Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 313 of 402
Found at i:29334229 original size:158 final size:157
Alignment explanation
Indices: 29333989--29334461 Score: 501
Period size: 159 Copynumber: 3.0 Consensus size: 157
29333979 CCATATGCCG
* * *
29333989 AAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCCA-ATC-AGAGAGGCAGAATGTGCAAGTC
1 AAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG-CAGACCGA-AGAGGCAGAATGTGCAAGCC
* * * *
29334052 GGGGATCGA-CCGGTCCCCCCTTGCGTGCTGTCGATCTTGCTATCACAACCCTCAGTCTGGTTCG
64 GGGGATCGACCCGGT-CCCCCTTGCGTGCTGCCGATCCTGCTGTCACAACCCTC-GTCTGGTCCG
29334116 ATCTTAGACTGGGAATGAACTCTGTATGCAT
127 ATCTTAGACTGGGAATGAACTCTGTATGCAT
* * * *
29334147 AAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGCAGACCGAAGAGGCATAATGTGTAAGCCGG
1 AAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCAGACCGAAGAGGCAGAATGTGCAAGCCGG
* * * * *
29334212 GGATCGACCCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGATCTGG-CCAAG
66 GGATCGACCCGGTCCCCCT-TGCGTGCTGCCGATCCTGCTGTCACAACCCTCG-TCTGGTCCGA-
* *
29334276 GCTTAGACAT-GGAATGAACTCCT-TATGCCT
128 TCTTAGAC-TGGGAATGAACT-CTGTATGCAT
* * * * * * * *
29334306 AAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCTGA
1 AAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCAGACCGAAGAGGCAGAATGTGCAAGCCGG
* ** * *
29334371 GGATCGGCCCGGTCCCTCC-TGCGTGCTGCCGATCCTGCTGTTGCAACCCTCGGTCCGATCCGAT
66 GGATCGACCCGGTCCC-CCTTGCGTGCTGCCGATCCTGCTGTCACAACCCTC-GTCTGGTCCGAT
* *
29334435 CTTAGATTGGGAATGAACTCCGTATGC
129 CTTAGACTGGGAATGAACTCTGTATGC
29334462 TTAGACTGGG
Statistics
Matches: 259, Mismatches: 43, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
157 4 0.02
158 120 0.46
159 130 0.50
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
AAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCAGACCGAAGAGGCAGAATGTGCAAGCCGG
GGATCGACCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGTCACAACCCTCGTCTGGTCCGATCT
TAGACTGGGAATGAACTCTGTATGCAT
Found at i:29334314 original size:159 final size:158
Alignment explanation
Indices: 29333921--29334410 Score: 544
Period size: 159 Copynumber: 3.1 Consensus size: 158
29333911 GTCAACCCTA
* * * * * *
29333921 CTGCCGGTCCTGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATCAACTCCATATG
1 CTGCCGATCCTGCTGCCACAACCCTCGATCTGGCCAAGGCTTAGACATGGAATGAACTCCTTATG
* * *
29333986 CCGAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCCA-ATC-AGAGAGGCAGAATGTGCAA
66 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG-CAGACCGA-AGAGGCAGAATGTGCAA
*
29334049 GTCGGGGATCGA-CCGGTCCCCCCTTGCGTG
129 GCCGGGGATCGACCCGGTCCCCCC-TGCGTG
* * ** * * *
29334079 CTGTCGATCTTGCTATCACAACCCTC-AGTCTGGTTCGA-TCTTAGAC-TGGGAATGAACT-CTG
1 CTGCCGATCCTGCTGCCACAACCCTCGA-TCTGG-CCAAGGCTTAGACAT-GGAATGAACTCCT-
* * * * *
29334140 TATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGCAGACCGAAGAGGCATAATGTGT
62 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCAGACCGAAGAGGCAGAATGTGC
*
29334205 AAGCCGGGGATCGACCCGATCCCCCTCTGCGTG
127 AAGCCGGGGATCGACCCGGTCCCCC-CTGCGTG
* *
29334238 CTGCCAATCCCGCTGCCACAACCCTCGATCTGGCCAAGGCTTAGACATGGAATGAACTCCTTATG
1 CTGCCGATCCTGCTGCCACAACCCTCGATCTGGCCAAGGCTTAGACATGGAATGAACTCCTTATG
* * * * * *
29334303 CCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCTGGCCGGAGAGGCAGAATGCGCAAGC
66 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCAGACCGAAGAGGCAGAATGTGCAAGC
* * * *
29334368 TGAGGATCGGCCCGGTCCCTCCTGCGTG
131 CGGGGATCGACCCGGTCCCCCCTGCGTG
29334396 CTGCCGATCCTGCTG
1 CTGCCGATCCTGCTG
29334411 TTGCAACCCT
Statistics
Matches: 270, Mismatches: 50, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 128 0.47
159 132 0.49
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTGCCGATCCTGCTGCCACAACCCTCGATCTGGCCAAGGCTTAGACATGGAATGAACTCCTTATG
CCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCAGACCGAAGAGGCAGAATGTGCAAGC
CGGGGATCGACCCGGTCCCCCCTGCGTG
Found at i:29334464 original size:26 final size:26
Alignment explanation
Indices: 29334435--29334487 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29334425 CCGATCCGAT
*
29334435 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29334461 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29334487 C
1 C
29334488 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29334888 original size:672 final size:670
Alignment explanation
Indices: 29333274--29336115 Score: 2525
Period size: 685 Copynumber: 4.2 Consensus size: 670
29333264 AACTCCGTAT
* * * *
29333274 GCTTAGACATGGAATGAACTCTGTCTGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
** * * ** * * *
29333339 CCGACTGGCGAGGTAAAATGCATAAGTCAAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGACCAGAGAGGCAAAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
29333404 TGCTACCGCAACCCTCTG-TCT-GATCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTC
131 TGCTACCACAACCCT-TGATCTGGTTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * *
29333467 AACCCACGAAATGAGCATGCGAGCACTGAACCAGCCGGAGAGGCATAATGCGCAAGCTGGGGATC
194 AACCCACGAAACGAGCATGCGGGCACTG-ACCAACCGAAGAGGCATAATGCGCAAGCTGGGGATC
* * * * * * * *
29333532 AGCCCGGTCCCCCTCTACATGTTACCGATCCCGCTACCACAACCCTTGGTCCAGCTGGGGCTTAG
258 AGCCCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAG
* * * ** **
29333597 ACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGTCGGCC
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGCC
* * * * * * * * * *
29333662 GAAGAGGTAGTATGCGCAAGCCGAGGATTGGCCTGGTCCCCTCTACATGTTACCGATCTTGCTAC
388 GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCC-CTACGTGCTGCCGATCCTGCTAC
* * * * * *
29333727 CGTAACCCTCGATCTGATCTGATCTTAGACTAGGAATGAACTCCGCATGCTTAGACTGGGGATGA
452 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
* * *
29333792 ACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCTGTCGGAGAGGCCGG
517 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC--GAG-T--GCC--TC----A-GCCAG
* * * * * *
29333857 TCGGAGAGGCATAATGTGCAAGTCGGGGATTAGCCTGGTCCCCCTCTGTGTGCTGTC-AACCCTA
570 TCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTGTCGATCCCT-
* * * *
29333921 CTGCCGGTCCTGCTGCCACAACCCTCGATCCGGCTAGG
634 -TGTCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
* * * * **
29333959 GCTTAGACATGGAATCAACTCCATATGCCGAAGCCAACCCATGAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
29334024 CCAATCAGAGAGGCAGAATGTGCAAGTCGGGGATCGA-CCGGTCCCCCCTTGCGTGCTGTCGATC
66 CCGACCAGAGAGGCAAAATGCGCAAGTCGAGGATCGACCCGGTCCCCCC-TGCGTGCTGTCGATC
* * * * * *
29334088 TTGCTATCACAACCC-TCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
130 CTGCTACCACAACCCTTGA-TCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
29334152 AACCCATGAAACGAGCGTGCGGGCACTTAGCAGACCGAAGAGGCATAATGTGTAAGCCGGGGATC
194 AACCCACGAAACGAGCATGCGGGCACTGACCA-ACCGAAGAGGCATAATGCGCAAGCTGGGGATC
* ** ***
29334217 -GACCCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGATCTGGCCAAGGCTTA
258 AG-CCCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTA
* * * *
29334281 GACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCTGGC
322 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGC
* * * *
29334346 CGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGATCCTGCTG
387 CGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCC-CCTACGTGCTGCCGATCCTGCTA
** *
29334411 TTGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
451 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* *
29334476 AACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACGAGTG-CTCAGCCAGTCGGAGAGGCA
516 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCCTCAGCCAGTCGGAGAGGCA
* * * *
29334540 TAATGCGTAAGCCGGGGATCAGCAAGGTCCCCCTCTCCGTGCTGCCGATCCCGTTGTCAGTCCTG
581 TAATGCGCAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTGTCGATCCC-TTGTCAGTCCTG
* *
29334605 GTGCCACAACCCTCGGTCCGGTTGGG
645 CTGCCACAACCCTCGGTCCGGCTGGG
* * *
29334631 GATTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
29334696 TCGGCCAGAGAGGCAAAATGCGCAAG-CTGAGGATCGACCCAGTCCCCCCTTCGTTCTGTCGATC
66 CCGACCAGAGAGGCAAAATGCGCAAGTC-GAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
* *
29334760 CTGCTACCGTC-ACCCTTGATCTGGTTCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
130 CTGCTACC-ACAACCCTTGATCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * *
29334824 AACCCACGAAACGAGCATGCGGGCACTGACCCAACTGGAGAGGCATAATGCGCAAGGTGGGGATC
194 AACCCACGAAACGAGCATGCGGGCACTGA-CCAACCGAAGAGGCATAATGCGCAAGCTGGGGATC
* * *
29334889 AGCCCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCGATAACCCCCGGTCC-GACTGGGGCTTA
258 AGCCCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCCAG-CTGGGGCTTA
* * * * **
29334953 GACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAACCGAT
322 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGC
* * * *
29335018 CGGAGAGGTAGAATGCTCAA-CTCGAGGATCGGCTCGATCCACCCTACGTGCTGTCGATCCTGCT
387 CGGAGAGGCAGAATGCGCAAGC-CGAGGATCGGCCCGATCC-CCCTACGTGCTGCCGATCCTGCT
** * *
29335082 GTCGCAACCCTTGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGGGGAT
450 ACCGCAACCC-----TCGGT-C---C-------------G-A-TCCG-A-TCTTAGACTGGGAAT
* *
29335147 GAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT-
489 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * *
29335211 CCAG-GCACTCAGCCAATCGGAGAGGCAGAATACGCAAGCCAGGGATCAGCTCA-GTCCCTC-CT
554 CGAGTGC-CTCAGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGC-CAGGTCCCCCTCT
* * * *
29335273 GCGTGC--T-G-T--C--G--A-TCCTGCTGCCGCAACCCTCAGTTCGGTCT-GA
617 GCGTGCTGTCGATCCCTTGTCAGTCCTGCTGCCACAACCCTCGGTCCGG-CTGGG
* * * * * * * *
29335316 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * ** *
29335380 GCCGGCCAAAGAGGCATAATGCGCAAGCCGGGGATC-AGTTCGGTCCCCCGCTGCGTGCTGTCGG
65 GCCGACCAGAGAGGCAAAATGCGCAAGTCGAGGATCGA-CCCGGTCCCCC-CTGCGTGCTGTCGA
* * * ** * * ** *
29335444 TCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAG
128 TCCTGCTACCACAACCCTTGATCTGGTTCGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAG
* * * * ** ** * ** * * *
29335508 CCAACCCATGAAATGGGTGTGCGGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGCAACCTAGGG
192 TCAACCCACGAAACGAGCATGC-GGGCACTGA-CCAACCGAAGAGGCATAATGCGCAAGCTGGGG
* * * * * * *
29335573 ATCGGCTCGGTCCCCC-C-GATGTGCTGCCGATCCCGCTGCCACAACCCTTGGCCCAGCTGGGGC
255 ATCAGCCCGATCCCCCTCTG-CGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCCAGCTGGGGC
** *
29335636 TTCAGACATGGAATGAACTCCCTATGATTAAGCCAACCCATGAAACGGGCATGCAGGGCGA-TCA
319 TT-AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-GGGC-ACTCA
* * * * *
29335700 ACCAG-CGGAGAGGCAGAATGCGCTAGCCGGGGATCGG-CTGATCCCCCCTGCGTGCTGCCGATC
381 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGAT-CCCCCTACGTGCTGCCGATC
* * * *
29335763 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT-CGTATGCTTAGATTG
445 CTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* ** * * *
29335827 GGGATGAACTTCGTATGCCTAAGTCAACCCATAAAATGAGTGTGCG-G-GCCCTCAGCCGGTCGG
510 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTG-CCTCAGCCAGTCGG
** ** * * * * *
29335890 AGAGGCATAATGCATAAATCGAGGATCAGCCCGGTGCCCCTCTGCATGCTGTCGATCCCGCTGTC
574 AGAGGCATAATGCGCAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTGTCGATCCC-TTGTC
* * * *
29335955 GGTCTTGCTG-C-C-ACCTTCGGTCCAGCTGGG
638 AGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
* *
29335985 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * *
29336050 CGGTCGA-AGA-AC-AAATGTGC-AGGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
66 CCGACCAGAGAGGCAAAATGCGCAAGTCGA-GGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
29336111 CTGCT
130 CTGCT
29336116 TTGGTCCTAC
Statistics
Matches: 1747, Mismatches: 328, Indels: 184
0.77 0.15 0.08
Matches are distributed among these distances:
658 1 0.00
659 90 0.05
660 27 0.02
661 1 0.00
662 4 0.00
663 1 0.00
664 2 0.00
665 23 0.01
666 21 0.01
667 1 0.00
668 5 0.00
669 68 0.04
670 2 0.00
671 4 0.00
672 462 0.26
673 22 0.01
674 1 0.00
677 7 0.00
678 1 0.00
679 1 0.00
680 2 0.00
681 6 0.00
682 1 0.00
683 3 0.00
684 16 0.01
685 555 0.32
686 152 0.09
687 116 0.07
688 12 0.01
689 1 0.00
691 1 0.00
693 1 0.00
694 2 0.00
695 1 0.00
696 5 0.00
697 11 0.01
698 117 0.07
699 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (670 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGACCAGAGAGGCAAAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTTGATCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCATGCGGGCACTGACCAACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGC
CCGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGCCGGA
GAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTACGTGCTGCCGATCCTGCTACCGCA
ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCCTCAGCCAGTCGGAGAGGCATAATG
CGCAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTGTCGATCCCTTGTCAGTCCTGCTGCCA
CAACCCTCGGTCCGGCTGGG
Found at i:29335184 original size:26 final size:26
Alignment explanation
Indices: 29335107--29335185 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
29335097 TCGGTCCGAT
* * *
29335107 CTTAGATTGGGAATGAACTCCGTACG
1 CTTAGACTGGGGATGAACTCCGTATG
*
29335133 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
29335159 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29335185 C
1 C
29335186 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29335311 original size:210 final size:210
Alignment explanation
Indices: 29334948--29335340 Score: 535
Period size: 210 Copynumber: 1.9 Consensus size: 210
29334938 TCCGACTGGG
* * * * * *
29334948 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGGCACTCAA
* * * * *
29335013 CCGATCGGAGAGGTAGAATGCTCAACTCGAGGATCGGCTCGATCCACCCTACGTGCTGTCGATCC
66 CCAATCGGAGAGGCAGAATACGCAACTCGAGGATCAGCTCGATCCACCCTACGTGCTGTCGATCC
* **
29335078 TGCTGTCGCAACCCTTGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGG
131 TGCTGCCGCAACCCTCAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGG
29335143 GGATGAACTCCATAT
196 GGATGAACTCCATAT
* *
29335158 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATCCAGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGGCACTCA
* *
29335222 GCCAATCGGAGAGGCAGAATACGCAAGC-C-AGGGATCAGCTC-AGTCC-CTCCTGCGTGCTGTC
65 ACCAATCGGAGAGGCAGAATACGCAA-CTCGA-GGATCAGCTCGA-TCCAC-CCTACGTGCTGTC
*
29335283 GATCCTGCTGCCGCAACCCTCAGTTCGGTCTGATCTTAGATTGGGAATGAACTCCGTA
126 GATCCTGCTGCCGCAACCCTCAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTA
29335341 TGCATAAGTC
Statistics
Matches: 159, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
209 4 0.03
210 154 0.97
211 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (210 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGGCACTCAA
CCAATCGGAGAGGCAGAATACGCAACTCGAGGATCAGCTCGATCCACCCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGG
GGATGAACTCCATAT
Found at i:29335502 original size:159 final size:158
Alignment explanation
Indices: 29335231--29335783 Score: 591
Period size: 159 Copynumber: 3.5 Consensus size: 158
29335221 AGCCAATCGG
* * * * *
29335231 AGAGGCAGAATACGCAAGCCAGGGATCAGCTCAGTCCCTCCTGCGTGCTGTCGATCCTGCTGCCG
1 AGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCA
* * * ** * * *
29335296 CAACCCTCAGTTCGGTCT-GATCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCATG
66 CAACCCTCGGTCCAG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCATG
** * *
29335359 AAACAAGCGTGCGGGCGTTGAGCCGGCCAA
129 AAACGGGCGTGCGGGCGTTCAGCCGGCCGA
* * * * *
29335389 AGAGGCATAATGCGCAAGCCGGGGATCAGTTCGGTCCCCCGCTGCGTGCTGTCGGTCCTGCTGCC
1 AGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGGTCCCCC-CTGCGTGCTGCCGATCCTGCTGCC
*
29335454 ACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
65 ACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGA
* *
29335519 AATGGGTGTGCGGG-GTGCTCAGCCGGCCGA
130 AACGGGCGTGCGGGCGT--TCAGCCGGCCGA
* * *
29335549 AGAGGCAGAATGCGCAA-CCTAGGGATCGGCTCGGTCCCCCC-GATGTGCTGCCGATCCCGCTGC
1 AGAGGCAGAATGCGCAAGCC-AGGGATCAGCTCGGTCCCCCCTG-CGTGCTGCCGATCCTGCTGC
* *
29335612 CACAACCCTTGGCCCAGCTGGGGCTTCAGACATGGAATGAACTCCCTATG-ATTAAGCCAACCCA
64 CACAACCCTCGGTCCAGCTGGGGCTT-AGACATGGAATGAACTCCCTATGCA-TAAGCCAACCCA
* * * * *
29335676 TGAAACGGGCATGCAGGGCGATCAACCAG-CGG
127 TGAAACGGGCGTGC-GGGCGTTCAGCCGGCCGA
* * * * * *
29335708 AGAGGCAGAATGCGCTAGCCGGGGATCGGCT-GATCCCCCCTGCGTGCTGCCGATCCTGCTACCG
1 AGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCA
29335772 CAACCCTCGGTC
66 CAACCCTCGGTC
29335784 TGGTCTGATC
Statistics
Matches: 332, Mismatches: 50, Indels: 26
0.81 0.12 0.06
Matches are distributed among these distances:
158 75 0.23
159 155 0.47
160 98 0.30
161 3 0.01
162 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
AGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCA
CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAA
ACGGGCGTGCGGGCGTTCAGCCGGCCGA
Found at i:29335828 original size:25 final size:26
Alignment explanation
Indices: 29335793--29335844 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
29335783 CTGGTCTGAT
29335793 CTTAGACTGGGAATGAAC-TCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
29335818 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29335844 C
1 C
29335845 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29336210 original size:25 final size:25
Alignment explanation
Indices: 29336150--29336218 Score: 106
Period size: 24 Copynumber: 2.8 Consensus size: 25
29336140 GTCCGGTTCG
*
29336150 ATCTTAGAC-TGGGAATGAACTCTGT
1 ATCTTAGACAT-GGAATGAACTCCGT
29336175 A-CTTAGACATGGAATGAACTCCGT
1 ATCTTAGACATGGAATGAACTCCGT
29336199 ATCTTAGACATGGAATGAAC
1 ATCTTAGACATGGAATGAAC
29336219 CGCATGCCTA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 21 0.51
25 20 0.49
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (25 bp):
ATCTTAGACATGGAATGAACTCCGT
Found at i:29336696 original size:158 final size:156
Alignment explanation
Indices: 29336199--29336696 Score: 458
Period size: 157 Copynumber: 3.2 Consensus size: 156
29336189 TGAACTCCGT
* *
29336199 ATCTTAGACAT-GGAATGAAC-C-GCATGCCTAAGCCAACCCATGAAACGAGCGTG--GGACGCT
1 ATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGG-CGCT
* * * ** *
29336259 CACCCAATCAGAGAGGCAGAATGCATAAGCCAGGGATCGGCCCGAT-CCCCCTGCGTGCTGTCGA
64 AAGCCGATCAGAGAGGCAGAATGCGCAAGCTAGGGATCGG-CCGATCCCCCCTGCGTGCTGTCGA
* * * * *
29336323 TCCTACTGTCGCAACCCTCGATCCGATCTG
128 TCCTGCTGTCACAACCCTCGGTCGGTTC-G
* *
29336353 ATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTA
1 ATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTA
* * * ** ** * *
29336417 AGCCG-GCCGTAGAGGCATAATGCGCAAG-TCAGGGATCGGCCGATCCCTTCTATGTGTTGTCGG
65 AGCCGATCAG-AGAGGCAGAATGCGCAAGCT-AGGGATCGGCCGATCCCCCCTGCGTGCTGTCGA
* * *
29336480 TCCCGCTGCCACAACCCTCGGTCCGGTTGG
128 TCCTGCTGTCACAACCCTCGGT-CGGTTCG
** ** * * *** *
29336510 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCATTTGCTC
1 ATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTA
* * *
29336574 GGTCGATCAGAGAGGCAGAATGCGCAAGCTAGGGATTGGTCCGATCCCCCCTGCGTGCTGTCGAT
65 AGCCGATCAGAGAGGCAGAATGCGCAAGCTAGGGATCGG-CCGATCCCCCCTGCGTGCTGTCGAT
*
29336639 CTTGCTGTCACAACCCTCGGTCTGGTTCG
129 CCTGCTGTCACAACCCTCGGTC-GGTTCG
29336668 ATCTTAGACTGGGAATGAACTCTGTATGC
1 ATCTTAGACTGGGAATGAACTCTGTATGC
29336697 ATAGACTGGG
Statistics
Matches: 269, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
153 1 0.00
154 18 0.07
156 36 0.13
157 140 0.52
158 74 0.28
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAA
GCCGATCAGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGTCACAACCCTCGGTCGGTTCG
Found at i:29336701 original size:26 final size:26
Alignment explanation
Indices: 29336672--29336722 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29336662 GGTTCGATCT
*
29336672 TAGACTGGGAATGAACTCTGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
29336698 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
29336723 CTAAGTCAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:29343789 original size:158 final size:156
Alignment explanation
Indices: 29343346--29343793 Score: 411
Period size: 159 Copynumber: 2.8 Consensus size: 156
29343336 AACTTCGTAT
* ** *
29343346 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
* * * * *
29343411 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGTCTGGCCCGATCCCCTCTTGCATGCTGTCGATC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGATC-GG-CCGATCCCC-CCTGCGTGCTATCGATC
* **
29343476 CTGCTATCGTAACCTTCGGTCCGATCCAA
128 CCGCTATCACAACCTTCGGTCCGATCCAA
* * * * * * *
29343505 TCTTAGAC-TGGGAATGAACTCTGTATGACTAAGTCAACCCATGAAATGAGTGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
* * * * ** * * *
29343569 GCCAGTCAGAGAGGCATAATACGCAAGTCAGGGAAAGGCCCAGTCCCCCTCTGTGTGATATCGAT
65 GCCAGTCGGAGAGGCAGAATGCGCAAGCCA-GGATCGGCCGA-TCCCCC-CTGCGTGCTATCGAT
* * ***
29343634 CCCGCTA-CACAA-CTCTCGGTCTG-GCTGGG
127 CCCGCTATCACAACCT-TCGGTCCGATC-CAA
**
29343663 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGACAGGGCACTC
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTG-C-GGGCACTC
* *
29343728 AG-CATGCCGGAGAGGCAGAATGCGTAAGCCAGGATCGGCCTGATCCCCCCTGCGTGCTATCGAT
64 AGCCA-GTCGGAGAGGCAGAATGCGCAAGCCAGGATCGGCC-GATCCCCCCTGCGTGCTATCGAT
29343792 CC
127 CC
29343794 TGCTGACCGT
Statistics
Matches: 225, Mismatches: 53, Indels: 23
0.75 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 74 0.33
159 116 0.52
160 32 0.14
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGATCGGCCGATCCCCCCTGCGTGCTATCGATCCCG
CTATCACAACCTTCGGTCCGATCCAA
Found at i:29344828 original size:158 final size:157
Alignment explanation
Indices: 29344408--29344829 Score: 479
Period size: 158 Copynumber: 2.7 Consensus size: 157
29344398 TCTTAGATTG
* * * * * * * * *
29344408 GGAATGAACTTCGTATGACTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGGACAGAG
1 GGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCTGGACAGAG
* * ** * * *
29344473 AGGCATAATGTGTAAGCCGGGGATTGGCCTGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCAC
66 AGGCAGAATGCGTAAGCCGGGGA-TCACCTGGTCCCCC-CTGCATGCTACCGATCCCGCTACCAC
* *
29344538 AACCCTCGATTCAACTGGGAATTAGATGT
129 AACCCTCGATCCAACTGGGAATTAGACGT
* * * *
29344567 GGAATGAACTCCATATGCCCAAGCTAACCCATGAAATGTGCGTGCGGGTGCTCAGCTAGACAGAG
1 GGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCTGGACAGAG
* * * * *
29344632 AGGCAGAATGCGTAAGCCGGGGATCAGCATGATTCCCCCTGCATGCTGCCGGTCCCGCTACCACA
66 AGGCAGAATGCGTAAGCCGGGGATCA-CCTGGTCCCCCCTGCATGCTACCGATCCCGCTACCACA
**
29344697 ACCCTCGATCCTGCTGGGAATTAGACGT
130 ACCCTCGATCCAACTGGGAATTAGACGT
* *
29344725 GGAATGAACT-CACTATGCCCAAGCCAACCAATGAAACGTGCGTGCGGGCGCTCAGCTGG-CCGA
1 GGAATGAACTCCA-TATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCTGGACAG-
* *
29344788 AGAGGCAGAATGCGTAAGCTGAGGATCACCTTGGTCCCCCCT
64 AGAGGCAGAATGCGTAAGCCGGGGATCACC-TGGTCCCCCCT
29344830 ACGTACTGCC
Statistics
Matches: 219, Mismatches: 40, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
157 5 0.02
158 133 0.61
159 81 0.37
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCTGGACAGAG
AGGCAGAATGCGTAAGCCGGGGATCACCTGGTCCCCCCTGCATGCTACCGATCCCGCTACCACAA
CCCTCGATCCAACTGGGAATTAGACGT
Found at i:29344839 original size:158 final size:157
Alignment explanation
Indices: 29344241--29344844 Score: 491
Period size: 159 Copynumber: 3.8 Consensus size: 157
29344231 CTTCATATGC
* * * * * * *
29344241 TTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
1 TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCT
* ** * * ** * * * *
29344306 GGTCAGAGAGGCAGAATGCACAAGCTGAGG-TCTGGCTCGATCCTCTCCTGCGTGCTGTCAATCC
66 GGACAGAGAGGCAGAATGCGTAAGCCGGGGATC-ACCT-GGTCC-CCCCTGCGTGCTGCCGATCC
* * ** * * **
29344370 TGCTATCGTAACCCTCGGTCCGA-T-CCAA
128 CGCTACCACAACCCTCGATCCAACTGGGAA
* * * * * * * * *
29344398 TCTTAGA-TTGGGAATGAACTTCGTATGACTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 --TTAGACGT-GGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCA
* * * ** *
29344462 GCCGGACAGAGAGGCATAATGTGTAAGCCGGGGATTGGCCTGGTCCCCCTCTGCGTGCTACCGAT
63 GCTGGACAGAGAGGCAGAATGCGTAAGCCGGGGA-TCACCTGGTCCCCC-CTGCGTGCTGCCGAT
* * *
29344527 CCTGCTGCCACAACCCTCGATTCAACTGGGAA
126 CCCGCTACCACAACCCTCGATCCAACTGGGAA
* * * *
29344559 TTAGATGTGGAATGAACTCCATATGCCCAAGCTAACCCATGAAATGTGCGTGCGGGTGCTCAGCT
1 TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCT
* * * * * *
29344624 AGACAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCATGATTCCCCCTGCATGCTGCCGGTCCCG
66 GGACAGAGAGGCAGAATGCGTAAGCCGGGGATCA-CCTGGTCCCCCCTGCGTGCTGCCGATCCCG
**
29344689 CTACCACAACCCTCGATCCTGCTGGGAA
130 CTACCACAACCCTCGATCCAACTGGGAA
*
29344717 TTAGACGTGGAATGAACT-CACTATGCCCAAGCCAACCAATGAAACGTGCGTGCGGGCGCTCAGC
1 TTAGACGTGGAATGAACTCCA-TATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGC
* * * * * *
29344781 TGG-CCGAAGAGGCAGAATGCGTAAGCTGAGGATCACCTTGGTCCCCCCTACGTACTGCCAATCC
65 TGGACAG-AGAGGCAGAATGCGTAAGCCGGGGATCACC-TGGTCCCCCCTGCGTGCTGCCGATCC
29344845 TACTGTCGCA
Statistics
Matches: 357, Mismatches: 77, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.01
158 146 0.41
159 198 0.55
160 5 0.01
161 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (157 bp):
TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCT
GGACAGAGAGGCAGAATGCGTAAGCCGGGGATCACCTGGTCCCCCCTGCGTGCTGCCGATCCCGC
TACCACAACCCTCGATCCAACTGGGAA
Found at i:29346122 original size:196 final size:192
Alignment explanation
Indices: 29345780--29346403 Score: 653
Period size: 196 Copynumber: 3.2 Consensus size: 192
29345770 CCTACTACTG
* *
29345780 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAAC
1 CAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * * *
29345845 TCTGTATGCCAAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAAT
66 TCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAAT
* * * * *
29345910 GTGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTATTGATCTTGTTGCTGGTCCTGATAC
131 GCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTGTTGATC-TGCTGCTGGTCCTG-TAC
* * * * *
29345974 CGTAACCCTCAGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAAAT-GGAATG
1 C--AACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-ACTGGGGATG
* * * * * *
29346038 AACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAG
63 AACTCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAG
**
29346103 AATGCGCAAGCCGGGGATCGGCCCATTCCCCTCTGCGTGCTGTTGATC--CTGCT-G--CTG---
128 AATGCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTGTTGATCTGCTGCTGGTCCTGTAC
** * * *
29346160 CAACCCTTGGTCCGGTCTAATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
1 CAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * ** * * *
29346225 TCCGTATGCCAAAGTCAACCCATGAAATAAGCATGCAAGTGCTCAGCCGATCGTAGAGGCATAAT
66 TCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAAT
* * * * *
29346290 GCGCAAGCCGGGGAT-AGCCCGACCCCCCTCTACGTGCTGCTGATCCTGCTGCCGGTCCTGCTAC
131 GCGCAAGCCGGGGATCGGCCCG-CTCCCCTCTGCGTGCTGTTGAT-CTGCTGCTGGTCCTG-TA-
29346354 C
192 C
*
29346355 ACAACCCTCAGTTCAG-CTG-TGGCTTAGACAT-GGAATGAACTCCGTATGC
1 -CAACCCTCAGTCCAGTCTGAT--CTTAGAC-TGGGAATGAACTCCGTATGC
29346404 CTAGGTCAAC
Statistics
Matches: 350, Mismatches: 60, Indels: 38
0.78 0.13 0.08
Matches are distributed among these distances:
183 6 0.02
184 136 0.39
185 1 0.00
186 1 0.00
187 4 0.01
188 1 0.00
190 6 0.02
192 1 0.00
193 4 0.01
194 2 0.01
195 2 0.01
196 183 0.52
197 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (192 bp):
CAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAAT
GCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTGTTGATCTGCTGCTGGTCCTGTAC
Found at i:29346210 original size:26 final size:26
Alignment explanation
Indices: 29346181--29346233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29346171 CCGGTCTAAT
*
29346181 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29346207 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29346233 C
1 C
29346234 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29346320 original size:184 final size:184
Alignment explanation
Indices: 29345995--29346341 Score: 464
Period size: 184 Copynumber: 1.9 Consensus size: 184
29345985 GTTCAGTCCG
* *
29345995 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCAAAGCCAAC
* * * ** * *
29346060 CCACGGAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGC
66 CCACGAAATAAGCATGCAAGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGC
** * *
29346125 CCATTCCCCTCTGCGTGCTGTTGATCCTGCTGCTGCAACCCTTGGTCCGGTCTA
131 CCACCCCCCTCTACGTGCTGCTGATCCTGCTGCTGCAACCCTTGGTCCGGTCTA
* * * *
29346179 ATCTTATACTGGGAATGAACTCCGTATGCTTAG-ACTGGGGATGAACTCCGTATGCCAAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAAAT-GGAATGAACTCCGTATGCCAAAGCCAA
* * * * *
29346243 CCCATGAAATAAGCATGCAAGTGCTCAGCCGATCGTAGAGGCATAATGCGCAAGCCGGGGAT-AG
65 CCCACGAAATAAGCATGCAAGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG
29346307 CCCGACCCCCCTCTACGTGCTGCTGATCCTGCTGC
130 CCC-ACCCCCCTCTACGTGCTGCTGATCCTGCTGC
29346342 CGGTCCTGCT
Statistics
Matches: 139, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
183 6 0.04
184 133 0.96
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCAAAGCCAAC
CCACGAAATAAGCATGCAAGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGC
CCACCCCCCTCTACGTGCTGCTGATCCTGCTGCTGCAACCCTTGGTCCGGTCTA
Found at i:29346349 original size:380 final size:378
Alignment explanation
Indices: 29345616--29346403 Score: 1078
Period size: 380 Copynumber: 2.1 Consensus size: 378
29345606 GTGGCTCAAA
* *
29345616 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
29345681 CCACGAAACGAACGTGCAGGCGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCGAGAATCGGC
66 CCACGAAACGAACGTGCAGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGAGAATCGGC
* *
29345746 CCATTCCCCCTGCGTGTTGTTGATCCTACTACTGCAACCCTCAGTCCGGTCTGATCTTAGACTGG
131 CCATTCCCCCTGCGTGCTGTTGATCCTACTACTGCAACCCTCAGTCCGGTCTAATCTTAGACTGG
* *
29345811 GAATGAACTCCGTACGCTTAGACTGGGGATGAACTCTGTATGCCAAAGTCAACCCATGAAACGAG
196 GAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAAG
** ** * * * * **
29345876 TGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCTCT
261 CATGCAAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGCCCCCCTCT
* * * * * **
29345941 GCGTGCTATTGATCTTGTTGCTGGTCCTGATACCGTAACCCTCAGTTCAGTCCG
326 ACGTGCTACTGATCCTGCTGCCGGTCCTGATACCACAACCCTCAGTTCAG-CCG
*
29345995 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
29346060 CCACGGAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGC
66 CCACGAAACGAACGTGCAGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGAGAATCGGC
* * ** *
29346125 CCATTCCCCTCTGCGTGCTGTTGATCCTGCTGCTGCAACCCTTGGTCCGGTCTAATCTTATACTG
131 CCATTCCCC-CTGCGTGCTGTTGATCCTACTACTGCAACCCTCAGTCCGGTCTAATCTTAGACTG
* *
29346190 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAATAA
195 GGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAA
* * *
29346255 GCATGCAAGTGCTCAGCCGATCGTAGAGGCATAATGCGCAAGCCGGGGAT-AGCCCGACCCCCCT
260 GCATGCAAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCG-CCCCCCT
* * *
29346319 CTACGTGCTGCTGATCCTGCTGCCGGTCCTGCTACCACAACCCTCAGTTCAGCTG
324 CTACGTGCTACTGATCCTGCTGCCGGTCCTGATACCACAACCCTCAGTTCAGCCG
29346374 -TGGCTTAGACAT-GGAATGAACTCCGTATGC
1 AT--CTTAGAC-TGGGAATGAACTCCGTATGC
29346404 CTAGGTCAAC
Statistics
Matches: 356, Mismatches: 48, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
378 1 0.00
379 133 0.37
380 221 0.62
381 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (378 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAACGTGCAGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGAGAATCGGC
CCATTCCCCCTGCGTGCTGTTGATCCTACTACTGCAACCCTCAGTCCGGTCTAATCTTAGACTGG
GAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAAG
CATGCAAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGCCCCCCTCT
ACGTGCTACTGATCCTGCTGCCGGTCCTGATACCACAACCCTCAGTTCAGCCG
Found at i:29346625 original size:159 final size:159
Alignment explanation
Indices: 29346336--29346635 Score: 374
Period size: 159 Copynumber: 1.9 Consensus size: 159
29346326 CTGCTGATCC
* * * *
29346336 TGCTGCCGGTCCTGCTACCACAACCCTCAGTTCAGCTGTGGCTTAGACATGGAATGAACTCCGTA
1 TGCTGCCGGTCCTGCTACCACAACCCTCAATCCAGCTGTGGATTAGACATGGAATGAACTCCCTA
* * * * *
29346401 TGCCTAGGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGACAGAAAGGCATAATGCGCAA
66 TGCCCAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGACAGAAAGGCAGAATGCGCAA
29346466 GCCGGGGATCGACCCGATCCCCCTCTGCG
131 GCCGGGGATCGACCCGATCCCCCTCTGCG
* * * * *
29346495 TGCTGTCGGTCTTGCTACCACAACCCTTAATCCGGCTG-GGAATTAGCCATGGAATGAACTCCCT
1 TGCTGCCGGTCCTGCTACCACAACCCTCAATCCAGCTGTGG-ATTAGACATGGAATGAACTCCCT
** * *
29346559 ATGCCCAAG-CAAACCCATGAAAC-ATGCGTGCGGGCACTCAGTTGGTC-GAAGAGGTAGAATGC
65 ATGCCCAAGTC-AACCCATGAAACGA-GCGTGCGGGCACTCAGCCGGACAGAA-AGGCAGAATGC
29346621 GCAAGCCGGGGATCG
127 GCAAGCCGGGGATCG
29346636 GCTCGGTCTC
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
158 7 0.06
159 112 0.94
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
TGCTGCCGGTCCTGCTACCACAACCCTCAATCCAGCTGTGGATTAGACATGGAATGAACTCCCTA
TGCCCAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGACAGAAAGGCAGAATGCGCAA
GCCGGGGATCGACCCGATCCCCCTCTGCG
Found at i:29348097 original size:158 final size:158
Alignment explanation
Indices: 29347843--29348338 Score: 556
Period size: 159 Copynumber: 3.1 Consensus size: 158
29347833 ACTCCGTATG
*
29347843 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-ACGTGCGGGCGTTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGACGTGCGGGCGCTCA
* * ** *
29347906 GCCGGCCGAAGAGGTAGAATACGCAAGTTAGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATC
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
29347971 TTGCTGCCACAACCCTCAGTCTGGTCTGAT
130 TTGCTGCCACAACCCTC-GTCTGGTCTGAT
* * ** * * *
29348001 CATAGACTGGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGA-GTGCAGGCACTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGACGTGCGGGCGCTCAG
* * * * * *
29348065 CTGGCCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCTTCTACGTGCTGTCGGTC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGATC
* **
29348130 TTGCTGCCACAACCCTCGGTTTGG-CTGGGG
130 TTGCTGCCACAACCCTC-GTCTGGTCT-GAT
*
29348160 CTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACAAAACG-GACGTGCGGGCGCTC
1 CTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGACGTGCGGGCGCTC
** * * * **
29348222 AGCCGGTTTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTACCGA
64 AGCCGG-CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGA
** * *
29348287 TCTTGCTGCCGTAACCCTCGATCCGGTCCGAT
128 TCTTGCTGCCACAACCCTCG-TCTGGTCTGAT
29348319 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
29348339 TCGATGGTTA
Statistics
Matches: 276, Mismatches: 51, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 97 0.35
159 138 0.50
160 40 0.14
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGACGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCT
TGCTGCCACAACCCTCGTCTGGTCTGAT
Found at i:29349252 original size:26 final size:26
Alignment explanation
Indices: 29349201--29349253 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29349191 CCGATCCGAT
**
29349201 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29349227 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29349253 C
1 C
29349254 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29349672 original size:26 final size:26
Alignment explanation
Indices: 29349643--29349695 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29349633 CTGCTCCAAT
29349643 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29349669 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29349695 C
1 C
29349696 CCAAGACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29350177 original size:26 final size:26
Alignment explanation
Indices: 29350141--29350193 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29350131 CCGGTCCGAT
29350141 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29350167 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29350193 C
1 C
29350194 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29350522 original size:158 final size:160
Alignment explanation
Indices: 29350283--29350775 Score: 561
Period size: 158 Copynumber: 3.1 Consensus size: 160
29350273 CCCTAGACAT
**
29350283 GGAATGAACTCCGTATGCCTAAGCCAACGTACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * *
29350348 AGGCAGAATGCGCAAGCCAGGGA-CTGCCCTGGTCCCCCCTGCGTGCTGTCGATACTGCTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCAGCCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
*
29350412 AAGCCTCGGTCCAGTCT-GATCTTAGACTA
131 AACCCTCGGTCCAGTCTAGATCTTAGACTA
** * * * *
29350441 GGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCGTGCGGGCGTTGAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * *
29350506 AGGCATAATGCGCAAGCGGGGGATCAG-CCTGATCCCCCTCTGCATGCTGTC-AGTCCCGCTGCC
66 AGGCAGAATGCGCAAGCCGGGGATCAGCCCTGGTCCCCC-CTGCGTGCTGTCGA-TCCTGCTGCC
* * * **
29350569 ACAACCCTTGGT-CTGGCTAGGGCTTAGAC-A
129 ACAACCCTCGGTCCAGTCTAGATCTTAGACTA
* *
29350599 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGA
* * ** * * * * **
29350664 GAGGCAGAATACACAAGTTGGGGATCGGCCC-GGTCCCCCCTACGTGCTGTCGGTCCTACTGCTG
65 GAGGCAGAATGCGCAAGCCGGGGATCAGCCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCA
* * *
29350728 CAACCCTCGGTCCGGT-TCGATCTTAGACTG
130 CAACCCTCGGTCCAGTCTAGATCTTAGACTA
*
29350758 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
29350776 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 52, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
158 146 0.53
159 126 0.46
160 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (160 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAGAATGCGCAAGCCGGGGATCAGCCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCCAGTCTAGATCTTAGACTA
Found at i:29350790 original size:26 final size:26
Alignment explanation
Indices: 29350749--29350801 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29350739 CCGGTTCGAT
29350749 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29350775 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
29350801 C
1 C
29350802 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29351824 original size:26 final size:26
Alignment explanation
Indices: 29351788--29351840 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29351778 CTTGTCTGAT
*
29351788 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29351814 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29351840 C
1 C
29351841 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29351938 original size:184 final size:185
Alignment explanation
Indices: 29351629--29352193 Score: 617
Period size: 184 Copynumber: 3.0 Consensus size: 185
29351619 TCCGGTTGGG
*
29351629 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
*
29351693 GCCGGTCGGAGAGGTAGAATGCA-TAAGCCGGGGATC-AGCCC-AGTCCTCCCTGTGTGCTGTCG
65 GCCGGTCGGAGAGGTAGAATG-AGTAAGCCGGGGATCGA-CCCGA-TCCTCCCTGCGTGCTGTCG
*
29351755 ATCCTGCTATCGTAACCCTCGATCTTG-TCTGATCTTAGATTGGGAATGAACTCCATAT
127 ATCCTGCTATCGTAACCCTCGATCTTGATCTGATCTTAGACTGGGAATGAACTCCATAT
* * * * *
29351813 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
29351877 GCAGGCCAGAGAGGTAGAATGAGCAAGCCGGGGATCGACCCGATCC-CCTCTACGTGCTGTCGAT
65 GCCGGTCGGAGAGGTAGAATGAGTAAGCCGGGGATCGACCCGATCCTCC-CTGCGTGCTGTCGAT
* * * **
29351941 CCTACTACTAGTCCTACTACCGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCA
129 -C--CTGCTA-TCGTA--ACC-C-TCGATC--TT-GATCTGATCTTAGACTGGGAATGAACTCCA
29352006 TAT
183 TAT
* * * * *
29352009 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAACGAGCATGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
29352074 CCGGTCGGAGAGGCA-AATGCGTAAGTCGGGGACCGACCCGATCCTCCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGTAGAATGAGTAAGCCGGGGATCGACCCGATCCTCCCTGCGTGCTGTCGATCC
** * ** *
29352138 TGCTGCCGCAACCCTCGATC-TGATCCAATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTATCGTAACCCTCGATCTTGATCTGATCTTAGACTGGGAATGAACTCCATAT
29352192 GC
1 GC
29352194 CTAAGTCAAA
Statistics
Matches: 313, Mismatches: 48, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
183 36 0.12
184 104 0.33
185 4 0.01
187 8 0.03
188 5 0.02
189 3 0.01
190 3 0.01
191 3 0.01
192 7 0.02
194 3 0.01
195 40 0.13
196 96 0.31
197 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGTAGAATGAGTAAGCCGGGGATCGACCCGATCCTCCCTGCGTGCTGTCGATCC
TGCTATCGTAACCCTCGATCTTGATCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:29352402 original size:159 final size:157
Alignment explanation
Indices: 29352009--29352389 Score: 426
Period size: 159 Copynumber: 2.4 Consensus size: 157
29351999 AACTCCATAT
* * *
29352009 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAACGAGCATGCA-GGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATG-AGGGCGCTCA
*
29352073 GCCGGTCGGAGAGGCAAATGCGTAAGTCGGGGACCGACCCGATCCTCCCTGCGTGCTGTCGATCC
65 GCCGGTCGGAGAGGCAAATGCGTAAGTCGGGGACCGACCCGACCCTCCCTGCGTGCTGTCGATCC
* * * *
29352138 TGCTGCCGCAACCCTCGATCTGATCCAA
130 CGCTGCCACAACCCTAGATCCGATCCAA
* * * ** *
29352166 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCATTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCA
* * * * *
29352230 GCCGGTCGGAGAGGCATATTGCGTAAGTCGGGGATCGACCCAGACCCTCGCTGCGTGTTGTCGGT
65 GCCGGTCGGAGAGGCA-AATGCGTAAGTCGGGGACCGACCC-GACCCTCCCTGCGTGCTGTCGAT
* * ****
29352295 CCCGTTGGCACAACCCTTAG-TCCGATTGGG
128 CCCGCTGCCACAACCC-TAGATCCGATCCAA
* * * * *
29352325 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGAGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAG
29352390 TCGATCGAAG
Statistics
Matches: 182, Mismatches: 36, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
156 1 0.01
157 68 0.37
158 22 0.12
159 88 0.48
160 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAG
CCGGTCGGAGAGGCAAATGCGTAAGTCGGGGACCGACCCGACCCTCCCTGCGTGCTGTCGATCCC
GCTGCCACAACCCTAGATCCGATCCAA
Found at i:29352525 original size:26 final size:26
Alignment explanation
Indices: 29352484--29352536 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29352474 CTGGTCTAAT
*
29352484 CTTAGACTGGGAATGAATTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
29352510 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
29352536 C
1 C
29352537 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:29359661 original size:12 final size:12
Alignment explanation
Indices: 29359644--29359672 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
29359634 CCCTCCTGCG
29359644 TGCTGTCGATCC
1 TGCTGTCGATCC
29359656 TGCTGTCGATCC
1 TGCTGTCGATCC
29359668 TGCTG
1 TGCTG
29359673 CTGGTCTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.31, G:0.28, T:0.34
Consensus pattern (12 bp):
TGCTGTCGATCC
Found at i:29359738 original size:26 final size:26
Alignment explanation
Indices: 29359709--29359761 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29359699 CCGATCTGAT
*
29359709 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAAACCAGGAATGAACTCCGTATG
* *
29359735 CTTAAACTAGGGATGAACTCCGTATG
1 CTTAAACCAGGAATGAACTCCGTATG
29359761 C
1 C
29359762 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACCAGGAATGAACTCCGTATG
Found at i:29360812 original size:26 final size:26
Alignment explanation
Indices: 29360774--29360826 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29360764 GGCTCAAAAT
29360774 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
29360800 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
29360826 C
1 C
29360827 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29361214 original size:159 final size:158
Alignment explanation
Indices: 29360799--29361244 Score: 463
Period size: 159 Copynumber: 2.8 Consensus size: 158
29360789 AACTCCATAT
* *
29360799 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
29360864 CCGG-TCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCCCCCTGCGTGCTATCAATC
66 CCGGCT-GGAGAGGCAGAATTCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCAATC
** *
29360928 TTGCTACCACAACCCTCAGTCCGGTCTGA
130 CCGCTACCACAACCCTCACTCCGGTCTGA
* * * *
29360957 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * * *
29361021 GCCGGCCGAAGAGGCATAATGT-GCAAGCTTGGGATTAGCCTGGTCCCCCTCTGCGTGCTGCCAG
65 GCCGGCTGGAGAGGCAGAAT-TCGCAAGCCAGGGATCAGCCCGGTCCCCC-CTGCGTGCTGCCAA
* *
29361085 TCCCGCTGCCACAACCCTCGACT-CGG-CTGGG
128 TCCCGCTACCACAACCCTC-ACTCCGGTCT-GA
* * * * * *
29361116 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
29361181 CCGGCTGGAGTGGCAGAATTCGTAAGCCAGGGATCAACCCAGT-CCCCCTGCGTGCTGCCGATCC
66 CCGGCTGGAGAGGCAGAATTCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCAATCC
29361245 TGCTGTCGTA
Statistics
Matches: 232, Mismatches: 48, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 16 0.07
158 99 0.43
159 114 0.49
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAATTCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCAATCC
CGCTACCACAACCCTCACTCCGGTCTGA
Found at i:29361315 original size:26 final size:26
Alignment explanation
Indices: 29361276--29361325 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
29361266 AGTTCGATCT
29361276 TAGACTGGAAATGAACTCCGTATGCA
1 TAGACTGGAAATGAACTCCGTATGCA
* *
29361302 TAGACTGGAGATGAACTCTGTATG
1 TAGACTGGAAATGAACTCCGTATG
29361326 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCA
Found at i:29362029 original size:186 final size:184
Alignment explanation
Indices: 29361638--29362037 Score: 507
Period size: 186 Copynumber: 2.2 Consensus size: 184
29361628 GGTTCGATCT
* * *
29361638 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAACGAACTTCGTATGCCTAAGCCAA
* * *
29361703 CCCACCAAATGAACGAACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTCAATCGGGGACCGA
66 CCCACCAAACGAACGAACGGGCGCTCAGCCGGCCAGAAAGGCAGAATGCGTCAATCGGGAACCGA
* *
29361768 CCCGGTCCCCCCTACGTGCTATCGATCCTGCTACCGAAACCCTCGGTCCGGTTC
131 CCCGGTCCCCCCTACGTGCTATCGATCCTACTACCGAAACCCTCGATCCGGTTC
* * * *
29361822 GATCTTAGACTTGGTATGAACTCTGTATGCTTAGACATGTAACGAAC-TCTGTATGCCTAAGCCA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAACGAACTTC-GTATGCCTAAGCCA
* * ** * *
29361886 ACCCACGAAACGAGCGTGCGGGCCGCTCAGCCGGTCGGAAAGGCAGAATGCGT-AAGCTCGGGAA
65 ACCCACCAAACGAACGAACGGG-CGCTCAGCCGGCCAGAAAGGCAGAATGCGTCAA--TCGGGAA
* * * * * * * *
29361950 CCGACTCGGTCCCCCTTGCGTGCTGTCGATCCTACTGCCGCAGCCCTCGATCTGGTTC
127 CCGACCCGGTCCCCCCTACGTGCTATCGATCCTACTACCGAAACCCTCGATCCGGTTC
*
29362008 GATCTTAAACTAGGAATGAACTCCGTATGC
1 GATCTTAGACTAGGAATGAACTCCGTATGC
29362038 CTAAGTCAAC
Statistics
Matches: 183, Mismatches: 29, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.01
184 74 0.40
185 27 0.15
186 80 0.44
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAACGAACTTCGTATGCCTAAGCCAA
CCCACCAAACGAACGAACGGGCGCTCAGCCGGCCAGAAAGGCAGAATGCGTCAATCGGGAACCGA
CCCGGTCCCCCCTACGTGCTATCGATCCTACTACCGAAACCCTCGATCCGGTTC
Found at i:29362186 original size:160 final size:158
Alignment explanation
Indices: 29361851--29362299 Score: 490
Period size: 160 Copynumber: 2.8 Consensus size: 158
29361841 ACTCTGTATG
* * * *
29361851 CTTAGACATGTAACGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-CGCTCAG
* * * * *
29361916 CCGGTCGGAAAGGCAGAATGCGTAAGCTCGGGAACCGACTCGGTCCCCCTTGCGTGCTGTCGATC
65 TCGGTCGGAGAGGCAGAATGCGCAAG-TCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATC
* * *
29361981 CTACTGCCGCAGCCCTCGATCTGGTTCGAT
129 CCACTGCCACAACCCTCGATCTGGTTCGAT
* * * * * *
29362011 CTTAAAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * * * *
29362075 TCGACCGGAGAGGCATAATGTGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGCGTGTTGTCGGTC
65 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCCCCCT-TGCGTGCTGTCGATC
* * * * *
29362140 CCGCTGCCACAACCCTCGGTTTCGGTTGGGGT
129 CCACTGCCACAACCCTCGATCT-GGTT-CGAT
*
29362172 -TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
* * * * *
29362236 CGGTCGGAGAGGCAGAATGCGCATGCCGGGGATCGACCCGATCCGCCC-TGTGTGCTGTCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCC-CCCTTGCGTGCTGTCGATCC
29362300 TGCTACCGCA
Statistics
Matches: 234, Mismatches: 49, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
158 20 0.09
159 67 0.29
160 141 0.60
161 6 0.03
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATCCC
ACTGCCACAACCCTCGATCTGGTTCGAT
Found at i:29362360 original size:26 final size:26
Alignment explanation
Indices: 29362331--29362386 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
29362321 GGTATGATCT
29362331 TATGCTTAGACTGGGGATGAACTCTG
1 TATGCTTAGACTGGGGATGAACTCTG
29362357 TATGCTTAGACTGGGGATGAACTCTG
1 TATGCTTAGACTGGGGATGAACTCTG
29362383 TATG
1 TATG
29362387 ACTAAGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.32
Consensus pattern (26 bp):
TATGCTTAGACTGGGGATGAACTCTG
Found at i:29363383 original size:159 final size:157
Alignment explanation
Indices: 29363023--29363732 Score: 530
Period size: 158 Copynumber: 4.4 Consensus size: 157
29363013 GGCTCAAAAT
** * *
29363023 CTTAGACTTGGAATGAACTTTGTATGCCTAAGCCATCCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
29363088 CGATCGAAGAGGCAGAATACGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
65 CGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCCC
* * * * *
29363153 GCTGCCGCAACCCTCATTCTGATCT-GAT
130 GCTGCCACAACCCTCAGTCCG-GCTGGAG
* * * * * *
29363181 CTTAGACTGGGAATGAGCTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
29363246 CGATCGAAGAGGCATAATGCGCAAGTCGGTGATCGGCCCAGTCCCCCTCTGCGTGCTACCGGTCC
65 CGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCC-CTGCGTGCTACCGATCC
* *
29363311 CGCTGCCACAACCCTCGGTCCGGCTGGGG
129 CGCTGCCACAACCCTCAGTCCGGCTGGAG
* * * *
29363340 CTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGTAG-TCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-CGCTCAG
* * * * * * **
29363404 CCGGTCGGAGAGGCAGAATGCGTAAG-CTGGGGATCGACCTAGTCCCCCCTACGTGCTGTCGATC
64 CCGATCGAAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATC
** ** * * * * *
29363468 TTGCTATCGCAACCCTCAGT-CTGATCCGAT
128 CCGCTGCCACAACCCTCAGTCCGGCT-GGAG
* * * * *** * * *
29363498 CTTGGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCTTAAAACGAGTGTGCGGGCTCTTAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * ** * * *
29363563 CGGCCGAAGAGGCATAATGTACAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCC
65 CGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCC-CTGCGTGCTACCGA---
* *
29363628 TGCTGCCGATCCTGCTGTCACAACCCTCGGTCCGGCTGGGG
126 T-C--CCG---CTGC---CACAACCCTCAGTCCGGCTGGAG
* ** *
29363669 CTTAGACATGGAATGAACTCCATATATCTAAGCCAACCCACGAAAC-ATGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAG
29363733 TCGGCCGGAG
Statistics
Matches: 416, Mismatches: 110, Indels: 39
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.01
158 208 0.50
159 133 0.32
160 2 0.00
162 1 0.00
163 1 0.00
165 1 0.00
168 2 0.00
170 1 0.00
171 58 0.14
172 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCCCG
CTGCCACAACCCTCAGTCCGGCTGGAG
Found at i:29363564 original size:158 final size:157
Alignment explanation
Indices: 29363021--29363635 Score: 547
Period size: 158 Copynumber: 3.9 Consensus size: 157
29363011 GTGGCTCAAA
* ** * * *
29363021 ATCTTAGACTTGGAATGAACTTTGTATGCCTAAGCCATCCCACGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
29363086 ACCGATCGAAGAGGCAGAATACGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
66 GCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGCCT-AGTCCCCCCTGCGTGCTGTCGATC
* *
29363151 CTGCTGCCGCAACCCTCATTCTGATCTG
130 CTGCTGCCGCAACCCTCAGTCTGATCCG
* * * *
29363179 ATCTTAGACTGGGAATGAGCTCCGTATG-CATAAGTCAACCCACGAAATGAGTGTGCGGGCGCTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCA-AAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * ** *
29363243 AGCCGATCGAAGAGGCATAATGCGCAAGTCGGTGATCGGCCCAGTCCCCCTCTGCGTGCTACCGG
65 AGCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATC-GCCTAGTCCCCC-CTGCGTGCTGTCGA
* * * * * *
29363308 TCCCGCTGCCACAACCCTCGGTCCG-GCTGG
128 TCCTGCTGCCGCAACCCTCAGTCTGATC-CG
** * * * * * *
29363338 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGTAG-T
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGG-CGCT
* * * *
29363401 CAGCCGGTCGGAGAGGCAGAATGCGTAAG-CTGGGGATCGACCTAGTCCCCCCTACGTGCTGTCG
64 CAGCCGATCGAAGAGGCAGAATGCGCAAGTC-GGGGATCG-CCTAGTCCCCCCTGCGTGCTGTCG
* **
29363465 ATCTTGCTATCGCAACCCTCAGTCTGATCCG
127 ATCCTGCTGCCGCAACCCTCAGTCTGATCCG
* * *** * * *
29363496 ATCTTGGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCTTAAAACGAGTGTGCGGGCTCTTA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * ** * ** **
29363561 GCCGGCCGAAGAGGCATAATGTACAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGAT
66 GCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATC-GCCTAGTCCCCC-CTGCGTGCTGTCGAT
29363626 CCTGCTGCCG
129 CCTGCTGCCG
29363636 ATCCTGCTGT
Statistics
Matches: 354, Mismatches: 88, Indels: 29
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 207 0.58
159 142 0.40
160 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGCCTAGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCTGATCCG
Found at i:29363793 original size:329 final size:316
Alignment explanation
Indices: 29363023--29363801 Score: 891
Period size: 317 Copynumber: 2.4 Consensus size: 316
29363013 GGCTCAAAAT
* *** * * *
29363023 CTTAGACTTGGAATGAACTTTGTATGCCTAAGCCATCCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGTGCTCAGC
* * * * *
29363088 CGATCGAAGAGGCAGAATACGCAAGTCGGGGATCGG-CTCGGTCCCCCCTGCGTGCTGTCGATCC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GATCCCCCCTGCGTGCTGTCGATCC
* * * *
29363152 TGCTGCCGCAACCCTCATTCTGATCTGATCTTAGACTGGGAATGAGCTCCGTATGCATAAGTCAA
129 TGCTACCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * * * * * *
29363217 CCCACGAAATGAGTGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGTCGGTGATCGG
194 CCCACAAAACGAGTGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAG
29363282 CCCAGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGG
259 CCCAGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGG
* * *
29363340 CTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGTAG-TCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGT-GCTCAG
* * * *
29363404 CCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCT-AGTCCCCCCTACGTGCTGTCGATC
64 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGA-TCCCCCCTGCGTGCTGTCGATC
* * * *
29363468 TTGCTATCGCAACCCTCAGTCTGATCCGATCTTGGACTGGGGATGAACTCCGTATGCCA-AAGTC
128 CTGCTACCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG-CATAAGTC
** * * * *
29363532 AACCCTTAAAACGAGTGTGCGGGCTCTTAGCCGGCCGAAGAGGCATAATGTACAAGCCGGGGATC
192 AACCCACAAAACGAGTGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATC
* *
29363597 AGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGATCCTGCTGTCACAACCCTCGGTCCG
257 AGCCCAGTCCCCCTCTGCGTGCTACCG-----G-T--C---CC-GCTGCCACAACCCTCGGTCCG
29363662 GCTGGGG
310 GCTGGGG
** *
29363669 CTTAGACATGGAATGAACTCCATATATCTAAGCCAACCCACGAAACATGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACA-GCGTGCGGGTGCTCAGC
* * * * * **
29363734 CGGCCGGAGAGGTAGAATGTGCACGCCGAGGATCGGCCTGATCCCCCCTGTATGCTGTCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCT
29363799 GCT
130 GCT
29363802 GCTGGTCCTG
Statistics
Matches: 384, Mismatches: 59, Indels: 26
0.82 0.13 0.06
Matches are distributed among these distances:
317 235 0.61
318 5 0.01
322 1 0.00
323 1 0.00
325 1 0.00
328 3 0.01
329 137 0.36
330 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (316 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGCGTGCGGGTGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCTG
CTACCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
CACAAAACGAGTGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCC
CAGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGG
Found at i:29363868 original size:26 final size:26
Alignment explanation
Indices: 29363839--29363891 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29363829 CCAGTCTGAT
29363839 CTTAGAC-TAGGAATGAACTCTGGATG
1 CTTAGACAT-GGAATGAACTCTGGATG
*
29363865 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGGATG
29363891 C
1 C
29363892 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGGATG
Found at i:29364292 original size:159 final size:157
Alignment explanation
Indices: 29363865--29364294 Score: 443
Period size: 159 Copynumber: 2.7 Consensus size: 157
29363855 ACTCTGGATG
* * * * *
29363865 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAGC
* **
29363930 CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCTT
66 CAGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
** *
29363995 GCTGCTGCAACCCTCGGTCCGGTCCAAT
130 GCTGCCACAACCCTCGGTCCGGACCAAT
* * ** * *
29364023 CTTAGAC-TGGGAATTAACTTCGTAAACCTAA-CTCAACCCATGAAATGAGCATGCGGGCGTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAATGAGCATGCGGGCGCTCA
* * * * * * * *
29364086 GCCGGTCGAAAAGGCATAATGCGCAAGCCGAAGATCAGCCCGATCCCCCTCTGCGTGTTGTCGGT
64 GCCAGTCGGAGAGGCAGAATGCGCAAGCCG-GGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * *
29364151 CCCGCTGCCACAACCCTCGGTTC-GACTATGT
127 CCCGCTGCCACAACCCTCGGTCCGGACCA-AT
* * * * *
29364182 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGACACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAGC
* * * *
29364247 AAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCC
66 CAGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCC
29364295 CTGTCCTGCT
Statistics
Matches: 216, Mismatches: 48, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 93 0.43
159 117 0.54
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAGC
CAGTCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCCG
CTGCCACAACCCTCGGTCCGGACCAAT
Found at i:29364513 original size:26 final size:26
Alignment explanation
Indices: 29364475--29364527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29364465 GGCTCAAAAT
*
29364475 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29364501 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29364527 C
1 C
29364528 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29364799 original size:159 final size:157
Alignment explanation
Indices: 29364501--29364997 Score: 412
Period size: 159 Copynumber: 3.1 Consensus size: 157
29364491 ACTCCGTATG
* * **
29364501 CTTAGACAT-GGAATGAACTCC-ATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGCTAGGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCA
* ** * * * * * *
29364564 GCCGGTCAGAGAGGTAGAATGCGCAAGCC-AGGGACCGACCCGATCCCCCCATGCGTGCTGTCGA
65 ACCGACCAGAGAGGCAGAAAGCGCAAGCCGA-GGATC-ACCCGGTCCCCCC-GGCGTGCTGCCGA
*** *
29364628 TCTTGCTACCACAACCCTCAGTCCGATCCAAT
127 TCCCACTGCCACAACCCTCAGTCCG-TCCAAT
* * * * * *
29364660 CTTAGATTGGGAATGAACTCCGC-AGGCTTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAA
1 CTTAGAATGGGAATGAACTCCGCTAGGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAA
* * * * * *
29364724 CCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAACCTGGTCCCCCTCGGCGTGCTGTCGGTC
66 CCGACCAGAGAGGCAGAAAGCGCAAGCCGAGGATC-ACCCGGTCCCCC-CGGCGTGCTGCCGATC
* * * * **
29364789 CCACTGCCACAACCCTCGGTCTGGCTAGGG
129 CCACTGCCACAACCCTCAGTCCGTCCA-AT
* * ** *
29364819 CATAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGCTAGGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCA
* * * * * *
29364882 GCCGGCCAGAGAGGTAGAAAGCGCAAGTCGAGGATCGCCCGGTCCCCCCTGCGTGCTGCCGATCC
65 ACCGACCAGAGAGGCAGAAAGCGCAAGCCGAGGATCACCCGGTCCCCCCGGCGTGCTGCCGATCC
** *
29364947 TGCTGTCACAACCCTCAGTCCGGTCCAAT
130 CACTGCCACAACCCTCAGTCC-GTCCAAT
*
29364976 CTTAGACTGGGAATGAACTCCG
1 CTTAGAATGGGAATGAACTCCG
29364998 TATGCTTAGA
Statistics
Matches: 262, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 47 0.18
158 17 0.06
159 194 0.74
160 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGCTAGGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAA
CCGACCAGAGAGGCAGAAAGCGCAAGCCGAGGATCACCCGGTCCCCCCGGCGTGCTGCCGATCCC
ACTGCCACAACCCTCAGTCCGTCCAAT
Found at i:29366934 original size:158 final size:156
Alignment explanation
Indices: 29366455--29366926 Score: 482
Period size: 158 Copynumber: 3.0 Consensus size: 156
29366445 ATGAACTTTA
* * * *
29366455 TATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGATCAGCCGACTGGAGAGGCAGAATGTGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGAC-GGAGAGGCAGAATGCGC
* * * * * *
29366520 AAGCTGAGGATCGACCCGATCCCCTCCTGCGTGCTGTCGATCTTGCTACCGCAACCCTCGGTCCG
65 AAGCTGGGGATCGGCCCGATCCCC-CCTACGTGTTGTCGATCCTGCTGCCGCAACCCTCGGTCCG
* *
29366585 GTCTGATCTTAGACTAGGAATAAACTCCG
129 ATCTGATCTTAGA-TAGGAATGAACTCCG
* * ** * * * *
29366614 TATGCTTAAGTCAACCCACAAAATGAGCGT-CTGGGCGCTGAGCCTGCCGGAGAGGCATAATGCG
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGCGCTCAG-CTGACGGAGAGGCAGAATGCG
* * * * *
29366678 CAAGCTGGGGATCAGCCCGGTCCCCCCTACATGTTGTCGAT-CTCGCTGCCACAACCCTTGGTCC
64 CAAGCTGGGGATCGGCCCGATCCCCCCTACGTGTTGTCGATCCT-GCTGCCGCAACCCTCGGTCC
* ** * *
29366742 -AGCTGGGGCTTAGACATGGAATGAACTCCC
128 GATCT-GATCTTAGATA-GGAATGAACTCCG
* * * * * *
29366772 TATGCCTAAGCCAACCCATGGAACGGGCGTGCGGGTGCTCAGCTAGTCGAAGAGGCAGAATGCAC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT-GACGGAGAGGCAGAATGCGC
* * *
29366837 AAGCTGGGGATTGGCCCGATCGCCCCTACGTGTTGCCGATCCTGCTGCCGCAACCCTCGGTCCGA
65 AAGCTGGGGATCGGCCCGATCCCCCCTACGTGTTGTCGATCCTGCTGCCGCAACCCTCGGTCCGA
29366902 TCTGATCTTAGATTAGGAATGAACT
130 TCTGATCTTAGA-TAGGAATGAACT
29366927 TTGTATGCTT
Statistics
Matches: 248, Mismatches: 55, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 165 0.67
159 74 0.30
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGACGGAGAGGCAGAATGCGCA
AGCTGGGGATCGGCCCGATCCCCCCTACGTGTTGTCGATCCTGCTGCCGCAACCCTCGGTCCGAT
CTGATCTTAGATAGGAATGAACTCCG
Found at i:29366958 original size:26 final size:26
Alignment explanation
Indices: 29366908--29366960 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29366898 CCGATCTGAT
**
29366908 CTTAGATTAGGAATGAACTTTGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
* *
29366934 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
29366960 C
1 C
29366961 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCGTATG
Found at i:29367386 original size:158 final size:155
Alignment explanation
Indices: 29367118--29367612 Score: 392
Period size: 158 Copynumber: 3.1 Consensus size: 155
29367108 CTGGCTAGGG
* * * * * * * *
29367118 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCAGGAAACGAGCATACGGGCACTCAG
1 CTTAGAC-TGGGAATGAACT-CTTATGCATAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAA
* * * * **
29367182 CC-AGTCGGAGAGGTAGAATAAGCAAGCCGGGGATCGGCCCGGTCCCCCGTGCATGCTGTCAATC
64 CCGA-CCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-TGCATG-TGTCAATC
* *
29367246 CTGCTACTGCAACCCTCGGTCTGGTTCGAT
126 CTGCTACTGCAACCCTCGGTCCGGTCCGAT
*
29367276 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCACTGAAC
1 CTTAGACTGGGAATGAACTCT-TATGCATAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAAC
* * * *
29367341 CGACCGAAAAGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCCT-CTATGTGCTACCAATC
65 CGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGC-ATGTG-T--CAATC
* * ** * **
29367405 CCGCTGCCACAACCCTCGATCCGG-CCAGGG
126 CTGCTACTGCAACCCTCGGTCCGGTCC-GAT
* * * * *
29367435 CTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCACTTAG
1 CTTAGAC-TGGGAATGAACT-CTTATGCATAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAA
* * * * * * * *
29367499 CTGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTG--TGTGTTGCTGAT
64 CCGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCTGCATGTG-T-C-AAT
* * *
29367562 CCTGCTATTGTAACCCTCGGTCCGATCCGAT
125 CCTGCTACTGCAACCCTCGGTCCGGTCCGAT
29367593 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
29367613 CATATGCTTA
Statistics
Matches: 265, Mismatches: 57, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 10 0.04
158 131 0.49
159 112 0.42
160 9 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCTTATGCATAAGCCAACCCATGAAACGAGCGTGCAGGCACTGAACC
GACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCATGTGTCAATCCTGCT
ACTGCAACCCTCGGTCCGGTCCGAT
Found at i:29367450 original size:685 final size:675
Alignment explanation
Indices: 29365734--29368230 Score: 2190
Period size: 685 Copynumber: 3.6 Consensus size: 675
29365724 AACTCCGTAT
* * * *** *
29365734 GCTTGGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGTTTAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
29365799 CCGACCGGAGAGGTAGAATAAGCAAGCTGGGGTTCGGCCCGATGCCCCCCTACGTGCTGTCGATC
66 CCG-TCGGAGAGGCAGAATAAGCAAGCCGGGGATCGGCCCGAT-CCCCCCTGCATGCTGTCGATC
* * * * *
29365864 CTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTACATTGGGAATGAACTCCGTATACATAAGTCA
129 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * *
29365929 ACCCACGAAACAAGTGTGCGGGTACTG-ACCCAGTCGAAGAGGCATAATGCGCAAGCCGGGGATC
194 ACCCACGAAACGAGCGTGCGGGCACTGAACCGA-CCGAAGAGGCATAATGCGCAAGCCGGGGATC
* * * *
29365993 GACCCGGTCCCCCTCTACGTGCTGCCAGTTCCACTGCCACAACCCTTGGTCTGGCTAGGGCTTAG
258 GACCCGGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCACAACCCTTGGTCCGGCTAGGGCTTAG
* ** * * *
29366058 ACATGGAATGAACTCCCTATGCCTAAGCGAACCCACAAAAAGGGCGTGGGGGCGGTCAGCCAGCC
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCAGCTAGCC
* * * *
29366123 GGAGAGGCAGAATGCACAAGCCGAGGATCGACCAGGTCCCCCTACGTGCTACAGATCCTGCTGCC
388 GGAGAGGCAGAATGCACAAGCCGGGGATCGGCCAGGTCCCCCTACGTGTTGCAGATCCTGCTGCC
* * * *
29366188 GCAACCCTCGATCC-AGTCCGATCATAGATTGGCAATGAACTCCGTATGCTTAGATCGAGGATGA
453 GCAACCCTCGGTCCGA-TCCGATCTTAGATTGG-AATGAACTCCGTATGCTTAGATTGGGGATGA
* * *
29366252 ACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGATGCTCA--GTC-GGCCGA---AGA
516 ACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGTGCTCAGCGTCAGGCCGATGGAGA
* * * * * * *
29366311 GGCATAATGCGTAAGCCGAAGATCAATCCAGTTGCCCC-CTGCATGCTGTCGATCCTACTGCTGG
581 GGCATAATGCGTAAGCCGAGGATC-AGCCAGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCGG
** * *
29366375 TCCTGCTATCGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCTG
645 TCCTGCTGCCACAA-CC-C--T-C-G---G-TC-T-GGCT----A-G------G
* *
29366429 TAAGCTTAGACATGGAATGAACTTTATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGA-
1 ---GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC-AC
* ** * * * *
29366493 TCAGCCGACTGGAGAGGCAGAATGTGCAAGCTGAGGATCGACCCGATCCCCTCCTGCGTGCTGTC
62 TCAGCCGTC-GGAGAGGCAGAATAAGCAAGCCGGGGATCGGCCCGATCCCC-CCTGCATGCTGTC
* * * *
29366558 GATCTTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCTTAA
125 GATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAA
* * * * * *
29366623 GTCAACCCACAAAATGAGCGT-CTGGGCGCTGAGCCTG-CCGGAGAGGCATAATGCGCAAGCTGG
190 GTCAACCCACGAAACGAGCGTGC-GGGCACTGAACC-GACCGAAGAGGCATAATGCGCAAGCCGG
* * * * * * *
29366686 GGATC-AGCCCGGTCCCCC-CTACATGTTGTCGATCTCGCTGCCACAACCCTTGGTCCAGCTGGG
253 GGATCGA-CCCGGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCACAACCCTTGGTCCGGCTAGG
* * *
29366749 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGCGGGTGCTCAG
317 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCAG
* * * * * * *
29366814 CTAGTCGAAGAGGCAGAATGCACAAGCTGGGGATTGGCCCGATCGCCCCTACGTGTTGCCGATCC
382 CTAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCAGGTC-CCCCTACGTGTTGCAGATCC
* **
29366879 TGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGATTAGGAATGAACTTTGTATGCTTAGATTGG
446 TGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGATT-GGAATGAACTCCGTATGCTTAGATTGG
* * *
29366944 GGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCTGTCGGAGA
510 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGTGCTCAG-C-GTC----A
* *
29367009 GGCCGATTGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCAA
569 GGCCGA-TGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTGTCGA
* *
29367074 TCCCACTACCGGTCCTACTGCCACAACCCTCGGTCTGGCTAGG
633 TCCCACTGCCGGTCCTGCTGCCACAACCCTCGGTCTGGCTAGG
* * * *
29367117 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAGGAAACGAGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * *
29367182 CCAGTCGGAGAGGTAGAATAAGCAAGCCGGGGATCGGCCCGGTCCCCCGTGCATGCTGTCAATCC
66 CC-GTCGGAGAGGCAGAATAAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
* * *
29367247 TGCTACTGCAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
130 TGCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * *
29367311 ACCCATGAAACGAGCGTGCAGGCACTGAACCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCG
194 ACCCACGAAACGAGCGTGCGGGCACTGAACCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCG
* * * * * *
29367376 ACCCGATCCCCCTCTATGTGCTACCAATCCCGCTGCCACAACCCTCGATCCGGCCAGGGCTTAGA
259 ACCCGGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCACAACCCTTGGTCCGGCTAGGGCTTAGA
* * * * * * *
29367441 CATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCACTTAGCTGGCTG
324 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCAGCTAGCCG
** * ** * ***
29367506 GAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTGTGTGTTGCTGATCCTGCTATT
389 GAGAGGCAGAATGCACAAGCCGGGGATCGGCCAGGT-CCCCCTACGTGTTGCAGATCCTGCTGCC
* * * *
29367571 GTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
453 GCAACCCTCGGTCCGATCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGATTGGGGATGAA
* * * * *
29367636 CTCCGTATGCCTAAGTCAACCCACGAAATGACCGTATGAGCGCTCAGC--CA-GTC---GGAGAG
517 CTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGTGCTCAGCGTCAGGCCGATGGAGAG
* * * * * ** * *
29367695 GCATAATGCGTAAGCCGGGGATCAGCAAGGTCCCCCTTTCCGTGCTGTCGATCTCGTTGTCAGTC
582 GCATAATGCGTAAGCCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCGGTC
* * * * *
29367760 TTGGTGCCACAACCCTCGGTCCGGTTGGG
647 CTGCTGCCACAACCCTCGGTCTGGCTAGG
* * * *
29367789 GATTAGACATCGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * ** * * * * * * *
29367854 CTAGTCAGAGATGCAGAATGCGTAAACCGGGAATCAGTCTGGTCCCCCCTGCATGCTGTCGATCC
66 C-CGTCGGAGAGGCAGAATAAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
* * *
29367919 TGCTGCTGGTTCGGCTACCACAACCATCAGTCCGATCTGATCTTAGACAT-GGAATGAACTCCGT
130 TGCTAC-----C-GC-A--AC--CC-TCGGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCCGT
* * * ** * * * *
29367983 ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAATCGGCC-AGAGAGGCAAAATGCGC
182 ATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAACCGACCGA-AGAGGCATAATGCGC
* * * * ** * * * * *
29368047 AAGCTGAGGATCGACCCAGTCCCTCCT-T-CGTTCTATCGATCCTGCTACCGTC-ACCCTTGATC
246 AAGCCGGGGATCGACCCGGTCCC-CCTCTACGTGCTGCCAATCCCGCTGCC-ACAACCCTTGGTC
** * * * * * *
29368109 CGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGC
309 CGG-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGC
* * * * * ** * * *
29368172 GGGCACTGA-CTCGACCGGAGAGGCATAATGCGCAAGGTGGGGATCAGCCCGATCCCCCT
372 GGGCGCTCAGCTAG-CCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCAGGTCCCCCT
29368231 CTGCGTGCTG
Statistics
Matches: 1478, Mismatches: 267, Indels: 124
0.79 0.14 0.07
Matches are distributed among these distances:
672 194 0.13
676 2 0.00
677 1 0.00
678 2 0.00
679 1 0.00
681 3 0.00
682 10 0.01
683 118 0.08
684 235 0.16
685 342 0.23
686 4 0.00
688 1 0.00
694 1 0.00
695 1 0.00
697 133 0.09
698 337 0.23
699 8 0.01
700 1 0.00
701 2 0.00
702 4 0.00
705 1 0.00
706 1 0.00
707 7 0.00
709 1 0.00
710 11 0.01
711 57 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (675 bp):
GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGTCGGAGAGGCAGAATAAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGCGTGCGGGCACTGAACCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGAC
CCGGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCAGCTAGCCGGA
GAGGCAGAATGCACAAGCCGGGGATCGGCCAGGTCCCCCTACGTGTTGCAGATCCTGCTGCCGCA
ACCCTCGGTCCGATCCGATCTTAGATTGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCC
GTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGTGCTCAGCGTCAGGCCGATGGAGAGGCAT
AATGCGTAAGCCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCGGTCCTGC
TGCCACAACCCTCGGTCTGGCTAGG
Found at i:29367530 original size:159 final size:158
Alignment explanation
Indices: 29367091--29367534 Score: 443
Period size: 158 Copynumber: 2.8 Consensus size: 158
29367081 ACCGGTCCTA
* *
29367091 CTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGGCCAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
* * * * * * * *
29367156 CAGGAAACGAGCATACGGGCACTCAGCCAG-TCGGAGAGGTAGAATAAGCAAGCCGGGGATCGGC
66 CATGAAACGAGCGTGCAGGCACTCAGCCGGCT-GGAGAGGCAGAATGAGCAAGCCGGGGATCGAC
* *
29367220 CCGGTCCCCCGTGCATGCTGTCAATCCTG
130 CCGATCCCCCGTGCATGCTGTCAATCCCG
* ** * ** * *
29367249 CTACTGCAACCCTCGGTCTGGTTC-GATCTTAGAC-TGGGAATGAACT-CTGTATGCATAAGTCA
1 CTGCCACAACCCTCGGTCTGG-CCAGGGCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCA
* * * * * * * *
29367311 ACCCATGAAACGAGCGTGCAGGCACTGAACCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCG
63 ACCCATGAAACGAGCGTGCAGGCACTCAGCCGGCTGGAGAGGCAGAATGAGCAAGCCGGGGATCG
29367376 ACCCGATCCCCC-T-CTATG-TGCTACCAATCCCG
128 ACCCGATCCCCCGTGC-ATGCTG-T--CAATCCCG
* *
29367408 CTGCCACAACCCTCGATCCGGCCAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGGCCAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
* * * * * *
29367473 CATGAAATGGGCGTGCAGGCACTTAGCTGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCG
66 CATGAAACGAGCGTGCAGGCACTCAGCCGGCTGGAGAGGCAGAATGAGCAAGCCGGGGATCG
29367535 GCCTGGTCCC
Statistics
Matches: 225, Mismatches: 50, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 7 0.03
158 107 0.48
159 105 0.47
160 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
CTGCCACAACCCTCGGTCTGGCCAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
CATGAAACGAGCGTGCAGGCACTCAGCCGGCTGGAGAGGCAGAATGAGCAAGCCGGGGATCGACC
CGATCCCCCGTGCATGCTGTCAATCCCG
Found at i:29367545 original size:159 final size:158
Alignment explanation
Indices: 29367091--29367546 Score: 458
Period size: 159 Copynumber: 2.9 Consensus size: 158
29367081 ACCGGTCCTA
* *
29367091 CTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGGCCAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
* * * * * * *
29367156 CAGGAAACGAGCATACGGGCACTCAGCCAG-TCGGAGAGGTAGAATAAGCAAGCCGGGGATCGGC
66 CATGAAACGAGCGTGCAGGCACTCAGCCGGCT-GGAGAGGCAGAATGAGCAAGCCGGGGATCGGC
*
29367220 CCGGTCCCCCGTGCATGCTGTCAATCCTG
130 CCGGTCCCCCGTGCATGCTGTCAATCCCG
* ** * ** * *
29367249 CTACTGCAACCCTCGGTCTGGTTC-GATCTTAGAC-TGGGAATGAACT-CTGTATGCATAAGTCA
1 CTGCCACAACCCTCGGTCTGG-CCAGGGCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCA
* * * * * * * *
29367311 ACCCATGAAACGAGCGTGCAGGCACTGAACCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCG
63 ACCCATGAAACGAGCGTGCAGGCACTCAGCCGGCTGGAGAGGCAGAATGAGCAAGCCGGGGATCG
* *
29367376 ACCCGATCCCCC-T-CTATG-TGCTACCAATCCCG
128 GCCCGGTCCCCCGTGC-ATGCTG-T--CAATCCCG
* *
29367408 CTGCCACAACCCTCGATCCGGCCAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGGCCAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
* * * * * *
29367473 CATGAAATGGGCGTGCAGGCACTTAGCTGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC
66 CATGAAACGAGCGTGCAGGCACTCAGCCGGCTGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCC
*
29367538 TGGTCCCCC
131 CGGTCCCCC
29367547 CTGTGTGTTG
Statistics
Matches: 234, Mismatches: 53, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 7 0.03
158 107 0.46
159 114 0.49
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
CTGCCACAACCCTCGGTCTGGCCAGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
CATGAAACGAGCGTGCAGGCACTCAGCCGGCTGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCC
CGGTCCCCCGTGCATGCTGTCAATCCCG
Found at i:29367629 original size:26 final size:26
Alignment explanation
Indices: 29367593--29367645 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29367583 CCGATCCGAT
29367593 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29367619 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29367645 C
1 C
29367646 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29368464 original size:26 final size:26
Alignment explanation
Indices: 29368435--29368513 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
29368425 TCGGTCCGAT
*
29368435 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
* *
29368461 CTTAGAATGGGGATGAACTCCATATG
1 CTTAGATTGGGGATGAACTCCGTATG
*
29368487 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
29368513 C
1 C
29368514 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGGATGAACTCCGTATG
Found at i:29368639 original size:210 final size:210
Alignment explanation
Indices: 29368289--29368671 Score: 599
Period size: 210 Copynumber: 1.8 Consensus size: 210
29368279 TAGACATGGA
* * * *
29368289 ATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGG
1 ATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGATCGGAGAGG
* * * * *
29368354 TAGAATGCGCAACCCGAGGATCGGCTCGGTCCACCCTACTTGCTGTCGATCCTGCTGTCGCAACC
66 CAGAATGCGCAACCAGAGGATCGGCTCGATCCACCCTACGTGCTGTCGATCCTGCTGCCGCAACC
*
29368419 CTTGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCAT
131 CTTAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCAT
29368484 ATGCTTAGATTGGGG
196 ATGCTTAGATTGGGG
* *
29368499 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGATTGGAGAGG
1 ATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGATCGGAGAGG
*
29368564 CAGAATGCGCAAGCCAG-GGATCGGCTCGATCC-CTCCTGCGTGCTGTCGATCCTGCTGCCGCAA
66 CAGAATGCGCAA-CCAGAGGATCGGCTCGATCCAC-CCTACGTGCTGTCGATCCTGCTGCCGCAA
* *
29368627 CCCTTAGTTCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGC
129 CCCTTAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
29368672 ATAAGTCAAC
Statistics
Matches: 156, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
209 1 0.01
210 152 0.97
211 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (210 bp):
ATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGATCGGAGAGG
CAGAATGCGCAACCAGAGGATCGGCTCGATCCACCCTACGTGCTGTCGATCCTGCTGCCGCAACC
CTTAGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCAT
ATGCTTAGATTGGGG
Found at i:29368977 original size:527 final size:527
Alignment explanation
Indices: 29367972--29368987 Score: 1217
Period size: 527 Copynumber: 1.9 Consensus size: 527
29367962 TAGACATGGA
** * *
29367972 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAATCGGCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAGG
* * *
29368037 CAAAATGCGCAAGCTGAGGATCGACCCAGTCCCTCCTTCGTTCTATCGATCCTGCTACCGTCACC
66 CAAAATGCGCAAGCAGAGGATCGACCCAGTCCCTCCTGCGTGCTATCGATCCTGCTACCGTCACC
* **
29368102 CTTGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
131 CTTGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAG
** ****
29368167 CATGCGGGCACTGACTCGACCGGAGAGGCATAATGCGCAAGGTGGGGATCAGCCCGATCCCCCTC
196 CATGCGGGCACTGACTCGACCAAAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTC
* * * * *
29368232 TGCGTGCTGCCAATCCCGTTGCGATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTT
261 TGCGTGCTGCCAATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
* * * * *
29368297 CGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGC
326 CCTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGC
* * * * * * * **
29368362 GCAACCCGAGGATCGGCTCGGTCCACCCTACTTGCTGTCGATCCTGCTGTCGCAACCCTTGGTTC
391 GCAACCAGAGGATCGGCTCGGTCCACCCGACGTGCTGTCGATCCCGCTGCCACAACCATTGGCCC
* * * *
29368427 GGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCATATGCTTAG
456 GCTCCGAGCTTAGAATGGGAATGAACTCCCTATGCTTAGAATGGGGATGAACTCCATATGCTTAG
29368492 ATTGGGG
521 ATTGGGG
* * * ***
29368499 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGATTGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAGG
* * * * *
29368564 CAGAATGCGCAAGCCAG-GGATCGGCTC-GATCCCTCCTGCGTGCTGTCGATCCTGCTGCCG-CA
66 CAAAATGCGCAAG-CAGAGGATCGACCCAG-TCCCTCCTGCGTGCTATCGATCCTGCTACCGTC-
* * * *
29368626 ACCCTT-AGTTCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAA
128 ACCCTTGA-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
* * * ** *
29368690 CAAGCGTGCGGGCGCTGAGC-CGGCCAAAGAGGCATAATGCGCAAGCCAAGGATCAGTTCGGTCC
192 CAAGCATGCGGGCACTGA-CTCGACCAAAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCC
* ** *
29368754 CCCGT-TGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCC-AGTTGGGGCTTAGACATGGAA
256 CCC-TCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCAGTCCGA-CTGGGGCTTAGACATGGAA
* *
29368817 TGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTGCGGGCGCTCAGCCGGCCGAAGAGGC
319 TGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGC
* * *
29368882 AGAATGCGTAAGCTAG-GGATCGGCTCGGTCCCCCCGACGTGCTG-CTGATCCCGCTGCCACAAC
384 AGAATGCGCAA-CCAGAGGATCGGCTCGGTCCACCCGACGTGCTGTC-GATCCCGCTGCCACAAC
* *
29368945 CATTGGCCCAGCT-GGGGCTTAGACAT-GGAATGAACTCCCTATG
447 CATTGGCCC-GCTCCGAGCTTAGA-ATGGGAATGAACTCCCTATG
29368988 ACTAAGCCAA
Statistics
Matches: 407, Mismatches: 71, Indels: 22
0.81 0.14 0.04
Matches are distributed among these distances:
526 5 0.01
527 393 0.97
528 9 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (527 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAGG
CAAAATGCGCAAGCAGAGGATCGACCCAGTCCCTCCTGCGTGCTATCGATCCTGCTACCGTCACC
CTTGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAG
CATGCGGGCACTGACTCGACCAAAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTC
TGCGTGCTGCCAATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC
CCTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGC
GCAACCAGAGGATCGGCTCGGTCCACCCGACGTGCTGTCGATCCCGCTGCCACAACCATTGGCCC
GCTCCGAGCTTAGAATGGGAATGAACTCCCTATGCTTAGAATGGGGATGAACTCCATATGCTTAG
ATTGGGG
Found at i:29369082 original size:317 final size:317
Alignment explanation
Indices: 29368499--29369107 Score: 665
Period size: 317 Copynumber: 1.9 Consensus size: 317
29368489 TAGATTGGGG
* * * * ** *
29368499 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGATTGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGCCGACCGAAGAGG
* * *
29368564 CAGAATGCGCAAGCCAGGGATCGGCTCGATCCCTCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
66 CAGAATGCGCAAGCCAGGGATCGGCTCGATCCCTCCCGCGTGCTGTCGATCCCGCTGCCACAACC
* ** * * * ** *
29368629 CTTAGTTCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACAAG
131 ATTAGCCCAGTCTGAGCTTAGAATGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAG
* * * * * * * *
29368694 CGTGCGGGCGCTGAGCCGGCCAAAGAGGCATAATGCGCAAGCCAAGGATCAGTTCGGTCCCCCGT
196 CGTGCGGGCGATCAACCAGCCAAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCCCGC
* *
29368759 TGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCAGTTGGGGCTTAGACATGGA
261 TGCGTGCTGTCGATCCCGCTACCACAACCCTCAGTCCAGTTGGGGCTTAGACATGGA
* * * * * *
29368816 ATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTGCGGGCGCTCAGCCGGCCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGCCGACCGAAGAGG
* * *
29368881 CAGAATGCGTAAGCTAGGGATCGGCTCGGTCCC-CCCGACGTGCTG-CTGATCCCGCTGCCACAA
66 CAGAATGCGCAAGCCAGGGATCGGCTCGATCCCTCCCG-CGTGCTGTC-GATCCCGCTGCCACAA
* * *
29368944 CCATTGGCCCAG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATG-ACTAAGCCAACCCATGAA
129 CCATTAGCCCAGTCT-GAGCTTAGA-ATGGGAATGAACTCCCTATGCA-TAAGCCAACCCACGAA
* ** ** *
29369006 ACAGGCGTGCAGGGCGATCAACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CTGAT
191 ACAAGCGTGC-GGGCGATCAACCAGCCAAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTC-GAT
* *
29369070 CCCCC-CTGCGTGCTGTCGATCCTGCTACCGCAACCCTC
254 CCCCCGCTGCGTGCTGTCGATCCCGCTACCACAACCCTC
29369108 GGTCTGGTCT
Statistics
Matches: 236, Mismatches: 49, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
316 7 0.03
317 184 0.78
318 45 0.19
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (317 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGCCGACCGAAGAGG
CAGAATGCGCAAGCCAGGGATCGGCTCGATCCCTCCCGCGTGCTGTCGATCCCGCTGCCACAACC
ATTAGCCCAGTCTGAGCTTAGAATGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAG
CGTGCGGGCGATCAACCAGCCAAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCCCGC
TGCGTGCTGTCGATCCCGCTACCACAACCCTCAGTCCAGTTGGGGCTTAGACATGGA
Found at i:29369125 original size:159 final size:159
Alignment explanation
Indices: 29368486--29369148 Score: 614
Period size: 159 Copynumber: 4.2 Consensus size: 159
29368476 AACTCCATAT
* * * * * * * *
29368486 GCTTAGA-TTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC-GAGCGTGCAGGCACTC
1 GCTTAGACATGGGAATGAACTCCCTATG-CTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTC
*** * *
29368549 AGCCGATTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCTCCTGCGTGCTGTCGAT
64 AGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGAT
* * * * *
29368614 CCTGCTGCCGCAACCCTTAGTTCGGTCT-GA
129 CCCGCTGCCACAACCCTCAGTCCAGTCTGGA
* * ** * * * *
29368644 TCTTAGA-TTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACATGGGAATGAACTCCCTATGC-TAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCA
* * * * * * * *
29368708 GCCGGCCAAAGAGGCATAATGCGCAAGCCAAGGATCAGTTCGGTCCCCCGTTGCGTGCTGTCGGT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCC-CTGCGTGCTGTCGAT
*
29368773 CCCGCTGCCACAACCCTCAGTCCAGT-TGGG
129 CCCGCTGCCACAACCCTCAGTCCAGTCTGGA
* **
29368803 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGGAATGAACTCCCTATG-CTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCA
* * *
29368867 GCCGGCCGAAGAGGCAGAATGCGTAAGCTAGGGATCGGCTCGGTCCCCCC-GACGTGCTG-CTGA
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTG-CGTGCTGTC-GA
* ** * *
29368930 TCCCGCTGCCACAACCATTGGCCCAG-CTGGG
128 TCCCGCTGCCACAACCCTCAGTCCAGTCTGGA
*
29368961 GCTTAGACAT-GGAATGAACTCCCTATGACTAAGCCAACCCATGAAACAGGCGTGCAGGGCGATC
1 GCTTAGACATGGGAATGAACTCCCTATG-CTAAGCCAACCCATGAAACAGGCGTGC-GGGCGCTC
* * * *
29369025 AACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CTGATCCCCCCTGCGTGCTGTCGA
64 AGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTC-GATCCCCCCTGCGTGCTGTCGA
* * * * **
29369089 TCCTGCTACCGCAACCCTCGGTCTGGTCT-GA
128 TCCCGCTGCCACAACCCTCAGTCCAGTCTGGA
* *
29369120 TCTTAGAC-TGGGAATGAACTCCGTATGCT
1 GCTTAGACATGGGAATGAACTCCCTATGCT
29369149 TAGATTGGGG
Statistics
Matches: 416, Mismatches: 74, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 181 0.44
159 226 0.54
160 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGGAATGAACTCCCTATGCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCAGTCCAGTCTGGA
Found at i:29369157 original size:26 final size:26
Alignment explanation
Indices: 29369121--29369173 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29369111 CTGGTCTGAT
29369121 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
29369147 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29369173 C
1 C
29369174 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29369537 original size:26 final size:26
Alignment explanation
Indices: 29369485--29369537 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29369475 CCGGTCTGAT
*
29369485 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
29369511 CTTAGACAT-GGAATGAACTCTGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
29369537 C
1 C
29369538 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:29369879 original size:157 final size:158
Alignment explanation
Indices: 29369510--29369880 Score: 396
Period size: 158 Copynumber: 2.4 Consensus size: 158
29369500 AACTCCGTAT
* * * * *
29369510 GCTTAGACATGGAATGAACTCTGC-ATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
* * *
29369574 CCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCTCCTACGTGCTGTCGATC
65 CCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTCCTACGCGCTGTCGATC
* * *
29369639 CTGCTGTCGCAACCCTTGATCCGATCTGA
130 CCGCTGTCGCAACCCTCGATCCGAGCTGA
* * * * * *
29369668 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
* * * * * * *
29369732 GCCGGCCGTAGAGGCATAATGCGCAAGTCAGGGATCGGCCTGATCTCC-CTCTATGCGCTGTCGG
65 CCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATC-CCTC-CTACGCGCTGTCGA
* * *
29369796 TCCCGCTG-C-CATCCCTCGGTCCG-GCTGGG
128 TCCCGCTGTCGCAACCCTCGATCCGAGCT-GA
29369825 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GATGTGCG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-TGTGCG
29369881 TTTGCTCGAC
Statistics
Matches: 174, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.02
157 60 0.34
158 91 0.52
159 20 0.11
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAC
CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTCCTACGCGCTGTCGATCC
CGCTGTCGCAACCCTCGATCCGAGCTGA
Found at i:29370027 original size:26 final size:26
Alignment explanation
Indices: 29369986--29370036 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29369976 GGTCTGATCT
*
29369986 TAGACTGGGAATGAAC-TCTGTATGCA
1 TAGACTGGGAAGGAACTTC-GTATGCA
*
29370012 TAGACTGGGGAGGAACTTCGTATGC
1 TAGACTGGGAAGGAACTTCGTATGC
29370037 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAAGGAACTTCGTATGCA
Found at i:29377033 original size:159 final size:158
Alignment explanation
Indices: 29376639--29377093 Score: 346
Period size: 159 Copynumber: 2.9 Consensus size: 158
29376629 AACTCCGTAT
** * * ** *
29376639 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
* * * * *** * * * * *
29376703 GCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGTCTGGCCCGATCCCCTCTTGCATGCTGTCGAT
65 GCCAGCCAGAGAGGCAGAATACGCAAGCCAGGGAAAGGCCAGATCCCC-CCTGCGTGATATCGAT
* * ** * * ***
29376768 CCTGCTATCGTAAC-CTTCGGTC-CGATCCAA
129 CCCGCTACCACAACTC-TCGGTCTGGCT-GGG
* ** * * * * *
29376798 TCTTAGACTGGGAATGAACTCTGTATGACTAAGTCAACCCATGAAATGAGTGTTCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
* * * *
29376863 CCAGTCAGAGAGGCATAATACGCAAGTCAGGGAAAGGCCCAG-TCCCCCTCTGTGTGATATCGAT
66 CCAGCCAGAGAGGCAGAATACGCAAGCCAGGGAAAGG-CCAGATCCCCC-CTGCGTGATATCGAT
29376927 CCCGCTACCACAACTCTCGGTCTGGCTGGG
129 CCCGCTACCACAACTCTCGGTCTGGCTGGG
* *
29376957 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
* * * ** * *
29377021 G-CATGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTATCGAT
65 GCCA-GCCAGAGAGGCAGAATACGCAAGCCAGGGAAAGGCCAGATCCCCCCTGCGTGATATCGAT
*
29377085 CCTGCTACC
129 CCCGCTACC
29377094 GTAACCCTCG
Statistics
Matches: 232, Mismatches: 56, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
158 28 0.12
159 197 0.85
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
CCAGCCAGAGAGGCAGAATACGCAAGCCAGGGAAAGGCCAGATCCCCCCTGCGTGATATCGATCC
CGCTACCACAACTCTCGGTCTGGCTGGG
Found at i:29377152 original size:26 final size:26
Alignment explanation
Indices: 29377116--29377166 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
29377106 TCGATTTGAT
29377116 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
29377142 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
29377167 GTCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:29377984 original size:158 final size:156
Alignment explanation
Indices: 29377523--29377968 Score: 518
Period size: 158 Copynumber: 2.8 Consensus size: 156
29377513 CTTCATATGC
* * * * *
29377523 TTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCG-TCGAGC
1 TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTC-AGC
* * * * ** *
29377587 CGGACAAAGAGGCATAATGTGCAAGCCGGGGATTGGCCTGGTCCCCCTCTGCGTGCTACCGATCC
65 TGGAC-AAGAGGCAGAATGCGTAAGCCGGGGA-TCACCTGGTCCCCC-CTGCGTGCTGCCGATCC
*
29377652 TGCTACCACAACCCTCGATTCAGCTGGGAA
127 TGCTACCACAACCCTCGATCCAGCTGGGAA
* * *
29377682 TTAGATGTGGAATGAACTCCATATGCCCAAGCCAACCCATGAAATGTGCGTGCGGGTGCTCAGCT
1 TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCT
* * * * * * *
29377747 AGACAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCATGATTCCCCCTGCATGCTGCCGGTCCCG
66 GGACA-AGAGGCAGAATGCGTAAGCCGGGGATCA-CCTGGTCCCCCCTGCGTGCTGCCGATCCTG
*
29377812 CTACCACAACCCTCGATCCTGCTGGGAA
129 CTACCACAACCCTCGATCCAGCTGGGAA
* *
29377840 TTAGACGTGGAATGAACT-CACTATGCCCAAGCCAACCAACGAAACGTGCGTGCGGGCGCTCAGC
1 TTAGACGTGGAATGAACTCCA-TATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGC
* * * * *
29377904 TGGCCGAAGAGGCAGAATGCGTAAGCTGAGGATCACCTTGGTCCCCCCTACGTGCTGCCAATCCT
65 TGGAC-AAGAGGCAGAATGCGTAAGCCGGGGATCACC-TGGTCCCCCCTGCGTGCTGCCGATCCT
29377969 ACTGTCGCAA
Statistics
Matches: 240, Mismatches: 41, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.01
158 148 0.62
159 87 0.36
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCATGAAACGTGCGTGCGGGCGCTCAGCT
GGACAAGAGGCAGAATGCGTAAGCCGGGGATCACCTGGTCCCCCCTGCGTGCTGCCGATCCTGCT
ACCACAACCCTCGATCCAGCTGGGAA
Found at i:29378026 original size:26 final size:26
Alignment explanation
Indices: 29377997--29378049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29377987 CTGATCCGAT
29377997 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
29378023 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29378049 C
1 C
29378050 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29379149 original size:26 final size:26
Alignment explanation
Indices: 29379120--29379172 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29379110 TCGGTCCGAT
29379120 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29379146 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29379172 C
1 C
29379173 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29379245 original size:196 final size:194
Alignment explanation
Indices: 29378892--29379526 Score: 706
Period size: 196 Copynumber: 3.3 Consensus size: 194
29378882 GTGTTGTCGA
* * *
29378892 TCCTACTACTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGAC
1 TCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
29378957 TGGGGATGAACTCTGTATGCCAAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGTCGGTCGG
66 TGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGA
* * *
29379022 AGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTATTGATCTTGTTGCTG
131 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTATTGATC-TG-TGCTG
29379087 G
194 G
* * *
29379088 TCCTGCTACCGTAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * * *
29379153 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTGCGGGCGCTCAGCCGGCCG
66 -TGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCG
** *
29379217 AAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCATTCCCCTCTGCGTGCTGTTGATC----CT-G
130 AAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTATTGATCTGTGCTGG
** * *
29379277 --CTGCT---GCAACCCTTGGTCCGGTCTAATCTTATACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
29379337 TGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAAGCATGCGAGTGCTCAGCCGATCGT
66 TGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGA
* * * * * *
29379402 AGAGGCATAATGCGCAAGCCGGGGAT-AGCCCGACCCCCCTCTACGTGCTACTGATCCTGCTGCC
131 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG-CTCCCCTCTGCGTGCTATTGAT-CTG-TGCT
29379466 GG
193 GG
* * *
29379468 TCCTGCTACCACAACCCTCAGTTCAG-CTG-TGGCTTAGACAT-GGAATGAACTCCGTATGC
1 TCCTGCTACCGCAACCCTCAGTCCGGTCTGAT--CTTAGAC-TGGGAATGAACTCCGTATGC
29379527 CTAGGTCAAC
Statistics
Matches: 362, Mismatches: 59, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
183 5 0.01
184 140 0.39
185 1 0.00
187 5 0.01
189 1 0.00
190 3 0.01
191 1 0.00
193 5 0.01
194 1 0.00
195 2 0.01
196 196 0.54
197 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (194 bp):
TCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGA
AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTATTGATCTGTGCTGG
Found at i:29379333 original size:26 final size:26
Alignment explanation
Indices: 29379304--29379356 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29379294 CCGGTCTAAT
*
29379304 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29379330 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29379356 C
1 C
29379357 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29379408 original size:184 final size:184
Alignment explanation
Indices: 29379118--29379464 Score: 473
Period size: 184 Copynumber: 1.9 Consensus size: 184
29379108 GTTCGGTCCG
*
29379118 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
* ** * * * *
29379183 CCACGGAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGC
66 CCACGAAACAAGCATGCGAGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGAT-AGC
** * **
29379248 CC-ATTCCCCTCTGCGTGCTGTTGATCCTGCTGCTGCAACCCTTGGTCCGGTCTA
130 CCGACCCCCCTCTACGTGCTACTGATCCTGCTGCTGCAACCCTTGGTCCGGTCTA
* * *
29379302 ATCTTATACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCAAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCAAAGCCAA
* * * * *
29379366 CCCATGAAACAAGCATGCGAGTGCTCAGCCGATCGTAGAGGCATAATGCGCAAGCCGGGGATAGC
65 CCCACGAAACAAGCATGCGAGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATAGC
29379431 CCGACCCCCCTCTACGTGCTACTGATCCTGCTGC
130 CCGACCCCCCTCTACGTGCTACTGATCCTGCTGC
29379465 CGGTCCTGCT
Statistics
Matches: 140, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 5 0.04
184 135 0.96
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
CCACGAAACAAGCATGCGAGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATAGCC
CGACCCCCCTCTACGTGCTACTGATCCTGCTGCTGCAACCCTTGGTCCGGTCTA
Found at i:29379451 original size:380 final size:378
Alignment explanation
Indices: 29378739--29379526 Score: 1123
Period size: 380 Copynumber: 2.1 Consensus size: 378
29378729 GTGGCTCAAA
*
29378739 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
29378804 CCACGAAACGAACGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCACAAGCCGAGAATCGGC
66 CCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGAGAATCGGC
* *
29378869 CCATTCCCCCTGCGTGTTGTCGATCCTACTACTGCAACCCTCAGTCCGGTCTGATCTTAGACTGG
131 CCATTCCCCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCAGTCCGGTCTAATCTTAGACTGG
* *
29378934 GAATGAACTCCGTACGCTTAGACTGGGGATGAACTCTGTATGCCAAAGTCAACCCATGAAACGAG
196 GAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAAG
** * * * * * **
29378999 TGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCTCT
261 CATGCGAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGCCCCCCTCT
* * * * * ** *
29379064 GCGTGCTATTGATCTTGTTGCTGGTCCTGCTACCGTAACCCTCAGTTCGGTCCG
326 ACGTGCTACTGATCCTGCTGCCGGTCCTGCTACCACAACCCTCAGTTCAG-CCG
29379118 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
29379183 CCACGGAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGC
66 CCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGAGAATCGGC
* * * ** *
29379248 CCATTCCCCTCTGCGTGCTGTTGATCCTGCTGCTGCAACCCTTGGTCCGGTCTAATCTTATACTG
131 CCATTCCCC-CTGCGTGCTGTCGATCCTACTACTGCAACCCTCAGTCCGGTCTAATCTTAGACTG
*
29379313 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAA
195 GGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAA
* * *
29379378 GCATGCGAGTGCTCAGCCGATCGTAGAGGCATAATGCGCAAGCCGGGGAT-AGCCCGACCCCCCT
260 GCATGCGAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCG-CCCCCCT
*
29379442 CTACGTGCTACTGATCCTGCTGCCGGTCCTGCTACCACAACCCTCAGTTCAGCTG
324 CTACGTGCTACTGATCCTGCTGCCGGTCCTGCTACCACAACCCTCAGTTCAGCCG
29379497 -TGGCTTAGACAT-GGAATGAACTCCGTATGC
1 AT--CTTAGAC-TGGGAATGAACTCCGTATGC
29379527 CTAGGTCAAC
Statistics
Matches: 362, Mismatches: 42, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
378 1 0.00
379 136 0.38
380 224 0.62
381 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (378 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGAGAATCGGC
CCATTCCCCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCAGTCCGGTCTAATCTTAGACTGG
GAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAAG
CATGCGAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGCCCCCCTCT
ACGTGCTACTGATCCTGCTGCCGGTCCTGCTACCACAACCCTCAGTTCAGCCG
Found at i:29379853 original size:26 final size:26
Alignment explanation
Indices: 29379817--29379868 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
29379807 CCAATCTGAT
29379817 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
29379843 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29379869 TCTAAGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29380570 original size:26 final size:26
Alignment explanation
Indices: 29380534--29380586 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29380524 GGCTCAAAAT
29380534 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29380560 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29380586 C
1 C
29380587 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29380782 original size:26 final size:26
Alignment explanation
Indices: 29380744--29380796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29380734 TCGGTCTGAT
*
29380744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29380770 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29380796 C
1 C
29380797 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29381698 original size:26 final size:26
Alignment explanation
Indices: 29381659--29381711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29381649 GGCTCAAAAT
29381659 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
*
29381685 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGCGAATGAACTCCATATG
29381711 C
1 C
29381712 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:29382196 original size:26 final size:26
Alignment explanation
Indices: 29382160--29382212 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29382150 CTGGTCCTAT
29382160 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29382186 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29382212 C
1 C
29382213 CAATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29382556 original size:26 final size:26
Alignment explanation
Indices: 29382527--29382579 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29382517 CCGATCCGAT
*
29382527 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCAGTATG
*
29382553 CTTAGACATTGAATGAACTCAGTATG
1 CTTAGACATGGAATGAACTCAGTATG
29382579 C
1 C
29382580 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCAGTATG
Found at i:29383081 original size:26 final size:26
Alignment explanation
Indices: 29383052--29383104 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29383042 CCGATCTGAT
29383052 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29383078 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29383104 C
1 C
29383105 CTGAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29383418 original size:159 final size:158
Alignment explanation
Indices: 29383233--29383569 Score: 365
Period size: 159 Copynumber: 2.1 Consensus size: 158
29383223 CCGGTTTGAT
* * * * * *
29383233 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGATGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGATCAGC
* ** * **** *
29383298 CGGCC-GAAAAGGCATAATGCGTAAGTCGAGGATTAGCCCGGTCCTCTTTTGCATGCTATCGGTC
66 CGGCCAG-AAAGGCAGAATGCAAAAGTCGAGGATCAGCCCGGTCC-CCCCAGCATGCTATCGATC
29383362 CTGCTGCCACAACCCTCGGTCTGACTGGGG
129 CTGCTGCCACAACCCTCGGTCTGACTGGGG
* * *
29383392 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGATCAG
* * * *
29383456 CTGGCCAGAGAGGCAGAATGCAAAAGTCGAGGATCGGCCCGGTCCCCCCAGCGTGCTATCGATCC
65 CCGGCCAGAAAGGCAGAATGCAAAAGTCGAGGATCAGCCCGGTCCCCCCAGCATGCTATCGATCC
** * * **
29383521 TGCTGCCGTAACCCTCGGTCTG-GTCCGAT
130 TGCTGCCACAACCCTCGGTCTGACT-GGGG
29383550 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
29383570 TGTATGCTTA
Statistics
Matches: 146, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 53 0.36
159 89 0.61
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGATCAGC
CGGCCAGAAAGGCAGAATGCAAAAGTCGAGGATCAGCCCGGTCCCCCCAGCATGCTATCGATCCT
GCTGCCACAACCCTCGGTCTGACTGGGG
Found at i:29383579 original size:26 final size:26
Alignment explanation
Indices: 29383550--29383602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29383540 CTGGTCCGAT
* *
29383550 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
29383576 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29383602 C
1 C
29383603 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29383749 original size:183 final size:184
Alignment explanation
Indices: 29383391--29384140 Score: 776
Period size: 184 Copynumber: 4.0 Consensus size: 184
29383381 TCTGACTGGG
* * * * *
29383391 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACA
* * * * * *
29383455 GCTGGCC-AGAGAGGCAGAATGCAAAAGTCGAGGATCGGCCCGGTCCCCCCAGCGTGCTATCGAT
65 GCCGACCGA-AGAGGCAGAATGCATAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGAT
** * *
29383519 CCTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
129 CCTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
29383575 GCTTAGACTGGGGATAAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCAGAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAG
* *
29383640 CCGACCGAAGAGGCATAATGCATAAGCCGAGGATTGGCCCGGT-CCCCCTGCGTGCTACCGATCC
66 CCGACCGAAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
* **
29383704 TGCTATCGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
29383758 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG--CA-
* * * *
29383823 CCAGCCGGAGAGGCCGATCGAAGAGGTAGAATGC-TCAAGTCGGGGATCGACCCGGTGCCCCCCT
63 -CAGCC---GA---C---CGAAGAGGCAGAATGCAT-AAGCCGAGGATCGGCCCGGT-CCCCCCT
* * * * * *
29383887 GCGTGCTACCGATTCTACTGTCACAACCCTCGGTCTGGTCCGATCTTAGGCTGGGAATGAACTAC
116 GCGTGCTACCGATCCTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
29383952 GTAT
181 GTAT
* * * * *
29383956 ACTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACA
* * * *** * * ***
29384020 GTCGACCGGAGAGGTAGAATGTGCAAGCCG-GG-TCCGGCCCGATCCCCTCCTGTGTGCTGTGGA
65 GCCGACCGAAGAGGCAGAATGCATAAGCCGAGGAT-CGGCCCGGTCCCC-CCTGCGTGCTACCGA
* *
29384083 TCCTGCTATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
128 TCCTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
29384140 G
1 G
29384141 ACTAAGTCAA
Statistics
Matches: 472, Mismatches: 72, Indels: 44
0.80 0.12 0.07
Matches are distributed among these distances:
183 128 0.27
184 157 0.33
185 22 0.05
187 4 0.01
188 1 0.00
190 2 0.00
191 2 0.00
193 1 0.00
194 4 0.01
195 1 0.00
196 31 0.07
198 118 0.25
199 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (184 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAG
CCGACCGAAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
TGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:29383762 original size:26 final size:26
Alignment explanation
Indices: 29383733--29383785 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29383723 CCGGTTTGAT
29383733 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29383759 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29383785 C
1 C
29383786 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29384498 original size:26 final size:26
Alignment explanation
Indices: 29384462--29384513 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29384452 TCCATCTGAT
*
29384462 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29384488 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29384514 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29384844 original size:26 final size:26
Alignment explanation
Indices: 29384815--29384867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29384805 CCGGTCTGAT
*
29384815 CTTAGA-TTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
29384841 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
29384867 C
1 C
29384868 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:29385590 original size:26 final size:26
Alignment explanation
Indices: 29385538--29385590 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29385528 GGCTCAAACT
*
29385538 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
29385564 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCACATG
29385590 C
1 C
29385591 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:29385908 original size:26 final size:26
Alignment explanation
Indices: 29385878--29385929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29385868 TCCTGTTCAA
*
29385878 TCTTAGACT-GGGAATGAACTCTGTAT
1 TCTTAGACTAGGG-ATAAACTCTGTAT
29385904 TCTTAGACTAGGGATAAACTCTGTAT
1 TCTTAGACTAGGGATAAACTCTGTAT
29385930 GCCTAAGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTTAGACTAGGGATAAACTCTGTAT
Found at i:29386619 original size:26 final size:26
Alignment explanation
Indices: 29386590--29386642 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29386580 CCAATCCGAT
*
29386590 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29386616 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29386642 C
1 C
29386643 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29387076 original size:501 final size:501
Alignment explanation
Indices: 29386085--29387081 Score: 1078
Period size: 501 Copynumber: 2.0 Consensus size: 501
29386075 CGGTCTGGTT
* *
29386085 CGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATCGAATGAACTCTATATGCTTAAGCCA
1 CGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATCGAATGAACTCCATATGCCTAAGCCA
* * * *
29386150 ACCCATGAAACGAGCGTGCGGGCACTCAGTTGACCGGAGAGGTAGAATGCGTAAGCCAGGGATCG
66 ACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATAG
** * * * * *
29386215 GCCTGGTCCCCCCTACGTGCTGTCGATCCCACTTCCGCAACCCTCGATCCGGTCCGATCTTAGAC
131 GCCCCGTCCCCCCTACGTGCTGTCGATCCCACTACCACAACCCTCGATCCGCTCAGAGCTTAGAC
* ** * * * * * * * **
29386280 TGGGAATTAACTCTGTATGCCTAAGTTAACCCATGCACCGAGCATTCGGGAACTGAGTCGGTCGG
196 TGGGAATGAACTCTGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGAACTCAGCCGACCGG
* * * * * * * * *
29386345 AGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCCTCTGCTTGCTGCCAGTCTCGCTGCC
261 AAAGACAGAATGCACAAGCCAGGGATCGGCTCGATCCCACTCTCCGTGCTGCCAATCTCGCTACC
*
29386410 AGAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
326 AGAACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
* * ** * ** *
29386475 AATGGGCGTACGGGTGCTCAGCCGATTGGAGAGGCAGAATGTACAAGCCAGGGATCGACCCAGTC
391 AACGAGCGTACGGGCACTCAGCCAAGCGGAAAGGCAGAATGTACAAGCCAGGGATCGACCCAGTC
* *
29386540 CCCCCTGCGCACTGCCGATCCTACTGCCGCAACCCTCGGTCCAATC
456 CCCCCTGCGCACTGCCGATCCCACTGCCACAACCCTCGGTCCAATC
* * * * *
29386586 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTC
1 CGATCTTAGACTAGGAATGAACTCCATATGCTTAGACAT-CGAATGAACTCCATATGCCTAAGCC
* *
29386650 AACCCATGAAACGAGCGTGCGGGCACTCAG-CGACTGGAGAGGCAGAATGCGCAAGCCGGGGATA
65 AACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATA
* * *
29386714 GGCCCCGTCCCCCTCTACGTGCTGTCGATCCCGCTACCACAACCCTC-AGTCTGACT-AGGGCTT
130 GGCCCCGTCCCCC-CTACGTGCTGTCGATCCCACTACCACAACCCTCGA-TCCG-CTCAGAGCTT
* **
29386777 AGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCAATGAAACAAGCGTGCGGGCGCTCAGCCG
192 AGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGAACTCAGCCG
* *
29386841 ACCGGAAAGACAGAATGCGCAAGCCAGGGATCGGC-CTGATCCCACT-TCCGTGCTGTCAATC-C
256 ACCGGAAAGACAGAATGCACAAGCCAGGGATCGGCTC-GATCCCACTCTCCGTGCTGCCAATCTC
** * * * * * *
29386903 TGCTACCCTAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATTAACTCCGTATGCCTAAGTC
320 -GCTACCAGAACCCTCGGTC-CGACTGGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
* * * * * * * *
29386966 AACCGACGAAACGAGCGTGCGGGCACTGAGCCAAGCGGAAAGGCATAATGTGCAAGTCGGGGATC
382 AACCCACAAAACGAGCGTACGGGCACTCAGCCAAGCGGAAAGGCAGAATGTACAAGCCAGGGATC
* * ** * * **
29387031 GGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAACCCTCGGTC
447 GACCCAGTCCCCC-CTGCGCACTGCCGATCCCACTGCCACAACCCTCGGTC
29387082 TGGCTGGGGC
Statistics
Matches: 402, Mismatches: 84, Indels: 20
0.79 0.17 0.04
Matches are distributed among these distances:
499 2 0.00
500 159 0.40
501 239 0.59
502 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (501 bp):
CGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATCGAATGAACTCCATATGCCTAAGCCA
ACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATAG
GCCCCGTCCCCCCTACGTGCTGTCGATCCCACTACCACAACCCTCGATCCGCTCAGAGCTTAGAC
TGGGAATGAACTCTGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGAACTCAGCCGACCGG
AAAGACAGAATGCACAAGCCAGGGATCGGCTCGATCCCACTCTCCGTGCTGCCAATCTCGCTACC
AGAACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
AACGAGCGTACGGGCACTCAGCCAAGCGGAAAGGCAGAATGTACAAGCCAGGGATCGACCCAGTC
CCCCCTGCGCACTGCCGATCCCACTGCCACAACCCTCGGTCCAATC
Found at i:29387121 original size:159 final size:157
Alignment explanation
Indices: 29386615--29387242 Score: 611
Period size: 158 Copynumber: 4.0 Consensus size: 157
29386605 AACTCCGTAT
* * *
29386615 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCACTCAG
* * *
29386680 -CGACTGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCCGTCCCCCTCTACGTGCTGTCGATC
66 CCGAC-GGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATC
* *
29386744 CCGCTACCACAACCCTCAGTCTGACTAGG
130 CCGCTACCACAACCCTCGGTCTGGCT-GG
* * * *
29386773 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCAATGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCACTCA
* * * * * * *
29386837 GCCGACCGGAAAGACAGAATGCGCAAGCCAGGGATCGGCCTGATCCCACT-TCCGTGCTGTCAAT
65 GCCGA-CGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGAT
* *
29386901 CCTGCTACC-CTAACCCTCGGTCTGGTCTGA
129 CCCGCTACCAC-AACCCTCGGTCTGG-CTGG
* * * * *
29386931 TCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
29386996 CCAAGCGGAAAGGCATAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
66 CCGA-CGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATC
* *
29387061 CCGTTGCCACAACCCTCGGTCTGGCTGGG
130 CCGCTACCACAACCCTCGGTCTGGCT-GG
* ** * ** * * * *
29387090 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCACAAAATGGGTGTACGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCACTCA
* * * * * * * * * **
29387154 GCTGATCGGAGAGGTAGAATACGTAAACCGAGGATCGGCCCGGTCCCCC-CTGCATGCTACCGAT
65 GCCGA-CGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGAT
* *
29387218 CCTGCTACCCCAACCCTCGGTCTGG
129 CCCGCTACCACAACCCTCGGTCTGG
29387243 TCCAATCCTA
Statistics
Matches: 381, Mismatches: 79, Indels: 20
0.79 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 216 0.57
159 160 0.42
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCACTCAG
CCGACGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCTGGCTGG
Found at i:29387191 original size:317 final size:316
Alignment explanation
Indices: 29386616--29387275 Score: 797
Period size: 317 Copynumber: 2.1 Consensus size: 316
29386606 ACTCCGTATG
* *
29386616 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* *
29386681 GACTGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCCGTCCCCCTCTACGTGCTGTCGATCCC
66 AACTGGAAAGGCAGAATGCGCAAGCCGGGGATAGGCCCCGTCCCCCTCTACGTGCTGTCGATCCC
** *
29386746 GCTACCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
131 GCTACCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAC
* * * *
29386811 CAATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAAAGACAGAATGCGCAAGCCAGGGATCGGC
196 CAATCAAACAAGCGTGCGGGCACTCAGCCGACCGGAAAGACAGAATACGCAAACCAGGGATCGGC
* * * ** * **
29386876 CTGATCCCACTTCCGTGCTGTCAATCCTGCTACCCTAACCCTCGGTCTGGTCTGAT
261 CCGATCCCACCTCCATGCTACCAATCCTGCTACCCCAACCCTCGGTCTGGTCCAAT
* * * *
29386932 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG-
* * * * * * *
29386997 CAAGC-GGAAAGGCATAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
65 CAA-CTGGAAAGGCAGAATGCGCAAGCCGGGGATAGGCCCCGTCCCCCTCTACGTGCTGTCGATC
* * * * *
29387061 CCGTTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCA
129 CCGCTACCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCA
* * * * * * ** *
29387126 ACCCA-CAAA-ATGGGTGTACGGGCACTCAGCTGATCGGAGAGGTAGAATACGTAAACC-GAGGA
194 ACCAATCAAACAAGCGTG--CGGGCACTCAGCCGACCGGAAAGACAGAATACGCAAACCAG-GGA
* * * *
29387188 TCGGCCCGGTCCCCCCTGCATGCTACCGATCCTGCTACCCCAACCCTCGGTCTGGTCCAAT
256 TCGGCCCGATCCCACCTCCATGCTACCAATCCTGCTACCCCAACCCTCGGTCTGGTCCAAT
* *
29387249 CCTAAACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
29387276 TTAGACTGGG
Statistics
Matches: 287, Mismatches: 52, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
315 5 0.02
316 62 0.22
317 219 0.76
318 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (316 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
AACTGGAAAGGCAGAATGCGCAAGCCGGGGATAGGCCCCGTCCCCCTCTACGTGCTGTCGATCCC
GCTACCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAC
CAATCAAACAAGCGTGCGGGCACTCAGCCGACCGGAAAGACAGAATACGCAAACCAGGGATCGGC
CCGATCCCACCTCCATGCTACCAATCCTGCTACCCCAACCCTCGGTCTGGTCCAAT
Found at i:29387998 original size:26 final size:26
Alignment explanation
Indices: 29387969--29388046 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
29387959 GGCTCTAACT
29387969 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
29387995 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
*
29388021 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
29388047 GCTAAGCCAA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:29388374 original size:26 final size:26
Alignment explanation
Indices: 29388338--29388390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29388328 CCAGTTCGAT
29388338 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29388364 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29388390 C
1 C
29388391 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29388564 original size:26 final size:26
Alignment explanation
Indices: 29388535--29388587 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29388525 CCGGTCCGAT
*
29388535 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
29388561 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
29388587 C
1 C
29388588 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:29388672 original size:197 final size:197
Alignment explanation
Indices: 29388309--29388694 Score: 497
Period size: 197 Copynumber: 2.0 Consensus size: 197
29388299 CTGCCGATCC
*
29388309 TGCTACTGCAACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTACTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
29388374 GGATGAACTCCGTATGCCTATGTCAACCCACGAAATGAGCGAACGGACGCTCAGTCGGCCAGAGA
66 GAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAACGGACGCTCAGCCGGCCAGAGA
* * * *
29388439 GGCAGAATGTGCAAGCTGAGGATCAACCCAGTCCCCCCCTGCGTGCTATCTATCCTGCTACTAGT
131 GGCAGAATGCGCAAGCCGAGGACCAACCCAGTCCCCCCCTGCGTGCTATCGATCCTGCTACTAGT
29388504 CT
196 CT
*
29388506 TGCTACTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-
1 TGCTACTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TG
* * ** * * *
29388570 GGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GAGCGCTTAGCCGGTCGGA
65 GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAACGGA-CGCTCAGCCGGCCAGA
* * * ** ** *
29388634 GCGGTAGAATGCGCAAGCCGGGGACCAGTCGGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
129 GAGGCAGAATGCGCAAGCCGAGGACCAACCCAGTCCCCCCCTGCGTGCTATCGATCCTGCT
29388695 GTCGCAAACC
Statistics
Matches: 160, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
196 2 0.01
197 157 0.98
198 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (197 bp):
TGCTACTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAACGGACGCTCAGCCGGCCAGAGA
GGCAGAATGCGCAAGCCGAGGACCAACCCAGTCCCCCCCTGCGTGCTATCGATCCTGCTACTAGT
CT
Found at i:29389066 original size:26 final size:26
Alignment explanation
Indices: 29389037--29389089 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29389027 CCGATCAGAT
*
29389037 CTTAGACTGCAAATGAACTCCGTATG
1 CTTAGACTGCAAATGAACTCCATATG
***
29389063 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGCAAATGAACTCCATATG
29389089 C
1 C
29389090 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCAAATGAACTCCATATG
Found at i:29389446 original size:26 final size:26
Alignment explanation
Indices: 29389417--29389468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29389407 CCGATCTGAT
29389417 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29389443 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29389469 TCGAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29389696 original size:158 final size:158
Alignment explanation
Indices: 29389443--29390100 Score: 572
Period size: 158 Copynumber: 4.2 Consensus size: 158
29389433 ACTCCGTATG
* * * * * *
29389443 CTTAGAC-ATGGAATGAACTCCGTATGTCGAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * *
29389507 CCGATCGGAGAGGTAGAATGCACGAGCCGGGGATCGACCCCATCCCCCCTGCGTACTATCGATCC
65 CCGACCGGAGAGGCATAATGCACGAGCCGGGGATCGACCCCATCCCCCTTGCGTGCTGTCGATCC
* *
29389572 TGCTGCCACAACCATTGGTCCGGTCCGAT
130 TGCTGCCACAACCATCGGTCCAGTCCGAT
* * ***
29389601 TTTAGACTAGGAATGATCTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * * * * *
29389666 CAACCGGAGAGGCATAATGCGCGAGCCGGGGACCAACCCCATTCCCCTTACGTGCTGTTGATCCT
66 CGACCGGAGAGGCATAATGCACGAGCCGGGGATCGACCCCATCCCCCTTGCGTGCTGTCGATCCT
* *
29389731 ACTGCCACAACCCTCGGTCCAGTCCGAT
131 GCTGCCACAACCATCGGTCCAGTCCGAT
* *
29389759 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * * * * * * * *
29389824 TGGCCGGAGAGGCATAATGCACAAGCTGAGGATTGGCCCGATCCCCCTTGCGTGCTGTCGGTCCC
66 CGACCGGAGAGGCATAATGCACGAGCCGGGGATCGACCCCATCCCCCTTGCGTGCTGTCGATCCT
* * * * **
29389889 GCTGCCACAACCCTCGGCCCA-ACTAGGG
131 GCTGCCACAACCATCGGTCCAGTC-CGAT
* * * * * *
29389917 CTTACAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCCCTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
** * * *** *** * ** *
29389981 CCGGTCAGAGAGGCAGAATGCGTAAATTGGGGATCGGCCCGGTCCCCAC-TGCGTGCTGTTGATC
65 CCGACCGGAGAGGCATAATGCACGAGCCGGGGATCGACCCCATCCCC-CTTGCGTGCTGTCGATC
* * * **
29390045 CTGCTGCCGCAACGC-T-GGTTCGGTTGGAT
129 CTGCTGCCACAAC-CATCGGTCCAGTCCGAT
* *
29390074 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCATATGC
29390101 TTAGACTAGG
Statistics
Matches: 404, Mismatches: 89, Indels: 15
0.80 0.18 0.03
Matches are distributed among these distances:
157 29 0.07
158 372 0.92
159 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
CGACCGGAGAGGCATAATGCACGAGCCGGGGATCGACCCCATCCCCCTTGCGTGCTGTCGATCCT
GCTGCCACAACCATCGGTCCAGTCCGAT
Found at i:29390115 original size:26 final size:26
Alignment explanation
Indices: 29390074--29390126 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29390064 TCGGTTGGAT
29390074 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29390100 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
29390126 C
1 C
29390127 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29390544 original size:26 final size:26
Alignment explanation
Indices: 29390515--29390570 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
29390505 CCGATCAGAT
*
29390515 CTTAGACTATGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
* * * *
29390541 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
29390567 CTTA
1 CTTA
29390571 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:29392451 original size:26 final size:26
Alignment explanation
Indices: 29392401--29392451 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29392391 TGGTTCAATC
**
29392401 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
29392427 TTAGACTGGGAATGAATTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
29392452 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:29393075 original size:317 final size:314
Alignment explanation
Indices: 29392427--29393080 Score: 754
Period size: 317 Copynumber: 2.1 Consensus size: 314
29392417 CTCTGTATGG
* *
29392427 TTAGACTGGGAATGAATTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTGAGCC
1 TTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACACTGAGCC
* * ** * *
29392492 GGTCGGAGAGGTTTAATGCACAAGTCAGGGATCGACCCGATCCCCTCTACGTGCTACCGATCCTG
65 GATCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCTCTACGTGCTACCGATCCCG
* *
29392557 CTGCCACAACCCCCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
130 CTGCCACAACCCCCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * **
29392622 ATGAAATAAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGTACAAGTCGGGGACCGGCTC
195 ACGAAACAAGCGTGCGCGCGCTCAACCGATCGAAGAGGCAGAATGCACAAGCCAAGGACCGGCTC
* * *** *
29392687 GATCCCCCTTGCATGCTGTTGATACTGCTACCGCAACCCTCGGTCCAGTCTGATC
260 GATCCCCCCTACATGCTGCCAATACTACTACCGCAACCCTCGGTCCAGTCTGATC
* * * * *
29392742 TTAGACTGGAAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCGTTCAGG-CACTGAGC
1 TTAGACTGG-AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGACACTGAGC
* * * * * * * *
29392806 CGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCTTTGCGTGCTATCGGTCC
64 CGATCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCC-CTCTACGTGCTACCGATCC
** *
29392871 CGCTGCCACAACCGTCAGTCCGGCTGGGGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAA
128 CGCTGCCACAACCCCCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * ** *
29392936 CCCACGAAACAGGTGTGCGCGCGCTCAGCCGGTCGAAGAGGCAGAATGCGTAAGCCAAGGATCGG
193 -CCACGAAACAAGCGTGCGCGCGCTCAACCGATCGAAGAGGCAGAATGCACAAGCCAAGGACCGG
* * ** **
29393001 C-CAGATCCCCCCTACATGCTGCCAATCCTATTGTCGCAACCCTCGGTCTGGTCTGATC
257 CTC-GATCCCCCCTACATGCTGCCAATACTACTACCGCAACCCTCGGTCCAGTCTGATC
29393059 TTAGACTAGGAATGAACTCCAT
1 TTAGACT-GGAATGAACTCCAT
29393081 TTGCTTAGAC
Statistics
Matches: 279, Mismatches: 54, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
314 2 0.01
315 87 0.31
316 77 0.28
317 111 0.40
318 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (314 bp):
TTAGACTGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACACTGAGCCG
ATCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCTCTACGTGCTACCGATCCCGC
TGCCACAACCCCCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCA
CGAAACAAGCGTGCGCGCGCTCAACCGATCGAAGAGGCAGAATGCACAAGCCAAGGACCGGCTCG
ATCCCCCCTACATGCTGCCAATACTACTACCGCAACCCTCGGTCCAGTCTGATC
Found at i:29394171 original size:26 final size:27
Alignment explanation
Indices: 29394121--29394178 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
29394111 CCGGTTCGAT
* **
29394121 CTTAGACTGGGAATGAACTTTGTATG-
1 CTTAGAATGGGAATGAACTCCGTATGC
*
29394147 CTTAGAATGGGGATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
29394174 CTTAG
1 CTTAG
29394179 TCAACTCACG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (27 bp):
CTTAGAATGGGAATGAACTCCGTATGC
Found at i:29394703 original size:159 final size:155
Alignment explanation
Indices: 29394358--29395170 Score: 492
Period size: 159 Copynumber: 5.1 Consensus size: 155
29394348 TCCGTATGCT
* * * *
29394358 TAGACATGCAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGTGCTCAATCG
1 TAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGTGCTCAACCG
* * * *
29394423 AATGGAGAGGCAGAATGTGCAAGTCAGGGATCGACCCGGTCCCCCTGTGTGCTACCAATCCTGCT
64 AATGGAGAGGCAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCTCTGTGCTACCAATCCTGCT
* * *
29394488 ACCGCAACCCTCGGTCCGGTCTGATCC
129 ACCACAACCCTCGGTCCGGTCTGAGCA
* * * * * *
29394515 TAGACTGGGAATGAATTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGATGCTGAGCCG
1 TAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGG-TGCTCAACCG
*** * *
29394580 -ATCGGAGAGGTTTAATGCGTAAGTCAAGGATCGACCCGATCCCCCTCTACGTGCTACCGATCCT
64 AAT-GGAGAGGCAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCTCT--GTGCTACCAATCCT
* * *
29394644 GCTGCCACAACCCTTGGTCCGG-CTGGGGCA
126 GCTACCACAACCCTCGGTCCGGTCT-GAGCA
* * *
29394674 TAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGG-GCGCCGAACC
1 TAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGTGC-TC-AACC
* * * ** * * * * * * *
29394738 G-ATAGAAGAGGCAGAATGTGCAAGCCGGGGACCGGCCAGGTCCCCC-CTGCATGCTATCGATCT
63 GAAT-GGAGAGGCAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCTCTG--TGCTACCAATCC
* * * * * *
29394801 TACTACCGCAACCCTCAGTCCGGTCTAATCT
125 TGCTACCACAACCCTCGGTCCGGTCTGAGCA
* * * * * * * *
29394832 TAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGAGCGCTGACCCG
1 TAGAATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG-GTGCTCAACCG
* * * * ** * * ** ** *
29394897 -GTCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCTCTCTACGTGCTGTCGGTCCC
64 AAT-GGAGAGGCAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCTCT--GTGCTACCAATCCT
* * * * *
29394961 ACTACCACAACCGTCGGTCTGG-CTGGGGCT
126 GCTACCACAACCCTCGGTCCGGTCT-GAGCA
* * * * * * * *
29394991 TGGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGCTGCTCAGCT
1 T-AGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGG-TGCTCAACC
* * * * * *
29395056 G-GTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCCACCAATCC
63 GAAT-GGAGAGGCAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCTCT--GTGCTACCAATCC
* ** * *
29395119 TACTACCGTAACCCTCGGTCCGGTCTGATCT
125 TGCTACCACAACCCTCGGTCCGGTCTGAGCA
*
29395150 TAGACTGGGAATGAACTCCGT
1 TAGAAT-GGAATGAACTCCGT
29395171 TTGCTTAGAC
Statistics
Matches: 513, Mismatches: 119, Indels: 47
0.76 0.18 0.07
Matches are distributed among these distances:
156 6 0.01
157 93 0.18
158 137 0.27
159 184 0.36
160 89 0.17
161 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
TAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGTGCTCAACCGAA
TGGAGAGGCAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCTCTGTGCTACCAATCCTGCTAC
CACAACCCTCGGTCCGGTCTGAGCA
Found at i:29394947 original size:317 final size:315
Alignment explanation
Indices: 29394358--29395170 Score: 957
Period size: 317 Copynumber: 2.6 Consensus size: 315
29394348 TCCGTATGCT
* * * * * *
29394358 TAGACATGCAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGTGCTCAATCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAC-GGCGCTCAACCG
* * * * *
29394423 AATGGAGAGGCAGAATGTGCAAGTCAGGGATCGACCCGGT-CCCCCTGTGTGCTACCAATCCTGC
65 -ATAGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTACCAATCCTAC
* * *
29394487 TACCGCAACCCTCGGTCCGGTCTGATCCTAGACTGGGAATGAATTCCATATGCCTAAGTCAACCC
129 TACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * ** * *
29394552 ACGAAACGAGCGTACGGATGCTGAGCCGATCGGAGAGGTTTAATGCGTAAGTCAAGGATCGACCC
194 ACGAAACAAGCGTACGGACGCTGACCCGATCGAAGAGGCATAATGCGCAAGCCAAGGATCGACCC
** * *
29394617 GATCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTTGGTCCGGCTGGGGCA
259 GATCCCCCTCTACGTGCTACCGATCCCACTACCACAACCCTCGGTCCGGCTGGGGCA
* *
29394674 TAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGC-CGAACC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAC-GGCGCTC-AACC
* * * * * * *
29394738 GATAGAAGAGGCAGAATGTGCAAGCCGGGGACCGGCCAGGTCCCCCCTGCATGCTATCGATCTTA
64 GATAG-AGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTACCAATCCTA
* * *
29394803 CTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACC
128 CTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * **
29394868 CATGAAACAAGCGTTC-GAGCGCTGACCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGAC
193 CACGAAACAAGCGTACGGA-CGCTGACCCGATCGAAGAGGCATAATGCGCAAGCCAAGGATCGAC
* * ** * * * *
29394932 CCGGTCCCTCTCTACGTGCTGTCGGTCCCACTACCACAACCGTCGGTCTGGCTGGGGCT
257 CCGATCCCCCTCTACGTGCTACCGATCCCACTACCACAACCCTCGGTCCGGCTGGGGCA
* * * * * * *
29394991 TGGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGCTGCTCAGCT
1 T-AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGC-GCTCAACC
* * * *
29395056 GGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCCACCAATCCTA
64 GAT-AGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTACCAATCCTA
*
29395121 CTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
128 CTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
29395171 TTGCTTAGAC
Statistics
Matches: 413, Mismatches: 76, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
315 4 0.01
316 86 0.21
317 175 0.42
318 145 0.35
319 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (315 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGCGCTCAACCGA
TAGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTACCAATCCTACTA
CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACAAGCGTACGGACGCTGACCCGATCGAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGA
TCCCCCTCTACGTGCTACCGATCCCACTACCACAACCCTCGGTCCGGCTGGGGCA
Found at i:29396167 original size:26 final size:26
Alignment explanation
Indices: 29396126--29396178 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29396116 TCGGTTCGAT
*
29396126 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29396152 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
29396178 C
1 C
29396179 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29396303 original size:15 final size:15
Alignment explanation
Indices: 29396283--29396315 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
29396273 CCTCCCTGCG
29396283 TGCTGGTCCTTTTGC
1 TGCTGGTCCTTTTGC
29396298 TGCTGGTCCTTTTGC
1 TGCTGGTCCTTTTGC
29396313 TGC
1 TGC
29396316 AACCCTCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.27, G:0.27, T:0.45
Consensus pattern (15 bp):
TGCTGGTCCTTTTGC
Found at i:29396374 original size:26 final size:26
Alignment explanation
Indices: 29396336--29396388 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29396326 CCGGTCCGAT
29396336 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29396362 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29396388 C
1 C
29396389 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29397163 original size:169 final size:171
Alignment explanation
Indices: 29396741--29397225 Score: 464
Period size: 169 Copynumber: 2.8 Consensus size: 171
29396731 GTGCTACCGA
* * * * * * *
29396741 TCCTGCTGTCGCAACCCTCGGTCTGGTCTGATGTTTTGACTGGGGATGAACTCTATATGCCTAAG
1 TCCTGCTGCCGCAACCCTCGGTCCGATCTGAT-CTTAGACTGGGAATGAACTCCATATGCCTAAG
* * * * * *
29396806 TCAACCCATGAAACAAGCATACGGGGGCTCAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGA
65 TCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGA
* * *
29396871 TTAGCCCGATCCCCCCTTTGCGTGCTGTCAATCTCGCTTTCGG
130 TGAGCCCGATCCCCCC-TTACGTGCTATCAATCTCGCTTTCGG
* * * ** * * *
29396914 TCCTGCTGCCACAACCCACAGTCCGA-CTAGGGCTTAGACAT-GAAATGGACTCCGTATGCCTAA
1 TCCTGCTGCCGCAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCTAA
* * * *
29396977 GCCAACCCATGAAACGAGCATGCGGGCACTCAGCCGGTC-GAGAGGTAGAATGCACAAGTCAGGG
64 GTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGG
*
29397041 ATCGA-CCCGGTCCCCCC-TACGTGCTATCAATC-CTGCTGTT-GG
129 AT-GAGCCCGATCCCCCCTTACGTGCTATCAATCTC-GCT-TTCGG
* *
29397083 TCCTGCTGCCGCAACCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGT
1 TCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGT
* ** ** * * * *
29397148 CAACACACAAAACGAGTGTGCGGGCGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCC-GAGGA
66 CAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAG-GGA
* *
29397212 TCAGCTCGATCCCC
130 TGAGCCCGATCCCC
29397226 TTCTGCGTGC
Statistics
Matches: 248, Mismatches: 54, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
168 2 0.01
169 99 0.40
170 33 0.13
171 33 0.13
172 59 0.24
173 22 0.09
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (171 bp):
TCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGT
CAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGAT
GAGCCCGATCCCCCCTTACGTGCTATCAATCTCGCTTTCGG
Found at i:29397446 original size:159 final size:158
Alignment explanation
Indices: 29397088--29397453 Score: 357
Period size: 159 Copynumber: 2.3 Consensus size: 158
29397078 GTTGGTCCTG
* * * * *
29397088 CTGCCGCAACCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACA
1 CTGCCACAACCCTCGATCC-ATCTGATCTTAGACTGGGAATGAACTCCCTATACCTAAGCCAACA
* * * * * *
29397153 CACAAAACGAGTGTGCGGGCGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCT
65 CACAAAACGAGCGTACGGGCGCTCAGACGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCC
** *
29397218 CGATCCCCTTCTGCGTGCTGTCGGTCCCA
130 CGATCCCCTTCTGCGTGCTACCGATCCCA
* * **
29397247 CTGCCACAACCCTTGATCCAACTGGGGCTTAGACAT-GGAATGAACTCCCTATACCTAAGCCAAC
1 CTGCCACAACCCTCGATCCATCT-GATCTTAGAC-TGGGAATGAACTCCCTATACCTAAGCCAAC
* * * * * *
29397311 CCACGAAACGGGCGTACGGGTGCTCAGACGGTCGGAGAGGTAGAATGCGCAAGCCG-GAGATC-G
64 ACACAAAACGAGCGTACGGGCGCTCAGACGATCGGAGAGGCAGAATGCGCAAGCCGAG-GATCAG
**
29397374 ACCCGAT-CCC-TCTTGCGTGCTACCGATCCTG
128 -CCCGATCCCCTTC-TGCGTGCTACCGATCCCA
**
29397405 CT-CTCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGGAATGAACTCC
1 CTGC-CACAACCCTCGATCCA-TCTGATCTTAGACT-GGGAATGAACTCC
29397454 GTATGCTTAG
Statistics
Matches: 166, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.02
158 44 0.27
159 117 0.70
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
CTGCCACAACCCTCGATCCATCTGATCTTAGACTGGGAATGAACTCCCTATACCTAAGCCAACAC
ACAAAACGAGCGTACGGGCGCTCAGACGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCC
GATCCCCTTCTGCGTGCTACCGATCCCA
Found at i:29397483 original size:26 final size:27
Alignment explanation
Indices: 29397432--29397485 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
29397422 CCAGTCTGAT
*
29397432 CTTAGACTGGGGAATGAACTCCGTATG
1 CTTAGACTAGGGAATGAACTCCGTATG
*
29397459 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACTAGGGAATGAACTCCGTATG
29397485 C
1 C
29397486 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGGAATGAACTCCGTATG
Found at i:29398527 original size:26 final size:26
Alignment explanation
Indices: 29398498--29398550 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29398488 CTGGTTTGAT
* *
29398498 CTTAGATTGG-GAATGAACTCTGTATG
1 CTTAGACTGGTGAA-GAACTCCGTATG
29398524 CTTAGACTGGTGAAGAACTCCGTATG
1 CTTAGACTGGTGAAGAACTCCGTATG
29398550 C
1 C
29398551 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTGAAGAACTCCGTATG
Found at i:29398723 original size:26 final size:26
Alignment explanation
Indices: 29398694--29398772 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
29398684 CCGATCTGAT
*
29398694 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29398720 CTTAGACATGGAATGAACTCCGTACG
1 CTTAGACATGGAATGAACTCCGTATG
29398746 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29398772 C
1 C
29398773 CTAGGCCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29399254 original size:26 final size:26
Alignment explanation
Indices: 29399218--29399270 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29399208 CTGGTCTGAT
*
29399218 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
29399244 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
29399270 C
1 C
29399271 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:29399439 original size:184 final size:185
Alignment explanation
Indices: 29399060--29399799 Score: 744
Period size: 184 Copynumber: 4.0 Consensus size: 185
29399050 TCCAACTTGG
* * * * *
29399060 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCAACGAAACGGGCGTGCGGGCGATCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * *
29399125 TTGGTCGGAGAGGCAGAATGTGCAAGTCGGGAATCGGCC-CAGT-GCCCCTGCATGCTACCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGA-TCCCCCCTGCATGCTATCGATC
* * *
29399188 CTGCTGCTGCAACCTTCAATCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGCCGCAACCCTCAGTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * **
29399243 GCTTAGAC-TGGGGATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTTTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
29399307 GCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCTGATCCCCCTTGCATGCTATCGATC
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCATGCTATCGATC
* * * * *
29399372 CTGTTGCCGTAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGCACTCCATAT
130 CTGCTGCCGCAACCCTCAGTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
29399427 GCTTAGAC-TGGGGATGAACTTCGTATGCGTAAGACAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** *
29399491 ACCG-GCTGGAGAGGCAGAATGCGCAAGCTGGCGATCGGCCTGGTCCCCCCCCTGTGTGCTGTCG
65 GCCGATC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGAT--CCCCCCTGCATGCTATCG
* * *** *
29399555 ATCCTGCTGTCGTAACCCTCAGTC-CAATCTGATCTTAGACTGGGAATGAACTTCGTAT
127 ATCCTGCTGCCGCAACCCTCAGTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
29399613 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
29399678 -CTAGCCAGAGAGGTAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCTCCTGCGTCCTGTCGAT
66 CCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCC-CCTGCATGCTATCGAT
* * * *
29399742 CTTGCTACCGCAACCCTCAGTCTGG-TCCGATCTTAGACTGGGAATGAACTTCGTAT
129 CCTGCTGCCGCAACCCTCAGTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTAT
29399798 GC
1 GC
29399800 CTAAGTCAAC
Statistics
Matches: 460, Mismatches: 84, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
182 1 0.00
183 88 0.19
184 158 0.34
185 69 0.15
186 142 0.31
187 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCATGCTATCGATCC
TGCTGCCGCAACCCTCAGTCTGGTTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:29399626 original size:26 final size:26
Alignment explanation
Indices: 29399588--29399640 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29399578 CCAATCTGAT
*
29399588 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29399614 CTTAGACAT-GGAATGTACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29399640 C
1 C
29399641 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29400107 original size:26 final size:26
Alignment explanation
Indices: 29400078--29400130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29400068 CCGGTTTGAT
29400078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29400104 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29400130 C
1 C
29400131 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29400462 original size:26 final size:26
Alignment explanation
Indices: 29400433--29400485 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29400423 CCGGCCCGAT
*
29400433 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACGCCGTATG
*
29400459 CTTAGGCATGGAATGAACGCCGTATG
1 CTTAGACATGGAATGAACGCCGTATG
29400485 C
1 C
29400486 CTAAGCCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACGCCGTATG
Found at i:29400883 original size:26 final size:26
Alignment explanation
Indices: 29400845--29400897 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29400835 GGCTCAAACT
29400845 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
29400871 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
29400897 C
1 C
29400898 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29402065 original size:158 final size:158
Alignment explanation
Indices: 29401761--29402119 Score: 445
Period size: 158 Copynumber: 2.3 Consensus size: 158
29401751 GCTTATACAT
* * *
29401761 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCTTTAGCTGATCGAAGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGCCTTGAGCCGATCGAAGA
* ** * ** * *
29401826 GGCAGAATGCGTAAGTCGGGGACCGACCCGGTCCCCTCTGTGTGCTATCGATCTTACTGTCGTAA
66 GGCAGAATGCGTAAGCCGAAGACCGACCCGGTCCCCCCTGCATGCTATCGATCCTACTGTCGGAA
29401891 CCCTCAGGTCCTGTCTGATCTTAGACTG
131 CCCTCAGGTCCTGTCTGATCTTAGACTG
* * * * * *
29401919 GGAATAAACTCCTTATGCCTATGTCAACCCACGAAACGAGCGTACGGGCAC-TGAGCCGGTCGGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATAC-GGC-CTTGAGCCGATCGAA
* * * * * *
29401983 GAGGTAGAATGCTTAAGCCGAAGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGTTGG
64 GAGGCAGAATGCGTAAGCCGAAGACCGACCCGGTCCCCCCTGCATGCTATCGATCCTACTGTCGG
29402048 AACCCTCA-GT-CTGGTCTGATCTTAGACTG
129 AACCCTCAGGTCCT-GTCTGATCTTAGACTG
* *
29402077 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCAT
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
29402120 GCAAGTGCTG
Statistics
Matches: 169, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 2 0.01
158 95 0.56
159 71 0.42
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGCCTTGAGCCGATCGAAGA
GGCAGAATGCGTAAGCCGAAGACCGACCCGGTCCCCCCTGCATGCTATCGATCCTACTGTCGGAA
CCCTCAGGTCCTGTCTGATCTTAGACTG
Found at i:29402167 original size:158 final size:155
Alignment explanation
Indices: 29401761--29402271 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 155
29401751 GCTTATACAT
* * *
29401761 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT-ACGGCCTTTAGCTGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCAAGG-C-TGAGCCGATCG-AG
* * * * * * *
29401825 AGGCAGAATGCGTAAGTCGGGGACCGACCCGGTCCCCTCTGTGTGCTATCGATCTTACTGTCGTA
63 AGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCA
29401890 ACCCTCAGGTCCT-GTCTGATCTTAGACTG
128 ACCCTCA-GT-CTGGTCTGATCTTAGACTG
* * * * * * *
29401919 GGAATAAACTCCTTATGCCTATGTCAACCCACGAAACGAGCGT-ACGGGCACTGAGCCGGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCA-AGG--CTGAGCCGATC-GA
* * * * * * *
29401983 GAGGTAGAATGCTTAAG-CCGAAGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGTTG
62 GAGGCAGAATGCGTAAGTCAG-GGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCG
*
29402047 GAACCCTCAGTCTGGTCTGATCTTAGACTG
126 CAACCCTCAGTCTGGTCTGATCTTAGACTG
* * *
29402077 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCAAGTGCTGAGCCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT-CAAG-GCTGAGCCGATC-GAG
* * * * * * * *
29402142 AGGCATAATGCGCAAGTCAGGGATCGGCCCGATCCCCCTTTGCGTGCTGTCGATCCTCCTGCCAC
63 AGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCCTACTGTCGC
* * **
29402207 AACCCTCAATCCGGT-TGGGGCTTAGACAT-
127 AACCCTCAGTCTGGTCT-GATCTTAGAC-TG
* ** *
29402236 GGAATGAACTCCCTACACCTAAGCCAACCCATGAAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
29402272 TGGGTGTGCG
Statistics
Matches: 286, Mismatches: 55, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 137 0.48
159 142 0.50
160 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (155 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCAAGGCTGAGCCGATCGAGAGG
CAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACC
CTCAGTCTGGTCTGATCTTAGACTG
Found at i:29402413 original size:26 final size:25
Alignment explanation
Indices: 29402384--29402462 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
29402374 CTGGTCCGAT
29402384 CTTAGATTGAGAATGAACTCTGTATG
1 CTTAGATTG-GAATGAACTCTGTATG
29402410 CTTAGATTGGAGATGAACTCTGTATG
1 CTTAGATTGGA-ATGAACTCTGTATG
* * *
29402436 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGA-TTGGAATGAACTCTGTATG
29402462 C
1 C
29402463 CTAAGTCAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 2 0.04
26 43 0.90
27 3 0.06
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (25 bp):
CTTAGATTGGAATGAACTCTGTATG
Found at i:29404216 original size:11 final size:11
Alignment explanation
Indices: 29404197--29404229 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
29404187 CGGTTAGGCT
29404197 CTCCGACGATG
1 CTCCGACGATG
*
29404208 CTTCGACGATG
1 CTCCGACGATG
29404219 CTCCGACGATG
1 CTCCGACGATG
29404230 GTGCCCCGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Done.