Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 311 of 402
Found at i:29141583 original size:158 final size:157
Alignment explanation
Indices: 29141301--29141782 Score: 490
Period size: 158 Copynumber: 3.1 Consensus size: 157
29141291 CTTAGCCATG
* * * *
29141301 GAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGA
* * * *
29141366 GGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCC-CT-TATGTGCTGTCAATCTTGCTGCCGC
66 GGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCTCTGTA--TGCTGTCGATCCTGCTGCCGC
*
29141429 AACCCTCGATCCGGTCTGATCTTAGACTAT
128 AACCCTCGGTCCGGTCTGATCTTAGACTAT
* * * * * * *
29141459 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCAGCCAAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGA
* * * * * * *
29141524 GGCATAATGCGCAAGCCTGGGATCAGCCCGGTCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAA
66 GGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCTCTGTATGCTGTCGATCCTGCTGCCGCAA
* * * *
29141589 CCCTCGGGCC--ACTGGAGCTTACAC-AT
130 CCCTCGGTCCGGTCT-GATCTTAGACTAT
* * *
29141615 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGCGCTCAGCTGGTCAGA
1 -GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCAGCCGGCCAGA
* * * * * *
29141679 GAGGTAGAATGCGCAAGCCGAGGATCGGCTCGGGCCCCTCTGTGTGCTGTCGATCCTGCAGTCGC
64 GAGGCAGAATGCGCAAGCCG-GGATCGGCCCGGTCCCCTCTGTATGCTGTCGATCCTGCTGCCGC
* * **
29141744 AACTCTCGGTCCGGTCCGATCTTAGACTGG
128 AACCCTCGGTCCGGTCTGATCTTAGACTAT
29141774 GAATGAACT
1 GAATGAACT
29141783 TTGTATGCTT
Statistics
Matches: 256, Mismatches: 59, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 6 0.02
157 119 0.46
158 127 0.50
159 3 0.01
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGA
GGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCTCTGTATGCTGTCGATCCTGCTGCCGCAAC
CCTCGGTCCGGTCTGATCTTAGACTAT
Found at i:29141752 original size:157 final size:156
Alignment explanation
Indices: 29141297--29141752 Score: 463
Period size: 157 Copynumber: 2.9 Consensus size: 156
29141287 TATGCTTAGC
* *
29141297 CATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG-TCGGCC
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT-GGCC
* * * * * *
29141361 GGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCC-CTTATGTGCTGTCAATCTTGCTG
65 AGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCTC-TGTGTGCTGTCGATCCTGCTG
** * * *
29141425 CCGCAACCCTCGATCCGGTCTGATCTTAGA
128 CCGCAACCCTCGGGCC-GACTGAGCTTACA
* * * * * **
29141455 CTAT-GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCAGCC
1 C-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCC
* * * ** * * *
29141519 AAAGAGGCATAATGCGCAAGCCTGGGATCAGCCCGGTCCCCTCTGCATGCTGCCGGTCCCGCTGC
65 AGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTGC
*
29141584 CACAACCCTCGGGCC-ACTGGAGCTTACA
129 CGCAACCCTCGGGCCGACT-GAGCTTACA
* *
29141612 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGCGCTCAGCTGGTC
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCAGCTGGCC
* * * * *
29141676 AGAGAGGTAGAATGCGCAAGCCGAGGATCGGCTCGGGCCCCTCTGTGTGCTGTCGATCCTGCAGT
65 AGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTGC
*
29141741 CGCAACTCTCGG
129 CGCAACCCTCGG
29141753 TCCGGTCCGA
Statistics
Matches: 237, Mismatches: 54, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
156 6 0.03
157 117 0.49
158 111 0.47
159 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCA
GAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTGCCG
CAACCCTCGGGCCGACTGAGCTTACA
Found at i:29141814 original size:26 final size:26
Alignment explanation
Indices: 29141764--29141816 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29141754 CCGGTCCGAT
**
29141764 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29141790 CTTAGACTGGGGATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29141816 C
1 C
29141817 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29142523 original size:26 final size:26
Alignment explanation
Indices: 29142485--29142535 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29142475 GGCTCAAAAT
29142485 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
29142511 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
29142536 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:29144330 original size:459 final size:460
Alignment explanation
Indices: 29143259--29144623 Score: 2507
Period size: 459 Copynumber: 3.0 Consensus size: 460
29143249 GTGGGTTCAA
29143259 GCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
29143324 CCTAAGCCTTTATGTGAAATTTCGTGGCAAGAAGACCCGTTTTCTATTTTTTACGATTTTTGAAA
66 CCTAAGCCTTCATGTGAAGTTTCGTGGCAAGAAGACCCGTTTTCTATTTTTCACGATTTTTGAAA
* *
29143389 CTTTTAACGGTTCGAGATTTTTAAAAATTTTTTTACAAAGAGTTTTGTCCCCAAATTTGGTAGAG
131 CTTTTAACGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAG
* * *
29143454 GTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTTTAGCTAAAAACCCAAAGTGGAGAAGA
196 GTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTTCAACTAAAAACCCGAAGTGGAGAAGA
* * *
29143519 TTTTGTGACGTTTGAAAAAAGTATCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTA
261 TTTTGTGACGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
*
29143584 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGAATAGGGATAGGGGGCCAA
326 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGAAGAGGGATAGGGGGCCAA
29143649 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGCCCCCTAAGCCTTTT
391 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGCCCCCTAAGCCTTTT
29143714 TTATG
456 TTATG
*
29143719 GCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATATAATGGTCC
1 GCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
*
29143784 CCTAAGCCTTCATGTGAAGTTTCGTGGCAAGAAGACTCGTTTTCTATTTTTCACGATTTTTGAAA
66 CCTAAGCCTTCATGTGAAGTTTCGTGGCAAGAAGACCCGTTTTCTATTTTTCACGATTTTTGAAA
29143849 CTTTTAACGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAG
131 CTTTTAACGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAG
*
29143914 GTGATCCTTGTATTTTTGTTAGCATGCACAAAACAATTTCAACTAAAAACCCGAAGTGGAGAAGA
196 GTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTTCAACTAAAAACCCGAAGTGGAGAAGA
29143979 TTTTGTGACGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
261 TTTTGTGACGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
29144044 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGAAGAGGGAT-GGGGGCCAA
326 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGAAGAGGGATAGGGGGCCAA
29144108 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGCCCCCTAAGCCTTTT
391 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGCCCCCTAAGCCTTTT
29144173 TTATG
456 TTATG
29144178 GCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
*
29144243 CCTAAGCCTTCATGTGAAGTTTCATGGCAAGAAGACCCGTTTTCTATTTTTCACGATTTTTGAAA
66 CCTAAGCCTTCATGTGAAGTTTCGTGGCAAGAAGACCCGTTTTCTATTTTTCACGATTTTTGAAA
29144308 CTTTTAACGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAG
131 CTTTTAACGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAG
29144373 GTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTTCAACTAAAAACCCGAAGTGGAGAAGA
196 GTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTTCAACTAAAAACCCGAAGTGGAGAAGA
29144438 TTTTGTGACGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
261 TTTTGTGACGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
* *
29144503 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAAGAGGGATAGGGGGCCAA
326 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGAAGAGGGATAGGGGGCCAA
* * * * *
29144568 TATAAGGGCGAAGTACCAGCACCCATCGCAGATTATGTGCGCACACCCCGGCCCCC
391 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC-CCCCCGCCCCC
29144624 AAATCGCCTG
Statistics
Matches: 877, Mismatches: 26, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
459 453 0.52
460 414 0.47
461 10 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (460 bp):
GCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
CCTAAGCCTTCATGTGAAGTTTCGTGGCAAGAAGACCCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTAACGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAG
GTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTTCAACTAAAAACCCGAAGTGGAGAAGA
TTTTGTGACGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGAAGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGCCCCCTAAGCCTTTT
TTATG
Found at i:29144690 original size:11 final size:11
Alignment explanation
Indices: 29144659--29144691 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
29144649 CGGTTAGGCT
29144659 CTCCGACGATG
1 CTCCGACGATG
29144670 CTCC-AGCGATG
1 CTCCGA-CGATG
29144681 CTCCGACGATG
1 CTCCGACGATG
29144692 GTGCCCCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:29146347 original size:157 final size:158
Alignment explanation
Indices: 29146015--29146462 Score: 417
Period size: 157 Copynumber: 2.9 Consensus size: 158
29146005 GCGTAGACGT
* * * * **
29146015 GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAA-CGAGCGTGC-GGGGCTCAGCCGACTGAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAG-GCGTGCAGGCGCTCAGCCGACCAAA
* * * * * * * ** ** *** *
29146078 GAAGTAGAATGCGCAAGCAGGGGAT-GGCCCG-TCCCCCCTGTGTGCTATCGATCTTGCTGCCGC
65 GAGGCAGAATACGCAAGCCGGGAATCAGCCCGATCCCCTCTGCATGCTGCCGATCCCACTGCCAC
* * **
29146141 AACCCTCGGTCCGATCT-GATCTTAGACTG
130 AACCCTCAGACCGA-CTGGGGCTTAGACTG
* * * * * **
29146170 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT-GAGCGTGCGGGCGCTGAGCCGATCGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAG-GCGTGCAGGCGCTCAGCCGACCAAA
* * * * *
29146234 TAGGCATAATGCGCAAGCC-GGAATCGGCCCGATCCCCTCTGCATGCTGCCGGTCCCACTGCCAC
65 GAGGCAGAATACGCAAGCCGGGAATCAGCCCGATCCCCTCTGCATGCTGCCGATCCCACTGCCAC
29146298 AACCCTCAGACCGACTGGGGCTTAGACAT-
130 AACCCTCAGACCGACTGGGGCTTAGAC-TG
*
29146327 GGAATGTACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCAGGCGCTCAGCCGACCAAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCAGGCGCTCAGCCGACCAAAG
* * ** *
29146392 AGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
66 AGGCAGAATACGCAAGCCGGGAATCAGCCCGATCCCCTCTGCATGCTGCCGATCCCACTGCCACA
29146457 ACCCTC
131 ACCCTC
29146463 GGTCCAGTCC
Statistics
Matches: 240, Mismatches: 45, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
155 46 0.19
156 35 0.15
157 112 0.47
158 47 0.20
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.17
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCAGGCGCTCAGCCGACCAAAG
AGGCAGAATACGCAAGCCGGGAATCAGCCCGATCCCCTCTGCATGCTGCCGATCCCACTGCCACA
ACCCTCAGACCGACTGGGGCTTAGACTG
Found at i:29146517 original size:26 final size:26
Alignment explanation
Indices: 29146476--29146528 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29146466 CCAGTCCGAT
29146476 CTTAGACTGGGAATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
29146502 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCTATATG
29146528 C
1 C
29146529 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:29147816 original size:316 final size:316
Alignment explanation
Indices: 29147222--29147817 Score: 686
Period size: 316 Copynumber: 1.9 Consensus size: 316
29147212 AACTCCGTAT
* * * *
29147222 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACAAAACGAGCGTGTGGGTACTCAA
* * * **
29147287 CCGGCCAGAGAGGCAGAATGCATAAGTCGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCT
66 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGATCAGCCCGATCCCCCCGGCATGCTACCGATCCT
* * * * * * *
29147352 ATTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAGC
131 ACTGCCACAACCCTCGATCCGAGCTGATCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAAC
* * * * * * * **
29147417 CCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAGTGCGCAAGCCGGGGATCGGC
196 CCACGAAACGAGCGTGCGGGCACTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAAC
29147482 CTGGTCCCCCTCTGCGTGCTGTTGGTCCCGCTGCCATAACCCTCGGTCTGGCTAGG
261 CTGGTCCCCCTCTGCGTGCTGTTGGTCCCGCTGCCATAACCCTCGGTCTGGCTAGG
* *
29147538 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCT-CGAAAC-AGGCGTGTGGGTACTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCTACAAAACGA-GCGTGTGGGTACTC
** * * **
29147601 AACCGGCTGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCCGGTCCCCCCGGTGTGCTACCGATC
64 AACCGGCCAGAGAGGCAGAATGCACAAGCCGGGATCAGCCCGATCCCCCCGGCATGCTACCGATC
* * * *
29147666 AC-GCTGCCACAACCCTTGGTCTG-GCTG-TGGCTTAGACAT-GGAATGAACTCCCTATG-ACTA
129 -CTACTGCCACAACCCTCGATCCGAGCTGAT--CTTAGAC-TGGGAATGAACTCCCTATGCA-TA
* * * * *
29147726 AGCCAACCCACGAAACGGGCGTGCAGGGCACTCAACTAGCTGGAGAGGCAGAATGCGCAAGCTGG
189 AGCCAACCCACGAAACGAGCGTGC-GGGCACTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCGG
29147791 GGATCAACCTGGTCCCCCT-TGCGTGCT
253 GGATCAACCTGGTCCCCCTCTGCGTGCT
29147818 TCGATCCTGC
Statistics
Matches: 230, Mismatches: 42, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
314 1 0.00
315 5 0.02
316 172 0.75
317 52 0.23
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACAAAACGAGCGTGTGGGTACTCAA
CCGGCCAGAGAGGCAGAATGCACAAGCCGGGATCAGCCCGATCCCCCCGGCATGCTACCGATCCT
ACTGCCACAACCCTCGATCCGAGCTGATCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAAC
CCACGAAACGAGCGTGCGGGCACTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAAC
CTGGTCCCCCTCTGCGTGCTGTTGGTCCCGCTGCCATAACCCTCGGTCTGGCTAGG
Found at i:29147858 original size:158 final size:156
Alignment explanation
Indices: 29147223--29147880 Score: 592
Period size: 157 Copynumber: 4.2 Consensus size: 156
29147213 ACTCCGTATG
* * ** *
29147223 CTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAAC
* ** * *
29147288 CGGCCAGAGAGGCAGAATGCATAAG-TCGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGCTCGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
** * * * *
29147352 ATTGCCGCAACCCTCGATCCGATCTGAT
130 GCTGCCACAACCCTCGGTCTG-GCTGAT
* * * * * * * * *
29147380 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAGCCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAAC
* * * * * * *
29147445 CGGCCGAAGAGGCATAGTGCGCAAGC-CGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTTGGTC
65 CGGCCGGAGAGGCAGAATGCGCAAGCTC-GGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATC
* * **
29147509 CCGCTGCCATAACCCTCGGTCTGGCTAGGG
128 CTGCTGCCACAACCCTCGGTCTGGCT-GAT
* * * *
29147539 CTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCTCGAAAC-AGGCGTGTGGGTACTCAA
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGTGGGCACTCAA
* * * **
29147603 CCGGCTGGAGAGGCAGAATGCGCAAGC-CGGGATCAGCCCGGTCCCCCCGGTGTGCTACCGATCA
64 CCGGCCGGAGAGGCAGAATGCGCAAGCTCGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC-
*
29147667 C-GCTGCCACAACCCTTGGTCTGGCTG-T
128 CTGCTGCCACAACCCTCGGTCTGGCTGAT
* * * *
29147694 GGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACGGGCGTGCAGGGCACTC
1 --CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-TGGGCACTC
** * * * * *
29147759 AACTAGCTGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCTGGTCCCCCTTGCGTGCT-TCGAT
62 AACCGGCCGGAGAGGCAGAATGCGCAAGCTCGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGAT
* * *
29147823 CCTGCTACCGCACCCCTCGGTCTGGTCTGAT
127 CCTGCTGCCACAACCCTCGGTCTGG-CTGAT
29147854 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
29147881 TTAGATTGGG
Statistics
Matches: 403, Mismatches: 81, Indels: 33
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.00
157 155 0.38
158 117 0.29
159 127 0.32
160 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAACC
GGCCGGAGAGGCAGAATGCGCAAGCTCGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCTGGCTGAT
Found at i:29147890 original size:26 final size:26
Alignment explanation
Indices: 29147854--29147906 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29147844 CTGGTCTGAT
29147854 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
29147880 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29147906 C
1 C
29147907 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29148251 original size:26 final size:26
Alignment explanation
Indices: 29148222--29148271 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
29148212 TGATCCGATC
* *
29148222 TTAGAC-TGGGAATGAACTCTGTATGT
1 TTAGACAT-GGAAGGAACTCCGTATGT
29148248 TTAGACATGGAAGGAACTCCGTAT
1 TTAGACATGGAAGGAACTCCGTAT
29148272 ACCTAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACATGGAAGGAACTCCGTATGT
Found at i:29148354 original size:367 final size:354
Alignment explanation
Indices: 29147668--29148409 Score: 826
Period size: 367 Copynumber: 2.1 Consensus size: 354
29147658 TACCGATCAC
* * * * *
29147668 GCTGCCACAACCCTTGGTCTGGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGCCTGGGGCTTAGACATGGAATGAACTACCTATGACTAAGCCAAC
* * * **
29147733 CCACGAAACGGGCGTGCAGGGCACTCAACTAGCTGGAGAGGCAGAATGCGCAAGCTGGGGATCAA
66 CAACGAAACGAGCGTGCAGGGCACTCAACGAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCAA
* * * *
29147798 CCTGGTCCCCCTTGCGTGCTTCGATCCTGCTACCGCACCCCTCGGTCTGGTCTGATCTTAGACTG
131 CCCGGTCCCCCCTGCGTGCTTCGATCCTGCTACCGCACCCCTCGGTCTGATCCGATCTTAGACTG
* * * * * ** *
29147863 GGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTTAACCCACGAAACGA
196 GGAATGAACTCCGTATGCTTAGAATGGGAAGGAACTCCGTATACCTAAGCCAACCCACAAAACGA
* ** * *
29147928 GCATACAGGTGCTCAATCGGTCGGAGAGGCATAATGCACAAACTGAGGATCAGCCCGATCCCCCT
261 GCATACAGGTGCTCAACCGACCGGAGAGGCAGAAAGCACAAACTGAGGATCAGCCCGATCCCCC-
*
29147993 CTGCGTGCTGTTGATCCCGTTGCCGGTCCT
325 CTGCGTGCTGTCGATCCCGTTGCCGGTCCT
* * * * *
29148023 GCTGTCACAACCCTCGGTCCGCCTGGGGCTTAGACATGGAATGAACTACGTATGCCTTAGCCAAT
1 GCTGCCACAACCCTCGGTCCGCCTGGGGCTTAGACATGGAATGAACTACCTATGACTAAGCCAAC
* * *
29148088 CAACGAAACGAGCGTGCA-GGCACTCAGTCGA-CTGGAGAGGCAGAATGCGTAAGCCAGGGATCG
66 CAACGAAACGAGCGTGCAGGGCACTCA-ACGAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCA
*
29148151 ACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCTTGCTGCCACAACCCTCGGTCTGAT
130 ACCCGGTCCCCCCTGCGTGCT-TCGAT-C--CTGCT--AC---C-G-CAC--CCCTCGGTCTGAT
* *
29148216 CCGATCTTAGACTGGGAATGAACTCTGTATGTTTAGACAT-GGAAGGAACTCCGTATACCTAAGC
182 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGAAGGAACTCCGTATACCTAAGC
* * * * * *
29148280 CAACCCACAAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAAAGCGCAAGCTGGGGAT
246 CAACCCACAAAACGAGCATACAGGTGCTCAACCGACCGGAGAGGCAGAAAGCACAAACTGAGGAT
* *** *
29148345 C-GACCCGATCCCCCCTGCGTTCTGTCGATCCTACTGCTGGTCCT
311 CAG-CCCGATCCCCCCTGCGTGCTGTCGATCCCGTTGCCGGTCCT
* * *
29148389 ACTGCCGCAACCCTCGATCCG
1 GCTGCCACAACCCTCGGTCCG
29148410 ATCTGATCTT
Statistics
Matches: 317, Mismatches: 54, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
354 55 0.17
355 78 0.25
356 1 0.00
358 5 0.02
360 1 0.00
363 1 0.00
364 1 0.00
365 3 0.01
366 42 0.13
367 129 0.41
368 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (354 bp):
GCTGCCACAACCCTCGGTCCGCCTGGGGCTTAGACATGGAATGAACTACCTATGACTAAGCCAAC
CAACGAAACGAGCGTGCAGGGCACTCAACGAGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCAA
CCCGGTCCCCCCTGCGTGCTTCGATCCTGCTACCGCACCCCTCGGTCTGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGAATGGGAAGGAACTCCGTATACCTAAGCCAACCCACAAAACGA
GCATACAGGTGCTCAACCGACCGGAGAGGCAGAAAGCACAAACTGAGGATCAGCCCGATCCCCCC
TGCGTGCTGTCGATCCCGTTGCCGGTCCT
Found at i:29148386 original size:196 final size:196
Alignment explanation
Indices: 29148050--29148541 Score: 651
Period size: 196 Copynumber: 2.5 Consensus size: 196
29148040 TCCGCCTGGG
* * * * * * **
29148050 GCTTAGACATGGAATGAACTACGTATGCCTTAGCCAATCAACGAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * ** *
29148115 TCGACTGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * * * *
29148180 TGCTGCTGGTCTTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTA
131 TACTGCTGGTCCTACTGCCACAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTA
29148245 T
196 T
* * * *
29148246 GTTTAGACATGGAAGGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * *
29148311 CCGACCGGAGAGGCAGAAAGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTTCTGTCGATCC
66 CCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
29148376 TACTGCTGGTCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGAGTAGGAATGAACTCCGTA
131 TACTGCTGGTCCTACTGCCACAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTA
29148441 T
196 T
* * *
29148442 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGATCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * * *
29148507 CCGACTGGACAGGTAGAATGCACAAGCTGAGGATC
66 CCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATC
29148542 AGCTCAATCC
Statistics
Matches: 253, Mismatches: 43, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
196 253 1.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
CCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TACTGCTGGTCCTACTGCCACAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTA
T
Found at i:29148948 original size:27 final size:26
Alignment explanation
Indices: 29148918--29148971 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29148908 TTGGTCCGAT
*
29148918 CTTAGATTAGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
* *
29148945 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29148971 C
1 C
29148972 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29155677 original size:158 final size:157
Alignment explanation
Indices: 29155344--29155679 Score: 388
Period size: 157 Copynumber: 2.1 Consensus size: 157
29155334 ACTCCGTATG
* * * * * *
29155344 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCATGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTTGGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
29155409 CGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTAGATCCT
66 CGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCAGCATGCTGCAGATCCT
* *
29155474 GCTACCGCAACCCTCGTCCGATCCGAA
131 GCTACCACAACCCTCATCCGATCCGAA
* * * * *
29155501 CTTAGACTGGGAATGAACTTCGTACGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTTGGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
29155566 CGGCTGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCT-AGCATGCTGCGGATCC
66 C-GCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCAGCATGCTGCAGATCC
* * *
29155630 TGCTGCCACAACCCTCAATCCCG-TCTGAT
130 TGCTACCACAACCCTC-AT-CCGATCCGAA
29155659 CTTAGACTTGGAATGAACTCC
1 CTTAGACTTGGAATGAACTCC
29155680 ATATGCTTAG
Statistics
Matches: 147, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 81 0.55
158 63 0.43
159 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
CTTAGACTTGGAATGAACTCCGTACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCAGCATGCTGCAGATCCT
GCTACCACAACCCTCATCCGATCCGAA
Found at i:29156844 original size:498 final size:506
Alignment explanation
Indices: 29155935--29156900 Score: 1209
Period size: 498 Copynumber: 1.9 Consensus size: 506
29155925 TCAGTCAACC
* * * * *
29155935 AGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTCGATCTTGCTAT
1 AGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTAC
* * * *
29156000 TGCAACCCTCAGTCCGGTCTAATCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACG
66 CGCAACCCTCAGTCCAGTCCAATCTTAGACTGGCAATGAACTCCGTATGCATAAGTCAACCCACG
* * * * *
29156065 AAACGAGCATGCGGGTGCTCAGTCGACCGTAGAAGCCGATCGGAGAGGCATAATGCGTAAGTCGA
131 AAACGAGCATAC-GGAGCTCA-TCGACCGTAGAA-CCGA--GAAGAGGCATAATGCGCAAGCCGA
* ** * *
29156130 GGATCAGCCCGATCTCTCTCTACGTGCTGTCGATCCCACTGCCGGTCCTGCTACCACAACCCTTG
191 GGATCAGCCCGATCCCTCTCTACGTGCTACCGATCCCACTGCCGGCCCTGCTACCACAACCCTCG
*
29156195 ATTCAACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTG
256 ATCCAACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTG
* * * * *
29156260 CGGGCACTCAACCGACCAAAGAGGAAGAATGTGCAAGCCACGGATTGGCCCGGTCCCTCTTGTGT
321 CGGGCACTCAACCGACCAAAGAGGAAGAATGCGCAAGCCACGGATTGGCCCGATCCCCCCTGCGT
* ** * * * *
29156325 GCTGTCGATCCTGTGCTGGTCCTACTACCACAACCCTTGGTTC-GGTCTGATCTTAGATTGGGAA
386 GCTGTCGATCCTGTACTGGTCCTACTACCACAACCCTCAGTCCAGTTC-AATCTTAGACTGGGAA
29156389 TGAACTCCGTATGCCTCATCCAACCCAAAAAATGAGCGTGCGGGTGCTTAACCGGCT
450 TGAACTCCGTATGCCTCATCCAACCCAAAAAATGAGCGTGCGGGTGCTTAACCGGCT
* *
29156446 AGAGAGGCAGAATGCGCAGGTCAGGGATCGACCCAGTCCCCCTTGCGTGCTGTCGATCCTGCTAC
1 AGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTAC
* * * *
29156511 CGCAACCCTC-GATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATATGTCAACCCAT
66 CGCAACCCTCAG-TCCAGTCCAATCTTAGACTGGCAATGAACTCCGTATGCATAAGTCAACCCAC
* * *
29156575 GAAATGAGCGTAC-GAGCTC-T-GAGC-T-G-A-CG-GAAGAGGCATAATGCGCAAGCCGAGGAT
130 GAAACGAGCATACGGAGCTCATCGACCGTAGAACCGAGAAGAGGCATAATGCGCAAGCCGAGGAT
** * * * * * * *
29156632 TGGCTCGGTCCC-CTTCTGCGTGCTACCGATCTCGCTGTCGGCCCTGCTGCCACAACCCTCGATC
195 CAGCCCGATCCCTC-TCTACGTGCTACCGATCCCACTGCCGGCCCTGCTACCACAACCCTCGATC
* * *
29156696 CGATTGGGGCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCG
259 CAACTGGGGCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* ** * *
29156760 GGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGCGGATTGGCCCGATCCCCCCTGCGTGC
323 GGCACTCAACCGACCAAAGAGGAAGAATGCGCAAGCCACGGATTGGCCCGATCCCCCCTGCGTGC
* * *
29156825 TGTCGATCCTGTACTGGTCCTGCTGCCGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGA
388 TGTCGATCCTGTACTGGTCCTACTACCACAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGA
*
29156890 ACTCTGTATGC
453 ACTCCGTATGC
29156901 TTAGACATGG
Statistics
Matches: 389, Mismatches: 62, Indels: 21
0.82 0.13 0.04
Matches are distributed among these distances:
497 2 0.01
498 247 0.63
499 3 0.01
501 2 0.01
503 1 0.00
504 1 0.00
505 1 0.00
506 3 0.01
507 1 0.00
509 5 0.01
510 1 0.00
511 122 0.31
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (506 bp):
AGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTAC
CGCAACCCTCAGTCCAGTCCAATCTTAGACTGGCAATGAACTCCGTATGCATAAGTCAACCCACG
AAACGAGCATACGGAGCTCATCGACCGTAGAACCGAGAAGAGGCATAATGCGCAAGCCGAGGATC
AGCCCGATCCCTCTCTACGTGCTACCGATCCCACTGCCGGCCCTGCTACCACAACCCTCGATCCA
ACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
ACTCAACCGACCAAAGAGGAAGAATGCGCAAGCCACGGATTGGCCCGATCCCCCCTGCGTGCTGT
CGATCCTGTACTGGTCCTACTACCACAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACT
CCGTATGCCTCATCCAACCCAAAAAATGAGCGTGCGGGTGCTTAACCGGCT
Found at i:29156912 original size:26 final size:26
Alignment explanation
Indices: 29156874--29156926 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29156864 CCAGTTCAAT
*
29156874 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29156900 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29156926 C
1 C
29156927 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29159482 original size:25 final size:26
Alignment explanation
Indices: 29159432--29159483 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
29159422 CCGATCTGAT
**
29159432 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
29159458 CTTAGACT-GGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
29159483 C
1 C
29159484 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29160459 original size:158 final size:158
Alignment explanation
Indices: 29160153--29160599 Score: 427
Period size: 158 Copynumber: 2.8 Consensus size: 158
29160143 GTGGCTCAAA
* * *
29160153 ATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCAACGAAACAAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
** * * * *
29160218 GCCGGTCGGACAGGCAGAATGCACAAGCC-AGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCAAT
66 GCCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCAGTCCCCCCTGCATGCTGTCAAT
* * * *
29160282 CCTGCTGCTACAACCCTCAGTCC-GATCCG
130 CCCGCTACCACAACCCTCAGTCCGGCT-CG
* * * * * * *
29160311 ATCTTAGACTGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGTGCTGA
1 ATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * ** * **
29160376 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCTTCTGCATGCTG-CGGT
66 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCC-CCTGCATGCTGTCAAT
** * *
29160440 CCCGCTACCACAATGCTCAGTCTGGCTGG
130 CCCGCTACCACAACCCTCAGTCCGGCTCG
** ** * * *
29160469 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTC
1 ATCTTAGAC-TGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * *
29160533 AGACGACTGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCC-GATCCCCCCTGCGTGCTGCCAA
65 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAG-TCCCCCCTGCATGCTGTCAA
29160597 TCC
129 TCC
29160600 TACTGCCGGA
Statistics
Matches: 229, Mismatches: 54, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 10 0.04
158 206 0.90
159 13 0.06
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
ATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCATGCTGTCAATC
CCGCTACCACAACCCTCAGTCCGGCTCG
Found at i:29160669 original size:26 final size:26
Alignment explanation
Indices: 29160629--29160680 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29160619 CCAGTCCAAT
*
29160629 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
29160655 TTAGATTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
29160681 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:29167484 original size:26 final size:26
Alignment explanation
Indices: 29167445--29167497 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29167435 GGCTCAAAAT
**
29167445 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACAACGTATG
29167471 CTTAGACATG-GAATGAACAACGTATG
1 CTTAGAC-TGAGAATGAACAACGTATG
29167497 C
1 C
29167498 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACAACGTATG
Found at i:29167985 original size:26 final size:26
Alignment explanation
Indices: 29167944--29167996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29167934 CCAATCTGAT
29167944 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
29167970 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29167996 C
1 C
29167997 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29168668 original size:26 final size:26
Alignment explanation
Indices: 29168639--29168688 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
29168629 TCTGATCCAA
29168639 TCTTAGACTGGGAATGAACTCCATTT
1 TCTTAGACTGGGAATGAACTCCATTT
*
29168665 TCTTAGACTGGGGATGAACTCCAT
1 TCTTAGACTGGGAATGAACTCCAT
29168689 ATGCCTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCATTT
Found at i:29169753 original size:26 final size:26
Alignment explanation
Indices: 29169717--29169769 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29169707 CCGGTCTGAT
29169717 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
29169743 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
29169769 C
1 C
29169770 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:29170374 original size:26 final size:26
Alignment explanation
Indices: 29170345--29170397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29170335 CCGGTTCGAT
*
29170345 CTTAGACT-GGGAATGAAGTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
29170371 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
29170397 C
1 C
29170398 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:29170705 original size:159 final size:158
Alignment explanation
Indices: 29170486--29170993 Score: 525
Period size: 159 Copynumber: 3.2 Consensus size: 158
29170476 GTCCTTCCTA
** * * *
29170486 CGTGCTGTCGATCCTGTTG-CTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTC
1 CGTGCTGTCGATCCTACTGTC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTC
*
29170550 GTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGTAGAATATG
65 GTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGTAGAATGTG
29170615 ATAGCCTGGGATCGACCCGATCCCCCCTTG
130 ATAGCC-GGGATCGACCCGATCCCCCCTTG
*
29170645 GGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCG
1 CGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCG
* * * * * * * * *
29170710 TATGCCTAAGTCAACCCACGGAACGAGCAT-TCGGGCACTGAGCC-AGTCGAAGAGGCATAATGC
66 TATGCCTAAGTCAACCCACGAAACGAGCGTGT-GGGCGCTCAGCCGA-CCGGAGAGGTAGAATGT
* *
29170773 G-TAAGCCGAGGATCGACCTGGT-CCCCCTCTG
129 GAT-AGCCG-GGATCGACCCGATCCCCCCT-TG
* * * * **
29170804 CGTGCTGTCGATGCC-GCTGCCACAACCATCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACT
1 CGTGCTGTCGAT-CCTACTGTCGCAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACT
* * * * * * *
29170866 CCCTATGCCTAAGCCAACCCACGAAATG-GCGTGCGGGTGCTCAACCGACCGGAGAGGTAGAATG
63 TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGTAGAATG
* * *
29170930 T-ACAAGCCGGGGATCGGCCCGATCCCCTC-TG
128 TGA-TAGCC-GGGATCGACCCGATCCCCCCTTG
29170961 CGTGCTGTCGATCCTACTGTCGCAACCCTCGGT
1 CGTGCTGTCGATCCTACTGTCGCAACCCTCGGT
29170994 GCGATCCGAT
Statistics
Matches: 283, Mismatches: 50, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 28 0.10
158 49 0.17
159 200 0.71
160 4 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (158 bp):
CGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGTAGAATGTGA
TAGCCGGGATCGACCCGATCCCCCCTTG
Found at i:29171417 original size:25 final size:26
Alignment explanation
Indices: 29171371--29171422 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
29171361 CCAGTCCGAT
29171371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29171397 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29171422 C
1 C
29171423 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29171684 original size:354 final size:348
Alignment explanation
Indices: 29170688--29172085 Score: 1272
Period size: 354 Copynumber: 4.0 Consensus size: 348
29170678 CTGGTCTGAT
* * * * *
29170688 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAGCAT-TCGGGCACTGAG
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCA-TGAACGAGCATGT-AGGCAGTCAG
* * * * * *
29170752 CC-AGTCGAAGAGGCATAATGCGTAAGCCGAGGA-TCGACCTGGTCCCCCTCTGCGTGCT--G-T
63 CCGA-CCGGAGAGGCATAATGCGTAAGCCGGGGATTAG-CCCGATCCCCCTCTGCGTGCTGCGAT
* * *
29170812 -CGATGCC-G-C--TGCCACAACCATCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
126 CCGATACCAGTCTATGCCACAACCCTCGGTCTGGCTGGAGCTTAGACATGGAATGAACTCCCTAT
* * * * * **
29170872 GCCTAAGCCAACCCACGAAATGGCGTGCGGGTGCTCAACCGACCGGAGAGGTAGAATGTACAAGC
191 GCCTAAGCCAACCCACAAAATGGCGTGCGTGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGC
* * * * *
29170937 CGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTGC-GATCC
256 CGGGGATCGGCCAGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTTCAG-TCC
* *
29171001 GATCTTAGATTAGAAATGAACTCCATATG
320 GATCTTAGACTAGGAATGAACTCCATATG
* * * * * *
29171030 CTTAGATTGGGATGAATTCCATATGCCTAAGTCAACCCACGGAACGAGCGTGTGGGC-GCTCAGC
1 CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCA-TGAACGAGCATGTAGGCAG-TCAGC
* * * *
29171094 CAACCAGAGAGGTCGGTCGAAGAGATGTAATACGTAAGCCGGGGATCAGCCCGATCCCCCTCTGC
64 CGACC-G-GA-G-AGG-C------A--TAATGCGTAAGCCGGGGATTAGCCCGATCCCCCTCTGC
* * *
29171159 GTGCTGCCGATCTC-ATTACCAGTCCTACTGCCACAACCCTCGGTTTGGCTGGGGCTTAGACGTG
116 GTGCTG-CGATC-CGA-TACCAGT-CTA-TGCCACAACCCTCGGTCTGGCTGGAGCTTAGACATG
* ** * * *
29171223 GAATGAAATCCCTATGCCTAAGCCAACCCATGAAATAGGCGTG-TTGTCACTCAGCCGACCGCAG
176 GAATGAACTCCCTATGCCTAAGCCAACCCACAAAAT-GGCGTGCGTG-CGCTCAGCCGACCGAAG
* * * * * *
29171287 AGGCAGAATGCGCATGCCGGGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGTA
239 AGGTAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCA
* * * *
29171352 GCCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
304 ACCCTCAGTTCAGTCCGATCTTAGACTAGGAATGAACTCCATATG
*
29171397 CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTGTAGGCAGTCAGCC
1 CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCATG-AACGAGCATGTAGGCAGTCAGCC
* *
29171462 GACCGGAGAGGCATAATGCGCAAGCCGGGGATTAGCCCGATCCCCCTCTACGTGCTGCAGATCCC
65 GACCGGAGAGGCATAATGCGTAAGCCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGC-GAT-CC
* * * * * *
29171527 GCTACCGGTCTTGTTGCCATAACCCTCGGTCTGGCTAGAGCTTAGACATGGAATGAACTCCGTAT
128 GATACCAGTC-T-ATGCCACAACCCTCGGTCTGGCTGGAGCTTAGACATGGAATGAACTCCCTAT
* *
29171592 GCCTAAGCCAACCCACAAAACGAGCGTGCGTGCGCTCAGCCGATCGAAGAGGTAGAATGCGCAAG
191 GCCTAAGCCAACCCACAAAATG-GCGTGCGTGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAG
** * **
29171657 CCAAGGATCGGCTCAG-TCCCTCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTCAGTC
255 CCGGGGATCGGC-CAGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTTCAGTC
* *
29171721 TGATCTTAGACTAGGAATGAACCCCATATG
319 CGATCTTAGACTAGGAATGAACTCCATATG
* * * * * *
29171751 CTTAGACATGGAATAAACTCCGTATGCCGAAGCCAACCCATGAACGAGCATGCAGGCACTCAGCC
1 CTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCATGAACGAGCATGTAGGCAGTCAGCC
* * *
29171816 GACCGGAGAGG-A-AGATGCGTAAGCCAGGGACTGGCCCGAT-CCCCTCTGCGTGCT---AT-CG
65 GACCGGAGAGGCATA-ATGCGTAAGCCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGCGATCCG
* * ** * * * *
29171874 AT-CCTG-CTAT--CACAACCTTCAATCCGGTCT-GATCTTAGAC-TGGGAAGGAACTCCGTATG
129 ATACCAGTCTATGCCACAACCCTCGGTCTGG-CTGGAGCTTAGACAT-GGAATGAACTCCCTATG
* * * *
29171933 CCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCGAAGAGGTAGAATGCGCAAGC
192 CCTAAGCCAACCCACAAAATG-GCGTGCGTGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGC
* * * * * *
29171998 CGGGGA-CTGGCCCGATTCCCCCCTGCGTGCTGTCGATCCTGCCGCCTCAACCGTCAGTTCGGTC
256 CGGGGATC-GGCCAGA-TCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTTCAGTC
* *
29172062 CGGTCTTAGACGAGGAATGAACTC
319 CGATCTTAGACTAGGAATGAACTC
29172086 TGTATGCCTA
Statistics
Matches: 875, Mismatches: 131, Indels: 101
0.79 0.12 0.09
Matches are distributed among these distances:
339 4 0.00
340 103 0.12
341 110 0.13
342 14 0.02
343 2 0.00
344 2 0.00
345 5 0.01
346 4 0.00
348 2 0.00
352 15 0.02
353 26 0.03
354 295 0.34
355 36 0.04
356 1 0.00
357 1 0.00
358 1 0.00
359 1 0.00
360 4 0.00
361 1 0.00
362 1 0.00
363 3 0.00
364 1 0.00
365 2 0.00
366 70 0.08
367 169 0.19
368 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (348 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAACGAGCATGTAGGCAGTCAGCCG
ACCGGAGAGGCATAATGCGTAAGCCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGCGATCCGAT
ACCAGTCTATGCCACAACCCTCGGTCTGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACAAAATGGCGTGCGTGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCCGGGG
ATCGGCCAGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTTCAGTCCGATCTT
AGACTAGGAATGAACTCCATATG
Found at i:29171776 original size:26 final size:26
Alignment explanation
Indices: 29171725--29171777 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29171715 TCAGTCTGAT
*
29171725 CTTAGACTAGGAATGAACCCCATATG
1 CTTAGACTAGGAATAAACCCCATATG
* *
29171751 CTTAGAC-ATGGAATAAACTCCGTATG
1 CTTAGACTA-GGAATAAACCCCATATG
29171777 C
1 C
29171778 CGAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACCCCATATG
Found at i:29172049 original size:159 final size:158
Alignment explanation
Indices: 29171751--29172567 Score: 708
Period size: 159 Copynumber: 5.2 Consensus size: 158
29171741 ACCCCATATG
* * * * * *
29171751 CTTAGACAT-GGAATAAACTCCGTATGCCGAAGCCAACCCATG-AACGAGCATGCAGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
29171814 CCGACCGGAGAGGAAG-ATGCGTAAGCCAGGGACTGGCCCGATCCCCTCTGCGTGCTATCGATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACTGGCCCGATCCCCTCTGCGTGCTGTCGATCC
* * *
29171878 TGCTA-TCACAACCTTCAATCCGGTCTGAT
130 TGC-AGCCACAACCCTCAGTCCGGTCTGAT
* * * *
29171907 CTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
29171972 CGGCCGAAGAGGTAGAATGCGCAAGCCGGGGACTGGCCCGATTCCCCCCTGCGTGCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACTGGCCCGA-TCCCCTCTGCGTGCTGTCGATCC
* * * * * *
29172037 TGCCGCCTCAACCGTCAGTTCGGTCCGGT
130 TGCAGCCACAACCCTCAGTCCGGTCTGAT
* *
29172066 CTTAGAC-GAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * *
29172130 CCGACCGGAGAGGCAGAATACAAAAGCTGAGGACTGGCCCGATCCCCTCTACGTGCTATCGATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACTGGCCCGATCCCCTCTGCGTGCTGTCGATCC
* * *
29172195 TACAGCCGCAACCCTCAGTCTGGTCTGAT
130 TGCAGCCACAACCCTCAGTCCGGTCTGAT
* * * * *
29172224 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATAAAACGAGTGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
29172289 CGGCCGAAGAGGCATAATACTCAAGCCAGGGA-TCGGCCC-AGTCCCTTTCTGCTTGCTGTCGGT
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACT-GGCCCGA-TCCC-CTCTGCGTGCTGTCGAT
* * * *
29172352 CCCGCAACCACAACCCTCGGTTCGG-CTGGGGAT
128 CCTGCAGCCACAACCCTCAGTCCGGTCT---GAT
* * * * ** *
29172385 C--AGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GCCAAGCGGGCCCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-CGTGCGGGCGCTCA
* ** ** * * *
29172446 GCCGGCCGAAGAGGCAAAATGCGCAAGCCGGGGA-TCACCTTAGTCCCCCCTGCATGCTGCCGAT
64 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACTGGCCCGA-TCCCCTCTGCGTGCTGTCGAT
** * * *
29172510 CCTGTTGCCGCAACCCT-TGATCCGGTTTGAT
128 CCTGCAGCCACAACCCTCAG-TCCGGTCTGAT
*
29172541 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
29172568 TTAGACTGGG
Statistics
Matches: 530, Mismatches: 110, Indels: 40
0.78 0.16 0.06
Matches are distributed among these distances:
155 1 0.00
156 39 0.07
157 33 0.06
158 208 0.39
159 244 0.46
160 1 0.00
161 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACTGGCCCGATCCCCTCTGCGTGCTGTCGATCCT
GCAGCCACAACCCTCAGTCCGGTCTGAT
Found at i:29172255 original size:158 final size:157
Alignment explanation
Indices: 29171751--29172308 Score: 597
Period size: 158 Copynumber: 3.5 Consensus size: 157
29171741 ACCCCATATG
* * * * * *
29171751 CTTAGACAT-GGAATAAACTCCGTATGCCGAAGCCAACCCATG-AACGAGCATGCAGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
29171814 CCGACCGGAGAGGAAG-ATGCGTAAGCCAGGGACTGGCCCGATCCCCTCTGCGTGCTATCGATCC
65 CCGACCGAAGAGGCAGAATACGAAAGCGA-GGACTGGCCCGATCCCCTCTGCGTGCTATCGATCC
* * * *
29171878 TGCTA-TCACAACCTTCAATCCGGTCTGAT
129 TGC-AGCCACAACCCTCAGTCTGGTCTGAT
* * * *
29171907 CTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
29171972 CGGCCGAAGAGGTAGAATGCGCAAGCCGGGGACTGGCCCGATTCCCCCCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATACGAAAG-CGAGGACTGGCCCGA-TCCCCTCTGCGTGCTATCGATCC
* * * * *
29172037 TGCCGCCTCAACCGTCAGT-TCGGTCCGGT
129 TGCAGCCACAACCCTCAGTCT-GGTCTGAT
* *
29172066 CTTAGAC-GAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
29172130 CCGACCGGAGAGGCAGAATACAAAAGCTGAGGACTGGCCCGATCCCCTCTACGTGCTATCGATCC
65 CCGACCGAAGAGGCAGAATACGAAAGC-GAGGACTGGCCCGATCCCCTCTGCGTGCTATCGATCC
* *
29172195 TACAGCCGCAACCCTCAGTCTGGTCTGAT
129 TGCAGCCACAACCCTCAGTCTGGTCTGAT
* * * * *
29172224 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATAAAACGAGTGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
29172289 CGGCCGAAGAGGCATAATAC
66 CGACCGAAGAGGCAGAATAC
29172309 TCAAGCCAGG
Statistics
Matches: 333, Mismatches: 58, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
155 1 0.00
156 35 0.11
157 29 0.09
158 136 0.41
159 132 0.40
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATACGAAAGCGAGGACTGGCCCGATCCCCTCTGCGTGCTATCGATCCTG
CAGCCACAACCCTCAGTCTGGTCTGAT
Found at i:29172448 original size:317 final size:316
Alignment explanation
Indices: 29171753--29172461 Score: 781
Period size: 317 Copynumber: 2.2 Consensus size: 316
29171743 CCCATATGCT
* * * *
29171753 TAGACATGGAATAAACTCCGTATGCCGAAGCCAACCCATG-AACGAG-CATGCAGGCACTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCAAGCGGGCACTCAGCC
* * ** * *
29171816 GACCGGAGAGGAAGATGCGTAAGCCAGGGACTGGCCCGATCCCCTCTGCGTGCTATCGATCCTGC
66 GACCGGAGAGGCAGATACAAAAGCCAGGGACTGGCCCGATCCCCTCTACGTGCTATCGATCCTAC
* * *
29171881 TATCACAACCTTCAATCCGGTCTGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCC
131 TACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAAACC
* * * * *
29171946 ACGAAATGAGCGTGCGAGCGCTCAGCCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGACTGGCCC
196 ACAAAACGAGCGTGCGAGCGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGACTGGCCC
* * ** * *
29172011 GATTCCCCCCTGCGTGCTGTCGATCCTGCCGCCTCAACCGTCAGTTCGGTCCGGTC
261 GAGTCCCCCCTGCGTGCTGTCGATCCCGCAACCACAACCCTCAGTTCGGTCCGGTC
* * ** *
29172067 TTAGACGA-GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTA-CGGGCGCTCAG
1 -TAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCAAGCGGGCACTCAG
*
29172130 CCGACCGGAGAGGCAGAATACAAAAG-CTGAGGACTGGCCCGATCCCCTCTACGTGCTATCGATC
64 CCGACCGGAGAGGCAG-ATACAAAAGCCAG-GGACTGGCCCGATCCCCTCTACGTGCTATCGATC
* * * *
29172194 CTAC-AGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
127 CTACTA-CCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTC
* * * * * * *
29172258 AAACCATAAAACGAGTGTGCGGGTGCTGAGCCGGCCGAAGAGGCATAATACTCAAGCCAGGGA-T
191 AAACCACAAAACGAGCGTGCGAGCGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGACT
** * * * **
29172322 CGGCCC-AGTCCCTTTCTGCTTGCTGTCGGTCCCGCAACCACAACCCTCGGTTCGGCTGGGGATC
256 -GGCCCGAGTCCC-CCCTGCGTGCTGTCGATCCCGCAACCACAACCCTCAGTTCGG-TCCGG-TC
* * * *
29172386 -AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GCCAAGCGGGCCCTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCAAGCGGGCACTCAGCC
* *
29172449 GGCCGAAGAGGCA
66 GACCGGAGAGGCA
29172462 AAATGCGCAA
Statistics
Matches: 324, Mismatches: 58, Indels: 22
0.80 0.14 0.05
Matches are distributed among these distances:
315 34 0.10
316 44 0.14
317 241 0.74
318 3 0.01
319 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (316 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCAAGCGGGCACTCAGCC
GACCGGAGAGGCAGATACAAAAGCCAGGGACTGGCCCGATCCCCTCTACGTGCTATCGATCCTAC
TACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAAACC
ACAAAACGAGCGTGCGAGCGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGACTGGCCC
GAGTCCCCCCTGCGTGCTGTCGATCCCGCAACCACAACCCTCAGTTCGGTCCGGTC
Found at i:29172512 original size:317 final size:316
Alignment explanation
Indices: 29171895--29172567 Score: 685
Period size: 317 Copynumber: 2.1 Consensus size: 316
29171885 ACAACCTTCA
* * * *
29171895 ATCCGGTCTGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
1 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGCGTG
* * * *
29171960 CGAGCGCTCAGCCGGCCGAAGAGGTAGAATGCGCAAGCCGGGGACTGGCCCGATTCCCCCCTGCG
66 CGAGCGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGACTGGCCCGAGTCCCCCCTGCG
* ** * * **
29172025 TGCTGTCGATCCTGCCGCCTCAACCGTCAGTTCGGTCCGGTCTTAGACGAGGAATGAACTCTGTA
131 TGCTGTCGATCCCGCAACCACAACCCTCAGTTCGGTCCGGTC-TAGACGAGGAATGAACTCCCTA
* * ** * * *
29172090 TGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATACAAAA
195 TGCCTAAGCCAACCCACGAAACGAGCCAACGGGCCCTCAGCCGACCGAAGAGGCAAAATACAAAA
* ** * * *
29172155 GCTGAGGACTGGCCCGATCCCCTCTACGTGCTATCGATCCTACAGCCGCAACCCTCAG
260 GCCGAGGACTCACCCGATCCCCCCTACATGCTACCGATCCTACAGCCGCAACCCT-AG
* * *
29172213 -TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATAAAACGAGTGTG
1 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGCGTG
* * * * * **
29172277 CGGGTGCTGAGCCGGCCGAAGAGGCATAATACTCAAGCCAGGGA-TCGGCCC-AGTCCCTTTCTG
66 CGAGCGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGACT-GGCCCGAGTCCC-CCCTG
* * * **
29172340 CTTGCTGTCGGTCCCGCAACCACAACCCTCGGTTCGGCTGGGGATC-AGAC-ATGGAATGAACTC
129 CGTGCTGTCGATCCCGCAACCACAACCCTCAGTTCGG-TCCGG-TCTAGACGA-GGAATGAACTC
* * *
29172403 CCTATGCCTAAGCCAACCCACGAAATG-GCCAAGCGGGCCCTCAGCCGGCCGAAGAGGCAAAATG
191 CCTATGCCTAAGCCAACCCACGAAACGAGCCAA-CGGGCCCTCAGCCGACCGAAGAGGCAAAATA
** * ** * * *** *
29172467 CGCAAGCCGGGGA-TCACCTTAGTCCCCCCTGCATGCTGCCGATCCTGTTGCCGCAACCCTTG
255 CAAAAGCCGAGGACTCACCCGA-TCCCCCCTACATGCTACCGATCCTACAGCCGCAACCCTAG
* *
29172529 ATCCGGTTTGATCTTAGACTAGGAATGAACTCCGTATGC
1 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
29172568 TTAGACTGGG
Statistics
Matches: 287, Mismatches: 60, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
316 15 0.05
317 267 0.93
318 3 0.01
319 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (316 bp):
ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGCGTG
CGAGCGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGACTGGCCCGAGTCCCCCCTGCG
TGCTGTCGATCCCGCAACCACAACCCTCAGTTCGGTCCGGTCTAGACGAGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGAGCCAACGGGCCCTCAGCCGACCGAAGAGGCAAAATACAAAAG
CCGAGGACTCACCCGATCCCCCCTACATGCTACCGATCCTACAGCCGCAACCCTAG
Found at i:29173299 original size:26 final size:26
Alignment explanation
Indices: 29173261--29173313 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29173251 GGCTCAAAAT
*
29173261 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29173287 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29173313 C
1 C
29173314 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29174329 original size:26 final size:25
Alignment explanation
Indices: 29174300--29174351 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
29174290 CCGGTCTGAT
29174300 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACT-CGTATG
* *
29174326 CTTAGACTTGGGATGAACTCGTATG
1 CTTAGACTAGGAATGAACTCGTATG
29174351 C
1 C
29174352 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCGTATG
Found at i:29174722 original size:26 final size:26
Alignment explanation
Indices: 29174680--29174732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29174670 TCGGTTCGAT
*
29174680 CTTAGACTGGGAGTGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
29174706 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
29174732 C
1 C
29174733 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:29175005 original size:158 final size:158
Alignment explanation
Indices: 29174705--29175007 Score: 344
Period size: 158 Copynumber: 1.9 Consensus size: 158
29174695 AACTCCCTAT
* *
29174705 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAATGAGCGTGCGGGCGTTGAGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCACGAAATGAGCGTGCGGGCATTGAGC
** * * **
29174770 CGGCCGGAGAGGCATAATACGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTAATGTCGGTCC
66 CAACCGGAGAGGCAAAATACGCAACCCAGGGATCGGCCCGATCCCCCTCTGCGTAATGTCAATCC
* *
29174835 CGTTGCCACAACCCTTGGTTCGGCTGGG
131 CGCTACCACAACCCTTGGTTCGGCTGGG
* * * *
29174863 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGTGGGCAATT-A
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCACGAAATGAGCGTGCGGGC-ATTGA
* * * * **
29174927 GCCAACCGGAGAGGCAAAATGA-GCATCCC-GATGATCGGCCCGATCCCTC-CTGTGTGCTGTCA
64 GCCAACCGGAGAGGCAAAAT-ACGCAACCCAG-GGATCGGCCCGATCCCCCTCTGCGTAATGTCA
* *
29174989 ATCCTGCTACCGCAACCCT
127 ATCCCGCTACCACAACCCT
29175008 CGGTCTGGTT
Statistics
Matches: 119, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
158 60 0.50
159 56 0.47
160 3 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCACGAAATGAGCGTGCGGGCATTGAGC
CAACCGGAGAGGCAAAATACGCAACCCAGGGATCGGCCCGATCCCCCTCTGCGTAATGTCAATCC
CGCTACCACAACCCTTGGTTCGGCTGGG
Found at i:29175051 original size:26 final size:26
Alignment explanation
Indices: 29175022--29175074 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29175012 CTGGTTCGAT
29175022 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
* *
29175048 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
29175074 C
1 C
29175075 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:29175175 original size:343 final size:343
Alignment explanation
Indices: 29173996--29175513 Score: 1112
Period size: 343 Copynumber: 4.3 Consensus size: 343
29173986 TACACTACGA
*** * * ** * * * **
29173996 ATGAACTCCGTATATATAAGTCAGCCTACGAAACGAG-AAGCGGGCGCTGAGCCTGCCAAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGAGCCGGCCGGAGAGG
* * * * * * *
29174060 CATAATGCACAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGATGCCGGTCCCGCTGCCACAAC
66 CATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAAC
** * * * *
29174125 CCTCGGTTCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACCAAACAG
131 CCTCTATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-G
* * ** ** * * * * * * *
29174190 -GCGTGCGGGC-GCTCAGCCGGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCC
195 CGCAT-CCGGCAATTCAGCCAACCGGACAGCCAAAATGAGCAAGTCAGGGATCGGCCCGATCCCC
* * * * *
29174253 CCTGTGTGCTGTCGATCTTGC-AGCCGCAACCCTCTGTCCGG-TCTGATCTTAGACTAGGAATGA
259 CCCGTGTGCTATCAATCCTGCTA-CCGCAACCCTCAGTCCGGTTC-GATCTTAGACTAGGAATGA
*
29174316 ACTCCGTATGCTTAGACTTGGG
322 ACTCCGTATGCTTAGACTGGGG
* * * * **
29174338 ATGAACT-CGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGACCAGAAAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCG-TTGA--G-CC-----GG
* * * * ** *
29174402 CCGACTGGAGAGGCATAATACGTAAGCC-GACGATC-AGCCTGATCCTTCTTTGCGTGCTGCCAA
57 -C--C-GGAGAGGCATAATGCGCAAGCCAG-GGATCGA-CCCGATCCCCCTCTGCGTGCTG----
* * * * *
29174465 TCTCGCTACCGGTCTTGCTACCACAACGCTCAATCCGGTTGGGGCTTAGACATGGAATGAACTCC
112 --TCGGT-CCCG--TTG---CCACAACCCTCTATCCGGCTGGGGCTTAGACATGGAATGAACTCC
* * * ** * *** ** * * *
29174530 GTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGG-TGCTCAATCGACCGGAGAGGCAAAAT-A
169 CTATGCCTAAGCCAACCCACGAAACGCGCAT-CCGGCAATTCAGCCAACCGGACAGCCAAAATGA
* * * * * * * * *
29174593 TGTAAGTCGGGGATCAGCTCGGTCCCCTCCTGGGTGCTGTCGATCCTGCTGCTGGTCCTACCATC
233 -GCAAGTCAGGGATCGGCCCGATCCCC-CCCGTGTGCTATC-A--AT-C--CT-G--CTA-C--C
* * * * * *
29174658 GCAACCCTCACTTCGGTTCGATCTTAGACTGGGAGTGAACTCCCTATGCTTAGACAT-GGA
284 GCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGG
* * *
29174718 ATGAACTCCGTATGCCTAAGCCAA-CCACGAAATGAGCGTGCGGGCGTTGAGCCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGAGCCGGCCGGAGAGG
* * **
29174782 CATAATACGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTAATGTCGGTCCCGTTGCCACAAC
66 CATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAAC
* * * *
29174847 CCT-TGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG
131 CCTCT-ATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* ** ** * * * *
29174911 GGTGTGTGGGCAATT-AGCCAACCGGAGAGGCAAAATGAGC-A-TCCCGATGATCGGCCCGATCC
195 CGCAT-CCGGCAATTCAGCCAACCGGACAGCCAAAATGAGCAAGT-CAG-GGATCGGCCCGATCC
* * * * *
29174973 CTCCTGTGTGCTGTCAATCCTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGA
257 CCCCCGTGTGCTATCAATCCTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGA
*
29175038 ACTTCGTATGCTTAGACTGGGG
322 ACTCCGTATGCTTAGACTGGGG
* ** *
29175060 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGAGCCGGCCAAAAAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGAGCCGGCCGGAGAGG
* * * *
29175125 CTTAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTGCGGGCTGTCGGTCCTGTTGCCACAAC
66 CATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAAC
29175190 CCTCTATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGC
131 CCTCTATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGC
** * * * *
29175255 GCATCCGGCCGTTCAGCCGACCGGACAGCCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCC
196 GCATCCGGCAATTCAGCCAACCGGACAGCCAAAATGAGCAAGTCAGGGATCGGCCCGATCCCCCC
* * * * * *
29175320 CGTGTTCTATCGATCCTGCTACTGCAACCTTCAGTCCAG-TCTGATCTTAGACTAGGAAAGAACT
261 CGTGTGCTATCAATCCTGCTACCGCAACCCTCAGTCCGGTTC-GATCTTAGACTAGGAATGAACT
29175384 CCGTATGCTTAGACTGGGG
325 CCGTATGCTTAGACTGGGG
* ** * *
29175403 ATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCGT-TCGGGCGCTCAGCCGGCCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGT-GGGCGTTGAGCCGGCCGGAGAG
* * *
29175467 GCATAATGCGTAAGCCGGGGATCAACCC-AGTCCCCCTCTGCGTGCTG
65 GCATAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCTCTGCGTGCTG
29175514 CCGATCCCAC
Statistics
Matches: 935, Mismatches: 178, Indels: 125
0.76 0.14 0.10
Matches are distributed among these distances:
341 23 0.02
342 94 0.10
343 350 0.37
344 5 0.01
345 5 0.01
346 2 0.00
347 1 0.00
348 2 0.00
350 1 0.00
351 2 0.00
352 1 0.00
353 2 0.00
354 18 0.02
355 137 0.15
356 2 0.00
358 3 0.00
360 3 0.00
361 7 0.01
362 3 0.00
364 2 0.00
366 1 0.00
367 148 0.16
368 14 0.01
370 1 0.00
371 3 0.00
372 1 0.00
374 1 0.00
375 1 0.00
376 2 0.00
377 2 0.00
378 2 0.00
379 2 0.00
380 76 0.08
381 18 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (343 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGAGCCGGCCGGAGAGG
CATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAAC
CCTCTATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGC
GCATCCGGCAATTCAGCCAACCGGACAGCCAAAATGAGCAAGTCAGGGATCGGCCCGATCCCCCC
CGTGTGCTATCAATCCTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTC
CGTATGCTTAGACTGGGG
Found at i:29175408 original size:26 final size:26
Alignment explanation
Indices: 29175365--29175417 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29175355 CCAGTCTGAT
*
29175365 CTTAGACTAGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCATATG
* * *
29175391 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAAAGAACTCCATATG
29175417 C
1 C
29175418 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCATATG
Found at i:29175744 original size:26 final size:26
Alignment explanation
Indices: 29175706--29175758 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29175696 CTGGTCTGAT
29175706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29175732 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29175758 C
1 C
29175759 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29177198 original size:158 final size:158
Alignment explanation
Indices: 29176581--29177240 Score: 474
Period size: 158 Copynumber: 4.2 Consensus size: 158
29176571 ACTCCGTATG
* * * **
29176581 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACAAGCGTGCGGG-AGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACGGGCGTGCGGGCA-CTCAG
** * * * * ** * * * *
29176645 TAGG-CCAGAGAGGTAGAATGCGCAAGCTAGGGATCGGGCCGGTCCCCCCTGTGTGCTGTCGATC
65 CCGGTCGA-AGAGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATC
* ** * *
29176709 CTGCTA-CCGTAACCCTCGGTCCGATCTGAT
129 CCGC-AGCCACAACCCTCGATCCGGTCTGAT
* * * ** *** * ** *
29176739 CTTAGAC-TCGAAATGAACTCCGTATGCATAAGTCAACCCACAAAACAAACGTGCAGGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAACCCAACCCACAAAACGGGCGTGCGGGCACTCAG
** * * * * * ** * * **
29176803 CCGACCGAAGAGGCATAATGCGCATGTCGGGGATCGGCTTGTTCCCCCTCTGAGTGCTGCCAGCC
65 CCGGTCGAAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCAATC
* * * * **
29176868 CCGCTA-CCAAAACCCTC-AGTTCAGTCGGGG
129 CCGC-AGCCACAACCCTCGA-TCCGGTCTGAT
** *
29176898 CTTAGACATGGAATGAACTCCCTATGCCTAATTCAACCCACAAAATGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACGGGCGTGCGGGCACTCAGC
* * * *
29176963 CGGTCGAAGAGGCAGAATGCATAAGCCGGGGATCTGCCCGGTCCCCCTTGCGTGCTGCCAATCCC
66 CGGTCGAAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCCC
*
29177028 GCAGCCACAACCCTCGATCCGG-CTAGGGT
131 GCAGCCACAACCCTCGATCCGGTCT--GAT
* * ** *
29177057 -TTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACGGGTGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACGGGCGTGCGGGCACTCAGC
* * *** *
29177121 CGGTTGGAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCT
66 CGGTCGAAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCCC
* ** *
29177186 GCTGCCGTAACCCTCGGTCCGGTCTGAT
131 GCAGCCACAACCCTCGATCCGGTCTGAT
*
29177214 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCCTATGC
29177241 TTAGGTTGGG
Statistics
Matches: 396, Mismatches: 93, Indels: 26
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 265 0.67
159 124 0.31
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACGGGCGTGCGGGCACTCAGC
CGGTCGAAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCCC
GCAGCCACAACCCTCGATCCGGTCTGAT
Found at i:29177610 original size:26 final size:26
Alignment explanation
Indices: 29177581--29177633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29177571 CTGGTCCGAT
**
29177581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
29177607 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
29177633 C
1 C
29177634 GTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:29184566 original size:26 final size:26
Alignment explanation
Indices: 29184530--29184582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29184520 CCTGTTTAAT
29184530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29184556 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29184582 C
1 C
29184583 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29184948 original size:26 final size:26
Alignment explanation
Indices: 29184910--29184962 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29184900 CCAGTCTGAT
*
29184910 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29184936 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29184962 C
1 C
29184963 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29185383 original size:26 final size:26
Alignment explanation
Indices: 29185354--29185406 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29185344 CCGGTCTGAT
*
29185354 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29185380 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29185406 C
1 C
29185407 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29185523 original size:184 final size:184
Alignment explanation
Indices: 29185208--29185564 Score: 441
Period size: 184 Copynumber: 1.9 Consensus size: 184
29185198 TAAACATGGA
* * * *
29185208 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGTCGATAAGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGACAAGAGAGG
* * * * *
29185273 TAGAATGTGTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACTATCACAACC
66 CAGAATGTGCAAGCAGAGGACCGACCCGATCCCCCCTACGTGCTACCGATCCTACTATCACAACC
* *
29185338 CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
131 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * * *
29185392 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTACGGGCAG-TCAGCCGACCAGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGC-GCTCAGCCGACAAGAGAG
* * * ** * * **
29185456 GCAGAATGTGCAAGTCAG-GGACC-AGCCCGGTTCCCCTTACGTGCTGTCGATCCTGCTGTGGCA
65 GCAGAATGTGCAAG-CAGAGGACCGA-CCCGATCCCCCCTACGTGCTACCGATCCTACTATCACA
*
29185519 ACCCTCGATCCGGTCCGATCTTAGACTGTGAATGAACTCCGTATGC
128 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
29185565 ATAAGTCAAC
Statistics
Matches: 145, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 141 0.97
185 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGACAAGAGAGG
CAGAATGTGCAAGCAGAGGACCGACCCGATCCCCCCTACGTGCTACCGATCCTACTATCACAACC
CTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
Found at i:29185907 original size:26 final size:26
Alignment explanation
Indices: 29185855--29185907 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
29185845 CCGATCTGAT
*
29185855 CTTAGACTGGGAATGAACTTCGAATG
1 CTTAGACTGGGAATGAACTTCCAATG
29185881 CTTAGACTAGGG-ATGAAC-TCCATATG
1 CTTAGACT-GGGAATGAACTTCCA-ATG
29185907 C
1 C
29185908 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 18 0.75
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCCAATG
Found at i:29185984 original size:343 final size:349
Alignment explanation
Indices: 29185538--29186288 Score: 907
Period size: 355 Copynumber: 2.2 Consensus size: 349
29185528 CCGGTCCGAT
* * * *
29185538 CTTAGAC-TGTGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGTGCTGAG
1 CTTAGACATG-GAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAG
29185602 CCAGCCAAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAAT-CCC-T-C-T-CTA-CG-TGCT
65 CCAGCCAAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAATCCCCTTGCATGCTATCGTTGCT
* * *
29185660 GCCGGTCCCGCTGCCACAACCCTC-GTTTTGGCTGGGGCTTAGACATGGAATGAACTCCCTAAGC
130 GCCAGTCCCGCTACCACAACCCTCAG-TTCGGCTGGGGCTTAGACATGGAATGAACTCCCTAAGC
* * * *
29185724 CTAAGCCAACCCACAAAACGGGTGTGCGGGTGCTCAGCCG-GCTAGAAAGGCAAAATGC-TCAAG
194 CTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGATC-AGAAAGGCAAAATGCGT-AAG
* * * * *
29185787 CCGGGGATCAGCTCGATCCCCCCTACGTGTTGTCGATCTTACTG-TCGCAACCCTCGATCCGATC
257 CCAGGGATCAGCTCGATCCCCCCTACGTGCTGCCAATCCTACTGCT-GCAACCCTCGATCCGATC
*
29185851 TGATCTTAGACTGGGAATGAACTTCGAATG
321 TGATCTTAGACTGGGAATGAAC-TCCAATG
* *
29185881 CTTAGAC-TAGGGATGAACTCCATATGCCTAAGTCAACCCATTAAACGAGCGTGCAGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAG
** * * *
29185945 CTGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCTTTTGCATGTTATCGATC
65 CCAGCCAAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAATCCCC--TTGCATGCTATCG---
* *
29186010 TTGCTGCCAGTCCTGCTACCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGT
125 TTGCTGCCAGTCCCGCTACCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCT
* * * * * *
29186075 ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGATCGGAGATGCAGAATGCGTA
190 AAGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGATCAGAAAGGCAAAATGCGTA
* ** * * * * *
29186140 AGCTAGGGATTGGCTCGGTCCCCTCTACGTGCTGCCAATCCTGCTGCTGTAACCCTCGATCTGAT
255 AGCCAGGGATCAGCTCGATCCCCCCTACGTGCTGCCAATCCTACTGCTGCAACCCTCGATCCGAT
* *
29186205 TTGATCTTAGACTGGGAATGAACTCCTATG
320 CTGATCTTAGACTGGGAATGAACTCCAATG
* *
29186235 CTTAGACATGGAATGAACTCCATATGCCTTAGCCAACCCATGAAACGAGCGTGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGC
29186289 GTGCGGGCAC
Statistics
Matches: 344, Mismatches: 46, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
343 95 0.28
344 4 0.01
347 1 0.00
348 1 0.00
349 1 0.00
350 2 0.01
351 2 0.01
354 53 0.15
355 181 0.53
356 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (349 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CAGCCAAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAATCCCCTTGCATGCTATCGTTGCTG
CCAGTCCCGCTACCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTAAGCCT
AAGCCAACCCACAAAACGAGCGTACGGGTGCTCAGCCGATCAGAAAGGCAAAATGCGTAAGCCAG
GGATCAGCTCGATCCCCCCTACGTGCTGCCAATCCTACTGCTGCAACCCTCGATCCGATCTGATC
TTAGACTGGGAATGAACTCCAATG
Found at i:29186247 original size:25 final size:27
Alignment explanation
Indices: 29186210--29186266 Score: 84
Period size: 25 Copynumber: 2.2 Consensus size: 27
29186200 CTGATTTGAT
29186210 CTTAGACTGGGAATGAACTCC-TATG-
1 CTTAGACTGGGAATGAACTCCATATGC
29186235 CTTAGACAT-GGAATGAACTCCATATGC
1 CTTAGAC-TGGGAATGAACTCCATATGC
29186262 CTTAG
1 CTTAG
29186267 CCAACCCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 19 0.66
26 5 0.17
27 5 0.17
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:29186540 original size:159 final size:157
Alignment explanation
Indices: 29186234--29186747 Score: 435
Period size: 159 Copynumber: 3.2 Consensus size: 157
29186224 GAACTCCTAT
* *
29186234 GCTTAGACATGGAATGAACTCCATATGCCTTAGCCAACCCATGAAACGAGCGTGCGTGCGGGCAC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA----GCGTGCGGGCGC
* * * * * * *
29186299 TCAACCGATCGGAGAGGCAGAATGTACAAGCCGAGGATCGGCCCGGTCCTTCCTTACGTGCTGTC
62 TCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCC-CCCTTACGTGCTGCC
* * * *
29186364 GATCCTACTGTCGCAACCCTC-AGTCC-GATCCGA
126 GATCCTA-TGCCACAACCCTCGA-TCCGGCT-AGA
* * * * * *
29186397 TCTTAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
29186462 CAGACCGAAGAGGCATAATGTGTAAGCCGGGGATTGGCTCGGTCCCCCTCTGCGTGCTGCCGATC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCT-TACGTGCTGCCGATC
*
29186527 TCGT-TGCCACAACCCTCGATCCGGCTAGG
130 -C-TATGCCACAACCCTCGATCCGGCTAGA
* * * * *
29186556 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** *
29186621 CCGGCAGGGGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCCACATGCTGCCGATCC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCTTACGTGCTGCCGATCC
* * * * *
29186686 TGCTGTCGCAACCCTCGGTACGGTCT-GA
131 T-ATGCCACAACCCTCGATCCGG-CTAGA
* * * *
29186714 TCTTAAAC-TAGGAATGAAATCCATATGCTTAAGC
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGC
29186748 TGGGGATGAA
Statistics
Matches: 282, Mismatches: 60, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 59 0.21
159 172 0.61
160 4 0.01
161 1 0.00
163 43 0.15
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCTTACGTGCTGCCGATCC
TATGCCACAACCCTCGATCCGGCTAGA
Found at i:29188652 original size:26 final size:26
Alignment explanation
Indices: 29188602--29188654 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29188592 CCGATCTGAT
**
29188602 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29188628 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29188654 C
1 C
29188655 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29189572 original size:13 final size:13
Alignment explanation
Indices: 29189554--29189580 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
29189544 GGGTGCTGAA
29189554 CCGACCGAAGAGG
1 CCGACCGAAGAGG
29189567 CCGACCGAAGAGG
1 CCGACCGAAGAGG
29189580 C
1 C
29189581 ATAATGCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.33, G:0.37, T:0.00
Consensus pattern (13 bp):
CCGACCGAAGAGG
Found at i:29189883 original size:26 final size:26
Alignment explanation
Indices: 29189844--29189896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29189834 CTGGTCTGAT
* *
29189844 CTTAGACTTAGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTACGTATG
*
29189870 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACATAGAATGAACTACGTATG
29189896 C
1 C
29189897 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTACGTATG
Found at i:29190362 original size:26 final size:26
Alignment explanation
Indices: 29190313--29190363 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29190303 GGTCTGATCC
*
29190313 TAGACTAGGAATGAACTTCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
* * *
29190339 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCATATGC
29190364 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:29191075 original size:26 final size:26
Alignment explanation
Indices: 29191037--29191087 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29191027 GGCTCAAAAT
29191037 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29191063 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
29191088 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29191453 original size:159 final size:158
Alignment explanation
Indices: 29191062--29191462 Score: 407
Period size: 158 Copynumber: 2.5 Consensus size: 158
29191052 AACTCCGTAT
* * *
29191062 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCGTAAAACGAA-CGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AAGCGTACGGGCGCTCA
* * * *
29191126 GCCGATCGGAGAGGCAGAATGCGCAAGTCGAAGATCGGCCTGATCCCGCCCTACATGATGTCGAT
65 GCCGATCGAAGAGGCAGAATGCACAAGCCGAAGATCGGCCTGATCCCGCCCTACATGACGTCGAT
* ** *
29191191 CCTGTGCTGCATCCCTCAGTCCAATCTGA
130 CCCGTGCCACAACCCTCAGTCCAATCTGA
* * * * * * * * * *
29191220 TCTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATAAGTGTGCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCA
* * ** * *
29191284 GTCGATCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCTGATCCC-CCTCTGCGTG-CGTCCG
65 GCCGATCGAAGAGGCAGAATGCACAAGCCGAAGATCGGCCTGATCCCGCC-CTACATGACGT-CG
* * *
29191347 GTCCCGCTGCCACAACCCTCGGTCCAAT-TGGG
128 ATCCCG-TGCCACAACCCTCAGTCCAATCT-GA
* * *
29191379 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCATGAAACAAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
*
29191444 CCGACCGAAGAGGCAGAAT
66 CCGATCGAAGAGGCAGAAT
29191463 ATGTAAGTCG
Statistics
Matches: 190, Mismatches: 46, Indels: 13
0.76 0.18 0.05
Matches are distributed among these distances:
157 7 0.04
158 98 0.52
159 84 0.44
160 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCACAAGCCGAAGATCGGCCTGATCCCGCCCTACATGACGTCGATC
CCGTGCCACAACCCTCAGTCCAATCTGA
Found at i:29192447 original size:26 final size:26
Alignment explanation
Indices: 29192418--29192470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29192408 CCGATCTAAT
29192418 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29192444 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29192470 C
1 C
29192471 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29192796 original size:26 final size:26
Alignment explanation
Indices: 29192760--29192812 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29192750 CCGGTCTGAT
*
29192760 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* * *
29192786 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
29192812 C
1 C
29192813 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:29192822 original size:342 final size:343
Alignment explanation
Indices: 29192104--29192837 Score: 958
Period size: 343 Copynumber: 2.1 Consensus size: 343
29192094 ATCTGATCTA
* * * * **
29192104 AGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACTAAACGAGCGTATGGGTGCTGAGCCGA
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGCACTGAGCCGA
** * * *
29192169 TCGAAAAGTTATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTTTGCATGCTATCGGTCTCGC
66 TCGAAAAGGCATAATACGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTACCGGTCTCGC
*
29192234 TACCACAACCCTCGGTCCCGCTGGAGCTTAGAAGTGGAATGAACTCCCTATGCCTAAGCCAACCC
131 TACCACAACCCTCAGTCCCGCTGGAGCTTAGAAGTGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * * *
29192299 ATGAAACGGGTGAGCGGGCGCTCAGCCGATCAGATAGGCAGAATGCGCAAGCCGGGGATTGGCCC
196 ACGAAACGAGTCAGCGGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCC
* **
29192364 GGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCACAACCCTTGGTCCGATCTAATCTTAGACTGGG
261 GATCCCCCCTGCGTGCTGCCGATCCTGCTGTCACAACCCTCAGTCCGATCTAATCTTAGACTGGG
*
29192429 AATGAACTCCGTATGCTT
326 AATGAAATCCGTATGCTT
* *
29192447 AGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGT-TCGGGCACTGAGTCG
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAT-GGGCACTGAGCCG
* * * * * *
29192511 ATCGAAAAGGCATAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGGTC-CT
65 ATCGAAAAGGCATAATACGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTACCGGTCTC-
* * * *
29192575 GCTGCCATAATCCTCAGT-CTGACTGGAGCTTAGACA-TGGAATGAACTCCCTATGCCTAAGCCA
129 GCTACCACAACCCTCAGTCCCG-CTGGAGCTTAGA-AGTGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
29192638 ACCCACGAAACGAG-CATGCGGGTGCTTAGTCGACCGGAAAGGTAGAATGCGCAAGCCGAGGATC
192 ACCCACGAAACGAGTCA-GCGGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATC
* * * *
29192702 GGCCCGAT-CCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGA
256 GGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGTCACAACCCTCAGTCCGATCTAATCTTAGA
*
29192766 CTGGGAATGAAATTCGTATGCTT
321 CTGGGAATGAAATCCGTATGCTT
* *
29192789 AGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
29192838 GCGGACGCTC
Statistics
Matches: 338, Mismatches: 48, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
342 122 0.36
343 215 0.64
344 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (343 bp):
AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGCACTGAGCCGA
TCGAAAAGGCATAATACGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTACCGGTCTCGC
TACCACAACCCTCAGTCCCGCTGGAGCTTAGAAGTGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGAGTCAGCGGGCGCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCC
GATCCCCCCTGCGTGCTGCCGATCCTGCTGTCACAACCCTCAGTCCGATCTAATCTTAGACTGGG
AATGAAATCCGTATGCTT
Found at i:29193484 original size:15 final size:15
Alignment explanation
Indices: 29193461--29193490 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
29193451 GAGCGTGCGG
*
29193461 GTGCGGGTGCTGAGC
1 GTGCAGGTGCTGAGC
29193476 GTGCAGGTGCTGAGC
1 GTGCAGGTGCTGAGC
29193491 CGATCGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.20, G:0.50, T:0.20
Consensus pattern (15 bp):
GTGCAGGTGCTGAGC
Found at i:29194130 original size:170 final size:171
Alignment explanation
Indices: 29193781--29194136 Score: 402
Period size: 171 Copynumber: 2.1 Consensus size: 171
29193771 TAGACTGGGG
* * * * **
29193781 ATGAACTCTGTTTGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGTCGGTCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCACTCGACCGAAGAGG
* * * ** *
29193846 CATAATGCGTAAGCCAGGGATCAGCTCGGTCCCTTTCTGCGTGCTGTCGATCCTGCTGTCGGTCC
66 CAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCGGTCC
* * * * * *
29193911 TACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
131 TACTACCACAACCCTCGATCCGGCTCGAGCTTAGACATGAA
* *
29193952 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACT-GACCGGAA-A
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTC-ACTCGACC-GAAGA
*
29194015 GGTAGAATGCGCAAGCC-GAGGATCAGCCCGGTCCCCCT-TACGTGCTGTCGATCCTGCTG-CTG
64 GGCAGAATGCGCAAGCCAG-GGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCTGCTGTC-G
* *
29194077 GTCCTGCTACCACAACCCTCGATCCGG-TCCGATCTTAGAC-TAGAA
127 GTCCTACTACCACAACCCTCGATCCGGCT-CGAGCTTAGACAT-GAA
29194122 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
29194137 TTAGACATGG
Statistics
Matches: 156, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
169 3 0.02
170 70 0.45
171 78 0.50
172 5 0.03
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCACTCGACCGAAGAGG
CAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCTGCTGTCGGTCC
TACTACCACAACCCTCGATCCGGCTCGAGCTTAGACATGAA
Found at i:29194139 original size:26 final size:26
Alignment explanation
Indices: 29194110--29194162 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29194100 CCGGTCCGAT
29194110 CTTAGAC-TAGAAATGAACTCCGTATG
1 CTTAGACAT-GAAATGAACTCCGTATG
*
29194136 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
29194162 C
1 C
29194163 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:29194800 original size:26 final size:26
Alignment explanation
Indices: 29194762--29194814 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29194752 GGCTTAAAAT
29194762 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
29194788 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGCATG
29194814 C
1 C
29194815 CCAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:29195304 original size:26 final size:26
Alignment explanation
Indices: 29195275--29195327 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29195265 CCGGTCCAAT
29195275 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
29195301 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
29195327 C
1 C
29195328 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:29195692 original size:159 final size:158
Alignment explanation
Indices: 29195300--29195898 Score: 450
Period size: 158 Copynumber: 3.6 Consensus size: 158
29195290 AACTCCATAT
*
29195300 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
* * ** *
29195365 CCGGTCGGAGGGGCAAAATGCGCAAGCCAGGGACCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGACCGGCCCGATCCCCCCTAAGTGCTATCAATCC
* * * * * *
29195430 TGCTGCCTCAACCCTTGGTCCAGTTTGA
131 CGCTGCCACAACACTCGGTCCAGCTGGA
* * ** * * ** * *
29195458 TCTTAGAC-TGGGAATGAACTCCGTATGCCAAATTCAACCCATGAAACAAGCGTTTGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCA
* * * *
29195522 GCCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTAAGTTCTGTCAAT
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGACCGGCCCGATCCCCC-CTAAGTGCTATCAAT
* *
29195587 CCCGCTGCCACAATACTCGGTCCAGCTGGG
129 CCCGCTGCCACAACACTCGGTCCAGCTGGA
* * * * * *
29195617 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCATTAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
* * *
29195682 CCGG-CAGGAGAGGCCAGTCGAAGAGGCATAATGCGCAAGCTAGGGATCAGCCC-AGTCCCCCTC
66 CCGGTC-GGAGA-G---G-C----A---A-AATGCGCAAGCCAGGGACCGGCCCGA-TCCCCC-C
** * * * *
29195745 TGCGTGCTATCGATCCCGCTGTCGATCCTGCTACCACAACCCGCGGTCC-GACTGGG
115 TAAGTGCTATCAAT--C-C---CG---CTG---CCACAACACTCGGTCCAG-CTGGA
*
29195801 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
** * * *
29195866 CCAATCGGGGAGGCAAAATGCACAAGCCCGGGA
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGA
29195899 TCGACCTAGC
Statistics
Matches: 343, Mismatches: 66, Indels: 51
0.75 0.14 0.11
Matches are distributed among these distances:
157 1 0.00
158 97 0.28
159 89 0.26
160 2 0.01
163 1 0.00
164 1 0.00
168 1 0.00
171 15 0.04
172 40 0.12
174 1 0.00
175 2 0.01
178 2 0.01
179 1 0.00
180 1 0.00
181 3 0.01
183 2 0.01
184 83 0.24
185 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGACCGGCCCGATCCCCCCTAAGTGCTATCAATCC
CGCTGCCACAACACTCGGTCCAGCTGGA
Found at i:29196009 original size:26 final size:26
Alignment explanation
Indices: 29195971--29196023 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29195961 CTGGTTTGAA
29195971 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29195997 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
29196023 C
1 C
29196024 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29196300 original size:158 final size:158
Alignment explanation
Indices: 29196006--29196425 Score: 366
Period size: 158 Copynumber: 2.7 Consensus size: 158
29195996 GCTTAGACGT
* * *
29196006 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGACCGAAG
* * * * * * *
29196071 AGGCAAAATGCGTAAGCCGAGGATTGACTCGGTCTCCCTCTGCGTGCTGTCGATCCTGCTGTCAC
66 AGGCAAAATGCGCAAGCCGAGGATTGACTCGATCCCCCTCTACGTGATGTCAATCCTGCTGCCAC
29196136 AACCTCGGTTCGGTCTGATCTTAGTCTG
131 AACCTCGGTTCGGTCTGATCTTAGTCTG
* ** * * * * *
29196164 GGAATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGTTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGACCGAAG
* * * * *
29196229 AGGC-TAATGCGCAAGCCGGGGATCTGCCT-GATCCCCCTCTACGTGATGTCAAT-TTCGTTGCC
66 AGGCAAAATGCGCAAGCCGAGGAT-TGACTCGATCCCCCTCTACGTGATGTCAATCCT-GCTGCC
* * ** *
29196291 ACAACCCTCGG-TCCGACTGCGGCTTAGACAT-
129 ACAA-CCTCGGTTCGGTCTG-ATCTTAGTC-TG
* * * * * * * *
29196322 GGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGGGCGTGCGGGCACTCAGCCGACGGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGACCGAAG
* * * ** *
29196387 AGGTAGAATG-GACAAGCCGGGGATCAACCCGATCCCCCT
66 AGGCAAAATGCG-CAAGCCGAGGATTGACTCGATCCCCCT
29196426 GCGTGCTACA
Statistics
Matches: 208, Mismatches: 46, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 49 0.24
158 132 0.63
159 26 0.12
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGACCGAAG
AGGCAAAATGCGCAAGCCGAGGATTGACTCGATCCCCCTCTACGTGATGTCAATCCTGCTGCCAC
AACCTCGGTTCGGTCTGATCTTAGTCTG
Found at i:29196506 original size:26 final size:26
Alignment explanation
Indices: 29196470--29196522 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29196460 CTAGTCTGAT
* *
29196470 CTTAGATTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29196496 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29196522 C
1 C
29196523 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29196628 original size:696 final size:689
Alignment explanation
Indices: 29195209--29197649 Score: 2231
Period size: 696 Copynumber: 3.5 Consensus size: 689
29195199 GGATCAGCCT
* * * * * * *
29195209 GGTCCCCCCTGCGTGCTGCCGTTCCTGCTACTGGTCTTACTACTGCAACCCTCAGTCCGG-TCCA
1 GGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCTGGTTCCA
* *
29195273 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
66 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
29195338 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGGGGCAAAATGCGCAAGCC-AGGGACCGG
131 CCACAAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAAAATGCGTAAGCCGA-GGACCGA
* * * * * * *
29195402 CCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCTCAACCCTTGGTCCAGTTTGATCTTAGACT
195 CCCGGTCCCCTCTGCATGCTATCGATCCTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACT
* * * * * *
29195467 GGGAATGAACTCCGTATGCCAAATTCAACCCATGAAACAAGCGTTTGGGCGTTGAGCCGGTCGGA
260 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCCGGCCGGA
* *
29195532 GAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTAAGTTCTGTCAATCCCGCTGCCA
325 GAGGCATAATGCGCAAGCCAGGGATC-GCCCGATCCCCCTCTACGTGCTGTCAATCCCGCTGCCA
** * *
29195597 CAATACTCGGTCC-AGCTGGGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCATTA
389 CAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAA-CCATGA
* ** * * *
29195661 AACGGGCGTGCGGGTGCTCAACCGGCAGGAGAGGCCAGTCGAAGAGGCATAATGCGCAAGCTAGG
451 AACGGGCGTGC-GG-G--C-A-C-TCAGCCGA---C-G--GAAGAGGTAGAATGCGCAAGCCAGG
** * *
29195726 GATCAGCCCAGTCCCCCTCTGCGTGCTATCGATCCCGCTGTCG-ATCCT-G-CTA--C-CA-C--
503 GATCAGCCCA-TCCCCC-CTGCGTGCTA-CGATCCTACTGTCGCAACCTCGTCTAGTCTAATCTT
* * ** * *
29195782 A-ACCCGCGG--TCCGACT--G-GGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
565 AGA-CTG-GGAATGC-ACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACC
* ** * * *
29195840 CATGAAACGAGCGTGCGGGCGCTCAGCCAATCGGGGAGGCAAAATGCACAAGCCCGGGATCGACC
626 CATGAAACGAGCGTGCGGGCGCTCCGCCAGCCGGAGAGGCAGAATGCACAAG-CCGGGATTGACC
* * * * **
29195905 TAG-CCCCCCTGTGTGTTGTCGATCCTGCTGCTGGTCCTACTGCCGCAACCCTCGGTCTGGTTTG
1 -GGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCTGGTTCC
*
29195969 AA-CTTAGACTGGGAATGAACTCCGTATGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAA
65 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
29196033 CCCACGAAACGAGCGTGCAGGTGCTCAACCGGCCGAAGAGGCAAAATGCGTAAGCCGAGGATTGA
130 CCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAAAATGCGTAAGCCGAGGACCGA
* * * * *
29196098 CTCGGTCTCCCTCTGCGTGCTGTCGATCCTGCTGTCACAA-CCTCGGTTCGGTCTGATCTTAGTC
195 CCCGGTC-CCCTCTGCATGCTATCGATCCTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGAC
* * * * * *
29196162 TGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGTTGAGCCGACCGG
259 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCCGGCCGG
* * * ** *
29196227 AGAGGC-TAATGCGCAAGCCGGGGATCTGCCTGATCCCCCTCTACGTGATGTCAATTTCGTTGCC
324 AGAGGCATAATGCGCAAGCCAGGGATC-GCCCGATCCCCCTCTACGTGCTGTCAATCCCGCTGCC
* *
29196291 ACAACCCTCGGTCCGACTGCGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACGA
388 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACC-ATGA
* *
29196356 AACGGGCGTGCGGGCACTCAGCCGACGGAAGAGGTAGAATG-GACAAGCCGGGGATCAACCCGAT
451 AACGGGCGTGCGGGCACTCAGCCGACGGAAGAGGTAGAATGCG-CAAGCCAGGGATCAGCCC-AT
* *
29196420 -CCCCCTGCGTGCTACAGATCCTACTGTCGCAACCTTCGATCTAGTCTGATCTTAGATTGGGAAT
514 CCCCCCTGCGTGCTAC-GATCCTACTGTCGCAACC-TCG-TCTAGTCTAATCTTAGACTGGGAAT
* *
29196484 GCACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTA
576 GCACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * * *
29196549 CGGGCGCTCCGCCAGCCAGAGAGGTAGAATGCATAAGCCGTGGTTTGACTC
641 CGGGCGCTCCGCCAGCCGGAGAGGCAGAATGCACAAGCCG-GGATTGAC-C
* * * * * *
29196600 GGTCCCCCATTGCGTGCTGTCAATCCTGCTGCAT-GTTCTGCTACCGCAACCCGCGGTCT-GATC
1 GGTCCCCC-CTGCGTGCTGTCGATCCTGCTGC-TGGTCCTACTACCGCAACCCTCGGTCTGGTTC
*
29196663 CAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
64 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
29196728 ACCCACGAAACGAGCGTGCGGGAGCTCAACCGGCCGGAGAGGCAGAATGCCTAAGCCGGGGACCG
129 ACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAAAATGCGTAAGCCGAGGACCG
* * * * ** * * *
29196793 GCCTGGTCCCCTCTGCATGCTGTCGATGCACCTATCACAACCCTTGGTCTGGTCTGATCTTAGAC
194 ACCCGGTCCCCTCTGCATGCTATCGATCCTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGAC
* * ** *
29196858 TCGGAATGAACTCTGTATGCCTAAGTCAACCC-CTGAAATGAGCGTTCGGGCGCTGAGCTGGCCG
259 TGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACAAGCGTTCGGGCGCTGAGCCGGCCG
* * * * * **
29196922 AAGAGGCATAATGCGCAA-CTCAGGCATCAGCCCGGTCCTCCTCTGCGTGCTGTCGGTCCCGCTG
323 GAGAGGCATAATGCGCAAGC-CAGGGATC-GCCCGATCCCCCTCTACGTGCTGTCAATCCCGCTG
***
29196986 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAA--CC-A-----AA--CGGGCATG-
386 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCATGA
* * * * * *
29197040 --C-GG-GTGC--TCAGTCAACC-A--G-AGAGGTAGAATGCGCACGCCTGGGATCGGCCCAATC
451 AACGGGCGTGCGGGCACTCAGCCGACGGAAGAGGTAGAATGCGCAAGCCAGGGATCAGCCC-ATC
* * * *
29197095 CCCCCTGCGTGTTGCCGATCTTACT-TCCGCAACCCTCGGTC-CGTTCTAATCTTAGACTGGGAA
515 CCCCCTGCGTGCT-ACGATCCTACTGT-CGCAA-CCTC-GTCTAG-TCTAATCTTAGACTGGGAA
* *
29197158 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
575 TGCACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* * * * *
29197223 GCAGGTGCTCAGTCGACCGGAGAGGTTGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCC
640 GCGGGCGCTC---CG-CC----A-----GCCGGAGAGGCAGAATGCACAAGC-CGGGATT-GACC
* * * * * * * *
29197288 GATCCTTCGCTACGTGCTGTCGATCCTCCGGCTGGTCCTGCTGCCGCAACCCTCGGTCTGG-TCC
1 GGTCC-CCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCTGGTTCC
* * * *
29197352 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCTAA
65 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* *** * * * *
29197417 CCCACAAAACGAGCGTACGGGCGCTCTGTCGGCC-AGAGAGGCAGAATGCGTAAGTCGGGGACCA
130 CCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCGA-AGAGGCAAAATGCGTAAGCCGAGGACCG
* ** * *
29197481 ACCCGATCCCC-CTGCATGCTATCGATCCTGCTG-CGTAACCCTCGATCCGGTCCGATCTTAGAC
194 ACCCGGTCCCCTCTGCATGCTATCGATCCTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGAC
* * * *
29197544 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATCCGGGAGCTGAGCCGGCCGG
259 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCCGGCCGG
* * * *
29197609 AGAGGTATAATGCGTAAGCCGGGGATCGGCTCGATCCCCCT
324 AGAGGCATAATGCGCAAGCCAGGGATC-GCCCGATCCCCCT
29197650 ACGCCTTCAT
Statistics
Matches: 1439, Mismatches: 240, Indels: 141
0.79 0.13 0.08
Matches are distributed among these distances:
674 30 0.02
675 117 0.08
676 4 0.00
677 1 0.00
678 9 0.01
679 3 0.00
680 25 0.02
681 10 0.01
682 30 0.02
683 3 0.00
684 1 0.00
685 6 0.00
686 110 0.08
687 21 0.01
688 201 0.14
689 7 0.00
690 3 0.00
691 6 0.00
692 3 0.00
693 7 0.00
694 90 0.06
695 151 0.10
696 486 0.34
697 115 0.08
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (689 bp):
GGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCTGGTTCCA
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAAAATGCGTAAGCCGAGGACCGAC
CCGGTCCCCTCTGCATGCTATCGATCCTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCCGGCCGGAG
AGGCATAATGCGCAAGCCAGGGATCGCCCGATCCCCCTCTACGTGCTGTCAATCCCGCTGCCACA
ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCATGAAACGG
GCGTGCGGGCACTCAGCCGACGGAAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCATCCCCCCT
GCGTGCTACGATCCTACTGTCGCAACCTCGTCTAGTCTAATCTTAGACTGGGAATGCACTCCGTA
TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCC
GCCAGCCGGAGAGGCAGAATGCACAAGCCGGGATTGACC
Found at i:29197175 original size:26 final size:26
Alignment explanation
Indices: 29197145--29197197 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29197135 CCGTTCTAAT
29197145 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29197171 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29197197 C
1 C
29197198 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29197384 original size:26 final size:26
Alignment explanation
Indices: 29197355--29197407 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29197345 CTGGTCCGAT
29197355 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
29197381 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
29197407 C
1 C
29197408 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:29200966 original size:26 final size:26
Alignment explanation
Indices: 29200937--29200989 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29200927 GTTGGCTTAG
* *
29200937 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
29200963 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
29200989 G
1 G
29200990 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:29202131 original size:882 final size:882
Alignment explanation
Indices: 29200390--29202722 Score: 3579
Period size: 882 Copynumber: 2.6 Consensus size: 882
29200380 TGCCTCTTTG
* *
29200390 GTCGGCTGAGTGCCCGCA-CGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
1 GTCGGTTGAGCGCCCG-AGCGCTCGTTTTGTGGGTTG-CTTAGGCATACAGAGTTCATCCCCAGT
* * * * * * * * **
29200454 CTAAGCATATGTAGTTCATTCCCTA-TCTAAGATCGGGTCGGACTGAGGGTGGCGGCAGTAGGAT
64 CTAAGCATATGGAGTTCATTCCC-AGTGTAGGATCAGATCGGACCGAGGGTCGTGGCAACAGGAT
* * * ** * * * * * * * * ** * *
29200518 CAACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACACATTCCACCTTTTCGGCCGGTTGA
128 CGACAGCAAGTACCGAGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCTACTGGCTGA
* *
29200583 GCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
193 GCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
29200648 GCCGGATCGAGGGTTGTGGTAGTGGGACCAGTAACATGCAGAGGTGGACCGGGTCGATCCTCGGC
258 GCCGGATCGAGGGTTGTGGTAGTGGGACCAGTAACATGCAGAGGTGGACCGGGTCGATCCTCGGC
29200713 TTGCGATTATGCCTCTTCGGCCAGCTCAGTACCCACACGCTTGTTTCATGGGTTAACTTAGGCAT
323 TTGCGATTATGCCTCTTCGGCCAGCTCAGTACCCACACGCTTGTTTCATGGGTTAACTTAGGCAT
29200778 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCATGATCGACACCAC
388 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCATGATCGACACCAC
29200843 ATAGGTGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGCCAGCTGAGCGCCCGC
453 ATAGGTGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGCCAGCTGAGCGCCCGC
*
29200908 ACGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAG
518 ACGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAG
* * *
29200973 CTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGACCAACAGTAGAATCGG
583 CTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCAACAGTAGAATCGA
* * *
29201038 TAGTACATAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCCCTCCGACCGGCTGAGCG
648 CAGTACATAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGACCGGCTGAGCG
*
29201103 CCCGCACGCTCATTTCATGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCC
713 CCCGCACGCTCATTTCATGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACC
* *
29201168 GGATCAAGGGTTGTGGCAGCAGGACCGGTAGCGGGATTGGCAGCACCGAGGGGGATCAAGCTGAC
778 GGATCAAGGGTTGTGGCAGCAGGACCGGTAGCGAGATTGGCAGCACCGAGGGGGACCAAGCTGAC
* *
29201233 CCCCGACTTACGCATTATGCCTCTTCGGCCAGCATGTCCA
843 CCCCGACTTACGCATTATGCCTCTTCGACCAGCATCTCCA
** *
29201273 GTCGGTTGAGCGCCCGAGCGCTCGTTTTGTGTCTTGCTTAGGCATACGGAGTTCATCCCCAGTCT
1 GTCGGTTGAGCGCCCGAGCGCTCGTTTTGTGGGTTGCTTAGGCATACAGAGTTCATCCCCAGTCT
29201338 AAGCATATGGAGTTCATTCCCAGTGTAGGATCAGATCGGACCGAGGGTCGTGGCAACAGGATCGA
66 AAGCATATGGAGTTCATTCCCAGTGTAGGATCAGATCGGACCGAGGGTCGTGGCAACAGGATCGA
29201403 CAGCAAGTACCGAGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCTACTGGCTGAGCG
131 CAGCAAGTACCGAGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCTACTGGCTGAGCG
29201468 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
196 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
29201533 GGATCGAGGGTTGTGGTAGTGGGACCAGTAACATGCAGAGGTGGACCGGGTCGATCCTCGGCTTG
261 GGATCGAGGGTTGTGGTAGTGGGACCAGTAACATGCAGAGGTGGACCGGGTCGATCCTCGGCTTG
29201598 CGATTATGCCTCTTCGGCCAGCTCAGTACCCACACGCTTGTTTCATGGGTTAACTTAGGCATACG
326 CGATTATGCCTCTTCGGCCAGCTCAGTACCCACACGCTTGTTTCATGGGTTAACTTAGGCATACG
29201663 GAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCATGATCGACACCACATA
391 GAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCATGATCGACACCACATA
29201728 GGTGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGCCAGCTGAGCGCCCGCACG
456 GGTGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGCCAGCTGAGCGCCCGCACG
*
29201793 CATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTTC
521 CATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGCTC
* * *
29201858 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCAACGGTAGAGTTGACAG
586 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCAACAGTAGAATCGACAG
* *
29201923 TACATAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGACCGGTTGAGCGCCC
651 TACATAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGACCGGCTGAGCGCCC
* * *
29201988 GCACGCTCGTTTCATTGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCTCAACCGGA
716 GCACGCTCATTTCATGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGA
* * **
29202053 TCGAGGGTTGTGGCAGCAGGATCGGTAGCGAGATTGGCAGCACCGAGGGGGACCGGGCTGACCCC
781 TCAAGGGTTGTGGCAGCAGGACCGGTAGCGAGATTGGCAGCACCGAGGGGGACCAAGCTGACCCC
*
29202118 CGACTTGCGCATTATGCCTCTTCGACCAGCATCTCCA
846 CGACTTACGCATTATGCCTCTTCGACCAGCATCTCCA
*
29202155 GTCGGTTGAGCGCCCGAGCGCTCGTTTCGTGGGTTGCTTAGGCATACAGAGTTCATCCCCAGTCT
1 GTCGGTTGAGCGCCCGAGCGCTCGTTTTGTGGGTTGCTTAGGCATACAGAGTTCATCCCCAGTCT
29202220 AAGCATATGGAGTTCATTCCCAGTGTAGGATCAGATCGGACCGAGGGTCGTGGCAACAGGATCGA
66 AAGCATATGGAGTTCATTCCCAGTGTAGGATCAGATCGGACCGAGGGTCGTGGCAACAGGATCGA
29202285 CAGCAAGTACCGAGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCTACTGGCTGAGCG
131 CAGCAAGTACCGAGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCTACTGGCTGAGCG
29202350 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
196 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * * * *
29202415 AGACCGAGGGTTGTGGCAGCT-GGACCAGCAGCACGCAGAGGGGGACTGGGCCGATCC-CTGGCT
261 GGATCGAGGGTTGTGGTAG-TGGGACCAGTAACATGCAGAGGTGGACCGGGTCGATCCTC-GGCT
* * * * * * * * * * *
29202478 TGCGCATTATGCCTCTCCAGTCGGCTCAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTATGCAT
324 TGCG-ATTATGCCTCTTCGGCCAGCTCAGTACCCACACGCTTGTTTCATGGGTTAACTTAGGCAT
* * * * * * * * * *
29202543 ATGGAGATCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGACCGCAGGACCGACAGCAC
388 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCATGATCGACACCAC
* * * * * * ** * *
29202608 ACAGG-GGGGATC-GAGCCGGTCCCCGGCTTGCGCATTCTACCTCTTCGATCGGCTGAGCACCCG
453 ATAGGTGGGGATCAG-GCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGCCAGCTGAGCGCCCG
* * * * *
29202671 TACGC---CT-ATTTTGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAA
517 CACGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
29202723 ACCCCAGCCG
Statistics
Matches: 1335, Mismatches: 109, Indels: 17
0.91 0.07 0.01
Matches are distributed among these distances:
878 41 0.03
879 2 0.00
881 3 0.00
882 1150 0.86
883 139 0.10
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (882 bp):
GTCGGTTGAGCGCCCGAGCGCTCGTTTTGTGGGTTGCTTAGGCATACAGAGTTCATCCCCAGTCT
AAGCATATGGAGTTCATTCCCAGTGTAGGATCAGATCGGACCGAGGGTCGTGGCAACAGGATCGA
CAGCAAGTACCGAGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCTACTGGCTGAGCG
CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
GGATCGAGGGTTGTGGTAGTGGGACCAGTAACATGCAGAGGTGGACCGGGTCGATCCTCGGCTTG
CGATTATGCCTCTTCGGCCAGCTCAGTACCCACACGCTTGTTTCATGGGTTAACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCATGATCGACACCACATA
GGTGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGCCAGCTGAGCGCCCGCACG
CATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGCTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCAACAGTAGAATCGACAG
TACATAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCCCTCCGACCGGCTGAGCGCCC
GCACGCTCATTTCATGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGA
TCAAGGGTTGTGGCAGCAGGACCGGTAGCGAGATTGGCAGCACCGAGGGGGACCAAGCTGACCCC
CGACTTACGCATTATGCCTCTTCGACCAGCATCTCCA
Found at i:29202701 original size:158 final size:162
Alignment explanation
Indices: 29202305--29203198 Score: 705
Period size: 158 Copynumber: 5.6 Consensus size: 162
29202295 CGAGGACCGG
* * * * * * * * *
29202305 GCCGATCCTCGGCTTGCGCATTCTACCTCTCCTA-CTGGCTGAGCGCCCGCATGCC-CGTTTCAT
1 GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC-GGCTGAGCACCCGTACGCCTCATTTCGT
* * * * * *
29202368 GGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGG
65 GGGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCGAGCCGGACCGAGGGTTGCGA
* *
29202431 CAGCTGGACC-AGCAGCACGCAGAGGGGGA-CTGG
130 CAGCAGGACCGA-CAGCACGCAGAGGGGGATC-GA
* * * * *
29202464 GCCGATCCCTGGCTTGCGCATTATGCCTC-TCCAGTCGGCTCAGCACCCG--CGCGCTCGTTTCG
1 GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGA-TCGGCTGAGCACCCGTACGC-CTCATTTCG
* * * * * * *
29202526 TGGGTTGACTTATGCATATGGAGATCATTCCCA-ATCTAAGATCGGA-CCGAACCGAGGGTTGCG
64 TGGGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCGAGCCGGACCGAGGGTTGCG
* *
29202589 ACCGCAGGACCGACAGCACACAG-GGGGGATCGA
129 ACAGCAGGACCGACAGCACGCAGAGGGGGATCGA
* * *
29202622 GCCGGTCCCCGGCTTGCGCATTCTACCTCTTCGATCGGCTGAGCACCCGTACGCCT-ATTTTGTG
1 GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGTACGCCTCATTTCGTG
* * * * *
29202686 GGTTGTCTTAGGCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGCCGGACCGAGGGTTGTGGC
66 GGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCGAGCCGGACCGAGGGTTGCGAC
* * ** *
29202749 AGCGGGAGCGGTAGCACGCAGAGGGGGA-CCA
131 AGCAGGACCGACAGCACGCAGAGGGGGATCGA
* * * * * * * * *
29202780 GGCCGATCCTCGGCTTACGCAGTCTGCCTCTCCGGTTGGTTGAGCACCCGCACGCCT--TTTTGT
1 -GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGTACGCCTCATTTCGT
* * * * * *
29202843 GGGTTGGCTTAGGCATAGGGCGTTCATT-CCATGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGG
65 GGGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCGAGCCGGACCGAGGGTTGCGA
** * *
29202906 CAGTGGGACCGACAACACGCAGAGGGGGACCG-
130 CAGCAGGACCGACAGCACGCAGAGGGGGATCGA
* * * * * * * *
29202938 GACCGATCCCCTGCTTACGCATTATGCCT-TTCCACCTGGCTCAGCGCCC-TCAC-ACTCATTTC
1 G-CCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC-GGCTGAGCACCCGT-ACGCCTCATTTC
* * * * * *
29203000 GTGTGTTGACTCAGGCATACGGAGTTCATTCCTA-GTCTAAGATCAGA-CTGGACCGAGGGTTGC
63 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCGAGCCGGACCGAGGGTTGC
*
29203063 GACAGCAGGACCGACAGCACGCAG-GGGGGATCGG
128 GACAGCAGGACCGACAGCACGCAGAGGGGGATCGA
* * * * * * * *
29203097 GCCTATCCCCGACTTGCGCATTCTGCCTC-TCTGACCGGTTGAACGCCTGTACG-CTCGTTTCGT
1 GCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GATCGGCTGAGCACCCGTACGCCTCATTTCGT
*
29203160 GGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
65 GGGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAG
29203199 CATACAGAGT
Statistics
Matches: 588, Mismatches: 117, Indels: 61
0.77 0.15 0.08
Matches are distributed among these distances:
157 15 0.03
158 322 0.55
159 237 0.40
160 14 0.02
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.23
Consensus pattern (162 bp):
GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGTACGCCTCATTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCGAGCCGGACCGAGGGTTGCGAC
AGCAGGACCGACAGCACGCAGAGGGGGATCGA
Found at i:29203018 original size:317 final size:316
Alignment explanation
Indices: 29202298--29203199 Score: 847
Period size: 317 Copynumber: 2.8 Consensus size: 316
29202288 CAAGTACCGA
* * * * * * * * ** **
29202298 GGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTC-TCCTACTGGCTGAGCGCCCGCATGCCCG
1 GGACCGAGCCGATCCCCGGCTTACGCATTATACCTCTTCC-ACCGGCTCAGCACCCGTACACCTA
* * * * *
29202362 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
65 TTTCGTGGGTTGACTCAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTT
* * * *
29202427 GTGGCAGCTGGACCAGCAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCT
130 GTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTGCCT
* * * * * * * *
29202492 CTCCAGTCGGCTCAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTATGCATATGGAGATCATTCC
194 CTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-C
* ** * * *
29202557 CA-ATCTAAGATCGGACCGAACCGAGGGTTGCGACCGCAGGACCGACAGCACACAGGGG
258 CATGTCTAAGCCCAGACCGAACCGAGGGTTGCGACAGCAGGACCGACAACACACAGGGG
* * * * * * * *
29202615 GGATCGAGCCGGTCCCCGGCTTGCGCATTCTACCTCTTCGATCGGCTGAGCACCCGTACGCCTAT
1 GGACCGAGCCGATCCCCGGCTTACGCATTATACCTCTTCCACCGGCTCAGCACCCGTACACCTAT
* * *
29202680 TTTGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTG
66 TTCGTGGGTTGACTCAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTG
* * * * * *
29202745 TGGCAGCGGGAGCGGTAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTACGCAGTCTGCCTC
131 TGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCC-CGGCTTGCGCATTCTGCCTC
* * * * *
29202810 TCCGGTTGGTTGAGCACCCGCACGC-CTTTTTGTGGGTTGGCTTAGGCATAGGGCGTTCATTCCA
195 TCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * ** *
29202874 TGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGTGGGACCGACAACACGCAGAGGG
260 TGTCTAAGCCC-AGACCGAACCGAGGGTTGCGACAGCAGGACCGACAACACACAG-GGG
* * *
29202932 GGACCG-GACCGATCCCCTGCTTACGCATTATGCCT-TTCCACCTGGCTCAGCGCCC-T-CACAC
1 GGACCGAG-CCGATCCCCGGCTTACGCATTATACCTCTTCCACC-GGCTCAGCACCCGTACAC-C
* * * *
29202993 TCATTTCGTGTGTTGACTCAGGCATACGGAGTTCATTCC-TAGTCTAAGA--TCAGACTGGACCG
63 T-ATTTCGTGGGTTGACTCAGGCATAGGGAGTTCATTCCAT-GTCTAA-ACCCCAG-CCGGACCG
* * * * * *
29203055 AGGGTTGCGACAGCAGGACCGACAGCACGCAG-GGGGGATCGGGCCTATCCCCGACTTGCGCATT
124 AGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGAT-CCCGGCTTGCGCATT
* ** * * * *
29203119 CTGCCTCTCTGACCGGTTGAACGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
188 CTGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
29203184 CATTCCATGTCTAAGC
253 CATTCCATGTCTAAGC
29203200 ATACAGAGTT
Statistics
Matches: 479, Mismatches: 92, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
315 5 0.01
316 128 0.27
317 342 0.71
318 4 0.01
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (316 bp):
GGACCGAGCCGATCCCCGGCTTACGCATTATACCTCTTCCACCGGCTCAGCACCCGTACACCTAT
TTCGTGGGTTGACTCAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTG
TGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCT
CCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCAGACCGAACCGAGGGTTGCGACAGCAGGACCGACAACACACAGGGG
Found at i:29203118 original size:475 final size:476
Alignment explanation
Indices: 29202298--29203197 Score: 1220
Period size: 475 Copynumber: 1.9 Consensus size: 476
29202288 CAAGTACCGA
* * * * * *
29202298 GGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCTACTGGCTGAGCGCCCGCATGCCCGT
1 GGACCAGGCCGATCCTCGGCTTACGCAGTCTACCTCTCCGACTGGCTGAGCACCCGCACGCCCGT
29202363 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
66 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
* * * *
29202428 TGGCAGCTGGACCAGCAGCACGCAGAGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTC
131 TGGCAGCTGGACCAGCAACACGCAGAGGGGGACCGGACCGATCCCTGGCTTACGCATTATGCCTC
* * * * * * *
29202493 TCCAGTCGGCTCAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTATGCATATGGAGATCATTCCC
196 TCCACTCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTCAGGCATACGGAGATCATTCCC
* *
29202558 AATCTAAGATCGGACCGAACCGAGGGTTGCGACCGCAGGACCGACAGCACACAGGGGGGATCGAG
261 AATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGACCGACAGCACACAGGGGGGATCGAG
* * * * *
29202623 CCGGTCCCCGGCTTGCGCATTCTACCTCT-TCGATCGGCTGAGCACCCGTACGC-CTATTTTGTG
326 CCGATCCCCGACTTGCGCATTCTACCTCTCT-GACCGGCTGAACACCCGTACGCTC-ATTTCGTG
* *
29202686 GGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAG
389 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAG
29202751 CGGGAGCGGTAGCACGCAGAGGG
454 CGGGAGCGGTAGCACGCAGAGGG
* ** * *
29202774 GGACCAGGCCGATCCTCGGCTTACGCAGTCTGCCTCTCCGGTTGGTTGAGCACCCGCACG-CCTT
1 GGACCAGGCCGATCCTCGGCTTACGCAGTCTACCTCTCCGACTGGCTGAGCACCCGCACGCCCGT
** * * *
29202838 TTTGTGGGTTGGCTTAGGCATAGGGCGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTG
66 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
29202903 TGGCAG-TGGGACC-GACAACACGCAGAGGGGGACCGGACCGATCCCCT-GCTTACGCATTATGC
131 TGGCAGCT-GGACCAG-CAACACGCAGAGGGGGACCGGACCGAT-CCCTGGCTTACGCATTATGC
* * * * *
29202965 CTTTCCAC-CTGGCTCAGCGCCCTCACACTCATTTCGTGTGTTGACTCAGGCATACGGAGTTCAT
193 CTCTCCACTC-GGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTCAGGCATACGGAGATCAT
* * * * *
29203029 TCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGAT
257 TCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGACCGACAGCACACAGGGGGGAT
* * * * * * *
29203094 CGGGCCTATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGTTGAACGCCTGTACGCTCGTTTCG
322 CGAGCCGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTGAACACCCGTACGCTCATTTCG
29203159 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
387 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
29203198 GCATACAGAG
Statistics
Matches: 365, Mismatches: 53, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
474 3 0.01
475 306 0.84
476 56 0.15
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (476 bp):
GGACCAGGCCGATCCTCGGCTTACGCAGTCTACCTCTCCGACTGGCTGAGCACCCGCACGCCCGT
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
TGGCAGCTGGACCAGCAACACGCAGAGGGGGACCGGACCGATCCCTGGCTTACGCATTATGCCTC
TCCACTCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTCAGGCATACGGAGATCATTCCC
AATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGACCGACAGCACACAGGGGGGATCGAG
CCGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTGAACACCCGTACGCTCATTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAGCG
GGAGCGGTAGCACGCAGAGGG
Found at i:29203201 original size:26 final size:26
Alignment explanation
Indices: 29203172--29203224 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29203162 GTTGGCTTAG
*
29203172 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29203198 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29203224 G
1 G
29203225 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29203645 original size:355 final size:349
Alignment explanation
Indices: 29202915--29203908 Score: 887
Period size: 355 Copynumber: 2.8 Consensus size: 349
29202905 GCAGTGGGAC
* * * * * * * *
29202915 CGACAACACGCAGAGGGGGACCGGACCGATCCCCTG-CTTACGCATTATGCCTTTCCACCT-GGC
1 CGACAGCACGCAGAGGGGGATCGGGCCGATCCCC-GACTTACGCATTCTACCTCTCCA-GTAGAC
* * * * * * * *
29202978 TCAGCGCCCTCACACTCATTTCGTGTGTT-GACTCAGGCATACGGAGTTCATTCC-TAGTCTAAG
64 TGAGCGCCCGCACACCCGTTTCATGGGTTGGA-TTAGGCATACGGAGTTCATTCCAT-GCCTAAG
** * * *
29203041 -ATCAGACTGGACCGAGGGTTGC-GACAGC-AGGACCGACAGCACGCAG-GGGGGATCGGGCCT-
127 CCCCAG-CCGGACTGAGGGTT-CTGGCAGCGA-GACCGACAGCACGCAGAGGGGGATCGGG-CTG
* * * * * * *
29203101 ATCCCCGACTTGCGCATTCTGCCTC-TCTGACCGGTTGAACGCCTGTACGCTCGTTTCGTGGGTT
188 ATCCCCGGCTTGCACATTATGCCTCTTC-GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
29203165 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
252 GACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
* *
29203230 ATCGGACTGAAAGTTGCGGTAGTAGGACCAGCAGTAGGAT
316 ATCGGACCG-AA--TGCGGTA-TA-GA-CAGCAGCAGGAT
* * *
29203270 CGACAGCACGCAGAGGGGGATTGGGCCGATCCTCGACTTACGCATTCTACCTCTCCAGTAGATTG
1 CGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCAGTAGACTG
* *
29203335 AGCGCCCGCACACTCGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGCCTAAGCCCC
66 AGCGCCCGCACACCCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGCCTAAGCCCC
* * * *
29203400 AGCCGGATTGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATTGACAGCACGCAGAGGGGGA-CTG
131 AGCCGGACTGAGGGTTCTGGCAGC--G---AG-A-C-----CGACAGCACGCAGAGGGGGATCGG
*
29203464 GCTGATCCCCGGCTTGCACATTATGCCTCTTCGACCGGACTGAGCGCCCGCACGCTCGTTTCATG
184 GCTGATCCCCGGCTTGCACATTATGCCTCTTCGACCGG-CTGAGCGCCCGCACGCTCGTTTCGTG
* ** *
29203529 GGTTGACTTAGGCATACGGAGTTCATCCCCAGGCTAAGCATATGGAGTTCATTTCCAGTCTAAGA
248 GGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
*
29203594 TCGGAAT-GGACCG-A-G-GGT-T-G-CGGCAGCAGGAT
312 TCGG-ATCGGACCGAATGCGGTATAGACAGCAGCAGGAT
* * * * ** * * *
29203626 CGGA-GGCATGCAG-GGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCAGTCGGCT
1 C-GACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCAGTAGACT
* * * * * * *
29203689 GAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGATTTCATTCGATGTCTAAGCCC
65 GAGCGCCCGCACACCCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGCCTAAGCCC
* *
29203754 CAGTCGGACTGAGGGTTCTGGCAGCGAGACCGACAGCACGCAGA-GGGGATCGGGCCGATCCCCG
130 CAGCCGGACTGAGGGTTCTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCG
* * * * * * * *
29203818 GCTTGCACATTATGCCTCTTCGGCCAGCTCAGTGCTCGGACGCTCGTTTTGTGGGTTGACCTAGG
195 GCTTGCACATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
29203883 CATACGGAGTTCATTCCCAGTCTAAG
260 CATACGGAGTTCA-TCCCAGTCTAAG
29203909 AAACAACCGG
Statistics
Matches: 531, Mismatches: 80, Indels: 69
0.78 0.12 0.10
Matches are distributed among these distances:
342 59 0.11
343 51 0.10
348 1 0.00
349 1 0.00
350 2 0.00
353 1 0.00
354 2 0.00
355 234 0.44
356 24 0.05
357 2 0.00
358 1 0.00
360 2 0.00
361 2 0.00
362 4 0.01
363 1 0.00
366 3 0.01
367 43 0.08
368 93 0.18
369 5 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (349 bp):
CGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCAGTAGACTG
AGCGCCCGCACACCCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGCCTAAGCCCC
AGCCGGACTGAGGGTTCTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGG
CTTGCACATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA
ATGCGGTATAGACAGCAGCAGGAT
Found at i:29204086 original size:161 final size:156
Alignment explanation
Indices: 29203601--29204101 Score: 502
Period size: 158 Copynumber: 3.1 Consensus size: 156
29203591 AGATCGGAAT
*
29203601 GGACCGAGGGTTGCGGCAGCAGGATCGGAGGCATGCAGGGGGGATCGGGCTGATCCCCGGCTTGT
1 GGACCGAGGGTT-CGGCAGCAGGATC-GAGGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGT
* * * * *
29203666 GCATTCTGCCTCTCCAGTCGGCTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
64 GCATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * **
29203731 GATTTCATTCGATGTCTAAGCCCCAGTC
129 GAGTTCATTCCATGTCTAAGCCCCAACC
* * * * *
29203759 GGACTGAGGGTTCTGGCAGC-GAGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTG
1 GGACCGAGGGTTC-GGCAGCAG-GATCGA-GGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTG
** * * * * * * * * * * *
29203823 CACATTATGCCTCTTCGGCCAGCTCAGTGCTCGGACGCTCGTTTTGTGGGTTGACCTAGGCATAC
63 TGCATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
***
29203888 GGAGTTCATTCCCA-GTCTAAGAAACAACC
128 GGAGTTCATT-CCATGTCTAAGCCCCAACC
* * * *
29203917 GGACCGAGGGTTACGGTAGCAGGATCGATGGCATGCAAGGGAGGGACCGGAGCCGATCCTCGGTT
1 GGACCGAGGGTT-CGGCAGCAGGATCGA-GGCATGC-AGGG-GGGATCGG-GCCGATCCCCGGCT
* * * *
29203982 TGTGCATTCTGCCTCTCCAGTCGGCTGAATGCCCGTACACTCATTTCGTGGGTTGGCTTAGGCAT
61 TGTGCATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
29204047 ACGGAGTTCATTCCATGTCTAAGCCCCAACC
126 ACGGAGTTCATTCCATGTCTAAGCCCCAACC
** *
29204078 AAACCGAGGGTTGTGGCAGCAGGA
1 GGACCGAGGGTT-CGGCAGCAGGA
29204102 CCGACAGCGC
Statistics
Matches: 268, Mismatches: 65, Indels: 17
0.77 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 143 0.53
159 7 0.03
160 10 0.04
161 104 0.39
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (156 bp):
GGACCGAGGGTTCGGCAGCAGGATCGAGGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGC
ATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAACC
Found at i:29204542 original size:159 final size:159
Alignment explanation
Indices: 29204304--29204756 Score: 502
Period size: 159 Copynumber: 2.8 Consensus size: 159
29204294 GGGTTACGGT
* * * * **
29204304 AGCAGGATCGATAGCATGCAGGGGGGACCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGG
1 AGCAGGATGGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGG
* * * * *
29204369 TCGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 TCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
29204434 AAGCCCCAG-CCAGACCGAGGGTTGTGGT
131 AAGCACCAGACCAGACCAAGGGTTGTGGC
* * * *
29204462 AGC-GAGACTGG-CAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTGCACATTATGCCTCTT
1 AGCAG-GA-TGGACAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTC
* * * * * * *
29204525 CAGTCGGTTCAGTACCCGCACGGTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCA-
63 CGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CAT
* * *
29204589 GTCTAAG-ATCAGACCGGACCAAGGTTTGTGGC
127 GTCTAAGCACCAGACCAGACCAAGGGTTGTGGC
* ** *
29204621 AGCAGGATGGACAGCACGCCCGGAAGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCG
1 AGCAGGATGGACAGCACG-CAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCG
* * * *
29204686 GCCGGTTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
65 GTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
29204751 TAAGCA
130 TAAGCA
29204757 TACGGAGTTC
Statistics
Matches: 238, Mismatches: 47, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 21 0.09
159 210 0.88
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCAGGATGGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGG
TCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCACCAGACCAGACCAAGGGTTGTGGC
Found at i:29204652 original size:686 final size:673
Alignment explanation
Indices: 29203260--29204755 Score: 1874
Period size: 686 Copynumber: 2.2 Consensus size: 673
29203250 AGTAGGACCA
* * ** * * * *
29203260 GCAGTAGGATCGACAGCACGCAGA-GG-GGGATTGGGCCGATCCTCGACTTACGCATTCTACCTC
1 GCAGCAGGATCGACAGCACGCA-ACGGAAGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC
* * *
29203323 TCCAGTAGATTGAGCGCCCGCACACTCGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCA
65 TCCAGTCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * ** ** * * *
29203388 TGCCTAAGCCCCAGCCGGATTGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATTGACAGCACGCA
130 TGTCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAGGACCAGCAGCGCGATCGACAGCACACA
* * * * *
29203453 GAGGGGGACTGGCTGATCCCCGGCTTGCACATTATGCCTCTTCGACCGGACTGAGCGCCCGCACG
195 GAGGGGGACAGGCTAATCCCCGACTTGCACATTATGCCTCTTCGACCGGACTGAACGCCCACACG
** *
29203518 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGGCTAAGCATATGGAGTTCATTT
260 CTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGGCTAAGCATATGGAGTTCATTC
* * * *
29203583 CCAGTCTAAGATCGGAATGGACCGAGGGTTGCGGCAGCAGGATCGGAGGCATGCAGGGGGGATCG
325 CCAATCTAAGATCGGAATGGACCGAGGGTTACGGCAGCAGGATCGGAAGCATGCAGGGGGGACCG
* * * * *
29203648 GGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCCTGCACGCCCGTTTCATG
390 AGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCCCGTTTCATG
* * * * *
29203713 GGTTGGCTTAGGCATAGGGATTTCATTCGATGTCTAAGCCCCAGTCGGACTGAGGGTTCTGGCAG
455 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTCTGGCAG
* *
29203778 CGAGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGCC
520 CGAGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCACATTATGCCTCTTCAGCC
* * * * *
29203843 AGCTCAGTGCTCGGACGCTCGTTTTGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
585 AGCTCAGTACCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
*
29203908 GAAACAACCGGACCGAGGGTTACG
650 GAAACAACCGGACCAAGGGTTACG
* ** * * * * * *
29203932 GTAGCAGGATCGATGGCATGCAAGGGAGGGACCGGAGCCGATCCTCGGTTTGTGCATTCTGCCTC
1 GCAGCAGGATCGACAGCACGCAACGGAAGGACCGG-GCCGATCCCCGGCTTGCGCATTCTGCCTC
* ** * *
29203997 TCCAGTCGGCTGAATGCCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
65 TCCAGTCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
*
29204062 TGTCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAGGACC-GACAGCGCGATCGACAGCACAT
130 TGTCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAGGACCAG-CAGCGCGATCGACAGCACAC
*
29204126 AGAGGGGGACCAGGCTAAT-CCCGACTTGCACATTATGCCTCTCTGGTCGACCTCTCCGGCTGGC
194 AGAGGGGGA-CAGGCTAATCCCCGACTTGCACATTATG-C-CTCT--TCGA-----CC-G--GAC
* * *
29204190 TGAACGCCCACACGCTTGTTTTATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCA
246 TGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGGCTAAGCA
* * *
29204255 TATGGAGTTCATTCCCAATCTAAGATCGG-ATCGGTCTGAGGGTTACGGTAGCAGGATC-GATAG
311 TATGGAGTTCATTCCCAATCTAAGATCGGAAT-GGACCGAGGGTTACGGCAGCAGGATCGGA-AG
*
29204318 CATGCAGGGGGGACCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACCC
374 CATGCAGGGGGGACCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCACCC
*
29204383 GCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
439 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
* * * * *
29204448 CCGAGGGTTGTGGTAGCGAGACTGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTGCAC
504 CCGAGGGTTCTGGCAGCGAGACCGACAGCACGCAGA-GGGGATCGGGCCGATCCCCAGCTTGCAC
* * * * * *
29204513 ATTATGCCTCTTCAGTCGGTTCAGTACCCGCACGGTCATTTCGTGGGTTGACTTATGCATACGGA
568 ATTATGCCTCTTCAGCCAGCTCAGTACCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACGGA
* * * **
29204578 GTTCATTCTCAGTCTAAG-ATCAGACCGGACCAAGGTTTGTG
633 GTTCATTCCCAGTCTAAGAAACA-ACCGGACCAAGGGTTACG
* * *
29204619 GCAGCAGGATGGACAGCACGC-CCGGAAGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGCAACGGAAGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * *
29204683 CCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCAT
66 CCAGTCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
29204748 GTCTAAGC
131 GTCTAAGC
29204756 ATACGGAGTT
Statistics
Matches: 696, Mismatches: 107, Indels: 29
0.84 0.13 0.03
Matches are distributed among these distances:
671 1 0.00
672 19 0.03
673 7 0.01
674 159 0.23
675 8 0.01
676 4 0.01
678 4 0.01
683 2 0.00
684 1 0.00
685 93 0.13
686 272 0.39
687 126 0.18
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (673 bp):
GCAGCAGGATCGACAGCACGCAACGGAAGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
CCAGTCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAGGACCAGCAGCGCGATCGACAGCACACAG
AGGGGGACAGGCTAATCCCCGACTTGCACATTATGCCTCTTCGACCGGACTGAACGCCCACACGC
TCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGGCTAAGCATATGGAGTTCATTCC
CAATCTAAGATCGGAATGGACCGAGGGTTACGGCAGCAGGATCGGAAGCATGCAGGGGGGACCGA
GCCGATCCCCAGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCCCGTTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTCTGGCAGC
GAGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCACATTATGCCTCTTCAGCCA
GCTCAGTACCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAG
AAACAACCGGACCAAGGGTTACG
Found at i:29204764 original size:26 final size:26
Alignment explanation
Indices: 29204728--29204780 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29204718 GTTGGCTTAG
29204728 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
29204754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29204780 G
1 G
29204781 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29205758 original size:158 final size:157
Alignment explanation
Indices: 29205542--29205977 Score: 448
Period size: 158 Copynumber: 2.8 Consensus size: 157
29205532 ATGGATCGGG
* * * * * * * *
29205542 TCGATCCTCGGCTTGCGCATTCTACCTCTTCGGTTGGCTGAGCGCCCGTATGCCTGTTTCATGGG
1 TCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACGCTTGTTTCATGGG
* * * ** *
29205607 TTGGCTTAGGCATA-GGTAGTTCATTCCATGTGTAAGCCCCAACCAGACCAAGGGTTGTGGCAGC
66 TTGGCTTAGGCATACAG-AGTTCATTCCA-GTCTAAGACCCAACCAGACCAAGGGTTACGACAGC
* *
29205671 GGGACCGGTAGCACGCAGAGGGGGACC-GA
129 AGGACCGATAGCACGCAG-GGGGGACCAGA
* * * * * *
29205700 GCTGATCCTCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCACCCGCA-GCTTGTTTCCTGG
1 TC-GATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACGCTTGTTTCATGG
* * ** **
29205764 GTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGC
65 GTTGGCTTAGGCATACAGAGTTCATTC-CAGTCTAAGACCCAACCAGACCAAGGGTTACGACAGC
* * *
29205829 AGGATCGATAGCACGCAGGGTGGATCAGA
129 AGGACCGATAGCACGCAGGGGGGACCAGA
* * * *
29205858 TCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGACTAAGCGCCCGCACGCTTGTTTCAAGGG
1 TCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACGCTTGTTTCATGGG
* *
29205923 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA-TCAGATCAGACCAAGGGT
66 TTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGACCCA-ACCAGACCAAGGGT
29205978 AGTGGCAGTA
Statistics
Matches: 225, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 47 0.21
158 135 0.60
159 43 0.19
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
TCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACGCTTGTTTCATGGG
TTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGACCCAACCAGACCAAGGGTTACGACAGCAG
GACCGATAGCACGCAGGGGGGACCAGA
Found at i:29206107 original size:170 final size:172
Alignment explanation
Indices: 29205825--29206299 Score: 495
Period size: 170 Copynumber: 2.8 Consensus size: 172
29205815 AGGGTTACGA
** *
29205825 CAGCAGGATCGATAGCACGCAG-G-GTGGATCA-GATCGATCCTCGGCTTGCGCATTCTGCCTCT
1 CAGCAGGATCGGCAGCACGCAGAGAG-GGACCAGGATCGATCCTCGGCTTGCGCATTCTGCCTCT
* * * * * * *
29205887 CTGACCGACTAAGCGCCCGCACGCTTGTTTCAAGGGTTGGCTTAGGCATACAGAGTTCATTCCCA
65 CCGGCCAACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA
* *
29205952 GTCTAAGATC-AGATCAG-ACCAAGGGTAGTGGCAGTAGGACCAG
130 GTCTAAGACCTAG--CAGAACCAAGGGTAGTGGCAGCAGGACCAG
* * * * *
29205995 CAGCAGGATCGGCAGCACTCAGAG-GGTACC-GGATCGATCCTCGACTCGCGGATTCTGCCTCTC
1 CAGCAGGATCGGCAGCACGCAGAGAGGGACCAGGATCGATCCTCGGCTTGCGCATTCTGCCTCTC
* * *
29206058 CGGCCAACTGAGCGCCTGCACGCTCGTTTCGTTGGTTGGCTGAGGCATACAGAGTTCATT-CCAT
66 CGGCCAACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-
* * * * * *
29206122 GTCTAAGCCCTAGCCGAACCGAGGGTTGTGGTAGCAGGACCGG
130 GTCTAAGACCTAGCAGAACCAAGGGTAGTGGCAGCAGGACCAG
* * * * *
29206165 CAGCGGGATGGGCAGCACGCAGAGAGGGACCAGGCT-GATCC-CTGGCTTACGCATTATGCCTCT
1 CAGCAGGATCGGCAGCACGCAGAGAGGGACCAGGATCGATCCTC-GGCTTGCGCATTCTGCCTCT
* * * * *
29206228 CCGGTCAGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCATCCCC
65 CCGGCCAACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCC
29206292 AGTCTAAG
129 AGTCTAAG
29206300 CATACGGAGT
Statistics
Matches: 251, Mismatches: 44, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
169 5 0.02
170 153 0.61
171 87 0.35
172 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (172 bp):
CAGCAGGATCGGCAGCACGCAGAGAGGGACCAGGATCGATCCTCGGCTTGCGCATTCTGCCTCTC
CGGCCAACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
TCTAAGACCTAGCAGAACCAAGGGTAGTGGCAGCAGGACCAG
Found at i:29206303 original size:26 final size:26
Alignment explanation
Indices: 29206273--29206325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29206263 GTTGACTTAG
29206273 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
29206299 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
29206325 G
1 G
29206326 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29213401 original size:25 final size:24
Alignment explanation
Indices: 29213364--29213410 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
29213354 TAGGCATACA
* *
29213364 AAGTTCATCCCTAGTCTATAGATAT
1 AAGTTAATCCCTAATCTA-AGATAT
*
29213389 AAGTTAATTCCTAATCTAAGAT
1 AAGTTAATCCCTAATCTAAGAT
29213411 CAGACGGATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (24 bp):
AAGTTAATCCCTAATCTAAGATAT
Found at i:29213891 original size:26 final size:26
Alignment explanation
Indices: 29213855--29213907 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29213845 GTTGGCTTAG
*
29213855 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATAAAGAGTTCATTCCTA-GTCTAA
29213881 GCATAAAGAGTTCATTCCTAGTCTAA
1 GCATAAAGAGTTCATTCCTAGTCTAA
29213907 G
1 G
29213908 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCTAGTCTAA
Found at i:29214739 original size:158 final size:156
Alignment explanation
Indices: 29214314--29214910 Score: 524
Period size: 157 Copynumber: 3.8 Consensus size: 156
29214304 ACAGGATCGA
* * *
29214314 CAGCATACAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
1 CAGCATGCAGAGGGGGA-CGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* * * * *
29214378 ACCCATACACCCGTTTCATGGGTTGGCTTAAGCATAGGTAGTTCATTCCATTTCTAAGCCCCAGC
65 ACCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATAGG-AGTTCATTCCATGTCTAAGCCCCAGC
*
29214443 CAGACCGAGGGTTATGGCAGCGGATTGG
129 CAGACCGAGGGTTATGGCAGCGGACTGG
* * * *
29214471 CAGCACGCA-AGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGATGAGC
1 CAGCATGCAGAGGGGGACGA-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* *
29214535 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
65 ACCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
29214600 TAGACCGAGGGTTGTGGTAGTGGGACTGG
129 CAGACCGAGGGTTATGGCAG-CGGACTGG
* * * * *
29214629 CAGCATGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAG-
1 CAGCATGCAGAGGGGGA-CGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* * * * * ** *
29214693 GCCCACACGGTCGTTTCGTGGGTTGACTTATGCATATAGAGTTCATTCCCA-GTCTAAG-ATCGG
65 ACCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATA-GGAGTTCATT-CCATGTCTAAGCCCCAG
* * * ** * *
29214756 ACCGGACTGAGGGTTGTGGCAGCATAATCGA
128 -CCAGACCGAGGGTTATGGCAGCGGACT-GG
* * * * * * *
29214787 CAACACGTAG-GGGAGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGCCAGCTGAG
1 CAGCATGCAGAGGG-GGA-CGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * * * ** * * *
29214851 CGCCCGCATGCTCATTTTATAGGTTGGCTTAGGCAT-GCAGAGTTCATTCTATGTCTAAGC
64 CACCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATAG--GAGTTCATTCCATGTCTAAGC
29214911 ATACGGAGTT
Statistics
Matches: 357, Mismatches: 68, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 133 0.37
158 133 0.37
159 88 0.25
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
CAGCATGCAGAGGGGGACGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
CCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCA
GACCGAGGGTTATGGCAGCGGACTGG
Found at i:29215920 original size:159 final size:158
Alignment explanation
Indices: 29215691--29216131 Score: 442
Period size: 159 Copynumber: 2.8 Consensus size: 158
29215681 TGTAGGATCG
* * * * * * * *
29215691 GCAGCACGCACGGGGGA-CCGAGTCGATCCCTGTCTTGTGCATTCTGCCTCTTCGGTCGACTGAG
1 GCAGCACGCAGGGGGGATCAG-GTCGATCCCAGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAG
* * * * * *
29215755 CCCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
65 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAA
* *
29215820 GC-AGATCGAGGGTT-CTGACAGCAGGACCT
130 GCGA-ACCGAGGGTTGC-GACAGCAGGACCA
* *
29215849 GCAGCACGCAGAGGGGGATCAGGTCGATCCTC-GGCTTGTGCATTATGCCTCTCCAGCCGGTTGA
1 GCAGCACGCAG-GGGGGATCAGGTCGATCC-CAGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGA
* * ***
29215913 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAAATCA
64 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCA
* * * *
29215977 AATCGAACCTAGGGTTGCGAGAGCAGGATCA
128 AAGCGAACCGAGGGTTGCGACAGCAGGACCA
* * * * ** * *
29216008 ACAGCACGTAGGGGGGATCGGGCCGATCCCAGGCTTACGTATTCTGCCTCTCCAGCCGGCTGAAC
1 GCAGCACGCAGGGGGGATCAGGTCGATCCCAGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGC
* * **
29216073 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAGTCATAAATAGTTCATTCCATGTCTAAGC
66 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
29216132 ATACGGAGTT
Statistics
Matches: 232, Mismatches: 43, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.02
158 101 0.44
159 119 0.51
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GCAGCACGCAGGGGGGATCAGGTCGATCCCAGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAAG
CGAACCGAGGGTTGCGACAGCAGGACCA
Found at i:29216705 original size:26 final size:26
Alignment explanation
Indices: 29216656--29216708 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29216646 GTTGGCTTAG
*
29216656 GCATACGGAGTTCTTTCAATGTCTAA
1 GCATACGGAGTTCTTCCAATGTCTAA
*
29216682 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTC-TTCCAATGTCTAA
29216708 G
1 G
29216709 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCTTCCAATGTCTAA
Found at i:29218300 original size:26 final size:26
Alignment explanation
Indices: 29218270--29218322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29218260 GTTGACTTAG
29218270 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
29218296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
29218322 G
1 G
29218323 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29219254 original size:159 final size:158
Alignment explanation
Indices: 29218843--29219282 Score: 453
Period size: 158 Copynumber: 2.8 Consensus size: 158
29218833 GCAGGATCGA
* * * * * * * *
29218843 CAGCACGTAAGGGGGATC-GGGTTGAGCCCCAACTTGCGTATTCTGCCTCTCCGATCGGTTGAGT
1 CAGCACGCAGGGGGGA-CAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * ** *
29218907 GCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCTAA
65 GCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAA
* *
29218971 CCGAGCCGAGGGTTGCGGCTACAGGATCGG
129 CCGAGCCGAGGGTTGCGGCTACAGGACCAG
* * * *
29219001 CAGCACGCTGGGGGGACAGGGTCGATCCCCGACTTGCGCATTTTGCGTCTCCGA-CTGGCTGTGC
1 CAGCACGCAGGGGGGACAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGC
* * *
29219065 GCCCGCA-AGC-CTGTTTCGTGGGTTCACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCCCGCACA-CTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* * * *
29219128 GCC-AGACTGAGGGTTGTGG-TAGCGGGACCAG
128 ACCGAG-CCGAGGGTTGCGGCTA-CAGGACCAG
** * *
29219159 CAGCACGCAGAGGGGGACTTGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGC
1 CAGCACGCAG-GGGGGACAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * * *
29219224 ACCCGTACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29219283 ATACGGAGTT
Statistics
Matches: 230, Mismatches: 41, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
157 10 0.04
158 124 0.54
159 93 0.40
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CAGCACGCAGGGGGGACAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
CCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
GAGCCGAGGGTTGCGGCTACAGGACCAG
Found at i:29219285 original size:26 final size:26
Alignment explanation
Indices: 29219255--29219307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29219245 GTTGGCTTAG
*
29219255 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
29219281 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
29219307 G
1 G
29219308 AGTTTGATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:29220347 original size:26 final size:26
Alignment explanation
Indices: 29220295--29220347 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29220285 GTTGGCTTAG
* *
29220295 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTATAA
29220321 GCATACGGAGTTCATTCCAAGTATAA
1 GCATACGGAGTTCATTCCAAGTATAA
29220347 G
1 G
29220348 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTATAA
Found at i:29221058 original size:26 final size:26
Alignment explanation
Indices: 29221029--29221078 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
29221019 GTTGACTTAG
29221029 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29221055 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
29221079 TAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29221356 original size:159 final size:159
Alignment explanation
Indices: 29221110--29221905 Score: 647
Period size: 159 Copynumber: 5.0 Consensus size: 159
29221100 TTACGATAGT
* * * * * * *
29221110 AAGATCGATAGCACGTA-AGGGGGACCGAGTCGATCCCCGGCTTGTGCATTTTGTCTCTCCGACC
1 AAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
* * * * *
29221174 GGCTGAGCGCCAGCACACCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAA
66 GGCTGAGCGCCCGCATACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
*
29221239 GCCCCAGCCGGACTGAGGGTTGTGGTAGT
131 GCCCCAGCCGGACTGAGGGTTGTGGTAGC
** * * *
29221268 GGGACCGACAGCACGCAGAGGGGGACCGGGTCGGTCCCCTGCTTGCGCATTATGCCTCTCCGATC
1 AAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
* * * * * **
29221333 AGCTCAGCGCCCACATACTCATTTCATGGGTTGACTTATGCATTTGGAGTTCATTCCCA-GTCTA
66 GGCTGAGCGCCCGCATACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTA
**** * * ** ** *
29221397 AG-ATTGGACCAGA-TCAAGGGTTACGACAGT
130 AGCCCCAG-CCGGACT-GAGGGTTGTGGTAGC
* * * * * * * * * * *
29221427 AGGATCGACAGTACGCGGGGGGGGCGAACGAGTCGATCCCCGGCTTGTGCATTCTACCTCTTCGA
1 AAGACCGACAGCACGC-AGAGGGG-GACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGA
* ** * * *
29221492 CCAGCTGAGCGCTTGCATGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATCTCT
64 CCGGCTGAGCGCCCGCATACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT
** *
29221557 AAGCCCCAGTAGGACTGAGGGTTGTGGCAGC
129 AAGCCCCAGCCGGACTGAGGGTTGTGGTAGC
* * *
29221588 GAGACTGGCAGCACGCAGAGGGGGACC-GGTCTGATCCCCGGCTTGCGCATTATGCCTC-CCTGA
1 AAGACCGACAGCACGCAGAGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCC-GA
* * * * * * ** **
29221651 CCGGCTCAACACCCGTATGCTCATTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCA-AAC
64 CCGGCTGAGCGCCCGCATACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTC
** * *
29221715 TAAG-ATCAGACCAGACCGAGGGTTGTGGTAGC
128 TAAGCCCCAG-CCGGACTGAGGGTTGTGGTAGC
* * * * * **
29221747 AAGATCGACAGCACGCAG-GAGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC
1 AAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
* * * * * *
29221811 GGTTGAGCGCCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTAA
66 GGCTGAGCGCCCGCATACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
* * *
29221876 GCCCTAACCGGACCGAGGGTTGTGGTAGC
131 GCCCCAGCCGGACTGAGGGTTGTGGTAGC
29221905 A
1 A
29221906 GGACTGGTAC
Statistics
Matches: 489, Mismatches: 132, Indels: 34
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 125 0.26
159 235 0.48
160 18 0.04
161 106 0.22
162 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
AAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
GGCTGAGCGCCCGCATACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
GCCCCAGCCGGACTGAGGGTTGTGGTAGC
Found at i:29221720 original size:320 final size:319
Alignment explanation
Indices: 29221055--29221900 Score: 959
Period size: 320 Copynumber: 2.7 Consensus size: 319
29221045 CCCAGTCTAA
* ** * * * * * * *
29221055 GCATACGGAGTTCATTCCCAGTCTTAGATCAGACTAGATCGAGGGTTACGATAGTAAGATCGATA
1 GCATGCGGAGTTCATTCCCAAACTAAGATCAGACCAGACCAAGGGTTACGACAGCAAGATCGACA
* * *
29221120 GCACGTAAGG-GGGAC--CGAGTCGATCCCCGGCTTGTGCATTTTGTCTCTCCGACCGGCTGAGC
66 GCACG-CAGGAGGGACAACGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
29221182 GCCAGCACACCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCCCCAGC
130 GCCTGCACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * *
29221247 CGGACTGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAGGGGGACCGGGTCGGTCCCCTGCTT
195 AGGACTGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTT
* * * *
29221312 GCGCATTATGCCTCTCCGATCAGCTCAGCGCCCACATACTCATTTCATGGGTTGACTTAT
260 GCGCATTATGCCTCTCCGACCAGCTCAACACCCACATACTCATTTCATGGGTTGACTTAG
** ** ** * * *
29221372 GCATTTGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTACGACAGTAGGATCGACA
1 GCATGCGGAGTTCATTCCCAAACTAAGATCAGACCAGACCAAGGGTTACGACAGCAAGATCGACA
* * * * * * *
29221437 GTACGCGGGGGGGGCGAACGAGTCGATCCCCGGCTTGTGCATTCTACCTCTTCGACCAGCTGAGC
66 GCACGCAGGAGGGAC-AACGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGC
* ** * *
29221502 GCTTGCATGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATCTCTAAGCCCCAGT
130 GCCTGCACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
29221567 AGGACTGAGGGTTGTGGCAGCGAGACTGGCAGCACGCAGAGGGGGACC-GGTCTGATCCCCGGCT
195 AGGACTGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGTC-GATCCCCGGCT
* ** *
29221631 TGCGCATTATGCCTC-CCTGACCGGCTCAACACCCGTATGCTCATTTCATGGGTTGACTTAG
259 TGCGCATTATGCCTCTCC-GACCAGCTCAACACCCACATACTCATTTCATGGGTTGACTTAG
* ** **
29221692 GCATGCGGAGTTCATTCCCAAACTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGACA
1 GCATGCGGAGTTCATTCCCAAACTAAGATCAGACCAGACCAAGGGTTACGACAGCAAGATCGACA
* * * ** *
29221757 GCACGCAGGAGGGACCA-G-GTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCG
66 GCACGCAGGAGGGACAACGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * * * *
29221820 CCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTAAGCCCTAACC
131 CCTGCACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCA
*
29221885 GGACCGAGGGTTGTGG
196 GGACTGAGGGTTGTGG
29221901 TAGCAGGACT
Statistics
Matches: 440, Mismatches: 83, Indels: 12
0.82 0.16 0.02
Matches are distributed among these distances:
316 2 0.00
317 168 0.38
318 1 0.00
319 7 0.02
320 262 0.60
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (319 bp):
GCATGCGGAGTTCATTCCCAAACTAAGATCAGACCAGACCAAGGGTTACGACAGCAAGATCGACA
GCACGCAGGAGGGACAACGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCG
CCTGCACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCA
GGACTGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTG
CGCATTATGCCTCTCCGACCAGCTCAACACCCACATACTCATTTCATGGGTTGACTTAG
Found at i:29227843 original size:26 final size:26
Alignment explanation
Indices: 29227805--29227858 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
29227795 TGGGTTGACT
29227805 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
29227831 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
29227857 TA
1 TA
29227859 AGATCAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:29228142 original size:159 final size:160
Alignment explanation
Indices: 29227928--29228338 Score: 501
Period size: 159 Copynumber: 2.6 Consensus size: 160
29227918 TCAATCCTCG
* * *
29227928 GCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * *
29227993 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTATGGTAG-CGAGA-CTG-
66 CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTATCGTAGAAG-GATC-GA
* * *
29228054 GCAGCACGTAGAGGGGGATCGGGCTGATCCCTA
129 G-AGCACGCAGAGGGGGATCGGACTGATCCCCA
* * * * * *
29228087 GCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * *** ** *
29228152 CATACGAAGTTTATTCCCA-GTCTAAG-ATTGGACCAGTTCAAGGGTTGTCGTAGAAGGATCGAG
66 CATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTATCGTAGAAGGATCGAG
29228215 AGCACGCAGAGGGGGATCGGACTGATCCCCA
130 AGCACGCAGAGGGGGATCGGACTGATCCCCA
* *
29228246 GCTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
29228311 CATACGGAGTTCATTCCATGTCTAAGCA
66 CATACGGAGTTCATTCCATGTCTAAGCA
29228339 TACGGAGTTC
Statistics
Matches: 210, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
158 4 0.02
159 199 0.95
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (160 bp):
GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTATCGTAGAAGGATCGAGA
GCACGCAGAGGGGGATCGGACTGATCCCCA
Found at i:29228340 original size:26 final size:26
Alignment explanation
Indices: 29228310--29228362 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29228300 GTTGGCTTAG
*
29228310 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
29228336 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
29228362 G
1 G
29228363 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:29228701 original size:26 final size:26
Alignment explanation
Indices: 29228671--29228722 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29228661 TTGACTTAGG
29228671 CATACGAAGTTCATCCCCAATCTAAA
1 CATACGAAGTTCATCCCCAATCTAAA
* *
29228697 CATACGAAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTCATCCCCAATCTAAA
29228723 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.29, G:0.10, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAA
Found at i:29229015 original size:160 final size:158
Alignment explanation
Indices: 29228739--29229039 Score: 388
Period size: 160 Copynumber: 1.9 Consensus size: 158
29228729 TCGGATCGAA
* * * *
29228739 GGTTGCGGCAGCAGGATCAGCAGCATGCAGGGGGGATTGGGCCGATCCCTGACTTGCGCATTCTG
1 GGTTGCGGCAGCAGGATCAGCAGCATGCAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTATG
* * *
29228804 CCTCTCCGACCGGCTGAGCGCCCGCTCGCCCGTTTCATGGGCTGGCTTAGGCATAGGGAGTTCAT
66 CCTCTCCGACCGGCTGAGCGCCCGCTCGCCCATTTCATAGGCTGGCTTAGGCATACGGAGTTCAT
*
29228869 TCCGTGTCTAAGCCCCAGCTGAACTGGG
131 TCCATGTCTAAGCCCCAGCTGAACTGGG
* * * * * * *
29228897 GGTTGTGGCAGCGGGATCGGTAGCACTGCAGAAGGGGATCGGGCTGATCCCCGTCTTGTGCATTA
1 GGTTGCGGCAGCAGGATCAGCAGCA-TGCAG-AGGGGATCGGGCCGATCCCCGACTTGCGCATTA
* * * * *
29228962 TGCCTCTCCGATCGGCTGAGCGCTCGCAT-GCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTT
64 TGCCTCTCCGACCGGCTGAGCGCCCGC-TCGCCCATTTCATAGGCTGGCTTAGGCATACGGAGTT
29229026 CATTCCATGTCTAA
128 CATTCCATGTCTAA
29229040 TCATACGGAG
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
158 21 0.17
159 5 0.04
160 93 0.77
161 1 0.01
ACGTcount: A:0.16, C:0.27, G:0.33, T:0.24
Consensus pattern (158 bp):
GGTTGCGGCAGCAGGATCAGCAGCATGCAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTATG
CCTCTCCGACCGGCTGAGCGCCCGCTCGCCCATTTCATAGGCTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAGCTGAACTGGG
Found at i:29229969 original size:158 final size:159
Alignment explanation
Indices: 29229789--29230081 Score: 401
Period size: 159 Copynumber: 1.8 Consensus size: 159
29229779 ACTGGACCAT
* * *
29229789 GGGTTGCGGCAGCAGGATCGACAGCACGCA-TGGGGGACCGAGCCGATCCCCGGCTTGCGCATTC
1 GGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTA
* ** * **
29229853 TACCTCTCCGGCCGACTGAGCGCCCGCACT-CCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 TACCTCTCCGGCCGACTCAGCGCCCGCA-TGCCCATTTCATGGGTTGACTTAGGCATACAGAGTT
29229917 CATTCCATGTCTAAGCCCTAGCCAGACCGA
130 CATTCCATGTCTAAGCCCTAGCCAGACCGA
* *
29229947 GGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTA
1 GGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTA
* * * * * * *
29230012 TGCCTCTTCGGTCGGCTCAGCGCCTGTATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
66 TACCTCTCCGGCCGACTCAGCGCCCGCATGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTC
29230077 ATTCC
131 ATTCC
29230082 TAGTCGAAGC
Statistics
Matches: 115, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 28 0.24
159 87 0.76
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (159 bp):
GGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTA
TACCTCTCCGGCCGACTCAGCGCCCGCATGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCCCTAGCCAGACCGA
Found at i:29230805 original size:26 final size:26
Alignment explanation
Indices: 29230775--29230827 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29230765 TTTGACTTAG
29230775 GCATACAGAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
** * *
29230801 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
29230827 G
1 G
29230828 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:29231101 original size:158 final size:157
Alignment explanation
Indices: 29230868--29231169 Score: 382
Period size: 158 Copynumber: 1.9 Consensus size: 157
29230858 GATCGGCAGC
* * *
29230868 ACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCACG
1 ACGTAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCACG
* * * **
29230933 CATGTCCGTTTCGTGGTTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAAGC-CCTAG-TCGG
66 CACGTCCGTTTCATGGGTTGGCTTACGCATACAGAGTTCATTCCATGTCTAAGCTCC-AGCT-GG
*
29230996 ACTGAGGGTTGTGGCAACCAGATGGTAGT
129 ACCGAGGGTTGTGGCAACCAGATGGTAGT
* *
29231025 ACGTAGAGGGGG-TCCGAGCCGATCC-CGGGCTT-CGACATTCTGCCTCTCCGGCCGACTGAGCG
1 ACGTAG-GGGGGAT-CGAGCCGATCCTC-GGCTTGCG-CATTCTACCTCTCCGACCGACTGAGCG
* *
29231087 CCCGCACG-CTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCTCCAGC
62 CACGCACGTC-CGTTTCATGGGTTGGCTTACGCATACAGAGTTCATTCCATGTCTAAGCTCCAGC
29231151 TGGACCGAGGGTTGTGGCA
126 TGGACCGAGGGTTGTGGCA
29231170 GCTGGACCGG
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
157 11 0.09
158 111 0.89
159 3 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (157 bp):
ACGTAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCACG
CACGTCCGTTTCATGGGTTGGCTTACGCATACAGAGTTCATTCCATGTCTAAGCTCCAGCTGGAC
CGAGGGTTGTGGCAACCAGATGGTAGT
Found at i:29231853 original size:26 final size:26
Alignment explanation
Indices: 29231803--29231855 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29231793 GTTGGCTTGG
*
29231803 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
29231829 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
29231855 G
1 G
29231856 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:29232120 original size:26 final size:26
Alignment explanation
Indices: 29232091--29232143 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29232081 GTTGGCTTAT
29232091 GCATATGA-AGTTCATT-CCATGTCTAA
1 GCATA-GAGAGTTCATTCCCA-GTCTAA
29232117 GCATAGAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
29232143 G
1 G
29232144 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:29233898 original size:12 final size:12
Alignment explanation
Indices: 29233881--29233922 Score: 84
Period size: 12 Copynumber: 3.5 Consensus size: 12
29233871 CGAAGGTTGT
29233881 GGCAGCGGGATC
1 GGCAGCGGGATC
29233893 GGCAGCGGGATC
1 GGCAGCGGGATC
29233905 GGCAGCGGGATC
1 GGCAGCGGGATC
29233917 GGCAGC
1 GGCAGC
29233923 ACGTAGAGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.17, C:0.26, G:0.50, T:0.07
Consensus pattern (12 bp):
GGCAGCGGGATC
Found at i:29234667 original size:26 final size:26
Alignment explanation
Indices: 29234637--29234689 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29234627 GTTGACTTAG
*
29234637 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
29234663 GCATACAAAGTTTATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
29234689 G
1 G
29234690 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:29235167 original size:26 final size:26
Alignment explanation
Indices: 29235137--29235189 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29235127 GTTGGCTTAG
*
29235137 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29235163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29235189 G
1 G
29235190 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29235715 original size:354 final size:355
Alignment explanation
Indices: 29235086--29235728 Score: 866
Period size: 354 Copynumber: 1.8 Consensus size: 355
29235076 TGCATATTCT
*** * * * *
29235086 GCCTCTCTGACCAGCTGAGTGCCCGTACGCTCGTTTCATAGGTTGGCTTAGGCATATGGAGTTCA
1 GCCTCTCTGACCAGCTGAGCAACCGCACGATCGTTTCATAGGTTGACTTAGGCATACGGAGTTCA
* * * * *
29235151 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCT
66 TCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACAGAGGGTTACGACA
* * * * *
29235216 GTAGGATTGACTGCATGCAGGAGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGAC
131 GCAGGATCGACTGCACGCAGGAGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGAC
* * *
29235281 CGGCTGAATGCCCGCTCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
196 CGGCTGAACGCCCGCACGCTTGTTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTA
* **
29235346 AGCCCCAGTCGGACCGATTGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACGTAGAGAGA
261 AGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACGTAGAGAGA
29235411 GATCGAGCTGATCCCCGACTTACGAATTAA
326 GATCGAGCTGATCCCCGACTTACGAATTAA
* *
29235441 GCCTCTCTGACCGGCTGAGCAACCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGACCAGCTGAGCAACCGCACGATCGTTTCATAGGTTGACTTAGGCATACGGAGTTCA
* *
29235506 TCCCCA-GTCTAAGCATATGGAGTTCATTCCTA-TCTAAGATCAAACCGGATC-GAGGGTTACGA
66 T-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGA-CAGAGGGTTACGA
* * * * *
29235568 CAGCAGGATCG-GTAGCACGCAGGGGGGA-CTGGGTCGATCCCCGATTTACGTATTCTGCCTCTC
129 CAGCAGGATCGACT-GCACGCAGGAGGGATC-GGGCCGATCCCCGACTTACGCATTCTGCCTCTC
** * * *
29235631 CGGTCGGCTGAGCGCCCGCACG-TCTGTTTCGTGGGTTGGCCTAGGCATAGGGAGTTCATTGCAT
192 CGACCGGCTGAACGCCCGCACGCT-TGTTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCAT
29235695 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
256 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
29235729 TGGGACCGGC
Statistics
Matches: 246, Mismatches: 37, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
353 3 0.01
354 158 0.64
355 82 0.33
356 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (355 bp):
GCCTCTCTGACCAGCTGAGCAACCGCACGATCGTTTCATAGGTTGACTTAGGCATACGGAGTTCA
TCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACAGAGGGTTACGACA
GCAGGATCGACTGCACGCAGGAGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGAC
CGGCTGAACGCCCGCACGCTTGTTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTA
AGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACGTAGAGAGA
GATCGAGCTGATCCCCGACTTACGAATTAA
Found at i:29235996 original size:158 final size:158
Alignment explanation
Indices: 29235518--29236017 Score: 549
Period size: 158 Copynumber: 3.2 Consensus size: 158
29235508 CCCAGTCTAA
* * * * * *
29235518 GCATATGGAGTTCATTCC-TATCTAAGATCAAACCGGATCGAGGGTTACGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * ** * * *
29235582 GCACGCAGGGGGGACTGGGTCGATCCCCGATTTACGTATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
*
29235647 CGCACG-TCTGTTTCGTGGGTTGGCCTAG
131 CGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * ** * *
29235675 GCATAGGGAGTTCATTGCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGT
* * * * * * * * *
29235739 AGCATGTAGAGGTGGATCGAGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCG
65 AGCATGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* *
29235804 CCCGCACGCTCGTTTCGTGGGTTGACTTAT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
29235834 GCATACGAAGTTCATTCCCA-GTCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCAGGATTGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGT
* ** *
29235898 AGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCGC
65 AGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
29235963 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
29235992 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
29236018 CCATGCGAAG
Statistics
Matches: 273, Mismatches: 63, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
157 19 0.07
158 131 0.48
159 119 0.44
160 4 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
GCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29236136 original size:11 final size:11
Alignment explanation
Indices: 29236117--29236152 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
29236107 CGGGGCACCT
29236117 TCGTCGGAGCA
1 TCGTCGGAGCA
* *
29236128 TCGTTGGAGCT
1 TCGTCGGAGCA
29236139 TCGTCGGAGCA
1 TCGTCGGAGCA
29236150 TCG
1 TCG
29236153 CTGGAGAGCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (11 bp):
TCGTCGGAGCA
Found at i:29236143 original size:22 final size:22
Alignment explanation
Indices: 29236115--29236158 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
29236105 CCCGGGGCAC
*
29236115 CTTCGTCGGAGCATCGTTGGAG
1 CTTCGTCGGAGCATCGCTGGAG
29236137 CTTCGTCGGAGCATCGCTGGAG
1 CTTCGTCGGAGCATCGCTGGAG
29236159 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (22 bp):
CTTCGTCGGAGCATCGCTGGAG
Found at i:29236774 original size:26 final size:26
Alignment explanation
Indices: 29236738--29236790 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29236728 GTTGAATTAG
* *
29236738 GCATACGGAGTTCATCCCCAATCTAA
1 GCATAAGGAGTTCATCCCCAAGCTAA
29236764 GCATAAGGAGTTCATCCCCAAGCTAA
1 GCATAAGGAGTTCATCCCCAAGCTAA
29236790 G
1 G
29236791 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAAGCTAA
Found at i:29236999 original size:87 final size:88
Alignment explanation
Indices: 29236839--29237017 Score: 200
Period size: 87 Copynumber: 2.0 Consensus size: 88
29236829 GCACGCAGGG
* * * * ***
29236839 GGGATCGAGCCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGTACGCTTG
1 GGGATCGAGCCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGACCGAGCACCCGCACGCCCA
*
29236904 TTTCGTGGGTTGGCGTAGGAATA
66 TTTCGTGGGTTGACGTAGGAATA
*** *
29236927 GGGATCG-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCC-GTCCGACCGAGCACCCGCACGCCC
1 GGGATCGAGCCGATCCCCAACTTACGCATTCTGCCTCTCCGGT-CGACCGAGCACCCGCACGCCC
* * *
29236990 ATTTTGTGGGTTGACTTAGGCATA
65 ATTTCGTGGGTTGACGTAGGAATA
29237014 GGGA
1 GGGA
29237018 GTTCATTCCA
Statistics
Matches: 75, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
86 2 0.03
87 66 0.88
88 7 0.09
ACGTcount: A:0.15, C:0.31, G:0.30, T:0.25
Consensus pattern (88 bp):
GGGATCGAGCCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGACCGAGCACCCGCACGCCCA
TTTCGTGGGTTGACGTAGGAATA
Found at i:29237111 original size:21 final size:21
Alignment explanation
Indices: 29237072--29237112 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
29237062 GCGGGATCGG
* *
29237072 TAGCACGCAGAGGGGGACCGA
1 TAGCACGCAGAGAGAGACCGA
29237093 TAGCACGCAGAGAGAGACCG
1 TAGCACGCAGAGAGAGACCG
29237113 GGCTGATCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.39, T:0.05
Consensus pattern (21 bp):
TAGCACGCAGAGAGAGACCGA
Found at i:29237385 original size:26 final size:26
Alignment explanation
Indices: 29237348--29237399 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29237338 GTTAGCTTAG
*
29237348 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
29237374 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29237400 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.