Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 312 of 402
Found at i:29238119 original size:26 final size:26
Alignment explanation
Indices: 29238069--29238121 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29238059 GTTGACTTAG
* *
29238069 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
29238095 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
29238121 G
1 G
29238122 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:29238413 original size:158 final size:156
Alignment explanation
Indices: 29238150--29238595 Score: 452
Period size: 158 Copynumber: 2.8 Consensus size: 156
29238140 TCACGACAAT
* * * * * * * * * *
29238150 AGGATCGATAGCACGCAGGGGGGACTAGGCCGATCCTCGA-CTTGCGTA-TCTGCCTCTACGATC
1 AGGACCGACAGCACACAAGGGGGACCAGGCCCATCC-CGAGCTTGCGCATTATGCCTCTCCGGTC
* * * * *
29238213 GGCTGAGTGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 AGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
29238278 GCGCCAGTCAGACCGAGGGTTGTGGTAGC
130 GCG-CA-CCAGACCAAGGGTTGCGGTAGC
** *
29238307 AGGACCGACAGCATGCAGAGGGGG-CCCGGCCCATCCCCGA-CTTGCGCATTATGCCTCTCCGGT
1 AGGACCGACAGCACACA-AGGGGGACCAGGCCCAT-CCCGAGCTTGCGCATTATGCCTCTCCGGT
* * * *
29238370 CAGCTTAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCTCA-GTCT
64 CAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCT
* *
29238434 AAGATTGGACCAGACCAAGGGTTGCGGTAGC
128 AAG--CGCACCAGACCAAGGGTTGCGGTAGC
* * * * * *
29238465 AGGATCGACAGCACACAAGGGGGACCAGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGTCG
1 AGGACCGACAGCACACAAGGGGGACCAGGCCCATCCCGAGCTTGCGCATTATGCCTCTCCGGTCA
** * *
29238530 GCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTATAAG
66 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
29238595 C
131 C
29238596 ATACGGAGTT
Statistics
Matches: 237, Mismatches: 43, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
157 43 0.18
158 190 0.80
159 3 0.01
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
AGGACCGACAGCACACAAGGGGGACCAGGCCCATCCCGAGCTTGCGCATTATGCCTCTCCGGTCA
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CGCACCAGACCAAGGGTTGCGGTAGC
Found at i:29239605 original size:159 final size:152
Alignment explanation
Indices: 29239390--29239679 Score: 382
Period size: 159 Copynumber: 1.9 Consensus size: 152
29239380 CAACACGTAG
* * * *
29239390 GGAGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAATCGACTGAACGCCCGCACGCT
1 GGAGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAATCGACTGAACGCCCGCACGCC
* * * *
29239455 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGGCCGAGGG
66 CATTTC----G-TGG--TAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAACCGAGCCGAGCG
29239520 TTGTGGCAATGGGACCGGTAGCATGCAGA
124 TTGTGGCAATGGGACCGGTAGCATGCAGA
* * * **
29239549 GGAGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTAGTCGGTTGAACGCCCGCACGCC
1 GGAGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAATCGACTGAACGCCCGCACGCC
* *
29239614 CGTTTCGTGGTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCGAGCCGAGCGTTGTGGC
66 CATTTCGTGGTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAACCGAGCCGAGCGTTGTGGC
29239679 A
131 A
29239680 GCGGGATCGA
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
152 51 0.44
154 3 0.03
155 1 0.01
159 61 0.53
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (152 bp):
GGAGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAATCGACTGAACGCCCGCACGCC
CATTTCGTGGTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAACCGAGCCGAGCGTTGTGGC
AATGGGACCGGTAGCATGCAGA
Found at i:29239726 original size:152 final size:155
Alignment explanation
Indices: 29239402--29239726 Score: 372
Period size: 152 Copynumber: 2.1 Consensus size: 155
29239392 AGGATCGAGT
* *
29239402 CGATCCCCGGCTTGTGCATTCTGCCTCTCCAATCGACTGAACGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGACTGAACGCCCGCACGCCCATTTC---GGT
* * * * *
29239467 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGGCCGAGGGTTGTGGCAATGG
63 TGGC-TAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAACCGAGCCGAGCGTTGTGGCAACGG
* *
29239532 GACCGGTAGCATGCAGAGGAGGATCGGGC
127 GACCGGTAGCACGCAGAGGAGGACCGGGC
* * * ** *
29239561 CGATCCCCAGCTTGCGCATTCTGCCTCTCTAGTCGGTTGAACGCCCGCACGCCCGTTTC-G-TGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGACTGAACGCCCGCACGCCCATTTCGGTTGG
* * *
29239624 -TAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCGAGCCGAGCGTTGTGGCAGCGGGATC
66 CTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAACCGAGCCGAGCGTTGTGGCAACGGGACC
*
29239688 GAG-AGCACGGA-ATGGAGGACCGGGC
131 G-GTAGCACGCAGA-GGAGGACCGGGC
* *
29239713 TGATCCCTGGCTTG
1 CGATCCCCGGCTTG
29239727 TACATTATAC
Statistics
Matches: 142, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
151 1 0.01
152 85 0.60
153 1 0.01
154 3 0.02
155 1 0.01
159 51 0.36
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (155 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGACTGAACGCCCGCACGCCCATTTCGGTTGG
CTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAACCGAGCCGAGCGTTGTGGCAACGGGACC
GGTAGCACGCAGAGGAGGACCGGGC
Found at i:29240607 original size:26 final size:26
Alignment explanation
Indices: 29240571--29240623 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29240561 GTTGACTTAG
29240571 GCATACAGAGTTCAC-CTCCAGTCTAA
1 GCATACAGAGTTCACTC-CCAGTCTAA
* *
29240597 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
29240623 G
1 G
29240624 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:29240987 original size:26 final size:26
Alignment explanation
Indices: 29240951--29241003 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29240941 GTTGACTTAG
29240951 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
29240977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29241003 G
1 G
29241004 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29242354 original size:26 final size:26
Alignment explanation
Indices: 29242318--29242368 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
29242308 GTTGACTTAG
29242318 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29242344 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
29242369 CGACTGAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29243910 original size:26 final size:26
Alignment explanation
Indices: 29243875--29243927 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29243865 GTTGGCTTAG
*
29243875 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTAATTCCTA-GTCTAA
*
29243901 GCATATGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCTAGTCTAA
29243927 G
1 G
29243928 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCTAGTCTAA
Found at i:29245000 original size:26 final size:26
Alignment explanation
Indices: 29244964--29245016 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29244954 ATTGACTTAG
29244964 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
29244990 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29245016 G
1 G
29245017 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29245279 original size:159 final size:159
Alignment explanation
Indices: 29245073--29245368 Score: 457
Period size: 159 Copynumber: 1.9 Consensus size: 159
29245063 GGGGGATCGG
* * *
29245073 GCCGATCCTCGGCTTGCGCATTCTACCTTTCTGATCGGCTGAGCGCCCACACGCCCGTTTCGTGG
1 GCCGATCCTCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACGCCCGTTTCGTGG
* * * *
29245138 CTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGTGTTGTGGCAGC
66 CTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGC
*
29245203 GGGACCGACAGCATGCAGAGGGCCACCAA
131 AGGACCGACAGCATGCAGAGGGCCACCAA
* * *
29245232 GCCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
1 GCCGATCCTCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACGCCCGTTTCGTGG
* * * *
29245297 GTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGTCGGACGGAGGGTTATGGCAGC
66 CTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGC
29245362 AGGACCG
131 AGGACCG
29245369 GTAGCGAGAT
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
159 122 1.00
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.22
Consensus pattern (159 bp):
GCCGATCCTCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACGCCCGTTTCGTGG
CTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGC
AGGACCGACAGCATGCAGAGGGCCACCAA
Found at i:29246522 original size:26 final size:26
Alignment explanation
Indices: 29246486--29246538 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29246476 GTTGGCTTAG
29246486 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29246512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29246538 G
1 G
29246539 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29247254 original size:26 final size:26
Alignment explanation
Indices: 29247218--29247267 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29247208 GTTGACTTAG
29247218 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
29247244 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
29247268 CAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29247812 original size:12 final size:12
Alignment explanation
Indices: 29247795--29247824 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
29247785 GAGGGTTGCG
29247795 GTAGCAGGACCA
1 GTAGCAGGACCA
*
29247807 GTAGCAGGATCA
1 GTAGCAGGACCA
29247819 GTAGCA
1 GTAGCA
29247825 CACAGGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.20, G:0.33, T:0.13
Consensus pattern (12 bp):
GTAGCAGGACCA
Found at i:29248138 original size:26 final size:26
Alignment explanation
Indices: 29248099--29248151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29248089 GTTGACTTAG
29248099 GCATACAGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
* *
29248125 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29248151 G
1 G
29248152 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29248479 original size:159 final size:158
Alignment explanation
Indices: 29248125--29248479 Score: 347
Period size: 159 Copynumber: 2.2 Consensus size: 158
29248115 CCAAGTCTAA
** * * * *
29248125 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCAGGATCGACA
1 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGATTACAACAGCAGGACCGACA
* * * * * * *
29248190 GCACGCATGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCGCC
66 GCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGCTAGCTCAACGCC
* * * *
29248255 CGCACGGTAGTTTCGTGGGTTGGCTTAG
131 CGAACGCTAGTTTCATGGGTTGACTTAG
* * ** *** *
29248283 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGATTATGGCAGCAGGACCGG
1 GCATACGGAGCTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGATTACAACAGCAGGACCGA
* ** * *
29248346 CAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATTTCTCTTC-GATCAGCTCAA
64 CAGCACGCA-AGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGCT-AGCTCAA
* *
29248410 CGCCCGAATGCTTGTTTCATGGGTTGACTTAG
127 CGCCCGAACGCTAGTTTCATGGGTTGACTTAG
* *
29248442 GCATACGTAGCTCATTCCCAGTCTAAGATCGGACCAGA
1 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAGA
29248480 TGGAAGGTTA
Statistics
Matches: 155, Mismatches: 36, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 56 0.36
159 93 0.60
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGATTACAACAGCAGGACCGACA
GCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGCTAGCTCAACGCC
CGAACGCTAGTTTCATGGGTTGACTTAG
Found at i:29248639 original size:26 final size:26
Alignment explanation
Indices: 29248603--29248653 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29248593 TGGCTTGGGT
29248603 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
29248629 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
29248654 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:29249144 original size:26 final size:26
Alignment explanation
Indices: 29249114--29249166 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29249104 GTTGGCTTAG
29249114 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
29249140 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
29249166 G
1 G
29249167 AGTTTTAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:29249775 original size:160 final size:161
Alignment explanation
Indices: 29249500--29249824 Score: 469
Period size: 160 Copynumber: 2.0 Consensus size: 161
29249490 AAAATCTTCT
* ** * *
29249500 CCACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATAAAAGTATCACCTCTACC
1 CCACTTCGAGTTTTTAGCTAAATTTTTTCATGCATCCCAACAAAAATAAAAGGATCACCTCTACC
29249565 AAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAACA-TTTCAA
66 AAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAA
* *
29249629 AAATCTTGAAAAATAGAAAACGGGTCCTCTTG
130 AAATCGTGAAAAATAGAAAACGGGTCATCTTG
* *
29249661 CCACTTCGAGTTTTTAGCTGAA-TTTTTCATGCATCCCCAA-AAAAATACAAGGATCACCTCTAC
1 CCACTTCGAGTTTTTAGCTAAATTTTTTCATGCAT-CCCAACAAAAATAAAAGGATCACCTCTAC
** * *
29249724 CAAATTTTGGGG-CAAAACTCTTTCTTGAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTA
65 CAAA-TTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
29249788 AAAATCGTGAAAAATAGAAAATGGGTCATCTTG
129 AAAATCGTGAAAAATAGAAAACGGGTCATCTTG
29249821 CCAC
1 CCAC
29249825 GAAACTTCAC
Statistics
Matches: 147, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
159 1 0.01
160 115 0.78
161 31 0.21
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.30
Consensus pattern (161 bp):
CCACTTCGAGTTTTTAGCTAAATTTTTTCATGCATCCCAACAAAAATAAAAGGATCACCTCTACC
AAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGGGTCATCTTG
Found at i:29250424 original size:16 final size:16
Alignment explanation
Indices: 29250403--29250436 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
29250393 GGGTTACGGC
29250403 AGCAGGATCGACAGTA
1 AGCAGGATCGACAGTA
29250419 AGCAGGATCGACAGTA
1 AGCAGGATCGACAGTA
29250435 AG
1 AG
29250437 TAGGGGGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.18, G:0.32, T:0.12
Consensus pattern (16 bp):
AGCAGGATCGACAGTA
Found at i:29250692 original size:170 final size:173
Alignment explanation
Indices: 29250287--29250710 Score: 480
Period size: 174 Copynumber: 2.5 Consensus size: 173
29250277 CCGATCCCTT
* * * * * * *
29250287 GCTTACGCATTATGCCTCTCTGATCGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGG
1 GCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTAGG
* * * *
29250352 CATACAGAGTTCATTCCTAGTCTAAGATCGAACCGAACCGAGGGTTACGGCAGCAGGATCGACAG
66 CATACAGAGTTCATTCCCAATCTAAGATCCAACCGAACCGAGGGTTACAGCAGCAGGATC-ACAG
* *
29250417 TAAGCAGGATCGACAGTAAGTAGGGGGGATCAGGCTGGTCCCCG
130 TAAGCAGGATCGACAGCAAGTAGGGGGGATCAGGCTGATCCCCG
* * * * *
29250461 GCTTACGCATTTTGCCTCTCCGATCGACTGAGCGCCCGCACCCTCGTTTTATGGGTTGGCTTAGG
1 GCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTAGG
* *
29250526 CATATC-GAGTTCATTCCCAATCTAAGATCCAACC-AGACCGAGGGTTGCAGTAGCAGGA-C-CA
66 CATA-CAGAGTTCATTCCCAATCTAAGATCCAACCGA-ACCGAGGGTTACAGCAGCAGGATCACA
* * * * *
29250587 GT-AGCAGGATTGGCAGCATGTAGGGGGGATCGGGCTGATCGCCG
129 GTAAGCAGGATCGACAGCAAGTAGGGGGGATCAGGCTGATCCCCG
* * ** * * * *
29250631 GCTTGCGCATTCTGCCTCTCCGATTGGTTGAGTGTCCGTAAGCTCATTTTGTAGGTTGGCTTAGG
1 GCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTAGG
*
29250696 CATACGGAGTTCATT
66 CATACAGAGTTCATT
29250711 ATATGTCAAA
Statistics
Matches: 210, Mismatches: 37, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
169 1 0.00
170 100 0.48
171 4 0.02
173 2 0.01
174 102 0.49
175 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (173 bp):
GCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTAGG
CATACAGAGTTCATTCCCAATCTAAGATCCAACCGAACCGAGGGTTACAGCAGCAGGATCACAGT
AAGCAGGATCGACAGCAAGTAGGGGGGATCAGGCTGATCCCCG
Found at i:29250753 original size:170 final size:171
Alignment explanation
Indices: 29250287--29250755 Score: 396
Period size: 170 Copynumber: 2.7 Consensus size: 171
29250277 CCGATCCCTT
* * * * * * ** * *
29250287 GCTTACGCATTATGCCTCTCTGATCGGCTCAGCACCCG-TACGCTCATTTCGTGGGTTGACTTAG
1 GCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCAAC-CTCATTTTATAGGTTGGCTTAG
* * * * *
29250351 GCATA-CAGAGTTCATTC-CTAGTCTAAGATCGAACC-GAACCGAGGGTTACGGCAGCAGGATCG
65 GCATATC-GAGTTCATTCAC-AATCAAAGACCCAACCAG-ACCGAGGGTTGCGGCAGCAGGA-C-
* *
29250413 ACAGTAAGCAGGATCGACAGTAAGTAGGGGGGATCAGGCTGGTCCCCG
125 -CAGTAAGCAGGATCGACAGCAAGTAGGGGGGATCAGGCTGATCCCCG
* * * *
29250461 GCTTACGCATTTTGCCTCTCCGATCGACTGAGCGCCCGCACCCTCGTTTTATGGGTTGGCTTAGG
1 GCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCAACCTCATTTTATAGGTTGGCTTAGG
* * * * *
29250526 CATATCGAGTTCATTCCCAATCTAAGATCCAACCAGACCGAGGGTTGCAGTAGCAGGACCAGT-A
66 CATATCGAGTTCATTCACAATCAAAGACCCAACCAGACCGAGGGTTGCGGCAGCAGGACCAGTAA
* * * * *
29250590 GCAGGATTGGCAGCATGTAGGGGGGATCGGGCTGATCGCCG
131 GCAGGATCGACAGCAAGTAGGGGGGATCAGGCTGATCCCCG
* * ** * * * * *
29250631 GCTTGCGCATTCTGCCTCTCCGATTGGTTGAGTGTCCGTAAGCTCATTTTGTAGGTTGGCTTAGG
1 GCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCAACCTCATTTTATAGGTTGGCTTAGG
* * * *
29250696 CATA-CGGAGTTCATT-ATATGTCAAAG-CCCAAGTCAGACCGAGGGTTGTGGCAGCAGGACC
66 CATATC-GAGTTCATTCACA-ATCAAAGACCCAA-CCAGACCGAGGGTTGCGGCAGCAGGACC
29250756 GATAGTGGAA
Statistics
Matches: 243, Mismatches: 45, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
169 6 0.02
170 129 0.53
171 4 0.02
173 1 0.00
174 99 0.41
175 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (171 bp):
GCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCAACCTCATTTTATAGGTTGGCTTAGG
CATATCGAGTTCATTCACAATCAAAGACCCAACCAGACCGAGGGTTGCGGCAGCAGGACCAGTAA
GCAGGATCGACAGCAAGTAGGGGGGATCAGGCTGATCCCCG
Found at i:29250915 original size:26 final size:26
Alignment explanation
Indices: 29250879--29250931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29250869 GTTGACTTAG
*
29250879 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
29250905 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29250931 G
1 G
29250932 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29251418 original size:26 final size:26
Alignment explanation
Indices: 29251368--29251420 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29251358 GATGGCTTAG
*
29251368 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
29251394 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
29251420 G
1 G
29251421 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:29251905 original size:26 final size:25
Alignment explanation
Indices: 29251869--29251989 Score: 96
Period size: 26 Copynumber: 5.0 Consensus size: 25
29251859 GTTGGCTTAG
29251869 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
29251895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
* * * *
29251921 G-AT-CGGA---C--T-GAATCGAG
1 GCATACGGAGTTCATTCCAGTCTAA
* *
29251938 GCATACGAAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
29251964 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
29251989 G
1 G
29251990 ATTTTGAGCC
Statistics
Matches: 73, Mismatches: 12, Indels: 21
0.69 0.11 0.20
Matches are distributed among these distances:
17 5 0.07
18 2 0.03
19 4 0.05
21 1 0.01
22 1 0.01
24 5 0.07
25 9 0.12
26 43 0.59
27 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:29256635 original size:71 final size:71
Alignment explanation
Indices: 29256519--29256662 Score: 279
Period size: 71 Copynumber: 2.0 Consensus size: 71
29256509 CCCAATCGGG
*
29256519 TTGTCACACTTTTTGAGCTTCCACTGATTGCAAAGGCTGGTGAATTGACCGCCTTCATTCGCCCA
1 TTGTCACACTTTTTGAGCTTCCACTGATTGCAAAGGCTGGCGAATTGACCGCCTTCATTCGCCCA
29256584 CAGTCC
66 CAGTCC
29256590 TTGTCACACTTTTTGAGCTTCCACTGATTGCAAAGGCTGGCGAATTGACCGCCTTCATTCGCCCA
1 TTGTCACACTTTTTGAGCTTCCACTGATTGCAAAGGCTGGCGAATTGACCGCCTTCATTCGCCCA
29256655 CAGTCC
66 CAGTCC
29256661 TT
1 TT
29256663 ACTAATCTGA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.31
Consensus pattern (71 bp):
TTGTCACACTTTTTGAGCTTCCACTGATTGCAAAGGCTGGCGAATTGACCGCCTTCATTCGCCCA
CAGTCC
Found at i:29258638 original size:26 final size:26
Alignment explanation
Indices: 29258602--29258654 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29258592 CTGGTCTGAT
29258602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
29258628 CTTAGACTGGGGATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29258654 C
1 C
29258655 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29259268 original size:26 final size:26
Alignment explanation
Indices: 29259230--29259282 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29259220 CCGGTCTGAT
29259230 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29259256 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29259282 C
1 C
29259283 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29259771 original size:26 final size:26
Alignment explanation
Indices: 29259742--29259794 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29259732 CTGATCCGAT
29259742 CTTAGA-ATGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29259768 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29259794 C
1 C
29259795 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29260119 original size:514 final size:512
Alignment explanation
Indices: 29259116--29260322 Score: 1356
Period size: 514 Copynumber: 2.4 Consensus size: 512
29259106 AGGAGTACGA
* * * * * *
29259116 GCGCTCAGCCGACTAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTGCCCCCTGCGTGCT
1 GCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACACAGTCCCCCCTGCGTGCT
* * * * *
29259181 ACCGATCCTGTTGCTGGTCCTACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
66 ACCGATCCTGATGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGAATGGGAATGA
* *
29259246 ACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAACGTGCG
131 ACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCG
* ** ** * * *
29259311 GGCGTTCAACCGACCAAAAGGCAAAATACGTAAGCCGAGGACTGGCTCGGTCCCCTCTACGTGCT
196 AGCGCGCAACCGACCAAAAGGCAAAATACGTAAGCCGAGGACCAGCCCGATCCCCCCTACGTGCT
* * *
29259376 ATCGATCCTGCTACCGTAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCC
261 ATCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCC
** *
29259441 TAAGTCAACCCACTAAACGAGCATTCAAGCATTGAGCCAGCCGGAAAGGCATAATGCGCAAGCCG
326 TAAGTCAACCCAAGAAACGAGCATTCAAGCATTGAGCCAGCCGGAAAGGCATAATGCGCAAGCCA
* * ** ** * * **
29259506 GGGATCGACCCGGTCCCCTTCTGTGTGCTGTCGGTCCCACTACCACAACCCTTGATCCGGTTGGG
391 AGGATCGACCCGATCCCCTTCTACGTGCTACCAGTCCCACTACCACAACCCTTCATCCGACTGGG
* *
29259571 GCTTAGACATGGAATGAAGTCCCTACGCCTAAGCCAACCCACGAAACGGGCATGCGG
456 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGG
* * **
29259628 GCGCTCATCCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGTACAGTCCCCCCTGCGTGCT
1 GCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACACAGTCCCCCCTGCGTGCT
* *
29259693 ACCGATCCTGATGCTGGTCCTACTATCGCAACCCTCGGTCTGATCCGATCTTAGAATGGGAATGA
66 ACCGATCCTGATGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGAATGGGAATGA
* * *
29259758 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGCG
131 ACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCG
* ** * * * * *
29259823 AGCGCGCAGCCGACTGGAGAGGTAGAATGCGTAATG-CGGGGACCAGCCCGATCCCCCCTTACGT
196 AGCGCGCAACCGAC-CAAAAGGCAAAATACGTAA-GCCGAGGACCAGCCCGATCCCCCC-TACGT
* ** *
29259887 GCTGTCGATCCTGCTGTCGCAACCCTC-AGTCCGGTCCGATTTTAGACTAGGAATGAACT-TCGT
258 GCTATCGATCCTGCTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTAGGAATGAACTCT-GT
** * *** * *
29259950 ATGCCTAAGTCAATGCAAGAAACGAGCGTTTGGGCGTTGAGCCAGCCGGAGAGGCATAATGCGCA
321 ATGCCTAAGTCAACCCAAGAAACGAGCATTCAAGCATTGAGCCAGCCGGAAAGGCATAATGCGCA
* * * *
29260015 AGCCAAGGATCGGCCCGATCCCGC-TCTACGTGCTACCAGTCCCACTGCCATAACCC-TCATTCT
386 AGCCAAGGATCGACCCGATCCC-CTTCTACGTGCTACCAGTCCCACTACCACAACCCTTCA-TCC
* *
29260078 GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGG
449 GACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGG
* * * ** * * * *
29260142 GCACTCAGCTGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGAC-CCGTCCTCCCTGCGTGTT
1 GCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACACAGTCCCCCCTGCGTGCT
* * *
29260206 GCCGATCCTG-T--T-G--C--C-A---CAACCCTCAGTCCGAT-CGAATCTTAGACTGGGAATG
66 ACCGATCCTGATGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCG-ATCTTAGAATGGGAATG
* * * * * * *
29260258 AAGTCCAAATGCTTAGA-TTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
130 AACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTG
29260322 C
194 C
29260323 AGGTGCTCAG
Statistics
Matches: 587, Mismatches: 99, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
500 3 0.01
501 85 0.14
504 1 0.00
505 1 0.00
507 1 0.00
509 1 0.00
510 1 0.00
512 184 0.31
513 57 0.10
514 252 0.43
515 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (512 bp):
GCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACACAGTCCCCCCTGCGTGCT
ACCGATCCTGATGCTGGTCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGAATGGGAATGA
ACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCG
AGCGCGCAACCGACCAAAAGGCAAAATACGTAAGCCGAGGACCAGCCCGATCCCCCCTACGTGCT
ATCGATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCC
TAAGTCAACCCAAGAAACGAGCATTCAAGCATTGAGCCAGCCGGAAAGGCATAATGCGCAAGCCA
AGGATCGACCCGATCCCCTTCTACGTGCTACCAGTCCCACTACCACAACCCTTCATCCGACTGGG
GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGG
Found at i:29260662 original size:26 final size:26
Alignment explanation
Indices: 29260611--29260662 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
29260601 CCAGTCCGAT
*
29260611 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACGCCATATG
* *
29260637 CTTAGACAT-GGAATGAAGGCCGTATG
1 CTTAGAC-TGGGAATGAACGCCATATG
29260663 TCGAAGCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCATATG
Found at i:29261065 original size:159 final size:158
Alignment explanation
Indices: 29260636--29261055 Score: 479
Period size: 159 Copynumber: 2.7 Consensus size: 158
29260626 AACTCCATAT
** * * * *
29260636 GCTTAGACATGGAATGAAGGCCGTATGTCGAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
* * * ** * *
29260701 CCGGCCGAAGAGGTAGAATGCGCAAGCCGATGATCGGCTCGATCCCCCCTGCGTGATGTCGATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCCGCGTGATGCCGATCC
* * * * *
29260766 TGCTGCTACAACCCTCGATCCGGTCTGA
131 CGCTACCACAACCCCCGATCCAGTCTGA
* * * * *
29260794 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGCGTGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCA
* *
29260858 GCCGGTC-AGAGAGGCATAATGCGCAAG-TCGGGGATCGGCTCGATCCCCCTCCGCGTGCTGCCG
65 GCCGGTCGA-AGAGGCAGAATGCGCAAGCT-GGGGATCGGCTCGATCCCCC-CCGCGTGATGCCG
* * *
29260921 GTCCCGCTACCACAACCCCCGATTCAG-CTGGG
127 ATCCCGCTACCACAACCCCCGATCCAGTCT-GA
* *
29260953 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
* *
29261018 CCGATCGAAGAGGCAGAATGCACAAGCTGGGGATCGGC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGC
29261056 CTGGTCCCCC
Statistics
Matches: 216, Mismatches: 38, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 93 0.43
159 118 0.55
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCCGCGTGATGCCGATCC
CGCTACCACAACCCCCGATCCAGTCTGA
Found at i:29261814 original size:26 final size:26
Alignment explanation
Indices: 29261785--29261835 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29261775 CTGATCCGAT
29261785 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
29261811 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
29261836 TTTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:29262334 original size:26 final size:26
Alignment explanation
Indices: 29262298--29262350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29262288 CTGATCCGAT
* *
29262298 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29262324 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29262350 C
1 C
29262351 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29262837 original size:159 final size:158
Alignment explanation
Indices: 29262323--29263086 Score: 700
Period size: 159 Copynumber: 4.8 Consensus size: 158
29262313 AAGTTCGTAT
* * * ** *
29262323 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * * ** * * *
29262387 GCCGATTGGAGAGGCATAATGCGCAAGCCGGGGATC-GACCTAGTCCCCCTATACGTGCTGCCGG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGGT-CCCCTCTGCGTGCTGCCGA
29262451 TCCCGCTGCCACAACCCTCGGTCCTA-CTGGG
128 TCCCGCTGCCACAACCCTCGGTCC-AGCTGGG
* * * *
29262482 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGTGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * * * * * *
29262547 TCGGCCAGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCGGTCCCCTTTGCGTGCTGTCAAT-C
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCTCTGCGTGCTGCCGATCC
* * ** *
29262611 CGACTACCGCAACCCTCGGTCTGGTCT-GA
131 CG-CTGCCACAACCCTCGGTCCAG-CTGGG
* * * * *
29262640 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * * ** *
29262704 GCCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCTCTCTGCGTGTTATCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCC-CTCTGCGTGCTGCCGAT
*
29262769 CTCGCTGCCACAACCCTCGGTCCAGCTGGG
129 CCCGCTGCCACAACCCTCGGTCCAGCTGGG
* * * ** * *
29262799 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTATGCGAGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * *
29262864 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCC-CTGCGTGTTGCCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCTCTGCGTGCTGCCGATCC
**
29262928 CGCTGCCACAACCCTCGGTCTGGCTGGG
131 CGCTGCCACAACCCTCGGTCCAGCTGGG
** ** * **
29262956 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCATAAAAT-AGGCGTGTAGGGTGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTG-CGGGCACTC
* * ** * * *
29263020 AGTCAGTCGGAGAGGCAGAATGCGCAAGCC-AGGGATCAGCCCCATCCCCCCTGCATGCTGTCGA
64 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGA-GGATCAGCCCGGTCCCCTCTGCGTGCTGCCGA
29263084 TCC
128 TCC
29263087 TACTACCGCA
Statistics
Matches: 486, Mismatches: 105, Indels: 28
0.79 0.17 0.05
Matches are distributed among these distances:
157 90 0.19
158 171 0.35
159 220 0.45
160 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCTCTGCGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCAGCTGGG
Found at i:29263036 original size:317 final size:316
Alignment explanation
Indices: 29262323--29263059 Score: 817
Period size: 317 Copynumber: 2.3 Consensus size: 316
29262313 AAGTTCGTAT
* ** * * ** ** *
29262323 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT-ACGGGTGCTGA
1 GCTTAGACTGGGAATGAACTCCCCATGCATAAGCCAACCCATAAAATGAGCGTGA-GGGCACTCA
* * * *
29262387 GCC-GATTGGAGAGGCATAATGCGCAAGCCGGGGATCGACCTAGTCCCCCTATACGTGCTGCCGG
65 GCCAG-TCGGAGAGGCATAATGCGCAAGCCGAGGATC-AGCTAGTCCCCCTATACGTGCTACCGG
*
29262451 TCCCGCTGCCACAACCCTCGGTCCTACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
128 TCCCGCTGCCACAACCCTCGGTCCTACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * *
29262516 CAACCTACGAAACGAGTGTGCGGGCACTCAATCGGCCAGAGAGGTAGAATGTGCAAGCCGGGGAT
193 CAACCCACGAAACGAGTATGCGAGCACTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGAT
* * * *
29262581 CAGCCCGGTCCCCTTTGCGTGCTGTCAATCCGACTACCGCAACCCTCGGTCTGGTCTGA
258 CAGCCCGATCCCCTCTGCGTGCTGCCAATCCGACTACCACAACCCTCGGTCTGGTCTGA
* ** * * * *
29262640 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCCCATGCATAAGCCAACCCATAAAATGAGCGTGAGGGCACTCAG
* * * * * * * *
29262705 CCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCTCTCTGCGTGTTATCGGTC
66 CCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCT-AGTCCCCCTATACGTGCTACCGGTC
*
29262770 TCGCTGCCACAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
130 CCGCTGCCACAACCCTCGGTCCTA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * *
29262834 AACCCACGAAACGGGTATGCGAGCACTCAACCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATC
194 AACCCACGAAACGAGTATGCGAGCACTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATC
* * * * *
29262899 GGCCCGATCCCC-CTGCGTGTTGCCGATCCCG-CTGCCACAACCCTCGGTCTGG-CTGGG
259 AGCCCGATCCCCTCTGCGTGCTGCCAAT-CCGACTACCACAACCCTCGGTCTGGTCT-GA
* **
29262956 GCTTAGACAT-GGAATGAACTCCCCATGCCTAAGCCAACCCATAAAAT-AGGCGTGTAGGGTGCT
1 GCTTAGAC-TGGGAATGAACTCCCCATGCATAAGCCAACCCATAAAATGA-GCGTG-AGGGCACT
* *
29263019 CAGTCAGTCGGAGAGGCAGAATGCGCAAGCC-AGGGATCAGC
63 CAGCCAGTCGGAGAGGCATAATGCGCAAGCCGA-GGATCAGC
29263060 CCCATCCCCC
Statistics
Matches: 357, Mismatches: 53, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
315 3 0.01
316 80 0.22
317 273 0.76
318 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.18
Consensus pattern (316 bp):
GCTTAGACTGGGAATGAACTCCCCATGCATAAGCCAACCCATAAAATGAGCGTGAGGGCACTCAG
CCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTAGTCCCCCTATACGTGCTACCGGTCC
CGCTGCCACAACCCTCGGTCCTACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGTATGCGAGCACTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAG
CCCGATCCCCTCTGCGTGCTGCCAATCCGACTACCACAACCCTCGGTCTGGTCTGA
Found at i:29264026 original size:26 final size:27
Alignment explanation
Indices: 29263997--29264050 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
29263987 CCGATTCGAT
29263997 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
*
29264023 CTTAGACTGGGGGATGAACTCCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
29264050 C
1 C
29264051 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGGAATGAACTCCGTATG
Found at i:29270875 original size:158 final size:156
Alignment explanation
Indices: 29270606--29271105 Score: 511
Period size: 159 Copynumber: 3.2 Consensus size: 156
29270596 ACTCTGTATG
*
29270606 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCG-GCGCTCAGC
* * ** * * **
29270671 TGGCCGAAGAGGTAGAATGCGCAAG-TTGGGATCGACCTGATACCCCCCTGTGTGCTGTCGATCT
64 TGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCTGAT-CCCCCCTGCGTGCTACCGATCT
* *
29270735 TGCTACCACAACCTTCAGTCTGGTCTGAT
128 TGCTGCCACAACCCTCAGTCTGGTCTGAT
* * ** * * * *
29270764 CATAGACTGGGAATAAACTCCGTATGCAGAAGTCAACCCACGAAACGAAAGTGCAGGCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGC-GGCGCTCAGC
* * * * * *
29270829 TGGCCGAAGAGGCATAATGCGTAAGCCAGAGATCGGCTTGATCCCCCTCTACGTGCTACCGATCA
64 TGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCTGATCCCCC-CTGCGTGCTACCGATCT
* * * *
29270894 TACTGCCACAACCCTCGGTTTGG-CTGAGG
128 TGCTGCCACAACCCTCAGTCTGGTCTGA-T
* ** * * *
29270923 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGACGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGC-GGCGCTCAGC
* * * *
29270988 CGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGAT-CCCCCTGCGTGCTACCGATCTT
64 TGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTACCGATCTT
* * *
29271052 GCTGCCGCAACCCTCAATCCGGTCTGAT
129 GCTGCCACAACCCTCAGTCTGGTCTGAT
29271080 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
29271106 GTTAGACTAG
Statistics
Matches: 273, Mismatches: 61, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 56 0.21
158 91 0.33
159 124 0.45
160 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGCGCTCAGCTG
GCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTACCGATCTTGC
TGCCACAACCCTCAGTCTGGTCTGAT
Found at i:29271110 original size:26 final size:26
Alignment explanation
Indices: 29271081--29271131 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29271071 CGGTCTGATC
29271081 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
* *
29271107 TTAGACTAGGGATGAACTTCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
29271132 CCTATGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:29271193 original size:13 final size:13
Alignment explanation
Indices: 29271175--29271208 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
29271165 CTCAGCCGAC
29271175 CGGAGAGGTCGAT
1 CGGAGAGGTCGAT
*
29271188 CGGAGAGGTTGAT
1 CGGAGAGGTCGAT
29271201 CGGAGAGG
1 CGGAGAGG
29271209 CATACTACGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.24, C:0.12, G:0.50, T:0.15
Consensus pattern (13 bp):
CGGAGAGGTCGAT
Found at i:29271887 original size:158 final size:157
Alignment explanation
Indices: 29271504--29271957 Score: 468
Period size: 157 Copynumber: 2.9 Consensus size: 157
29271494 GCATGCTTAG
*
29271504 ACATGGAACGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAACCGATC
1 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAACCGATC
* * * ** * *
29271569 GAAGAGGTAGAATGCGCAAGTCAGGGATCGGCTTGATCCCCCCTGCGTGCTGTAGATCCTGCTGC
66 GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCAGATCCCGCTGC
** * * *
29271634 TGCAACCCTCAGTCTGGTTGATCTTAG
131 CACAACCCTCAGTCGGGTTGATATTAA
* * * * * * *
29271661 AC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATC-AGCATGTGGGCATTGAGCCGA
1 ACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCGTTCAACCGA
* * * * * * *
29271724 TCGGAGAGGCATAATACGCAAGCCAGGGATTGGCCCGATCCGTCTCTGCGTGCTGCGGGTCCCGC
64 TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCC-CCCCTGCGTGCTGCAGATCCCGC
29271789 TGCCACAACCCTCAGTCGGGTTGGGA-ATTAA
128 TGCCACAACCCTCAGTCGGGTT--GATATTAA
* * * * *
29271820 ACATGGAATGAACTCCTTATGCCTAAGCCAACCCCCGAAACGGGCGTG-GGGCGCTCAACCGACC
1 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAACCGATC
** * * * * * *
29271884 GGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT-CCCCCTGCATGCTACCGATCCTGCTGT
66 GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCAGATCCCGCTGC
29271948 CACAACCCTC
131 CACAACCCTC
29271958 GGTCCGATCC
Statistics
Matches: 239, Mismatches: 51, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
156 29 0.12
157 85 0.36
158 80 0.33
159 42 0.18
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAACCGATC
GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCAGATCCCGCTGC
CACAACCCTCAGTCGGGTTGATATTAA
Found at i:29272021 original size:25 final size:26
Alignment explanation
Indices: 29271971--29272022 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
29271961 CCGATCCGAT
*
29271971 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29271997 CTTAGACTGGG-ATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
29272022 C
1 C
29272023 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 12 0.50
26 11 0.46
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29272338 original size:34 final size:34
Alignment explanation
Indices: 29272295--29272361 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
29272285 ATGAGTTTTA
*
29272295 TCGCCAAATTTGGTAGATGGGATCCTTCTATTTG
1 TCGCCAAATTTGGCAGATGGGATCCTTCTATTTG
*
29272329 TCGCCAAATTTGGCAGATGGGATGCTTCTATTT
1 TCGCCAAATTTGGCAGATGGGATCCTTCTATTT
29272362 ATTTGGTAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (34 bp):
TCGCCAAATTTGGCAGATGGGATCCTTCTATTTG
Found at i:29272483 original size:26 final size:26
Alignment explanation
Indices: 29272445--29272497 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29272435 CTGCTCTGAT
29272445 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
29272471 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
29272497 C
1 C
29272498 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29272878 original size:159 final size:157
Alignment explanation
Indices: 29272470--29272972 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 157
29272460 AACTCCGTAT
* * *
29272470 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGC-GCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCG-GCTGGT-A
** * * * * *
29272534 GTCGATCAGAGACACAGAATGTGTAAGCCGGGGATCGATCCGGTCCCCCGTGCGTGCTGTCGATC
64 GTCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATTGATCCGGTCCCCCCTGCGTGCTGTCGACC
* * ** *
29272599 ATGCTGTCGCAACCCTCGGTCCGGTCTGA
129 ATGCTGCCACAACCCTCAATCCAGTCTGA
* * * * *
29272628 TCTTAGAC-TGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAAAGAGCGTTCGGGCACT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGC-GG--CTGG
* * *
29272691 -AGTCGGTCAGAGAGGCATAATGCGCAAGCTGGGGATTGATCCGGTCCCCCTCTGCGTGCTGTCG
62 TAGTCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATTGATCCGGTCCCCC-CTGCGTGCTGTCG
* * * *
29272755 GCCCTGCTGCCACAACCCTTAATCCAGT-TGGG
126 ACCATGCTGCCACAACCCTCAATCCAGTCT-GA
* *
29272787 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGCTGGTAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAG-CGTGCGGCTGGTA-
* * * * * * *
29272851 GCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATT-AGCTCGGTCCCCCCTGCATGCTGCCGAT
64 GTCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATTGATC-CGGTCCCCCCTGCGTGCTGTCGA-
* * ** *
29272915 CC-TGCTGTCGCAACCCTCGGT-CTGATCTGA
127 CCATGCTGCCACAACCCTCAATCCAG-TCTGA
* *
29272945 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29272973 TTAGACTAAG
Statistics
Matches: 274, Mismatches: 54, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
156 2 0.01
157 5 0.02
158 147 0.54
159 118 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGCTGGTAGT
CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATTGATCCGGTCCCCCCTGCGTGCTGTCGACCAT
GCTGCCACAACCCTCAATCCAGTCTGA
Found at i:29273558 original size:158 final size:157
Alignment explanation
Indices: 29273049--29273580 Score: 502
Period size: 158 Copynumber: 3.4 Consensus size: 157
29273039 CGCTGGCAGC
* * * ** * *
29273049 CCTGCTACCACAACCCTCGGTCCGGCTGGGCCCTAGAC-ATGGAATGAACTCCGTATGCCTATGC
1 CCTGCTACCACAACCCTCGGTCTGGTTCGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGC
* * *
29273113 CAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCGAAGAGGTAGAATGCGCAAGCCAGGGA-
65 CAACCCATGAAACGAGCGTGCGGGTGCTTAGCCGACCGGAGAGGTAGAATGCGCAAG-CAGGGAT
* * *
29273177 CTGCCTTGGTCCCCCCTGCATGCTGTCGAT
129 CAGCC-CGATCCCCCCTGCATGCTGTCGAT
* * ** * * *
29273207 ACTGCTACCACAAGCCTCGGTCCAG-TCTAATCTTGGACTAGGAATGAACTCCGTATGCCTAAGT
1 CCTGCTACCACAACCCTCGGTCTGGTTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * *
29273271 CAACCCATGAAATGAGCGTGCGGGTGCTGAGCCGACCGGAGAGGTATAATGCGCAAGCCGGGATC
65 CAACCCATGAAACGAGCGTGCGGGTGCTTAGCCGACCGGAGAGGTAGAATGCGCAAGCAGGGATC
*
29273336 AGCCCGATCCCCCTCTGCATGCTGTCGGT
130 AGCCCGATCCCCC-CTGCATGCTGTCGAT
* * * * * *
29273365 CCCGCTGCCACAACCCTTGGTTTGGCTAT-G-GCTTAGAC-ATGGAATGAACTCCCTATGCCTAA
1 CCTGCTACCACAACCCTCGGTCTGG-T-TCGATCTTAGACTA-GGAATGAACTCCGTATGCCTAA
* ** ** * **
29273427 GCCAACCCATGAAACGGGCGTGCGGGCACTTAGCCGACCGGAGAGGCGGAATGCGTAAGTTGGGG
63 GCCAACCCATGAAACGAGCGTGCGGGTGCTTAGCCGACCGGAGAGGTAGAATGCGCAAG-CAGGG
* * * *
29273492 ATCGGCCCGATCCCCCATACATGCTGTCAAT
127 ATCAGCCCGATCCCCCCTGCATGCTGTCGAT
* ** *
29273523 CCTACTACTGCAACCCTCGGTCTGGTTCGATCTTAGACTCA-GAATGAACTCCATATGC
1 CCTGCTACCACAACCCTCGGTCTGGTTCGATCTTAGACT-AGGAATGAACTCCGTATGC
29273581 TTAGAGTGGG
Statistics
Matches: 301, Mismatches: 60, Indels: 26
0.78 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 16 0.05
158 263 0.87
159 19 0.06
160 1 0.00
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CCTGCTACCACAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAACGAGCGTGCGGGTGCTTAGCCGACCGGAGAGGTAGAATGCGCAAGCAGGGATCA
GCCCGATCCCCCCTGCATGCTGTCGAT
Found at i:29274314 original size:26 final size:26
Alignment explanation
Indices: 29274275--29274327 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29274265 GGCTCAAACT
29274275 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
29274301 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
29274327 C
1 C
29274328 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:29274653 original size:26 final size:26
Alignment explanation
Indices: 29274617--29274669 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29274607 CTGATTGGAT
29274617 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
29274643 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
29274669 C
1 C
29274670 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:29274724 original size:13 final size:13
Alignment explanation
Indices: 29274706--29274732 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
29274696 CGGGCACTCT
29274706 GTCGGTCGGAGAG
1 GTCGGTCGGAGAG
29274719 GTCGGTCGGAGAG
1 GTCGGTCGGAGAG
29274732 G
1 G
29274733 CAGAATGCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.56, T:0.15
Consensus pattern (13 bp):
GTCGGTCGGAGAG
Found at i:29275146 original size:159 final size:159
Alignment explanation
Indices: 29274863--29275354 Score: 360
Period size: 159 Copynumber: 3.1 Consensus size: 159
29274853 TTAGACATGA
* * *
29274863 AATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGTGCTCAGCCAGTCGGAGAG
1 AATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAG
* * * * *
29274928 GCAGAATGCGCAAGTCGGGGACTGGCCCGGTCCACCCATGCGTGCTGTCGATCCTGCTGCCGCAA
66 GCAGAATGCGCAAGCCGGGGACTGGCCCGGTCCACCCATGCGCGCTGTAGATCCCGCTGCCACAA
29274993 CCCTCAGTCCGATCCAATCTTAGACTGGG
131 CCCTCAGTCCGATCCAATCTTAGACTGGG
* * * *
29275022 AATGAACTCCGTATGCCTAAG-TGAACCCATGAAACGAGCGTTCGGGCGTTGAGCC-GACCGGAG
1 AATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCGGAG
* * *
29275085 AGGCATAATGC-CGAAGCCGGGGA-TCGGCCCGGTCCCCCCCT-CTGCGCTGTTAG-TCCCGCTG
64 AGGCAGAATGCGC-AAGCCGGGGACT-GGCCCGGTCCACCCATGC-GCGCTG-TAGATCCCGCTG
* * * **** *
29275146 CCATAACCCTC-GATCTG-GCTGGGGCCTAGACAT-GG
125 CCACAACCCTCAG-TCCGATC-CAATCTTAGAC-TGGG
* * * * * **
29275181 AATGAACTCCCTATGCCTAAGCCAACCCACTAAAC-AGGCGTACGGGCACTCAGCTGGCCGGAGA
1 AATGAACTCCGTATGCCTAAGCTAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCAGCCGGAGA
* * * * * *** ** * *
29275245 GGCAGAATACGCAAGCCAGGGA-TCAGCCCGGTCC-CCCCTGCGTGCTACCGATCCTACTGCTAA
65 GGCAGAATGCGCAAGCCGGGGACT-GGCCCGGTCCACCCATGCGCGCTGTAGATCCCGCTGCCAC
** * ** *
29275308 AACCCTTGGTCCGGTCTGATCTTACACTGGG
129 AACCCTCAGTCCGATCCAATCTTAGACTGGG
*
29275339 AATGAACTTCGTATGC
1 AATGAACTCCGTATGC
29275355 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 54, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
157 2 0.01
158 56 0.21
159 198 0.76
160 5 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (159 bp):
AATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAG
GCAGAATGCGCAAGCCGGGGACTGGCCCGGTCCACCCATGCGCGCTGTAGATCCCGCTGCCACAA
CCCTCAGTCCGATCCAATCTTAGACTGGG
Found at i:29275364 original size:26 final size:26
Alignment explanation
Indices: 29275328--29275380 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29275318 CCGGTCTGAT
29275328 CTTACACTGGGAATGAACT-TCGTATG
1 CTTACACTGGGAATGAACTCT-GTATG
* *
29275354 CTTAGACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
29275380 C
1 C
29275381 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:29275734 original size:26 final size:26
Alignment explanation
Indices: 29275696--29275748 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29275686 CTGATTCGAT
29275696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29275722 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29275748 C
1 C
29275749 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29276077 original size:159 final size:158
Alignment explanation
Indices: 29275721--29276161 Score: 432
Period size: 159 Copynumber: 2.8 Consensus size: 158
29275711 AACTCCGTAT
* * * *
29275721 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGCACTCAG
* * ** * * *
29275786 CCGGCCGGAGAGGCAGAATATGCAAGTCGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
***
29275851 TGTGACTGTAACCCTCGGTCCGGTCCGA
131 TGTGACCACAACCCTCGGTCCGGTCCGA
** ** ** * * *
29275879 TATTAGAC-TAGGAACAAACTCTATGTGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGCACTCA
* * *
29275943 GTCGGTCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCTG-
65 GTCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCC-CTGCGTGCTGCC-GA
* * * *
29276007 T-CTCGCTG-CCACAACCCTCTGTCTGG-CTGGG
128 TCCT-G-TGACCACAACCCTCGGTCCGGTC-CGA
29276038 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGG-AGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACT-AGCGTGCGGGCA-CTC
* * *
29276101 AGTCGATCGGAGAGGCAGAATGCGCAAG-CTGGGGATCAGCCC-GTCCTCCACTGCGTGCTGC
64 AGTCGGTCGGAGAGGCAGAATGCGCAAGTC-GAGGATCAGCCCGGTCC-CCCCTGCGTGCTGC
29276162 TAATCCTATT
Statistics
Matches: 227, Mismatches: 45, Indels: 22
0.77 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 110 0.48
159 112 0.49
160 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGCACTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
TGTGACCACAACCCTCGGTCCGGTCCGA
Found at i:29276436 original size:26 final size:26
Alignment explanation
Indices: 29276398--29276450 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29276388 GGCTCAAAAT
* *
29276398 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29276424 CTTAGAC-GTGGAATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
29276450 C
1 C
29276451 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29277728 original size:26 final size:26
Alignment explanation
Indices: 29277690--29277745 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
29277680 GGCTTAAAAT
29277690 CTTAGACTAGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
* *
29277716 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAAAGAACTCCGTATG
29277742 CTTA
1 CTTA
29277746 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:29285745 original size:158 final size:152
Alignment explanation
Indices: 29285269--29285767 Score: 444
Period size: 158 Copynumber: 3.2 Consensus size: 152
29285259 ACTCCATACG
29285269 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-CAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
29285333 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCTGTGTGCTGTCAATCCTG
65 CGGCCGGAGAGGCAGAAT--TCAAGCCGGGGATCAACCCG-TCCCCCTGCGTGCTGCCGATCCTG
* *
29285398 CTACCACAACCCTCAGTCCGGTCTGAT
127 CTGCCACAACCCTC-GTCCGGTTTGAT
* * * * *
29285425 CTTACACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
29285490 CGACCGAAGAGGCATAATGTGCAAGCTGGGGATTAGCCTGGTCCCCCTCTGCGTGCT-CCGGTCC
65 CGGCCGGAGAGGCAGAAT-T-CAAGCCGGGGATCAACC-CGT-CCCC-CTGCGTGCTGCCGATCC
* * * * **
29285554 CGCTGCCACAACCCTCGACTCGGCTGGGG
125 TGCTGCCACAACCCTCGTC-CGGTTTGAT
* * * * *
29285583 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGGCATGTGGGCGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAACGAGCGTGCGGGCGCTCAG
* * * * *
29285648 TCGGCCGGAGAGGTAGAATTCTTAAGCCAGGGATCGACCCAGTCCCCCTACGTGCTGCCGATCCT
64 CCGGCCGGAGAGGCAGAATTC--AAGCCGGGGATCAACCC-GTCCCCCTGCGTGCTGCCGATCCT
* * *
29285713 GCTGTCGCAACCCTCGGTCCAGTTTGAT
126 GCTGCCACAACCCTC-GTCCGGTTTGAT
*
29285741 CTTAGACTGGAAATGAATTCCGTATGC
1 CTTAGACTGG-AATGAACTCCGTATGC
29285768 ATAGACTGGG
Statistics
Matches: 267, Mismatches: 61, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 54 0.20
157 45 0.17
158 112 0.42
159 55 0.21
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (152 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAGAATTCAAGCCGGGGATCAACCCGTCCCCCTGCGTGCTGCCGATCCTGCTGC
CACAACCCTCGTCCGGTTTGAT
Found at i:29285782 original size:26 final size:26
Alignment explanation
Indices: 29285743--29285793 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29285733 AGTTTGATCT
*
29285743 TAGACTGGAAATGAATTCCGTATGCA
1 TAGACTGGAAATGAACTCCGTATGCA
**
29285769 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGAAATGAACTCCGTATGC
29285794 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCA
Found at i:29286401 original size:183 final size:184
Alignment explanation
Indices: 29286076--29286501 Score: 563
Period size: 183 Copynumber: 2.3 Consensus size: 184
29286066 CTGCTGCTGG
* * * *
29286076 TCCTGCTGCCGTAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCTC-TACGCTTAGA
1 TCCTGCTGCCGAAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTC-CGTATGCTTAGA
* *
29286140 CATGGAATGAACTTCGTATGCCTAAGCCAACCCATCAAACGAGTGAACGGGCACTCAGCCGGCCA
65 CATGGAACGAACTTCGTATGCCTAAGCCAACCCATCAAACGAGCGAACGGGCACTCAGCCGGCCA
** * * *
29286205 GAGAGGCAGAATGCGTTAGTCGGGGACCGACCCGGT-CCCCCTGTGTGCTATCGA
130 GAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAGTCCCCCCTGCGTGCTATCGA
* * * *
29286259 TCCTGCTGTCGAAACCCTCGGTCCGGTCCGATCTTAGACTTGGTATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCGAAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** * *
29286324 ATGTAACGAAC-TCTGTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCACTCAGTCGGTC
66 ATGGAACGAACTTC-GTATGCCTAAGCCAACCCATC-AAACGAGCGAACGGGCACTCAGCCGGCC
* * *
29286387 GGAGAGGTAGAATGCGCAAGCCGGGGACCGACTCAGTCCCCCCTGCGTGCTATCGA
129 AGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAGTCCCCCCTGCGTGCTATCGA
* * *
29286443 TCCTGCTGCCGCAGCCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTGCCGAAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
29286502 CTAAGTCAAC
Statistics
Matches: 209, Mismatches: 30, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
182 4 0.02
183 136 0.65
184 69 0.33
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (184 bp):
TCCTGCTGCCGAAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAACGAACTTCGTATGCCTAAGCCAACCCATCAAACGAGCGAACGGGCACTCAGCCGGCCAG
AGAGGCAGAATGCGCAAGCCGGGGACCGACCCAGTCCCCCCTGCGTGCTATCGA
Found at i:29286680 original size:159 final size:158
Alignment explanation
Indices: 29286316--29286735 Score: 484
Period size: 159 Copynumber: 2.7 Consensus size: 158
29286306 AACTCCGTAT
* * * * *
29286316 GCTTAGACATGTAACGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* *
29286381 TCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACTCAGTCCCCCCTGCGTGCTATCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCAGTCCCCCCTGCGTGCTATCGATCC
* * * **
29286446 TGCTGCCGCAGCCCTCGATCTGGTCCGA
131 CGCTGCCACAACCCTCGATCTAATCCGA
* * * * *
29286474 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * * * *
29286538 GTCGGCCAGAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGTGTGTTGTCGGT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCAGTCCCCC-CTGCGTGCTATCGAT
* ** *
29286603 CCCGCTGCCACAACCCTCGGT-TCAATTGGG
129 CCCGCTGCCACAACCCTCGATCT-AATCCGA
* * *
29286633 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
*
29286698 TCGGTCGGAGAGGCAGAATGCGCATGCCGGGGATCGAC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
29286736 CCGATCTACC
Statistics
Matches: 213, Mismatches: 45, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
157 1 0.00
158 94 0.44
159 117 0.55
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCAGTCCCCCCTGCGTGCTATCGATCC
CGCTGCCACAACCCTCGATCTAATCCGA
Found at i:29286834 original size:26 final size:26
Alignment explanation
Indices: 29286794--29286849 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
29286784 GGTCTGATCT
29286794 TATGCTTAGACTGGGGATGAACTCTG
1 TATGCTTAGACTGGGGATGAACTCTG
*
29286820 TATGCTTAGAGTGGGGATGAACTCTG
1 TATGCTTAGACTGGGGATGAACTCTG
29286846 TATG
1 TATG
29286850 ACTAAGTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.23, C:0.12, G:0.32, T:0.32
Consensus pattern (26 bp):
TATGCTTAGACTGGGGATGAACTCTG
Found at i:29287891 original size:159 final size:157
Alignment explanation
Indices: 29287542--29287985 Score: 444
Period size: 158 Copynumber: 2.8 Consensus size: 157
29287532 TGAACTTTGT
* * *
29287542 TATGCCTAAGCCATCCCACGAAATGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAATGCGC
* * * * * * ** **
29287607 AAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCTGCAGCCCTCATTTTGA
66 AAGTCGGGGATC-GACCAGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGA
* * * ** *
29287672 TCTGATCTTAGATTGGGAATGAACTCCG
130 GCTGAGCTTAGAATGGGAATGAAAACCC
* * * * *
29287700 TATGCATAAGTCAACCCAAGAAATGAGTGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGC
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAATGCGC
* * * *
29287765 AAGTCGGTGATCAGACCAGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCG
66 AAGTCGGGGATC-GACCAGTCCCCC-CTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCG
*
29287830 -GCTAGGGCTTAGACAT-GGAATGAAAACCC
129 AGCT-GAGCTTAGA-ATGGGAATGAAAACCC
* * * ** *
29287859 TATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGC-TGAATGCG
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCAT-AATGCG
* * * * *
29287923 CAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTCCCGTAACCCTCGGTC
65 CAAGTCGGGGATCGACCAG-TCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTC
29287986 TGGTCTGATC
Statistics
Matches: 231, Mismatches: 50, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
158 117 0.51
159 113 0.49
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (157 bp):
TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAATGCGC
AAGTCGGGGATCGACCAGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGAG
CTGAGCTTAGAATGGGAATGAAAACCC
Found at i:29288754 original size:26 final size:26
Alignment explanation
Indices: 29288716--29288766 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29288706 GGCTCAAAAT
29288716 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
29288742 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
29288767 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:29289031 original size:159 final size:158
Alignment explanation
Indices: 29288743--29289566 Score: 615
Period size: 159 Copynumber: 5.1 Consensus size: 158
29288733 CTCCGTATCC
* *
29288743 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGC-GGCGCTCAGC
1 TTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * ** * * * ** * *
29288806 CGACCGAAGAGGCAGAAAGCGCAAGATGGGGATCAGCTCGGTCACCCCCTGCGCACTATTGATCC
65 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATC-CCCCCTACGTGCTGTCGATCC
* * *
29288871 TGCTGCTGCAACCCCCAGTCCGGTCCGATG
129 TGCTGCAGCAACCCTCAGTCCGGTCTGATG
* * * * * *
29288901 TTAGATTGGGAATGAACTTCATATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCGCTAAGCC
1 TTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC
* * * *
29288966 AGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTTTACGTGCTGTCGGTCCT
66 GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTGTCGATCCT
* **
29289031 GCTGCCA-CAACCCTCAGTTCGG-CTGGGG
130 GCTG-CAGCAACCCTCAGTCCGGTCTGATG
* * * ** *
29289059 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAACGGGCGTGTGGGTGCTCAG
1 -TTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
29289123 TCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCTAGTCCCCCCTACGTGCTGTCGATC
64 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGA-TCCCCCCTACGTGCTGTCGATC
* * * * *
29289187 CTACTACAGCAACCCTCAGTCTGATCTGATC
128 CTGCTGCAGCAACCCTCAGTCCGGTCTGATG
* * * * * * *
29289218 TTGGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCTTAAAACGAGCGTGCAGGCTCTCAGCC
1 TTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC
* * * *
29289283 GGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGCTCGGTCCCCCTCTACGTGCTGTCGATATC
66 GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTGTCG--ATC
* * * *
29289348 GCTGCCGATCCTGCTGCCACAACCCTCGGTCC-GACT-AGGG
128 -CT---G---CTGCAG---CAACCCTCAGTCCGGTCTGA-TG
* * * * *
29289388 CTTAGACAT-GGAATGAACTCCATATACCTAAGCCAACCCACGAAAC-ATGCGTGCGGGTGCTCA
1 -TTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCAGGCGCTCA
* * * * * * * ***
29289451 GTCGGCCGGAGAGGTAGAATGTGCATGCCGGGGATCGGCTCGATCCCCCCCTGTATGCTGTCGAT
63 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAT-CCCCCCTACGTGCTGTCGAT
* * * * *
29289516 CCTGCTGCTGCAACCCTCGGTCCAGTCCGATC
127 CCTGCTGCAGCAACCCTCAGTCCGGTCTGATG
*
29289548 TTAGACTGGGAATGAACTC
1 TTAGAATGGGAATGAACTC
29289567 TGGATGCTTA
Statistics
Matches: 516, Mismatches: 118, Indels: 63
0.74 0.17 0.09
Matches are distributed among these distances:
157 4 0.01
158 170 0.33
159 204 0.40
160 4 0.01
161 4 0.01
162 8 0.02
165 1 0.00
168 6 0.01
169 4 0.01
170 3 0.01
171 102 0.20
172 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC
GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCTG
CTGCAGCAACCCTCAGTCCGGTCTGATG
Found at i:29289317 original size:317 final size:322
Alignment explanation
Indices: 29288742--29289566 Score: 932
Period size: 317 Copynumber: 2.5 Consensus size: 322
29288732 ACTCCGTATC
* * * * *
29288742 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGCGCTCAGCC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGGGGTGCTCAGTC
* * * * * ** * *
29288807 GACCGAAGAGGCAGAAAGCGCAAGATGGGGATC-AGCTCGGTCACCCCCTGCGCACTATTGATCC
66 GGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCT-AGTC-CCCCCTGCGTGCTGTCGATCC
* * * * *
29288871 TGCTGCTGCAACCCCCAGTCCGGTCCGATGTTAGATTGGGAATGAACTTCATATGCATAAGTCAA
129 TGCTGCTGCAACCCTCAGT-CGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAA
* *
29288936 CCCATGAAACGAGCGTGCAGGCGCTAAGCCAGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAG
193 CCCATAAAACGAGCGTGCAGGCGCTAAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCAG
* * * *
29289001 CCCGATCCCCCTTTACGTGC-T-G-T-C-G-G-TCCTGCTGCCACAACCCTCAGTTCGGCTGGGG
258 CCCGATCCCCCTCTACGTGCGTCGATCCTGCGATCCTGCTGCCACAACCCTCAGTCCGACTAGGG
* ** *
29289059 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAACGGGCGTGTGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTG-GGGTGCTCAGT
* * *
29289124 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTAGTCCCCCCTACGTGCTGTCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCTAGTCCCCCCTGCGTGCTGTCGATCCT
* * * * * * * *
29289189 ACTACAGCAACCCTCAGTCTGATCTGATCTTGGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
130 GCTGCTGCAACCCTCAGTC-GATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAAC
* * * *
29289254 CCTTAAAACGAGCGTGCAGGCTCTCAGCCGGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGC
194 CCATAAAACGAGCGTGCAGGCGCTAAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGC
* * *
29289319 TCGGTCCCCCTCTACGTGCTGTCGATATCGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGACT
259 CCGATCCCCCTCTACGTGC-GTCG--ATC-CTG-CGATCCTGCTGCCACAACCCTCAGTCCGACT
29289384 AGGG
319 AGGG
*
29289388 CTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAAC-ATGCGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTG-GGGTGCTCAG
* * * * * **
29289452 TCGGCCGGAGAGGTAGAATGTGCATGCCGGGGATCG-GCTCGATCCCCCCCTGTATGCTGTCGAT
64 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCTAG-T-CCCCCCTGCGTGCTGTCGAT
* *
29289516 CCTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC
127 CCTGCTGCTGCAACCCTCAGTCGA-TCCGATCTTAGACTGGGAATGAACTC
29289567 TGGATGCTTA
Statistics
Matches: 419, Mismatches: 70, Indels: 25
0.82 0.14 0.05
Matches are distributed among these distances:
316 1 0.00
317 190 0.45
318 40 0.10
319 4 0.01
320 1 0.00
323 1 0.00
325 1 0.00
326 1 0.00
328 4 0.01
329 118 0.28
330 58 0.14
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (322 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGGGGTGCTCAGTC
GGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCTAGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCTGCAACCCTCAGTCGATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCC
ATAAAACGAGCGTGCAGGCGCTAAGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCC
GATCCCCCTCTACGTGCGTCGATCCTGCGATCCTGCTGCCACAACCCTCAGTCCGACTAGGG
Found at i:29289585 original size:26 final size:26
Alignment explanation
Indices: 29289547--29289599 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29289537 CCAGTCCGAT
29289547 CTTAGACTGGGAATGAACTCTGGATG
1 CTTAGACTGGGAATGAACTCTGGATG
*
29289573 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGGATG
29289599 C
1 C
29289600 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGGATG
Found at i:29290033 original size:159 final size:158
Alignment explanation
Indices: 29289573--29290075 Score: 403
Period size: 159 Copynumber: 3.2 Consensus size: 158
29289563 ACTCTGGATG
* * ** *
29289573 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTTAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAG
* * * * * * ** *
29289637 CCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGT-CCCCCCTACGTGCTGTCTATC
65 CCAGTCGGAGAGGCAAAATGCGCAAGCC-GGGATCGGCCTGGTCCCCCCCTGCGTGCTACCGATC
* * * *
29289701 TTGCTACTGCAACCCTCGGTCCGGTCTA-AT
129 CTGCTGCTGCAACCCTCGGTTCGG-CTACGT
* ** * * * * *
29289731 CTTAGACTGGGAATTAACTCTGTAAACCCAA-CTCAACCCATGAAATGAGCATGCGGACGTTGAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGACGCTCAG
* * * * * * * * * * * *
29289795 CCGGTCAGAAAAGCATAATGCGCAAGCCGAAGATCAGCCTGATCCCCCTCTGCGTGCTGTCGGTT
65 CCAGTCGGAGAGGCAAAATGCGCAAGCCG-GGATCGGCCTGGTCCCCCCCTGCGTGCT-ACCGAT
** *
29289860 CC-GCTGCCACAACCCTCGATTCGGCTACGT
128 CCTGCTGCTGCAACCCTCGGTTCGGCTACGT
** * *
29289890 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAACGCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAG
* *
29289954 CAAATCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCCTGCGTGCTACCGATC
65 CCAGTCGGAGAGGCAAAATGCGCAAGCC-GGGATCGGCCTGGTCCCCCCCTGCGTGCTACCGATC
* *
29290019 CTGCTGCTGTAACCCTTGGTTCGG-T-CTGAT
129 CTGCTGCTGCAACCCTCGGTTCGGCTAC-G-T
29290049 CTTAGACTGGGAATGAACT-TCGTATGC
1 CTTAGACTGGGAATGAACTCT-GTATGC
29290076 TTAGACATGG
Statistics
Matches: 260, Mismatches: 71, Indels: 27
0.73 0.20 0.08
Matches are distributed among these distances:
157 4 0.02
158 88 0.34
159 163 0.63
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGC
CAGTCGGAGAGGCAAAATGCGCAAGCCGGGATCGGCCTGGTCCCCCCCTGCGTGCTACCGATCCT
GCTGCTGCAACCCTCGGTTCGGCTACGT
Found at i:29290233 original size:26 final size:26
Alignment explanation
Indices: 29290195--29290247 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29290185 GGCTCAAAAT
*
29290195 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29290221 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29290247 C
1 C
29290248 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29290650 original size:159 final size:157
Alignment explanation
Indices: 29290220--29290722 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
29290210 AACTCCGTAT
* * *
29290220 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* * * ** *
29290285 TCGGTCAGAGAGGTAGAATGCGCAAGCCGAGGACCGACCCAATCCCCCCATGCGTGCTATCGATC
66 CCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCG-CCCGGTCCCCCC-TGCATGCTATCGATC
*** * *
29290350 GTGCTACCGCAACCTTCGGTCCGGTCTAA
129 CCACTACCACAACCCTCGGTCCGGTCTAA
* * * * * *
29290379 TCTTAGA-TTGGGAATGAACTCCGC-AGGCCTAAGTCAACCCACAAAACGAGCATGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTC
* * * * * * * *
29290442 AACCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTCGGCATGCTATCGG
64 AGCCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATC-GCCCGGTCCCCC-CTGCATGCTATCGA
* * *
29290507 TCCCACTGCCACAACCCTCGGTCTGG-CTAGG
127 TCCCACTACCACAACCCTCGGTCCGGTCTA-A
*
29290538 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* * * ** *
29290603 CCGGCCAGAGAGGTAGAAAGCGCAAGCCGGGGATCGCCCGGTCCCCCCTGCTTGCTGCCGATCCT
66 CCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGCCCGGTCCCCCCTGCATGCTATCGATCCC
* ** * * * *
29290668 GCTGTCGCAACCCTCAGCCCGGTCCAA
131 ACTACCACAACCCTCGGTCCGGTCTAA
* *
29290695 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
29290723 TTAGACAGGG
Statistics
Matches: 273, Mismatches: 62, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 52 0.19
158 18 0.07
159 200 0.73
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
CCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGCCCGGTCCCCCCTGCATGCTATCGATCCC
ACTACCACAACCCTCGGTCCGGTCTAA
Found at i:29291756 original size:159 final size:159
Alignment explanation
Indices: 29291464--29291956 Score: 365
Period size: 159 Copynumber: 3.1 Consensus size: 159
29291454 GCTTGGACAT
* * * * * * *
29291464 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTTAGCCGACCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGTGTGCGGGTACTGACCCAACCGAAG
* * * * ** *
29291529 AGGCAGAATAAGCAAGCCGAGGTTCGGCTCGATGCCCCCCTACGTGCTGTCGATCCTGCTACCGC
66 AGGCAGAATAAGCAAGCCGAGGATCGACCCGATGCCCCCCTACGTGCTGCCGATCCCACTACCAC
29291594 AACCCTTGGTTCGATCCGATCTTACATTG
131 AACCCTTGGTTCGATCCGATCTTACATTG
* * *
29291623 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGTGTGCGGGTACTGACCCAATCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGTGTGCGGGTACTGACCCAACCGAAG
* * ** * *
29291688 ATGCATAATGCGTAAGCCGAGGATCGACCCGAT-CCCCCTCTACGTGCTGCC-AGTCCCACTGCC
66 AGGCAGAATAAGCAAGCCGAGGATCGACCCGATGCCCCC-CTACGTGCTGCCGA-TCCCACTACC
* * ** *
29291751 ACAACCCTTGGTCTGGCTAGGGAT-TAGACA-T-
129 ACAACCCTTGGT-TCGAT-CCGATCT-TACATTG
* * * * ** * ** * * ** *
29291782 GGAATGAACTCCCTATGCCTAAGCGAACCCATGAAACGGGCGTGCGGGCGCTCAACCGGCCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGTGTGCGGGTACTGACCCAACCGAAG
* * * * * * * *
29291847 AGGCAGAATGCA-CAAGCCGAGGATCGA-CC-AGGTCCCCCTACGTGCTACAGATCCTACTGCCG
66 AGGCAGAAT-AAGCAAGCCGAGGATCGACCCGATGCCCCCCTACGTGCTGCCGATCCCACTACCA
* * * *
29291909 CAACCCTCGG-TCCAGTCCGATCATAGATTG
130 CAACCCTTGGTTCGA-TCCGATCTTACATTG
*
29291939 GCAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
29291957 TTGATCGGGG
Statistics
Matches: 257, Mismatches: 65, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
155 6 0.02
156 2 0.01
157 45 0.18
158 13 0.05
159 180 0.70
160 5 0.02
161 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGTGTGCGGGTACTGACCCAACCGAAG
AGGCAGAATAAGCAAGCCGAGGATCGACCCGATGCCCCCCTACGTGCTGCCGATCCCACTACCAC
AACCCTTGGTTCGATCCGATCTTACATTG
Found at i:29292267 original size:197 final size:196
Alignment explanation
Indices: 29291907--29292280 Score: 432
Period size: 197 Copynumber: 1.9 Consensus size: 196
29291897 ATCCTACTGC
* * * *
29291907 CGCAACCCTCGGTCCAGTCCGATCATAGATTGGCAATGAACTCCGTATGCTTGATCGGGGATGAA
1 CGCAACCCTCAGTCCAGTCCGATCATAGATAGGCAATGAACTCCGTAAGCTTGATCGGGAATGAA
* * * * * * *
29291972 CTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGTCGATCGAAGAGGCATAA
66 CTCTATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAA
* * *
29292037 TGCGTAAGCCGAGGATCAACCCAGTCGCCCCCTGCATGCTATTGATCCTACTGCTGGTCCTGCTA
131 TGCGCAAGCCGAGGATCAACCCAGTCCCCCCCTGCATGCTATCGATCCTACTGCTGGTCCTGCTA
29292102 T
196 T
* * * * *
29292103 CGCAACCCTCAGTCCGGTTCGATCTTAGACTAGG-AATGAACTCTGTAAGCTTAGA-CATGGAAT
1 CGCAACCCTCAGTCCAGTCCGATCATAGA-TAGGCAATGAACTCCGTAAGCTT-GATC-GGGAAT
* * *
29292166 GAACTTTATATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGCCGA-CTGGAGAGGC
63 GAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATC-GAAGAGGC
* * * * *
29292230 AGAATGTGCAAGCGGATGATCGACCC-GATCCCCCCCTGCGTGCTATCGATC
127 AGAATGCGCAAGCCGAGGATCAACCCAG-TCCCCCCCTGCATGCTATCGATC
29292281 TTGCTATTGC
Statistics
Matches: 146, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
196 44 0.30
197 102 0.70
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
CGCAACCCTCAGTCCAGTCCGATCATAGATAGGCAATGAACTCCGTAAGCTTGATCGGGAATGAA
CTCTATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAA
TGCGCAAGCCGAGGATCAACCCAGTCCCCCCCTGCATGCTATCGATCCTACTGCTGGTCCTGCTA
T
Found at i:29292654 original size:158 final size:156
Alignment explanation
Indices: 29292152--29292646 Score: 420
Period size: 159 Copynumber: 3.1 Consensus size: 156
29292142 ACTCTGTAAG
*** *
29292152 CTTAGACATGGAATGAACTTTATATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * * * *
29292217 CGACTGGAGAGGCAGAATGTGCAAGC-GGATGATCGACCCGATCCCCCCCTGCGTGCTATCGATC
65 GGTC-GAAGAGGCAGAATGCGCAAGCTGG-GGATCGGCCCGAT-CCCCCTTACGTGTTGTCGATC
* *** *
29292281 TTGCTATTGCAACCCTCGGTCCGGTCTGAT
127 CTGCTGCCGCAACCCTCGGTCCGATCTGAT
* * * * ** * * * * *
29292311 CTTAGACTAGGAATAAACTCCGTATGCTTAAGTCAACCCACAAAATGAGCATCCGGGCACTGAGC
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG-
* * * *
29292376 CGGTC-AGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTACATGTTGTCGATC
64 CGGTCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCT-TACGTGTTGTCGATC
* * * * **
29292440 CCGCTGCCACAACCCTTGGTCC-AGCTGGGG
127 CTGCTGCCGCAACCCTCGGTCCGATCT-GAT
* * * * **
29292470 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCATGGAACGGGCGTGGGGGCGCTCAGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
*
29292535 TGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGATCCCCCTTACGTGTTGTCGATCCT
65 -GGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTTACGTGTTGTCGATCCT
*
29292600 GCTGCCGTAACCCTCGGTCCGATCTGAT
129 GCTGCCGCAACCCTCGGTCCGATCTGAT
*
29292628 CTTAGATTGGGAATGAACT
1 CTTAGAAT-GGAATGAACT
29292647 TTGTATGCTT
Statistics
Matches: 256, Mismatches: 69, Indels: 23
0.74 0.20 0.07
Matches are distributed among these distances:
157 1 0.00
158 58 0.23
159 190 0.74
160 7 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCG
GTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTTACGTGTTGTCGATCCTGC
TGCCGCAACCCTCGGTCCGATCTGAT
Found at i:29292678 original size:26 final size:26
Alignment explanation
Indices: 29292628--29292680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29292618 CCGATCTGAT
**
29292628 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
29292654 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
29292680 C
1 C
29292681 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:29293056 original size:686 final size:665
Alignment explanation
Indices: 29292151--29294994 Score: 2258
Period size: 686 Copynumber: 4.2 Consensus size: 665
29292141 AACTCTGTAA
** **
29292151 GCTTAGACATGGAATGAACTTTATATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
29292216 CCGACTGGAGAGGCAGAATGTGCAAG-CGGATGATCGACCCGATCCCCCCCTGCGTGCTATCGAT
66 CCGAC-GGAGAGGCAGAATGCGCAAGCCGG-GGATCGACCCGGT-CCCCCCTGCGTGCTGTCGAT
* * * * *
29292280 CTTGCTATTGCAACCCTCGGTCCGG-TCTGATCTTAGACTAGGAATAAACTCCGTATGCTTAAGT
128 CTTGCTACTGCAACCCTCAGTCTGGTTC-GATCTTAGACTAGGAATGAACTCCGTATGCATAAGT
* * * * *
29292344 CAACCCACAAAATGAGCATCCGGGCACTGAGCCGGTCAGAGAGGCATAATGCGCAAGCTGGGGAT
192 CAACCCACGAAACGAGCATGCGGGCACTGAGCCAGACAGAGAGGCATAATGCGCAAGCTGGGGAT
* * * * * * *
29292409 CAGCCCGGTCCCCCTCTACATGTTGTCGATCCCGCTGCCACAACCCTTGGTCCAGCTGGGGCTTA
257 CAGCCCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCC-GCTGGGGCTTA
* * *
29292474 GACATGGAATGAACTCCCTATGCCTAAGCCGACCCATGGAACGGGCGTGGGGGCGCTCAGCTGGT
321 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGGGGGCGCTCAGCTGGT
* * *
29292539 CGAAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGATCCCCCTTACGTGTTGTCGATCCTGCTG
386 CGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCG-TCCCCC-TACGTGCTGTCGATCCTGCTG
* * * ** *
29292604 CCGTAACCCTCGGTCCGATCTGATCTTAGATTGGGAATGAACTTTGTATGCTTAGATTGGGGATG
449 TCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* ** * *
29292669 AACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCTGTCGGAGAGGCCG
514 AACTCCGTATGCCTAAATCAACCCACGAAACGA-C-CGTACGAG--C-G-C--TC----A-GCCA
* ** *
29292734 GTCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTATCGATCCCA
566 GTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCAAGGTCCCCCTCT-CGTGCTACCGATCCCA
*
29292799 CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAGG
630 CTGCCAGT-CTGCTGCCACAAACCTCGGTCCGG-TAGG
** * *
29292837 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
29292902 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCATGCATGCTGTCGATC
66 CC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCC-TGCGTGCTGTCGATC
* * *
29292967 TTGCTGCTGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
129 TTGCTACTGCAACCCTCAGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
* * * * * *
29293032 ACCCATGAAACGAGCGTGCGGGCACTTAG-CAGACCGAAGAGGCATAATGTGTAAGC-GGGGATC
194 ACCCACGAAACGAGCATGCGGGCACTGAGCCAGACAG-AGAGGCATAATGCGCAAGCTGGGGATC
* * ***
29293095 -GACCCGATCCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGATCTGGCCAAGGCTT
258 AG-CCCGAT-CCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTC-CGCTGGGGCTT
* * *
29293159 AGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCAACTCAGCTG
320 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGGGGGC-GCTCAGCTG
* * *
29293224 GCCGGAGAGGCAGAATGCGCAAGCTGAGGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGATCCTG
384 GTCGGAGAGGCAGAATGCGCAAGCTG-GGGATCGGCCC-GTCCC-CCTACGTGCTGTCGATCCTG
*
29293289 CTGTTGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATTGAACTCCGTATGCTTAGGACTGG
446 CTGTCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAA-TGAACTCCGTATGCTTA-GACTGG
*
29293354 GGATGAAAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACGAGCGCTCAGCCAGTCGGA
509 GGATG--AACTCCGTATGCCTAAATCAACCCACGAAACGACCGTACGAGCGCTCAGCCAGTCGGA
* * * ** *
29293419 GAGGCATAATGCGTAAGTCGGGGATCAGCAAGGTCCCCCTCTCGTGCTGCCGATCCCGTTGTCAG
572 GAGGCATAATGCGCAAGCCGGGGATCAGCAAGGTCCCCCTCTCGTGCTACCGATCCCACTGCCAG
* *
29293484 TCTGGTGCCACAAACCTCGGTCCGGTTGG
637 TCTGCTGCCACAAACCTCGGTCCGGTAGG
* * * * *
29293513 GATTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
29293578 TCGGCCAGAGAGGCAAAATGCGCAAGCTGAGGATCGACCCAGTCCCCCCTTCGTTCTGTCGATCC
66 -CCGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCT
* * * *
29293643 TGCTACCGTC-ACCCT-TGATCTGGTTCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
130 TGCTACTG-CAACCCTCAG-TCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTC
* * *
29293706 AACCCACGAAACGAGCATGCGGGCACTGACCCA-ACTGGAGAGGCATAATGCGCAAGGT-GGGAT
193 AACCCACGAAACGAGCATGCGGGCACTGAGCCAGAC-AGAGAGGCATAATGCGCAAGCTGGGGAT
* *
29293769 CAGCCCGAT--CCCTCTGCGTGCTGCCAAT-CCGCTGCGATAACCC-CGGTCCGACTGGGGCTTA
257 CAGCCCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCCG-CTGGGGCTTA
* * * * * * *
29293830 GACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGT-GCGGCGCTCAACCGAT
321 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGGGGGCGCTCAGCTGGT
* * * *
29293894 CGGAGAGGTAGAATGCTCAA-CTCGAGGATCGGCTCGTCCACCCTACGTGCTGTCGATCCTGCTG
386 CGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGTCC-CCCTACGTGCTGTCGATCCTGCTG
* * *
29293958 TCGCAACCCTTGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGGGGATG
449 TCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAA---C-T---C-----C-------G
* * *
29294023 AACTCCATATGCTTAGACTGGGGCATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT-
495 -------TATGCTTAGACTGGGG-ATGAACTCCGTATGCCTAAATCAACCCACGAAACGACCGTA
* * * * * * * *
29294087 CCAGCACTCAGGCCAATCGGAGAGGCAGAATACGCAAGCC-AGGATCAGCTCA-GTCCCTCCT-G
552 CGAGCGCTCA-GCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGC-AAGGTCCC-CCTCT
* * * * * * *
29294149 CGTGCT---G-T-CGA-T--C---CTGCTGCCGCAACCCTCAGTTCGGTCTGA
614 CGTGCTACCGATCCCACTGCCAGTCTGCTGCCACAAACCTCGGTCCGGT-AGG
* * * * * * * * *
29294191 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGCCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * **
29294255 GCCGGCCAAAGAGGCATAATGCGCAAGCCGGGGATC-AGTTCGGTCCCCCGCTGCGTGCTGTC-A
65 GCC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCC-CTGCGTGCTGTCGA
* * ** * ** * * ** * *
29294318 GTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAA
127 -TCTTGCTACTGCAACCCTCAGTCTGGTTCGATCTTAGACTA-GGAATGAACTCCGTATGCATAA
* * * * ** ** * * * * * * *
29294382 GCCAACCCATGAAATGGGTGTGCGGGTGCTCAGCC-GGCCGAAGAGGGAGAATGCGCAACCTAGG
190 GTCAACCCACGAAACGAGCATGCGGGCACTGAGCCAGACAG-AGAGGCATAATGCGCAAGCTGGG
* ** * * * * *
29294446 GATCGGTTCGGTCCCCC-C-GATGTGCTGCCGATCCCGCTGCCACAACCCTTGGCCCAGCTGGGG
254 GATCAGCCCGATCCCCCTCTG-CGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCC-GCTGGGG
* ** * * * * *
29294509 CTCAGACATGGAATGAACTCCCTATGATTAAGCCAACCCATGAAACGGGCATGCAGGGCGATCAA
317 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTG-GGGGCGCTCAG
** * * * ** * * *
29294574 CCAGCCGGAGAGGCAGAATGCGCTAGCCGGGGATCGGCTTGATCCCCCCTGCATGCTGCCGATCC
381 CTGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCG-T-CCCCCTACGTGCTGTCGATCC
** * * * * * *
29294639 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGG
444 TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
* * ** * ** * * * *
29294704 GGATGAACTTCGTATGCCTAAGTCAACCCATAAAATGAGTGTGCGGGCCCTCAGCCGGTCGGAGA
509 GGATGAACTCCGTATGCCTAAATCAACCCACGAAACGACCGTACGAGCGCTCAGCCAGTCGGAGA
** ** * ** * * ** * * *
29294769 GGCATAATGCATAAATCGAGGATCAGCCCGGTGCCCCTCTGCATGCTGTCGATCCCGCTGTCGGT
574 GGCATAATGCGCAAGCCGGGGATCAGCAAGGTCCCCCTCT-CGTGCTACCGATCCCACTGCCAGT
* * *
29294834 CTTGCTGCCAC---CTTCGGTCCAGCTGGG
638 C-TGCTGCCACAAACCTCGGTCC-GGTAGG
* * * * *
29294861 GCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
29294926 CCGGTCGAAGAGACAAAATGTGCAGGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCT
29294991 TGCT
130 TGCT
29294995 GTTGGTCCTA
Statistics
Matches: 1749, Mismatches: 309, Indels: 217
0.77 0.14 0.10
Matches are distributed among these distances:
659 59 0.03
660 35 0.02
661 5 0.00
664 1 0.00
665 5 0.00
666 59 0.03
667 14 0.01
668 26 0.01
669 25 0.01
670 153 0.09
671 16 0.01
672 21 0.01
673 8 0.00
674 2 0.00
675 120 0.07
676 103 0.06
677 47 0.03
678 112 0.06
679 144 0.08
680 14 0.01
681 11 0.01
682 18 0.01
683 56 0.03
684 6 0.00
685 61 0.03
686 346 0.20
687 42 0.02
688 93 0.05
689 81 0.05
690 22 0.01
691 12 0.01
692 32 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (665 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCTT
GCTACTGCAACCCTCAGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGCATGCGGGCACTGAGCCAGACAGAGAGGCATAATGCGCAAGCTGGGGATCAGC
CCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCCGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGGGGGCGCTCAGCTGGTCGGAG
AGGCAGAATGCGCAAGCTGGGGATCGGCCCGTCCCCCTACGTGCTGTCGATCCTGCTGTCGCAAC
CCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCG
TATGCCTAAATCAACCCACGAAACGACCGTACGAGCGCTCAGCCAGTCGGAGAGGCATAATGCGC
AAGCCGGGGATCAGCAAGGTCCCCCTCTCGTGCTACCGATCCCACTGCCAGTCTGCTGCCACAAA
CCTCGGTCCGGTAGG
Found at i:29293108 original size:159 final size:155
Alignment explanation
Indices: 29292838--29293343 Score: 523
Period size: 159 Copynumber: 3.2 Consensus size: 155
29292828 CCGGCTAGGG
* ** *
29292838 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG-
* * * * *
29292903 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCATGCATGCTGTCGATCT
65 CAGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCC-TGCGTGCTGCCGATCC
*
29292968 TGCTGCTGCAACCCTCAGTCTGGTTCGAT
128 TGCTGCTGCAACCCTC-GTCTGGTCCGAT
* * * *
29292997 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
29293061 CAGACCGAAGAGGCATAATGTGTAAGCGGGGATCGACCCGATCCCCCCTCTGCGTGCTGCCAATC
65 CAG-CCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCCGGT-CCCCC-CTGCGTGCTGCCGATC
* ** * *
29293126 CCGCTGCCACAACCCTCGATCTGG-CCAAGG
127 CTGCTGCTGCAACCCTCG-TCTGGTCCGA-T
* * *
29293156 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCAACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC-ACTCAG
* * *
29293221 CTGGCCGGAGAGGCAGAATGCGCAAGCTGAGGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGATC
65 C-AGCCGGAGAGGCAGAATGCGCAAGC-G-GGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATC
* * *
29293286 CTGCTGTTGCAACCCTCGGTCCGATCCGAT
127 CTGCTGCTGCAACCCTC-GTCTGGTCCGAT
*
29293316 CTTAGA-TTGGGAATTGAACTCCGTATGC
1 CTTAGACAT-GGAA-TGAACTCCGTATGC
29293344 TTAGGACTGG
Statistics
Matches: 281, Mismatches: 51, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
158 21 0.07
159 157 0.56
160 68 0.24
161 23 0.08
162 12 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
AGCCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTGC
TGCTGCAACCCTCGTCTGGTCCGAT
Found at i:29294060 original size:27 final size:26
Alignment explanation
Indices: 29293982--29294061 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
29293972 TCGGTCCGAT
* * *
29293982 CTTAGATTGGGAATGAACTCCGTACG
1 CTTAGACTGGGGATGAACTCCGTATG
*
29294008 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
29294034 CTTAGACTGGGGCATGAACTCCGTATG
1 CTTAGACTGGGG-ATGAACTCCGTATG
29294061 C
1 C
29294062 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 34 0.71
27 14 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29294199 original size:210 final size:209
Alignment explanation
Indices: 29293838--29294215 Score: 528
Period size: 210 Copynumber: 1.8 Consensus size: 209
29293828 TAGACATGGA
* * * * * * * * *
29293838 ATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGCGCTCAACCGATCGGAGAGGT
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGCACTCAACCAATCGGAGAGGC
* * * *
29293903 AGAATGCTCAACTCGAGGATCGGCTCGTCCACCCTACGTGCTGTCGATCCTGCTGTCGCAACCCT
66 AGAATACGCAACTCGAGGATCAGCTCGTCCACCCTACGTGCTGTCGATCCTGCTGCCGCAACCCT
**
29293968 TGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCATAT
131 CAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCATAT
29294033 GCTTAGACTGGGGC
196 GCTTAGACTGGGGC
* *
29294047 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATCCAGCACTCAGGCCAATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGCACTCA-ACCAATCGGAGAGG
*
29294112 CAGAATACGCAAGC-C-AGGATCAGCTCAGTCC-CTCCTGCGTGCTGTCGATCCTGCTGCCGCAA
65 CAGAATACGCAA-CTCGAGGATCAGCTC-GTCCAC-CCTACGTGCTGTCGATCCTGCTGCCGCAA
*
29294174 CCCTCAGTTCGGTCTGATCTTAGATTGGGAATGAACTCCGTA
127 CCCTCAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTA
29294216 TGCATAAGTC
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
209 53 0.36
210 92 0.63
211 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (209 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGCACTCAACCAATCGGAGAGGC
AGAATACGCAACTCGAGGATCAGCTCGTCCACCCTACGTGCTGTCGATCCTGCTGCCGCAACCCT
CAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCATAT
GCTTAGACTGGGGC
Found at i:29294370 original size:159 final size:157
Alignment explanation
Indices: 29294107--29294658 Score: 506
Period size: 159 Copynumber: 3.5 Consensus size: 157
29294097 GGCCAATCGG
* * * * * *
29294107 AGAGGCAGAATACGCAAGCCAGGATCAGCTCAGTCCCTCCTGCGTGCTGTCGATCCTGCTGCCGC
1 AGAGGCAGAATGCGCAAGCCGGGATCAGTTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
* * * ** * * *
29294172 AACCCTCAGTTCGGTCT-GATCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGA
66 AACCCTCGGTCCAG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCATGA
* *
29294235 AACAAGCGTGCGGCCGTTGAGCCGGCCAA
129 AACAAGCGTGCGGCCGCTCAGCCGGCCAA
*
29294264 AGAGGCATAATGCGCAAGCCGGGGATCAGTTCGGTCCCCCGCTGCGTGCTGTC-AGTCCTGCTGC
1 AGAGGCAGAATGCGCAAGCC-GGGATCAGTTCGGTCCCCC-CTGCGTGCTGTCGA-TCCTGCTGC
*
29294328 CACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
63 CACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATG
*** * ** *
29294393 AAATGGGTGTGCGGGTGCTCAGCCGGCCGA
128 AAACAAGCGTGCGGCCGCTCAGCCGGCCAA
* * * * *
29294423 AGAGGGAGAATGCGCAA-CCTAGGGATCGGTTCGGTCCCCCC-GATGTGCTGCCGATCCCGCTGC
1 AGAGGCAGAATGCGCAAGCC--GGGATCAGTTCGGTCCCCCCTG-CGTGCTGTCGATCCTGCTGC
* * *
29294486 CACAACCCTTGGCCCAGCTGGGGCTCAGACATGGAATGAACTCCCTATG-ATTAAGCCAACCCAT
63 CACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCA-TAAGCCAACCCAT
** * * * * * **
29294550 GAAACGGGCATGCAGGGCGATCAACCAGCCGG
127 GAAACAAGCGTGC-GGCCGCTCAGCCGGCCAA
* * * * * *
29294582 AGAGGCAGAATGCGCTAGCCGGGGATCGGCTT-GATCCCCCCTGCATGCTGCCGATCCTGCTACC
1 AGAGGCAGAATGCGCAAGCC-GGGATCAG-TTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCC
*
29294646 GCAACCCTCGGTC
64 ACAACCCTCGGTC
29294659 TGGTCTGATC
Statistics
Matches: 327, Mismatches: 55, Indels: 24
0.81 0.14 0.06
Matches are distributed among these distances:
157 19 0.06
158 105 0.32
159 197 0.60
160 6 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
AGAGGCAGAATGCGCAAGCCGGGATCAGTTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAA
CAAGCGTGCGGCCGCTCAGCCGGCCAA
Found at i:29294704 original size:26 final size:26
Alignment explanation
Indices: 29294668--29294720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29294658 CTGGTCTGAT
29294668 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
29294694 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29294720 C
1 C
29294721 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29295063 original size:26 final size:26
Alignment explanation
Indices: 29295041--29295110 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
29295031 TCATAGACTG
29295041 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
29295067 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
*
29295093 GGAATGAACTCCGCATGC
1 GGAATGAACTCCGTATGC
29295111 CTAAGCCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:29302439 original size:32 final size:32
Alignment explanation
Indices: 29302387--29302452 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
29302377 TTAGACTGGG
** * *
29302387 AATGAACTCTGTATGACTAAGTCAACCCATGA
1 AATGAACTCCCTATGACTAAGCCAACCCACGA
*
29302419 AATGAACTCCCTATGCCTAAGCCAACCCACGA
1 AATGAACTCCCTATGACTAAGCCAACCCACGA
29302451 AA
1 AA
29302453 CGGGCGTCCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.20
Consensus pattern (32 bp):
AATGAACTCCCTATGACTAAGCCAACCCACGA
Found at i:29302607 original size:26 final size:26
Alignment explanation
Indices: 29302566--29302616 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29302556 CTGATCTGAT
29302566 CTTAGACTGAGAATGAACTCCGTATA
1 CTTAGACTGAGAATGAACTCCGTATA
* *
29302592 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
29302617 GTCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATA
Found at i:29302986 original size:26 final size:26
Alignment explanation
Indices: 29302946--29302998 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29302936 CTGATCCGAT
*
29302946 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
29302972 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
29302998 C
1 C
29302999 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:29303589 original size:158 final size:158
Alignment explanation
Indices: 29303235--29303593 Score: 477
Period size: 158 Copynumber: 2.3 Consensus size: 158
29303225 GGATTGGCCC
*
29303235 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGACTGGGAATTAGACGTG
1 GGTCCCCC-CTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGACTGGGAATTAGACGTG
*
29303300 GAATGAACTCCATATGCCCAAGCCAACCCACGAAACGTGCGGGCGGGCGCTCAGCTGGACAGAGA
65 GAATGAACTCCATATGCCCAAGCCAACCAACGAAACGTGCGGGCGGGCGCTCAGCTGGACAGAGA
29303365 GGCAGAATGCACAAGCCGGGGATCAGCCT
130 GGCAGAATGCACAAGCCGGGGATCAGCCT
* * * * * * * * * * *
29303394 GATTCCCCCTGCATGCTGTCGGTCCCATTACCACAACCCTTGATCCGGCTGGGAATTAGATGTGG
1 GGTCCCCCCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGACTGGGAATTAGACGTGG
* * *
29303459 AATGAACT-CACTATGCCCAAGCCAACCAACGAAACGTGCGTGCGGGCGCTCAGCTGGCCGGAGA
66 AATGAACTCCA-TATGCCCAAGCCAACCAACGAAACGTGCGGGCGGGCGCTCAGCTGGACAGAGA
** * * *
29303523 GGCAGAATGCGTAAGCTGGGGATCGGCTT
130 GGCAGAATGCACAAGCCGGGGATCAGCCT
* * *
29303552 GGTCCCCCCTGCGTACTGCCAATCCTACTGCCGCAACCCTCG
1 GGTCCCCCCTGCGTGCTGCCGATCCTACTGCCACAACCCTCG
29303594 GTCTGATTCG
Statistics
Matches: 166, Mismatches: 33, Indels: 3
0.82 0.16 0.01
Matches are distributed among these distances:
157 2 0.01
158 158 0.95
159 6 0.04
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.18
Consensus pattern (158 bp):
GGTCCCCCCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGACTGGGAATTAGACGTGG
AATGAACTCCATATGCCCAAGCCAACCAACGAAACGTGCGGGCGGGCGCTCAGCTGGACAGAGAG
GCAGAATGCACAAGCCGGGGATCAGCCT
Found at i:29303632 original size:158 final size:157
Alignment explanation
Indices: 29302972--29303632 Score: 526
Period size: 159 Copynumber: 4.2 Consensus size: 157
29302962 ACTTCGTATG
* *
29302972 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
29303036 CC-AATCAAAGAGGCAGAATGCGCAAGCCAAGG-TCCGGCCCGATCCCCTCTCGCGTGCTGTCGA
65 CCGGA-CAGAGAGGCAGAATGCGCAAGCCGAGGAT-CGGCCCGATCCCCCCT-GCGTGCTGCCGA
* ** * * *
29303099 TCCTGCTACCGTAACCCTC-AGTCTGGTCCAA
127 TCCTACTACCACAACCCTCGA-TCTGATGCGA
** * * * * ** *
29303130 TCTTAGACTGGGAATGAACTTTGTATGACTAAGTCAACCCATGAAACGAGCGTGCGGGCTTTGAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
29303195 CCGGACAGAGTGGCATAATGTGCAAGTCGAGGATTGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
65 CCGGACAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGATC
* * * *
29303260 CTGCTGCCACAACCCTCGATCCGACTGGGA
129 CTACTACCACAACCCTCGATCTGA-TGCGA
* * * *
29303290 ATTAGAC-GTGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGTGCGGGCGGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
29303354 CTGGACAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCTGATTCCCCCTGCATGCTGTCGGTCC
65 CCGGACAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
* * * * * *
29303419 CATTACCACAACCCTTGATCCGGCTGGGA
130 TACTACCACAACCCTCGAT-CTGATGCGA
* * *
29303448 ATTAGA-TGTGGAATGAACTCAC-TATGCCCAAGCCAACCAACGAAACGTGCGTGCGGGCGCTCA
1 CTTAGACTG-GGAATGAACTC-CGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** * * *
29303511 GCTGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTTGGTCCCCCCTGCGTACTGCCAATC
64 GCCGGACAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
* * * *
29303576 CTACTGCCGCAACCCTCGGTCTGATTCGA
129 CTACTACCACAACCCTCGATCTGATGCGA
*
29303605 TCTTAGACTGGGAATGAACTCTGTATGC
1 -CTTAGACTGGGAATGAACTCCGTATGC
29303633 TTAGACTGGG
Statistics
Matches: 400, Mismatches: 89, Indels: 27
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.01
158 179 0.45
159 209 0.52
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGACAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
ACTACCACAACCCTCGATCTGATGCGA
Found at i:29303635 original size:26 final size:26
Alignment explanation
Indices: 29303606--29303658 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29303596 CTGATTCGAT
29303606 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
29303632 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29303658 C
1 C
29303659 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29304258 original size:11 final size:12
Alignment explanation
Indices: 29304238--29304281 Score: 60
Period size: 11 Copynumber: 4.0 Consensus size: 12
29304228 CGGTTAGGCT
29304238 CTCC-GACGATG
1 CTCCTGACGATG
29304249 CTCCTG-CGATG
1 CTCCTGACGATG
29304260 CT-CTGACGATG
1 CTCCTGACGATG
29304271 CTCC-GACGATG
1 CTCCTGACGATG
29304282 GTGCCCTGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 3 0.10
11 25 0.83
12 2 0.07
ACGTcount: A:0.16, C:0.34, G:0.27, T:0.23
Consensus pattern (12 bp):
CTCCTGACGATG
Found at i:29304570 original size:26 final size:26
Alignment explanation
Indices: 29304534--29304583 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
29304524 CTGGTCTGAT
29304534 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
*
29304560 CTTAGACTAGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
29304584 TGCCAAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:29304939 original size:26 final size:26
Alignment explanation
Indices: 29304901--29304953 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29304891 TCGGTCCGAT
*
29304901 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29304927 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29304953 C
1 C
29304954 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29305136 original size:26 final size:26
Alignment explanation
Indices: 29305085--29305137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29305075 CCGGTCCGAT
**
29305085 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29305111 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29305137 C
1 C
29305138 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29305178 original size:184 final size:183
Alignment explanation
Indices: 29304881--29305212 Score: 497
Period size: 184 Copynumber: 1.8 Consensus size: 183
29304871 CTGCTATTGT
*
29304881 AACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
1 AACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
* * * * *
29304946 CCGTATGCCTAAGCCAACCCACGGAATGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATG
66 CCATATGCCAAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATG
29305011 CACAAGCCGAGGATCGGCCCATTCCCTTCTGCATGCTGTTGATCCTGCTGCTGC
131 CACAAGCCGAGGAT-GGCCCATTCCCTTCTGCATGCTGTTGATCCTGCTGCTGC
* *
29305065 AACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAAC
1 AACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAAC
* * * *
29305129 TCCATATGCCAAAGTCAACCCATGAAACGAGCATGCGGGTC-CTCAGCCGGCCGTAGAGGCATAA
65 TCCATATGCCAAAGCCAACCCACGAAACGAGCATGCGGG-CGCTCAGCCGGCCGGAGAGGCAGAA
* *
29305193 TGCGCAAGCCGGGGATGGCC
129 TGCACAAGCCGAGGATGGCC
29305213 TGACCCCCCT
Statistics
Matches: 132, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
183 5 0.04
184 126 0.95
185 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (183 bp):
AACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
CCATATGCCAAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATG
CACAAGCCGAGGATGGCCCATTCCCTTCTGCATGCTGTTGATCCTGCTGCTGC
Found at i:29307485 original size:26 final size:26
Alignment explanation
Indices: 29307446--29307498 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29307436 GGCTCAAAAT
29307446 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
*
29307472 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGCGAATGAACTCCATATG
29307498 C
1 C
29307499 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:29307888 original size:159 final size:158
Alignment explanation
Indices: 29307471--29307904 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 158
29307461 AACTCCATAT
* * * *
29307471 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGT-GTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCAC-TAAAGAGTCGTGCGGGCGCTCA
* * *
29307535 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATC-AGCCCGGTCCCCTCTGCATGCAGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCAGAGGATCGA-CCCGGTCCCCTCTACATGCAGCCGAT
*
29307599 CCTACTGCCTCAACCCTCGATCCGGTCTGA
129 CCTACTGCCACAACCCTCGATCCGGTCTGA
* * * * *
29307629 TCTTAGA-TTGGGAATGAACTCCATATACATAAG-TCAACCCA-TGAAACGAG-CGTGTGGGCGC
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCT-AACCCACT-AAA-GAGTCGTGCGGGCGC
* * * * * * **
29307690 TAAGCCGGTCGAAGAGGCATAATGCGCAAGCCA-AAGATCGACTCGGTAGCCCTCTATGTGCTA-
62 TCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CAGAGGATCGACCCGGT-CCCCTCTACATGC-AG
* * * ** *
29307753 CCGGT-CTCGCTGCCACAACCCTCGGTTTGG-CTGGG
124 CCGATCCT-ACTGCCACAACCCTCGATCCGGTCT-GA
* *
29307788 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACTAAATAGTCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACTAAAGAGTCGTGCGGGCGCTCAG
* * * *
29307853 CCGG-CTGGAGAGGCAGAATGCGTAAGCAGGGGATCGACCCAGTCCCCCCTAC
66 CCGGTC-GGAGAGGCAGAATGCGCAAGCAGAGGATCGACCCGGTCCCCTCTAC
29307905 GTGCTACTGA
Statistics
Matches: 214, Mismatches: 45, Indels: 34
0.73 0.15 0.12
Matches are distributed among these distances:
157 3 0.01
158 96 0.45
159 111 0.52
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACTAAAGAGTCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCAGAGGATCGACCCGGTCCCCTCTACATGCAGCCGATCC
TACTGCCACAACCCTCGATCCGGTCTGA
Found at i:29310171 original size:26 final size:26
Alignment explanation
Indices: 29310135--29310185 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
29310125 CTGATCCAAT
29310135 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29310161 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
29310186 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29310656 original size:159 final size:159
Alignment explanation
Indices: 29310160--29310979 Score: 655
Period size: 159 Copynumber: 5.2 Consensus size: 159
29310150 AACTCCGTAT
* * ** * * *
29310160 GCTTAGAC-TGGGGATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * *
29310224 GCCGAC-CGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCC-AGTCCCCCTCTACGTGCTACCG
65 GCCGGCTCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGA-TCCCCC-CTACGTGCTGCCG
* * * *
29310287 GTCCCGCTGCCACAACCCTCGATTCGACTAGG
128 ATCCCGCTACCACAACCCTCGATCCGACTGGG
* * *
29310319 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCAGGCGCTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGC-TCA
* * * * * *
29310384 -CCGG-TCGGAGAGGCAGAATATGCAAGCCGGGGATCGGTCCGGTCCCCCCTACGTGATGTCGAT
65 GCCGGCTCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGAT
** ** * *
29310447 CTAGCTACTGCAACCCTCGGTCCGATCT-GA
130 CCCGCTACCACAACCCTCGATCCGA-CTGGG
* * * * * * *
29310477 TCTTAGAC-TGGGAATGAACTCCATAT-CCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCC-TAAGCCAACCCACGAAACGAGCGTGCAGGCGCTC
* * *
29310540 AGCTGGCT-GAAGAGGCATAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCG
64 AGCCGGCTCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGCCG
* * *
29310604 GTCCCGCTGCCACAACCCTCGGTCCTG-CTGGG
128 ATCCCGCTACCACAACCCTCGATCC-GACTGGG
* * * * * *
29310636 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
29310701 CC-GATCGGAGAGG-TTGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCATACGTGTTGTCGAT
66 CCGGCTCGGAGAGGCAT-AATACGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGAT
* * * *
29310764 CCTGCTACCACAACCCTAGATCTGGCTGGG
130 CCCGCTACCACAACCCTCGATCCGACTGGG
* * * * * *
29310794 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACAAAACGGGCATGTAGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCA-GGCGCTCA
* * * * ** * *
29310859 GTCGGC-CGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCC-AGTCCCCCCTACATGCTGCTGA
65 GCCGGCTCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGA-TCCCCCCTACGTGCTGCCGA
* ** ** * *
29310922 TTCTACTACCGTAACCCTCGGTCCAGTCT-GG
129 TCCCGCTACCACAACCCTCGATCC-GACTGGG
* *
29310953 TCTTAGAC-TGGGAATGAACTCCATATG
1 GCTTAGACAT-GGAATGAACTCCCTATG
29310980 ATTAGATTGG
Statistics
Matches: 529, Mismatches: 109, Indels: 46
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.01
158 209 0.40
159 303 0.57
160 11 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGCTCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATC
CCGCTACCACAACCCTCGATCCGACTGGG
Found at i:29310736 original size:317 final size:317
Alignment explanation
Indices: 29310161--29310764 Score: 847
Period size: 317 Copynumber: 1.9 Consensus size: 317
29310151 ACTCCGTATG
* * *
29310161 CTTAGACTGGGGATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
* * * *
29310226 CGACCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCAGTCCCCCTCTACGTGCTACCGGTCC
66 CGACCGAAGAGGCATAATACGCAAGCCGAGGATCAGCCCAGTCCCCCTCTACGTGCTACCGGTCC
* *
29310291 CGCTGCCACAACCCTCGATTCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
29310356 CCAACGAAATGAGCGTGCAGGCGCTTCACCGGTCGGAGAGGCAGAATATGCAAGCCGGGGATCGG
196 CCAACGAAATGAGCATGCAAGCGCTTCACCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCGG
* * *
29310421 TCCGGTCCCCCCTACGTGATGTCGATCTAGCTACTGCAACCCTCGGTCCGATCTGAT
261 CCCGATCCCCCATACGTGATGTCGATCTAGCTACTGCAACCCTCGGTCCGATCTGAT
* *
29310478 CTTAGACTGGGAATGAACTCCATAT-CCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAG
1 CTTAGACTGGGAATGAACTCCATATAAC-TAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
* * * * *
29310542 CTGGCTGAAGAGGCATAATACGCAAGCCGGGGATCAGCCC-GATCCCCCTCTACGTGCTGCCGGT
65 CCGACCGAAGAGGCATAATACGCAAGCCGAGGATCAGCCCAG-TCCCCCTCTACGTGCTACCGGT
* *
29310606 CCCGCTGCCACAACCCTCGGTCCTG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
129 CCCGCTGCCACAACCCTCGATCC-GACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * ** *
29310670 CAACCCATGAAATGGGCATGCAAGTGC-TCAGCCGATCGGAGAGGTTGAATGCGCAAGCCGGGGA
193 CAACCAACGAAATGAGCATGCAAGCGCTTCA-CCGATCGGAGAGGCAGAATACGCAAGCCGGGGA
*
29310734 TCGGCCCGATCCCCCATACGTGTTGTCGATC
257 TCGGCCCGATCCCCCATACGTGATGTCGATC
29310765 CTGCTACCAC
Statistics
Matches: 250, Mismatches: 33, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
316 5 0.02
317 244 0.98
318 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
CGACCGAAGAGGCATAATACGCAAGCCGAGGATCAGCCCAGTCCCCCTCTACGTGCTACCGGTCC
CGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCAACGAAATGAGCATGCAAGCGCTTCACCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCGG
CCCGATCCCCCATACGTGATGTCGATCTAGCTACTGCAACCCTCGGTCCGATCTGAT
Found at i:29310940 original size:317 final size:317
Alignment explanation
Indices: 29310160--29310979 Score: 705
Period size: 317 Copynumber: 2.6 Consensus size: 317
29310150 AACTCCGTAT
* ** * * * * * * *
29310160 GCTTAGACTGGGGATGAACTCCGTAT-AACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACTGGGAATGAACTCCACATCCA-TAAGCCAACCCACAAAACGAGTGTGAGGGCACTCA
* * * * * * * * * * *
29310224 GCCGACCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCC-AGTCCCCCTCTACGTGCTACCGG
65 GCTGGCCGAAGAGGCAGAATACGCAAGCCAAGGATCAGCCCGA-TCCCCCTCTACATGCTGCCGA
* * * * * *
29310288 TCCCGCTGCCACAACCCTCGATTC-GACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
129 TCCCACTACCACAACCCTCGGTCCAGTCT-GGGCTTAGACATGGAATGAACTCCATATGCCTAAG
* * * *
29310352 CCAACCAACGAAATGAGCGTGCAGGCGCTTCACCGGTCGGAGAGGCAGAATATGCAAGCCGGGGA
193 CCAACCAACGAAATGAGCATGCAAGCGCTTCACCGATCGGAGAGGCAGAATACGCAAGCCGGGGA
* * * ** * * *
29310417 TCGGTCCGGTCCCCCCTACGTGATGTCGATCTAGCTACTGCAACCCTCGGTCCGATCTGA
258 TCGGCCCGATCCCCCATACGTGATGTCGATCTAGCTACCACAACCCTAGATCCGAGCTGA
* * * * * *
29310477 TCTTAGACTGGGAATGAACTCCATATCCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCACATCCATAAGCCAACCCACAAAACGAGTGTGAGGGCACTCAG
* * ** * *
29310542 CTGGCTGAAGAGGCATAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGGTC
66 CTGGCCGAAGAGGCAGAATACGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGCCGATC
* * * *
29310607 CCGCTGCCACAACCCTCGGTCCTG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
131 CCACTACCACAACCCTCGGTCCAGTCT-GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCC
* * * * ** *
29310671 AACCCATGAAATGGGCATGCAAGTGC-TCAGCCGATCGGAGAGGTTGAATGCGCAAGCCGGGGAT
195 AACCAACGAAATGAGCATGCAAGCGCTTCA-CCGATCGGAGAGGCAGAATACGCAAGCCGGGGAT
* * *
29310735 CGGCCCGATCCCCCATACGTGTTGTCGATCCT-GCTACCACAACCCTAGATCTG-GCTGGG
259 CGGCCCGATCCCCCATACGTGATGTCGAT-CTAGCTACCACAACCCTAGATCCGAGCT-GA
* * **
29310794 GCTTAGACAT-GGAATGAACTCCCCATGCC-TAAGCCAACCCACAAAACGGGCATGT-AGGGTGC
1 GCTTAGAC-TGGGAATGAACTCCACAT-CCATAAGCCAACCCACAAAACGAG--TGTGAGGGCAC
* * * *
29310856 TCAG-TCGGCCGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCC-AGTCCCCC-CTACATGCTG
62 TCAGCT-GGCCGAAGAGGCAGAATACGCAAGCCAAGGATCAGCCCGA-TCCCCCTCTACATGCTG
* * * ** *
29310918 CTGATTCTACTACCGTAACCCTCGGTCCAGTCTGGTCTTAGAC-TGGGAATGAACTCCATATG
125 CCGATCCCACTACCACAACCCTCGGTCCAGTCTGGGCTTAGACAT-GGAATGAACTCCATATG
29310980 ATTAGATTGG
Statistics
Matches: 418, Mismatches: 71, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
316 6 0.01
317 356 0.85
318 53 0.13
319 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACTGGGAATGAACTCCACATCCATAAGCCAACCCACAAAACGAGTGTGAGGGCACTCAG
CTGGCCGAAGAGGCAGAATACGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGCCGATC
CCACTACCACAACCCTCGGTCCAGTCTGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
ACCAACGAAATGAGCATGCAAGCGCTTCACCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCG
GCCCGATCCCCCATACGTGATGTCGATCTAGCTACCACAACCCTAGATCCGAGCTGA
Found at i:29311363 original size:26 final size:26
Alignment explanation
Indices: 29311334--29311386 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29311324 CTGGTCCGAT
29311334 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29311360 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29311386 C
1 C
29311387 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29313027 original size:156 final size:158
Alignment explanation
Indices: 29312676--29313049 Score: 350
Period size: 156 Copynumber: 2.4 Consensus size: 158
29312666 NNNNNTGTCA
* * * * **
29312676 ATCCTGCTGTCGCAACCCTTGGTGCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCATAAG
1 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC-AGGAATGAACTCCATATGCATAAG
* * * * *
29312741 TCAACCCCCGAAACGAGCGTGCGGGCACTGAACCGACCGAAAAGGCATAATGCACAAGCCGAGGA
65 CCAAACCACGAAACGAGCGTGCGGGCACTCAACCGACCGAAAAGGCAGAATGCACAAGCCGAGGA
* *
29312806 TCGGCCCGGTCCCCCTCTGCGTGCTGCTG
130 TCGGCCCGATCACCCTCTGCGTGCTGCTG
* * * *
29312835 GT-CTCACTGCC-CAACCCTCGGTCCGG-CTGGGA-CTTAGACAGGAATGAACTCCCTATGCCTA
1 ATCCT-GCTGCCGCAACCCTCGGTCCGGTCT--GATCTTAGACAGGAATGAACTCCATATGCATA
* ** * * ** * *
29312896 AGCCAAACCATGAAACG-GCGTGCGGGTGCTCAGCC-ACCCGAAGAGGCAGAATGTGCAAGCTGG
63 AGCCAAACCACGAAACGAGCGTGCGGGCACTCAACCGA-CCGAAAAGGCAGAATGCACAAGCCGA
*
29312959 GGATCGGCCCGATCACCC-CTGCGTGCT-ATCG
127 GGATCGGCCCGATCACCCTCTGCGTGCTGCT-G
* * **
29312990 ATCCTGCTGCCGCAACCCTCCGTTCGGTCTGATCTTAGATTGAGAATGAACTCCATATGC
1 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACAG-GAATGAACTCCATATGC
29313050 TTATACTAGG
Statistics
Matches: 172, Mismatches: 33, Indels: 22
0.76 0.15 0.10
Matches are distributed among these distances:
154 1 0.01
155 19 0.11
156 72 0.42
157 52 0.30
158 21 0.12
159 7 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACAGGAATGAACTCCATATGCATAAGC
CAAACCACGAAACGAGCGTGCGGGCACTCAACCGACCGAAAAGGCAGAATGCACAAGCCGAGGAT
CGGCCCGATCACCCTCTGCGTGCTGCTG
Found at i:29313847 original size:159 final size:156
Alignment explanation
Indices: 29313428--29313847 Score: 387
Period size: 159 Copynumber: 2.6 Consensus size: 156
29313418 GCTCCGTATG
* * *
29313428 CTTAGA-AATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGTGCGGGTGC
1 CTTAGACAA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG---G-GCGTGCGGGCGC
* * * *
29313492 TCAGCCGACCGAAGATGCAGAATGCGCAAGCCGGGGACCGGCCCGGTCCCCATTACGTGCTATCG
61 TCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCATTACGTGCTATCG
* * *
29313557 ATCCTGCTATCGCAACCCTCAGTCCGGTCCTAT
126 ATCCCGCTACCACAACCCTCAGTCCGGTCC--T
* * * * * * * * *
29313590 CTTAGACTAGCAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCAGACGCTGACC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
** * ** * * * *
29313655 CGATTGAAGAGGTAGAATGCACAAGCCAAGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCAT-TACGTGCTATCGATCC
* ** *
29313720 CGCTGCCACAACCCTTGGTACAACTGG-GC-
130 CGCTACCACAACCCTCAGT-C--C-GGTCCT
* * *
29313749 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGT
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
*
29313814 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATC
66 CGACCGAAGAGGCAGAATGCACAAGCCGGGGATC
29313848 AATCCGATCC
Statistics
Matches: 202, Mismatches: 50, Indels: 15
0.76 0.19 0.06
Matches are distributed among these distances:
158 49 0.24
159 108 0.53
160 1 0.00
162 41 0.20
163 3 0.01
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (156 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCATTACGTGCTATCGATCCC
GCTACCACAACCCTCAGTCCGGTCCT
Found at i:29313859 original size:159 final size:158
Alignment explanation
Indices: 29313590--29313892 Score: 349
Period size: 159 Copynumber: 1.9 Consensus size: 158
29313580 CCGGTCCTAT
* * * * * *
29313590 CTTAGACTAGCAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCAGACGCTGACC
1 CTTAGACAAGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCACC
** * * *
29313655 CGATTGAAGAGGTAGAATGCACAAGCCAAGGATCGACCTGGTCCCCCTCTGC-GTGCTGTCGATC
66 CGACCGAAGAGGCAGAATGCACAAGCCAAGGATCAACCTGATCCCCC-CT-CAGTGCTGTCGATC
29313719 CCGCTGCCACAACCCTTGGTACAACTGGGC
129 CCGCTGCCACAACCCTTGGTACAACTGGGC
* * * * **
29313749 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGT
1 CTTAGACAAGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCACC
* ** *
29313814 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAATCC-GATCCCCCCTCATTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCACAAGCCAAGGATCAA-CCTGATCCCCCCTCAGTGCTGTCGATCC
* * *
29313878 TGCTGTCACAGCCCT
130 CGCTGCCACAACCCT
29313893 CGGTCTGGTC
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 26 0.22
159 89 0.75
160 2 0.02
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.17
Consensus pattern (158 bp):
CTTAGACAAGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCACC
CGACCGAAGAGGCAGAATGCACAAGCCAAGGATCAACCTGATCCCCCCTCAGTGCTGTCGATCCC
GCTGCCACAACCCTTGGTACAACTGGGC
Found at i:29313948 original size:26 final size:26
Alignment explanation
Indices: 29313909--29313958 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
29313899 GGTCCAATCA
29313909 TAGACTGGGAATGAACTCCGTATGTT
1 TAGACTGGGAATGAACTCCGTATGTT
* *
29313935 TAGACTGGGGATGAACTCTGTATG
1 TAGACTGGGAATGAACTCCGTATG
29313959 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTT
Found at i:29314667 original size:26 final size:26
Alignment explanation
Indices: 29314629--29314684 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
29314619 GGCTCAAAAT
29314629 CTTAGACTAGGAAAGAACTCCATATG
1 CTTAGACTAGGAAAGAACTCCATATG
* * *
29314655 CTTAGAC-ATGGAATGTACTCCGTATG
1 CTTAGACTA-GGAAAGAACTCCATATG
29314681 CTTA
1 CTTA
29314685 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCATATG
Found at i:29315415 original size:26 final size:26
Alignment explanation
Indices: 29315386--29315438 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29315376 CCAGTTCGAT
29315386 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
29315412 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
29315438 C
1 C
29315439 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:29316441 original size:25 final size:26
Alignment explanation
Indices: 29316391--29316442 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
29316381 CCTGTCTGAT
*
29316391 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29316417 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29316442 C
1 C
29316443 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29317443 original size:26 final size:26
Alignment explanation
Indices: 29317414--29317466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29317404 CTGGTCTGAT
29317414 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
29317440 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
29317466 C
1 C
29317467 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:29317897 original size:159 final size:155
Alignment explanation
Indices: 29317633--29318135 Score: 515
Period size: 159 Copynumber: 3.2 Consensus size: 155
29317623 ACTCCATATG
* * * *
29317633 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAATGAGCATGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACC-ACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
29317698 CGGTCGAAGAGGCAGAATGCGTAAGTTAGGGACCGGCCCGGTCCCCCCCTACGTACTGTCGATCC
65 CGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATC-GCCCGG-CCCCCCCTGCGTGCTGTCGATCC
*
29317763 TGCTGTCGTAACCCTCGATCTGATCCAAT
128 TGCTGTC-TAACCCTCGGTCTGATCCAAT
* *
29317792 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCATTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAAACCACGAAACGAGCATGCGGGCGCTCAG
* * ** *
29317856 CCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGACCCCTGCTGCGTGTTGTCGATC
64 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCG-CCCGG-CCCCCCCTGCGTGCTGTCGATC
* * *****
29317921 CTGCTGGCTCAACCCTCGGTTTGATTGGGG
127 CTGCTGTCT-AACCCTCGGTCTGATCCAAT
* * * * *
29317951 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAAACCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
29318016 CGATCGGAGAGGTAGAATGTGCAAGCCAGGGATCGGCCGGCTTCCCCCTGCGTGCTGTCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCGCCCGGC-CCCCCCTGCGTGCTGTCGATCCT
* * * *
29318081 GTTGTCACAACCCTCGGTCTGGTCTAAT
129 GCTGTC-TAACCCTCGGTCTGATCCAAT
29318109 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29318136 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 56, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 67 0.24
159 205 0.73
160 6 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCACGAAACGAGCATGCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCGCCCGGCCCCCCCTGCGTGCTGTCGATCCTGC
TGTCTAACCCTCGGTCTGATCCAAT
Found at i:29318145 original size:26 final size:26
Alignment explanation
Indices: 29318109--29318161 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29318099 CTGGTCTAAT
29318109 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29318135 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29318161 C
1 C
29318162 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29325682 original size:26 final size:26
Alignment explanation
Indices: 29325653--29325705 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29325643 CTGGTTCGAT
*
29325653 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
29325679 CTTAGGCTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29325705 C
1 C
29325706 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29326412 original size:26 final size:26
Alignment explanation
Indices: 29326374--29326426 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29326364 GGCTCAAAAT
29326374 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
29326400 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
29326426 C
1 C
29326427 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29326775 original size:159 final size:159
Alignment explanation
Indices: 29326400--29326893 Score: 488
Period size: 159 Copynumber: 3.1 Consensus size: 159
29326390 ACTCCATATG
*
29326400 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGC-ATTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGA-TCAG
* * * * **
29326464 TCGGTC-AGAGAGGCAGAATGCGCAAG-TCGGGGATCAGCCCGATCCCCCCTGCATGCTATCGAT
65 CCGATCGA-AGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGAT
* * * *
29326527 CCTGCTGCCACAACCCTC-AGTCTGGTCTGAT
128 CCTACTGCCACAACCCTCGACTCAGGTCGGAT
* * * * * *
29326558 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAG
* * * * *
29326622 CCGACCGAAGAGGCATAATGCGCAAGCTGGGGATTAGCCTGGTCCCCCTCTGCGTGCTGCCGGTC
65 CCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGCCGATC
* *
29326687 CTACTGCCACAACCCTCGACTCAGTTGGGA-
129 CTACTGCCACAACCCTCGACTCAGGTCGGAT
* * **
29326717 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TAGGCGTATGGGCGATCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGATCAG
* * * * ** * *
29326781 CCGATTGGAGAGGCAGAATTCGTAAGCCAGGGATCAGCCCAGT-ACCCCTGCGTGCTGCCGATCC
65 CCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * *
29326845 TACTGCCGCAACCCTCG-GTCCAGTTC-GAT
130 TACTGCCACAACCCTCGACT-CAGGTCGGAT
29326874 CTTAGAC-TGGAAATGAACTC
1 CTTAGACATGG-AATGAACTC
29326894 TATATGCATA
Statistics
Matches: 275, Mismatches: 50, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
156 6 0.02
157 54 0.20
158 95 0.35
159 112 0.41
160 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGC
CGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
ACTGCCACAACCCTCGACTCAGGTCGGAT
Found at i:29326925 original size:26 final size:26
Alignment explanation
Indices: 29326876--29326926 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29326866 AGTTCGATCT
*
29326876 TAGACTGGAAATGAACTCTATATGCA
1 TAGACTGGAAATGAACTCCATATGCA
** *
29326902 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGAAATGAACTCCATATGC
29326927 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCATATGCA
Found at i:29327270 original size:26 final size:26
Alignment explanation
Indices: 29327241--29327293 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29327231 CCGATCCGAT
29327241 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29327267 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29327293 C
1 C
29327294 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29327528 original size:184 final size:183
Alignment explanation
Indices: 29327221--29327628 Score: 505
Period size: 184 Copynumber: 2.2 Consensus size: 183
29327211 CTGCTACAGT
* * * *
29327221 AACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGA-TTGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* * *
29327286 TCGTATGCCTAAGCCAACCCACCAACCGAGCGAACGGGCGCTCAGTCGGCCAGAGAGGCAGAATG
65 TCGTATGCCTAAGCCAACCCACAAAACGAGCGAACGGGCGCTCAGCCGGCCAGAGAGGCAGAATG
* * * * *
29327351 CGTC-AGTCGGGGACCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGC
130 CG-CAAGCCGGCGACCGACCCGGTCCCCCCTGCGTACAGTCGATCCTGCTGCCAC
* * * *
29327405 AACCCTCGGTCCGGTCCGATCTTAGAGTTGGTATGATCTCTATATGCTTAGACATGTAATGAAC-
1 AACCCTCGGTCCGGTCCGATCTTAGA-TTGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* *** * *
29327469 TCTGTATGCCTAAGCTAACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGTCGGAGAGGCAGAAT
65 TC-GTATGCCTAAGCCAACCCACAAAACGAGCGAACGGGCGCTCAGCCGGCCAGAGAGGCAGAAT
* *
29327534 GCGCAAGCCGGCGACCGACTCGGTCCCCCCTGCGTACAGTCGATCCTGCTGTCAC
129 GCGCAAGCCGGCGACCGACCCGGTCCCCCCTGCGTACAGTCGATCCTGCTGCCAC
* * **
29327589 AGCCTTCGGTCTAGTCCGATCTTAGATTGGGAATGAACTC
1 AACCCTCGGTCCGGTCCGATCTTAGATT-GGAATGAACTC
29327629 TGTATGCCTA
Statistics
Matches: 190, Mismatches: 31, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
183 5 0.03
184 185 0.97
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (183 bp):
AACCCTCGGTCCGGTCCGATCTTAGATTGGAATGAACTCCATATGCTTAGACATGGAATGAACTT
CGTATGCCTAAGCCAACCCACAAAACGAGCGAACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGC
GCAAGCCGGCGACCGACCCGGTCCCCCCTGCGTACAGTCGATCCTGCTGCCAC
Found at i:29329002 original size:159 final size:158
Alignment explanation
Indices: 29328650--29329108 Score: 390
Period size: 158 Copynumber: 2.9 Consensus size: 158
29328640 CTCAAAATCC
* * * * ** * *
29328650 TAGACTGGGAATGAACTTTGTATGCCTAAGCCATCCCACAAAACGAGCGTACGGGCGCTCAACCG
1 TAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAATTAGTGTGCGGGCGCTCAACCG
* * *
29328715 GCTGAAGAGGCAGAATGCGAAAGTCGGGGACCGGCCCGGTCCCCCCTGCGTTCTGTCGATCCTGC
66 GCTGAAGAGGCAGAATGCGAAAGTCGGGGACCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCCGC
** * * * * *
29328780 TGCTGCAACCCTCATTCTAATTTGATCT
131 TGCCACAACCCTCAGTCCAACTGGAGCT
* * * *
29328808 TAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATTAGTGTGCGGGCGCTGAGCCG
1 TAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAATTAGTGTGCGGGCGCTCAACCG
* * * * * *
29328873 G-TCGAAGAGGCATAATGCGCAAGTCGGTGATCGGCCCAGTCCCCCTCTGCGTGCTGTTGGTCCC
66 GCT-GAAGAGGCAGAATGCGAAAGTCGGGGACCGGCCCAGTCCCCC-CTGCGTGCTGTCGATCCC
**
29328937 GCTGCCACAACCCTCAGTCCGGCTGGAGCT
129 GCTGCCACAACCCTCAGTCCAACTGGAGCT
* * * * *
29328967 TAGACAT-GGAATGAACTGCT-TATGCCTAGGCCAACCCACGAAA-TAGGCGTGCGGGCACTCAG
1 TAGAC-TGGGAATGAACT-CTGTATGCATAAGCCAACCCACGAAATTA-GTGTGCGGGCGCTCAA
** * * * * * * * * *
29329029 CCAACCGGAGA-GCTGAATGCGTAAGCCGGGGATCGACCC-GATCCCCCCTGCATGCTGCCGATC
63 CCGGCTGAAGAGGCAGAATGCGAAAGTCGGGGACCGGCCCAG-TCCCCCCTGCGTGCTGTCGATC
* *
29329092 CTGCTCCCACAACCCTC
127 CCGCTGCCACAACCCTC
29329109 GGTTCGATCC
Statistics
Matches: 241, Mismatches: 53, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 29 0.12
158 121 0.50
159 88 0.37
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
TAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAATTAGTGTGCGGGCGCTCAACCG
GCTGAAGAGGCAGAATGCGAAAGTCGGGGACCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCCGC
TGCCACAACCCTCAGTCCAACTGGAGCT
Found at i:29329881 original size:26 final size:26
Alignment explanation
Indices: 29329843--29329893 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29329833 GGCTCAAAAT
29329843 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
29329869 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
29329894 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:29330444 original size:317 final size:321
Alignment explanation
Indices: 29329869--29330644 Score: 868
Period size: 317 Copynumber: 2.4 Consensus size: 321
29329859 ACTCCGTATC
* * * *
29329869 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCA-T
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
* * * * ** * * *
29329933 CCGACCGAAGAGGCAGAAAGCGCAAGAT-AGGGATCGGCCCGGTCCCCCCTACGTGTTGTTC-AT
66 -CGACCGGAGAGGCAGAATGCGCAAG-TCGGGGATCGACCTAGTCCCCCCTGCGTGCT-ATCGAT
* ** * *
29329996 CCTGCTACTGCAACCCTCAATCCGATCTGATGTTAGACTGGGAATGAACTCCGTATGCATAAGTC
128 CCTACTACCACAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
* * * * *
29330061 AACCCATGAAACGAGCGTACAGGCGCTGAGCCGGTCGAAGAGGCATAATGCATAAGCCGGGGATC
193 AACCCATAAAACGAGCGTACAGGCACTCAGCCGGTCGAAGAGGCATAATGCACAAGCCAGGGATC
29330126 AGCCCGATCCCCCTCT-A-C-G-TGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGGA-TGGGG
258 AGCCCGATCCCCCTCTCAGCTGCTGCTGCCGGTCCCGCTGCCACAACCCTCGATCC-GACTGGGG
* * * * * * *
29330186 CTTAGACATGGAATGAGCCCCTTATGCCTAAGCCAACCCGCGAAACGGGTGTGTGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
* *
29330251 CGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTAGTCCCCCCTGCGTGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTAGTCCCCCCTGCGTGCTATCGATCCT
* * * * * * *
29330316 ACTACCACAACCCTCAGTCTGATCCGATCTTGGACTGGGGATGAACTTCGTATGCCTAAGTTAAC
131 ACTACCACAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
* * * *
29330381 CCTTAAAATGAGCGTAC-GAGCACTCAGCCGGTCGGAGAGGCATAATGCACAAGCTAGGGATCAG
196 CCATAAAACGAGCGTACAG-GCACTCAGCCGGTCGAAGAGGCATAATGCACAAGCCAGGGATCAG
* * *
29330445 CCCGGTCCCCCTCTGCATGCTGTTGATCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGAC
260 CCCGATCCCCCTCT-CA-GC---TG---CTGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGAC
29330510 TGGGG
317 TGGGG
* * * *
29330515 CTCAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGTGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
* * * * * *
29330580 CGGCCGGAGAGGTAGAATGTGCACGCCGGGGATCGACCTAGTCCCCCCTGCATGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTAGTCCCCCCTGCGTGCTATCGATCCT
29330645 GCTGCTTGTC
Statistics
Matches: 379, Mismatches: 63, Indels: 22
0.82 0.14 0.05
Matches are distributed among these distances:
316 4 0.01
317 221 0.58
318 1 0.00
319 1 0.00
321 1 0.00
325 1 0.00
328 2 0.01
329 148 0.39
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (321 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTAGTCCCCCCTGCGTGCTATCGATCCT
ACTACCACAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCATAAAACGAGCGTACAGGCACTCAGCCGGTCGAAGAGGCATAATGCACAAGCCAGGGATCAGC
CCGATCCCCCTCTCAGCTGCTGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGACTGGGG
Found at i:29330723 original size:26 final size:26
Alignment explanation
Indices: 29330685--29330763 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
29330675 CCAGTCCGAT
29330685 CTTAGAC-TGGGAATGAACTCTGGATG
1 CTTAGACAT-GGAATGAACTCTGGATG
29330711 CTTAGACATGGAATGAACTCTGGATG
1 CTTAGACATGGAATGAACTCTGGATG
*
29330737 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGGATG
29330763 C
1 C
29330764 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGGATG
Found at i:29331398 original size:26 final size:26
Alignment explanation
Indices: 29331360--29331412 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29331350 GGCTCAAAAT
*
29331360 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29331386 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29331412 C
1 C
29331413 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29331687 original size:159 final size:157
Alignment explanation
Indices: 29331395--29331887 Score: 519
Period size: 159 Copynumber: 3.1 Consensus size: 157
29331385 GCTTAGACAT
* * * * **
29331395 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCGCTCAGCCGGTTGGAG
1 GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAG
* * * * * *
29331460 AGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCATGCGTGCTGTCGATCCTGCTACCGC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCATGCTTGCTGCCGATCCTGCTGCCGC
29331525 AACCCTCGGTCCGGTCCAATCTTAGATTG
130 AACCCTCGGTCCGGTCCAATCTTAGA-TG
* * * * * *
29331554 GGAATGAACTCCGCAGGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTGAGCCGGTCAGAG
1 GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAG
* * * * * * *
29331619 AGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTGGCTTGCTGCCGGTCCCGTTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCAT-GCTTGCTGCCGATCCTGCTGCCGC
* **
29331684 AACCCTCGGTCTGG-CCAGGGCTTAGGCAT-
130 AACCCTCGGTCCGGTCCA-ATCTTA-G-ATG
* *
29331713 GGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGG-CTAG
1 GGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC-AG
* * ** * *
29331776 AGAGGTAGAAAGCATAAGCCGGGGATC-GCCCGGTCCCCCCTGCTTGCTGCCGATCCTGCTGTCG
64 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCATGCTTGCTGCCGATCCTGCTGCCG
* *
29331840 CAACCCTCAGCCCGGTCCAATCTTAGACTG
129 CAACCCTCGGTCCGGTCCAATCTTAGA-TG
*
29331870 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGCATGC
29331888 TTAGACAGGG
Statistics
Matches: 270, Mismatches: 54, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
155 1 0.00
156 2 0.01
157 50 0.19
158 27 0.10
159 187 0.69
160 2 0.01
161 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.17
Consensus pattern (157 bp):
GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCATGCTTGCTGCCGATCCTGCTGCCGCA
ACCCTCGGTCCGGTCCAATCTTAGATG
Found at i:29333769 original size:158 final size:158
Alignment explanation
Indices: 29333398--29333770 Score: 396
Period size: 159 Copynumber: 2.3 Consensus size: 158
29333388 TGCGTGCTAT
*
29333398 CGATCCTGCTACCGCAACCCTCTGTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCCTA
1 CGATCCTGCTACCGCAACCCTC-GTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCATA
* * * * * *
29333463 AGTCAACCCACGAAATGAGCATGCGAGCACTGAACCAGCCGGAGAGGCATAATGCGCAAGCTGGG
65 AGCCAACCCACGAAAAGAGCATGCGAGCACTCAACCAGCCGAAGAGGCATAATGCGCAAGCCGAG
29333528 GATCAGCCCGGTCCCCCTCTACATGTTAC
130 GATCAGCCCGGTCCCCCTCTACATGTTAC
* * * * * ** *
29333557 CGATCCCGCTACCACAACCCTTGGTC-CAGCTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCA
1 CGATCCTGCTACCGCAACCC-TCGTCTGATCT-GATCTTAGACTA-GGAATGAACTCCATATGCA
* * ** ** * *
29333620 TAAGCCAACCCACGAAACAG-GCGTGCGGGTGCTCAGTCGGCCGAAGAGGTAGT-ATGCGCAAGC
63 TAAGCCAACCCACGAAA-AGAGCATGCGAGCACTCAACCAGCCGAAGAGGCA-TAATGCGCAAGC
** *
29333683 CGAGGATTGGCCTGGT-CCCCTCTACATGTTAC
126 CGAGGATCAGCCCGGTCCCCCTCTACATGTTAC
* *
29333715 CGATCTTGCTACCGTAACCCTCGATCTGATCTGATCTTAGACTAGGAATGAACTCC
1 CGATCCTGCTACCGCAACCCTCG-TCTGATCTGATCTTAGACTAGGAATGAACTCC
29333771 GCATGCTTAG
Statistics
Matches: 171, Mismatches: 35, Indels: 17
0.77 0.16 0.08
Matches are distributed among these distances:
157 2 0.01
158 58 0.34
159 108 0.63
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (158 bp):
CGATCCTGCTACCGCAACCCTCGTCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCATAA
GCCAACCCACGAAAAGAGCATGCGAGCACTCAACCAGCCGAAGAGGCATAATGCGCAAGCCGAGG
ATCAGCCCGGTCCCCCTCTACATGTTAC
Found at i:29333791 original size:26 final size:26
Alignment explanation
Indices: 29333750--29333802 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29333740 CTGATCTGAT
29333750 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* * *
29333776 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
29333802 C
1 C
29333803 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Done.