Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 310 of 402
Found at i:29060886 original size:26 final size:26
Alignment explanation
Indices: 29060842--29060894 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29060832 CCAGTCCGAT
* *
29060842 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29060868 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
29060894 C
1 C
29060895 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29061259 original size:350 final size:341
Alignment explanation
Indices: 29060525--29061442 Score: 863
Period size: 354 Copynumber: 2.7 Consensus size: 341
29060515 CTGGTCTGAT
* * ** * * ** *
29060525 CTTAGACTACGAATGAACTTCGTATGCAGAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGC
1 CTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAGC
* * * * * * * * * * * *
29060590 TGGTCGAAGAGGCATAATGCGCAAGCCGGAGATC-GACTCGGTCCCTCTCC-GCGTGCTGCCAGT
66 CGATCGGAGAGGTAGAATGCACAAGTCGGGGATCAG-CCCGATCCC-C-CCTGCGTGCTGTCAAT
** * * ** * * * *
29060653 CCCACTGCCATAACCCTCCATTCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
128 CCTGCTGCCACAACCTTCGGTCCGGCTGTGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * ** * * *
29060718 AACCCACGAAACGGGCGTGCGGGAGCTCAGCCGGTCGGAGAGGCAGAATATGAAAGTCGGGGATT
193 AACCCACGAAATGAGCGTGCGGGCGCTCAGGCAATCGGAGAGGCAGAATATCAAAGCCGGGGATC
* * * *
29060783 GGCCCGATCCCCCCTGCGTGCTGTTGATCCTGCTGCCGTAACCCTCGATCCAGTCCGATCTTAGA
258 GGCCCGATCCCCCCTGCGTGCTG-TGATCCTACCGCCGCAACCCTCGATCCAGTCCGATCATAGA
* *
29060848 CTGGGAATTAACTCTGTATG
322 CTGAGAATGAACTCTGTATG
* * *
29060868 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCACTC-GA
1 CTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG-
* ** * * *
29060932 CCGATCGGAGAGGTATAATGCGTAAG-CTGGGATTAGCCCGGTTGCCCTCCACGTGCTGTCGATC
65 CCGATCGGAGAGGTAGAATGCACAAGTCGGGGATCAGCCC-GAT-CCC-CC-C-TGC-GT-G---
29060996 CTGCTATCAATCCTGCTGCCACAACCTTCGGTCCGGCTGTGGCTTAGACATGGAATGAACTCCGT
120 CTG---TCAATCCTGCTGCCACAACCTTCGGTCCGGCTGTGGCTTAGACATGGAATGAACTCCGT
* *
29061061 ATGCCTAAGCCAACCCACGAAATGAACGTACGGGCGCTCAGGCAATCGGAGAGGCAGAATA-CAC
182 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGGCAATCGGAGAGGCAGAATATCA-
** * * **
29061125 AAGCCGGGGATCGGTTCGGTCCCCCTCTGC-TGCTG-G-TCCTACCGCC-CAACCCTCGGTCTGG
246 AAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTGATCCTACCGCCGCAACCCTCGATCCAG
29061186 TCCGATCATAGACTGAGAATGAACTCTGTATG
310 TCCGATCATAGACTGAGAATGAACTCTGTATG
* * * *
29061218 CTTAGAC-ACAGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAG
1 CTTAGACTA-AGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG
*
29061282 CCGATCGGAGAGGTAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGATCGGAGAGGTAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCC
** * *
29061347 TGCTGCTGCAACCTTCGGTCCGGTCCGAT--CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT
130 TGCTGCCACAACCTTCGGTCCGG-CTG-TGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
* *
29061409 CAACCCATGAAATGAGCGTGCGGGCGCTGAGGCA
192 CAACCCACGAAATGAGCGTGCGGGCGCTCAGGCA
29061443 TAATGCATTG
Statistics
Matches: 476, Mismatches: 76, Indels: 51
0.79 0.13 0.08
Matches are distributed among these distances:
337 1 0.00
338 87 0.18
339 2 0.00
340 1 0.00
341 3 0.01
342 8 0.02
343 78 0.16
344 7 0.01
345 2 0.00
346 5 0.01
347 3 0.01
348 3 0.01
349 4 0.01
350 118 0.25
351 23 0.05
352 1 0.00
353 1 0.00
354 125 0.26
355 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
CTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAGC
CGATCGGAGAGGTAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCCT
GCTGCCACAACCTTCGGTCCGGCTGTGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAATGAGCGTGCGGGCGCTCAGGCAATCGGAGAGGCAGAATATCAAAGCCGGGGATCGGC
CCGATCCCCCCTGCGTGCTGTGATCCTACCGCCGCAACCCTCGATCCAGTCCGATCATAGACTGA
GAATGAACTCTGTATG
Found at i:29061933 original size:26 final size:26
Alignment explanation
Indices: 29061882--29061934 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29061872 TCGGTCCTAT
*
29061882 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
29061908 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACATATG
29061934 C
1 C
29061935 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:29062262 original size:159 final size:158
Alignment explanation
Indices: 29062066--29062370 Score: 391
Period size: 159 Copynumber: 1.9 Consensus size: 158
29062056 CTGATCCGAT
* * * * * *
29062066 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGTTGAG-
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCTCAGT
* * *
29062130 CTGGTCGGAGAGGCATAATGCACAAGCC-GTGGATCGACCCGGTCCCCCTCTGCATGCTGCCAAA
66 C-GGTCGAAGAGGCAGAATGCACAAGCCAG-GGATCGACCCGATCCCCCT-TGCATGCTGCCAAA
29062194 CCCGCTACCACAACCCTCGATCTGGCTGGGG
128 CCCGCTACCACAACCCTCGATCTGGCTGGGG
*
29062225 CTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCATGCGGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCTCAG
** * * * *
29062289 TCGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCTCTTGCATGCTGTCGATCC
65 TCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTTGCATGCTGCCAAACC
* *
29062354 TGCTACCGCAACCCTCG
130 CGCTACCACAACCCTCG
29062371 GTGCAATCCA
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
158 29 0.23
159 94 0.75
160 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCTCAGT
CGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTTGCATGCTGCCAAACCC
GCTACCACAACCCTCGATCTGGCTGGGG
Found at i:29062424 original size:26 final size:26
Alignment explanation
Indices: 29062383--29062435 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29062373 GCAATCCAAT
29062383 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29062409 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
29062435 C
1 C
29062436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29063559 original size:159 final size:158
Alignment explanation
Indices: 29063130--29063631 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 158
29063120 AACTCTGTAT
*
29063130 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAG
* * * * * * * *
29063195 TCGGCCGGAGAGGTAGATTGCACAAGTCGGGGATCAGCCCGATCCCTC-CTGTGTGCTGTCAATC
66 TCGGCC-GAGAGGAAGAATGCGCAAGTCGGAGATCGGCCCGATCCCCCTCTGCGTGCTGCCAATC
* * * *
29063259 CTGCTGCCGCAACCCTTGGTCCGGTCTGA
130 CTACTGCCACAACCCTCGCTCCGGTCTGA
* * * * * * * *
29063288 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTACAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCA
* * * * * * * *
29063352 GCCGGTCGAAGAAGCATAATGCGCAAG-CCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
65 GTCGGCCG-AGAGGAAGAATGCGCAAGTCGGA-GATCGGCCCGATCCCCCTCTGCGTGCTGCCAA
* *
29063416 T-CTCACTGCCACAACCCTCGCTTCGG-CTGGG
128 TCCT-ACTGCCACAACCCTCGCTCCGGTCT-GA
* * *
29063447 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAG
* * ** * * * **
29063512 TCGGCCGAGAGGAAGAATGTGCAGGTCGGAGATCGGCTTGGTACCCC-CTACGTGCTGCTTATCC
66 TCGGCCGAGAGGAAGAATGCGCAAGTCGGAGATCGGCCCGATCCCCCTCTGCGTGCTGCCAATCC
* ** * *
29063576 TGCTGCTGCAACCCTCAG-TCCGATCCGA
131 TACTGCCACAACCCTC-GCTCCGGTCTGA
*
29063604 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29063632 TTAGACTGAG
Statistics
Matches: 267, Mismatches: 65, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 56 0.21
158 118 0.44
159 91 0.34
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAG
TCGGCCGAGAGGAAGAATGCGCAAGTCGGAGATCGGCCCGATCCCCCTCTGCGTGCTGCCAATCC
TACTGCCACAACCCTCGCTCCGGTCTGA
Found at i:29064280 original size:26 final size:26
Alignment explanation
Indices: 29064251--29064329 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
29064241 CTGGTCCGAT
29064251 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
29064277 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
*
29064303 CTTAGACTAGGGATAAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
29064329 C
1 C
29064330 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:29064944 original size:695 final size:665
Alignment explanation
Indices: 29063678--29065869 Score: 2155
Period size: 695 Copynumber: 3.2 Consensus size: 665
29063668 GGCCGGTCGG
* * **
29063678 AGAGGCATAATGTCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGTTGTCGATCCCGCTATCG
1 AGAGGCATAATGGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCG
*
29063743 GTCCTGCTACCACAACCCTTGGTCCGACCT-GGGCTTAGACATGGAATGAACTTCGTATGCCTAA
66 GTCCTGCTACCACAACCCTTGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* ** * * * * *
29063807 GCCAACCCATAAAACGAGTGTAAGGGCACTAAGCTGGCTGGAGAGGCAGAATGTGCATGTCGGGG
130 GCCAACCCACAAAACGAGTGTGCGGGCGCTCAGCTGGC-GGAGAGGCAGAATGCGCAAGTCGAGG
* * ** * * **
29063872 TTCAG-CCTGGTCCCCCCTGTGTGCTGT-AGATCCTACTGTCATAACCCTTGATCTAATCTGATC
194 ATCAGACC-GGTCCCCCCTGCGTGCTGTCA-A-CAGACTATCATAACCCTTGGTCCGATC-GATC
* * * * * *
29063935 TTAGACTG-GCAAAGAACTCCATATGCATAAGTCAACCCACGAAACGAGTGTTCGGATGTTGTGC
255 TTAGACTGAG-AATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGC
* * * *
29063999 CAGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTACTG-TCGGTC
319 GA-CCGAAGAGGCATAATGCGCAAG-TTGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCT-GGTC
* * * * *
29064063 CCACTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAACCA
381 CCGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCA
* * * * * * * *
29064128 ACACACGAAACAGGTGTGCGGGTGCTTAGCCGATCGGAGGGGTAGAATGTGCAAGTCGGGGATTA
446 ACACACGAAACGGGTGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGGAGATCA
* * * *
29064193 GCCCGGTATCCCCTGCGTGCTACCGATCCTACTGACGTAACCCTCAATCTGGTCCGATCTTAGAC
511 GCCCGGT-CCCCCTGCGTGCTACCGATCCTGCTGACGTAACCCTCAGTCCGGTCCGATCTTAGAC
*
29064258 TGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCTTAGACTAGGGATAAACTC
575 TGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGC--AGA--A--G-TAAAC-C
* *
29064323 CGTATGCCTAAGTCAAC-AGACGAAATGAGCATGCAAGTGCTCAATCGACCGA
632 C--ATG----A---AACGAG-CG---T-A-CAGGC-A---CTCAACCGACCGA
* * * * * *
29064375 AGAGGCATAATGCGCAAGTCGGGGATTAGCCTGGTCCCCCTCTGCATGCTGTCGATCCCACTGCC
1 AGAGGCATAATG-GCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCC
* * *
29064440 GGTCCTTCTGCCACAACCCTCT-GTCCGACTGGGGCTTAGACATGGAATGAACTCCGTACGCCTA
65 GGTCCTGCTACCACAACCCT-TGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
** * * * *
29064504 AGCCAACCCACGGATCGAGTGCGCGAGCGCTCAGCTGGTCGGAGAGGCAGAATACGCAAGTCGAG
129 AGCCAACCCACAAAACGAGTGTGCGGGCGCTCAGCTGG-CGGAGAGGCAGAATGCGCAAGTCGAG
* * *
29064569 GATCAGACCAGT-CCCCCTGCGTGCTGTCAACAGACTATCACAACCCCTGGTCCGATCGATCTTA
193 GATCAGACCGGTCCCCCCTGCGTGCTGTCAACAGACTATCATAACCCTTGGTCCGATCGATCTTA
* *
29064633 GACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGTCGAC
258 GACTGAGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAG-CGAC
* *
29064698 CGAAGAGGCATAATGCACAAGTTGAGGATCGGCCC-GATCCCCCTCTGTGTGCTGCTGGTCCCGC
322 CGAAGAGGCATAATGCGCAAGTTG-GGATCGGCCCAG-TCCCCCTCTGCGTGCTGCTGGTCCCGC
** * ** *
29064762 TGGCACAACCCTCGGTCTGGCAGGGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACAT
385 TACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACAC
* * * * * * *
29064827 ATGAAATGGGTGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGTCAGAGATCGGCCC
450 ACGAAACGGGTGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGGAGATCAGCCC
** * * * *
29064892 GGTCCCCCATGCGTGCTGTCAATCTTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGAG
515 GGTCCCCC-TGCGTGCTACCGATCCTGCTGACGTAACCCTCAGTCCGGTCCGATCTTAGACTGAG
* * * *
29064957 AATGAACTTCGTATGCTTAGACTAGGGATGAACTCCATATGCCGAAGTCAACCCATGAAACGAGC
579 AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCAGAAGTAAACCCATGAAACGAGC
* *
29065022 GTACGGGCACTCAGCCGACCGA
644 GTACAGGCACTCAACCGACCGA
* * * * * *
29065044 AAAAGCATAATGTGTAAGCCGAGGATCAGCCCGGTCCCCTTCTACGTGCTGTCGATCCCGCTGCT
1 AGAGGCATAATG-GCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCC
* * * *
29065109 GGTCCTGATTCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAA
65 GGTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * *
29065174 GCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCGTAAGTCGAGG
130 GCCAACCCACAAAACGAGTGTGCGGGCGCTCAGCTGG-CGGAGAGGCAGAATGCGCAAGTCGAGG
* * ** * * * *
29065239 ATC-GACCCGGTCCCCCCTACATGCTACCGATCTTG-CTACCATAA-CCTTCGGTCCGGTTCGAT
194 ATCAGA-CCGGTCCCCCCTGCGTGCTGTC-AAC-AGACTATCATAACCCTT-GGTCC-GATCGAT
* * *
29065301 CTTAGACTGAGAATCAACTCTATATGCATAAGTCAACCCATGAAACGAGCGTAC-GGTCGCTGAG
254 CTTAGACTGAGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGT-GCTGAG
* * * * *
29065365 CCGACCGAAAAGGCATAATGCGCAAGTCGGAGATCGCCCCAGTCCCCTTCTGCGTGCTACTGGTC
318 -CGACCGAAGAGGCATAATGCGCAAGTTGG-GATCGGCCCAGTCCCCCTCTGCGTGCTGCTGGTC
* *
29065430 CCGCTACCACAACCCTCGATCCCCGGTTGGGGCTTAGACATGGAATCAACTCCCTG-TGCCTAAG
381 CCGCTACCACAACCCTCGGT--CCGGTTGGGGCTTAGACATGGAATGAACTCCC-GATGCCTAAG
* * * ** * *
29065494 CCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGCCCGAAGAGGCAGAATGCGTAAGCCGGAGA
443 CCAACACACGAAACGGGTGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGGAGA
* * * * * * *
29065559 CCTGTCCAGTCCCCCTGCGTGCTACCGATCCTGCT-ACCGCAACCCTCAGTCCGATCTGATCTTA
508 TCAGCCCGGTCCCCCTGCGTGCTACCGATCCTGCTGA-CGTAACCCTCAGTCCGGTCCGATCTTA
* * * ** * *
29065623 GACTGCGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
572 GACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCAGAAGTAAACCCATGA
* * * ** * *
29065688 AATGAGCGTGCAGGCGCTCAGTCGGCCGG
637 AACGAGCGTACAGGCACTCAACCGACCGA
* * * * * *
29065717 AGAGGCATAATGCGTAAGTCGGGGATCAGCACGGTCCCCCTCTACGTGTTGTCGATCCCGTTGTC
1 AGAGGCATAATG-GCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCC
* * * ** ** *
29065782 GATCCTGCTGCTACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAA
65 GGTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* ** *
29065847 ACCAACCCATGAAACGAGCGTGC
130 GCCAACCCACAAAACGAGTGTGC
29065870 CGATGCTCAA
Statistics
Matches: 1247, Mismatches: 221, Indels: 78
0.81 0.14 0.05
Matches are distributed among these distances:
668 3 0.00
669 181 0.15
670 15 0.01
671 18 0.01
672 133 0.11
673 253 0.20
674 100 0.08
675 2 0.00
678 5 0.00
679 2 0.00
681 1 0.00
685 3 0.00
687 2 0.00
688 4 0.00
689 1 0.00
691 1 0.00
693 2 0.00
694 7 0.01
695 304 0.24
696 23 0.02
697 29 0.02
698 154 0.12
699 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (665 bp):
AGAGGCATAATGGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCG
GTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACAAAACGAGTGTGCGGGCGCTCAGCTGGCGGAGAGGCAGAATGCGCAAGTCGAGGAT
CAGACCGGTCCCCCCTGCGTGCTGTCAACAGACTATCATAACCCTTGGTCCGATCGATCTTAGAC
TGAGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGCGACCGAA
GAGGCATAATGCGCAAGTTGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCTGGTCCCGCTACCAC
AACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACACACGAAA
CGGGTGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGGAGATCAGCCCGGTCCC
CCTGCGTGCTACCGATCCTGCTGACGTAACCCTCAGTCCGGTCCGATCTTAGACTGAGAATGAAC
TCCGTATGCTTAGACTAGGGATGAACTCCGTATGCAGAAGTAAACCCATGAAACGAGCGTACAGG
CACTCAACCGACCGA
Found at i:29065510 original size:161 final size:156
Alignment explanation
Indices: 29065119--29065605 Score: 494
Period size: 158 Copynumber: 3.1 Consensus size: 156
29065109 GGTCCTGATT
* * * ** *
29065119 CCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATCAACTCCATATGCCTAAGCCAACCCAC
* * * * * *
29065184 AAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCGTAAGTC-GAGGATCGACCCG
66 GAAACGAGCGTGCGGTCGCTCAGCCGACCGAAGAGGCAGAATGCGTAAGTCGGA-GATCG-CCCA
* * *
29065248 GTCCCCCCTACATGCTACCGATCTTGCTA
129 GT-CCCCCTGCGTGCTACCGATCCTGCTA
* * * * ** * * *
29065277 CCATAACCTTCGGTCCGGTTCGATCTTAGAC-TGAGAATCAACTCTATATGCATAAGTCAACCCA
1 CCACAACCCTCGATCCGGTTGGGGCTTAGACATG-GAATCAACTCCATATGCCTAAGCCAACCCA
* * * * * *
29065341 TGAAACGAGCGTACGGTCGCTGAGCCGACCGAAAAGGCATAATGCGCAAGTCGGAGATCGCCCCA
65 CGAAACGAGCGTGCGGTCGCTCAGCCGACCGAAGAGGCAGAATGCGTAAGTCGGAGATCG-CCCA
* * *
29065406 GTCCCCTTCTGCGTGCTACTGGTCCCGCTA
129 GTCCCC--CTGCGTGCTACCGATCCTGCTA
* *
29065436 CCACAACCCTCGATCCCCGGTTGGGGCTTAGACATGGAATCAACTCCCTGTGCCTAAGCCAACCC
1 CCACAACCCTCGAT--CCGGTTGGGGCTTAGACATGGAATCAACTCCATATGCCTAAGCCAACCC
* * * *
29065501 ACGAAACGAGCGTGCGGGT-GCTCAGCCGCCCGAAGAGGCAGAATGCGTAAGCCGGAGACCTGTC
64 ACGAAACGAGCGTGC-GGTCGCTCAGCCGACCGAAGAGGCAGAATGCGTAAGTCGGAGATC-GCC
29065565 CAGTCCCCCTGCGTGCTACCGATCCTGCTA
127 CAGTCCCCCTGCGTGCTACCGATCCTGCTA
*
29065595 CCGCAACCCTC
1 CCACAACCCTC
29065606 AGTCCGATCT
Statistics
Matches: 263, Mismatches: 57, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.02
158 99 0.38
159 58 0.22
161 94 0.36
162 6 0.02
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.18
Consensus pattern (156 bp):
CCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATCAACTCCATATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGTCGCTCAGCCGACCGAAGAGGCAGAATGCGTAAGTCGGAGATCGCCCAGT
CCCCCTGCGTGCTACCGATCCTGCTA
Found at i:29065648 original size:26 final size:26
Alignment explanation
Indices: 29065619--29065671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29065609 CCGATCTGAT
*
29065619 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
29065645 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
29065671 C
1 C
29065672 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:29065763 original size:673 final size:667
Alignment explanation
Indices: 29064289--29066001 Score: 1965
Period size: 673 Copynumber: 2.5 Consensus size: 667
29064279 TAGACTAGGG
* * ** *
29064289 ATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACAGACGAAATGAGCA
1 ATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
* * * * * *
29064354 TGCAAGTGCTCAATCGACCGAAGAGGCATAATGCGCAAGTCGGGGATTAGCCTGGTCCCCCTCTG
66 TGCAGGCGCTCAGTCGACCGAAGAGGCATAATGCGTAAGTCGGGGATCAGCC-GGTCCCCCTCTA
* * * * *
29064419 CATGCTGTCGATCCCACTGCCGGTCCTTCTGCCACAACCCTCTGTCCGACTGGGGCTTAGACATG
130 CGTGCTGTCGATCCCGCTGCTGGTCCTGCTGCCACAACCCT-TGTCCGGCTGGGGCTTAGACATG
* * * * * * * *
29064484 GAATGAACTCCGTACGCCTAAGCCAACCCACGGATCGAGTGCGCGAGCGCTCAGCTGGTCGGAGA
194 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGA
* * * * * *
29064549 GGCAGAATACGCAAGTCGAGGATCAGA-CCAGT-CCCCCTGCGTGCTGTC-AACAGACTATCACA
259 GGCAGAATACGCAAGTCGAGGATC-GACCCGGTCCCCCCTGCATGCTGCCGATCTG-CTACCACA
* *
29064611 ACCCCTGGTCCGATCGATCTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
322 ACCTC-GGTCCGATCGATCTTAGACTGAGAATGAACTCCATATGCATAAGTCAACCCACGAAACG
* * * * *
29064676 AGCGTGCGGGTGCTGAGTCGACCGAAGAGGCATAATGCACAAGTTGAGGATCGGCCCGATCCCCC
386 AGCGTACGGGTGCTGAGCCGACCGAAAAGGCATAATGCACAAGTGGAGGATCGCCCCGATCCCCC
* * ** * * *
29064741 TCTGTGTGCTGCTGGTCCCGCTGGCACAACCCTCGGTCTGGCAGGGGCTTAGACATGGAATGAAC
451 TCTGCGTGCTACTGGTCCCGCTACCACAACCCTCGATCCGGCAGGGGCTTAGACATGGAATCAAC
* * * * * * ** *
29064806 TCCCGATGCCTAAGCCAACATATGAAATGGGTGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAAT
516 TCCCGATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGCCCGAAGAGGCAGAAT
* * * ** * ** * *
29064871 GCGTAAGTCAGAGATCGGCCCGGTCCCCCATGCGTGCTGTCAATCTTGCTGTCGTAACCCTCGGT
581 GCGTAAGCCAGAGACCGGCCCAGTCCCCCATGCGTGCTACCAATCCTGCTACCGCAACCCTCAGT
*
29064936 CCGGTCCGATCTTAGACTGAGA
646 CCGATCCGATCTTAGACTGAGA
* * * *
29064958 ATGAACT-TCGTATGCTTAGACTAGGGATGAACTCCATATGCCGAAGTCAACCCATGAAACGAGC
1 ATGAACTCT-GTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
* * * * * * * * * *
29065022 GTACGGGCACTCAGCCGACCGAAAAAGCATAATGTGTAAGCCGAGGATCAGCCCGGTCCCCTTCT
65 GTGCAGGCGCTCAGTCGACCGAAGAGGCATAATGCGTAAGTCGGGGATCAG-CCGGTCCCCCTCT
* *
29065087 ACGTGCTGTCGATCCCGCTGCTGGTCCTGATTCCACAACCCTTGGTCCGGCTGGGGCTTAGACAT
129 ACGTGCTGTCGATCCCGCTGCTGGTCCTGCTGCCACAACCCTT-GTCCGGCTGGGGCTTAGACAT
* *
29065152 GGAATGTACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAG
193 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAG
* * * * * *
29065217 AGGTAGAATGCGTAAGTCGAGGATCGACCCGGTCCCCCCTACATGCTACCGATCTTGCTACCATA
258 AGGCAGAATACGCAAGTCGAGGATCGACCCGGTCCCCCCTGCATGCTGCCGATC-TGCTACCACA
* * * *
29065282 ACCTTCGGTCCGGTTCGATCTTAGACTGAGAATCAACTCTATATGCATAAGTCAACCCATGAAAC
322 ACC-TCGGTCC-GATCGATCTTAGACTGAGAATGAACTCCATATGCATAAGTCAACCCACGAAAC
*
29065347 GAGCGTAC-GGTCGCTGAGCCGACCGAAAAGGCATAATGCGCAAGTCGGA-GATCGCCCC-AGTC
385 GAGCGTACGGGT-GCTGAGCCGACCGAAAAGGCATAATGCACAAGT-GGAGGATCGCCCCGA-TC
* **
29065409 CCCTTCTGCGTGCTACTGGTCCCGCTACCACAACCCTCGATCCCCGGTTGGGGCTTAGACATGGA
447 CCCCTCTGCGTGCTACTGGTCCCGCTACCACAACCCTCGAT--CCGGCAGGGGCTTAGACATGGA
* *
29065474 ATCAACTCCCTG-TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGCCCGAAGAG
510 ATCAACTCCC-GATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGCCCGAAGAG
* * * *
29065538 GCAGAATGCGTAAGCCGGAGACCTGTCCAGTCCCCC-TGCGTGCTACCGATCCTGCTACCGCAAC
574 GCAGAATGCGTAAGCCAGAGACCGGCCCAGTCCCCCATGCGTGCTACCAATCCTGCTACCGCAAC
* *
29065602 CCTCAGTCCGATCTGATCTTAGACTGCGA
639 CCTCAGTCCGATCCGATCTTAGACTGAGA
*
29065631 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
1 ATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
* *
29065696 TGCAGGCGCTCAGTCGGCCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCACGGTCCCCCTCTA
66 TGCAGGCGCTCAGTCGACCGAAGAGGCATAATGCGTAAGTCGGGGATCAGC-CGGTCCCCCTCTA
* * * * * *
29065761 CGTGTTGTCGATCCCGTTG-TCGATCCTGCTGCTACAACCCTCAGTCCGGTTGGGGCTTAGACAT
130 CGTGCTGTCGATCCCGCTGCT-GGTCCTGCTGCCACAACCCT-TGTCCGGCTGGGGCTTAGACAT
* * * * ** * * *
29065825 GGAATGAACTTCGTATGCCTAAACCAACCCATGAAACGAGCGTGCCGATGCTCAACCGACC-AAG
193 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAG
* * *
29065889 AAAGGCAAAATACGCAAG-CCAGGTATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTACC
258 --AGGCAGAATACGCAAGTCGAGG-ATCGACCCGGTCCCCCCTGCATGCTGCCGAT-CTGCTACC
* *
29065953 GCAACCCTCGGTCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGC
319 ACAA-CCTCGGTCCGATC-GATCTTAGACTGAGAATGAACTCCATATGC
29066002 TTAGACATGG
Statistics
Matches: 865, Mismatches: 154, Indels: 45
0.81 0.14 0.04
Matches are distributed among these distances:
668 3 0.00
669 237 0.27
670 14 0.02
671 20 0.02
672 137 0.16
673 267 0.31
674 183 0.21
675 4 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (667 bp):
ATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
TGCAGGCGCTCAGTCGACCGAAGAGGCATAATGCGTAAGTCGGGGATCAGCCGGTCCCCCTCTAC
GTGCTGTCGATCCCGCTGCTGGTCCTGCTGCCACAACCCTTGTCCGGCTGGGGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGG
CAGAATACGCAAGTCGAGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCTGCTACCACAACCT
CGGTCCGATCGATCTTAGACTGAGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGT
ACGGGTGCTGAGCCGACCGAAAAGGCATAATGCACAAGTGGAGGATCGCCCCGATCCCCCTCTGC
GTGCTACTGGTCCCGCTACCACAACCCTCGATCCGGCAGGGGCTTAGACATGGAATCAACTCCCG
ATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGCCCGAAGAGGCAGAATGCGTA
AGCCAGAGACCGGCCCAGTCCCCCATGCGTGCTACCAATCCTGCTACCGCAACCCTCAGTCCGAT
CCGATCTTAGACTGAGA
Found at i:29066004 original size:26 final size:26
Alignment explanation
Indices: 29065975--29066027 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29065965 CCGATCTGAT
29065975 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
29066001 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29066027 C
1 C
29066028 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29066937 original size:26 final size:26
Alignment explanation
Indices: 29066901--29066951 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
29066891 CTAATCTAAT
29066901 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
29066927 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
29066952 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:29075172 original size:26 final size:26
Alignment explanation
Indices: 29075121--29075173 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29075111 CCTGTCTGAT
* *
29075121 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29075147 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29075173 C
1 C
29075174 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29075864 original size:26 final size:26
Alignment explanation
Indices: 29075826--29075878 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29075816 GGCTCAAACT
29075826 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29075852 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29075878 C
1 C
29075879 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29076205 original size:26 final size:26
Alignment explanation
Indices: 29076169--29076221 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29076159 TCAGTTCGAT
*
29076169 CTTAGACT-GGGATTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
29076195 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29076221 C
1 C
29076222 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29078489 original size:26 final size:26
Alignment explanation
Indices: 29078448--29078500 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29078438 CTGGTCTGAT
29078448 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
29078474 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGAGAATGAACTCCGTATG
29078500 C
1 C
29078501 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:29079191 original size:26 final size:26
Alignment explanation
Indices: 29079153--29079205 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29079143 GGCTCAAACT
29079153 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29079179 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
29079205 C
1 C
29079206 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29079525 original size:26 final size:26
Alignment explanation
Indices: 29079496--29079548 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
29079486 TCGGTTTGAT
29079496 CTTAGACT-GGGATTGAACT-TCGTATG
1 CTTAGACTGGGGA-TGAACTCT-GTATG
*
29079522 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
29079548 C
1 C
29079549 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:29079918 original size:26 final size:26
Alignment explanation
Indices: 29079889--29079940 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29079879 CCAGACCGAT
29079889 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
29079915 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
29079941 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:29081318 original size:159 final size:157
Alignment explanation
Indices: 29080822--29081448 Score: 534
Period size: 159 Copynumber: 4.0 Consensus size: 157
29080812 CCCCCTGAAT
** * * * * * *
29080822 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTTAACCCATAAAATGGGTGTACGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* * ** *
29080887 CTGATC-GATGAGGCGTAATGCGCAAGCCGGGGATTGGCCCGATCCCCCTCTGCATGCTGTCGAT
66 C-GATCGGA-AAGGCATAATGCGCAAGCTAGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT
* * * * *
29080951 CCCACTGCCATAACCCTCAGTCCGGCTGTG
129 -CCACTACCACAACCCTCGGTCCGGTTGGG
** * *
29080981 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* * * * * * *
29081046 CCGACCGCAAAGGCA-AATGTGCAAGCTAGGGA-CAGGCCCGGTCCCCC-CTCCGTGCTGTCAAT
66 -CGATCGGAAAGGCATAATGCGCAAGCTAGGGATC-GGCCCGATCCCCCTCTGCATGCTGTCGAT
* * * ** *
29081108 CCTGCTACCACAACCCTCGGTTCAGTCCGA
129 CC-ACTACCACAACCCTCGGTCCGGTTGGG
* * * * *
29081138 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGA
* * *
29081202 GTCGATCGGAAAGGCATAATGCGCAAGCTAGGGATCGACCAGATCCCCCTCTGCATGCTGTCGGT
65 G-CGATCGGAAAGGCATAATGCGCAAGCTAGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT
29081267 CTCACTACCACAACCCTCGGTCCGGTTGGG
129 C-CACTACCACAACCCTCGGTCCGGTTGGG
* * * * * *
29081297 GCCTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* * * ** * * *
29081362 CCGA-CTGGAGAGGCAGAATGCGTAAGCCGGGGAAT-TGCCCGATCCCCC-CTG-AGTGCTGCCA
66 -CGATC-GGAAAGGCATAATGCGCAAGCTAGGG-ATCGGCCCGATCCCCCTCTGCA-TGCTGTCG
* *
29081423 ATCCTGCTGCCACAACCCTCGGTCCG
127 ATCC-ACTACCACAACCCTCGGTCCG
29081449 ATCTGATCTT
Statistics
Matches: 372, Mismatches: 82, Indels: 29
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 96 0.26
158 83 0.22
159 184 0.49
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAG
CGATCGGAAAGGCATAATGCGCAAGCTAGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
ACTACCACAACCCTCGGTCCGGTTGGG
Found at i:29082621 original size:159 final size:156
Alignment explanation
Indices: 29082215--29082716 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 156
29082205 ACTCCGTATG
* *
29082215 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * *
29082280 CGGTCGGAGAGTCAGAATGCACAAGCTGGGGACCGATCCGGTCCCCCCTGCATGCTGTCAATCCT
66 CGGAC-GAGAGACAGAATGCACAAGC-GGGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCCT
* * * *
29082345 ACTGCCGCAACCCTCGATCCGGTTTGAT
129 ACTGCCACAACCCTCGATCCAGCTCGAT
* * * *
29082373 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
29082437 CCGGACGAAAAGGCACAATGCACAAGTCAGGGATCGGCCCGGTCTCCCTCTGCGTGCTG-CTAGT
65 CCGGACG-AGAGACAGAATGCACAAG-CGGGGATCGACCCGGTC-CCCCCTGCATGCTGTC-AAT
* * * * *
29082501 -CTCGCTGCCATAACCGTC-AGTCTAGCTCGGT
126 CCT-ACTGCCACAACCCTCGA-TCCAGCTCGAT
* * *
29082532 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *** ** **
29082597 AGGCCAGAGAGACAGAATGCACAAGCCGGGGATCTG-CCTTATCCCCCCTGTGTGCTACCAATCC
66 CGGAC-GAGAGACAGAATGCACAAG-CGGGGATC-GACCCGGTCCCCCCTGCATGCTGTCAATCC
* * * * ** *
29082661 TATTGTCGCAACCCTCGGTCTGGCCCGAT
128 TACTGCCACAACCCTCGATCCAGCTCGAT
*
29082690 CTCAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29082717 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 145 0.54
159 120 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGACGAGAGACAGAATGCACAAGCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCAATCCTAC
TGCCACAACCCTCGATCCAGCTCGAT
Found at i:29082729 original size:26 final size:26
Alignment explanation
Indices: 29082693--29082745 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29082683 GCCCGATCTC
29082693 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
29082719 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
29082745 A
1 A
29082746 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:29089802 original size:21 final size:21
Alignment explanation
Indices: 29089773--29089820 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
29089763 GGATCGGCCT
29089773 GGTCCCCCTCTACATGCTGCC
1 GGTCCCCCTCTACATGCTGCC
* *
29089794 GGTCTCCCTCTGCATGCTGCC
1 GGTCCCCCTCTACATGCTGCC
29089815 GGTCCC
1 GGTCCC
29089821 GCTGCCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.06, C:0.46, G:0.23, T:0.25
Consensus pattern (21 bp):
GGTCCCCCTCTACATGCTGCC
Found at i:29089825 original size:19 final size:20
Alignment explanation
Indices: 29089785--29089825 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
29089775 TCCCCCTCTA
*
29089785 CATGCTGCCGGTCTCCCTCTG
1 CATGCTGCCGG-CTCCCGCTG
29089806 CATGCTGCCGG-TCCCGCTG
1 CATGCTGCCGGCTCCCGCTG
29089825 C
1 C
29089826 CATAACCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
21 11 0.58
ACGTcount: A:0.05, C:0.44, G:0.27, T:0.24
Consensus pattern (20 bp):
CATGCTGCCGGCTCCCGCTG
Found at i:29090042 original size:26 final size:26
Alignment explanation
Indices: 29090013--29090063 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29090003 CCGATCTGAT
29090013 CTTAAACTACGAATGAACTCCGTATA
1 CTTAAACTACGAATGAACTCCGTATA
* ** *
29090039 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAAACTACGAATGAACTCCGTAT
29090064 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAAACTACGAATGAACTCCGTATA
Found at i:29090422 original size:26 final size:26
Alignment explanation
Indices: 29090393--29090445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29090383 CTGATCCGAT
*
29090393 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29090419 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29090445 C
1 C
29090446 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29090675 original size:158 final size:158
Alignment explanation
Indices: 29090419--29090920 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 158
29090409 ACTCTGTATG
*
29090419 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
29090484 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCTGATCCCCCCTACGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCTGATCCCCCCTGCGTGCTGTCGATCCT
* *
29090549 ACTGTCACAACCCTCATTCTGATCCGAT
131 ACTGTCACAACCCTCAGTCCGATCCGAT
* * * *
29090577 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
29090641 CCGGTCGGAGAGGCATAATACGCAAGTCGAGGATCAGCC-CAGTCCCCCTTTGCGTGCTGCCTAT
65 CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCTGA-TCCCCC-CTGCGTGCTGTCGAT
* * * **
29090705 -CTCCCTTGCCACAACCCTCAGACCGACTGGGA-
128 CCT-AC-TGTCACAACCCTCAGTCCGA-TCCGAT
* * * * * *
29090737 ATTAGACATGGAATGAACTCCCTATGCGTAAGCCAAACCACGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
29090802 CAATCGGAGAGGCAGAATGCGTAAGTCGGGGATC-ACCTTGGTCCCCCCTGCGTGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACC-TGATCCCCCCTGCGTGCTGTCGATCC
** * ** *
29090866 TACTGTCGTAACCTTTGGTCCGGTCCGAT
130 TACTGTCACAACCCTCAGTCCGATCCGAT
*
29090895 CTT-G-GATGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29090921 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 23 0.08
158 110 0.41
159 27 0.10
160 105 0.39
161 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCTGATCCCCCCTGCGTGCTGTCGATCCT
ACTGTCACAACCCTCAGTCCGATCCGAT
Found at i:29090792 original size:160 final size:158
Alignment explanation
Indices: 29090420--29090870 Score: 471
Period size: 160 Copynumber: 2.8 Consensus size: 158
29090410 CTCTGTATGC
*
29090420 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
29090485 GACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCTGATCCCCCCTACGTGCTGTCGATCCTA
66 GATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCAGATCCCCCCTACGTGCTGCCGATCCTA
* ** * *
29090550 CTGTCACAACCCTCATTCTGATCCGATC
131 CTGCCACAACCCTCAGACCGATCCGATA
* * * *
29090578 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
29090642 CGGTCGGAGAGGCATAATACGCAAGTCGAGGATCAGCCCAG-TCCCCCTTTGCGTGCTGCCTAT-
65 CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCA-ACCAGATCCCCC-CTACGTGCTGCCGATC
* **
29090705 CTCCCTTGCCACAACCCTCAGACCGACTGGGA-A
128 CT-AC-TGCCACAACCCTCAGACCGA-TCCGATA
* * * * *
29090738 TTAGACATGGAATGAACTCCCTATGCGTAAGCCAAACCACGAAACGGGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
29090803 AATCGGAGAGGCAGAATGCGTAAGTCGGGGATC-ACCTTGGTCCCCCCTGCGTGCTGTCGATCCT
66 GATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACC-AGATCCCCCCTACGTGCTGCCGATCCT
29090867 ACTG
130 ACTG
29090871 TCGTAACCTT
Statistics
Matches: 236, Mismatches: 47, Indels: 20
0.78 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 97 0.41
159 29 0.12
160 105 0.44
161 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCAGATCCCCCCTACGTGCTGCCGATCCTA
CTGCCACAACCCTCAGACCGATCCGATA
Found at i:29091664 original size:26 final size:26
Alignment explanation
Indices: 29091613--29091665 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29091603 GGCTCAAAAT
* *
29091613 CTTAGAATGGGAATGCACTTCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
29091639 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCATATG
29091665 C
1 C
29091666 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:29091826 original size:26 final size:26
Alignment explanation
Indices: 29091797--29091849 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29091787 CCGGTTTGAT
*
29091797 CTTAGGCAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
** *
29091823 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
29091849 C
1 C
29091850 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:29092387 original size:159 final size:160
Alignment explanation
Indices: 29091970--29092489 Score: 425
Period size: 159 Copynumber: 3.3 Consensus size: 160
29091960 GGTCCTGCTA
* * *
29091970 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCAC
* * * * * *
29092035 GGAAC-GAGCGTGCGGACGCTCAG-CAGACCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCC
66 GAAACAGAGCGTGCGGGCGCTCAGCCTG-CCGAAGAGGCAAAATGCGCAAGTTGGGGATCGGCCC
** ** **
29092098 ATTCCCCCCCTGTGTGCTGTCGATCTTGCTG
130 GGTCCCCCCCTACGTGCTGTCGATCCCGCTG
* * * ** *
29092129 CCACAACCCTCAGTCCAG-TCCGATCTTAGAC-TGGGAATGAACTCCATATGCATAAG-TCAACC
1 CCACAACCCTCGGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCT-AACC
* * * * * * * * * *
29092191 CAC-AAA-ATGAGCGTGCCGGCGTTGACCCTACCAAAGAGGCATAATGCGTAAGTTGAGAATCGG
63 CACGAAACA-GAGCGTGCGGGCGCTCAGCCTGCCGAAGAGGCAAAATGCGCAAGTTGGGGATCGG
** *
29092254 CCCGGTCCCCCTTTACGTGCTGTC-AGTCCCGTTG
127 CCCGGTCCCCCCCTACGTGCTGTCGA-TCCCGCTG
* * *
29092288 CCACAACCCTCGGTCTGGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCTAACCCAC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCAC
* * * *
29092353 GAAACAG-GCATGCGGGTGCTCAGCCTGCCGAAGAGGCAAAATGCGCATGCTGGGGATCGGCCCG
66 GAAACAGAGCGTGCGGGCGCTCAGCCTGCCGAAGAGGCAAAATGCGCAAGTTGGGGATCGGCCCG
* * * ***
29092417 GT-CCCCCCTGCGTGCGGCCGATCCTTTTG
131 GTCCCCCCCTACGTGCTGTCGATCCCGCTG
* * **
29092446 CCGCAACCCTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTC
1 CCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTC
29092490 TGTATGCTTA
Statistics
Matches: 277, Mismatches: 69, Indels: 31
0.73 0.18 0.08
Matches are distributed among these distances:
157 1 0.00
158 56 0.20
159 211 0.76
160 8 0.03
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (160 bp):
CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCAC
GAAACAGAGCGTGCGGGCGCTCAGCCTGCCGAAGAGGCAAAATGCGCAAGTTGGGGATCGGCCCG
GTCCCCCCCTACGTGCTGTCGATCCCGCTG
Found at i:29092499 original size:26 final size:26
Alignment explanation
Indices: 29092470--29092522 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29092460 CCGGTCTGAT
*
29092470 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29092496 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29092522 C
1 C
29092523 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29092810 original size:197 final size:197
Alignment explanation
Indices: 29092467--29092822 Score: 457
Period size: 197 Copynumber: 1.8 Consensus size: 197
29092457 GATCCGGTCT
** * * *
29092467 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** * *
29092532 CCCATGAAAGGAGTGTGCAGGCGCTCAACTGATCGAAGAGGCAGAATACGTAAGTCGGGGATCGA
66 CACACGAAACGAGCGTGCAGGCGCTCAACAGATCGAAGAGGCAGAATACACAAGTCAGGGACCGA
* *
29092597 CTGAGTCCCTCCCTACGTGCTGTCGATCCGACTGTTGGTCCTGCTACCGCAAACCTCGGTCCGAT
131 CCGAGTCCCACCCTACGTGCTGTCGATCCGACTGTTGGTCCTGCTACCGCAAACCTCGGTCCGAT
29092662 TC
196 TC
* *
29092664 GATCTTAGATTGGGAATGAAGTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
29092728 ACACACGAAACGAGCGTGCGGGCGCTCAACAGGTCGGAGAGGCAGAATGCACAAG-CTAGGGACC
65 ACACACGAAACGAGCGTGCAGGCGCTCAACAGATCGAAGAGGCAGAATACACAAGTC-AGGGACC
*
29092792 GACCCGA-TCCCACCCTACGTTCTGTCGATCC
129 GA-CCGAGTCCCACCCTACGTGCTGTCGATCC
29092823 TGCTACTGCA
Statistics
Matches: 133, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
196 1 0.01
197 128 0.96
198 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (197 bp):
GATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
CACACGAAACGAGCGTGCAGGCGCTCAACAGATCGAAGAGGCAGAATACACAAGTCAGGGACCGA
CCGAGTCCCACCCTACGTGCTGTCGATCCGACTGTTGGTCCTGCTACCGCAAACCTCGGTCCGAT
TC
Found at i:29092994 original size:159 final size:159
Alignment explanation
Indices: 29092692--29093068 Score: 379
Period size: 159 Copynumber: 2.4 Consensus size: 159
29092682 AAGTCCATAT
* *
29092692 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * **
29092757 CAGGTCGGAGAGGCAGAATGCACAAGCTAGGGACCGACCCGATCCCACCCTACGTTCTGTCGATC
66 CAGGTCGGAGAGGCAGAATGCACAACCGAGGGACCGACCCGATCCCACCCTACGTGCTACCGATC
* ** *
29092822 CTGCTACTGCAACCCTCGA-TCCGG-TCCGA
131 CCGCTACCACAACCC-CCATTCCGGCT-CGA
* * * ** *
29092851 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * * *
29092915 GCCGGTCGGAGAGGCATAATGCGTA-AACCGA-GGATCGGCTCGATCCCTCTCTATGTGCTACCG
65 ACAGGTCGGAGAGGCAGAATGC--ACAACCGAGGGACCGACCCGATCCCACCCTACGTGCTACCG
* *
29092978 ATCCCGCTGCCACAACCCCCATTCCGGCTGGA
128 ATCCCGCTACCACAACCCCCATTCCGGCTCGA
* * *
29093010 GCTTAGACATGGAATGAACTCCCG-ATCCCTAAGCCAACCCACGAAATGGGCGTGCGGGC
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
29093069 GCTCCGTCGG
Statistics
Matches: 175, Mismatches: 36, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
158 3 0.02
159 162 0.93
160 9 0.05
161 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CAGGTCGGAGAGGCAGAATGCACAACCGAGGGACCGACCCGATCCCACCCTACGTGCTACCGATC
CCGCTACCACAACCCCCATTCCGGCTCGA
Found at i:29093931 original size:26 final size:26
Alignment explanation
Indices: 29093893--29093942 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29093883 GGCTCAAACT
29093893 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
29093919 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATAAACTCCGTA
29093943 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29094483 original size:26 final size:26
Alignment explanation
Indices: 29094445--29094497 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29094435 CTGATCTGAT
29094445 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
29094471 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTATATG
29094497 C
1 C
29094498 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:29094991 original size:26 final size:26
Alignment explanation
Indices: 29094947--29094999 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29094937 CTGGTCTGAT
*
29094947 CTTAGACTGGTAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
29094973 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29094999 C
1 C
29095000 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29095584 original size:697 final size:684
Alignment explanation
Indices: 29094618--29095931 Score: 1627
Period size: 697 Copynumber: 1.9 Consensus size: 684
29094608 ACAATGCTTA
* * * * * *
29094618 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCATGGAATGAACATT
1 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATACATAAGTCAACCCATGAAACGAACATG
* ** ** *
29094683 CGAGCACTGCGCCGGCTTAAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCG
66 CGAGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCAGAGGATCGACCCAGTCCCCCTCTGCG
* * *
29094748 TACTGCCGGTCCCGCTGCCACAGCCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTA
131 TACTGCCGGTCCCGCTACCACAACCCTCAGTCTGGCTAGGGCTTACACATGGAATGAACTCCCTA
* * * * * * *
29094813 TGCCTAAGGCAACCCACAAAACGGGCGTGCGGGCGCTCAGCTAGCCCGAGAGGCATAATGCACAA
196 TGCCTAAGCCAACCCACAAAACGGGCATCCGGGCGCTCACCGAGCCAGAGAGGCAGAATGCACAA
* ** *
29094878 TCTGGGGATCGACTCGGTCCCCCCTGCATGCTACCGATCCTGCTG-TCACAACCCTCGGTCTGG-
261 TCTGGGGATCGACCCGGTCCCCCCAACATGCTACCGATCCTACTGCT-ACAACCCTCGGTCTGGT
*
29094941 TCTGATCTTAGACTGGTAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
325 TC-GATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
29095006 CAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGAGGCTGGCTGGAGAGGCATAATGT
389 CAACCCACGAAACAAGCATGCGGGCGCTCAG-C---C---GA---T--C-GGAGAGGCATAATGT
* * * * ** *
29095071 GCAAGTC-GAGGATCAGCTCGATCCCCCTCTACGTGTTGTCGATCCCGCTGTCGGTCCTGCTATC
441 GCAAGCCAG-GGATCAGCCCGATCCCCCTCTACGTGCTATCGATCCCGCTACCGGTCCTGCTACC
* * *
29095135 ACAACCCTC-GATCCAGCTGGGGCATAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCACA
505 ACAACCCTCAG-TCCAGCTCGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
** * *
29095199 AAACGAGCGTGTGGGCACTCAGCCAACTGGAGAGGCAGAATGCACAAGCTAGGGATAGGCCCGAT
569 AAACGAGCGTGCAGGCACTCAACCAACCGGAGAGGCAGAATGCACAAGCTAGGGATAGGCCCGAT
29095264 CCCCCCTACTTGCTATCGATCTTGCTGCTGGTCCTACTGTCGCAACCCTCG
634 CCCCCCTACTTGCTATCGATCTTGCTGCTGGTCCTACTGTCGCAACCCTCG
* * * *
29095315 GTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTG
1 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATACATAAGTCAACCCATGAAACGAACATG
* ** * * * *
29095380 CGGGCGTTGAGCCAACCGAAGAGGTATAATGCGCAAGCTAG-GGATCGGCCCGGTTCCCCTCTGC
66 CGAGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGC-AGAGGATCGACCCAGTCCCCCTCTGC
* * * * *
29095444 GTGCTGCCGGTCCTGCTACCACAACCCTCGATTC-GGTTGGGGCTTACACATGGAATGAACTCCC
130 GTACTGCCGGTCCCGCTACCACAACCCTC-AGTCTGGCTAGGGCTTACACATGGAATGAACTCCC
* * *
29095508 TATGCCTAAGCCAACCCACAAAACGGGCATCCGGGTGCTCAACCGA-TCAGAGAGGCAGAATGCG
194 TATGCCTAAGCCAACCCACAAAACGGGCATCCGGGCGCTC-ACCGAGCCAGAGAGGCAGAATGCA
* * * *
29095572 CAAGTC-GGGGATCGACCCGGTCCCCCCAACGTGCTATCGATCCTATTGCTGCAACCCTCGGTCT
258 CAA-TCTGGGGATCGACCCGGTCCCCCCAACATGCTACCGATCCTACTGCTACAACCCTCGGTCT
* * *
29095636 GGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
322 GGTTCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* ** * *
29095701 GTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGTGTAAGCCAGGG
387 GTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAATGTGCAAGCCAGGG
* * *
29095766 ATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCCGCTACCGGTCTTGCTACCACAACCTTCAGT
452 ATCAGCCCGATCCCCCTCTACGTGCTATCGATCCCGCTACCGGTCCTGCTACCACAACCCTCAGT
* * * * *
29095831 CCGGCTCGGGCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGGGCGTGCA
517 CCAGCTCGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCA
** * *
29095896 GGCACTCAACCGGCCGGAGAGGTAGAATGCGCAAGC
582 GGCACTCAACCAACCGGAGAGGCAGAATGCACAAGC
29095932 CGAAGATCGG
Statistics
Matches: 525, Mismatches: 84, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
684 161 0.31
685 3 0.01
687 1 0.00
690 2 0.00
693 1 0.00
696 1 0.00
697 344 0.66
698 12 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (684 bp):
GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATACATAAGTCAACCCATGAAACGAACATG
CGAGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCAGAGGATCGACCCAGTCCCCCTCTGCG
TACTGCCGGTCCCGCTACCACAACCCTCAGTCTGGCTAGGGCTTACACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACAAAACGGGCATCCGGGCGCTCACCGAGCCAGAGAGGCAGAATGCACAA
TCTGGGGATCGACCCGGTCCCCCCAACATGCTACCGATCCTACTGCTACAACCCTCGGTCTGGTT
CGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAATGTGCAAGCCAGGGATCA
GCCCGATCCCCCTCTACGTGCTATCGATCCCGCTACCGGTCCTGCTACCACAACCCTCAGTCCAG
CTCGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCA
CTCAACCAACCGGAGAGGCAGAATGCACAAGCTAGGGATAGGCCCGATCCCCCCTACTTGCTATC
GATCTTGCTGCTGGTCCTACTGTCGCAACCCTCG
Found at i:29095673 original size:26 final size:26
Alignment explanation
Indices: 29095644--29095696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29095634 CTGGTTCGAT
* *
29095644 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29095670 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29095696 C
1 C
29095697 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29095985 original size:355 final size:343
Alignment explanation
Indices: 29095327--29096089 Score: 889
Period size: 355 Copynumber: 2.2 Consensus size: 343
29095317 CCGGTCCGAT
* * * * * *
29095327 CTTAGATTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
29095392 CAACCGAAGAGGTATAATGCGCAAGCTAGGGATCGGCCCGGTTCCCCTCTGCGTGCTGCCGGTCC
66 CAACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGGTCC
* * *
29095457 TGCTACCACAACCCTCGATTCGGTTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
131 TGCTACCACAACCCTCGATCCGGCTCGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** * * **
29095522 CCCACAAAACGGGCATCCGGGTGCTCAACCGATCAGAGAGGCAGAATGCGCAAGTCGGGGATCGA
196 CCCACAAAACGGGCATCCAGGCACTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGAAGATCGA
* * * * * *
29095587 CCCGGTCCCCCCAACGTGCTATCGATCCTATTGCTGCAACCCTCGGTCTGGTTCGATCTTAGATT
261 CCCGGTCCCCCCAACGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* **
29095652 GGGAATGAACTCTGTATG
326 AGGAATGAACTCCATATG
*
29095670 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
29095735 CGATCGGAGAGGCATAATGTGTAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCC
66 CAACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTG----C--T--
* * *
29095800 CGCTACCGGTCTTGCTACCACAACCTTC-AGTCCGGCTCGGGCTTAGACATGGAATGAACTCCCT
123 -G---CCGGTCCTGCTACCACAACCCTCGA-TCCGGCTCGGGCTTACACATGGAATGAACTCCCT
* * * * * * *
29095864 ATGCCTATGCCAACCCACGAAACGGGCGTGCAGGCACTCAACCGGCCGGAGAGGTAGAATGCGCA
183 ATGCCTAAGCCAACCCACAAAACGGGCATCCAGGCACTCAACCGACCAGAGAGGCAGAATGCGCA
* * ** * * *
29095929 AGCCGAAGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCTGGT
248 AGCCGAAGATCGACCCGGTCCCCCCAACGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGT
29095994 CCGATCTTAGACTAGGAATGAACTCCATATG
313 CCGATCTTAGACTAGGAATGAACTCCATATG
* * * *
29096025 CTCAGACTGGGGACGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
29096090 TGACCAGAGA
Statistics
Matches: 349, Mismatches: 58, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
343 103 0.30
347 1 0.00
349 1 0.00
352 1 0.00
354 1 0.00
355 242 0.69
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CAACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGGTCC
TGCTACCACAACCCTCGATCCGGCTCGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACGGGCATCCAGGCACTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGAAGATCGA
CCCGGTCCCCCCAACGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACT
AGGAATGAACTCCATATG
Found at i:29096760 original size:26 final size:26
Alignment explanation
Indices: 29096722--29096774 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29096712 GGCTCAAAAT
29096722 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29096748 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29096774 C
1 C
29096775 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29097226 original size:157 final size:157
Alignment explanation
Indices: 29096807--29097248 Score: 424
Period size: 157 Copynumber: 2.8 Consensus size: 157
29096797 TGTGCGGGTG
* * * ** * *
29096807 CTCAGCCAGTCGAAGAGGTAGAATTCGCAAGCCGGGGATAGGCCCGGTCCCCCCCTATGTGCTGT
1 CTCAGCCAGCCGAAGAGGCAGAATACGCAAGCCAAGGATCGGCCCGGT-CCCCCCTACGTGCTGT
* * * *
29096872 CGATCCTACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATT
65 CGATCCTACTGCCGCAACCCTCGGT-CTAGCTGACCTTAGACTGGGAATGAACTCCGTATGCATA
* *
29096937 AGTCAACCCACAAAATGAAAGTACGGGCG
129 AGTCAACCCACAAAACGAAAGTACGGGCA
* * * * *
29096966 TTGAGCCAGCTGAAGAGGCATAATACGCAAGCCAAGGATCGACCCGGTCCCCCTCTACGTGCTGT
1 CTCAGCCAGCCGAAGAGGCAGAATACGCAAGCCAAGGATCGGCCCGGTCCCCC-CTACGTGCTGT
* * * * * ** ** * * *
29097031 CGGTCCCACT-CCACAACCCTCAGT-TCAGTTGGGGCTTAGACACGGAATGAGCTCCCTATGCCT
65 CGATCCTACTGCCGCAACCCTCGGTCT-AGCT-GACCTTAGACTGGGAATGAACTCCGTATGCAT
* ***
29097094 AAG-CTAACCC-CGAAACGGGCGTACGGGCA
128 AAGTC-AACCCACAAAACGAAAGTACGGGCA
* * * * * *
29097123 CTCAGTCGGCCGAAGAGGCAGAATGCGCAGGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTGTC
1 CTCAGCCAGCCGAAGAGGCAGAATACGCAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGTC
*
29097188 GATCCTACTGCCGCAACCTTCGGTCTAGCCTGACCTTAGACTGGGAATGAACTCCGTATGC
66 GATCCTACTGCCGCAACCCTCGGTCTAG-CTGACCTTAGACTGGGAATGAACTCCGTATGC
29097249 TTAGACTGGG
Statistics
Matches: 220, Mismatches: 56, Indels: 16
0.75 0.19 0.05
Matches are distributed among these distances:
156 18 0.08
157 96 0.44
158 51 0.23
159 55 0.25
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (157 bp):
CTCAGCCAGCCGAAGAGGCAGAATACGCAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGTC
GATCCTACTGCCGCAACCCTCGGTCTAGCTGACCTTAGACTGGGAATGAACTCCGTATGCATAAG
TCAACCCACAAAACGAAAGTACGGGCA
Found at i:29097258 original size:26 final size:26
Alignment explanation
Indices: 29097222--29097274 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29097212 CTAGCCTGAC
*
29097222 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
29097248 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
29097274 C
1 C
29097275 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:29098475 original size:159 final size:159
Alignment explanation
Indices: 29098115--29098476 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 159
29098105 CCGTATGCTT
* *
29098115 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGGACGGGTGCTCAACCGG
1 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGGACGGGTGCTCAACCAG
* * ** **
29098180 CCGGAGAGGCAGAATACGTAAGCCGGGGATCGTCCCAGTCCCCCCCAGCGTGCTGTTGATCCTGC
66 CCGAAGAGGCAGAATACGTAAGCCGGGGACCAACCCAGTCCCCCCCAGCGTGCTGCAGATCCTGC
* *** * *
29098245 TACCACAACCCTCGATCTGGTCTGATCTT
131 TACCACAACCATCGATCTCAACTGAGCTC
* * * * * * *
29098274 AGAC-TAGGAATGAACTTCATATGCATAAGTCAACCCATGAAATGAGCGTG-GGGGTGCTTAGCC
1 AGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCG-GACGGGTGCTCAACC
* * * * *
29098337 AGCCGAAGAGGCATAATGCGTAAGCCGGGGACCAACCCGGTCCCCCTCTGCGTGCTGCCAG-TCC
64 AGCCGAAGAGGCAGAATACGTAAGCCGGGGACCAACCCAGTCCCCCCCAGCGTGCTG-CAGATCC
*
29098401 TGC-AGCCACAACCATC-AGTC-CAACTGGGGCTC
128 TGCTA-CCACAACCATCGA-TCTCAACT-GAGCTC
* *
29098433 AGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
1 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATG
29098477 GACGTGCGTG
Statistics
Matches: 163, Mismatches: 33, Indels: 14
0.78 0.16 0.07
Matches are distributed among these distances:
158 5 0.03
159 155 0.95
160 3 0.02
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (159 bp):
AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGGACGGGTGCTCAACCAG
CCGAAGAGGCAGAATACGTAAGCCGGGGACCAACCCAGTCCCCCCCAGCGTGCTGCAGATCCTGC
TACCACAACCATCGATCTCAACTGAGCTC
Found at i:29098972 original size:26 final size:26
Alignment explanation
Indices: 29098932--29098981 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29098922 AACCCTCGAT
29098932 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
29098958 CTTAGACATGG-AATGAACTCCGTA
1 CTTAGAC-TGGCAATGAACTCCGTA
29098982 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:29098996 original size:174 final size:172
Alignment explanation
Indices: 29098783--29099102 Score: 437
Period size: 174 Copynumber: 1.8 Consensus size: 172
29098773 TCCGGCTGGG
* * *
29098783 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATACAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAG
* *
29098848 CCAGCCAA-AGAGGCAGAATGCGCAAGCTGAGGATCGACC-CGATCCCCCCTGCGTGCTGTCGAT
66 CC-G--AAGAGAGGCAGAATGCACAAGCCGAGGATCGACCTCG-TCCCCCCTGCGTGCTGTCGAT
*
29098911 CCTGCTGCTGCAACCCTCGATCTTAGACTGGCAATGAACTCCGTAT
127 CCTACTGCTGCAACCCTCGATCTTAGACTGGCAATGAACTCCGTAT
* * * * *
29098957 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAG
* * * *
29099022 CCGAATGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTTGTCCCCTCTGCGTGCTGTCGATCC
66 CCGAA--GAGAGGCAGAATGCACAAGCCGAGGATCGACCTCGTCCCCCCTGCGTGCTGTCGATCC
29099087 TACTGCTGCAACCCTC
129 TACTGCTGCAACCCTC
29099103 AGTCTGATTC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
171 2 0.02
173 1 0.01
174 123 0.97
175 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (172 bp):
GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAG
CCGAAGAGAGGCAGAATGCACAAGCCGAGGATCGACCTCGTCCCCCCTGCGTGCTGTCGATCCTA
CTGCTGCAACCCTCGATCTTAGACTGGCAATGAACTCCGTAT
Found at i:29099351 original size:159 final size:156
Alignment explanation
Indices: 29098957--29099457 Score: 484
Period size: 158 Copynumber: 3.2 Consensus size: 156
29098947 AACTCCGTAT
* * *
29098957 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTA-TCCTAAGCGAA-CCATGAAACGAGCGTGCGGGCGCTAAG
** *
29099022 CCGAATGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTTGTCCCCTCTGCGTGCTGTCGATCC
64 CCGAATGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCC
* ** * *
29099087 TACTGCTGCAACCCTCAGTCTGATTCAA
129 TGCTGCCACAACCCTCGGTCCGATTCAA
* * * * *
29099115 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCGAACCATGAAACGAGTGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTAT-CCTAAG-CGAACCATGAAACGAGCGTGCGGGCGCTAA
* ** * * * *
29099179 GCTGACCGAAGAGGCATAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGAT
63 GCCGAATGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTGCCGAT
* ***
29099244 CCCGCTGCCACAACCCTCGGTCCGATTGGG
127 CCTGCTGCCACAACCCTCGGTCCGATTCAA
* * * * *
29099274 GCTTAGACATGGAATGAACTCCCTATCCATAAGCGAAGCCACGAAATGGGCGTGCAGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATCC-TAAGCGAA-CCATGAAACGAGCGTGCGGGCGCTAAG
** * * * * * *
29099339 CCGGTTGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCGCTGCGTGTTGCTGATCC
64 CCGAATGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCC
** * * **
29099404 TGCAACCACAACCCTCGGTCTGGTTTGA
129 TGCTGCCACAACCCTCGGTCCGATTCAA
*
29099432 TCTTAGAC-TGGGAATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
29099458 GCTTAGACTG
Statistics
Matches: 276, Mismatches: 59, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 153 0.55
159 120 0.43
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATCCTAAGCGAACCATGAAACGAGCGTGCGGGCGCTAAGCC
GAATGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCCTG
CTGCCACAACCCTCGGTCCGATTCAA
Found at i:29100581 original size:159 final size:158
Alignment explanation
Indices: 29100180--29100596 Score: 416
Period size: 159 Copynumber: 2.6 Consensus size: 158
29100170 ACTCCATATC
*
29100180 CTTAGACATGGAATGAACTCCGTATGGC-TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTAT-GCATAAGCCAACCCATGAAACGAGCGCGCGGGCGCTCAG
** ** * * * *
29100244 CCCGCCGGAGAGGCAGAAT-CTACAAGCCGAGGATCGGCCCGATCCCCTCTGTATACTGTAAATC
65 CCAACTAGAGAGGCAGAATGC-GCAAGCCGGGGATCGGCCCGATCCCCTCTGTATACAGCAAATC
** * * *
29100308 CTGCTACCGCAACCCTCAATCCAGTCTTAT
129 CCACTACCACAACCCTCAATCCAGGCTTAG
* * *
29100338 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTC-CGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCG-CGCGGGCGCTCA
* * * * ** * * **
29100401 GCCGA-TCGAACAGGCATAATGCGCTGGCCGGGGATCGGCCC-AGTCCCCCTCTGTGTGCAGCCG
64 GCCAACTAG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-T-CCCCTCTGTATACAGCAA
* * * *
29100464 GTCCCACTGCCACAACCCTCAGTCC-GGCTGTGG
126 ATCCCACTACCACAACCCTCAATCCAGGCT-TAG
* *
29100497 CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGGGCGCGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGCGCGGGCGCTCAGC
29100562 CAACTAGAGAGGCAGAATGCGCAAGCCGGGGATCG
66 CAACTAGAGAGGCAGAATGCGCAAGCCGGGGATCG
29100597 ACCTGTTCCC
Statistics
Matches: 208, Mismatches: 40, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
157 5 0.02
158 85 0.41
159 115 0.55
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGCGCGGGCGCTCAGC
CAACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGTATACAGCAAATCCC
ACTACCACAACCCTCAATCCAGGCTTAG
Found at i:29100694 original size:26 final size:26
Alignment explanation
Indices: 29100655--29100707 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29100645 CTGGTCTGAT
29100655 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
29100681 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGACT-GTGAATGAACTCCGTATG
29100707 C
1 C
29100708 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:29101723 original size:159 final size:155
Alignment explanation
Indices: 29101268--29101823 Score: 494
Period size: 158 Copynumber: 3.5 Consensus size: 155
29101258 AGCGTTGAGT
* ** * *
29101268 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCTAGTCCCCCTTTGCGTGCTGTCGGTCT
1 CGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCTC-TTGCGTGCTGTC-GTCC
* * *
29101333 CGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
64 CGCTGCCACAACCC-TCGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* *
29101398 -CCACGAAACGGCCGTGCGGGCA-TTCATC
128 CCCACGAAACGG-CGTGCGGG-AGCTCAGC
* * * *
29101426 CGATCGAAGAGGCAGAATGCGCAAGTCGGGGATC-AGCCCGGTCCCTCCTGCATGCTGTCGATCC
1 CGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGA-CCCGGTCCCTCTTGCGTGCTGTCG-TCC
* * * * ** * * ** *
29101490 TGCTGTCACAACCCTCGGTCTGG-TCCGATCTTAGAC-TACGAATGAAC-CTCGTATGCAGAAGT
64 CGCTGCCACAACCCTCGTTC-GGCT-GGGGCTTAGACAT-GGAATGAACTC-CCTATGCCTAAGC
* * *
29101552 CAACCCACGAAACGAGCGTACGGGTGCTGAGC
125 CAACCCACGAAACG-GCGTGCGGGAGCTCAGC
* * * *
29101584 TGGTCGAAGAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCTCTTCGCGTGCTGCCAGTCC
1 CGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCTCTT-GCGTGCTGTC-GTCC
*
29101649 CGCTGCCATAACCCTCCGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
64 CGCTGCCACAACCCT-CGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
29101714 CCCACGAAACGGGCGTGCGGGAGCTCAGC
128 CCCACGAAAC-GGCGTGCGGGAGCTCAGC
* * ** * * * * * * * *
29101743 CGGTCGGAGAGGCAGAATATGAAAGTTGGGGATTGGCCCGATCCCTCCTGCGTGCTGTTGATCCT
1 CGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCTCTTGCGTGCTGTCG-TCCC
**
29101808 GCTGCCGTAACCCTCG
65 GCTGCCACAACCCTCG
29101824 GTCTAGTTCG
Statistics
Matches: 312, Mismatches: 68, Indels: 37
0.75 0.16 0.09
Matches are distributed among these distances:
156 7 0.02
157 57 0.18
158 124 0.40
159 115 0.37
160 9 0.03
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.20
Consensus pattern (155 bp):
CGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCTCTTGCGTGCTGTCGTCCCG
CTGCCACAACCCTCGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGGCGTGCGGGAGCTCAGC
Found at i:29101862 original size:158 final size:158
Alignment explanation
Indices: 29101362--29101855 Score: 475
Period size: 159 Copynumber: 3.1 Consensus size: 158
29101352 CCGGCTGGGG
* * *
29101362 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCACGAAACGGCCGTGCGGGCA-TTCAT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG-AGCTCAG
* ** * * *
29101425 CCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCTCCTGCATGCTGTCGATCC
65 CCGGTCGAAGAGGCAGAATATGAAAGTCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCC
* * *
29101490 TGCTGTCACAACCCTCGGTCTGGTCCGAT
130 TGCTGCCATAACCCTCGGTCTGGTTCGAT
* * ** * * * * *
29101519 CTTAGAC-TACGAATGAAC-CTCGTATGCAGAAGTCAACCCACGAAACGAGCGTACGGGTGCTGA
1 CTTAGACAT-GGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCA
* * * * * *
29101582 GCTGGTCGAAGAGGCA-TA-ATGCACAAGCCGGGGATCGACCCGGTCCCTCTTCGCGTGCTG-CC
64 GCCGGTCGAAGAGGCAGAATATG-A-AAGTCGGGGATCGGCCCGGTCCCTCCT-GCGTGCTGTCG
* * * * **
29101644 AGTCCCGCTGCCATAACCCTCCGT-TCGGCTGGGG
126 A-TCCTGCTGCCATAACCCTCGGTCT-GGTTCGAT
29101678 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGC
* * * * *
29101743 CGGTCGGAGAGGCAGAATATGAAAGTTGGGGATTGGCCCGATCCCTCCTGCGTGCTGTTGATCCT
66 CGGTCGAAGAGGCAGAATATGAAAGTCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCT
* *
29101808 GCTGCCGTAACCCTCGGTCTAGTTCGAT
131 GCTGCCATAACCCTCGGTCTGGTTCGAT
*
29101836 CTTAGAC-TGGGAATTAACTC
1 CTTAGACAT-GGAATGAACTC
29101856 TATATGCTTA
Statistics
Matches: 259, Mismatches: 62, Indels: 31
0.74 0.18 0.09
Matches are distributed among these distances:
156 3 0.01
157 29 0.11
158 105 0.41
159 115 0.44
160 4 0.02
161 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGC
CGGTCGAAGAGGCAGAATATGAAAGTCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCT
GCTGCCATAACCCTCGGTCTGGTTCGAT
Found at i:29101887 original size:26 final size:26
Alignment explanation
Indices: 29101836--29101888 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29101826 CTAGTTCGAT
* *
29101836 CTTAGACTGGGAATTAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29101862 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
29101888 C
1 C
29101889 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29102760 original size:158 final size:159
Alignment explanation
Indices: 29102471--29102835 Score: 425
Period size: 158 Copynumber: 2.3 Consensus size: 159
29102461 TGAGGCACAA
* * * * * * *
29102471 GTCGGAGAGGCATAATGCGCGAGCTGAGGATCTGTCCGGTCCCCCTCTGCGTGCTGCCGGTCCCA
1 GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCTGGCAGGTCCCCCTCTGCGTGCTACCGATCCCA
** *
29102536 CTGCCACAACCCTCAGTCTGGCTTGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCGAACC
66 CTGCCACAACCCTCAGTCTGGCCGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACC
* *
29102601 CATGAAACGGGCGTGTAG-GCGCTCAACCG
131 CATAAAACGAGCGTG-AGAGCGCTCAACCG
* * *
29102630 GTCGGAGAGGCAGAATGCGCAAGCCGAGGAT-TGGCTAGGTCCCTC-CTGCGTGCTATCGATCCT
1 GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCTGGC-AGGTCCCCCTCTGCGTGCTACCGATCCC
* * * **
29102693 GCTGCCACAACCCTCGGTCTGGCCGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
65 ACTGCCACAACCCTCAGTCTGGCCGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAAC
* *
29102758 CCATAAAACGAGCGTGCGAGCGCTCAGCCG
130 CCATAAAACGAGCGTGAGAGCGCTCAACCG
** * *
29102788 ACCGGAGAGGCAGAATGCACAAGCCGGGGATC-GGTCCA-GTCCCCCTCT
1 GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCTGG--CAGGTCCCCCTCT
29102836 TTGTGCTGTC
Statistics
Matches: 173, Mismatches: 27, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
157 1 0.01
158 133 0.77
159 38 0.22
160 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.18
Consensus pattern (159 bp):
GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCTGGCAGGTCCCCCTCTGCGTGCTACCGATCCCA
CTGCCACAACCCTCAGTCTGGCCGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACC
CATAAAACGAGCGTGAGAGCGCTCAACCG
Found at i:29102931 original size:26 final size:26
Alignment explanation
Indices: 29102891--29102942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29102881 TTCAATCCTA
29102891 TCTTAGACTGTGAATGAACTCCGTAT
1 TCTTAGACTGTGAATGAACTCCGTAT
29102917 TCTTAGACATG-GAATGAACTCCGTAT
1 TCTTAGAC-TGTGAATGAACTCCGTAT
29102943 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGTGAATGAACTCCGTAT
Found at i:29103272 original size:159 final size:159
Alignment explanation
Indices: 29102918--29103419 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 159
29102908 ACTCCGTATT
* * *
29102918 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGTTCAGC
* ** * * * * * *
29102983 AGACCAGAGAGGCAGAATACGTAAGCCAGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCT
66 CGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCC
** * ** * *
29103047 TGCTGCTGCAACCCACGGTCCGATCCGAT
131 CACTACCACAACCCACGATCCGATCCGAG
* * *
29103076 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGTTCAG
* * *
29103140 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCC-AGTCCCCCTCTGCGTGCTGCCAGA
65 CCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGA-TCCCCCTCTGCGTGCTGCC-GA
* * * * *
29103204 -CCCACTACCACAACCCTCGATCTG-GCTGGGG
128 TCCCACTACCACAACCCACGATCCGATC-CGAG
* * * * *
29103235 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGTTCAGC
* *
29103300 CGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCTCT-TGCGTGCTGTCGATCC
66 CGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCC
** * * * * *
29103364 TGCTACCGCAACCCTCGGTCCAATCCGAT
131 CACTACCACAACCCACGATCCGATCCGAG
29103393 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29103420 TTAGACTGGA
Statistics
Matches: 281, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 148 0.53
159 124 0.44
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGTTCAGC
CGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCC
CACTACCACAACCCACGATCCGATCCGAG
Found at i:29103399 original size:672 final size:677
Alignment explanation
Indices: 29102031--29103419 Score: 1699
Period size: 672 Copynumber: 2.0 Consensus size: 677
29102021 TCCGGCTGTG
* * * *
29102031 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAACGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAACGTACGAGCGCTCAG
* *
29102096 CCAACCGGAGAGGCAGAATACACAAGCCGGGGATCGGTTCGGTCCCCCCTGCGCGCTGTCGATCC
66 CCAACCGGAGAGGCAGAATACACAAGCCGGGGATCGGTCCAGTCCCCCCTGCGCGCTGTCGATCC
* * **
29102161 TATTGCTGGTCCTACCGCCCAACCCTCGGTCTGGTCCGATCATAGACTGGGAATGAACTCCGTAT
131 TACTGCTGGTCCTACCGCCCAACCCTCAGTCTAATCCGATCATAGACTGGGAATGAACTCCGTAT
* * *
29102226 GCTTAGACACGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAA
196 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCTCTCAA
* * * * * * ** *
29102291 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCTGATCCCCCCCTGTGTGCTGTTGATC
261 CAGACCAGAGAGGCAGAATACACAAGCCAGGGATCAGCCCGATCCCCCCCTACGTGCTGTCGATC
** * * * *
29102356 CTACTGCTACAACCTTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
326 CTACTGCTACAACCCACGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
29102421 ACCCACGAAACGAGCGTGCGGGCGCTGAGGCATAATGCGTTGAGGCACAAGTCGGAGAGGCATAA
391 ACCCACGAAACGAGCGT----G-GC--AGG----A-GCGTTGAGGCACAAGTCGGAGAGGCATAA
* * * * * * *
29102486 TGCGCGAGCTGAGGATCTGTCCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTCA
444 TGCGCAAGCCGAGGATCTGCCCAGTCCCCCTCTGCGTGCTGCCAGACCCACTACCACAACCCTCA
* * * *
29102551 GTCTGGCTTGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCGAACCCATGAAACGGGCGTG
509 GTCTGGCTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCAACGAAACGGGCGTG
* * * * *
29102616 TAGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCTAGGTCCCTCCTGCGT
574 CAGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCAGATCCCTCCTGCGT
* ** *
29102681 GCTATCGATCCTGCTGCCACAACCCTCGGTCTGGCCGGG
639 GCTATCGATCCTGCTACCACAACCCTCGGTCAAGCCGGA
* *
29102720 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAACGTACGAGCGCTCAG
* * ** *
29102785 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCAGTCCCCCTCTTTGTGCTGTCGATC
66 CCAACCGGAGAGGCAGAATACACAAGCCGGGGATCGGTCCAGTCCCCC-CTGCGCGCTGTCGATC
* * * * * * *
29102850 CTGCTGCTGGTCCTACTGCCGCAACCTTCAAT-TCAATCCTATCTTAGACTGTGAATGAACTCCG
130 CTACTGCTGGTCCTACCGCC-CAACCCTCAGTCT-AATCCGATCATAGACTGGGAATGAACTCCG
* *
29102914 TATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGT-
193 TATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGC-TC
* ** *
29102978 TCAGCAGACCAGAGAGGCAGAATACGTAAGCCAGGGATCGGCCCGAT-CCCCCCTACGTGCTGTC
257 TCAACAGACCAGAGAGGCAGAATACACAAGCCAGGGATCAGCCCGATCCCCCCCTACGTGCTGTC
* * * *
29103042 GATCTTGCTGCTGCAACCCACGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
322 GATCCTACTGCTACAACCCACGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
29103107 GTCAACCTACGAAACGAGCGT-GC-GG-GCGTTGA-GC-C-GGTCGGAGAGGCATAATGCGCAAG
387 GTCAACCCACGAAACGAGCGTGGCAGGAGCGTTGAGGCACAAGTCGGAGAGGCATAATGCGCAAG
*
29103166 CCGGGGATC-GACCCAGTCCCCCTCTGCGTGCTGCCAGACCCACTACCACAACCCTC-GATCTGG
452 CCGAGGATCTG-CCCAGTCCCCCTCTGCGTGCTGCCAGACCCACTACCACAACCCTCAG-TCTGG
* * *
29103229 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGGCGTGCGGGCG
515 CTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCAACGAAACGGGCGTGCAGGCG
** * * * *
29103294 CTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCC-AGGGATCGACCCGATCCCTCTTGCGTGCTGT
580 CTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCAGATCCCTCCTGCGTGCTAT
* *
29103358 CGATCCTGCTACCGCAACCCTCGGTCCAATCC-GA
644 CGATCCTGCTACCACAACCCTCGGT-CAAGCCGGA
* *
29103392 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
29103420 TTAGACTGGA
Statistics
Matches: 603, Mismatches: 88, Indels: 35
0.83 0.12 0.05
Matches are distributed among these distances:
671 4 0.01
672 231 0.38
673 4 0.01
674 2 0.00
675 7 0.01
681 2 0.00
684 2 0.00
689 103 0.17
690 120 0.20
691 127 0.21
692 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (677 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAACGTACGAGCGCTCAG
CCAACCGGAGAGGCAGAATACACAAGCCGGGGATCGGTCCAGTCCCCCCTGCGCGCTGTCGATCC
TACTGCTGGTCCTACCGCCCAACCCTCAGTCTAATCCGATCATAGACTGGGAATGAACTCCGTAT
GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCTCTCAA
CAGACCAGAGAGGCAGAATACACAAGCCAGGGATCAGCCCGATCCCCCCCTACGTGCTGTCGATC
CTACTGCTACAACCCACGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGGCAGGAGCGTTGAGGCACAAGTCGGAGAGGCATAATGCGCAAGCCGA
GGATCTGCCCAGTCCCCCTCTGCGTGCTGCCAGACCCACTACCACAACCCTCAGTCTGGCTGGGG
CTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCAACGAAACGGGCGTGCAGGCGCTCAAC
CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCAGATCCCTCCTGCGTGCTATCGATCCT
GCTACCACAACCCTCGGTCAAGCCGGA
Found at i:29103422 original size:26 final size:26
Alignment explanation
Indices: 29103393--29103445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29103383 CCAATCCGAT
29103393 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
*
29103419 CTTAGACTGGAGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
29103445 C
1 C
29103446 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:29104155 original size:26 final size:26
Alignment explanation
Indices: 29104117--29104167 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29104107 GGCTTAAAAT
*
29104117 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
29104143 CTTAGACAT-GGAATGAACTATGTAT
1 CTTAGAC-TGGGAATGAACTATGTAT
29104168 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:29104727 original size:317 final size:315
Alignment explanation
Indices: 29104142--29105297 Score: 967
Period size: 317 Copynumber: 3.6 Consensus size: 315
29104132 AACTCTGTAT
*** * * * * * *
29104142 GCTTAGACATGGAATGAACTATGTATACCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTAAG
* * ** * * * * *
29104207 TCGGCCGGAGAGGCAGATTGCACAAGTCGGGGATTAGCCCGAT-CCCTCCTGTGTGCTG-TCAAT
66 CCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCTGGTACCC-CCTGCGTGCTGCT-GAT
* * * * * * * *
29104270 CCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGATCTTCGTATGCGTAG-GT
129 CCTACTG-CGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * ** * * * * *
29104334 CAACCCATGAATCGAGCG-TACAGG-CGTTGAGTCGATC-GAAGAAGCATAATGCGCAAGCCGAG
193 CAACCCATG-A-CGAGTGCT-C-GGAAGGAGGGCCG-GCAGAAGAGGCATAATGCGCAAGCCGGG
* *
29104396 GATCGACTCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGG
253 GATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
* * *
29104459 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTAAG
* * * *** * * *
29104524 TCGGCCGGAGAGGAAGAATGTGCAGGTCAAAGATCGGCTTGGTACCCCCTACGTGCTGCTGATCC
66 CCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCTGGTACCCCCTGCGTGCTGCTGATCC
* * * *
29104589 TGCTGCTGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-G
131 TACTGC-GCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCA
* * * *
29104653 A-GCGTG-CGGGTGCTCAGCTGACAGGAGAGGCCGGTCAG-AGAGGCATAATG-TCAAGCCGGGG
195 ACCCATGACGAGTGCTC-G--GA-AGGAG-GGCCGG-CAGAAGAGGCATAATGCGCAAGCCGGGG
* * *
29104714 ATC-AGCCCGGTCCCTCTCTACGTGTCGTCGATCCCGCTACCGGTCCTGCTACCACAACCCTTGG
254 ATCGA-CCCGGTCCC-C-CT-C---T-G-CG-T---GCTACCGGTCCCGCTGCCACAACCCTCGG
*
29104778 TCCGACCT-GG
306 TCCG-GCTGGG
* * * *
29104788 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAAGGGCACTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTAAG
* * *
29104853 CCGGCTGGAGAGGCAGAATGTGCATGTCGGGGATCAGCCTGGTCCCCCCTGCGTGCTG-TAGATC
66 CCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCTGGTACCCCCTGCGTGCTGCT-GATC
* * * * * *
29104917 CTACTGC-CATAACCCTTGATCCGATCTGATCTTAGACTGGCAAAGAACTCCGTATGCATA-AGT
130 CTACTGCGC--AACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * ** * *
29104980 CAACCCATGAAACGAGTGTTCGGATGTTGTGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGAT
193 CAACCCATG--ACGAGTGCTCGGAAGGAGGGCCGGCAGAAGAGGCATAATGCGCAAGCCGGGGAT
* * ** *
29105045 CGACCCAGTCCCCCTCTGCGTACTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
256 CGACCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
* * * * * * *
29105105 GCTTAGACATGGAATGAACTCCCTATCCCTAAACCAACACACGAAACGGGTGTACGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTAAG
** * * * * * *
29105170 CCGATCGGAGGGGCAGAATGTGCAAGTCGGGGATTAGCCCGGTATCCCCTGCGTGCTACCGATCC
66 CCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCTGGTACCCCCTGCGTGCTGCTGATCC
* *
29105235 TACTGACGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
131 TACTG-CGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
29105298 AGGGATGAAC
Statistics
Matches: 669, Mismatches: 128, Indels: 83
0.76 0.15 0.09
Matches are distributed among these distances:
313 7 0.01
314 1 0.00
315 1 0.00
316 6 0.01
317 359 0.54
318 24 0.04
319 4 0.01
320 2 0.00
321 2 0.00
322 1 0.00
323 2 0.00
324 1 0.00
325 2 0.00
326 2 0.00
327 5 0.01
328 21 0.03
329 213 0.32
330 8 0.01
332 1 0.00
333 7 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTAAG
CCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCTGGTACCCCCTGCGTGCTGCTGATCC
TACTGCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCAA
CCCATGACGAGTGCTCGGAAGGAGGGCCGGCAGAAGAGGCATAATGCGCAAGCCGGGGATCGACC
CGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:29105057 original size:158 final size:159
Alignment explanation
Indices: 29104769--29105070 Score: 340
Period size: 158 Copynumber: 1.9 Consensus size: 159
29104759 CTGCTACCAC
* * * *
29104769 AACCCTTGGTCCGACCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTTGATCCGACCTGAGCTTAGACATGGAAAGAACTCCGTATGCATAAGCCAACCCATGAAA
* * * * * * **
29104834 CGAGCGTAAGGGCACTAAGCCGGCTGGAGAGGCAGAATGTGCATGTCGGGGATCAGCCTGGTCCC
66 CGAGCGTAAGGACACTAAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCC
*
29104899 CC-CTGCGTGCTGTAGATCCTACTGCCAT
131 CCTCTGCGTACTGTAGATCCTACTGCCAT
* * *
29104927 AACCCTTGATCCGATCTGATCTTAGAC-TGGCAAAGAACTCCGTATGCATAAGTCAACCCATGAA
1 AACCCTTGATCCGACCTGAGCTTAGACATGG-AAAGAACTCCGTATGCATAAGCCAACCCATGAA
* ** *** ** *
29104991 ACGAGTGTTCGGATGTTGTGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATC-GACCCAGTC
65 ACGAGCGTAAGGACACTAAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCAGTC
29105055 CCCCTCTGCGTACTGT
129 CCCCTCTGCGTACTGT
29105071 CGGTCCCGCT
Statistics
Matches: 116, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
157 4 0.03
158 102 0.88
159 10 0.09
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
AACCCTTGATCCGACCTGAGCTTAGACATGGAAAGAACTCCGTATGCATAAGCCAACCCATGAAA
CGAGCGTAAGGACACTAAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCC
CCTCTGCGTACTGTAGATCCTACTGCCAT
Found at i:29105305 original size:26 final size:26
Alignment explanation
Indices: 29105264--29105342 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
29105254 CTGGTCTGAT
29105264 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
29105290 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
*
29105316 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
29105342 C
1 C
29105343 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:29105964 original size:158 final size:154
Alignment explanation
Indices: 29105487--29105978 Score: 454
Period size: 158 Copynumber: 3.1 Consensus size: 154
29105477 CCGATTGGGG
* * * *
29105487 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAATCGAGCGCT-CGAGCGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGGTGCTCAG
* * * * *
29105551 CTGGTCGAAGAGGCAGAATACGCAAGTCGAGGATCAGACCAGTCCCCTTACGTGCTGTCAATCCT
64 C-GGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCAGTCCCCCTGCGTGCTGT-GATCCT
* * * *
29105616 ACTGTCACAACCCCCGGTCCGGTCTGAT
127 GCTGCCACAACCCTCGGTCTGGTCTGAT
* * *
29105644 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG-
** * * * *
29105709 CGACCGAAGAGGCATAATGCGCAAG-CTGAGGATCGGCCC-GATCCCCTCTGTGTGCTGTTGGTC
64 CGGTCGAAGAGGCAGAATGCGCAAGTC-GAGGATCAGCCCAG-TCCCC-CTGCGTGCTG-TGATC
* * * * **
29105772 CCGCTGGCACAAACCTCGGTCTGG-CGGGGG
125 CTGCTGCCACAACCCTCGGTCTGGTC-TGAT
** * *
29105802 CTTAGACATGGAATGAACTCTCG-ATGCCTAAGCCAACATATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
29105866 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCAGTCCCCCGTGCGTGCTGCTGATCT
64 -CGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCAGTCCCCC-TGCGTGCTG-TGATCC
** *
29105931 TGCTGCCGTAACCCTCAGTCTGGTCTGAT
126 TGCTGCCACAACCCTCGGTCTGGTCTGAT
29105960 CTTAGACTGAGAATGAACT
1 CTTAGACTG-GAATGAACT
29105979 TCATATGCTT
Statistics
Matches: 266, Mismatches: 54, Indels: 29
0.76 0.15 0.08
Matches are distributed among these distances:
156 4 0.02
157 92 0.35
158 163 0.61
159 7 0.03
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (154 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCG
GTCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCAGTCCCCCTGCGTGCTGTGATCCTGCTG
CCACAACCCTCGGTCTGGTCTGAT
Found at i:29106762 original size:671 final size:670
Alignment explanation
Indices: 29105302--29107683 Score: 2988
Period size: 671 Copynumber: 3.6 Consensus size: 670
29105292 TAGACTAGGG
* * * * * * *
29105302 ATGAACTCCGTATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACACACGGAATGAGCA
1 ATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * *
29105367 TGCAAGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCTCTG
66 TGCAGGCACTCAGCCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCTA
* * * *
29105432 CATGCTGTCGATCCCACTGCCGGTCCTG-CTGCCACAACCCTTTGTCCGATTGGGGCTTAGACAT
131 CGTGCTGTCGATCCCGCTGCCGGTCCTGACTGCCACAACCCTTGGTCCGACTGGGGCTTAGACAT
* * * * *
29105496 GGAATGAACTCCGTACGCCTAAGCCAACCCACGAATCGAGCGCTCGAGCGCTCAGCTGGTCGAAG
196 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACGAGCGCTCAGCTGGCCGGAG
* * *
29105561 AGGCAGAATACGCAAGTCGAGGATCAGACCAGTCCCCTTACGTGCTGTCAATCCTACTGTCACAA
261 AGGCAGAATGCGCAAGTCGAGGATCAGACCAGTCCCCCTGCGTGCTGTCAATCCTACTGTCACAA
*
29105626 CCCCCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
326 CCCCTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
*
29105691 AGCGTGCGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCCCT
391 AGCGTGTGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCCCT
* * * * * *
29105756 CTGTGTGCTGTTGGTCCCGCTGGCACAAACCTCGGTCTGGCGGGGGCTTAGACATGGAATGAACT
456 CTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT
* * *
29105821 CTCGATGCCTAAGCCAACATATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATG
521 CCCGATGCCTAAGCCAACACATGAAACGGGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATG
* * * * * *
29105886 CGCAAGTCGGGGATCAGCCCAGTCCCCCGTGCGTGCTGCTGATCTTGCTGCCGTAACCCTCAGTC
586 CGCAAGCCGGGGATCAGCCCAGTCCCCC-TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTC
* * *
29105951 TGGTCTGATCTTAGACTGAGA
650 CGATCCGATCTTAGACTGAGA
* *
29105972 ATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCG
1 ATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
29106037 TGCGGGCACTTAGCCGACCGGAAAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCTCTA
66 TGCAGGCACTCAGCCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCTA
* * * *
29106102 CGTGCTGCCGATCCCGCTGTCGGTCTTGAGT-CCACAACCCTTGGTCCGACTGGGGCTTAGACAT
131 CGTGCTGTCGATCCCGCTGCCGGTCCTGACTGCCACAACCCTTGGTCCGACTGGGGCTTAGACAT
* *
29106166 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAATCGAGCGCACGAGCGCTCAGCTGGCCGGAG
196 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACGAGCGCTCAGCTGGCCGGAG
** *
29106231 AGGCAGAATATGCAAGTTGAGGATCAGACCAGTCCCCCTGCGTGCTGTCAATCCTACTGTCACAA
261 AGGCAGAATGCGCAAGTCGAGGATCAGACCAGTCCCCCTGCGTGCTGTCAATCCTACTGTCACAA
*
29106296 CCCCTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACG
326 CCCCTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
29106361 AGCGTGTGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCCTC
391 AGCGTGTGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCC-C
* * * *
29106426 TCTGTGTGCTGCTGGTCCCGCTGGCACAACCCTCGGTCTGGCAGGGGCTTAGACATGGAATGAAC
455 TCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAAC
* * *
29106491 TCCCGATGCCTAAGCCAACATATGAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAAT
520 TCCCGATGCCTAAGCCAACACATGAAACGGGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAAT
* * * * * * * * *
29106556 GCGTAAACCGGGGATCGGCCCGGTCCCCCATGCATGCTGCCGATCTTGCTGTCGTAACCCTCGGT
585 GCGCAAGCCGGGGATCAGCCCAGTCCCCC-TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGT
29106621 CCGATCCGATCTTAGACTGAGA
649 CCGATCCGATCTTAGACTGAGA
* * *
29106643 ATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCGAAGTCAACCCATGAAACGAGCG
1 ATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * *
29106708 TGCAGGCACTCAGCCGATCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCTTCTA
66 TGCAGGCACTCAGCCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCTA
* * *
29106773 CGTGCTG-CTGATCCCGCTGCTGGTCCTGA-TTCCACAACCCTTGGTTCGACTGGGGCTTAGACA
131 CGTGCTGTC-GATCCCGCTGCCGGTCCTGACTGCCACAACCCTTGGTCCGACTGGGGCTTAGACA
* * * * *
29106836 TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGA-GGGTGCTCAACTGGCCGG
195 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-CACGAGCGCTCAGCTGGCCGG
* * * * ** * * *
29106900 AGAGGCAGAATGCGTAAGTCGAGGATC-GACCCGGTCCCTCCTACATGCTACCGATCCTGCTGCC
259 AGAGGCAGAATGCGCAAGTCGAGGATCAGA-CCAGTCCC-CCTGCGTGCTGTCAATCCTACTGTC
** * * *
29106964 GTAA-CCTTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCAC
322 ACAACCCCT-GGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAC
* ** * *
29107027 GAAACGAGCGTG-CGGTCGCTGAGCCGGTCGAAAAGGCATAATGCGCAAG-TCGAAGATC-GCCT
385 GAAACGAGCGTGTGGGT-GCTGAGCCGACCGAAGAGGCATAATGCGCAAGCT-GAGGATCGGCC-
* * * * * *
29107089 CGGTCCCCTTCTGCGTGCTACCGGTCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACAT
447 CGATCCCC-TCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAT
* * ** *
29107154 GGAATCAACTCCCTG-TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGCCCGAA
511 GGAATGAACTCCC-GATGCCTAAGCCAACACATGAAACGGGCGTGCGGGTGCTCAGCCGGTCGGA
* * * * * * *
29107218 GAGGCAGAATGCGTAAGCCGGAGACCTGCCCAATCCCCCTGCGTGCTATCGATCCTGCTACCGCA
575 GAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTGCGTGCTACCGATCCTGCTGCCGCA
* * *
29107283 ACCCTCGGTCTGGTCCGATCTTAGACTGGGA
640 ACCCTCGGTCCGATCCGATCTTAGACTGAGA
29107314 ATGAAC-TCTATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
1 ATGAACTTC-ATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
** * * * * *
29107378 GTGCAGGTGCTCAGTCGGCTGGAGAGGCATAATGCGTAAGCCGGGGATCAGCACGGTCCCCCTCT
65 GTGCAGGCACTCAGCCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCT
* * * ** **
29107443 ATGTGCTGTCGATCCCGCTGCCGATCCT-ACTGCCATAACCCTCAGTCCGGTTGGGGCTTAGACA
130 ACGTGCTGTCGATCCCGCTGCCGGTCCTGACTGCCACAACCCTTGGTCCGACTGGGGCTTAGACA
* * * *
29107507 TGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACG-G-GCATGTCG-GTGCTCAACCGGCC
195 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCA---CGAGCGCTCAGCTGGCC
* * * * * *
29107569 AGAAAGGCAGAATGCGCAAG-CCAGGTATC-GATCC-GATCCCCCCTGCATGCTGTCGATCCTGC
257 GGAGAGGCAGAATGCGCAAGTCGAGG-ATCAGA-CCAG-T-CCCCCTGCGTGCTGTCAATCCTAC
* * * *
29107631 TATCGCAA-CCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGC
318 TGTCACAACCCCT-GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
29107684 TTAGACATGG
Statistics
Matches: 1515, Mismatches: 172, Indels: 49
0.87 0.10 0.03
Matches are distributed among these distances:
668 1 0.00
669 1 0.00
670 425 0.28
671 824 0.54
672 263 0.17
673 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (670 bp):
ATGAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCAGGCACTCAGCCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCTA
CGTGCTGTCGATCCCGCTGCCGGTCCTGACTGCCACAACCCTTGGTCCGACTGGGGCTTAGACAT
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCACGAGCGCTCAGCTGGCCGGAG
AGGCAGAATGCGCAAGTCGAGGATCAGACCAGTCCCCCTGCGTGCTGTCAATCCTACTGTCACAA
CCCCTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
AGCGTGTGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCCCT
CTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT
CCCGATGCCTAAGCCAACACATGAAACGGGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATG
CGCAAGCCGGGGATCAGCCCAGTCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCC
GATCCGATCTTAGACTGAGA
Found at i:29106969 original size:355 final size:353
Alignment explanation
Indices: 29106314--29107803 Score: 1267
Period size: 355 Copynumber: 4.3 Consensus size: 353
29106304 CCGGTCTGAT
* * * ** * *
29106314 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGTGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
** * * * * ** *
29106379 CGACCGAAGAGGCATAATGCGCAAG-CTGAGGATCGGCCCGAT-CCCTCTCTGTGTGCTGCTGGT
66 CGGTCGGAGAGGCATAATGCGTAAGTC-GAGGATCAGCCCGGTCCCCT-TCTACGTGCTGCTGAT
* * *
29106442 CCCGCT---G----G----CACAACCCTCGGTCTGGCAGGGGCTTAGACATGGAATGAACTCCCG
129 CCCGCTGCGGTCCTGATACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT-CCG
** * * ** *
29106496 -ATGCCTAAGCCAACATATGAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGT
193 TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGT
* * * * * * ** * *
29106560 AAACCGGGGATCGGCCCGGTCCCCCATGCATGCTGCCGATCTTGCTGTCGTAACCCTCGGTCCGA
258 AAGCCGAGGATCGACCCGATCCCCC-TGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCGG
29106625 TCCGATCTTAGACTGAGAATGAACTTCGTATG
322 TCCGATCTTAGACTGAGAATGAACTTCGTATG
* * * *
29106657 CTTAGACTAGGGATGAACTCCGTATGCCGAAGTCAACCCATGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
*
29106722 CGATCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCTTCTACGTGCTGCTGATCC
66 CGGTCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCTTCTACGTGCTGCTGATCC
* * *
29106787 CGCTGCTGGTCCTGATTCCACAACCCTTGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTA
131 CGCTGC-GGTCCTGATACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
* * * *
29106852 TGCCTAAGCCAACCCACAAAACGAGCGTGAGGGTGCTCAACTGGCCGGAGAGGCAGAATGCGTAA
195 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGTAA
* * * * *
29106917 GTCGAGGATCGACCCGGTCCCTCCTACATGCTACCGATCCTGCTGCCGTAA-CCT---T-C-G--
260 GCCGAGGATCGACCCGATCCC-CCTGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCGGTC
29106974 -G----T---CT--G---G---TTCG-AT-
324 CGATCTTAGACTGAGAATGAACTTCGTATG
* * * * * *
29106986 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGTCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * *
29107051 CGGTCGAAAAGGCATAATGCGCAAGTCGAAGATC-GCCTCGGTCCCCTTCT--GCG-TGCT-A--
66 CGGTCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCC-CGGTCCCCTTCTACGTGCTGCTGATC
* * * * * *
29107109 ---C--CGGTCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATCAACTCCCTG
130 CCGCTGCGGTCCTGATACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
* * * *
29107169 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGCCCGAAGAGGCAGAATGCGTAA
195 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGTAA
* * * * *
29107234 GCCG-GAGACCTG-CCCAATCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGT
260 GCCGAG-GATC-GACCCGATCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCGGT
* *
29107297 CCGATCTTAGACTGGGAATGAAC-TCTATATG
323 CCGATCTTAGACTGAGAATGAACTTC-GTATG
* * *
29107328 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * *
29107393 CGG-CTGGAGAGGCATAATGCGTAAGCCGGGGATCAGCACGGTCCCCCTCTATGTGCTG-TCGAT
66 CGGTC-GGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCTTCTACGTGCTGCT-GAT
* * * * **
29107456 CCCGCTGCCGATCCT-ACTGCCATAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCC
129 CCCGCTG-CGGTCCTGA-TACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCC
* * * *
29107520 GTATGCCTAAACCAACCCACGAAACGGGCATGTC-GGTGCTCAACCGGCCAGAAAGGCAGAATGC
192 GTATGCCTAAGCCAACCCACGAAACGGGCGTG-CGGGTGCTCAACCGGCCGGAGAGGCAGAATGC
* * ** *
29107584 GCAAGCC-AGGTATCGATCCGATCCCCCCTGCATGCTGTCGATCCTGCTATCGCAACCCTCGGTC
256 GTAAGCCGAGG-ATCGACCCGAT-CCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGGTC
* * *
29107648 TGGTCTGATCTTAGACTGAGAATGAACTCCGTATG
319 CGGTCCGATCTTAGACTGAGAATGAACTTCGTATG
* * **
29107683 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAG-CTAACCCATGGAATAAGCGTGC-GGCTGC-C
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCAGGC-GCTC
* * * * ** *
29107744 AGTCGGTCAGAGAGGCAGAATGCGTAAG-CCAGGGATTGGCCCGGTCCCC-CCTACGTGCTG
63 AGCCGGTCGGAGAGGCATAATGCGTAAGTCGA-GGATCAGCCCGGTCCCCTTCTACGTGCTG
29107804 TCAATCTTAT
Statistics
Matches: 922, Mismatches: 152, Indels: 136
0.76 0.13 0.11
Matches are distributed among these distances:
316 25 0.03
317 122 0.13
318 2 0.00
320 2 0.00
322 1 0.00
325 2 0.00
326 4 0.00
327 2 0.00
328 3 0.00
329 97 0.11
330 2 0.00
331 4 0.00
332 2 0.00
334 2 0.00
337 2 0.00
339 4 0.00
341 3 0.00
342 94 0.10
343 110 0.12
344 8 0.01
345 2 0.00
346 2 0.00
347 1 0.00
350 1 0.00
351 3 0.00
353 12 0.01
354 159 0.17
355 248 0.27
356 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (353 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGTCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGGTCCCCTTCTACGTGCTGCTGATCC
CGCTGCGGTCCTGATACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGTAAG
CCGAGGATCGACCCGATCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCG
ATCTTAGACTGAGAATGAACTTCGTATG
Found at i:29107085 original size:158 final size:156
Alignment explanation
Indices: 29106828--29107321 Score: 499
Period size: 159 Copynumber: 3.1 Consensus size: 156
29106818 TCGACTGGGG
* * *
29106828 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGTGCTCAGC
* * * * *
29106893 TGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGGTCCCTCCTACATGCTACCGATCCT
65 CGGCCGAAGAGGCAGAATGCGTAAGTCGAAGATCG-CCCGGTCCCTCCTGCGTGCTACCGATCCT
* * *
29106958 GCTGCCGTAACCTTCGGTCTGGTTCGAT
129 GCTACCGCAACCCTCGGTCTGGTTCGAT
* * * *
29106986 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGTCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGT-GCTCAG
* * * * * *
29107050 CCGGTCGAAAAGGCATAATGCGCAAGTCGAAGATCGCCTCGGTCCCCTTCTGCGTGCTACCGGTC
64 CCGGCCGAAGAGGCAGAATGCGTAAGTCGAAGATCGCC-CGGT-CCCTCCTGCGTGCTACCGATC
* * * * ** * **
29107115 CCGCTACCACAACCCTCGATCCGACTGGGG
127 CTGCTACCGCAACCCTCGGTCTGGTTCGAT
* * * * *
29107145 CTTAGACATGGAATCAACTCCCTGTGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGTGCTCAGC
* * * * ** *
29107210 CGCCCGAAGAGGCAGAATGCGTAAGCCGGAGACCTGCCCAATCCC-CCTGCGTGCTATCGATCCT
65 CGGCCGAAGAGGCAGAATGCGTAAGTCGAAGATC-GCCCGGTCCCTCCTGCGTGCTACCGATCCT
*
29107274 GCTACCGCAACCCTCGGTCTGGTCCGAT
129 GCTACCGCAACCCTCGGTCTGGTTCGAT
29107302 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
29107322 TATATGCTTA
Statistics
Matches: 265, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 57 0.22
158 87 0.33
159 113 0.43
160 7 0.03
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGCTCAGCC
GGCCGAAGAGGCAGAATGCGTAAGTCGAAGATCGCCCGGTCCCTCCTGCGTGCTACCGATCCTGC
TACCGCAACCCTCGGTCTGGTTCGAT
Found at i:29107353 original size:26 final size:26
Alignment explanation
Indices: 29107302--29107354 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29107292 CTGGTCCGAT
*
29107302 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29107328 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
29107354 C
1 C
29107355 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29107696 original size:26 final size:26
Alignment explanation
Indices: 29107657--29107709 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29107647 CTGGTCTGAT
29107657 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
29107683 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
29107709 C
1 C
29107710 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:29107825 original size:183 final size:184
Alignment explanation
Indices: 29107498--29107863 Score: 398
Period size: 183 Copynumber: 2.0 Consensus size: 184
29107488 TCCGGTTGGG
**
29107498 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGGGCATGTCGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCATGTCGGTGCTCAA
* * * *
29107563 CCGGCCAGAAAGGCAGAATGCGCAAGCCAGGTATCGATCCGATCCCCCCTGCATGCTGTCGATCC
66 CCGGCCAGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCAATCC
* * * *
29107628 TGCTATCGCAACCCTCGGT-CTGGTCTGATCTTAGACT-GAGAATGAACTCCGTAT
131 TACTACCACAACCCTAGGTCCTGGTC-GATCTTAGACTAG-GAATGAACTCCGTAT
* * * * * *
29107682 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGGAATAAGCGTG-CGGCTGC-CA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCATGTCGG-TGCTCA
** * * * * * * *
29107745 GTCGGTCAGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCTACGTGCTGTCAATC
65 ACCGGCCAGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCAATC
* * * * * *
29107810 TTATTGCCACAACCCTAGGTCCTGTTCGATCTTAGGCTAGGAATGATCTCCGTA
130 CTACTACCACAACCCTAGGTCCTGGTCGATCTTAGACTAGGAATGAACTCCGTA
29107864 AGCCTAAGTC
Statistics
Matches: 148, Mismatches: 31, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
183 93 0.63
184 55 0.37
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCATGTCGGTGCTCAA
CCGGCCAGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCAATCC
TACTACCACAACCCTAGGTCCTGGTCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:29116814 original size:25 final size:26
Alignment explanation
Indices: 29116783--29116834 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29116773 CCGATCTGAT
*
29116783 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29116808 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29116834 C
1 C
29116835 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29117038 original size:26 final size:26
Alignment explanation
Indices: 29117002--29117054 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29116992 TCCCCTAAGC
*
29117002 CTTAGACT-GGGATTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
29117028 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29117054 C
1 C
29117055 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29117424 original size:26 final size:26
Alignment explanation
Indices: 29117395--29117447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29117385 CCAGACCGAT
29117395 CTTAGAC-TGAGAATGAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
*
29117421 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
29117447 C
1 C
29117448 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:29118486 original size:21 final size:21
Alignment explanation
Indices: 29118462--29118512 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
29118452 CATGCTGTCG
29118462 GTCCCACTGCCACAACCCTCA
1 GTCCCACTGCCACAACCCTCA
*
29118483 GTCCTACTGCCACAACCCTCA
1 GTCCCACTGCCACAACCCTCA
*
29118504 GTCCGACTG
1 GTCCCACTG
29118513 TGGCTTAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.47, G:0.14, T:0.18
Consensus pattern (21 bp):
GTCCCACTGCCACAACCCTCA
Found at i:29119392 original size:26 final size:26
Alignment explanation
Indices: 29119363--29119415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29119353 CCGATCTGAT
*
29119363 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29119389 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29119415 C
1 C
29119416 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29120105 original size:26 final size:26
Alignment explanation
Indices: 29120067--29120118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29120057 GGCTCAAACT
29120067 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29120093 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29120119 TCTAAGCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29120452 original size:26 final size:26
Alignment explanation
Indices: 29120410--29120462 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29120400 TCGGTTTGAT
29120410 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGATTGAACTCCGTATG
* *
29120436 CTTATACTAGGGA-TGAACTCTGTATG
1 CTTAGACT-GGGATTGAACTCCGTATG
29120462 C
1 C
29120463 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGATTGAACTCCGTATG
Found at i:29120517 original size:13 final size:13
Alignment explanation
Indices: 29120499--29120526 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
29120489 TGGGCGTTCA
29120499 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
29120512 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
29120525 GC
1 GC
29120527 AGAATGCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.54, T:0.07
Consensus pattern (13 bp):
GCCGGTCGGAGAG
Found at i:29120832 original size:26 final size:26
Alignment explanation
Indices: 29120803--29120855 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29120793 CCAGATCGAT
29120803 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
29120829 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
29120855 C
1 C
29120856 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:29121320 original size:13 final size:13
Alignment explanation
Indices: 29121302--29121329 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
29121292 CGAGAGCTCA
29121302 GCCGACCGGAGAG
1 GCCGACCGGAGAG
29121315 GCCGACCGGAGAG
1 GCCGACCGGAGAG
29121328 GC
1 GC
29121330 ATAATGCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.46, T:0.00
Consensus pattern (13 bp):
GCCGACCGGAGAG
Found at i:29121555 original size:12 final size:12
Alignment explanation
Indices: 29121538--29121567 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
29121528 ATCCCCTCTG
29121538 CTTGCTGCTGAT
1 CTTGCTGCTGAT
*
29121550 CTTGCTGCTGGT
1 CTTGCTGCTGAT
29121562 CTTGCT
1 CTTGCT
29121568 ACCGTAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (12 bp):
CTTGCTGCTGAT
Found at i:29122246 original size:159 final size:157
Alignment explanation
Indices: 29121796--29122258 Score: 470
Period size: 159 Copynumber: 2.9 Consensus size: 157
29121786 GGATTGCCCT
* * * * *
29121796 GATCCCTCTCTGCATGCTGTCGGTCCCACTGCCACAACCCTCAGT-TCGGCTGAGGCTTAGACAT
1 GATCCCCCTCTGCATGCTGTCGGT-CCGCTACCACAACCCTCGGTCT-GGCTGGGGCTTAGACAT
* * * *
29121860 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCGCAG
64 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAG
* *
29121925 AGGCAAATGTGCAAGCTAGGGACAGGCCC
129 AGGCAAATGCGCAAGCTAGGGACAGACCC
* * * * * * * **
29121954 GGTCCCCCCCTCCGTGCTGTCAGTCCTGCTACCACAACCCTCGGTTCAGTCT-GATCTTAGAC-T
1 GATCCCCCTCTGCATGCTGTCGGTCC-GCTACCACAACCCTCGG-TCTGGCTGGGGCTTAGACAT
* * * * * * * * * *
29122017 AGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGCGGGCGTTGAGTCG-GTCAG
64 -GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACT-GG
* *
29122081 AAAGGCATAATACGCAAGCTAGGGATC-GACCC
127 AGAGGCA-AATGCGCAAGCTAGGGA-CAGACCC
29122113 GATCCCCCTCTGCATGCTGTCGGTCTCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATG
1 GATCCCCCTCTGCATGCTGTCGGTC-CGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATG
* * *
29122178 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTG-GAGTACGGGCGCTCAACCGACTGGAG
65 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCAGCCGACTGGAG
29122242 AGGCAGAATGCGCAAGC
129 AGGCA-AATGCGCAAGC
29122259 CGGGGAATGG
Statistics
Matches: 236, Mismatches: 57, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 98 0.42
159 130 0.55
160 5 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GATCCCCCTCTGCATGCTGTCGGTCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAG
GCAAATGCGCAAGCTAGGGACAGACCC
Found at i:29122273 original size:159 final size:156
Alignment explanation
Indices: 29121785--29122313 Score: 469
Period size: 159 Copynumber: 3.3 Consensus size: 156
29121775 CCACAAAACG
* * * * * *
29121785 GGGATTGCCCTGATCCCTCTCTGCATGCTGTCGGTCCCACTGCCACAACCCTCAGT-TCGGCTGA
1 GGGATGGCCC-GATCCCCCTCTGCATGCTGTCGGT-CCGCTACCACAACCCTCGGTCT-GGCTGG
* *
29121849 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
63 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
29121914 GCCGACCGCAGAGGCAAATGTGCAAGCTA
128 GCCGACTGGAGAGGCAAATGCGCAAGCCA
* * * * * * * *
29121943 GGGACAGGCCCGGTCCCCCCCTCCGTGCTGTCAGTCCTGCTACCACAACCCTCGGTTCAGTCT-G
1 GGGA-TGGCCCGATCCCCCTCTGCATGCTGTCGGTCC-GCTACCACAACCCTCGG-TCTGGCTGG
** * * * * * * *
29122007 ATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCAACAAAACGAGCGTGCGGGCGTTG
63 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
29122071 AGTCG-GTCAGAAAGGCATAATACGCAAGCTA
127 AGCCGACT-GGAGAGGCA-AATGCGCAAGCCA
*
29122102 GGGATCGACCCGATCCCCCTCTGCATGCTGTCGGTCTCGCTACCACAACCCTCGGTCTGGCTGGG
1 GGGAT-GGCCCGATCCCCCTCTGCATGCTGTCGGTC-CGCTACCACAACCCTCGGTCTGGCTGGG
* *
29122167 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTG-GAGTACGGGCGCTCA
64 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
* *
29122231 ACCGACTGGAGAGGCAGAATGCGCAAGCCG
128 GCCGACTGGAGAGGCA-AATGCGCAAGCCA
* * * *
29122261 GGGAATGGCCCGATCCCTCT-TG-AGTGCTGCCGATCCTGCTGCCACAACCCTCG
1 GGG-ATGGCCCGATCCCCCTCTGCA-TGCTGTCGGTCC-GCTACCACAACCCTCG
29122314 ATTCGATCTG
Statistics
Matches: 288, Mismatches: 67, Indels: 32
0.74 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 128 0.44
159 149 0.52
160 6 0.02
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (156 bp):
GGGATGGCCCGATCCCCCTCTGCATGCTGTCGGTCCGCTACCACAACCCTCGGTCTGGCTGGGGC
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACTGGAGAGGCAAATGCGCAAGCCA
Found at i:29123305 original size:158 final size:156
Alignment explanation
Indices: 29123082--29123574 Score: 498
Period size: 158 Copynumber: 3.1 Consensus size: 156
29123072 GCTTAAACAT
* * * * * *
29123082 GGAATGAACTCCATATGCCTAAGCCAACCCATGCAATGAGCGTGCGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAG-AGGAG
* *
29123147 AGGCAGAATGCACAAGCTGGGGACCGATCCGGTCCCCCCTGCATGCTGTCAATCCTATTGCCACA
65 AGGCAGAATGCACAAGCTGGGGATCGATCCGGTCCCCCCTGCGTGCTG-CAATCCTATTGCCACA
* *
29123212 ACCCTCGATCTGGTTCGATCTTACACTG
129 ACCCTCGATCTGGCTCGATCTTAGACTG
* * *
29123240 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCAGAGGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGA-GGAG
* * * * * ***
29123305 AGGCATAATGCACAAG-TCGGGGATCGACCCGGTCTCCCTCTGCGTGTTGCTAGTCCCGCTGCCA
65 AGGCAGAATGCACAAGCT-GGGGATCGATCCGGTC-CCCCCTGCGTGCTGC-AATCCTATTGCCA
* * * *
29123369 TAACCCTC-AGTCTAGCTGGGTCTTAGACAT-
127 CAACCCTCGA-TCTGGCTCGATCTTAGAC-TG
* *
29123399 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGTAGGCCAGA-
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCT--G-A-GCCAGAG
* *
29123463 GAGA--CAGAATGCACAAGCTGGGGATC--TGCCGGATCCCCCCTGTGTGCTACCAATCCTATTG
62 GAGAGGCAGAATGCACAAGCTGGGGATCGAT-CCGG-TCCCCCCTGCGTGCT-GCAATCCTATTG
* * * *
29123524 TCGCAACCCTCGGTCTGGCTCGATCTCAGACTG
124 CCACAACCCTCGATCTGGCTCGATCTTAGACTG
29123557 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
29123575 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 49, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
157 2 0.01
158 145 0.54
159 109 0.40
160 2 0.01
161 5 0.02
162 1 0.00
163 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGAGGAGA
GGCAGAATGCACAAGCTGGGGATCGATCCGGTCCCCCCTGCGTGCTGCAATCCTATTGCCACAAC
CCTCGATCTGGCTCGATCTTAGACTG
Found at i:29123587 original size:26 final size:26
Alignment explanation
Indices: 29123551--29123600 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
29123541 GCTCGATCTC
29123551 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
29123577 AGACTGGGAATGAACTCTGTATGC
1 AGACTGGGAATGAACTCCGTATGC
29123601 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:29125318 original size:32 final size:32
Alignment explanation
Indices: 29125281--29125377 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
29125271 AAAAATGTGG
29125281 CACCAGCACATGCCCGAGCCTAGCATGTGCAC
1 CACCAGCACATGCCCGAGCCTAGCATGTGCAC
*
29125313 CACCAGCACATGCCTGAGCCTAGCATGTGCAC
1 CACCAGCACATGCCCGAGCCTAGCATGTGCAC
*
29125345 CACCAGCACATGCCCAAGCCTAGCATGTGCAC
1 CACCAGCACATGCCCGAGCCTAGCATGTGCAC
29125377 C
1 C
29125378 GTGGCTCAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.26, C:0.40, G:0.21, T:0.13
Consensus pattern (32 bp):
CACCAGCACATGCCCGAGCCTAGCATGTGCAC
Found at i:29125369 original size:17 final size:16
Alignment explanation
Indices: 29125285--29125369 Score: 52
Period size: 17 Copynumber: 5.2 Consensus size: 16
29125275 ATGTGGCACC
29125285 AGCACATGCCCGAGCCT
1 AGCACATGCCC-AGCCT
**
29125302 AGCATGTGCACCA-CC-
1 AGCACATGC-CCAGCCT
*
29125317 AGCACATGCCTGAGCCT
1 AGCACATGCC-CAGCCT
**
29125334 AGCATGTGCACCA-CC-
1 AGCACATGC-CCAGCCT
29125349 AGCACATGCCCAAGCCT
1 AGCACATGCCC-AGCCT
29125366 AGCA
1 AGCA
29125370 TGTGCACCGT
Statistics
Matches: 50, Mismatches: 10, Indels: 16
0.66 0.13 0.21
Matches are distributed among these distances:
14 3 0.06
15 16 0.32
16 8 0.16
17 20 0.40
18 3 0.06
ACGTcount: A:0.27, C:0.39, G:0.21, T:0.13
Consensus pattern (16 bp):
AGCACATGCCCAGCCT
Found at i:29125787 original size:158 final size:157
Alignment explanation
Indices: 29125415--29125915 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 157
29125405 AACTCCGTAT
* *
29125415 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
29125480 CCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCTATCCCTCCTGCATGTTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCTCCTGCATGCTGTCGATCC
* * * * ** *
29125545 TCTATCACTACCCTCGGTCTGGTTCGA
131 GCTACCACAACCCTCGGTCCGACTAGA
* * * * * *
29125572 TCTTAGAC-TGGGAATGAATTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
29125636 GCCGATCGGAGAGGCATAATG-AGCAAGCCGAGGATCAGCTCGGTCCCTCTCTGCGTGCTGTCGG
65 GCCGACCGGAGAGGCAGAATGCA-CAAGCCGAGGATCAGCCCGATCCCTC-CTGCATGCTGTCGA
*
29125700 TCCGCTACCACAACCC-CTGGTCCGACTAGG
128 TCCGCTACCACAACCCTC-GGTCCGACTAGA
* * * * *
29125730 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
29125795 CCGGCTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCACC-CCTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATC-CCTCCTGCATGCTGTCGATC
* * *
29125859 CTGCTGCCACAACCCTCGGTCC-AGTTCGA
130 C-GCTACCACAACCCTCGGTCCGA-CTAGA
* *
29125888 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29125916 TTATACTAGG
Statistics
Matches: 276, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 110 0.40
158 160 0.58
159 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCTCCTGCATGCTGTCGATCC
GCTACCACAACCCTCGGTCCGACTAGA
Found at i:29126646 original size:26 final size:26
Alignment explanation
Indices: 29126608--29126660 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29126598 GGCTCAAAAT
29126608 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
29126634 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
29126660 C
1 C
29126661 CTAAGCCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29126821 original size:26 final size:26
Alignment explanation
Indices: 29126792--29126843 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29126782 CCGATCTGAT
29126792 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTGGAGAA-GAACTCCGTATG
*
29126818 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTAGACTGGAGAAGAACTCCGTATG
29126844 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAGAAGAACTCCGTATG
Found at i:29127199 original size:26 final size:26
Alignment explanation
Indices: 29127170--29127222 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29127160 CTGGTCCGAT
29127170 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29127196 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29127222 C
1 C
29127223 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29127527 original size:159 final size:159
Alignment explanation
Indices: 29127195--29127591 Score: 386
Period size: 159 Copynumber: 2.5 Consensus size: 159
29127185 AACTCCGTAT
*
29127195 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
29127259 GCCAGTCGGAGAGGCAGAATGCGCAAGAAGGGGATCAGCCCGATCCCCTCCTACGTGCTGTCCAT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGAAGAGGATCAGCCCGATCCCCTCCTACGTGCTATACAT
* * * * * *
29127324 CCTACTGTCGCAACCCTCGGTCTGGTCCTA
130 CCCACTGCCCCAACCCTCGATCTGATCCGA
* * * * * * *
29127354 TCTCA-AAATGGGAATGAACTCTGTATGCCTAAGTCAACCTATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * ** ** *
29127418 GCCAGCCTGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCC-CTCTGTGTGCTATAGA
65 GCCAGCCGGAGAGGCAGAATGCGCAAGAAGAGGATCAGCCCGATCCCCTC-CTACGTGCTATACA
* * * ** *
29127482 TCCCGCTGCCCCAACCCTTGATTTGATTGGG
129 TCCCACTGCCCCAACCCTCGATCTGATCCGA
* ** * * * *
29127513 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
29127578 CCGGCCAGAGAGGC
66 CCAGCCGGAGAGGC
29127592 GAAATGCACA
Statistics
Matches: 187, Mismatches: 47, Indels: 8
0.77 0.19 0.03
Matches are distributed among these distances:
158 4 0.02
159 179 0.96
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGAAGAGGATCAGCCCGATCCCCTCCTACGTGCTATACATC
CCACTGCCCCAACCCTCGATCTGATCCGA
Found at i:29128425 original size:26 final size:26
Alignment explanation
Indices: 29128387--29128439 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29128377 GGCTCAAAAT
29128387 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29128413 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29128439 C
1 C
29128440 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29128787 original size:159 final size:158
Alignment explanation
Indices: 29128412--29128850 Score: 460
Period size: 159 Copynumber: 2.8 Consensus size: 158
29128402 AACTCCGTAT
*
29128412 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
29128477 CTGGCCGGAA-AGGCAGAATGTGCAAGCCAGGGATCAGCCCGGTCCCCC-CTGCGTGCTATCGAT
66 C-CGCC-GAAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGATCCCCCTCTGAGTGCTACCGAT
** * ** *
29128540 CCTGCTATCGTAACCCTCAGTCCGATCTAA
129 CCCACTACCACAACCCTCAGTCCGAGCTAA
* * * * * *
29128570 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCCCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** *
29128634 GCCAGCCAAAGAGGCATAATGCGCAAGCTGGGGATCAGCTCGATCCCCCTCTGAGTG-TAACCGG
65 GCC-GCCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGATCCCCCTCTGAGTGCT-ACCGA
* *
29128698 TCCCACTACCACAACCCTCGGTCCG-GCTAGG
128 TCCCACTACCACAACCCTCAGTCCGAGCTA-A
* * * *
29128729 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
29128794 CCGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACCT-GATCCCCCT-TGCGTGCT
66 CCG-CCGAAGAGGCAGAATGCGCAAGCCAGGGATC-AGCTCGATCCCCCTCTGAGTGCT
29128851 GTCGATCCTG
Statistics
Matches: 229, Mismatches: 42, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.01
158 103 0.45
159 119 0.52
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGATCCCCCTCTGAGTGCTACCGATCC
CACTACCACAACCCTCAGTCCGAGCTAA
Found at i:29128917 original size:26 final size:26
Alignment explanation
Indices: 29128888--29128940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29128878 CTGATTCGAT
*
29128888 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29128914 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29128940 C
1 C
29128941 CTAAGCCTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29129192 original size:277 final size:279
Alignment explanation
Indices: 29128696--29129221 Score: 680
Period size: 277 Copynumber: 1.9 Consensus size: 279
29128686 GAGTGTAACC
** * *
29128696 GGTCCCACTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATTGAATGAACTCCCTATGCCTAA
1 GGTCCCACTACCACAACCCTCAATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
** * * *
29128761 GCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCCAGGG
66 GCCAACCCACAAAACGGGCGTGCAGACGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGG
* * ** * * *** * * *
29128826 ATCGACCTGATCCCCCTTGCGTGCTGTCGATCCTGCTGTGGCAACCCTCAGTCTGATTCGATCTT
131 ATCGACCTGATCCCCCCTGCATGCTACCAATCCTGATACCGCAACCCTCAGACCGATCCGATCTT
* *
29128891 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCTCGAAATG
196 AGACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGCCTCGAAATG
29128956 GGTCCGATTCAGAAAAAAG
261 GGTCCGATTCAGAAAAAAG
* *
29128975 GGTCCCACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAA-TCCCTATGCCTAA
1 GGTCCCACTACCACAACCCTCAATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * **
29129039 GCTAACCCACAAAACGGGTGTGCAGATGCTCAGCGGAGCGAA-AGGCAGAATGCGCAAGCTGGGG
66 GCCAACCCACAAAACGGGCGTGCAGACGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGG
* * * *
29129103 ATC-AGCCTGATCCCCCCTGCATTCTACCAATTCTGATACCGTAACCCTCAGACCGGTCCGATCT
131 ATCGA-CCTGATCCCCCCTGCATGCTACCAATCCTGATACCGCAACCCTCAGACCGATCCGATCT
* *
29129167 TAGGCTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCTGTATGCCTAA
195 TAGACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAA
29129222 ACCAACCCAC
Statistics
Matches: 208, Mismatches: 38, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
276 1 0.00
277 116 0.56
278 46 0.22
279 45 0.22
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (279 bp):
GGTCCCACTACCACAACCCTCAATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACAAAACGGGCGTGCAGACGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGG
ATCGACCTGATCCCCCCTGCATGCTACCAATCCTGATACCGCAACCCTCAGACCGATCCGATCTT
AGACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGCCTCGAAATG
GGTCCGATTCAGAAAAAAG
Found at i:29129353 original size:184 final size:184
Alignment explanation
Indices: 29129159--29129554 Score: 525
Period size: 184 Copynumber: 2.2 Consensus size: 184
29129149 CTCAGACCGG
* *
29129159 TCCGATCTTAGGCTGGGAATGAACTCCGTATGCTCAGAC-TGGGGATGAACTCTGTATGCCTAAA
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACAT-GGAATGAACTCTGTATGCCTAAA
*
29129223 CCAACCCACAAAACGAGCATGCGGGTGCTTAGCCGGCCGGAGAGGTAGAATGCGCAAGTCAAGGA
65 CCAACCCACAAAACGAGCATGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTCAAGGA
* * *
29129288 TTGGCCTAGTCCCCACTGTGTGCTATCGATCCTCCTACCACAACCCTCGGTCTGA
130 CTAGCCCAGTCCCCACTGTGTGCTATCGATCCTCCTACCACAACCCTCGGTCTGA
* * * *
29129343 TCCGATCTTAGACTGGGAATTAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACATGGAATGAACTCTGTATGCCTAAAC
** * * * *
29129408 CAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGTCGAGGAC
66 CAACCCACAAAACGAGCATGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTCAAGGAC
* * * * ** *
29129473 TAGCCCAGTCCCCCCTGTGTGCTGTCGATCCTGCTGCTGCAACCGTCGGTC---
131 TAGCCCAGTCCCCACTGTGTGCTATCGATCCTCCTACCACAACCCTCGGTCTGA
*
29129524 T--GATCTTAGACTGGGAATGAACTTCGTATGC
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
29129555 CTAAGTCAAC
Statistics
Matches: 187, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
179 29 0.16
181 1 0.01
184 156 0.83
185 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (184 bp):
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACATGGAATGAACTCTGTATGCCTAAAC
CAACCCACAAAACGAGCATGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTCAAGGAC
TAGCCCAGTCCCCACTGTGTGCTATCGATCCTCCTACCACAACCCTCGGTCTGA
Found at i:29129387 original size:26 final size:26
Alignment explanation
Indices: 29129349--29129401 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
29129339 CTGATCCGAT
*
29129349 CTTAGACTGGGAATTAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
29129375 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
29129401 C
1 C
29129402 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29129637 original size:153 final size:152
Alignment explanation
Indices: 29129375--29129871 Score: 450
Period size: 159 Copynumber: 3.2 Consensus size: 152
29129365 ACTTCGTATG
* *
29129375 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-
* * * **
29129440 CGGCCGGAGAGGTAGAATGCGTAAG-TCGAGGA-CTAGCCCAGTCCCCCCTGTGTGCTGTCGATC
65 CGGCCGGAGAGGCAGAATGCGCAAGCT-GAGGATC-GGCCTGGTCCCCCCTGTGTGCTGTCGATC
* *
29129503 CTGCTGCTGCAACCGTCGGTCTGAT
128 CTGCTGCCGCAACCGTTGGTCTGAT
* * *
29129528 CTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
29129591 GTCGGCCAGAGAGGCATAATGTGCATGCTGGGGATCGGCCTGGTCCCCCTCTATGTGCTGTCGGT
64 G-CGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTGGTCCCCC-CTGTGTGCTGTCGAT
* * * **
29129656 -CTCACTGCCACAACCCTTGGTCCAGCTGGGG
127 CCT-GCTGCCGCAACCGTTGGT----CT-GAT
** * *
29129687 CTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
29129752 TGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATTGG-CTCGGTCCCCCCTGCGTGCTGTCGATCC
66 -GGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCT-GGTCCCCCCTGTGTGCTGTCGATCC
* *
29129816 TGCTACCGTAACCCTCGGTTTGGTCTGAT
129 TGCTGCCGCAA--C-C-G-TTGGTCTGAT
29129845 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
29129872 TTAGACTAGG
Statistics
Matches: 269, Mismatches: 53, Indels: 39
0.75 0.15 0.11
Matches are distributed among these distances:
152 2 0.01
153 90 0.33
154 28 0.10
157 1 0.00
158 46 0.17
159 94 0.35
160 2 0.01
161 1 0.00
163 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (152 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
GGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCCTG
CTGCCGCAACCGTTGGTCTGAT
Found at i:29130993 original size:26 final size:26
Alignment explanation
Indices: 29130964--29131016 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29130954 CTGGTCTGAT
*
29130964 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29130990 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29131016 C
1 C
29131017 GTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29132408 original size:26 final size:26
Alignment explanation
Indices: 29132372--29132422 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
29132362 CTGGTTAGAT
29132372 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29132398 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
29132423 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29132632 original size:26 final size:26
Alignment explanation
Indices: 29132581--29132633 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29132571 TCGATCTGAT
*
29132581 CTTAGACTGGGAATAAACTTCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
29132607 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
29132633 C
1 C
29132634 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:29132908 original size:159 final size:159
Alignment explanation
Indices: 29132607--29133109 Score: 462
Period size: 159 Copynumber: 3.2 Consensus size: 159
29132597 ACTTCATATG
* * * ** ** * *
29132607 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCACGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTGAA
** * * * * * * * * *
29132671 CCGATCAGAAAGGCAGAAT-CTGCAAGCCGGGGACCGACCCGGTCCCTCTCTACGTGCTGTCGAT
65 CCGGCCGGAGAGGCAGAATGC-GCAAGACAGGAATCGGCCCGGTCCCCCTCTATGTGCTGTCGAT
29132735 CCTGCTACCACAACCCTCGGTCTGGTCCGAT
129 CCTGCTACCACAACCCTCGGTCTGGTCCGAT
** *
29132766 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAATGAGCGTTCGGGCACTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTGAAC
* * * * * * *
29132831 CGGTCGGAGAGGCATAATGCGCAGGTCAGGGATCGGGCCGGTCCCCCTCTATGTGCTGTCGGTCC
66 CGGCCGGAGAGGCAGAATGCGCAAGACAGGAATCGGCCCGGTCCCCCTCTATGTGCTGTCGATCC
* * * * **
29132896 CGCTACCACAACCGTCGGTCCGG-CTGGGG
131 TGCTACCACAACCCTCGGTCTGGTC-CGAT
* * * * *
29132925 CTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTTA
1 CTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTGA
** *
29132988 GTCGGCCGGAGAGGCAGAATGCGCAAGACAGGAATCGGCCCGGTCCCCC-CTATGTGTTGTTC-A
64 ACCGGCCGGAGAGGCAGAATGCGCAAGACAGGAATCGGCCCGGTCCCCCTCTATGTGCTG-TCGA
* ** * *
29133051 TCCTACTACCGTAACCCTCCGTCTGGTCCAAT
128 TCCTGCTACCACAACCCTCGGTCTGGTCCGAT
29133083 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
29133110 TTAGATTGGG
Statistics
Matches: 275, Mismatches: 60, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 53 0.19
159 217 0.79
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTGAAC
CGGCCGGAGAGGCAGAATGCGCAAGACAGGAATCGGCCCGGTCCCCCTCTATGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCTGGTCCGAT
Found at i:29133119 original size:26 final size:26
Alignment explanation
Indices: 29133083--29133135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29133073 CTGGTCCAAT
*
29133083 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
29133109 CTTAGATTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29133135 C
1 C
29133136 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29133805 original size:26 final size:26
Alignment explanation
Indices: 29133766--29133819 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
29133756 GGTCTGATCT
29133766 TAGACTGGGAATGAACTCCGCATGCC
1 TAGACTGGGAATGAACTCCGCATGCC
* *
29133792 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGCATGCC
29133818 TA
1 TA
29133820 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGCATGCC
Found at i:29134308 original size:159 final size:158
Alignment explanation
Indices: 29133937--29134461 Score: 544
Period size: 158 Copynumber: 3.3 Consensus size: 158
29133927 GATACTTCTA
* * *
29133937 CCACAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
** * * * *
29134002 GAAA-GGAGCGAACGGGCACTCAGTCGGCCAGAGAGGCAGAATGTGCAAGCTGGGGATCGACCCG
66 GAAACGG-GCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGC-CGGGATCGACCCG
* * * *
29134066 GT-CCTCCCCGCGTGCTGTCGATCCTGCTG
129 ATCCCTCTCTGCGTGCTGTCGATCCTACTG
* * * *
29134095 CCGCAACCCTCGGTCCAGTCTGA-TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCC
1 CCACAACCCTCGGTCC-GACTGAGGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCC
* * * * *
29134158 ATGAAACGGGCGTGCGGGGGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCC
64 ATGAAACGGGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCC-GGGATCGACCC
* * * *
29134223 GATCCCTCTCTGCATGCTGCCGGTCCCACTG
128 GATCCCTCTCTGCGTGCTGTCGATCCTACTG
* * **
29134254 CCACAACCCTCAGTCCGACTGAGGATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
* * * * *
29134319 GAAACGGACGTGCAGGCGCTTAGCCGGCTAGAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGA
66 GAAACGGGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGA
* * *
29134384 TCCCCCT-TGCGTGCTGTCGATCGTTCTG
130 TCCCTCTCTGCGTGCTGTCGATCCTACTG
* * * *
29134412 CCACAACCCTC-GTCTGGTCTGA-TCTTAGAC-TAGGAATGAACTCCGTATGC
1 CCACAACCCTCGGTC-CGACTGAGGCTTAGACAT-GGAATGAACTCTGTATGC
29134462 TTAGACTGGG
Statistics
Matches: 303, Mismatches: 54, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
156 1 0.00
157 27 0.09
158 138 0.46
159 136 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
GAAACGGGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGAT
CCCTCTCTGCGTGCTGTCGATCCTACTG
Found at i:29134381 original size:317 final size:322
Alignment explanation
Indices: 29133792--29134461 Score: 800
Period size: 317 Copynumber: 2.1 Consensus size: 322
29133782 TCCGCATGCC
* * *
29133792 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACTTAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTGAGCCA
* * *
29133857 ACTGGAGAGGCATAATGCACAAGCCGGGGATCAGCTCGATCCCCCTCTGCATGCTGTCGATCCCG
66 ACCGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGC-GTCGA--CCG
* * * * * **
29133922 CTGCCGATACTTCTACCACAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACTCTGTATG
128 CTGCC---ACTACTACCACAACCCTCAGTCCGACTGAGGATTAGACATGGAATGAACTCCCTATG
* * * *
29133987 CCTAAGCCAACCCACGAAAGGAGCGAACGGGCACTCAGTCGGCCAGAGAGGCAGAATGTGCAAGC
190 CCTAAGCCAACCCACGAAAGGAGCGAACAGGCACTCAGCCGGCCAGAAAGGCAGAATGCGCAAGC
* * * *
29134052 TGGGGATCGACCCGGTCCTCCC-CGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCT
255 CGAGGATCGACCCGATCC-CCCTCGCGTGCTGTCGATCCTGCTGCCACAACCCTC-GTCCAGTCT
29134116 GATCT
318 GATCT
* * * ** *
29134121 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCGTGCGGGGGCTGAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTGAGCCA
* * *
29134186 ACCGGAGAGGCATAATGCGCAAGCCAGGGATC-GACCCGATCCCTCTCTGCATGC-T-G-CCGGT
66 ACCGGAGAGGCATAATGCACAAGCCAGGGATCAG-CCCGATCCCCCTCTGCATGCGTCGACCGCT
*
29134247 -CC-C-ACTGCCACAACCCTCAGTCCGACTGAGGATTAGACATGGAATGAACTCCCTATGCCTAA
130 GCCACTACTACCACAACCCTCAGTCCGACTGAGGATTAGACATGGAATGAACTCCCTATGCCTAA
* ** * * *
29134309 GCCAACCCATGAAACGGA-CGTGCAGGCGCTTAGCCGGCTAGAAAGGCAGAATGCGCAAGCCGAG
195 GCCAACCCACGAAA-GGAGCGAACAGGCACTCAGCCGGCCAGAAAGGCAGAATGCGCAAGCCGAG
* * * **
29134373 GATCGACCCGATCCCCCTTGCGTGCTGTCGATCGTTCTGCCACAACCCTCGTCTGGTCTGATCT
259 GATCGACCCGATCCCCCTCGCGTGCTGTCGATCCTGCTGCCACAACCCTCGTCCAGTCTGATCT
*
29134437 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
29134462 TTAGACTGGG
Statistics
Matches: 294, Mismatches: 44, Indels: 19
0.82 0.12 0.05
Matches are distributed among these distances:
316 38 0.13
317 140 0.48
318 4 0.01
322 2 0.01
323 4 0.01
326 1 0.00
327 1 0.00
328 1 0.00
329 103 0.35
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (322 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTGAGCCA
ACCGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCGTCGACCGCTG
CCACTACTACCACAACCCTCAGTCCGACTGAGGATTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCACGAAAGGAGCGAACAGGCACTCAGCCGGCCAGAAAGGCAGAATGCGCAAGCCGAGGA
TCGACCCGATCCCCCTCGCGTGCTGTCGATCCTGCTGCCACAACCCTCGTCCAGTCTGATCT
Found at i:29134473 original size:26 final size:26
Alignment explanation
Indices: 29134435--29134513 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
29134425 CTGGTCTGAT
*
29134435 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29134461 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29134487 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29134513 C
1 C
29134514 CTATGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29136194 original size:26 final size:26
Alignment explanation
Indices: 29136165--29136217 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29136155 CCGGTCCGAT
*
29136165 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
29136191 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
29136217 C
1 C
29136218 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:29136493 original size:159 final size:157
Alignment explanation
Indices: 29136191--29136695 Score: 379
Period size: 159 Copynumber: 3.2 Consensus size: 157
29136181 ACTCCGTATG
* * * * *
29136191 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * ** * * * * * * **
29136255 CCGGTCGGAGAGGTAGAATACGTAAGTTGGGGA-CCAGCCTGGTCCCATCCTACGTGCTATCGAT
65 CCGGCCGGAGAGGCAGAATGCGCAAG-CCGGAATCGA-CCCGATCCC-CCCTACGTACTGCCGAT
** **
29136319 CCTGCTACCGTAACCCTCGGTCCGGTCCGAT
127 CCCACTACCACAACCCTCGGTCCGGTCCGAT
* * * *
29136350 CTTAGACTGGGAATAAACTCCCTATGCTTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* * * * * * *
29136415 TGGCCGGAGAGGCATAATGCGTAAGTCGAGAATCGACCCGGTCACTCTCTACGTACTGCCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCG-GAATCGACCCGATC-CCCCCTACGTACTGCCGATCC
* * * **
29136480 CACTGCCACAACCCTCGGTTCGG-CTGGGG
129 CACTACCACAACCCTCGGTCCGGTC-CGAT
* * * * * *
29136509 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGTGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * ** * *
29136573 CCGGGCGGAGAGGCAGAATGTGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGTTGCCGGTCCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGAATCGACCCGATCCCCCCTACGTACTGCCGATCCC
* * * *
29136638 GCTACCGCAACCCTCGGTCCTGTCTGAT
130 ACTACCACAACCCTCGGTCCGGTCCGAT
* *
29136666 CTTAGGCTGGGAATGAACTCCGTATGCTTA
1 CTTAGACTGGGAATGAACTCCCTATGCTTA
29136696 GACTGAGGAT
Statistics
Matches: 270, Mismatches: 68, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 58 0.21
158 17 0.06
159 190 0.70
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGAATCGACCCGATCCCCCCTACGTACTGCCGATCCCA
CTACCACAACCCTCGGTCCGGTCCGAT
Found at i:29137426 original size:26 final size:26
Alignment explanation
Indices: 29137388--29137440 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29137378 GGCTCAAAAT
29137388 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
29137414 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
29137440 C
1 C
29137441 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:29137621 original size:26 final size:25
Alignment explanation
Indices: 29137573--29137622 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
29137563 TTGGTTCGAT
*
29137573 CTTAGACTGGGAATGAACCCGTATG
1 CTTAGACTGGGAATGAACACGTATG
29137598 CTTAGACTAGGG-ATGAACTACGTAT
1 CTTAGACT-GGGAATGAAC-ACGTAT
29137623 CACTAAGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACACGTATG
Found at i:29138281 original size:26 final size:26
Alignment explanation
Indices: 29138231--29138281 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29138221 TGGTCTGATC
* **
29138231 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATAAACTCCATATGG
*
29138257 TTAGACTGGGGATAAACTCCATATG
1 TTAGACTGGGAATAAACTCCATATG
29138282 CCTAAATCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGG
Found at i:29139744 original size:158 final size:157
Alignment explanation
Indices: 29139500--29139941 Score: 354
Period size: 158 Copynumber: 2.8 Consensus size: 157
29139490 CGTGCGGGTG
* * * * * * *
29139500 CTCAGCCGACCGGAGAGGCATAATGC-ACAAGAT-GAGGATCAGCCCGATCCCCCCTGCGGGCTG
1 CTCAGCCGGCCGAAGAGGCAGAATGCGA-AAG-TCGAGGATCGGCCCGGTCCCCCCTACGTGCTG
* ** * ** *
29139563 TCGATCTTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGCACTCCGTATGCAT
64 CCGATCCCGCTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCAT
**
29139628 AAGTCAACCCACGAAATGAGCATACGAACA
128 AACCCAACCCACGAAATGAGCATACGAACA
* * * * *
29139658 TTGAGCTGGCCGAAGAGGCATAATGCGTAAG-CTGAGGATCGGCCCGGTCCCCCTCTACGTGCTG
1 CTCAGCCGGCCGAAGAGGCAGAATGCGAAAGTC-GAGGATCGGCCCGGTCCCCC-CTACGTGCTG
* * * ** * * * *
29139722 CCGGTCCCGCTGCCACAA-CCTCGATCCGACTGGGGCTTAGACAT-GGAATAAAATCCCTATGCC
64 CCGATCCCGCTGCCACAACCCTCGGTCCGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCA
* * ** *
29139785 TAACCCAACCCATGAAATGGGCATACGGTCG
127 TAACCCAACCCACGAAATGAGCATACGAACA
* * * * * * *
29139816 CTCAGCCGGCTGGAGAGGCAGAATGCGAAAGTCGGGGATTGGCCCGGTCCTCCCTGCGTGCTGCT
1 CTCAGCCGGCCGAAGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTGCC
* * * * *
29139881 GATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
66 GATCCCGCTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCCGTATGC
29139942 TTAGACTGGG
Statistics
Matches: 216, Mismatches: 58, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
157 26 0.12
158 167 0.77
159 23 0.11
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTCAGCCGGCCGAAGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTGCC
GATCCCGCTGCCACAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAC
CCAACCCACGAAATGAGCATACGAACA
Found at i:29139951 original size:26 final size:26
Alignment explanation
Indices: 29139915--29139967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29139905 CCGGTCCGAT
*
29139915 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29139941 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29139967 C
1 C
29139968 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29139988 original size:500 final size:501
Alignment explanation
Indices: 29138940--29140018 Score: 1432
Period size: 501 Copynumber: 2.2 Consensus size: 501
29138930 GGCTCAAAAT
* * **
29138940 CTTAGATTGGGAATGAACTCCGTATGCCTAAG-CTAACCCACGAAACGAGTGTACGGGCGCTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAACGTACGGGCGCTCAG
* * * * * *
29139004 CCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCTCGATCCCCCCTGTGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCACAAGCAGAGGATCAGCCCGATCCCCCCTGCGGGCTGTCGATCC
* *
29139069 TGCTACCGCAACCCTTGGTCTGATCTAATCTTAGACTGGGAATGAACCCCGTATGCATAAGTCAA
130 TGCTACCGCAACCCTCGGTCAGATCTAATCTTAGACTGGGAATGAACCCCGTATGCATAAGTCAA
* * * ** *
29139134 CCCATGAAACGAGCGTGCGGGCATTGACCCGGTCGAAGAGGCATAATACGTAAGTCGAGGATCGG
195 CCCACGAAACGAGCATACGAACATTGACCCGGCCGAAGAGGCATAATACGTAAGTCGAGGATCGG
* * * *
29139199 CTCGGTCCCCCTTTACGTGCTGCCACTCCCGCTGTCACAACCCTCGGTCCGACTGGGGCTTAGAC
260 CCCGGTCCCCCTCTACGTGCTGCCACTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGAC
* * * * * *
29139264 ATGGAATGAATTCCCTATGCCTAAGCTAACTCACAAAATGGGCATGCGGGCGCTCAGCCGATCAG
325 ATGGAATAAAATCCCTATGCCTAACCCAACCCACAAAATGGGCATACGGGCGCTCAGCCGATCAG
* *
29139329 AGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTACCGATCCTACTGCCG
390 AGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCG
* *
29139394 CAACCCTCGATCCAATCTGATCTTAGATTAGGAATGAACTCCGTATG
455 CAACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCGTATG
* * * *
29139441 CTTAGACTGAGGATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGC
* *
29139506 CGACCGGAGAGGCATAATGCACAAG-ATGAGGATCAGCCCGATCCCCCCTGCGGGCTGTCGATCT
66 CGACCGGAGAGGCAGAATGCACAAGCA-GAGGATCAGCCCGATCCCCCCTGCGGGCTGTCGATCC
* * * *
29139570 TGCTACCGTAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGCACTCCGTATGCATAAGTCA
130 TGCTACCGCAACCCTCGGT-CAGATCTAATCTTAGACTGGGAATGAACCCCGTATGCATAAGTCA
* * * *
29139634 ACCCACGAAATGAGCATACGAACATTGAGCTGGCCGAAGAGGCATAATGCGTAAG-CTGAGGATC
194 ACCCACGAAACGAGCATACGAACATTGACCCGGCCGAAGAGGCATAATACGTAAGTC-GAGGATC
**
29139698 GGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAA-CCTCGATCCGACTGGGGCTTAG
258 GGCCCGGTCCCCCTCTACGTGCTGCCACTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAG
** * *
29139762 ACATGGAATAAAATCCCTATGCCTAACCCAACCCATGAAATGGGCATACGGTCGCTCAGCCG-GC
323 ACATGGAATAAAATCCCTATGCCTAACCCAACCCACAAAATGGGCATACGGGCGCTCAGCCGATC
* * * * * * *
29139826 TGGAGAGGCAGAATGCGAAAGTCGGGGATTGGCCCGGTCCTCCCTGCGTGCTGCTGATCCTGCTG
388 -AGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTG
* * ** * *
29139891 TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
452 CCGCAACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCGTATG
* ** **
29139941 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGATTGTACGGGCGCTCAAT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGC
*
29140006 CGGCCGGAGAGGC
66 CGACCGGAGAGGC
29140019 CGATCGGAAA
Statistics
Matches: 498, Mismatches: 75, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
499 1 0.00
500 241 0.48
501 253 0.51
502 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (501 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCACAAGCAGAGGATCAGCCCGATCCCCCCTGCGGGCTGTCGATCCT
GCTACCGCAACCCTCGGTCAGATCTAATCTTAGACTGGGAATGAACCCCGTATGCATAAGTCAAC
CCACGAAACGAGCATACGAACATTGACCCGGCCGAAGAGGCATAATACGTAAGTCGAGGATCGGC
CCGGTCCCCCTCTACGTGCTGCCACTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACA
TGGAATAAAATCCCTATGCCTAACCCAACCCACAAAATGGGCATACGGGCGCTCAGCCGATCAGA
GAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGC
AACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:29140669 original size:158 final size:157
Alignment explanation
Indices: 29140421--29141239 Score: 557
Period size: 158 Copynumber: 5.2 Consensus size: 157
29140411 CCGACTGAGG
* * ** * * * * *
29140421 CTTAGACAT-GGAATGAACTCCCTAAGCCTAAGC-CAACCGGTGAAACGGGTGTGCGGTCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCACTGA
* * ** * * * * *
29140484 GTCGATCGGAGAGGCAGAATGTGCAAGTCGGGGACCGGCTTGATCCCCTCTGCGTTCTGTCGATC
64 CTCGATCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATC
* ** **
29140549 CTGCTGTAGCAACCCTTGGTATGGTCCGAT
129 CTGCTGCA-CAACCCTCAGTCCGGTCCGAT
* * * *
29140579 CTTAGATTGGGAATGAACTCTGTATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCGCTGACC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCACTGACT
* * * * *
29140644 CGATCGAAGAGGCATAATGCACAAGTCGACGATCGGCCCGGTACCCCTCTGCGTGCTGTTGGTCC
66 CGATCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCTGGT-CCCCTCTGCGTGCTGTCGATCC
* * * **
29140709 CGCTGCCACAGCCCTCAGTCCGG-CTGGGG
130 TGCTG-CACAACCCTCAGTCCGGTC-CGAT
* *
29140738 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCACTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCACTGA
* * * * *
29140801 GTCGGTCGGAGAGGTAGAATGCACAAGTCGAGGATCGGCCTGGTCCCCCCT-CTGTGCTGTCGAT
64 CTCGATCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCTGGTCCCCTCTGC-GTGCTGTCGAT
* * *
29140865 CCTGCTACCTCAACCCTCAGTCCGGTCTGAT
128 CCTGCT-GCACAACCCTCAGTCCGGTCCGAT
* * *
29140896 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGACT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCACTGACT
* * * * * * *
29140961 CGATCGAAGAGGCATAATGCCCAAG-CCAGGGATCAGCCCGGTCCCCCTCTACGTGCTG-CCAGT
66 CGATCGAAGAGGCAGAATGCACAAGTCGA-GGATCGGCCTGGT-CCCCTCTGCGTGCTGTCGA-T
* * * **
29141024 CCCGCTGCCACAACCCTC-GATCC-GACTGGGG
128 CCTGCTG-CACAACCCTCAG-TCCGGTC-CGAT
* * * * * ** *
29141055 CTTAGACAT-GGAATGAACTCCCTATGCCCAAGC-CAACACACGAAACGGGCGTGCGGGTGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCACT-G
** * ** * * * * * * *
29141118 AC-CGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATTGAT
63 ACTCGATCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGAT
* * ** * * *
29141182 CCTACTATCGTAACCATCGGTCCGGTCTGAT
128 CCTGCT-GCACAACCCTCAGTCCGGTCCGAT
*
29141213 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
29141240 TTAGACTGGG
Statistics
Matches: 514, Mismatches: 119, Indels: 56
0.75 0.17 0.08
Matches are distributed among these distances:
157 7 0.01
158 261 0.51
159 237 0.46
160 9 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCACTGACT
CGATCGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATCCT
GCTGCACAACCCTCAGTCCGGTCCGAT
Found at i:29140768 original size:159 final size:157
Alignment explanation
Indices: 29140380--29141111 Score: 636
Period size: 158 Copynumber: 4.6 Consensus size: 157
29140370 CCACTCTGTA
* * * * *
29140380 TGCTGTCGGTCCCACTACCACAACCCTC-GATCCGACTGAGGCTTAGACATGGAATGAACTCCCT
1 TGCTGTCGGTCCCGCTGCCACAACCCTCAG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCGT
* *** * * * * * * * * **
29140444 AAGCCTAAGCCAACCGGTGAAACGGGTGTGCGGTCGCTCAGTCGATCGGAGAGGCAGAATGTGCA
65 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGACTCGATCGAAGAGGCATAATGCACA
* * ** *
29140509 AGTCGGGGACCGGCTTGATCCCCTCTGCG
130 AGTCGAGGATCGGCCCGGTCCCCTCT-CG
* * * * ** ** * ** * *
29140538 TTCTGTCGATCCTGCTG-TAGCAACCCTTGGTATGG-TCCGATCTTAGA-TTGGGAATGAACTCT
1 TGCTGTCGGTCCCGCTGCCA-CAACCCTCAGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCC
* * *
29140600 GTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCGCTGACCCGATCGAAGAGGCATAATGC
63 GTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCACTGACTCGATCGAAGAGGCATAATGC
*
29140664 ACAAGTCGACGATCGGCCCGGTACCCCTCTGCG
127 ACAAGTCGAGGATCGGCCCGGT-CCCCTCT-CG
* *
29140697 TGCTGTTGGTCCCGCTGCCACAGCCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
1 TGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * * *
29140762 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGTCGGAGAGGTAGAATGCACAA
66 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGACTCGATCGAAGAGGCATAATGCACAA
* *
29140827 GTCGAGGATCGGCCTGGTCCCCCCTCTG
131 GTCGAGGATCGGCCCGGTCCCCTCTC-G
* * * * **
29140855 TGCTGTCGATCCTGCTACCTCAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCG
1 TGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCG
* * * *
29140918 TATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGACTCGATCGAAGAGGCATAATGCCC
64 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGACTCGATCGAAGAGGCATAATGCAC
* *
29140983 AAG-CCAGGGATCAGCCCGGTCCCCCTCTACG
129 AAGTCGA-GGATCGGCCCGGT-CCCCTCT-CG
* * * *
29141014 TGCTGCCAGTCCCGCTGCCACAACCCTC-GATCCGACTGGGGCTTAGACATGGAATGAACTCCCT
1 TGCTGTCGGTCCCGCTGCCACAACCCTCAG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCGT
* * *
29141078 ATGCCCAAGCCAACACACGAAACGGGCGTGCGGG
65 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
29141112 TGCTCAACCG
Statistics
Matches: 454, Mismatches: 101, Indels: 37
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.02
158 231 0.51
159 209 0.46
160 6 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
TGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGACTCGATCGAAGAGGCATAATGCACAA
GTCGAGGATCGGCCCGGTCCCCTCTCG
Found at i:29141002 original size:317 final size:317
Alignment explanation
Indices: 29140380--29141239 Score: 1098
Period size: 317 Copynumber: 2.7 Consensus size: 317
29140370 CCACTCTGTA
* * *
29140380 TGCTGTCGGTCCCACTACCACAACCCTCGATCCGACTGAGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* *** * * *
29140445 AGCCTAAGCCAACCGGTGAAACGGGTGTGCGGTCGCTCAGTCGATCGGAGAGGCAGAATGTGCAA
66 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGTGCAA
* * * * * ** * * **
29140510 GTCGGGGACCGGCTTGATCCCCTCTGCGTTCTGTCGATCCTGCTGTAGCAACCCTTGGTATGGTC
131 GTCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTACATCAACCCTCGGTCCGGTC
* * * * *
29140575 CGATCTTAGATTGGGAATGAACTCTGTATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCGCT
196 TGATCTTAGACTGGGAATGAACTCCGTATGCATAACTCAACCCATGAAACGAGCGTGCGGGCACT
* * *
29140640 GACCCGATCGAAGAGGCATAATGCACAAGTCGACGATCGGCCCGGTACCCCTCTGCG
261 GACCCGATCGAAGAGGCATAATGCACAAGCCGACGATCAGCCCGGTACCCCTCTACG
* * * *
29140697 TGCTGTTGGTCCCGCTGCCACAGCCCTC-AGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGT
1 TGCTGTCGGTCCCGCTGCCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* * * **
29140761 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGTCGGAGAGGTAGAATGCACA
65 ATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGTGCA
* * *
29140826 AGTCGAGGATCGGCCTGGTCCCCCCT-CTGTGCTGTCGATCCTGCTACCTCAACCCTCAGTCCGG
130 AGTCGAGGATCGGCCTGATCCCCCCTGC-GTGCTGTCGATCCTGCTACATCAACCCTCGGTCCGG
*
29140890 TCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCA
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCATAACTCAACCCATGAAACGAGCGTGCGGGCA
* * * *
29140955 CTGACTCGATCGAAGAGGCATAATGCCCAAGCC-AGGGATCAGCCCGGTCCCCCTCTACG
259 CTGACCCGATCGAAGAGGCATAATGCACAAGCCGA-CGATCAGCCCGGTACCCCTCTACG
* *
29141014 TGCTGCCAGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * ** *
29141079 TGCCCAAGCCAACACACGAAACGGGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGTGCAA
66 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGTGCAA
* * * * * * * *
29141144 GCCGAGGATCGACCCGATCCCCCCTGCGTGCTATTGATCCTACTATCGT-AACCATCGGTCCGGT
131 GTCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTA-CATCAACCCTCGGTCCGGT
29141208 CTGATCTTAGACTGGGAATGAACTCCGTATGC
195 CTGATCTTAGACTGGGAATGAACTCCGTATGC
29141240 TTAGACTGGG
Statistics
Matches: 464, Mismatches: 73, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
316 3 0.01
317 457 0.98
318 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (317 bp):
TGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGTGCAA
GTCGAGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTACATCAACCCTCGGTCCGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCATAACTCAACCCATGAAACGAGCGTGCGGGCACT
GACCCGATCGAAGAGGCATAATGCACAAGCCGACGATCAGCCCGGTACCCCTCTACG
Found at i:29141145 original size:159 final size:157
Alignment explanation
Indices: 29140380--29141175 Score: 606
Period size: 159 Copynumber: 5.0 Consensus size: 157
29140370 CCACTCTGTA
* * * *
29140380 TGCTGTCGGTCCCACTACCACAACCCTC-GATCCGACTGAGGCTTAGACATGGAATGAACTCCCT
1 TGCTGTC-GTCCCGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAACTCCGT
* *** * * * * ** * **
29140444 AAGCCTAAGCCAACCGGTGAAACGGGTGTGCGGTCGCTCAGTCGATCGGAGAGGCAGAATGTGCA
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGCACA
* * * ** * *
29140509 AGTCGGGGACCGGCTTGATCCCCTCTGCG
129 AGCCGAGGATCGGCCCGGTCCCCCCTGCG
* * * ** ** * * ** * *
29140538 TTCTGTCGATCCTGCTG-TAGCAACCCTTGGTATG-GTCCGATCTTAGA-TTGGGAATGAACTCT
1 TGCTGTCG-TCCCGCTGCCA-CAACCCTCAGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCC
* * * * * * *
29140600 GTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCGCTGACCCGATCGAAGAGGCATAATGC
62 GTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGC
* * *
29140664 ACAAGTCGACGATCGGCCCGGTACCCCTCTGCG
126 ACAAGCCGAGGATCGGCCCGGT-CCCCCCTGCG
* * *
29140697 TGCTGTTGGTCCCGCTGCCACAGCCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
1 TGCTG-TCGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
** *
29140762 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGTCGGAGAGGTAGAATGCACAA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGCACAA
* *
29140827 GTCGAGGATCGGCCTGGTCCCCCCT-CTG
130 GCCGAGGATCGGCCCGGTCCCCCCTGC-G
* * * * **
29140855 TGCTGTCGATCCTGCTACCTCAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCG
1 TGCTGTCG-TCCCGCTGCCACAACCCTCAGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCG
* * * * * * * *
29140918 TATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACT-GACTCGATCGAAGAGGCATAATGCC
63 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC-CGGTCGGAGAGGCAGAATGCA
* *
29140982 CAAGCC-AGGGATCAGCCCGGTCCCCCTCTACG
127 CAAGCCGA-GGATCGGCCCGGTCCCCC-CTGCG
* *
29141014 TGCTGCCAGTCCCGCTGCCACAACCCTC-GATCCGACTGGGGCTTAGACATGGAATGAACTCCCT
1 TGCTGTC-GTCCCGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAACTCCGT
* * * ** * **
29141078 ATGCCCAAGCCAACACACGAAACGGGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGTGCA
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGCACA
* *
29141143 AGCCGAGGATCGACCCGATCCCCCCTGCG
129 AGCCGAGGATCGGCCCGGTCCCCCCTGCG
29141172 TGCT
1 TGCT
29141176 ATTGATCCTA
Statistics
Matches: 501, Mismatches: 111, Indels: 52
0.75 0.17 0.08
Matches are distributed among these distances:
157 10 0.02
158 239 0.48
159 240 0.48
160 12 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
TGCTGTCGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGCACAAG
CCGAGGATCGGCCCGGTCCCCCCTGCG
Found at i:29141242 original size:26 final size:26
Alignment explanation
Indices: 29141213--29141317 Score: 140
Period size: 26 Copynumber: 4.0 Consensus size: 26
29141203 CCGGTCTGAT
29141213 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29141239 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
29141265 CCTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29141291 CTTAGCCAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29141317 C
1 C
29141318 CTAAGCCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 67 0.99
27 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.