCTGG-CTGGGG
128 CTGCTACTGCAACCCTCAG-TCTGGTC-CGAT
* * * *
29034959 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAATGGGCGTACGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * **
29035024 CGA-CAGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCTATCCCCCCTGCGTGCTACCGATCC
66 CGATC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CTGTCCCCCCTACGTGCTGTCGATCC
*
29035088 TGCTACTGCAACCCTCAGTCTGGTCCAAT
129 TGCTACTGCAACCCTCAGTCTGGTCCGAT
29035117 CTTAGAC-TGGTAATGAACTCCGTATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
29035144 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 8 0.03
158 136 0.51
159 119 0.45
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGTCCCCCCTACGTGCTGTCGATCCTG
CTACTGCAACCCTCAGTCTGGTCCGAT
Found at i:29035158 original size:26 final size:26
Alignment explanation
Indices: 29035117--29035169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29035107 CTGGTCCAAT
*
29035117 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29035143 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29035169 C
1 C
29035170 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29035495 original size:26 final size:26
Alignment explanation
Indices: 29035466--29035518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29035456 TCGGTCTGAT
*
29035466 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29035492 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29035518 C
1 C
29035519 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29035691 original size:26 final size:26
Alignment explanation
Indices: 29035662--29035714 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29035652 CTAATCCGAT
29035662 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29035688 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29035714 C
1 C
29035715 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29035762 original size:196 final size:196
Alignment explanation
Indices: 29035463--29035817 Score: 566
Period size: 196 Copynumber: 1.8 Consensus size: 196
29035453 CACTCGGTCT
*
29035463 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** * * * **
29035528 CCCATGAAACTAGCGTGCGGGTGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATTGG
66 CCAACGAAACGAGCATGCGGGCACTCAACCGACCGAAGAGGCACAATACGCAAGTCGGGGATCAG
*
29035593 CCCGATCCCCCCTGCATGCTGTCGATCCTGCTGTTGGTCCTACTGTCGCAACCCTCAGTCTAATC
131 ACCGATCCCCCCTGCATGCTGTCGATCCTGCTGTTGGTCCTACTGTCGCAACCCTCAGTCTAATC
29035658 C
196 C
*
29035659 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
29035724 CCAACGAAACGAGCATGCGGGCACTCAACCGACCGAAGAGGCACAATACGCAAGTCGGGGATCAG
66 CCAACGAAACGAGCATGCGGGCACTCAACCGACCGAAGAGGCACAATACGCAAGTCGGGGATCAG
* *
29035789 ACCGATCCCCCCTTCGTGCTGTCGATCCT
131 ACCGATCCCCCCTGCATGCTGTCGATCCT
29035818 ACTACTGCAA
Statistics
Matches: 143, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
196 143 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (196 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCAACGAAACGAGCATGCGGGCACTCAACCGACCGAAGAGGCACAATACGCAAGTCGGGGATCAG
ACCGATCCCCCCTGCATGCTGTCGATCCTGCTGTTGGTCCTACTGTCGCAACCCTCAGTCTAATC
C
Found at i:29036178 original size:157 final size:157
Alignment explanation
Indices: 29035688--29036191 Score: 419
Period size: 158 Copynumber: 3.2 Consensus size: 157
29035678 ACTCCGTATG
** * * * * * * *
29035688 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCATATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAG
* * * * * * *
29035752 CCGAC-CGAAGAGGCACAATACGCAAGTCGGGGATCAGACCGATCCCCCCTTCGTGCTGTCGATC
65 CC-ACTCGGAGATGCATAATGCGCAAGCCGGGGATC-GACCTATCCCCCCTGCGTGCTGTCGATC
** *
29035816 CTACTACTGCAACCCTCGGTCCGGTCCGAT
128 CTACTACCACAACCCTCGGTCCGGTCTGAT
* * * ** * * *
29035846 CTTAGACTGAGAATGCACTCCATATGCCTAAGTTAACCCACGAAGCGAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGC
* * * * * * * *
29035911 CAGTCGGAGATGCATAATGTGTAGGCTGGGGATCGGCCTGGTCCCCCTCTGCGTGTTGTCGATCC
66 CACTCGGAGATGCATAATGCGCAAGCCGGGGATCGACCT-ATCCCCC-CTGCGTGCTGTCGATCC
* * * **
29035976 TACTGCCACAACCCTCGATCTGG-CTGGGG
129 TACTACCACAACCCTCGGTCCGGTCT-GAT
* * * *
29036005 CTTAGACAT-GGAATGAACTCCCTATGCTTAAGCCAACCCACGAAATGGGCGTACGGGCGCTTAG
1 CTTAGAC-TGGGAATGAACTCCATATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAG
**
29036069 CCAACT-GGAGA-GACA-AATGCGCAAGCCGGGGATCGACTCTATCCCCCCTGCGTGCTACCGAT
65 CC-ACTCGGAGATG-CATAATGCGCAAGCCGGGGATCGAC-CTATCCCCCCTGCGTGCTGTCGAT
* *
29036131 CCTGCTACCATAACCCTCGGTCCGGTCTGAT
127 CCTACTACCACAACCCTCGGTCCGGTCTGAT
* *
29036162 CTTAGACTGGGAATGAACTTCGTATGCTTA
1 CTTAGACTGGGAATGAACTCCATATGCTTA
29036192 GACTGGGGAT
Statistics
Matches: 267, Mismatches: 68, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 64 0.24
158 104 0.39
159 95 0.36
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGC
CACTCGGAGATGCATAATGCGCAAGCCGGGGATCGACCTATCCCCCCTGCGTGCTGTCGATCCTA
CTACCACAACCCTCGGTCCGGTCTGAT
Found at i:29036198 original size:26 final size:26
Alignment explanation
Indices: 29036162--29036212 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29036152 CCGGTCTGAT
*
29036162 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29036188 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
29036213 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29036552 original size:26 final size:26
Alignment explanation
Indices: 29036516--29036568 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29036506 CCAGTCTAAT
*
29036516 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29036542 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29036568 C
1 C
29036569 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29036751 original size:354 final size:353
Alignment explanation
Indices: 29035982--29036731 Score: 1302
Period size: 354 Copynumber: 2.1 Consensus size: 353
29035972 ATCCTACTGC
* **
29035982 CACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACG
1 CACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACG
29036047 AAATGGGCGTACGGGCGCTTAGCCAACTGGAGAGACAAATGCGCAAGCCGGGGATCGACTCTATC
66 AAATGGGCGTACGGGCGCTTAGCCAACTGGAGAGACAAATGCGCAAGCCGGGGATCGACTCTATC
* *
29036112 CCCCCTGCGTGCTACCGATCCTGCTACCATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
131 CCCCCTGCGTGCTACCGATCCTGCTACCATAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATG
*
29036177 AACTTCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCAAGGAACGAGCGTGC
196 AACTTCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCAAGGAACGAGCGTAC
* *
29036242 GGCACTCAGCTAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAACTCGATCCCATTCTACGTG
261 GACACTCAGCCAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAACTCGATCCCATTCTACGTG
* *
29036307 CTATCGATCTCGCTGTCAGTCCTGCTAT
326 CTATCGATCTCACTATCAGTCCTGCTAT
29036335 CACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACG
1 CACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACG
* * * * *
29036400 ACATGGGCGTACGGGCGCTTGGCCGACTGGAGAGACAGAATGCGCAAGCTGGGGATCGGCTCTAT
66 AAATGGGCGTACGGGCGCTTAGCCAACTGGAGAGACA-AATGCGCAAGCCGGGGATCGACTCTAT
*
29036465 CCCCCCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCCAGTCTAATCTTAGACTGGGAAT
130 CCCCCCTGCGTGCTACCGATCCTGCTACCATAACCCTCGGTCCAGTCTAATCTTAGACTGGGAAT
*
29036530 GAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGGAACGAGCGTA
195 GAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCAAGGAACGAGCGTA
29036595 CGACACTCAGCCAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAACTCGATCCCATTCTACGT
260 CGACACTCAGCCAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAACTCGATCCCATTCTACGT
**
29036660 GCTATCGATCTCACTATTGGTCCTGCTAT
325 GCTATCGATCTCACTATCAGTCCTGCTAT
* *
29036689 CACAACCCTCGGTCCGATTGGGGCTTAGACATAGAATGAACTC
1 CACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTC
29036732 TGTATCACTA
Statistics
Matches: 375, Mismatches: 21, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
353 96 0.26
354 279 0.74
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (353 bp):
CACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACG
AAATGGGCGTACGGGCGCTTAGCCAACTGGAGAGACAAATGCGCAAGCCGGGGATCGACTCTATC
CCCCCTGCGTGCTACCGATCCTGCTACCATAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATG
AACTTCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCAAGGAACGAGCGTAC
GACACTCAGCCAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAACTCGATCCCATTCTACGTG
CTATCGATCTCACTATCAGTCCTGCTAT
Found at i:29036888 original size:26 final size:26
Alignment explanation
Indices: 29036850--29036902 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29036840 CCGATCTGAT
*
29036850 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
29036876 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
29036902 C
1 C
29036903 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:29037149 original size:196 final size:196
Alignment explanation
Indices: 29036805--29037198 Score: 504
Period size: 196 Copynumber: 2.0 Consensus size: 196
29036795 TGTGTTGCCA
* *
29036805 ATCCTGCTGCTGGTCCTGCTACCGCAACTCTCGGCCCGATCTGATCTTAGACTGGGAATGAACTC
1 ATCCTGCTGCTGGTCCTGCTACCGCAACCCACGGCCCGATCTGATCTTAGACTGGGAATGAACTC
* * * **
29036870 CGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACTAGTGTGCGGGTG
66 CGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACG
* * * ** * *
29036935 CTCAGTCGACTAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCATGCTGTC
131 CTCAATCGACTAGAGAGGCAAAATGCGCAAGCCAGGGACCAACCCGATCCCCCCTACATGCTGTC
29037000 G
196 G
* ** * * * *
29037001 ATCCTGCTGCTGGTCTTGCTGTCGCAACCCAGGGTCCGGTCTGATCTTACG-TTGGGAATGAACT
1 ATCCTGCTGCTGGTCCTGCTACCGCAACCCACGGCCCGATCTGATCTTA-GACTGGGAATGAACT
* *
29037065 CTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGAC
65 CCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGAC
* * * * *
29037130 GCTCAATC-AGTCGGAGAGGCAAAATGCGCAAGTCGGGGACCAACCCGATCCCCCCTACGTGCTG
130 GCTCAATCGACT-AGAGAGGCAAAATGCGCAAGCCAGGGACCAACCCGATCCCCCCTACATGCTG
29037194 TCG
194 TCG
29037197 AT
1 AT
29037199 TTTACTATCA
Statistics
Matches: 168, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
195 2 0.01
196 165 0.98
197 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (196 bp):
ATCCTGCTGCTGGTCCTGCTACCGCAACCCACGGCCCGATCTGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACG
CTCAATCGACTAGAGAGGCAAAATGCGCAAGCCAGGGACCAACCCGATCCCCCCTACATGCTGTC
G
Found at i:29037426 original size:159 final size:158
Alignment explanation
Indices: 29037071--29037465 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 158
29037061 AACTCTGTAT
* * * *
29037071 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
29037136 TC-AGTCGGAGAGGCAAAATGCGCAAGTCGGGGACCAACCCGATCCCCCCTACGTGCTGTCGATT
66 CCGA-TCGGAGAGGCAAAATGCGCAAGTCAGGGAACAACCCGATCCCCCCTACGTGCTGCCGATC
** * * *
29037200 TTACTATCACAACCCTCGGTCTGGTCCGA
130 CCACTACCACAACCCTCGGTCCGCTCCGA
* * * * * * * *
29037229 TCTTAGAC-TGGGAATAAAGTCTGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* *** * * *
29037293 GCCGATCGGAGAGGCATAATGCGCAAGTCAGGGAATGGCCCGATCCCTCTCTGCGTGCTGCCGGT
65 GCCGATCGGAGAGGCAAAATGCGCAAGTCAGGGAACAACCCGATCCC-CCCTACGTGCTGCCGAT
* * * *
29037358 CCCGCTGCCACAACCCTCGGTCCGACT-GGG
129 CCCACTACCACAACCCTCGGTCCG-CTCCGA
* *
29037388 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
**
29037453 CCGGCCGGAGAGG
66 CCGATCGGAGAGG
29037466 TAGAATACCC
Statistics
Matches: 188, Mismatches: 44, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 89 0.47
159 96 0.51
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCGGAGAGGCAAAATGCGCAAGTCAGGGAACAACCCGATCCCCCCTACGTGCTGCCGATCC
CACTACCACAACCCTCGGTCCGCTCCGA
Found at i:29037496 original size:159 final size:158
Alignment explanation
Indices: 29037071--29037573 Score: 377
Period size: 158 Copynumber: 3.2 Consensus size: 158
29037061 AACTCTGTAT
* * * * *
29037071 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCA
** * * * * * * **** **
29037135 ATC-AGTCGGAGAGGCAAAATGCGCAAGTCGGGGACCAACCCGATCCCCCCTACGTGCTGTCGAT
65 GCCGA-CCGGAGAGGCAGAATACCCAAGACAGGGAATGGCCCGATCCCCCCTACGTGCTACCGAT
**** ** * * * *
29037199 TTTACTATCACAACCCTCGGTCTGGTCCGA
129 CCCGCTGCCACAACCCTCAGTCCGATCTGA
* * * ** * * *
29037229 TCTTAGACTGGGAATAAAGTCTGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * * * * * * *
29037294 CCGATCGGAGAGGCATAATGCGCAAGTCAGGGAATGGCCCGATCCCTCTCTGCGTGCTGCCGGTC
66 CCGACCGGAGAGGCAGAATACCCAAGACAGGGAATGGCCCGATCCC-CCCTACGTGCTACCGATC
* *
29037359 CCGCTGCCACAACCCTCGGTCCGA-CTGGG
130 CCGCTGCCACAACCCTCAGTCCGATCT-GA
* *
29037388 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCA
* * * * * *
29037452 GCCGGCCGGAGAGGTAGAATACCCAAGAC-GAGGATTGGCTCGATCCCCCCTATGTGCTATCGAT
65 GCCGACCGGAGAGGCAGAATACCCAAGACAG-GGAATGGCCCGATCCCCCCTACGTGCTACCGAT
* *
29037516 CCTGCTGTCACAACCCTCAGTCCGATCTGA
129 CCCGCTGCCACAACCCTCAGTCCGATCTGA
* *
29037546 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCCTATGC
29037574 TTAGACTGAG
Statistics
Matches: 274, Mismatches: 63, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 149 0.54
159 122 0.45
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
CCGACCGGAGAGGCAGAATACCCAAGACAGGGAATGGCCCGATCCCCCCTACGTGCTACCGATCC
CGCTGCCACAACCCTCAGTCCGATCTGA
Found at i:29037576 original size:26 final size:26
Alignment explanation
Indices: 29037547--29037599 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29037537 CCGATCTGAT
29037547 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
29037573 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
29037599 C
1 C
29037600 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:29037790 original size:697 final size:695
Alignment explanation
Indices: 29036840--29038367 Score: 1778
Period size: 696 Copynumber: 2.2 Consensus size: 695
29036830 AACTCTCGGC
* *
29036840 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGCATGCCT
1 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCCGTATGCCT
* * *
29036905 AAGCCAACCCACGAAACTAGTGTGCGGGTGCTCAGTCGACTAGAGAGGCAGAATGCGCAAGCCAG
65 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACTAGAGAGGCAGAATGCGCAAGCCAG
* * * * * * *
29036970 GGATCGGCCTGATCCCCCCTGCATGCTGTCGATCCTGCTGCTGGTCTTGCTGTCGCAACCCAGGG
130 GGATCGGCCCGATCCACCCTGCATACTCTCGATCCTACTGCTGGTCCTGCTGTCGCAACCCACGG
* * * * **
29037035 TCCGGTCTGATCTTACGTTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCC
195 TCCGGTCCGATCATACGCTGGGAATGAACTCCGTATGCTTAGACATGGAACAAACTCCGTATGCC
* * * * *
29037100 TAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAATCA-GTCG-GAGAGGCAAAATGCGCAAGT
260 TAAGCCAACCCACAAAACGAGCGTACGGACGCTC-AGCAGGTCGAAAAAGG-AAAATGCGCAAGC
** * ** *
29037163 CGGGGACCAACCCGATCCCCCCTACGTGCTGTCGATTTTACTATCA-CAACCCTCGG-TCTGGTC
323 CGAAGACCAACCCGATCCCCCCTACATGCTGTCGATCCTACTA-CAGCAACCCTCGGTTC-AGTC
* * * *
29037226 CGATCTTAGACTGGGAAT-AAAGTCTGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGC
386 CGATCTTAGACTAGGAATGAAA-TCTGT-TGCCTAAGTCAACCCACAAAACGAGCATGCAGGCGC
* * * * * *
29037290 TGAGCCGATCGGAGAGGCATAATGC-GCAAGTCAG-GGAAT-GGCCCGATCCCTCTCTGCGTGCT
449 TGAGCCGACCGAAAAGGCATAAT-CTGAAAG-CAGAGG-ATCGACCCGATCCCTCTCTACGTGCT
29037352 GCCGGTCCCGCTGCCACAACCCTCGGTCC-GACTGGG-GCTTAGACATGGAATGAACTCCCTATG
511 GCCGGTCCCGCTGCCACAACCCTCGGTCCAG-C-GGGAGCTTAGACATGGAATGAACTCCCTATG
* * * * *
29037415 CCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG-CCGGCCGGAGAGGTAGAATACCCAAG
574 CCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAGTCC-GCCAGAGAGGCAAAATACACAA-
*** * * *
29037479 A-CGAGGATTGGCTCGATCCCCCCTATGTGCTATCGATCCTGCTGTCACAACCCTCAGT
637 ATCGAGGATCAACTCGATCCCCCATACGTGCTATCGATCCTGCTGTCACAACCATCAGT
29037537 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCT
1 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GGATGAACTCCGTATGCCT
* * *
29037602 AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC-AGTCAGAGAGGCAGAATGCGCAAG-CT
65 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACT-AGAGAGGCAGAATGCGCAAGCCA
* * * * * *
29037665 GGGAATTGGCCCGATCTACCCTGCGTACTACT-GATCCTACTGTTGGTCCTGTTGTCGCAACCCT
129 GGG-ATCGGCCCGATCCACCCTGCATACT-CTCGATCCTACTGCTGGTCCTGCTGTCGCAACCCA
29037729 CGGTCCGGTCCGATCATA-GACTGGGAATGAACTCCGTATGCTTAGACATGGAACAAACTCCGTA
192 CGGTCCGGTCCGATCATACG-CTGGGAATGAACTCCGTATGCTTAGACATGGAACAAACTCCGTA
* * ** * * *
29037793 TGCCTAAGCCAACCCACGAAATGTTCGTACGGGCGCTCAGCAGGTCGAAAAAGGAGAATGGGCAA
256 TGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAGCAGGTCGAAAAAGGAAAATGCGCAA
* ** ** *
29037858 GCCGAAGACCGACGTGATCCCCCCTGTATGCTGTCGATCCTGCTACAGCAACCCTCGGTTCAGTC
321 GCCGAAGACCAACCCGATCCCCCCTACATGCTGTCGATCCTACTACAGCAACCCTCGGTTCAGTC
* * * *
29037923 TGATCTTAGACTAGGAATGAAATCTGTTGCCTAAGTCAACCCACAAAATGAGCGTGCAGGTGCTG
386 CGATCTTAGACTAGGAATGAAATCTGTTGCCTAAGTCAACCCACAAAACGAGCATGCAGGCGCTG
* * * *
29037988 AGCCGGCCGAAAAGGCATAATCTGAAAGCCGAGGATCGACCCGGTCCCTCTCTACGTGCTGTCGG
451 AGCCGACCGAAAAGGCATAATCTGAAAGCAGAGGATCGACCCGATCCCTCTCTACGTGCTGCCGG
* *
29038053 TCCCGTTGCGACAACCCTCGGTCCAGCGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
516 TCCCGCTGCCACAACCCTCGGTCCAGCGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * ** * *
29038118 CAACCCATGAAATGGGTGTGCGGGCACTCAGTCCGTTAGAGAGGCAAAATGCATAAATCGAGGAT
581 CAACCCACGAAACGGGCGTACGGGCACTCAGTCCGCCAGAGAGGCAAAATACACAAATCGAGGAT
* * **
29038183 CAACTCGGTCCCTCATACGTGCTATCGATCCTGCTGTTGCAACCATCAGT
646 CAACTCGATCCCCCATACGTGCTATCGATCCTGCTGTCACAACCATCAGT
* * * *
29038233 CCGGTCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCT
1 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCT
* * * * * * *
29038298 AAGTCAACCCACGAAACGAGCATGTGGACGCTCAG-CTGACCAGATAGGCA-AGATGCGTAAGCC
65 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GACTAGAGAGGCAGA-ATGCGCAAGCC
*
29038361 GGGGATC
128 AGGGATC
29038368 AAACAGATGG
Statistics
Matches: 700, Mismatches: 109, Indels: 45
0.82 0.13 0.05
Matches are distributed among these distances:
695 11 0.02
696 344 0.49
697 335 0.48
698 10 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (695 bp):
CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACTAGAGAGGCAGAATGCGCAAGCCAGG
GATCGGCCCGATCCACCCTGCATACTCTCGATCCTACTGCTGGTCCTGCTGTCGCAACCCACGGT
CCGGTCCGATCATACGCTGGGAATGAACTCCGTATGCTTAGACATGGAACAAACTCCGTATGCCT
AAGCCAACCCACAAAACGAGCGTACGGACGCTCAGCAGGTCGAAAAAGGAAAATGCGCAAGCCGA
AGACCAACCCGATCCCCCCTACATGCTGTCGATCCTACTACAGCAACCCTCGGTTCAGTCCGATC
TTAGACTAGGAATGAAATCTGTTGCCTAAGTCAACCCACAAAACGAGCATGCAGGCGCTGAGCCG
ACCGAAAAGGCATAATCTGAAAGCAGAGGATCGACCCGATCCCTCTCTACGTGCTGCCGGTCCCG
CTGCCACAACCCTCGGTCCAGCGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGGCGTACGGGCACTCAGTCCGCCAGAGAGGCAAAATACACAAATCGAGGATCAACT
CGATCCCCCATACGTGCTATCGATCCTGCTGTCACAACCATCAGT
Found at i:29038284 original size:26 final size:26
Alignment explanation
Indices: 29038243--29038295 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29038233 CCGGTCCGAT
*
29038243 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
29038269 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
29038295 C
1 C
29038296 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:29039528 original size:26 final size:26
Alignment explanation
Indices: 29039499--29039551 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29039489 CTGGTTCGAT
29039499 CTTAGAC-TAGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
29039525 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
29039551 C
1 C
29039552 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:29039709 original size:184 final size:190
Alignment explanation
Indices: 29039148--29040000 Score: 631
Period size: 184 Copynumber: 4.5 Consensus size: 190
29039138 CCCGACTGGG
* * ** *
29039148 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
** * * * * * * * *
29039213 TCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCC-C---CT-T--GCGTGCTG
66 TCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATAG-CCCGATCCCGCATGCTGTCATCCTGTTG
* * ** ** * * * *
29039271 CCGATCTTGTTGCCACAACCCTCGGT-TCGATTCGATCTTAGATTGGGAATGAACTCCGCAA
130 CTGATCCTACTGCCGTAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
29039332 GCTTAGAC-TAGAGATGAACTTCTTATGCCTAAGTCAACACACGAAACGAGCGT----AT-CTTA
1 GCTTAGACATGGA-ATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* ** * * * * * *
29039391 GCCGGTCGGAAAGGTAAAATGCGCAAGCC-AGGGATCGACCC-AGTCCCCCCTTGCATGCTGCCG
65 GTCGACCGGAGAGGCAGAATGTGCAAGCCGA-GGATAG-CCCGA-T---CCC--GCATGCTGTC-
* * * ** * * * *
29039454 ATCCTGTTACTGGTCCTGCTATCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTT
121 ATCCTGTTGCTGATCCTACTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTC
29039519 CGTAT
186 CGTAT
*
29039524 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* ** *
29039589 TCGACCGGAGAGGCAGAATGTGCAAGCCTAGGATCAGTTCGAT-CC-C-T-CT-T-A-CGTGTTG
66 TCGACCGGAGAGGCAGAATGTGCAAGCCGAGGAT-AGCCCGATCCCGCATGCTGTCATCCTGTTG
* *
29039647 CTGATCCTACTGCCGTAACCCTTGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTAT
130 CTGATCCTACTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
29039708 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* *** *
29039772 ATCGGTTGGAGAGGCAGAATGCGCAAGCCGAGGATAGCCCGATCCCCCCTGCATGCTGTCGATCC
65 GTCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATAGCCCGAT---CCC-GCATGCTGTC-ATCC
* * * * *
29039837 TGTTGCTGGTCGTACTGCTGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
125 TGTTGCTGATCCTACTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
29039902 T
190 T
* * * *
29039903 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * *
29039968 -CCAGCCGGAGAGGGAAAATGTGCAAGCCGAGGA
66 TCGA-CCGGAGAGGCAGAATGTGCAAGCCGAGGA
29040001 CTGGTCCGAT
Statistics
Matches: 517, Mismatches: 111, Indels: 71
0.74 0.16 0.10
Matches are distributed among these distances:
179 34 0.07
180 1 0.00
182 3 0.01
183 10 0.02
184 182 0.35
185 2 0.00
187 2 0.00
188 4 0.01
189 2 0.00
190 2 0.00
191 2 0.00
192 93 0.18
193 6 0.01
194 2 0.00
195 136 0.26
196 2 0.00
197 31 0.06
198 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (190 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
TCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATAGCCCGATCCCGCATGCTGTCATCCTGTTGC
TGATCCTACTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:29039712 original size:26 final size:26
Alignment explanation
Indices: 29039683--29039735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29039673 CTGATCCGAT
29039683 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
29039709 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
29039735 C
1 C
29039736 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:29039929 original size:26 final size:26
Alignment explanation
Indices: 29039878--29039930 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29039868 CTGATCCGAT
*
29039878 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29039904 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29039930 C
1 C
29039931 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29039959 original size:379 final size:376
Alignment explanation
Indices: 29039148--29040080 Score: 1020
Period size: 379 Copynumber: 2.5 Consensus size: 376
29039138 CCCGACTGGG
* * *
29039148 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
** * * * * *
29039213 TCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGCCGATCT
66 TCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACTCGATCCCCCTTACGTGCTGCCGATCC
** * * *
29039278 TGTTGCCACAACCCTCGGTTCGATTCGATCTTAGATTGGGAATGAACTCCGCAAGCTTAGACTAG
131 TACTGCCACAACCCTCGGTTCGATCCGATCTTAAACTGGGAATGAACTCCGCAAGCTTAGACTAG
* * * * * * *
29039343 AGATGAACTTCTTATGCCTAAGTCAACACACGAAACGAGCGTATCTTAGCCGGTCGGAAAGGTAA
196 AGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGGAGCTCAACCGGTCGGAAAGGCAA
* *
29039408 AATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTTGCATGCTGCCGATCCTGTTACTGGTCCTGC
261 AATGCGCAAGCCAGGGATAGACCCAGTCCCCCCTTGCATGCTGCCGATCCTGTTACTGGTCCTAC
* * * * *
29039473 TATCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTTCGTAT
326 TATCGCAACCCTCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* *
29039524 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * * * *
29039589 TCGACCGGAGAGGCAGAATGTGCAAGCCTAGGATC-AGTTCGATCCCTCTTACGTGTTGCTGATC
66 TCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGA-CTCGATCCCCCTTACGTGCTGCCGATC
** * * *
29039653 CTACTGCCGTAACCCTTGG-TCTGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACT
130 CTACTGCCACAACCCTCGGTTC-GATCCGATCTTAAACTGGGAATGAACTCCGCAAGCTTAGACT
* * * * * * * *
29039717 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCGCTCAATCGGTTGGA
194 AGAGATGAACTCCGTATGCCTAAGTCAACACACGAAAC----GAGC-GGAGCTCAACCGGTCGGA
* * * *
29039782 GAGGCAGAATGCGCAAGCC-GAGGATAG-CCC-GATCCCCCC-TGCATGCTGTCGATCCTGTTGC
254 AAGGCAAAATGCGCAAGCCAG-GGATAGACCCAG-TCCCCCCTTGCATGCTGCCGATCCTGTTAC
* * *
29039843 TGGTCGTACT-GCTGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
317 TGGTCCTACTATC-GCAACCCTCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* * *
29039903 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * * * * * ** **
29039968 -CCAGCCGGAGAGGGAAAATGTGCAAGCCGAGGACTGGTC-CGATCCCCCCTGTGTGCTATCGAT
66 TCGA-CCGGAGAGGCAGAATGTGCAAGCCGAGGA-TCGACTCGATCCCCCTTACGTGCTGCCGAT
* * * * * *
29040031 CCTGCTGCCACAACCCTCGGTCCGATCTGAACTTAGACCGGGAATGAACT
129 CCTACTGCCACAACCCTCGGTTCGATCCGATCTTAAACTGGGAATGAACT
29040081 GCGTATGCCT
Statistics
Matches: 459, Mismatches: 84, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
375 3 0.01
376 194 0.42
378 3 0.01
379 211 0.46
380 16 0.03
381 32 0.07
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (376 bp):
GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
TCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACTCGATCCCCCTTACGTGCTGCCGATCC
TACTGCCACAACCCTCGGTTCGATCCGATCTTAAACTGGGAATGAACTCCGCAAGCTTAGACTAG
AGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGGAGCTCAACCGGTCGGAAAGGCAA
AATGCGCAAGCCAGGGATAGACCCAGTCCCCCCTTGCATGCTGCCGATCCTGTTACTGGTCCTAC
TATCGCAACCCTCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:29039980 original size:195 final size:196
Alignment explanation
Indices: 29039642--29040034 Score: 495
Period size: 195 Copynumber: 2.0 Consensus size: 196
29039632 CCCTCTTACG
* * *
29039642 TGTTGCTGATCCTACTGCCGTAACCCTTGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTA
1 TGTTGCTGATCCTACTGCCGCAACCCTCGATCTGATCCGATCTTAAACTGGGAATGAACTCCGTA
* * * * *
29039707 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCGCTCA
66 TGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
* * ** * *
29039772 ATCGGTTGGAGAGGCAGAATGCGCAAGCCGAGGA-TAGCCCGATCCCCCCTGCATGCTGTCGATC
131 ACCAGCCGGAGAGGCAAAATGCGCAAGCCGAGGACTAGCCCGATCCCCCCTGCATGCTATCGATC
29039836 C
196 C
* * * *
29039837 TGTTGCTGGTCGTACTGCTGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
1 TGTTGCTGATCCTACTGCCGCAACCCTCGATCTGATCCGATCTTAAACTGGGAATGAACTCCGTA
* ** *
29039902 TGCTTAGACAT-GGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCT-
66 TGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTC
* * * * **
29039965 AAGCCAGCCGGAGAGGGAAAATGTGCAAGCCGAGGACTGGTCCGATCCCCCCTGTGTGCTATCGA
130 AA-CCAGCCGGAGAGGCAAAATGCGCAAGCCGAGGACTAGCCCGATCCCCCCTGCATGCTATCGA
29040030 TCC
194 TCC
29040033 TG
1 TG
29040035 CTGCCACAAC
Statistics
Matches: 167, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
194 2 0.01
195 136 0.81
196 29 0.17
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (196 bp):
TGTTGCTGATCCTACTGCCGCAACCCTCGATCTGATCCGATCTTAAACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
ACCAGCCGGAGAGGCAAAATGCGCAAGCCGAGGACTAGCCCGATCCCCCCTGCATGCTATCGATC
C
Found at i:29040408 original size:26 final size:26
Alignment explanation
Indices: 29040379--29040431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29040369 CCGGTCGGAT
*
29040379 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTACGTATG
* *
29040405 CTTAGACTGGGGATGAACTACGTATG
1 CTTACACTGGGAATGAACTACGTATG
29040431 C
1 C
29040432 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTACGTATG
Found at i:29041980 original size:26 final size:26
Alignment explanation
Indices: 29041942--29041994 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29041932 GGCTCAAACT
29041942 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29041968 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29041994 C
1 C
29041995 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29042332 original size:158 final size:159
Alignment explanation
Indices: 29041967--29042342 Score: 420
Period size: 160 Copynumber: 2.4 Consensus size: 159
29041957 AACTCCGTAT
* *
29041967 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAA
* *
29042032 CCGGCCGGAGTGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCTACTCTACGTGCTATCGGTC
66 CCGGCCGGAGTGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCC-ACCCTACGTGCTATCGATC
* ***
29042097 CTGTTGCCACAACCCCTCGGTCCAGCTGGG
130 CTGCTGCCACAACCCCTCGGTCCAGCTCAA
** ** * * * *
29042127 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAA
* * * * * *
29042192 CCGGCCGGA-TAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTTCC-CCCTGCGTGCTATCGAT
66 CCGGCCGGAGT-GGCAGAATGCGCAAGCCGAGGATCGG-CTCGATCCACCCTACGTGCTATCGAT
* * * *
29042255 CCTGCTGTCGCAA-CCCTCGGT-CTGATCCAA
129 CCTGCTGCCACAACCCCTCGGTCCAGCT-CAA
* *
29042285 TCTTAGA-ATGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGG
29042343 TGCTGAGCCG
Statistics
Matches: 178, Mismatches: 34, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 5 0.03
158 55 0.31
159 25 0.14
160 87 0.49
161 6 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAA
CCGGCCGGAGTGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCACCCTACGTGCTATCGATCC
TGCTGCCACAACCCCTCGGTCCAGCTCAA
Found at i:29042352 original size:158 final size:158
Alignment explanation
Indices: 29041967--29042421 Score: 443
Period size: 158 Copynumber: 2.9 Consensus size: 158
29041957 AACTCCGTAT
* *
29041967 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * *
29042032 CCGGCCGGAGT-GGCAGAATGCGCAAGCCGAGGATCGG-CTCGATCCTACTCTACGTGCTATCGG
66 CCGGCCGGA-TAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTCC--CCCTGCGTGCTATCGA
* ***
29042095 TCCTGTTGCCACAACCCCTCGGTCCAGCTGGG
127 TCCTGCTGCCACAACCCCTCGGTCCAGCTCAA
** ** * * * *
29042127 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* *
29042192 CCGGCCGGATAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTTCCCCCTGCGTGCTATCGATCC
66 CCGGCCGGATAGGCAGAATGCGCAAGCCGGGGATCGGCCTGG-TCCCCCTGCGTGCTATCGATCC
* * * *
29042257 TGCTGTCGCAA-CCCTCGGT-CTGATCCAA
130 TGCTGCCACAACCCCTCGGTCCAGCT-CAA
* * * *
29042285 TCTTAGA-ATGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
** * * * * * * *
29042349 GCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTCTGCGTGTTACCGAT
65 GCCGGCCGGATAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCC--CTGCGTGCTATCGAT
*
29042414 CCTACTGC
128 CCTGCTGC
29042422 TGGTCCTACT
Statistics
Matches: 239, Mismatches: 49, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 10 0.04
158 92 0.38
159 44 0.18
160 88 0.37
161 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
CCGGCCGGATAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTGCGTGCTATCGATCCT
GCTGCCACAACCCCTCGGTCCAGCTCAA
Found at i:29042784 original size:354 final size:354
Alignment explanation
Indices: 29042127--29043121 Score: 1058
Period size: 354 Copynumber: 2.8 Consensus size: 354
29042117 TCCAGCTGGG
* * * *
29042127 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * * * * * *
29042192 CCGGCCGGATAGGCAGAATGTGCAAG-TCGGGGATCGGCCTGGTTCCCCCTGCGTGCTATCGATC
66 CCAGTCGGAGAGGCAGAATGTGCAAGCT-GAGGATCGGCCCGG-TCCCCCTGCGTACTATCAAAC
* * *
29042256 CTGCTGTCGCAACCCTCGGTCTGATCCAATCTTAGAATGGGAATGAACTCTGTATGCCTAAGTCA
129 CTGCTGCCGCAACCCTCGGTCTGATCCAACCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCA
** * *
29042321 ACCCATGAAACGAGTGTGCGGGTGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCG
194 ACCCATGAAACGAGCATGCGGGTGCTGAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCG
* * * *
29042386 ACCCGGTCCCCTTCTGCGTGTTACCGATCCTACTGCTGGTCCTACTACCGCAATCC-TTGGTCTG
259 ACCCGGTCCCCTCCTGCGTGCTACCGATCCTACTGCTCGTCCTACCACCGCAA-CCTTTGGTCTG
29042450 GTCCGATCTTACACTGGGAATGAACTCAGTAT
323 GTCCGATCTTACACTGGGAATGAACTCAGTAT
* * *
29042482 GCTTAGACATGGAATGAACTCTGTATGTCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * * *
29042547 TCAATCGGAGAGGCAGAATATGCAAGCTGAGGAACGGCCCGGTCCCTCTGCGTACTATCAAACCT
66 CCAGTCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCTGCGTACTATCAAACCT
29042612 GCTGCCGCAACCCTCGGTCCTG-TCCAACCTTAGACAT-GGAATGAACT-TCGTATGCCTAAAGC
131 GCTGCCGCAACCCTCGGT-CTGATCCAACCTTAGA-ATGGGAATGAACTCT-GTATGCCT-AAGC
** * * * * * *
29042674 CAACCTTGTGAAACGAGCATGCGGGTGCTTAGTCGGCCGGAGAGGCAAAATGCGTAAGTC-GGGA
192 CAACC-CATGAAACGAGCATGCGGGTGCTGAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGGA
* * ** * **
29042738 TTGACCTGGTCCCC-CCTGCGTGCTGTCGATCCTGCTGCTCGTCCTACCGTCGCAACCTTTGGTC
256 TCGACCCGGTCCCCTCCTGCGTGCTACCGATCCTACTGCTCGTCCTACCACCGCAACCTTTGGTC
** *
29042802 TGGTCCGATCTTAGGCTGGGAATGAACTCCGTAT
321 TGGTCCGATCTTACACTGGGAATGAACTCAGTAT
*
29042836 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
* * * * * *
29042901 CCTGTCGGAGAGGCAGAGTGTGCAAGCT-AGGGATCGACCCGGTCCCCTCTAGCATGCTGT-AGA
66 CCAGTCGGAGAGGCAGAATGTGCAAGCTGA-GGATCGGCCCGGTCCCC-CT-GCGTACTATCA-A
*** * * * * ** * *
29042964 TTTTGCTGCCGTAACCCTCGGCCCGGTCTGATCTTA-AACTGGGATTGAACTCTGTATGCCTAAG
127 ACCTGCTGCCGCAACCCTCGGTCTGATCCAACCTTAGAA-TGGGAATGAACTCTGTATGCCTAAG
* * ** * * * * * * * *
29043028 TCAATCCATGAAACGAGTGTACGGGAGCTGAGCCGGCCGGAGAGTCATAATGTGCAAGCCGAGGA
191 CCAACCCATGAAACGAGCATGCGGGTGCTGAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGGA
* *
29043093 TCGACCTGGTCCCC-CTCTACGTGCTACCG
256 TCGACCCGGTCCCCTC-CTGCGTGCTACCG
29043122 GTCTCGCAGC
Statistics
Matches: 529, Mismatches: 94, Indels: 33
0.81 0.14 0.05
Matches are distributed among these distances:
353 4 0.01
354 274 0.52
355 149 0.28
356 101 0.19
357 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (354 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
CCAGTCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCTGCGTACTATCAAACCT
GCTGCCGCAACCCTCGGTCTGATCCAACCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAAC
CCATGAAACGAGCATGCGGGTGCTGAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGAC
CCGGTCCCCTCCTGCGTGCTACCGATCCTACTGCTCGTCCTACCACCGCAACCTTTGGTCTGGTC
CGATCTTACACTGGGAATGAACTCAGTAT
Found at i:29043246 original size:159 final size:159
Alignment explanation
Indices: 29042836--29043282 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 159
29042826 AACTCCGTAT
29042836 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * **
29042901 CCTGTCGGAGAGGCAGAGTGTGCAAGCTAGGGATCGACCCGGT-CCCCTCTAGCATGCTGTAGAT
66 CCGGCCGGAGAGGTAGAATGTGCAAGCCAAGGATCGACCTGGTCCCCCTCTA-CGTGCTACAGAT
* * * **
29042965 TTTGCTGCCGTAACCCTCGGCCCGGTCTGA
130 CTCGCAGCCACAACCCTCGGCCCGGTCTGA
* * * * * * * * * * *
29042995 TCTTAAAC-TGGGATTGAACTCTGTATGCCTAAGTCAATCCATGAAACGAGTGTACGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
29043059 GCCGGCCGGAGA-GTCATAATGTGCAAGCCGAGGATCGACCTGGTCCCCCTCTACGTGCTACCGG
65 GCCGGCCGGAGAGGT-AGAATGTGCAAGCCAAGGATCGACCTGGTCCCCCTCTACGTGCTACAGA
* *
29043123 TCTCGCAGCCACAACCCTCGGTCCGG-CTTGG
129 TCTCGCAGCCACAACCCTCGGCCCGGTC-TGA
* * * *
29043154 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
29043219 TCGGCCGGAGAGGTAGAATGCGCAAGCCAATGATCG-GCTCGGTCCCCC-CTACGTGCTGCAGAT
66 CCGGCCGGAGAGGTAGAATGTGCAAGCCAAGGATCGACCT-GGTCCCCCTCTACGTGCTACAGAT
29043282 C
130 C
29043283 CTGCTATCGC
Statistics
Matches: 225, Mismatches: 56, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
158 18 0.08
159 196 0.87
160 11 0.05
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGTAGAATGTGCAAGCCAAGGATCGACCTGGTCCCCCTCTACGTGCTACAGATC
TCGCAGCCACAACCCTCGGCCCGGTCTGA
Found at i:29043342 original size:26 final size:26
Alignment explanation
Indices: 29043313--29043365 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29043303 CTGGTCCGAT
29043313 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTAAGG-ATGAACTCCGTATG
29043339 CTTAGACTAAGGATGAACTCCGTATG
1 CTTAGACTAAGGATGAACTCCGTATG
29043365 C
1 C
29043366 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGGATGAACTCCGTATG
Found at i:29043694 original size:171 final size:169
Alignment explanation
Indices: 29043338--29043705 Score: 413
Period size: 169 Copynumber: 2.2 Consensus size: 169
29043328 AACTCCGTAT
* * *
29043338 GCTTAGACTAAGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * ** *
29043402 GTCGACCGGAGTGGCAGAATGTGCAAGCCGGGATCAGCCCGGCCCACCCTGCGTGCTGTTGATCC
65 GCCGACCGCAAAGGCAGAATGTGCAAGCCGGGATCAGCCCGGCCCACCCTGCGTGCTGTCGATCC
* * * * * *
29043467 CGCTGCTGGTCCTGCTGCCACAACCCTCGGTTCGGCTGGG
130 CGCTGCTAGTCCTGCTACCACAACCCTCGATGCGGCTCGA
* **
29043507 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * **
29043572 CCGACCGCAAAGGTAGAATGCT-CAAGTCGGGGATTGGCCCGGTCCC-CCCTTGCGTGCTGTCGA
66 CCGACCGCAAAGGCAGAATG-TGCAAG-CCGGGATCAGCCCGG-CCCACCC-TGCGTGCTGTCGA
* *
29043635 TCCTGCTGCTAGTCCTGCTACCGCAACCCTCGATGCGG-TCCGA
127 TCCCGCTGCTAGTCCTGCTACCACAACCCTCGATGCGGCT-CGA
* *
29043678 TCTTAGAC-TGGGAATGAACCCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29043706 TTAAACATGG
Statistics
Matches: 167, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
168 3 0.02
169 74 0.44
170 18 0.11
171 72 0.43
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.20
Consensus pattern (169 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCGACCGCAAAGGCAGAATGTGCAAGCCGGGATCAGCCCGGCCCACCCTGCGTGCTGTCGATCCC
GCTGCTAGTCCTGCTACCACAACCCTCGATGCGGCTCGA
Found at i:29044318 original size:159 final size:158
Alignment explanation
Indices: 29044003--29044292 Score: 350
Period size: 159 Copynumber: 1.8 Consensus size: 158
29043993 CTGCTACTGG
* * *
29044003 TCCTGCTGTCGCAACCTTGCTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTCTGCCTATGGC
1 TCCTGCTGTCGCAACCTCGCTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGC
** * ** * *
29044068 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCAACCAGAAAGGCAGAATGAGCAAGCCGGGTATC
66 AACCCACAAAACGAGCGTGCAGGCACTCAGCCAACCAGAAAGCCAGAATGAGCAAGCCGGGGATC
29044133 GACCCAGTCCCCACCTACGTGCTGTCGA
131 GACCCAGTCCCCACCTACGTGCTGTCGA
* * * *
29044161 TCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACT-TCGTATGCCTAAG
1 TCCTGCTGTCGCAA-CCTCGCTCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAG
* * * ** * *
29044225 TCAACCCACAAAACGAGCGTTCAGGCACTGAGCCGGCC-GAAGAGCCATAATGCGCAAGCCGGGG
64 GCAACCCACAAAACGAGCGTGCAGGCACTCAGCCAACCAGAA-AGCCAGAATGAGCAAGCCGGGG
29044289 ATCG
128 ATCG
29044293 GCCTGGTCCC
Statistics
Matches: 108, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
158 17 0.16
159 91 0.84
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TCCTGCTGTCGCAACCTCGCTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGC
AACCCACAAAACGAGCGTGCAGGCACTCAGCCAACCAGAAAGCCAGAATGAGCAAGCCGGGGATC
GACCCAGTCCCCACCTACGTGCTGTCGA
Found at i:29045506 original size:26 final size:26
Alignment explanation
Indices: 29045477--29045529 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29045467 CTGATCTGAT
*
29045477 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29045503 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29045529 C
1 C
29045530 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29045702 original size:26 final size:26
Alignment explanation
Indices: 29045673--29045725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29045663 CCGGTCTGAT
29045673 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
29045699 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
29045725 C
1 C
29045726 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:29045810 original size:196 final size:197
Alignment explanation
Indices: 29045453--29045827 Score: 477
Period size: 196 Copynumber: 1.9 Consensus size: 197
29045443 GATCCTTCTG
* * * * *
29045453 CCGCAACCCTCGTTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATG
1 CCGCAACCCTCGGTCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * **
29045518 AACTCCGTATGCCTAAGTCAACCCGCGAAAGGAGTGTGCAAGCGCTCAACCGGTCAGAGAGGCAG
66 AACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCAAGCGCTCAACCGACCAGAGAGGCAG
* * * * *
29045583 AATGTGCAAGCTAGGGATCGACCCGGT-CCCCCCTGCGTGCTGTCGATCTAGCTACTGGTATTGC
131 AATGCGCAAGCGAGGAACCGACCCAGTCCCCCCCTGCGTGCTGTCGATCTAGCTACTGGTATTGC
29045647 TA
196 TA
* *
29045649 CCGCAACCCTTGGTCCGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACAT-GGAAT
1 CCGCAACCCTCGGTCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCTTAGAC-TGGGAAT
** * *
29045713 GAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA
65 GAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCAAGCGCTCAACCGACCAGAGAGGCA
* * *
29045778 GAATGCGTAAGCCGA-GAACCGGCCCAGTCCCCCCCTGTGTGCTGTCGATC
130 GAATGCGCAAG-CGAGGAACCGACCCAGTCCCCCCCTGCGTGCTGTCGATC
29045828 CTACTACCGC
Statistics
Matches: 150, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
196 127 0.85
197 23 0.15
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (197 bp):
CCGCAACCCTCGGTCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCAAGCGCTCAACCGACCAGAGAGGCAG
AATGCGCAAGCGAGGAACCGACCCAGTCCCCCCCTGCGTGCTGTCGATCTAGCTACTGGTATTGC
TA
Found at i:29046114 original size:159 final size:158
Alignment explanation
Indices: 29045698--29046201 Score: 480
Period size: 159 Copynumber: 3.2 Consensus size: 158
29045688 AACTCCGTAT
29045698 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
29045763 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGAACCGGCCCAGTCCCCCCCTGTGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCAG-GGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATC
** *
29045828 CTACTACCGCAACCCTCGGTTTGGTCCAA
130 CTACTACCGCAACCCTCGGTCAGCTCCAA
* * * * * *
29045857 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGTGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCA
* * *
29045921 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAG-CAGGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGAT
* * * ***
29045986 -CTCGCTGCCGCAACCCTTGGTCCAGCT-GGG
129 CCT-ACTACCGCAACCCTCGGT-CAGCTCCAA
* * * *
29046016 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** * *
29046081 TCGGCCGGTGAGGTAGAATGCGCAAGTCAGGGATC-AGCCCGAT-CCCCCATGCATGCTATTGAT
66 CCGACCGGAGAGGCAGAATGCGCAAG-CAGGGATCGA-CCCGGTCCCCCCCTGTGTGCTGTCGAT
* * * * * **
29046144 CCTGCTGCCGCAACCCTCGATCCGGTCTGA
129 CCTACTACCGCAACCCTCGGTCAGCTCCAA
*
29046174 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29046202 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 55, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
157 4 0.01
158 58 0.21
159 214 0.76
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCAGGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATCC
TACTACCGCAACCCTCGGTCAGCTCCAA
Found at i:29046204 original size:26 final size:26
Alignment explanation
Indices: 29046175--29046227 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29046165 CCGGTCTGAT
29046175 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
29046201 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29046227 C
1 C
29046228 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29047212 original size:185 final size:185
Alignment explanation
Indices: 29046881--29047278 Score: 453
Period size: 185 Copynumber: 2.2 Consensus size: 185
29046871 GTGGCTCAAA
* **
29046881 ATCTTAGACTAGGAATGAACTCCATATGGTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTTGGAATGAACTCCATATGGTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * * * *
29046946 CCACGAAACGAGCGTGCGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGC
66 CCACAAAACGAGCATACGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCTAGGGACCAAC
* *
29047011 CCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCT-G
131 CCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGGT-TGG
** * *
29047066 ATCTTAGACTTGGAATGAACTCTGTA-GGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCA
1 ATCTTAGACTTGGAATGAACTCCATATGG-TTAGACAT-GGAATGAACTCCATATGCCTAAGCCA
* * * * * * *
29047129 ACCTACAAAACGAGCATACGGGCGCTGAACTGGTCGAAGAGGCATAGTGCGCAAGAC-AGGGACC
64 ACCCACAAAACGAGCATACGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCAAG-CTAGGGACC
* * *
29047193 AACCCGATCCCCTTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGTTGG
128 AACCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGGTTGG
** * *
29047251 GGCTTAGACATGGAATGAACTCCCTATG
1 ATCTTAGACTTGGAATGAACTCCATATG
29047279 CCTAAGCCAA
Statistics
Matches: 176, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
184 4 0.02
185 170 0.97
186 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (185 bp):
ATCTTAGACTTGGAATGAACTCCATATGGTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCACAAAACGAGCATACGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCTAGGGACCAAC
CCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGGTTGG
Found at i:29047416 original size:158 final size:158
Alignment explanation
Indices: 29047207--29047512 Score: 454
Period size: 158 Copynumber: 1.9 Consensus size: 158
29047197 CGATCCCCTT
* * *
29047207 CTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACT
1 CTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACT
* * * * * *
29047272 CCCTATGCCTAAGCCAACCCATGAAACGAGCACG-TGGGCACTCAGCTGGCCGGAGAGGTAGAAT
66 CCCTATGCCTAAGCCAA-CCACGAAACGAGCACGCAGGGCACTCAACCGACCGGAGAGGCAGAAT
29047336 GCACAAGCC-AGAGATCGGCTCGGACCCCC
130 GCACAAGCCAAG-GATCGGCTCGGACCCCC
*
29047365 CTGCGTGTTGTCGATCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACT
1 CTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACT
* * *
29047430 CCCTATGCCTAAGCCAACCACGAAACGGGCATGCAGGGCACTCAACCGACCGGAGAGGCAGGATG
66 CCCTATGCCTAAGCCAACCACGAAACGAGCACGCAGGGCACTCAACCGACCGGAGAGGCAGAATG
*
29047495 CGCAAGCCAAGGATCGGC
131 CACAAGCCAAGGATCGGC
29047513 CCAGTCCCCC
Statistics
Matches: 132, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
157 13 0.10
158 117 0.89
159 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.16
Consensus pattern (158 bp):
CTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCACGAAACGAGCACGCAGGGCACTCAACCGACCGGAGAGGCAGAATG
CACAAGCCAAGGATCGGCTCGGACCCCC
Found at i:29047599 original size:26 final size:26
Alignment explanation
Indices: 29047570--29047622 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29047560 CTGGTCCGAT
29047570 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29047596 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29047622 C
1 C
29047623 CTAACTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29047978 original size:26 final size:26
Alignment explanation
Indices: 29047949--29048002 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
29047939 TCCAATCCGA
29047949 GCTTAGACTAT-GAATGAACTCCGTAT
1 GCTTAGAC-ATGGAATGAACTCCGTAT
*
29047975 GCTTAGACATGGAATGAACTCTGTAT
1 GCTTAGACATGGAATGAACTCCGTAT
29048001 GC
1 GC
29048003 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACTCCGTAT
Found at i:29048273 original size:159 final size:158
Alignment explanation
Indices: 29047976--29048478 Score: 502
Period size: 159 Copynumber: 3.2 Consensus size: 158
29047966 ACTCCGTATG
* *
29047976 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCT-AGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * * * **
29048041 CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGAT-CCCCTCTTGCGTGTTGTCGATC
65 CGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCTGCTCGGTCCCCCT-TTGCGTGCTACCGATC
* *
29048105 CTGCGGCCACAACCCTCGGTTCGATCCAAT
129 CTGCTGCCACAACCCTCGGTCCGATCCAAT
* * *
29048135 CTTAGACTAT-GAATGAACTCCGTATGCCTGAGTCAACGCACGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGAC-ATGGAATGAACTCCGTATGCCT-AGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * *
29048199 CCGACCGGAGAGGCATAATGCAAAAGCCGGGGATCTGCCCGGTCCCCCTTTGCATGCTACCGGT-
64 CCGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCTGCTCGGTCCCCCTTTGCGTGCTACCGATC
* * **
29048263 CTCGCTGCCACAACCCTCGGTCCG-GCTAGGG
129 CT-GCTGCCACAACCCTCGGTCCGATCCA-AT
* * * * *
29048294 CTTAGACATGGAATGAACTCCCTATGCCTACGCCAACCCACGAAATGGGCATACGGGCGCTCG-G
1 CTTAGACATGGAATGAACTCCGTATGCCTA-GCCAACCCACGAAACGAGCGTGCGGGCGCT-GAG
* * * *
29048358 CCGATCGGAGAGGCAGAATGCGTAAGCTGGGGAT-TGGCTCAGTCCCTCC--TGCGTGCTACCAA
64 CCGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCT-GCTCGGTCCC-CCTTTGCGTGCTACCGA
* * * *
29048420 TCCTACTGCCGCAACCCTCAGTCCGATCCGAT
127 TCCTGCTGCCACAACCCTCGGTCCGATCCAAT
29048452 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29048479 TTAGACTAGG
Statistics
Matches: 279, Mismatches: 53, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 61 0.22
159 207 0.74
160 10 0.04
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
GATCGGAGAGGCAGAATGCGAAAGCCGGGGATCTGCTCGGTCCCCCTTTGCGTGCTACCGATCCT
GCTGCCACAACCCTCGGTCCGATCCAAT
Found at i:29048481 original size:26 final size:26
Alignment explanation
Indices: 29048452--29048504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29048442 CCGATCCGAT
29048452 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
29048478 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29048504 C
1 C
29048505 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29051096 original size:26 final size:26
Alignment explanation
Indices: 29051056--29051107 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29051046 NNNNNNNNNN
*
29051056 TTAGACTGAGAATGAACTCTGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
* *
29051082 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
29051108 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:29051410 original size:197 final size:197
Alignment explanation
Indices: 29051056--29051411 Score: 439
Period size: 197 Copynumber: 1.8 Consensus size: 197
29051046 NNNNNNNNNN
** * * * *
29051056 TTAGACTGAGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCG
1 TTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACA
* * * * ** * *
29051121 TGAAAGGAGTGTGCAGGCGCTCAACTGATCGAAGAGGCAAAATGCGTAAGTCGGGGATCGATCGA
66 CGAAACGAGCGTGCAGGCGCTCAACCGATCGAAGAGGCAAAATGCACAAGTCAGGGACCGATCGA
*
29051186 GTCCCTCCCTACGTGCTGTCAATCCTGCTGTTGGTCCTGCTACCGCAAACCTCAGTTCGGTTCGA
131 GTCCCACCCTACGTGCTGTCAATCCTGCTGTTGGTCCTGCTACCGCAAACCTCAGTTCGGTTCGA
29051251 TC
196 TC
* * *
29051253 TTAGATTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAATAC
1 TTAGACTGAGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACAC
* * * * *
29051317 ACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAG-CTAGGGACCGACT
65 ACGAAACGAGCGTGCAGGCGCTCAACCGATCGAAGAGGCAAAATGCACAAGTC-AGGGACCGA-T
* *
29051381 CG-GTCCCACCCTACGTTCTGTCGATCCTGCT
128 CGAGTCCCACCCTACGTGCTGTCAATCCTGCT
29051412 ACTGCAACCC
Statistics
Matches: 131, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
196 1 0.01
197 126 0.96
198 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (197 bp):
TTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACA
CGAAACGAGCGTGCAGGCGCTCAACCGATCGAAGAGGCAAAATGCACAAGTCAGGGACCGATCGA
GTCCCACCCTACGTGCTGTCAATCCTGCTGTTGGTCCTGCTACCGCAAACCTCAGTTCGGTTCGA
TC
Found at i:29052816 original size:158 final size:159
Alignment explanation
Indices: 29052479--29052822 Score: 367
Period size: 158 Copynumber: 2.2 Consensus size: 159
29052469 AACTCTGTAT
* * **
29052479 GCTTAGACATGGAATGAACTCCATACGCCTAAGTCAACCCATGAAACGAGCGAGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGAGCGAGCCCTCAG
* *
29052544 CCTGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTATGTGCTGTCGGTC
66 CCTGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTATGTGCTGCCGATC
* * ***
29052609 CTACTGCCACAACCCTCGGTCTGGCTGGG
131 CTACTGCCACAACCCTCAGTCTGACTCAA
* * * *
29052638 GCTTAGACATGGAATG-ACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCG-GACCCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGAGCGAG-CCCTCA
* * * *
29052701 G-CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC-C-AGTGTGTTGCCG
65 GCCT-GCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTA-TGTGCTGCCG
** ** * *
29052763 ATCCTGTTGCTGCAACCTTCAGTCTGATTCAA
128 ATCCTACTGCCACAACCCTCAGTCTGACTCAA
* *
29052795 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
29052823 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 45 0.29
158 90 0.59
159 16 0.10
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGAGCGAGCCCTCAG
CCTGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTATGTGCTGCCGATC
CTACTGCCACAACCCTCAGTCTGACTCAA
Found at i:29052832 original size:26 final size:26
Alignment explanation
Indices: 29052796--29052848 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29052786 CTGATTCAAT
29052796 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29052822 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29052848 C
1 C
29052849 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29052905 original size:13 final size:13
Alignment explanation
Indices: 29052887--29052912 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29052877 GGTGCTCAGT
29052887 CGATCGGAGAGGC
1 CGATCGGAGAGGC
29052900 CGATCGGAGAGGC
1 CGATCGGAGAGGC
29052913 AAAATGCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:29054209 original size:26 final size:26
Alignment explanation
Indices: 29054173--29054225 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29054163 CTAGTTCGAT
*
29054173 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29054199 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29054225 C
1 C
29054226 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29054500 original size:355 final size:349
Alignment explanation
Indices: 29053856--29054664 Score: 909
Period size: 355 Copynumber: 2.3 Consensus size: 349
29053846 CCGGTCCGAT
* * * *
29053856 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
29053921 CAACCGAAGAGGTATAATGCGCAAGCCAGGGATCAGTCCGGTTCCCCTCTGCGTGCTGTCGGTCC
66 CGACCGGAGAGGCATAATGCGTAAGCCAGGGATCAGTCCGATCCCCCTCTGCGTGCTGTCGGTCC
*
29053986 TGCTGCCACAACCCTCGATCCGGTTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCCGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
29054051 CCCACAAAACGGGCATCCGGGCACTCAACCTATCAGAGAGGCAGAATGCGCAAGTCGGGGATCGA
196 CCCACAAAACGAGCATCCGAGCACTCAACCGATCAGAGAGGCAGAATACGCAAGTCAGGGATCGA
* *
29054116 CCCGGTCCCCCCAACGTGCTATCGATCCTG-T-T-G-C-T-GCAACCCTCGGTCTAG-TTCGATC
261 CCCGGTCCCCCCAACGTGCTATCGATCCTGCTCTAGCCTTCGCAACCCTCAGTC-AGATCCGATC
*
29054174 TTAGACTGGGAATGAACTCTGTATG
325 TTAGACTGGGAATGAACTCTATATG
*
29054199 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
29054264 CGATCGGAGAGGCATAATGTGTAAGCCGGGGATCAG-CTCGATCCCCCTTTGCGTGCTGTCGATC
66 CGACCGGAGAGGCATAATGCGTAAGCCAGGGATCAGTC-CGATCCCCC--T-C-TGC-GT-G--C
* * * *
29054328 TTGCTACCGGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGT
122 -TG-T--CGGTCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTACACATGGAATGAACTCCCT
** ** * * *
29054393 ATGCCTAAGCCAACCCACAAAACGAGTGTGTGAG-ATCTCAGCCGATCGGAGAGGCAGATTACGC
183 ATGCCTAAGCCAACCCACAAAACGAGCATCCGAGCA-CTCAACCGATCAGAGAGGCAGAATACGC
* * ** * * *
29054457 AAGTCAGGGATCGGCCCGGTTCCCCCTGCGTGTTGTTGATCCTGCTGCTAGTCCTGTTGCCGCAA
247 AAGTCAGGGATCGACCCGGTCCCCCCAACGTGCTATCGATCCTGCT-CTAG-CC--TT--CGCAA
* *
29054522 CCCTCAGTCCGATCCGATCTTAGATTGGGAATGAACTCTATATG
306 CCCTCAGTCAGATCCGATCTTAGACTGGGAATGAACTCTATATG
* *
29054566 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
29054630 CCGACCGGAGAGACAAAATGCGTAAGTTAGGGATC
65 CCGACCGGAGAGGCATAATGCGTAAGCCAGGGATC
29054665 GGCCCGAACA
Statistics
Matches: 385, Mismatches: 53, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
342 1 0.00
343 96 0.25
345 1 0.00
346 1 0.00
347 3 0.01
348 2 0.01
349 1 0.00
351 1 0.00
352 2 0.01
353 1 0.00
354 1 0.00
355 140 0.36
356 1 0.00
358 1 0.00
359 1 0.00
361 1 0.00
364 1 0.00
366 1 0.00
367 128 0.33
368 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (349 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCATAATGCGTAAGCCAGGGATCAGTCCGATCCCCCTCTGCGTGCTGTCGGTCC
TGCTGCCACAACCCTCGATCCGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACGAGCATCCGAGCACTCAACCGATCAGAGAGGCAGAATACGCAAGTCAGGGATCGA
CCCGGTCCCCCCAACGTGCTATCGATCCTGCTCTAGCCTTCGCAACCCTCAGTCAGATCCGATCT
TAGACTGGGAATGAACTCTATATG
Found at i:29055001 original size:157 final size:154
Alignment explanation
Indices: 29054565--29055065 Score: 466
Period size: 157 Copynumber: 3.2 Consensus size: 154
29054555 AACTCTATAT
*
29054565 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** * * *
29054630 CCGACCGGAGAGACAAAATGCGTAAGTTAGGGATCGGCCC-GAACACCCTACGTGTTGTCGATCC
65 CCGACCGGAGAGACAAAATGCGCAAG-TCGGGATC-GCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
29054694 TGCTGTCGTAACCCTCGATCCGATCCGA
128 TACTGCCGTAACCCTCGATCCG-TCTGA
* * * * * * *
29054722 TCTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCTTGCGGGCGCTAAG
1 GCTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
29054787 TCGGCCGGAGAGCCATAATACGCAAGTCGGGGATCGCCCGGTCCTCCTCTGCATGCTGTCGGTCC
65 CCGACCGGAGAGACAAAATGCGCAAGTC-GGGATCGCCCGGTCC-CCCCTGCGTGCTGTCGATCC
* ** *
29054852 CACTGCCACAACCCTC-AGTCCGTCTGG
128 TACTGCCGTAACCCTCGA-TCCGTCTGA
* * *
29054879 GCTTAGACATGGAATGAACTCCCTATGCCTATGTCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * * * *
29054944 CCGCCCGGAGAGGTAGAATGCGCAAGCCGGAGATCAGCCCGGTCCCCCCTGTGTGCTGCCGATCC
65 CCGACCGGAGAGACAAAATGCGCAAGTCGG-GATC-GCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
29055009 TACTACCGTAACCCTCGGTTCCGGTCTGA
128 TACTGCCGTAACCCTC-GATCC-GTCTGA
* *
29055038 TCTTAGACTAGGAATGAACTCCATATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
29055066 TCAGACTGGG
Statistics
Matches: 272, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
156 10 0.04
157 188 0.69
158 45 0.17
159 29 0.11
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (154 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGACAAAATGCGCAAGTCGGGATCGCCCGGTCCCCCCTGCGTGCTGTCGATCCTAC
TGCCGTAACCCTCGATCCGTCTGA
Found at i:29055794 original size:26 final size:26
Alignment explanation
Indices: 29055756--29055834 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
29055746 GGCTCAAAAT
29055756 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29055782 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29055808 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29055834 C
1 C
29055835 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29056103 original size:159 final size:159
Alignment explanation
Indices: 29055808--29056310 Score: 387
Period size: 159 Copynumber: 3.2 Consensus size: 159
29055798 ACTCCGTATG
* * * * *
29055808 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAATAAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCAACAAAATAAGAGTGCGGGCGCTCAGA
* * * * *
29055873 CAGTCGAAGAGGTAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCCTACGTGCTGTCGATCC
66 CAGCCGAAGAGGCAGAATGCACAAGCCGAGGATAGACCCGGTCCCCCCCTACGTGCTGTCGATCC
*
29055938 TGCTGCCGTAACCCTCAGTTTGATTTGAT
131 TACTGCCGTAACCCTCAGTTTGATTTGAT
* * * *
29055967 CTTAGAC-TGGGAATGAACTCCGTATGCATTAGTCAACCCACAAAATGAA-AGTGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCAACAAAAT-AAGAGTGCGGGCGCTCA
* * * * *
29056030 GACAGCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
64 GACAGCCGAAGAGGCAGAATGCACAAGCCGAGGATAGACCCGGTCCCCCCCTACGTGCTGTC-GA
** * * * * **
29056095 TCC-ACTGCCACAACCCTTA-ATTCAGTTGGGG
128 TCCTACTGCCGTAACCCTCAGTTTGA-TTTGAT
* * * * * *** *
29056126 CTTAGACACGGAATGAGCTCCCTATGCCTAAGCTAA-C-ACATGAAACGGGCGTGCGGGCGCTCA
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCAACA--AAATAAGAGTGCGGGCGCTCA
* * * * * * *
29056189 GTCGGCC-AGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGAT-CCCCCCTGCGTGCTGTCGA
64 GACAGCCGA-AGAGGCAGAATGCACAAGCCGAGGATAGACCCGGTCCCCCCCTACGTGCTGTCGA
* * * * * ** *
29056252 TCCTGCTGCCGCAACCTTCGGTCT-AGCCTGAC
128 TCCTACTGCCGTAACCCTCAGTTTGA-TTTGAT
29056284 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29056311 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 7 0.03
158 59 0.22
159 197 0.73
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCAACAAAATAAGAGTGCGGGCGCTCAGA
CAGCCGAAGAGGCAGAATGCACAAGCCGAGGATAGACCCGGTCCCCCCCTACGTGCTGTCGATCC
TACTGCCGTAACCCTCAGTTTGATTTGAT
Found at i:29056336 original size:26 final size:26
Alignment explanation
Indices: 29056284--29056336 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29056274 CTAGCCTGAC
*
29056284 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
29056310 CTTAGACTGGGGATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
29056336 C
1 C
29056337 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:29057186 original size:26 final size:26
Alignment explanation
Indices: 29057148--29057200 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29057138 GGCTCAAAAT
*
29057148 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29057174 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29057200 C
1 C
29057201 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29057471 original size:159 final size:157
Alignment explanation
Indices: 29057174--29057907 Score: 552
Period size: 158 Copynumber: 4.6 Consensus size: 157
29057164 ACTCCGTATG
* * *
29057174 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCAG-ACGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGC-GTGCGGGCGCTCAG
* *
29057238 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTAGCGTGCTGTTGATC
65 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCT-GCGTGCTG-CGATC
29057303 CTGCTGCCACAACCCTCAGTCCGGTCTGAT
128 CTGCTGCCACAACCCTCAGTCCGGTCTGAT
* * * * * *
29057333 CTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGCGCGTGCGGGTGCTTAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
29057397 CC-AGCCGAAGAGGCATAATGCGTAAGCCGGGGACCAACCCGGTCCCCCTCTGCGTGCTGCCAGT
65 CCGA-CCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCC-CTGCGTGCTGCGA-T
* * * * * * **
29057461 CCCGCAGCCACAACCATCA-TTCTGACTGGGG
127 CCTGCTGCCACAACCCTCAGTCCGGTCT-GAT
* * * * * *
29057492 CTTAAACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAATGGGCGTGCGTGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
29057556 CGATCGGAGAGGCAGAATACGCAAGTCGGGGATCAGCCCTA-TCCCCCCTGTGTGCTGTCGATCC
66 CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCC-AGTCCCCCCTGCGTGCTG-CGATCC
* * *
29057620 TGCTGTCGCAACCCTCAGTCCGATCTGAT
129 TGCTGCCACAACCCTCAGTCCGGTCTGAT
* ** ** * * *
29057649 CTTAG-CCTGTGAATGAACTCCGTATGCCTAAATCAACCCATGAAACAAGTGTGCGGGCACTCAA
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * ** *
29057713 CC-AGTCGGAGAGGCATAATGTGCAAGCTAGGGATCAGCCCAATCCCCCTCTGTGTGCTATCGAT
65 CCGA-CCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCC-C----TG----CG-T
* ** **
29057777 CCCGCTGTCGATCCTGCTACCACAACCCTTGGTCCGGT-TAGGG
119 ---GCTG-CGATCCTGCTGCCACAACCCTCAGTCCGGTCT-GAT
* * * *
29057820 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
** *
29057885 C-AGCCAAAGAGGCAGAATGCGCA
66 CGA-CCGGAGAGGCAAAATGCGCA
29057908 GCCAGCCAAA
Statistics
Matches: 443, Mismatches: 102, Indels: 48
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 40 0.09
158 158 0.36
159 134 0.30
160 3 0.01
163 2 0.00
167 1 0.00
168 1 0.00
170 1 0.00
171 97 0.22
172 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCGATCCTG
CTGCCACAACCCTCAGTCCGGTCTGAT
Found at i:29057915 original size:25 final size:25
Alignment explanation
Indices: 29057881--29057929 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
29057871 TACAGGTGCT
29057881 CAGCCAGCCAAAGAGGCAGAATGCG
1 CAGCCAGCCAAAGAGGCAGAATGCG
29057906 CAGCCAGCCAAAGAGGCAGAATGC
1 CAGCCAGCCAAAGAGGCAGAATGC
29057930 ACAAGCTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.29, G:0.31, T:0.04
Consensus pattern (25 bp):
CAGCCAGCCAAAGAGGCAGAATGCG
Found at i:29057979 original size:12 final size:12
Alignment explanation
Indices: 29057962--29057993 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
29057952 CCCCCCTGCA
*
29057962 TGCTGCTGGACT
1 TGCTGCTGGACC
29057974 TGCTGCTGGACC
1 TGCTGCTGGACC
29057986 TGCTGCTG
1 TGCTGCTG
29057994 CAACCCTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.28, G:0.34, T:0.31
Consensus pattern (12 bp):
TGCTGCTGGACC
Found at i:29058414 original size:159 final size:157
Alignment explanation
Indices: 29058030--29058493 Score: 500
Period size: 158 Copynumber: 2.9 Consensus size: 157
29058020 AACTCCGTAT
* * * * *
29058030 GCTTAGATATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTA-TCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * **
29058095 CCGAACGGAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGAGCTATCGATCC
65 CCGAACGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCC
** * * *
29058160 TGCTGCTGCAACCCTCAGTTTGATTCAA
130 TGCTGCCACAACCCTCGGTCTGACTCAA
* * * * *
29058188 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAAA-CCACGAAACGAGTGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTAT-CCTAAG-CAAACCCACGAAACGAGCGTGCGGGCGCTA
* * *
29058251 AGCCGACCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGA
63 AGCCGAACGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCTCTGCGTGCTGCCGA
* ***
29058316 TCCCGCTGCCACAACCCTCGGTCTGACTGGG
127 TCCTGCTGCCACAACCCTCGGTCTGACTCAA
* * * *
29058347 GCTTAGACATGGAATGAACTCCCTATCCATAAGCAAACCCACGAAACGGGCGTGCAGGTGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATCC-TAAGCAAACCCACGAAACGAGCGTGCGGGCGCTAAG
*** ** * * *
29058412 CCGGTTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCGCTACGTGCTGCCGATCC
65 CCGAACGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCC
*
29058477 TGCTACCACAACCCTCG
130 TGCTGCCACAACCCTCG
29058494 ATCCGGTCCG
Statistics
Matches: 252, Mismatches: 47, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 128 0.51
159 122 0.48
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTAAGC
CGAACGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGGTCTGACTCAA
Found at i:29059254 original size:26 final size:26
Alignment explanation
Indices: 29059216--29059266 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29059206 GGCTCAAAAT
29059216 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCTGTATC
29059242 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCTGTAT
29059267 GGCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATC
Found at i:29059702 original size:26 final size:26
Alignment explanation
Indices: 29059663--29059715 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29059653 CTGGTCTGAT
29059663 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
29059689 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGACT-GTGAATGAACTCCGTATG
29059715 C
1 C
29059716 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:29060560 original size:303 final size:309
Alignment explanation
Indices: 29060063--29060849 Score: 804
Period size: 303 Copynumber: 2.5 Consensus size: 309
29060053 AACTCTGTAT
* ** * * ***
29060063 GCTTAGATATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAG-CATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCCGTGCGACAGCTCA
** * ** * * * * * *
29060127 GCCAACCGGAGAGGCAGAATGTGGAGGTCGAGGATCGACCCGGTCCCCCTTACGTGCTGTCGATC
65 GCCGGCCGAAGAGGCAGAATACGAAAGCCGGGGATCGGCCCGGTCCCCC-TGCGTGCTGTCGATC
* * * ** *
29060192 CTACTACCGTAACCCCCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGACTAAGTCA
129 CTGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTACGAATGAACTTCGTATGACGAAGTCA
* * *
29060257 ACCCACG-A-A-GT-GT-TGAG-TCGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGGC-CTG
194 ACCCACGAACACGTGGTCTGAGCT-GGTCGAAGAGGCATAATGCGCAAGCCGGAGATCGACTC-G
** * * * * ***
29060315 GTCCCCCTTTGCGTGCTGTCGGTCTCGCTACCACAACCCTTGGTCCGGCTGGG
257 GTCCCCCTCCGCGTGCTGCCAGTCCCACTACCACAACCCTCCATCCGGCTGGG
* *
29060368 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCACGAAACGGCCGTGCGACA-TTCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCCGTGCGACAGCTCAG
* * *
29060431 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCATGCTGTCGATCC
66 CCGGCCGAAGAGGCAGAATACGAAAGCCGGGGATCGGCCCGGTCCC-CCTGCGTGCTGTCGATCC
* * *
29060496 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTACGAATGAACTTCGTATG-CAGAAGTCA
130 TGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTACGAATGAACTTCGTATGAC-GAAGTCA
29060560 ACCCACGAAACGAGCGTACGGGTGCTGAGCTGGTCGAAGAGGCATAATGCGCAAGCCGGAGATCG
194 ACCCACG-AAC-A-CGT---GGT-CTGAGCTGGTCGAAGAGGCATAATGCGCAAGCCGGAGATCG
* * * * *
29060625 ACTCGGTCCCTCTCCGCGTGCTGCCAGTCCCACTGCCATAACCCTCCATTCTGCTGGG
252 ACTCGGTCCCCCTCCGCGTGCTGCCAGTCCCACTACCACAACCCTCCATCCGGCTGGG
* **
29060683 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCCGTGCGACAGCTCAG
* * * * * * *
29060748 CCGGTCGGAGAGGCAGAATATGAAAGTCGGGGATTGGCCCGATCCCCCCTGCGTGCTGTTGATCC
66 CCGGCCGAAGAGGCAGAATACGAAAGCCGGGGATCGGCCCGGT-CCCCCTGCGTGCTGTCGATCC
** *
29060813 TGCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACT
130 TGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACT
29060850 GGGAATTAAC
Statistics
Matches: 394, Mismatches: 68, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
302 1 0.00
303 115 0.29
304 16 0.04
305 35 0.09
307 1 0.00
309 2 0.01
313 2 0.01
315 114 0.29
316 20 0.05
317 85 0.22
318 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (309 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCCGTGCGACAGCTCAG
CCGGCCGAAGAGGCAGAATACGAAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCT
GCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTACGAATGAACTTCGTATGACGAAGTCAAC
CCACGAACACGTGGTCTGAGCTGGTCGAAGAGGCATAATGCGCAAGCCGGAGATCGACTCGGTCC
CCCTCCGCGTGCTGCCAGTCCCACTACCACAACCCTCCATCCGGCTGGG
Found at i:29060868 original size:158 final size:158
Alignment explanation
Indices: 29060275--29060861 Score: 472
Period size: 159 Copynumber: 3.7 Consensus size: 158
29060265 AGTGTTGAGT
* * * * *
29060275 CGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTTTGCGTGCTGTCGGT-C
1 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* ** * * * * **
29060339 TCGCTACCACAACCCTTGGTCC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
65 T-GCTGCCGTAACCCTCGATCCAGTC-CGATCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* ** * *
29060403 AA-CCACGAAACGGCCGTGCGACA-TTCATC
128 AACCCACGAAACGGGCGTGCGGGAGCTCAGC
* * *
29060432 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCATGCTGTCGATCCT
1 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * * ** * * * * ** *
29060497 GCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGAC-TACGAATGAACTTCGTATGCAGAAGTCAA
66 GCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA
* * * *
29060561 CCCACGAAACGAGCGTACGGGTGCTGAGC
130 CCCACGAAACGGGCGTGCGGGAGCTCAGC
* * * * * *
29060590 TGGTCGAAGAGGCATAATGCGCAAGCCGGAGATCGACTCGGTCCCTCTCC-GCGTGCTG-CCAGT
1 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-C-CCTGCGTGCTGTCGA-T
** * * * * * **
29060653 CCCACTGCCATAACCCTCCATTCTG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
63 CCTGCTGCCGTAACCCTCGATCCAGTC-CGATCTTAGACATGGAATGAACTCCCTATGCCTAAGC
29060717 CAACCCACGAAACGGGCGTGCGGGAGCTCAGC
127 CAACCCACGAAACGGGCGTGCGGGAGCTCAGC
* ** * * * * *
29060749 CGGTCGGAGAGGCAGAATATGAAAGTCGGGGATTGGCCCGATCCCCCCTGCGTGCTGTTGATCCT
1 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
*
29060814 GCTGCCGTAACCCTCGATCCAGTCCGATCTTAGAC-TGGGAATTAACTC
66 GCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACAT-GGAATGAACTC
29060862 TGTATGCTTA
Statistics
Matches: 328, Mismatches: 88, Indels: 27
0.74 0.20 0.06
Matches are distributed among these distances:
155 1 0.00
156 56 0.17
157 64 0.20
158 92 0.28
159 112 0.34
160 3 0.01
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (158 bp):
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGTAACCCTCGATCCAGTCCGATCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCGGGAGCTCAGC
Done.