Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 314 of 402
Found at i:29404891 original size:158 final size:160
Alignment explanation
Indices: 29404546--29404950 Score: 421
Period size: 158 Copynumber: 2.6 Consensus size: 160
29404536 TGTGGCCTGG
* * * *
29404546 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCTGT-TCCACTAGGGCTTAGACTTGG
1 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGCACTAGAGCTTAGACTGGG
* *
29404610 AATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCTCTTAGCCGATCGGAGAG
66 AATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCTCTGAGCCGATCAGAGAG
* **
29404675 GCAAAATGCGCAAGCCGAGGCTCGGCCCAA
131 GCAAAATGCGCAAGCCGAGGATAAGCCCAA
* * * ** * ** * *
29404705 TCCCTC-CTGCGTACTGTCTATCTTGCTGCCGCAACCCTCGGTCTGGTC-CGATCTTAGACTGGG
1 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGCACTAGAGCTTAGACTGGG
* * *
29404768 AATGAACTCCGTATGCCTAAGCCAATGC-ACGAAACGAGGGTGCGGG-TGCTGAGCCGATCAGAG
66 AATGAACTCCCTATGCCTAAGCCAA-CCAACGAAACGAGCGTGCGGGCT-CTGAGCCGATCAGAG
* * * * *
29404831 AGGTATAATGCG-TAGTCGAGGATAAGCCCGA
129 AGGCAAAATGCGCAAGCCGAGGATAAGCCCAA
* * * * *
29404862 TCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCATAACCCTCGGTCTG-ACTGGGGCTTAGACAT-G
1 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGCACTAGAGCTTAGAC-TGG
**
29404925 GAATGAACTCCCTATGTGTAAGCCAA
65 GAATGAACTCCCTATGCCTAAGCCAA
29404951 AATGTGAAAT
Statistics
Matches: 197, Mismatches: 43, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 20 0.10
158 168 0.85
159 9 0.05
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.21
Consensus pattern (160 bp):
TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGCACTAGAGCTTAGACTGGG
AATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCTCTGAGCCGATCAGAGAG
GCAAAATGCGCAAGCCGAGGATAAGCCCAA
Found at i:29404999 original size:158 final size:158
Alignment explanation
Indices: 29404546--29404999 Score: 413
Period size: 158 Copynumber: 2.9 Consensus size: 158
29404536 TGTGGCCTGG
* *
29404546 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCTGT-TCCACTAGGGCTTAGACTTGG
1 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCT-GACTAGGGCTTAGAC-TGG
* * *
29404610 AATGAACTCCCTATGCCTAAGCCAACCAA--CGAAACGAGCGTGCGGGCTCTTAGCCGATCGGAG
64 AATGAACTCCCTATGCCTAAGCCAA--AATGCGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAG
* **
29404673 AGGCAAAATGCGCAAGCCGAGGCTCGGCCCAA
127 AGGCAAAATGCGCAAGCCGAGGATAAGCCCAA
* * * ** * * * **
29404705 TCCCTC-CTGCGTACTGTCTATCTTGCTGCCGCAACCCTCGGTCTG-GTCCGATCTTAGACTGGG
1 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGACT-AGGGCTTAGACT-GG
* * * *
29404768 AATGAACTCCGTATGCCTAAGCC--AATGCACGAAACGAGG-GTGCGGGTGCTGAGCCGATCAGA
64 AATGAACTCCCTATGCCTAAGCCAAAATG--CGAAACG-GGCGTGCGGGCGCTCAGCCGATCGGA
* * * * *
29404830 GAGGTATAATGCG-TAGTCGAGGATAAGCCCGA
126 GAGGCAAAATGCGCAAGCCGAGGATAAGCCCAA
* * * *
29404862 TCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCATAACCCTCGGTCTGACTGGGGCTTAGACATGGA
1 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGACTAGGGCTTAGAC-TGGA
** * * * *
29404927 ATGAACTCCCTATGTGTAAGCCAAAATGTGAAATGGGCGTGCAGGCGCTCAGCCGGTCGGAGAGG
65 ATGAACTCCCTATGCCTAAGCCAAAATGCGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGG
*
29404992 CAGAATGC
130 CAAAATGC
29405000 ATAAGTCGGG
Statistics
Matches: 230, Mismatches: 51, Indels: 29
0.74 0.16 0.09
Matches are distributed among these distances:
154 2 0.01
157 22 0.10
158 193 0.84
159 9 0.04
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCTGACTAGGGCTTAGACTGGAA
TGAACTCCCTATGCCTAAGCCAAAATGCGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGC
AAAATGCGCAAGCCGAGGATAAGCCCAA
Found at i:29405663 original size:159 final size:157
Alignment explanation
Indices: 29405308--29405810 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 157
29405298 AACTCCGTAC
* * *
29405308 GCTTAGACATGGAATGAACTCTGTATGCCTGAGCCAACCCATGAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
29405373 CCTACTGGAGAGACAGAATGCGCAAGTC-AGAGATC-AGCCCAGTCCCCCCTGCGTGTTGTC-GA
66 CCAACTGGAGAGGCAGAATGCGCAAGCCAAG-GATCGA-CACGGTCCCCCCTGCGTGCTACCAG-
* * *
29405435 TCCTGCTGCTGAAACCCTCGGTTTGGTCTGA
128 TCCTGCTGC-CAAACCCTCGGTCTAGTCTGA
* * * * * *
29405466 TCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * ** *
29405530 GCCGACCGGAGAGGCATAATGCGCAAGCCAAGGATCGACTTGGTCCCCCTCTGCATGCTACCAGT
65 GCCAACTGGAGAGGCAGAATGCGCAAGCCAAGGATCGACACGGTCCCCC-CTGCGTGCTACCAGT
* *
29405595 CCTGCTGCCACAACCCTTGGTCTAG-CTGGG
129 CCTGCTGCCA-AACCCTCGGTCTAGTCT-GA
* * * *
29405625 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGAGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
29405690 CCAACTGGAGAGGTAGAACGCGCAAGCCAGGGATCGACACGGTCCCCCCTACGTGCTACCAATCC
66 CCAACTGGAGAGGCAGAATGCGCAAGCCAAGGATCGACACGGTCCCCCCTGCGTGCTACCAGTCC
*** *
29405755 TGCTGTTGTAACCCTCGGTCCAGTCTGA
131 TGCTG-CCAAACCCTCGGTCTAGTCTGA
*
29405783 TCTTAGACATGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
29405811 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 55, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 150 0.54
159 127 0.45
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCAACTGGAGAGGCAGAATGCGCAAGCCAAGGATCGACACGGTCCCCCCTGCGTGCTACCAGTCC
TGCTGCCAAACCCTCGGTCTAGTCTGA
Found at i:29406518 original size:26 final size:26
Alignment explanation
Indices: 29406480--29406532 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29406470 GGCTCAAACT
29406480 CTTAGACTAGGAATGAACTT-CGTATG
1 CTTAGACTAGGAATGAA-TTCCGTATG
29406506 CTTAGAC-ATGGAATGAATTCCGTATG
1 CTTAGACTA-GGAATGAATTCCGTATG
29406532 C
1 C
29406533 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATTCCGTATG
Found at i:29407061 original size:26 final size:26
Alignment explanation
Indices: 29407032--29407098 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
29407022 TACACTGGGA
*
29407032 ATGAACTTCGTATGCTTAGACTAGGG
1 ATGAACTCCGTATGCTTAGACTAGGG
* *
29407058 ATGAACTCCGTATTCTTAGACTGGGG
1 ATGAACTCCGTATGCTTAGACTAGGG
29407084 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
29407099 CTAAGCCAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGACTAGGG
Found at i:29408042 original size:26 final size:26
Alignment explanation
Indices: 29408013--29408065 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29408003 CCGATCCGAT
29408013 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
** *
29408039 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
29408065 C
1 C
29408066 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:29408419 original size:26 final size:26
Alignment explanation
Indices: 29408381--29408433 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29408371 TCAGTCCAAT
*
29408381 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29408407 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
29408433 C
1 C
29408434 CTAAGCCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29408872 original size:26 final size:26
Alignment explanation
Indices: 29408843--29408895 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29408833 CCGGTCTGAT
29408843 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
29408869 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29408895 C
1 C
29408896 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29409735 original size:26 final size:26
Alignment explanation
Indices: 29409706--29409758 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29409696 TCCGATCTGA
29409706 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
* * *
29409732 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
29409758 C
1 C
29409759 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:29410347 original size:14 final size:14
Alignment explanation
Indices: 29410316--29410372 Score: 64
Period size: 14 Copynumber: 4.0 Consensus size: 14
29410306 TTCTCTGTTA
29410316 ATATTTATATGTATT
1 ATATTTATAT-TATT
*
29410331 ATATTTATATAATT
1 ATATTTATATTATT
29410345 ATATATT-TATTATT
1 ATAT-TTATATTATT
29410359 ATA-TTATAATTATT
1 ATATTTAT-ATTATT
29410373 TTCTTTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
12 2 0.05
13 1 0.03
14 22 0.59
15 12 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
ATATTTATATTATT
Found at i:29410355 original size:25 final size:25
Alignment explanation
Indices: 29410321--29410371 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
29410311 TGTTAATATT
*
29410321 TATATGTATTA-TATTTATATAATTA
1 TATATGTATTATTATAT-TATAATTA
*
29410346 TATATTTATTATTATATTATAATTA
1 TATATGTATTATTATATTATAATTA
29410371 T
1 T
29410372 TTTCTTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TATATGTATTATTATATTATAATTA
Found at i:29410792 original size:26 final size:26
Alignment explanation
Indices: 29410760--29410813 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
29410750 TGGGAGTGAG
*
29410760 AAAAAATTTT-TAGAAATTTTTGGCGA
1 AAAAAATTTTCTAGAAATTTCTGG-GA
29410786 AAAAAATTTTCTAGAAATTTCTGGGA
1 AAAAAATTTTCTAGAAATTTCTGGGA
29410812 AA
1 AA
29410814 TTTCCAGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (26 bp):
AAAAAATTTTCTAGAAATTTCTGGGA
Found at i:29411404 original size:21 final size:22
Alignment explanation
Indices: 29411373--29411413 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
29411363 ATTTTTTATC
29411373 TTTATCTTATTTTTATTTTTGT
1 TTTATCTTATTTTTATTTTTGT
29411395 TTTA-CTTATTTTTATTTTT
1 TTTATCTTATTTTTATTTTT
29411414 TTTCTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (22 bp):
TTTATCTTATTTTTATTTTTGT
Found at i:29411508 original size:27 final size:27
Alignment explanation
Indices: 29411478--29411568 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
29411468 TCAAAAAAAT
29411478 ATTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTTGAGGAAAAGTTGAAAGTATCA
* * * * * **
29411505 ATTTTCCTTAGAAATAAATTTCAAA-AAAAA
1 ATTTT--TGAG-GA-AAAGTTGAAAGTATCA
29411535 GATTTTTGAGGAAAAGTTGAAAGTATCA
1 -ATTTTTGAGGAAAAGTTGAAAGTATCA
29411563 ATTTTT
1 ATTTTT
29411569 CTTAAAAATA
Statistics
Matches: 44, Mismatches: 14, Indels: 12
0.63 0.20 0.17
Matches are distributed among these distances:
27 19 0.43
28 3 0.07
29 6 0.14
30 3 0.07
31 13 0.30
ACGTcount: A:0.43, C:0.05, G:0.15, T:0.36
Consensus pattern (27 bp):
ATTTTTGAGGAAAAGTTGAAAGTATCA
Found at i:29411653 original size:60 final size:58
Alignment explanation
Indices: 29411470--29411748 Score: 443
Period size: 58 Copynumber: 4.7 Consensus size: 58
29411460 AATAAAAATC
*
29411470 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
* *
29411528 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC--A
*
29411589 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTCA
29411649 AAAAAAA-ATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
1 AAAAAAAGA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
* *
29411707 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
29411749 CTACACAAGA
Statistics
Matches: 206, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
58 94 0.46
59 9 0.04
60 48 0.23
61 48 0.23
62 7 0.03
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.34
Consensus pattern (58 bp):
AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
Found at i:29411686 original size:28 final size:28
Alignment explanation
Indices: 29411598--29411688 Score: 69
Period size: 28 Copynumber: 3.1 Consensus size: 28
29411588 AAAAAAAAGA
29411598 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
* * * **
29411626 TTTCCTTG-GAAATCAAAGTTTCAAA-AAAAAAT
1 TTT--TTGAG-GA--AAAG-TTGAAAGTATCAAT
29411658 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
29411686 TTT
1 TTT
29411689 CCTTAGAAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 16
0.63 0.14 0.23
Matches are distributed among these distances:
27 5 0.11
28 14 0.31
29 1 0.02
30 8 0.18
31 1 0.02
32 11 0.24
33 5 0.11
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:29411794 original size:6 final size:6
Alignment explanation
Indices: 29411783--29411811 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
29411773 CTTCCTTTCT
29411783 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
29411812 TCTTTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (6 bp):
ATTTTG
Found at i:29417109 original size:40 final size:41
Alignment explanation
Indices: 29416881--29417164 Score: 384
Period size: 41 Copynumber: 7.0 Consensus size: 41
29416871 GTCTAGGAGT
*
29416881 ATTTACGTTTCC-AAGTTCGT--TGCCTCTATTTAGAGGAGCA
1 ATTTAC-TTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
29416921 ATTTACTTTCC-AAGTTCGT--TGCCTCTGTTTAGAGGAGCT
1 ATTTACTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
29416960 CTTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
29417001 ATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGAAGCA
1 ATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
29417042 ATTTACTTTCCAAAGTCGTGGTACCTCTGTTTAAAGGAGCA
1 ATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
29417083 ATTTA-TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* * *
29417123 ATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 ATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
29417165 TTTGGTCAAA
Statistics
Matches: 223, Mismatches: 15, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
39 45 0.20
40 46 0.21
41 101 0.45
42 3 0.01
43 28 0.13
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (41 bp):
ATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
Found at i:29417190 original size:9 final size:8
Alignment explanation
Indices: 29417172--29417208 Score: 65
Period size: 8 Copynumber: 4.5 Consensus size: 8
29417162 AGCTTTGGTC
29417172 AAAAACAA
1 AAAAACAA
29417180 AAAAACAA
1 AAAAACAA
29417188 AAAAACAAA
1 AAAAAC-AA
29417197 AAAAACAA
1 AAAAACAA
29417205 AAAA
1 AAAA
29417209 TGACAATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 20 0.71
9 8 0.29
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAACAA
Found at i:29417193 original size:16 final size:17
Alignment explanation
Indices: 29417172--29417208 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
29417162 AGCTTTGGTC
29417172 AAAAAC-AAAAAAACAA
1 AAAAACAAAAAAAACAA
29417188 AAAAACAAAAAAAACAA
1 AAAAACAAAAAAAACAA
29417205 AAAA
1 AAAA
29417209 TGACAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAAAAACAA
Found at i:29417524 original size:14 final size:14
Alignment explanation
Indices: 29417493--29417549 Score: 64
Period size: 14 Copynumber: 4.0 Consensus size: 14
29417483 TTCTCTGTTA
29417493 ATATTTATATGTATT
1 ATATTTATAT-TATT
*
29417508 ATATTTATATAATT
1 ATATTTATATTATT
29417522 ATATATT-TATTATT
1 ATAT-TTATATTATT
29417536 ATA-TTATAATTATT
1 ATATTTAT-ATTATT
29417550 TTCTTTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
12 2 0.05
13 1 0.03
14 22 0.59
15 12 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
ATATTTATATTATT
Found at i:29417532 original size:25 final size:25
Alignment explanation
Indices: 29417498--29417548 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
29417488 TGTTAATATT
*
29417498 TATATGTATTA-TATTTATATAATTA
1 TATATGTATTATTATAT-TATAATTA
*
29417523 TATATTTATTATTATATTATAATTA
1 TATATGTATTATTATATTATAATTA
29417548 T
1 T
29417549 TTTCTTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TATATGTATTATTATATTATAATTA
Found at i:29418541 original size:27 final size:27
Alignment explanation
Indices: 29418511--29418567 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
29418501 ATTAGATTTA
29418511 TTTAATATT-TTTTATCTTTATCTTATT
1 TTTAATATTGTTTTA-CTTTATCTTATT
* * * *
29418538 TTTATTTTTGTTTTACTTTTTTTTATT
1 TTTAATATTGTTTTACTTTATCTTATT
29418565 TTT
1 TTT
29418568 TTCTTCTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (27 bp):
TTTAATATTGTTTTACTTTATCTTATT
Found at i:29418562 original size:21 final size:22
Alignment explanation
Indices: 29418527--29418567 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
29418517 ATTTTTTATC
29418527 TTTATCTTATTTTTATTTTTGT
1 TTTATCTTATTTTTATTTTTGT
*
29418549 TTTA-CTTTTTTTTATTTTT
1 TTTATCTTATTTTTATTTTT
29418568 TTCTTCTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTATCTTATTTTTATTTTTGT
Found at i:29418569 original size:29 final size:30
Alignment explanation
Indices: 29418536--29418597 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
29418526 CTTTATCTTA
*
29418536 TTTTTATT-TTTGTTTTACTTTT-TTTTATT
1 TTTTTATTCTTT-ATTTACTTTTATTTTATT
*
29418565 TTTTTCTTCTTTATTTACTTTTACTTTTATT
1 TTTTTATTCTTTATTTACTTTTA-TTTTATT
29418596 TT
1 TT
29418598 GTTTTATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 16 0.57
30 3 0.11
31 9 0.32
ACGTcount: A:0.11, C:0.08, G:0.02, T:0.79
Consensus pattern (30 bp):
TTTTTATTCTTTATTTACTTTTATTTTATT
Found at i:29418661 original size:27 final size:27
Alignment explanation
Indices: 29418631--29418721 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
29418621 TCAAAAAAAT
29418631 ATTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTTGAGGAAAAGTTGAAAGTATCA
* * * * * **
29418658 ATTTTCCTTAGAAATAAATTTCAAA-AAAAA
1 ATTTT--TGAG-GA-AAAGTTGAAAGTATCA
29418688 GATTTTTGAGGAAAAGTTGAAAGTATCA
1 -ATTTTTGAGGAAAAGTTGAAAGTATCA
29418716 ATTTTT
1 ATTTTT
29418722 TTTAAAAATA
Statistics
Matches: 44, Mismatches: 14, Indels: 12
0.63 0.20 0.17
Matches are distributed among these distances:
27 19 0.43
28 3 0.07
29 6 0.14
30 3 0.07
31 13 0.30
ACGTcount: A:0.43, C:0.05, G:0.15, T:0.36
Consensus pattern (27 bp):
ATTTTTGAGGAAAAGTTGAAAGTATCA
Found at i:29418701 original size:58 final size:59
Alignment explanation
Indices: 29418623--29419023 Score: 585
Period size: 58 Copynumber: 6.7 Consensus size: 59
29418613 AATAAAAATC
29418623 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTCA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTCA
* ** * *
29418681 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAATTTTCAAAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTC---A
* * * *
29418743 AAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTAAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAAGTTT-CA
29418804 AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTCA
1 AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTCA
* *
29418863 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAAGTTTC-A
*
29418924 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTGA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTCA
29418982 AAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
29419024 CTACACAAGA
Statistics
Matches: 312, Mismatches: 20, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
57 1 0.00
58 132 0.42
59 17 0.05
60 10 0.03
61 59 0.19
62 87 0.28
63 6 0.02
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (59 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTCA
Found at i:29418758 original size:120 final size:118
Alignment explanation
Indices: 29418623--29419023 Score: 619
Period size: 120 Copynumber: 3.4 Consensus size: 118
29418613 AATAAAAATC
* *
29418623 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTCAAAAAA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAA
* ** *
29418686 AAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAATTTTCAAAA
66 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC---A
* *
29418743 AAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTAAAAAAA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTT-CAAAAA
29418808 AATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
65 AA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
29418863 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC-AAAAA
*
29418928 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTGA
65 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
*
29418982 AAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
29419024 CTACACAAGA
Statistics
Matches: 263, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
118 1 0.00
119 90 0.34
120 112 0.43
121 3 0.01
122 3 0.01
123 11 0.04
124 43 0.16
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (118 bp):
AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAA
AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
Found at i:29418928 original size:182 final size:179
Alignment explanation
Indices: 29418623--29419023 Score: 648
Period size: 182 Copynumber: 2.2 Consensus size: 179
29418613 AATAAAAATC
29418623 AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAAA
1 AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAAA
** *
29418687 AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAATTTTCAAAAAAAAAAAGA
66 AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC-AAAAAAAAAAGA
*
29418752 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTAAA
130 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTAAA
29418804 AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAAA
1 AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAAA
** *
29418869 AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC-AAAAAAAAATA
66 AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTCAAAAAAAAAAGA
* *
29418933 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTGAA
130 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTAAA
*
29418983 AAAAAATAT-TTTTAG-GGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
29419024 CTACACAAGA
Statistics
Matches: 208, Mismatches: 10, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
177 26 0.12
178 5 0.02
179 14 0.07
180 3 0.01
181 55 0.26
182 98 0.47
183 7 0.03
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (179 bp):
AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAAA
AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCAAAAAAAAAAGAT
TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTAAA
Found at i:29419069 original size:6 final size:6
Alignment explanation
Indices: 29419058--29419086 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
29419048 CTTCCTTTCT
29419058 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
29419087 TCTTTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (6 bp):
ATTTTG
Found at i:29419702 original size:26 final size:26
Alignment explanation
Indices: 29419666--29419718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29419656 CCGATCCGAT
*
29419666 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29419692 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29419718 C
1 C
29419719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29420037 original size:26 final size:26
Alignment explanation
Indices: 29420008--29420060 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29419998 CCGGTTCGAT
29420008 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29420034 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29420060 C
1 C
29420061 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29420234 original size:26 final size:26
Alignment explanation
Indices: 29420205--29420255 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29420195 CGGTTTGATC
29420205 TTAGAC-TGGGAATGAACTCCGTATGA
1 TTAGACAT-GGAATGAACTCCGTATGA
*
29420231 TTAGACATGGAATGAACTTCGTATG
1 TTAGACATGGAATGAACTCCGTATG
29420256 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGA
Found at i:29420323 original size:196 final size:196
Alignment explanation
Indices: 29419997--29420364 Score: 540
Period size: 196 Copynumber: 1.9 Consensus size: 196
29419987 CAACCTTCGA
* *
29419997 TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
1 TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCC
* * ** * * * *
29420062 TAAGTCAACCCACGAAACGAGCATACGGGTGCTCAGCCGGTCGGAGAGGGAGAATGCGTAAGTCG
66 TAAGCCAACCCACGAAACGAACATACGGGCACTCAACCGGTCGGAGAGGCAGAAAGCGCAAGTCG
*
29420127 AGAATCGACCCGGTCCTCCCTGCGTGCTGTCGATCCTGTTGCTGGTCCTGCTGCCACAACCCTAG
131 AGAATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTGCTGGTCCTGCTGCCACAACCCTAG
29420192 G
196 G
* *
29420193 TCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGATTAGACAT-GGAATGAACTTCGTATGC
1 TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGATTAGAC-TGGGAATGAACTCCGTATGC
* ** *
29420257 CTAAGCCAACCCATGAAACGAATGTGCGGGCACTCAACCGGTCGGAGAGGCAGAAAGCGCAAGTC
65 CTAAGCCAACCCACGAAACGAACATACGGGCACTCAACCGGTCGGAGAGGCAGAAAGCGCAAGTC
* * *
29420322 GAGGATCGACCCGGTCCCCCCTGTGTGTTGTCGATCCTGTTGC
130 GAGAATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTGC
29420365 CTCAACCCTC
Statistics
Matches: 151, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
196 150 0.99
197 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (196 bp):
TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCCACGAAACGAACATACGGGCACTCAACCGGTCGGAGAGGCAGAAAGCGCAAGTCG
AGAATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTGCTGGTCCTGCTGCCACAACCCTAG
G
Found at i:29420592 original size:158 final size:157
Alignment explanation
Indices: 29420231--29420721 Score: 386
Period size: 158 Copynumber: 3.1 Consensus size: 157
29420221 CTCCGTATGA
* ** *
29420231 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAATGTGCGGGCACTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACC
* * ** * * *
29420296 GGTCGGAGAGGCAGAAAGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGTGTGTTGTCGATCCTG
66 GATCGGAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCAATCCCCCCTGCGTGCTGTCGATCCCG
* * * *
29420361 TTGCCTCAACCCTCAGTCTGGTCTGATC
131 -TGCCACAACCCTCAGTCCGATCTGAGC
* * * ** ** * **
29420389 TTAGA-TTGGGAATGAAGTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGTTGAGT
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAAC
* * * *
29420453 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAATCCCCTTCTGCGTGCTGTCGATCC
65 CGATCGGAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCAATCCCC-CCTGCGTGCTGTCGAT-C
*
29420518 CCG-GCCACAACCCT-AGGTCCGAT-TGGGGC
128 CCGTGCCACAACCCTCA-GTCCGATCT-GAGC
* * * * * *
29420547 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCAGTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACC
* * * * * * ** *
29420612 GA-CCGATGAGACAGAATGCGCAAGCTGGGGATCTACCCGGT-CCCCCTGCGTGCTGCCGATCCT
66 GATCGGA-GAGGCAGAAAGCGCAAGCCGAGGATCGACCCAATCCCCCCTGCGTGCTGTCGATCC-
* * ** *
29420675 AC-TGTCACAACCCTCGGTCCGATCCAATC
129 -CGTGCCACAACCCTCAGTCCGATCTGAGC
29420704 TTAGAC-TGGGAATGAACT
1 TTAGACAT-GGAATGAACT
29420722 TCATATGCTT
Statistics
Matches: 260, Mismatches: 60, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
155 2 0.01
156 15 0.06
157 44 0.17
158 182 0.70
159 14 0.05
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACC
GATCGGAGAGGCAGAAAGCGCAAGCCGAGGATCGACCCAATCCCCCCTGCGTGCTGTCGATCCCG
TGCCACAACCCTCAGTCCGATCTGAGC
Found at i:29420754 original size:26 final size:26
Alignment explanation
Indices: 29420703--29420755 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29420693 CCGATCCAAT
*
29420703 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29420729 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
29420755 C
1 C
29420756 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29421435 original size:26 final size:26
Alignment explanation
Indices: 29421397--29421449 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29421387 GGCTCAAACT
29421397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29421423 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29421449 C
1 C
29421450 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29421943 original size:270 final size:270
Alignment explanation
Indices: 29421445--29421963 Score: 677
Period size: 270 Copynumber: 1.9 Consensus size: 270
29421435 ATGAACTCCG
*
29421445 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCTC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCTC
** * * * *
29421510 AAGCCGGGCATCGAATTGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCCACAACCCTCGGTCTG
66 AAGCCGGGCATCGAACCGATCCCCCTCTGCGTGCTACCGATCCCGCTACCACAACCCTCGGTCCG
** *
29421575 GTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACAGGCGTGCAAGT
131 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACAGGCGTGCAAGT
*
29421640 GCTCAGCCACCCGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCCGATCCCCCCCGCGTGCTGT
196 GCTCAGCCACCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCCGCGTGCTGT
29421705 CAAAACCCTA
261 CAAAACCCTA
* * * * *
29421715 TATGCTTAAGTCAACCCACGAAAC-ATGCGTGCGGGCGCTGAACCGACCGGAGAGGCATAATGCG
1 TATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGC-
** * *
29421779 T-AAGCCGGGCATCGGCCCGATCCCCCTCTGCGTGCTATC-ATTCCCGGTACCACAACCCTCGGT
64 TCAAGCCGGGCATCGAACCGATCCCCCTCTGCGTGCTACCGA-TCCCGCTACCACAACCCTCGGT
* * * * *
29421842 CCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCGCAAAACATGCGTGCG
128 CCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACAGGCGTGCA
* * ** * * * *
29421907 GGTGCTCAGTCGA-TTGGGGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
193 AGTGCTCAG-CCACCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCC
29421964 TACGTGCTGT
Statistics
Matches: 212, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
269 2 0.01
270 207 0.98
271 3 0.01
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.17
Consensus pattern (270 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCTC
AAGCCGGGCATCGAACCGATCCCCCTCTGCGTGCTACCGATCCCGCTACCACAACCCTCGGTCCG
ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAACAGGCGTGCAAGT
GCTCAGCCACCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCCGCGTGCTGT
CAAAACCCTA
Found at i:29422064 original size:26 final size:26
Alignment explanation
Indices: 29422009--29422065 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
29421999 TCGATCCGAT
*
29422009 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTCTATG
*
29422035 CTTAGACTGGGGATGAACTC-CTATG
1 CTTAGACTGGGAATGAACTCTCTATG
29422060 CCTTAG
1 -CTTAG
29422066 TCAATCCACG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 4 0.14
26 24 0.86
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTCTATG
Found at i:29423056 original size:158 final size:158
Alignment explanation
Indices: 29422754--29423155 Score: 375
Period size: 158 Copynumber: 2.5 Consensus size: 158
29422744 ACTCCGTATG
* * *
29422754 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAGC
* * * * *
29422819 CAGTCGGAGAGGTAGAATGCGTAAACCGAGGATCAGCCTGGTCCCGCCTGCATGCTGTCGACCCT
66 CAGTCGAAGAGGCAGAATGCGTAAACCGAGGATCAGACTGATCCCCCCTGCATGCTGTCGACCCT
* **
29422884 ACTGCTGCAACCCTCAGTCTGATCTGAT
131 ACTACCACAACCCTCAGTCTGATCTGAT
* * * * *
29422912 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCGA-CCAAGAAACGAGTGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAG
* * * ** *
29422975 CCGGTCGAAGAGGCATAATGCGTAAGCCGAGGATC-GACTCGATCCCCCTCTGTGTGCTGTCGGT
65 CCAGTCGAAGAGGCAGAATGCGTAAACCGAGGATCAGACT-GATCCCCC-CTGCATGCTGTC-GA
* * * * *
29423039 CCC-GCTACCACAACCCTCGGTCCG-GCTGGGGT
127 CCCTACTACCACAACCCTCAGTCTGATCT--GAT
* * * * * * *
29423071 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAGC
** *
29423135 CACCCGAAGAGGCAAAATGCG
66 CAGTCGAAGAGGCAGAATGCG
29423156 CAAGCTGGGG
Statistics
Matches: 194, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.02
157 62 0.32
158 83 0.43
159 46 0.24
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAGC
CAGTCGAAGAGGCAGAATGCGTAAACCGAGGATCAGACTGATCCCCCCTGCATGCTGTCGACCCT
ACTACCACAACCCTCAGTCTGATCTGAT
Found at i:29423705 original size:158 final size:157
Alignment explanation
Indices: 29423405--29423937 Score: 468
Period size: 158 Copynumber: 3.4 Consensus size: 157
29423395 CCGCTATCAG
** * * **
29423405 TCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCCGCAACCCTCGGTCGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * ** * * * * * * *
29423470 CAACCCACGAAACGAACGTGCGGGTGCTCAGTCAACCGGAGCGACAGAATGGGCATGTCAGGGA-
65 CAACCCATGAAACGAGCGTGCGGGCACTCAGTCAGCCGGAGAGGCAGAATGTGCAAGCCGGGGAT
** *
29423534 CTGACC-CGATCCCCCCTATGTACTGTCGA
130 C-GACCTCG-TCCCCCCTGCGTGCTGTCGA
* * *
29423563 TCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTTAGAC-TGGAAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCGCAACCCTCGGTC-GGTCTGATCTTAGACATGG-AATGAACTCCGTATGCCTAAG
* * * * *
29423627 TCAACCTATGAAACGAGCGTTCGGGCACTGAGTCAGCCGGAGAGGCAAAATGTGCAAGCCGGGGA
64 CCAACCCATGAAACGAGCGTGCGGGCACTCAGTCAGCCGGAGAGGCAGAATGTGCAAGCCGGGGA
* * *
29423692 TCGGCCTTGTCCCCCTCTGCGTGCTGTCGG
129 TCGACCTCGTCCCCC-CTGCGTGCTGTCGA
* * * * ** * *
29423722 T-CTCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAG
1 TCCT-GCTGCCGCAACCCTCGGTCGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * *
29423786 CCAACCCATGAAAC-AGGCGTGCGGGCACTCTGCCAGTCAGAGAGGCAGAATGTGCAAGCCGGGG
64 CCAACCCATGAAACGA-GCGTGCGGGCACTCAGTCAGCCGGAGAGGCAGAATGTGCAAGCCGGGG
* * * *
29423850 ATCAACCTGGT-CCCCCTGCGTGCTGCCAA
128 ATCGACCTCGTCCCCCCTGCGTGCTGTCGA
* * *
29423879 TCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGAC-TGGGAACGAACTCCATATGC
1 TCCTGCTGCCGCAACCCTCGGT-CGGTCTGATCTTAGACAT-GGAATGAACTCCGTATGC
29423938 TTAGACTGGG
Statistics
Matches: 298, Mismatches: 65, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
157 54 0.18
158 123 0.41
159 119 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
TCCTGCTGCCGCAACCCTCGGTCGGTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAACGAGCGTGCGGGCACTCAGTCAGCCGGAGAGGCAGAATGTGCAAGCCGGGGATC
GACCTCGTCCCCCCTGCGTGCTGTCGA
Found at i:29425508 original size:26 final size:26
Alignment explanation
Indices: 29425467--29425519 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29425457 CTGGTCTGAT
29425467 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
29425493 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29425519 C
1 C
29425520 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29426358 original size:26 final size:26
Alignment explanation
Indices: 29426317--29426447 Score: 235
Period size: 26 Copynumber: 5.0 Consensus size: 26
29426307 CTGGTCTGAT
**
29426317 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
29426343 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29426369 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29426395 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29426421 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29426447 C
1 C
29426448 CTAAGTCAAC
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29427173 original size:159 final size:158
Alignment explanation
Indices: 29426789--29427290 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 158
29426779 AACTCCGTAT
* * * * * *
29426789 GCTTAAACATGGAATGAACTCTGTCTGCCTAAGCCAGCCCACGAAACGAACGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
* * *
29426854 TC-AGCTGGAGAGGCAGAATGTACAAGCCGGGGATCAGCCCGGTCACCC-CTGCGTGCTGTCGAT
66 TCGA-CTGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTC-CCCTCTGCGTGCTGCCGAT
* * ** *
29426917 CCTGCTACCGCAACCCTCGGTCTGGTCCGA
129 CCTACTACCACAACCCTCAATCTGGTCAGA
* * * * ** * *
29426947 TCTTAGAC-TGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACT-TGCGCACGGGAGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGAGCTC
* * *
29427010 AGTCGATTGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCTCCTCTGCGTGCTGCCGG
64 AGTCGACTGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCC-CCTCTGCGTGCTGCCGA
* * * * *
29427075 T-CTCACTACCATAGCCCTTAATCTGGTTAGG
128 TCCT-ACTACCACAACCCTCAATCTGGTCAGA
* * *
29427106 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
** * * * * * * *
29427171 TCGACCAGAGTGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCTCTGCGTGCTGCCGATAC
66 TCGACTGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCC
* * ** *** *
29427236 TGCGACCGTAACCCTTGGTCTGGTCCGA
131 TACTACCACAACCCTCAATCTGGTCAGA
* *
29427264 TCTTAGAC-TGGAATGAACTCCTTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
29427291 TTAGACTGAG
Statistics
Matches: 273, Mismatches: 62, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 20 0.07
158 133 0.49
159 119 0.44
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
TCGACTGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCC
TACTACCACAACCCTCAATCTGGTCAGA
Found at i:29427310 original size:26 final size:25
Alignment explanation
Indices: 29427265--29427316 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
29427255 CTGGTCCGAT
*
29427265 CTTAGACTGGAATGAACTCCTTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
29427290 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
29427316 C
1 C
29427317 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:29428036 original size:26 final size:26
Alignment explanation
Indices: 29427985--29428037 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29427975 GGCTCAAAAT
* * *
29427985 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29428011 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29428037 C
1 C
29428038 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29428365 original size:159 final size:157
Alignment explanation
Indices: 29428010--29428670 Score: 596
Period size: 159 Copynumber: 4.2 Consensus size: 157
29428000 AATTTCGTAT
*
29428010 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCGCGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * * *
29428075 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATAT
66 CCGGCCGAAAAGGCATAATGCGCAAGCCGGGGAACGGCCTGGTCCCCTCTACGTGCTGTCGATCT
* * *
29428140 TGCTACCACAATCCTCAGTCCGGTCTGA
131 TGCTGCCACAACCCTCAGTCCGG-CTGG
* * * * * * * * *
29428168 TCTTAGAC-TGTGTATGAACTCGATATGCATAAGTCAACCCACGAAACGAACGTGCGGGTGCTTA
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* *
29428232 GCCGACCGAAAAGGCATAATGCGCAAGCCGGGGAACGGCCTGGTCCCACTCTACGTTCTGTCGAT
65 GCCGGCCGAAAAGGCATAATGCGCAAGCCGGGGAACGGCCTGGTCCC-CTCTACGTGCTGTCGAT
* * *
29428297 CTTGCTGGCACAACCCTCGGTTCGGCTGGG
129 CTTGCTGCCACAACCCTCAGTCCGGCT-GG
* * * * *
29428327 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACAAAACGGGCGTACGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
29428392 CTGGCC-AAAGAGGCATAATGTGCAAGCCGGGGACCGGCCTGGTCCCCCTCTACGTGCTATC-AG
66 CCGGCCGAAA-AGGCATAATGCGCAAGCCGGGGAACGGCCTGGT-CCCCTCTACGTGCTGTCGA-
*** * * *
29428455 TCCCACTGCCACAACCTTCTGTCCGACTAGG
128 TCTTGCTGCCACAACCCTCAGTCCGGCT-GG
* * * *
29428486 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * ** ** *
29428551 TTGGCCGAAAAAGCAAAATGCGCAAGCTAGGGATTGG-CTCGGTCCCC-CATGCGTGCTGTCGAT
66 CCGGCCGAAAAGGCATAATGCGCAAGCCGGGGAACGGCCT-GGTCCCCTC-TACGTGCTGTCGAT
* ** ** * *
29428614 CCTGCTGCCGTAACCCTTGGTTCGGTCTGA
129 CTTGCTGCCACAACCCTCAGTCCGG-CTGG
*
29428644 TCTTAGAC-TGAGAATGAACTCCATATG
1 GCTTAGACATG-GAATGAACTCCATATG
29428671 GTTAGATTCT
Statistics
Matches: 403, Mismatches: 87, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.01
158 150 0.37
159 240 0.60
160 8 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGAAAAGGCATAATGCGCAAGCCGGGGAACGGCCTGGTCCCCTCTACGTGCTGTCGATCT
TGCTGCCACAACCCTCAGTCCGGCTGG
Found at i:29428612 original size:317 final size:317
Alignment explanation
Indices: 29428010--29428670 Score: 685
Period size: 317 Copynumber: 2.1 Consensus size: 317
29428000 AATTTCGTAT
* *
29428010 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCGCGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* ** * * * *
29428075 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATAT
66 CCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTACGTGCTATCGATAC
** * * * *
29428140 TGCTACCACAATCCTCAGTCCGGTCTGATCTTAGACTGTGTATGAACTCGATATGCATAAGTCAA
131 CACTACCACAATCCTCAGTCCGGACTGAGCTTAGACTGTGAATGAACTCGATATGCATAAGCCAA
* * * * * *
29428205 CCCACGAAACGAACGTGCGGGTGCTTAGCCGACCGAAAAGGCATAATGCGCAAGCCGGGGAACGG
196 CCCACGAAACGAACGTACGGGCGCTCAGCCGACCGAAAAAGCAAAATGCGCAAGCCAGGGAACGG
* * * *
29428270 CCTGGTCCCACTCTACGTTCTGTCGATCTTGCTGGCACAACCCTCGGTTCGG-CTGGG
261 CCTGGTCCCACTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCT-GA
* * * *
29428327 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACAAAACGGGCGTACGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * *
29428392 CTGGCCAAAGAGGCATAATGTGCAAGCCGGGGACCGGCCTGGTCCCCCTCTACGTGCTATC-AGT
66 CCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCC-CTACGTGCTATCGA-T
* * * * *
29428456 CCCACTGCCACAA-CCTTCTGTCC-GACTAGGGCTTAGACATG-GAATGAACTTCG-TATGCCTA
129 ACCACTACCACAATCC-TCAGTCCGGACT-GAGCTTAGAC-TGTGAATGAAC-TCGATATGCATA
* * * ** * *
29428517 AGCCAACCCATGAAACGAGCGTATGGGCGCTCAGTTGGCCGAAAAAGCAAAATGCGCAAGCTAGG
190 AGCCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCGAAAAAGCAAAATGCGCAAGCCAGG
** * ** *
29428582 GATTGG-CTCGGTCCC-C-CATGCGTGCTGTCGATCCTGCTGCCGTAACCCTTGGTTCGGTCTGA
255 GAACGGCCT-GGTCCCACTC-TACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCTGA
*
29428644 TCTTAGAC-TGAGAATGAACTCCATATG
1 GCTTAGACATG-GAATGAACTCCATATG
29428671 GTTAGATTCT
Statistics
Matches: 280, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
316 3 0.01
317 162 0.58
318 110 0.39
319 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
CCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTACGTGCTATCGATAC
CACTACCACAATCCTCAGTCCGGACTGAGCTTAGACTGTGAATGAACTCGATATGCATAAGCCAA
CCCACGAAACGAACGTACGGGCGCTCAGCCGACCGAAAAAGCAAAATGCGCAAGCCAGGGAACGG
CCTGGTCCCACTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCTGA
Found at i:29429112 original size:158 final size:159
Alignment explanation
Indices: 29428854--29429146 Score: 378
Period size: 158 Copynumber: 1.8 Consensus size: 159
29428844 TTAGAAATGG
* **
29428854 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCATTCGGCCGGGAGG
1 AATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAACGTGCGGGTGCTCAGCCGGCCGGGAGG
* *
29428919 CAGAATGCACATACCGAGGACCGACCCGATCCCCTC-CTACGTGCTGTCGATC-CTGCTGCCACA
66 CAGAATGCACATACCCAGGACCGACCCGATCCCCTCTCTACGTGCTGTCGATCTC-GCTACCACA
29428982 ACCCTCAGTTCAATCAGAACTTAGACTGGA
130 ACCCTCAGTTCAATCAGAACTTAGACTGGA
* * * * *
29429012 AATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTTCGGGTGCTGAGCCGGCCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAACGTGCGGGTGCTCAGCCGGCCGG-GAG
* ** * * * *
29429077 GCATAATGTGCA-ACCCAGGGATCGGCCCGGT-CCCTCTCTGCGTGCTGTCGATCTCGCTACCAC
65 GCAGAATGCACATACCCA-GGACCGACCCGATCCCCTCTCTACGTGCTGTCGATCTCGCTACCAC
29429140 AACCCTC
129 AACCCTC
29429147 GGTCCGGCTG
Statistics
Matches: 114, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
158 62 0.54
159 51 0.45
160 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.18
Consensus pattern (159 bp):
AATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAACGTGCGGGTGCTCAGCCGGCCGGGAGG
CAGAATGCACATACCCAGGACCGACCCGATCCCCTCTCTACGTGCTGTCGATCTCGCTACCACAA
CCCTCAGTTCAATCAGAACTTAGACTGGA
Found at i:29429186 original size:159 final size:157
Alignment explanation
Indices: 29428819--29429199 Score: 419
Period size: 159 Copynumber: 2.4 Consensus size: 157
29428809 GGTCCAACTG
* *
29428819 CCACAACCCTCGGTCCAACTGGGGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCC-ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAA
** *
29428884 GAAACGAACGTGCGGGTGCTCATTCGGCCGGGAGGCAGAATGCACATACCGAGGACCGACCCGAT
65 GAAACGAACGTGCGGGTGCTCAGCCGGCCGGGAGGCAGAATGCACATACCCAGGACCGACCCGAT
*
29428949 CCCCTCCTACGTGCTGTCGATCCTGCTG
130 CCCCTCCTACGTGCTGTCGATCCTGCTA
* * * * ** * *
29428977 CCACAACCCTCAGTTCAATCAGAACTTAGAC-TGGAAATGAACTCTGTATGCCTAAGTCAACCCA
1 CCACAACCCTCGGTCCACT-GGGGCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCA
* * * * ** * *
29429041 AGAAACGAGCGTTCGGGTGCTGAGCCGGCCGGAGAGGCATAATGTGCA-ACCCAGGGATCGGCCC
64 AGAAACGAACGTGCGGGTGCTCAGCCGGCCGG-GAGGCAGAATGCACATACCCA-GGACCGACCC
* *
29429105 GGT-CCCTCTCTGCGTGCTGTCGAT-CTCGCTA
127 GATCCCCTC-CTACGTGCTGTCGATCCT-GCTA
* * *
29429136 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCC-ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
29429200 CAAAATGGGT
Statistics
Matches: 180, Mismatches: 35, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.03
158 85 0.47
159 86 0.48
160 4 0.02
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (157 bp):
CCACAACCCTCGGTCCACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAG
AAACGAACGTGCGGGTGCTCAGCCGGCCGGGAGGCAGAATGCACATACCCAGGACCGACCCGATC
CCCTCCTACGTGCTGTCGATCCTGCTA
Found at i:29429354 original size:26 final size:26
Alignment explanation
Indices: 29429318--29429370 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29429308 TCAGTTTGAT
29429318 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29429344 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29429370 C
1 C
29429371 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29429884 original size:26 final size:26
Alignment explanation
Indices: 29429843--29429895 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29429833 CTGGTCTGAT
29429843 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
29429869 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29429895 C
1 C
29429896 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29430375 original size:527 final size:522
Alignment explanation
Indices: 29429001--29430452 Score: 1423
Period size: 525 Copynumber: 2.8 Consensus size: 522
29428991 TCAATCAGAA
* * * * *
29429001 CTTAGAC-TGGAAATGAAC-TCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTTCGGGTGCTGA
1 CTTAGACATGG-AATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * ** * ** * * **
29429064 GCCGGCCGGAGAGGCATAATGTGCAACCCAGGGATCGGCC-CGGTCCCTCTCTGCGTGCTGTCGA
64 ACCGACCAGAAAGGCAGAATGCGCAAGTCAGGGA-CAGCCTCAATCCCCCT-TACGTGCTACCGA
* * * * *
29429128 TCTCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGC
127 TCCCACTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
** * * ** * *
29429193 CAACCCACAAAATGGGTGTGCGGGCACTCTACCGGTC-GGAGAGGCAGAATGTGCCAGCCGGGGA
192 CAACCCATGAAATGGGCGTGCGGGC-CTCAACCGG-CAGGAGAGG-AGAATGCACAAGTCGGGGA
* * * * * * *
29429257 TCGGCCCGATCCTCCTTGCGAGCTGCTGATCCTGCTACCGCAACCCTCAGTTCAGTTTGATCTTA
254 TCGGCCCGATCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTC-GATCAGTCTGATCTTA
* *
29429322 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGA
318 GACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGA
* * * * *
29429387 AACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCTGGCCGGAGAGGTAGAATGCATAAAACGGG
383 AACGAGCGTGCGGGCGCTCAGTCGATCGAAGAAGCAGGCCGGAGAGGCAGAATGCATAAAACAGG
* * * * * **
29429452 GATCGACCTGATCCCCTCTACGTGGTCCCAATCTTGCTGCTAGTCCTGCTACCGTAACCCTCGGT
448 GATCGACCTGATCCCCTCTACATGCTACCAATCTCGCTGCCAGTCCTGCTACCACAACCCTCGGT
** *
29429517 CCTGTCCGAT
513 CCTGAACGAG
* * *
29429527 CTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCGCTCAAC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * * ** * ** ** **
29429592 CGACCGGAAAGGCAGAATGTGTAAGTTGGGGACCGGTTCAATCCCCCTTACGTGCTGTCGATCTT
66 CGACCAGAAAGGCAGAATGCGCAAGTCAGGGACAGCCTCAATCCCCCTTACGTGCTACCGATCCC
* * * * ** * * *
29429657 GCTGCCACAACCATTGGTCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTACGTCA
131 ACTACCACAACCCTTGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * * * *
29429720 ACCCATGAAACGAGCGTTCGGGCATTGAGCTGACTA-GAGAGGCGTAATGCACAAGTCAGGGATC
194 ACCCATGAAATGGGCGTGCGGGC-CTCAACCGGC-AGGAGAGGAG-AATGCACAAGTCGGGGATC
* ** * * * *
29429784 GGCCCGATCTCCCCTGCGTGCTGTCAATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGA
256 GGCCCGATCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCGATC-AGTCTGATCTTAGA
29429849 CTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAA
320 CTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAA
* * * ** **
29429914 CAAGCGTGCGGGCGCTCAGTCGATCGAATAAGCAGGCCGGAGAGGCATAATGTGTAAGCCAGGGA
385 CGAGCGTGCGGGCGCTCAGTCGATCGAAGAAGCAGGCCGGAGAGGCAGAATGCATAAAACAGGGA
* ** * * *
29429979 TC-AGCCTGGTCCCCCTCTGTATGCTATCGATCTCGCTGCCAGTCCTGCTGCCACAACCCTCGGT
450 TCGA-CCTGAT-CCCCTCTACATGCTACCAATCTCGCTGCCAGTCCTGCTACCACAACCCTCGGT
* *
29430043 CC-GAAAGGGG
513 CCTG-AACGAG
* *
29430053 CTTAGACATGGAATGACCTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * * * * *
29430118 C-AGCCAGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCT-GATCCCCTTTTATGTGCTACCGGT
66 CGA-CCAGAAAGGCAGAATGCGCAAGTCAGGGA-CAGCCTCAATCCCC-CTTACGTGCTACCGAT
* *
29430181 CCCATTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCC
128 CCCACTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
*
29430246 AACCCATGAAATGGGCGTGCGGGCGCTCAATCGGCAGGAGAGGTAGAATGCACAAGTCGGGGATC
193 AACCCATGAAATGGGCGTGCGGGC-CTCAACCGGCAGGAGAGG-AGAATGCACAAGTCGGGGATC
* * * * *
29430311 GACCCGGTCCCCCCTACGTGCTGTTGATCCTGCTGCCGTAACCCTCGATCCGATCTGATCTTAGA
256 GGCCCGATCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCGATCAG-TCTGATCTTAGA
* * *
29430376 CTAGGAATGAACTCTGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAA
320 CTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAA
*
29430441 CGAGTGTGCGGG
385 CGAGCGTGCGGG
29430453 TGCTTAGCCG
Statistics
Matches: 745, Mismatches: 161, Indels: 39
0.79 0.17 0.04
Matches are distributed among these distances:
524 8 0.01
525 279 0.37
526 216 0.29
527 239 0.32
528 3 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (522 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
CGACCAGAAAGGCAGAATGCGCAAGTCAGGGACAGCCTCAATCCCCCTTACGTGCTACCGATCCC
ACTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAATGGGCGTGCGGGCCTCAACCGGCAGGAGAGGAGAATGCACAAGTCGGGGATCGGCCC
GATCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCGATCAGTCTGATCTTAGACTAGGA
ATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGTCGATCGAAGAAGCAGGCCGGAGAGGCAGAATGCATAAAACAGGGATCGACC
TGATCCCCTCTACATGCTACCAATCTCGCTGCCAGTCCTGCTACCACAACCCTCGGTCCTGAACG
AG
Found at i:29430399 original size:26 final size:26
Alignment explanation
Indices: 29430370--29430422 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29430360 CCGATCTGAT
* *
29430370 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
29430396 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
29430422 C
1 C
29430423 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:29430749 original size:26 final size:26
Alignment explanation
Indices: 29430720--29430771 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29430710 CCGATTCGAT
** *
29430720 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
29430746 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
29430772 GCTAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:29431042 original size:159 final size:157
Alignment explanation
Indices: 29430746--29431564 Score: 674
Period size: 159 Copynumber: 5.2 Consensus size: 157
29430736 ACTTCGTATG
* * * * ** *
29430746 CTTAGACAAGGAATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
** * * ** * * *
29430811 CAATCGTAGAGGTAGAATGCGCAAGCCAGGGA-CTGGCCCGGTCCCCC-CTTGCATGTTGTCGAT
65 CAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCC-GTCCCCCTC-TGCGTGCTGTCGAT
*
29430874 CCTGCTGCCACAACCTTCAGTCTGATCCGAT
127 CCTGCTGCCACAACCCTCAGTCTGATCCGAT
* * *
29430905 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGCAGGCGTTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
* * * *
29430970 CAGCCAGAGAGGCATAATGCGCAAGCTGGTGATCGACCCAGTCCCCCTCTACGTGCTGTCGATCC
65 CAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCC-GTCCCCCTCTGCGTGCTGTCGATCC
* * * * * **
29431035 CGTTGCCACAACCCTCTGTCCGA-CTGGGG
129 TGCTGCCACAACCCTCAGTCTGATC-CGAT
* * * *
29431064 CTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTAC-TT-A
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG--CGTTGA
** * * * *
29431127 GCTGGTCGGAGAGGCAGAATGAGCAAGCCGAGGATC-AGCCCGGT-CCCCTCTGCGTGCTGTCGA
63 GCCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCC-GTCCCCCTCTGCGTGCTGTCGA
* * *
29431190 TCCTACTGCCGCAACCCTC-GATCCGATCCGAT
126 TCCTGCTGCCACAACCCTCAG-TCTGATCCGAT
* * * **
29431222 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGTGGGCACTGA-C
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
* * * * * * * *
29431286 TCAACCGGAGAGGCATAATGCGCAAG-TCGGGGTTTGGCCCGATCCCCTTCTGTGTGCTGTCGGT
65 -CAGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCG-TCCCCCTCTGCGTGCTGTCGAT
* * * * **
29431350 CCCGCTGCCACAACCCTCGGTTTGA-CTAGGG
127 CCTGCTGCCACAACCCTCAGTCTGATC-CGAT
* * * * *
29431381 CTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCGTTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
* * * * *
29431446 CGGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGATCCTGTCCCCC-CTGCGTGCTGTCGATCC
65 CAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGTCCCCCTCTGCGTGCTGTCGATCC
* *
29431510 TGCTGTCGCAACCCTCAGT-TGATCCGAT
129 TGCTGCCACAACCCTCAGTCTGATCCGAT
*
29431538 CTTAGACTAGGAATGAACTTCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
29431565 TTAGACTGGG
Statistics
Matches: 515, Mismatches: 119, Indels: 54
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.00
157 32 0.06
158 149 0.29
159 319 0.62
160 12 0.02
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTGAGCC
AGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGTCCCCCTCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCAGTCTGATCCGAT
Found at i:29431345 original size:317 final size:315
Alignment explanation
Indices: 29430745--29431564 Score: 1015
Period size: 317 Copynumber: 2.6 Consensus size: 315
29430735 AACTTCGTAT
* * * ** * * *
29430745 GCTTAGACAAGGAATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG-ACTTAG
** * * * *
29430810 CCAATCGTAGAGGTAGAATGCGCAAGCC-AGGGACTGGCCCGGTCCCCCCTTGCATGTTGTCGAT
65 CCGGTCGGAGAGGTAGAATGCGCAAGCCGA-GGA-TCGCCCGGTCCCCCC-TGCGTGCTGTCGAT
* *
29430874 CCTGCTGCCACAACCTTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
127 CCTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * *
29430939 ATCCCACGAAACGAGCGTGCAGGCGTTGAGCCAGCCAGAGAGGCATAATGCGCAAGCTGGTGATC
192 ATCCCACGAAACGAGCGTGCAGGCACTGAGCCAACCAGAGAGGCATAATGCGCAAGCTGGGGATC
* * *
29431004 GACCCAGTCCCCCTCTACGTGCTGTCGATCCCGTTGCCACAACCCTCTGTCCGACTGGG
257 GACCCAGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTAGG
*
29431063 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTACTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG-ACTTAG
* * * *
29431128 CTGGTCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCGGTCCCCTCTGCGTGCTGTCGATCC
65 CCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATC-GCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
29431193 TACTGCCGCAACCCTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
129 TGCTGCCGCAACCCTCAG-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * *
29431257 TCCCACGAAACGAGCGTGTGGGCACTGA-CTCAACCGGAGAGGCATAATGCGCAAG-TCGGGGTT
193 TCCCACGAAACGAGCGTGCAGGCACTGAGC-CAACCAGAGAGGCATAATGCGCAAGCT-GGGGAT
* * * ** * **
29431320 TGGCCC-GATCCCCTTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTTGACTAGG
256 CGACCCAG-TCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTAGG
*
29431380 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGG-CGTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAC-TT-A
* * * * *
29431444 GCCGGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGATCCTGTCCCCCCTGCGTGCTGTCGATC
64 GCCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCG-CCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
29431509 CTGCTGTCGCAACCCTCAGT-TGATCCGATCTTAGACTAGGAATGAACTTCGTATGC
128 CTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
29431565 TTAGACTGGG
Statistics
Matches: 433, Mismatches: 59, Indels: 22
0.84 0.11 0.04
Matches are distributed among these distances:
315 1 0.00
316 40 0.09
317 298 0.69
318 93 0.21
319 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGACTTAGC
CGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCC
CACGAAACGAGCGTGCAGGCACTGAGCCAACCAGAGAGGCATAATGCGCAAGCTGGGGATCGACC
CAGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTAGG
Found at i:29432296 original size:26 final size:26
Alignment explanation
Indices: 29432258--29432310 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29432248 TGCTCAAACT
29432258 CTTAGACTAGGAATGAACTTCC-TATG
1 CTTAGACTAGGAATGAAC-TCCGTATG
29432284 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
29432310 C
1 C
29432311 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29433374 original size:26 final size:26
Alignment explanation
Indices: 29433323--29433375 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29433313 CTGGTCCAAT
**
29433323 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29433349 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29433375 C
1 C
29433376 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29434265 original size:26 final size:26
Alignment explanation
Indices: 29434229--29434281 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29434219 CTGGTTAGAT
* *
29434229 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
29434255 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
29434281 C
1 C
29434282 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:29434769 original size:26 final size:26
Alignment explanation
Indices: 29434740--29434789 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
29434730 CCTATCCGAT
*
29434740 CTTAGACTAAGAATGAACTCCGTAAG
1 CTTAGACTAAGAATAAACTCCGTAAG
**
29434766 CTTAGACTGGGAATAAACTCCGTA
1 CTTAGACTAAGAATAAACTCCGTA
29434790 CGCCTAGGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTAGACTAAGAATAAACTCCGTAAG
Found at i:29434915 original size:12 final size:12
Alignment explanation
Indices: 29434898--29434925 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
29434888 CCCCTCTACG
29434898 TGCTGTCGATCC
1 TGCTGTCGATCC
29434910 TGCTGTCGATCC
1 TGCTGTCGATCC
29434922 TGCT
1 TGCT
29434926 AGCACAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.32, G:0.25, T:0.36
Consensus pattern (12 bp):
TGCTGTCGATCC
Found at i:29435298 original size:159 final size:156
Alignment explanation
Indices: 29434923--29435312 Score: 403
Period size: 158 Copynumber: 2.5 Consensus size: 156
29434913 TGTCGATCCT
*
29434923 GCTAGCACAACCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTACCACAACCCTC-GTCC-GATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
29434988 CCACGAAACGAGTGTAGGGGCGCTTACTCGATCGGAGAGGCAGAATGCACAAGACGAGGACTAGC
64 CCACGAAACGAGCGTAGGAGCGCTTACTCGACCGGAGAGGCAAAATACACAAGACGAGGACTAGC
* ** *
29435053 TCGATCCCCCCTACGTGCTGTCGATCTT
129 CCGATCCCCCCTACGTGCTACCGATCTC
* * * ** * *
29435081 GCTATCGCAACCCTCGATCCGATTTGATCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GCTACCACAACCCTCG-TCCGA-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * *
29435145 CCCACGAAACGAGCGTTA-GAGCG-TTGAGC-C-AGCCGGAGAGGTAAAATACGCAAGCCGAGGA
63 CCCACGAAACGAGCG-TAGGAGCGCTT-A-CTCGA-CCGGAGAGGCAAAATACACAAGACGAGGA
* * *
29435206 TTAGCCCGGTCCCCCTCTGCGTGCTACCGATCTC
124 CTAGCCCGATCCCCC-CTACGTGCTACCGATCTC
* *
29435240 GCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTC-GTCCGA-TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
*
29435305 CCATGAAA
64 CCACGAAA
29435313 TGGGCGTGCG
Statistics
Matches: 189, Mismatches: 33, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
157 7 0.04
158 105 0.56
159 75 0.40
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.19
Consensus pattern (156 bp):
GCTACCACAACCCTCGTCCGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTAGGAGCGCTTACTCGACCGGAGAGGCAAAATACACAAGACGAGGACTAGCCC
GATCCCCCCTACGTGCTACCGATCTC
Found at i:29435375 original size:159 final size:154
Alignment explanation
Indices: 29434923--29435388 Score: 425
Period size: 159 Copynumber: 2.9 Consensus size: 154
29434913 TGTCGATCCT
*
29434923 GCTAGCACAACCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTACCACAACCCTC-GTCC-GATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
29434988 CCACGAAACGAGTGTAGGGGCGCTTACTCGATCGGAGAGGCAGAATGCACAAGACGAGGA-CTAG
64 CCACGAAACGAGCGT-GGGGCGCTAAC-CGATCGGAGAGGCAGAATGCGCAAGACGAGGATC-AG
* * ** *
29435052 CTCGATCCCCCCTACGTGCTGTCGATCTT
126 CTCGGTCCCCCCTGCGTGCTACCGATCTC
* * * ** * *
29435081 GCTATCGCAACCCTCGATCCGATTTGATCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GCTACCACAACCCTCG-TCCGA-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * * *
29435145 CCCACGAAACGAGCGTTAGAGCGTTGAGCC-AGCCGGAGAGGTAAAATACGCAAGCCGAGGATTA
63 CCCACGAAACGAGCG-TGGGGCGCT-AACCGA-TCGGAGAGGCAGAATGCGCAAGACGAGGATCA
*
29435209 GCCCGGTCCCCCTCTGCGTGCTACCGATCTC
125 GCTCGGTCCCCC-CTGCGTGCTACCGATCTC
* *
29435240 GCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTC-GTCCGA-TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
29435305 CCATGAAATGGGCGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGC
64 CCACGAAACGAGCGTG-GGGCGCT-AACCGATCGGAGAGGCAGAATGCGCAAGACGAGGATCAGC
*
29435370 TCGGTCCCCCCTGTGTGCT
127 TCGGTCCCCCCTGCGTGCT
29435389 GCCAATCTTA
Statistics
Matches: 240, Mismatches: 56, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 113 0.47
159 119 0.50
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (154 bp):
GCTACCACAACCCTCGTCCGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGGGGCGCTAACCGATCGGAGAGGCAGAATGCGCAAGACGAGGATCAGCTCGG
TCCCCCCTGCGTGCTACCGATCTC
Found at i:29435467 original size:26 final size:26
Alignment explanation
Indices: 29435427--29435477 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29435417 TGGTTTGATC
29435427 TTAGACTGGGAATGAAGCTT-GTATGG
1 TTAGACTGGGAATGAA-CTTCGTATGG
*
29435453 TTAGACTGGGGATGAACTTCGTATG
1 TTAGACTGGGAATGAACTTCGTATG
29435478 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.25, C:0.10, G:0.33, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGG
Found at i:29435523 original size:685 final size:684
Alignment explanation
Indices: 29434419--29436464 Score: 2092
Period size: 685 Copynumber: 3.0 Consensus size: 684
29434409 CTCGGTCTGA
* * * *
29434419 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTTCGGGTG
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGCG
* * * * * * * *
29434484 CTGACCCA-CCGGAGAGGCATAATGCGCAAGCTGGGGA-TGGACCTGATCCCTCTCTACGTGTTG
66 CTGAACCAGCCGGAGAGGTAAAATACGCAAGC-AGGGATTGG-CCTGATCCCCCTCTGCGTGCTG
* * * *
29434547 TCGGTCCCGTTACCACAACCCTCGGTCCGGA-TGGGGCTTAGACATGGAATGAACTCCCTATGCC
129 TCGGTCTCGCTGCCACAACCCTCAGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCC
* * * *
29434611 TAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCATAATGCGCAATTAG
193 TAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCG
* * *
29434676 GGGATCGGCTCGGTCCCCCTGCGTGCTGCCGATCTTACTGTCGCAACCCTCGGTCCT-ATCCGAT
258 GGGATCGGCTCGGTCCCCCTGTGTGCTGCCGATCTTACTGTCGCAACCCTCGGT-CTGGTCTGAT
** * * * * * *
29434740 CTTAGACTAAGAATGAACTCCGTAAGCTTAGACTGGGAATAAACTCCGTACGCCTAGGTCAACCC
322 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * *
29434805 ATGAAACAAAGCATG-CGGGCGATCAGTCGACCGGAGAGGCCGGTCAGAGAGGCATAATGCGCAA
387 ACGAAAC-GAG--TGTCGGGCGCTCAGTCGACCGGAGAGGCCGATCAGAGAGGCATAATGCGCAA
*
29434869 GCTGCGAATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCTGCTGTCGATCCTGCTAG-CACAA
449 GCTGCGAATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCTGCTGTCGATCCTGCTAGCCACAA
*
29434933 CCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
514 CCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACG
** * * *
29434998 AGTGTAG-GGGCGCTTACTCGATCGGAGAGGCAGAATGCACAAGACGAGGA-CTAGCTCGATC-C
579 AGCAT-GCGGGCACTCACTCGATCGGAGAGGCAGAATGCACAAGACGAGGATC-AGCCCGATCAC
* *
29435060 CCCCTACGTGCTGTCGATCTTGCTATCGCAACCCTC-GATCC-G
642 CCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCAG-TCCAG
** * *
29435102 ATTTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGAGC
1 -TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGC
* * * * * * *
29435167 GTTGAGCCAGCCGGAGAGGTAAAATACGCAAGCCGAGGATTAGCCCGGTCCCCCTCTGCGTGCTA
65 GCTGAACCAGCCGGAGAGGTAAAATACGCAAGCAG-GGATTGGCCTGATCCCCCTCTGCGTGCTG
* *
29435232 CCGATCTCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
129 TCGGTCTCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * *
29435297 AAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGTAAGTCGG
194 AAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGG
* *
29435362 GGATCGGCTCGGTCCCCCCTGTGTGCTGCCAATCTTACTGTCGCAACCCTCGGTCTGGTTTGATC
259 GGATCGGCTCGGT-CCCCCTGTGTGCTGCCGATCTTACTGTCGCAACCCTCGGTCTGGTCTGATC
* *
29435427 TTAGACTGGGAATGAAGCT-TGTATGGTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCC
323 TTAGACTGGGAATGAA-CTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
29435491 ACAAAACGAGTGTACGGGCGCTCAGCCGACCGGAGAGGTCGATCGGAGAGGCAGAATGCGTAAGC
387 ACGAAACGAGTGT-CGGGCGCTCAGTCGACCGGAGAGGCCGATCAGAGAGGCATAATGCGCAAG-
* * * * * * * * *
29435556 CAG-GGATCAACCCGATCCCTCTCTGCGTACTGCCAATCCTGCTGTCGCAACCCTCAGTCCAGTC
450 CTGCGAATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCTGCTGTCG--ATCCT--G-CTAG-C
* ** * *
29435620 CGATCTTAGACTGGGAATAAACTCTGTAT---GCTTAGACATGGAATGAACTCCGTATGCCTAAG
509 C-A-C-AACCCTCGG--T---C-C-GGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * ** *
29435682 CCAACCCACCAAAATGAGCATGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCGTAAGTCGAGG
564 CCAACCCA-CAAAACGAGCATGCGGGCACTCACTCGATCGGAGAGGCAGAATGCACAAGACGAGG
* * * *
29435747 ATCGGCCCGGTCACCCCCTACGTGCTGTCGATCCTACTGTCGGAACCCTCAGTCCAG
628 ATCAGCCCGATCACCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCAGTCCAG
* * * * *
29435804 TCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCATTTGGGCA
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGCG
* * * ** * * * *
29435869 CTGAATCGGCCGGAGAGACATAATGTAC-AAATCAGGGATCGGCTTGATCCCCCTCTGCGTGCTG
66 CTGAACCAGCCGGAGAG--GTAAAATACGCAAGCAGGGATTGGCCTGATCCCCCTCTGCGTGCTG
* *
29435933 TCGGTCTCGCTGCCACAACCTTCAGTCCGACTGGGGCTTAGACTTGGAATGAACTCCCTATGCCT
129 TCGGTCTCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * * * * * *
29435998 AAGTCAACCCATGAAACGGGCATGTGGGAGCTGAGCCGACCGGAGAGGTAGAATGCGCAAGCCAG
194 AAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGG
* * * * * * * *
29436063 GGATCAGCCCGATCCCCCTGTGTGCTGTCGATCCTATTG-CTGCAACCCTCTGTCCGGTCTGATC
259 GGATCGGCTCGGTCCCCCTGTGTGCTGCCGATCTTACTGTC-GCAACCCTCGGTCTGGTCTGATC
*
29436127 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCCA
323 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* ** * *
29436192 CGAAACGAGCATGT-GGGCGCTTAGTCGGTCGGAGAGGCCGACCAGAGAGGCATAATGCACAAG-
388 CGAAACGAG--TGTCGGGCGCTCAGTCGACCGGAGAGGCCGATCAGAGAGGCATAATGCGCAAGC
* * * * * * * * *
29436255 T-CGAGGGTCAGCCCGATCTCCATCTGA-GTGCTACCGATCCCGTTGCCGATCTTG-TTGCCACA
451 TGCGA--ATCAGCCCGATCCCCCTCT-ACGTGCTGCCGATCCTGCTGTCGATCCTGCTAGCCACA
* *
29436317 ACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCTGTATGCTTAAGCCAACCCACAAAA
513 ACCCTCGGTCCGGA-TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA
* * * ** * ** * * * * * *
29436381 TGAACGTGCGGGTGCTCAGTCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGGTC-C
577 CGAGCATGCGGGCACTCACTCGATCGGAGAGGCAGAATGCACAAGACGAGGATCAGCCCGATCAC
* *
29436445 CCCC-GCGTGCTGTCAATCCT
642 CCCCTACGTGCTGTCGATCCT
29436465 GCTGTTGGTC
Statistics
Matches: 1120, Mismatches: 195, Indels: 95
0.79 0.14 0.07
Matches are distributed among these distances:
682 1 0.00
683 17 0.02
684 72 0.06
685 308 0.28
686 142 0.13
687 6 0.01
688 1 0.00
689 1 0.00
690 8 0.01
691 1 0.00
692 2 0.00
693 3 0.00
694 2 0.00
695 5 0.00
696 1 0.00
697 1 0.00
698 4 0.00
699 45 0.04
700 229 0.20
701 253 0.23
702 12 0.01
703 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (684 bp):
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGCG
CTGAACCAGCCGGAGAGGTAAAATACGCAAGCAGGGATTGGCCTGATCCCCCTCTGCGTGCTGTC
GGTCTCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGGGG
ATCGGCTCGGTCCCCCTGTGTGCTGCCGATCTTACTGTCGCAACCCTCGGTCTGGTCTGATCTTA
GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGTGTCGGGCGCTCAGTCGACCGGAGAGGCCGATCAGAGAGGCATAATGCGCAAGCTGCGA
ATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCTGCTGTCGATCCTGCTAGCCACAACCCTCGG
TCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGC
GGGCACTCACTCGATCGGAGAGGCAGAATGCACAAGACGAGGATCAGCCCGATCACCCCCTACGT
GCTGTCGATCCTACTATCGCAACCCTCAGTCCAG
Found at i:29435662 original size:26 final size:26
Alignment explanation
Indices: 29435624--29435676 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29435614 CCAGTCCGAT
*
29435624 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
29435650 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
29435676 C
1 C
29435677 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29435676 original size:198 final size:198
Alignment explanation
Indices: 29435333--29435826 Score: 491
Period size: 186 Copynumber: 2.6 Consensus size: 198
29435323 GGCGCTCAAC
* * ** * * * * *
29435333 CGATCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGCCAATCTT
1 CGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGATCCCCCCTGCGTACTGCCAATCCT
* ** ** * *
29435398 ACTGTCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAAGCTTGTATGGTTAGACTGGG
66 ACTGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAAACTTGTATGCTTAGACTGGG
* * * ** *
29435463 GATGAACTTCGTATGCCTAAGTCAACCCA-CAAAACGAGTGTACGGGCGCTCAGCCGACCGGAGA
131 AATGAACTCCGTATGCCTAAGCCAACCCACCAAAACGAGCATACGGGCACTCAGCCGACCGGAGA
29435527 GGT
196 GGT
* *
29435530 CGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGATCCCTCTCTGCGTACTGCCAATCC
1 CGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGATCCC-CCCTGCGTACTGCCAATCC
*
29435595 TGCTGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAAT-AAACTCTGTATGCTTAGACAT
65 TACTGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAAACT-TGTATGCTTAGAC-T
* *
29435659 -GGAATGAACTCCGTATGCCTAAGCCAACCCACCAAAATGAGCATGCGGGCACT--------C--
128 GGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAAACGAGCATACGGGCACTCAGCCGACCGG
29435713 --A-GT
193 AGAGGT
* * ** * * * * *
29435716 CGATCGGAGAGGCAGAATGCGTAAGTC-GAGGATCGGCCCGGTCACCCCCTACGTGCTGTCGATC
1 CGATCAGAGAGGCAGAATGCGTAAGCCAG-GGATCAACCCGATC-CCCCCTGCGTACTGCCAATC
*
29435780 CTACTGTCGGAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAA
64 CTACTGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAA
29435827 CTACGTATGC
Statistics
Matches: 252, Mismatches: 38, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
185 1 0.00
186 94 0.37
187 5 0.02
191 1 0.00
197 42 0.17
198 92 0.37
199 17 0.07
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (198 bp):
CGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGATCCCCCCTGCGTACTGCCAATCCT
ACTGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAAACTTGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCCACCAAAACGAGCATACGGGCACTCAGCCGACCGGAGA
GGT
Found at i:29435983 original size:701 final size:685
Alignment explanation
Indices: 29434226--29436254 Score: 2077
Period size: 701 Copynumber: 2.9 Consensus size: 685
29434216 GGTCTGGTTA
* * *
29434226 GATCTTAGACTGGGAATGAACT-TCGTATGCTTACAC-TGGGGATGAACTCCGTATGCCTAAGTC
1 GATCTTAGACTGGGAAT-AACTCT-GTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCC
* * * *
29434289 AACCCACAAAATGAGCATACGAGCGCTCAG-CTGGTCGGAGAGGCAGAATGCAAAAGCTGGGGAT
63 AACCCACAAAATGAGCATGCGGGCGCTCAGTC-GATCGGAGAGGCAGAATGCAAAAGC-GAGGAT
* * *
29434353 CGGCTCAGTCCCCCCTACATGCTGTCGATCCTGCTACTGGTCCTGCTGCCGTAACCCTCGGTCTG
126 CGGCTCGGTCCCCCCTACGTGCTGTCGAT-C--CTACT-G---T-C-G--G-AACCCTC-GTCCG
* * * *
29434418 ATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTTCGGGT
178 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGC
* ** * * * *
29434483 GCTGACCCA-CCGGAGAGGCATAATGCGCAAGCTGGGGATGGACCTGATCCCTCTCTACGTGTTG
243 GCTGAACCAGCCGGAGA-GCATAATGTACAAGC-AGGGATGG-CCTGATCCCCCTCTGCGTGCTG
* * * *
29434547 TCGGTCCCGTTACCACAACCCTCGGTCCGGA-TGGGGCTTAGACATGGAATGAACTCCCTATGCC
305 TCGGTCTCGCTGCCACAACCCTCAGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCC
* * * *
29434611 TAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCATAATGCGCAATTAG
369 TAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCG
* * *
29434676 GGGATCGGCTCGGTCCCCCTGCGTGCTGCCGATCTTACTGTCGCAACCCTCGGTCCT-ATCCGAT
434 GGGATCGGCTCGGTCCCCCTGTGTGCTGCCGATCTTACTGTCGCAACCCTCGGT-CTGGTCTGAT
** * * * * * *
29434740 CTTAGACTAAGAATGAACTCCGTAAGCTTAGACTGGGAATAAACTCCGTACGCCTAGGTCAACCC
498 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
29434805 ATGAAACAAAGCATGCGGGCGATCAGTCGACCGGAGAGGCCGGTCAGAGAGGCATAATGCGCAAG
563 ACGAAAC-GAGCATACGGGCGATCAGCCGACCGGAGAGGCCGATCAGAGAGGCAGAATGCGCAAG
* * * * * * *
29434870 CTGCGAATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCTGCTGTCGATCCTGCTAGC
627 CAGCGAATCAACCCGATCCCCCTCTACGTACTGCCAATCCTGCTGTCGACCCTGCCAGC
* ** * *
29434929 -A-C-AACCCTCGG--T--C-C-GGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
1 GATCTTAGACTGGGAATAACTCTGTAT---GCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * ** * * *
29434985 AACCCACGAAACGAGTGTAG-GGGCGCTTACTCGATCGGAGAGGCAGAATGCACAAGACGAGGA-
63 AACCCACAAAATGAGCAT-GCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCAAAAG-CGAGGAT
* * * * * * **
29435048 CTAGCTCGATCCCCCCTACGTGCTGTCGATCTTGCTATCGCAACCCTCGATCCGATTTGATCTTA
126 C-GGCTCGGTCCCCCCTACGTGCTGTCGATCCTACTGTCGGAACCCTCG-TCCGATCCGATCTTA
* * * *
29435113 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGAGCGTTGAGCCAGC
189 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGCGCTGAACCAGC
* ** * * * * ** *
29435178 CGGAGAG-GTAAAATACGCAAGCCGAGGATTAGCCCGGTCCCCCTCTGCGTGCTACCGATCTCGC
254 CGGAGAGCATAATGTA--CAAGCAG-GGA-TGGCCTGATCCCCCTCTGCGTGCTGTCGGTCTCGC
29435242 TGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
315 TGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * *
29435307 ATGAAATGGGCGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTC
380 ATGAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTC
* *
29435372 GGTCCCCCCTGTGTGCTGCCAATCTTACTGTCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGG
445 GGT-CCCCCTGTGTGCTGCCGATCTTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
* * *
29435437 AATGAAGCT-TGTATGGTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAG
509 AATGAA-CTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
** * * * * *
29435501 TGTACGGGCGCTCAGCCGACCGGAGAGGTCGATCGGAGAGGCAGAATGCGTAAGCCAG-GGATCA
573 CATACGGGCGATCAGCCGACCGGAGAGGCCGATCAGAGAGGCAGAATGCGCAAG-CAGCGAATCA
* *
29435565 ACCCGATCCCTCTCTGCGTACTGCCAATCCTGCTGTCGCAACCCTCAGTCCAGTCC
637 ACCCGATCCCCCTCTACGTACTGCCAATCCTGCTGTCG--ACCCT--G-CCAG--C
29435621 GATCTTAGACTGGGAATAAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAAT-AACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* **
29435686 CCCACCAAAATGAGCATGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCG
65 CCCA-CAAAATGAGCATGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCAAAAG-CGAGGATCG
*
29435751 GCCCGGTCACCCCCTACGTGCTGTCGATCCTACTGTCGGAACCCTCAGTCC-AGTCCGATCTTAG
128 GCTCGGTC-CCCCCTACGTGCTGTCGATCCTACTGTCGGAACCCTC-GTCCGA-TCCGATCTTAG
* * * * * * *
29435815 ACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCATTTGGGCACTGAATCGGCC
190 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGCGCTGAACCAGCC
* *
29435880 GGAGAGACATAATGTACAAATCAGGGATCGGCTTGATCCCCCTCTGCGTGCTGTCGGTCTCGCTG
255 GGAGAG-CATAATGTAC-AAGCAGGGAT-GGCCTGATCCCCCTCTGCGTGCTGTCGGTCTCGCTG
* * *
29435945 CCACAACCTTCAGTCCGACTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGTCAACCCAT
317 CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * * * * * *
29436010 GAAACGGGCATGTGGGAGCTGAGCCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGA
382 GAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGG
* * * * *
29436075 TCCCCCTGTGTGCTGTCGATCCTATTG-CTGCAACCCTCTGTCCGGTCTGATCTTAGACTGGGAA
447 TCCCCCTGTGTGCTGCCGATCTTACTGTC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
*
29436139 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCAT
511 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
** * * * ** * * *
29436204 GTGGGCGCTTAGTCGGTCGGAGAGGCCGACCAGAGAGGCATAATGCACAAG
576 ACGGGCGATCAGCCGACCGGAGAGGCCGATCAGAGAGGCAGAATGCGCAAG
29436255 TCGAGGGTCA
Statistics
Matches: 1084, Mismatches: 193, Indels: 101
0.79 0.14 0.07
Matches are distributed among these distances:
683 4 0.00
684 78 0.07
685 242 0.22
686 103 0.10
687 7 0.01
688 1 0.00
689 2 0.00
690 3 0.00
692 1 0.00
693 7 0.01
694 1 0.00
695 8 0.01
696 101 0.09
697 4 0.00
698 1 0.00
699 45 0.04
700 208 0.19
701 254 0.23
702 9 0.01
703 5 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (685 bp):
GATCTTAGACTGGGAATAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAATGAGCATGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCAAAAGCGAGGATCGGCT
CGGTCCCCCCTACGTGCTGTCGATCCTACTGTCGGAACCCTCGTCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGCGCTGAACCAGCCGGAGAG
CATAATGTACAAGCAGGGATGGCCTGATCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCACAACCC
TCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGC
GTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTGT
GTGCTGCCGATCTTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGT
ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGATC
AGCCGACCGGAGAGGCCGATCAGAGAGGCAGAATGCGCAAGCAGCGAATCAACCCGATCCCCCTC
TACGTACTGCCAATCCTGCTGTCGACCCTGCCAGC
Found at i:29436152 original size:157 final size:157
Alignment explanation
Indices: 29435650--29436152 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 157
29435640 ACTCTGTATG
* * * *
29435650 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACCAAAATGAGCATGCGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAATGAGCATGTGGGCACTGA
* * * *
29435714 GTCGATCGGAGAGGCAGAATGCGTAAGTC-GAGGATCGGCCCGGTCACCCCCTACGTGCTGTCGA
64 GTCGACCGGAGAGGCAGAATGCGCAAGTCAG-GGATCGGCCCGATC-CCCCCTGCGTGCTGTCGA
* *
29435778 TCCTACTG-TCGGAACCCTCAGTCCAGTCCGAT
127 TCCTACTGCT-GCAACCCTCAGTCC-GTCTGAT
* * *
29435810 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCATTTGGGCACTGAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCACTGAGT
* * * ** * ** *
29435875 CGGCCGGAGAGACATAATGTACAAATCAGGGATCGGCTTGATCCCCCTCTGCGTGCTGTCGGT-C
66 CGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATCC
* ** * * **
29435939 TCGCTGCCACAACCTTCAGTCCGACTGGGG
130 T-ACTGCTGCAACCCTCAGTCCGTCT-GAT
* * * * *
29435969 CTTAGACTTGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGGGCATGTGGG-AGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCA-CTGAG
* * * * *
29436033 CCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGAT-CCCCCTGTGTGCTGTCGATCC
65 TCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *
29436097 TATTGCTGCAACCCTCTGTCCGGTCTGAT
130 TACTGCTGCAACCCTCAGTCC-GTCTGAT
*
29436126 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
29436153 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 52 0.19
158 18 0.07
159 164 0.61
160 37 0.14
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCACTGAGT
CGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
ACTGCTGCAACCCTCAGTCCGTCTGAT
Found at i:29436155 original size:26 final size:26
Alignment explanation
Indices: 29436126--29436181 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
29436116 CCGGTCTGAT
*
29436126 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29436152 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29436178 CTTA
1 CTTA
29436182 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29436534 original size:26 final size:26
Alignment explanation
Indices: 29436505--29436557 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29436495 CCGGTCCAAT
29436505 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29436531 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29436557 C
1 C
29436558 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29437056 original size:26 final size:26
Alignment explanation
Indices: 29437006--29437058 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29436996 CTGATCTGGC
* **
29437006 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
29437032 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
29437058 C
1 C
29437059 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:29438112 original size:26 final size:26
Alignment explanation
Indices: 29438071--29438123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29438061 CCAGTTCAAT
29438071 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
29438097 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
29438123 C
1 C
29438124 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29438494 original size:26 final size:26
Alignment explanation
Indices: 29438465--29438517 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29438455 CCGGTCCAAT
*
29438465 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29438491 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29438517 C
1 C
29438518 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29438778 original size:158 final size:158
Alignment explanation
Indices: 29438503--29438794 Score: 374
Period size: 158 Copynumber: 1.8 Consensus size: 158
29438493 TAGACTGGGG
* *
29438503 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCAGGTGCTCAACCGGTCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTCCAGGTGCTCAACCGGTCGAAGAGG
* * * *
29438568 CTGAATGCACAAGTCGGGGATCGACCCGATCTACCCTGCATGCTGCCGATCCTACTGCCGTAACC
66 CAGAATGCACAAGCCGGGGATCGACCCGATCCACCCTGCATACTGCCGATCCTACTGCCGTAACC
29438633 CTCGGTCCAAATGGGGCTTAAACATGGA
131 CTCGGTCCAAATGGGGCTTAAACATGGA
* * * * *
29438661 ATGAACTCCCTATGCCTAAGCCAACCGATGAAAC-AGGTGTGCGGGCT-CTCAGCCGGTC-AGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-GCGTCCAGG-TGCTCAACCGGTCGA-AG
* * * ** * *
29438723 AGGCAGAATGCGCAAGCCGGGGATTGACCCGATCCCCCCTGTGTACTGCCGATCCTGCTGCTGTA
63 AGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCTGCATACTGCCGATCCTACTGCCGTA
29438788 ACCCTCG
128 ACCCTCG
29438795 ATTCAGTTCG
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
157 2 0.02
158 110 0.97
159 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTCCAGGTGCTCAACCGGTCGAAGAGG
CAGAATGCACAAGCCGGGGATCGACCCGATCCACCCTGCATACTGCCGATCCTACTGCCGTAACC
CTCGGTCCAAATGGGGCTTAAACATGGA
Found at i:29438820 original size:158 final size:158
Alignment explanation
Indices: 29438490--29438827 Score: 351
Period size: 158 Copynumber: 2.1 Consensus size: 158
29438480 AATTCCATAT
* * * *
29438490 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCAGGTGCTCAA
1 GCTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTCCAGGTGCTCAA
* * * *
29438555 CCGGTCGAAGAGGCTGAATGCACAAGTCGGGGATCGACCCGATCTACCCTGCATGCTGCCGATCC
66 CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCTGCATACTGCCGATCC
* * *
29438620 TACTGCCGTAACCCTCGGTCCAAATGGG
131 TACTGCCGTAACCCTCGATCCAAATCGA
* * * * *
29438648 GCTTAAACAT-GGAATGAACTCCCTATGCCTAAGCCAACCGATGAAAC-AGGTGTGCGGGCT-CT
1 GCTTAGA-ATGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-GCGTCCAGG-TGCT
* * * * **
29438710 CAGCCGGTC-AGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGATCCCCCCTGTGTACTGCCG
63 CAACCGGTCGA-AGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCTGCATACTGCCG
* * * **
29438774 ATCCTGCTGCTGTAACCCTCGATTCAGTTCGA
127 ATCCTACTGCCGTAACCCTCGATCCAAATCGA
* *
29438806 TCTTAGATTGGGAATGAACTCC
1 GCTTAGAATGGGAATGAACTCC
29438828 GTATACTTAG
Statistics
Matches: 145, Mismatches: 30, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 140 0.97
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTCCAGGTGCTCAA
CCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCTGCATACTGCCGATCC
TACTGCCGTAACCCTCGATCCAAATCGA
Found at i:29439032 original size:26 final size:26
Alignment explanation
Indices: 29439003--29439055 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29438993 CCAGTCCGAT
*
29439003 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAAATCCGTATG
29439029 CTTAGACATGGAATGAAATCCGTATG
1 CTTAGACATGGAATGAAATCCGTATG
29439055 C
1 C
29439056 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:29439109 original size:196 final size:188
Alignment explanation
Indices: 29438775--29439279 Score: 556
Period size: 196 Copynumber: 2.6 Consensus size: 188
29438765 GTACTGCCGA
* * * *
29438775 TCCTGCTGCTGTAACCCTCGATTCAGTTCGATCTTAGATTGGGAATGAACTCCGTATACTTAGAC
1 TCCTGCTGC-G-AACCCTCG-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** * *
29438840 AAGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGTGCGCTCAGCCAACCGG
63 ATGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCAACCGG
* *** *
29438905 AGAGGCAGAATGCGCAAGCTGGGGATCGA-CTCGGTCCCCCCTACGTGCTACCAATCTTGCTGCT
128 AAAGGCAGAATGCGCAAGCCAAGGATCGATCT-GATCCCCCCTACGTGCTACCAATC---CTGCT
29438969 GGTCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
1 --TCCTGCTG-CG-AACCCTC-GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
29439034 ACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACC
61 ACATGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCAACC
* * **
29439099 GGAAAGGCAGAATGTGCAAGCCAAGGATCGATCTGATCCCCCCTGCGTGCTGTCAATCCTGCT
126 GGAAAGGCAGAATGCGCAAGCCAAGGATCGATCTGATCCCCCCTACGTGCTACCAATCCTGCT
* * * *
29439162 ACC-G-T---AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TT
1 TCCTGCTGCGAACCCTC-GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
* * *
29439221 AGGGATGTACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGCGCTCAACCA
65 -GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCA
29439280 GTCAGAGAGG
Statistics
Matches: 266, Mismatches: 39, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
183 1 0.00
184 98 0.37
189 1 0.00
190 1 0.00
191 2 0.01
193 5 0.02
196 154 0.58
197 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (188 bp):
TCCTGCTGCGAACCCTCGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG
GGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCAACCGGAAA
GGCAGAATGCGCAAGCCAAGGATCGATCTGATCCCCCCTACGTGCTACCAATCCTGCT
Found at i:29439216 original size:26 final size:26
Alignment explanation
Indices: 29439187--29439239 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29439177 CCGGTCTGAT
29439187 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
29439213 CTTAGATTAGGGATGTACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
29439239 C
1 C
29439240 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:29439899 original size:26 final size:26
Alignment explanation
Indices: 29439870--29439920 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29439860 AGGTCTGATC
*
29439870 TTAGAATGGGAATGAACTCTGTATGG
1 TTAGAATGGGAATGAACTCCGTATGG
* *
29439896 TTAGACTGGGGATGAACTCCGTATG
1 TTAGAATGGGAATGAACTCCGTATG
29439921 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGG
Found at i:29440108 original size:26 final size:26
Alignment explanation
Indices: 29440067--29440119 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29440057 CCGATCTGAT
*
29440067 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
29440093 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29440119 C
1 C
29440120 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29440281 original size:26 final size:26
Alignment explanation
Indices: 29440252--29440304 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29440242 CCGATCCGAT
*
29440252 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
* * *
29440278 CTTAGACTGGGGATGAACACTGTATG
1 CTTAGACTAGGAATGAACACCGTATG
29440304 C
1 C
29440305 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:29440407 original size:185 final size:185
Alignment explanation
Indices: 29439973--29440412 Score: 592
Period size: 185 Copynumber: 2.4 Consensus size: 185
29439963 TCGGAGAGGT
* * *
29439973 CGGTCGGAGAGGCATAATGCACAAGCTGGGGATAAGCCCGATCCACCTCTGCGTGCTACCGATCT
1 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATAAGCCCGATCCACCTCTGCGTGCTATCGATCC
* * * *
29440038 TGCTACTGCAACCCTTGCTCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGG
66 TGCTACAGCAACCCCTGCTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
29440103 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGAGTACTCAAT
131 GGATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCATACGAGCACGCAAC
* * * * *
29440158 CGATCGGAGAGGCATAATGCGCAGGCTGGGGATAAGCTCGGTCCACCTCTACGTGCTATCGATCC
1 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATAAGCCCGATCCACCTCTGCGTGCTATCGATCC
* *
29440223 TGCTGCAGCAACCCCTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
66 TGCTACAGCAACCCCTGCTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
* * * *
29440288 GGATGAACACTGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCGCAAC
131 GGATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCATACGAGCACGCAAC
* ** * * * *
29440343 CGGTCGGAGAGGTATAATGCGCAAGCCAGGGATCAGCCCAATCCCCCTCTGCGTGCTGTCGATCC
1 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATAAGCCCGATCCACCTCTGCGTGCTATCGATCC
*
29440408 CGCTA
66 TGCTA
29440413 TCGGTCCTGC
Statistics
Matches: 217, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
185 217 1.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATAAGCCCGATCCACCTCTGCGTGCTATCGATCC
TGCTACAGCAACCCCTGCTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCATACGAGCACGCAAC
Found at i:29440670 original size:26 final size:26
Alignment explanation
Indices: 29440619--29440671 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29440609 CTGGTCCAAT
* *
29440619 CTTAGACTAGGAATGACCTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
29440645 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTCCATATG
29440671 C
1 C
29440672 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29442204 original size:159 final size:158
Alignment explanation
Indices: 29441902--29442396 Score: 381
Period size: 159 Copynumber: 3.1 Consensus size: 158
29441892 ACTCCGTATG
* * * * * *
29441902 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCAACGAAACAGA-CATGCAGGCACTCA
** * * * ** * * * * **
29441965 GCTGGCCGAAGAGGTAGAATGCGCAAGTTGGGGATCGACCTGATCCCCCCTTGCGTGCTGTCGAT
64 GCCAGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCTCC-TGCGTGCTACCGAT
****
29442030 CCTGCTATTGTAACCCTCGGTCTGGTCTGAT
128 CCTGCTACCACAACCCTCGGTCTGGTCTGAT
* * * * * *
29442061 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAGCCCATGAAACTAG-CATGTAGGCACTGAG
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACGAAAC-AGACATGCAGGCACTCAG
** * * * * * * *
29442125 CTGGTCGAAGAGGCATAATGTGTAAGCCGAGGATCGGCTCGATCCCCTTCTGCGTGCTGCTGGTC
65 CCAGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGAT-CCCTCCTGCGTGCTACCGATC
* * **
29442190 TTGCTGCCACAACCCTCGGT-TCGGT-TGGGG
129 CTGCTACCACAACCCTCGGTCT-GGTCT-GAT
* * * *
29442220 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGACGTGCAGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCAACGAAACAGACATGCAGGCACTCAG
* * *
29442284 CCAGTCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTACCGATCC
65 CCAGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCTCCTGCGTGCTACCGATCC
* ** * * *
29442349 TGCTACCGCAACCCTCGACCCGATCCGAT
130 TGCTACCACAACCCTCGGTCTGGTCTGAT
29442378 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
29442397 TCGTATGCTT
Statistics
Matches: 259, Mismatches: 66, Indels: 23
0.74 0.19 0.07
Matches are distributed among these distances:
157 1 0.00
158 56 0.22
159 196 0.76
160 5 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACGAAACAGACATGCAGGCACTCAGC
CAGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCTCCTGCGTGCTACCGATCCT
GCTACCACAACCCTCGGTCTGGTCTGAT
Found at i:29442419 original size:26 final size:25
Alignment explanation
Indices: 29442374--29442429 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
29442364 CGACCCGATC
29442374 CGAT-CTTAGACTGGGAATGAACTT
1 CGATGCTTAGACTGGGAATGAACTT
29442398 CGTATGCTTAGACT-GGACATGAACTT
1 CG-ATGCTTAGACTGGGA-ATGAACTT
29442424 CGATGC
1 CGATGC
29442430 CTATGTCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
24 2 0.07
25 9 0.31
26 18 0.62
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (25 bp):
CGATGCTTAGACTGGGAATGAACTT
Found at i:29444618 original size:26 final size:26
Alignment explanation
Indices: 29444582--29444634 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29444572 GTTGGCTTAG
*
29444582 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29444608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29444634 G
1 G
29444635 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29444777 original size:184 final size:184
Alignment explanation
Indices: 29444559--29445186 Score: 617
Period size: 184 Copynumber: 3.3 Consensus size: 184
29444549 GCGCTTGCAT
*
29444559 GCTCA-TTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
1 GCTCATTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* *
29444623 TCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGTAGGACCAGTAGCTCGTAGA-GGGGA
66 TCCCAGTCTAAGATC-GATCGGATCGAGGGTTGCGGCAGCAGGACCAGTAGCTCGTAGAGGGGGA
* * *
29444687 CTGGGTCGATCCTCGACTTACGCATGTTGCCTCTCCGGTCGGCTGAGCACCGGCAC
130 CTGGGTCGATCCCCGACTTGCGCAT-TTGCCTCTCCGGTCGGCTGAGCACCCGCAC
* *
29444743 GCTC-TTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTCAT
1 GCTCATTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * * *
29444807 TCCCAGTCTAAGATCAGATCGGACCGAGGGTTACAGCAGCAGGATCAGCAGTAGGATCGGTAGCA
66 TCCCAGTCTAAGATC-GATCGGATCGAGGGTTGCGGCAGCAGGA-C--CAGTA-GCTC-GT---A
29444872 CGGAGGGGGGA-TCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACCTCTTCGATC
122 --GA-GGGGGACT-GGGTCGATCCCCGACTTGCGCATT-TGCCTCTCCGGTCG--------G--C
**
29444936 GGTTGAGTGCCCGCAC
172 ---TGAGCACCCGCAC
* * *
29444952 GCTCGTTTT-GTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAC-GAGTTCA
1 GCTCATTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCA
* * * ** * *
29445014 TTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGCAGGAGGATCAACAGCACGCA-AGGGGG
65 TTCCCAGTCTAAGATCGATC-GGATCGAGGGTTGCGGCAGCAGGACCAGTAGCTCGTAGAGGGGG
* * * * *
29445078 ACAGGGCCAATCCCCGACTTGTGCATTTTGCCTCTCCGGTCGGCTGAGCACCCTCAC
129 ACTGGGTCGATCCCCGACTTGCGCA-TTTGCCTCTCCGGTCGGCTGAGCACCCGCAC
* *
29445135 G-TCCATTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGC
1 GCT-CATTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29445187 CCCAGTCAGA
Statistics
Matches: 366, Mismatches: 42, Indels: 72
0.76 0.09 0.15
Matches are distributed among these distances:
182 1 0.00
183 19 0.05
184 132 0.36
185 1 0.00
186 1 0.00
187 5 0.01
188 4 0.01
189 2 0.01
192 1 0.00
194 2 0.01
195 2 0.01
196 79 0.22
197 3 0.01
200 1 0.00
203 1 0.00
204 3 0.01
205 3 0.01
206 1 0.00
207 3 0.01
208 43 0.12
209 52 0.14
210 7 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (184 bp):
GCTCATTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGATCGGATCGAGGGTTGCGGCAGCAGGACCAGTAGCTCGTAGAGGGGGAC
TGGGTCGATCCCCGACTTGCGCATTTGCCTCTCCGGTCGGCTGAGCACCCGCAC
Found at i:29444799 original size:26 final size:26
Alignment explanation
Indices: 29444769--29444818 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29444759 GGCTTAGGCA
29444769 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
29444795 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
29444819 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:29445013 original size:25 final size:26
Alignment explanation
Indices: 29444975--29445026 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
29444965 GTTGACTTAG
29444975 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29445001 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29445026 G
1 G
29445027 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29445354 original size:26 final size:26
Alignment explanation
Indices: 29445318--29445370 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29445308 GTTGGCTTAG
**
29445318 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
29445344 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29445370 G
1 G
29445371 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29446254 original size:26 final size:26
Alignment explanation
Indices: 29446225--29446274 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
29446215 TTGACTTACT
*
29446225 CATATGGAGTTCATCCCCAGTCTAGG
1 CATACGGAGTTCATCCCCAGTCTAGG
*
29446251 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATCCCCAGTCTA
29446275 AGATTGAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAGG
Found at i:29446753 original size:26 final size:26
Alignment explanation
Indices: 29446716--29446773 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
29446706 CGTGGGTTGG
29446716 CTAAGGCATACGGAGTTCATTC-CATGT
1 CTAA-GCATACGGAGTTCATTCTCA-GT
29446743 CTAAGCATACGGAGTTCATTCTCAGT
1 CTAAGCATACGGAGTTCATTCTCAGT
29446769 CTAAG
1 CTAAG
29446774 ATTGGACCGG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCTCAGT
Found at i:29447118 original size:157 final size:158
Alignment explanation
Indices: 29446880--29447259 Score: 440
Period size: 157 Copynumber: 2.4 Consensus size: 158
29446870 CTCCGACCGG
* * * *
29446880 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCCCTAGTCTAAG
1 CTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCAT-GTCTAAG
** * * *
29446944 ATCATACCGGACCGAGGGTTGTGGTAGCAGGATC-GATAGCACGTAGA-GGGGACCAGG-TCGA-
65 ATCATA-CAAACAGAGGGTTGTGGTAGCAGGATCAG-CAGCACGTAGAGGGGGACCGGGCT-GAT
* * *
29447005 TCCTCG-GTTTCGTATTCTACCTCTCCGGTCTG-
127 TCCT-GACTTACGCATTCTACCTCTCCGGT-TGA
29447037 CTGAG-TGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAA
1 CTGAGCT-CCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAA
* * * *
29447100 GCCTCAGT-CAAACAGAGGGTTGTGGTAGCATGATCAGCAGGATGTAGAGGGGGACCGGGCTGAT
64 G-ATCA-TACAAACAGAGGGTTGTGGTAGCAGGATCAGCAGCACGTAGAGGGGGACCGGGCTGAT
29447164 TCCTGACTTACGCATTCTACCTCTCCGGTTGA
127 TCCTGACTTACGCATTCTACCTCTCCGGTTGA
29447196 CTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAG
1 CTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAAGTTCATTCCATGTCTAAG
29447260 TATATGGAGT
Statistics
Matches: 193, Mismatches: 16, Indels: 26
0.82 0.07 0.11
Matches are distributed among these distances:
156 1 0.01
157 83 0.43
158 22 0.11
159 83 0.43
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (158 bp):
CTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGA
TCATACAAACAGAGGGTTGTGGTAGCAGGATCAGCAGCACGTAGAGGGGGACCGGGCTGATTCCT
GACTTACGCATTCTACCTCTCCGGTTGA
Found at i:29448495 original size:26 final size:26
Alignment explanation
Indices: 29448445--29448497 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29448435 GTTGGCTTAG
*
29448445 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
29448471 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
29448497 G
1 G
29448498 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:29449160 original size:159 final size:159
Alignment explanation
Indices: 29448883--29449354 Score: 423
Period size: 159 Copynumber: 3.0 Consensus size: 159
29448873 TTAAGATCAA
** * * * * * * *
29448883 ACCAGACCGAGGGTTGTGACAGCAGGATCGGCAGCATGCAGG-GGGGACCGGGTCGATCCCCAGC
1 ACCAGACTAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGAGGGGACCGAGCCGATCCCCAAC
* ** * * * ** * ** * * *
29448947 TTATGCATTATGCCTCTCGGGCTAGCTGAGTGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCA
66 TTACGCATTATGCCTCTAAGACCAGCTCAGCACCCGAACACTCGTTTCGTGGGTTGGCTTAGGCA
*
29449012 TAGGGAGTTCATTCCATGTCTAAGCCCTAG
131 TACGGAGTTCATTCCATGTCTAAGCCC-AG
* * * ** *
29449042 -CCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGTA-GAGGGGGACCGAGTTGATCCCCAG
1 ACCAGACTAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGA-GGGGACCGAGCCGATCCCCAA
* ** * ** *
29449105 TTTGTGCATTATGCCTCTTAAG-CCGGCTCAGCACCCGAACGTTCGTTTCGTGGGTTGACTTAGG
65 CTTACGCATTATGCCTC-TAAGACCAGCTCAGCACCCGAACACTCGTTTCGTGGGTTGGCTTAGG
**
29449169 CATACGGAGTTCATTCCCA-GTCTAAGATCAG
129 CATACGGAGTTCATT-CCATGTCTAAGCCCAG
* * *
29449200 ACCAGACTAAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGAGGGGACCGGGCCGATCCCCAAC
1 ACCAGACTAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGAGGGGACCGAGCCGATCCCCAAC
* ** * * * *
29449265 TTACGCATTCTGCCTCTCCGATCAGCTGAGCGCCCGAACACTCGTTTCGTGGGTTGGCTTAAGCA
66 TTACGCATTATGCCTCTAAGACCAGCTCAGCACCCGAACACTCGTTTCGTGGGTTGGCTTAGGCA
*
29449330 TACAGAGTTCATTCCATGTCTAAGC
131 TACGGAGTTCATTCCATGTCTAAGC
29449355 ATATGGAGTT
Statistics
Matches: 252, Mismatches: 53, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 39 0.15
159 205 0.81
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (159 bp):
ACCAGACTAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGAGGGGACCGAGCCGATCCCCAAC
TTACGCATTATGCCTCTAAGACCAGCTCAGCACCCGAACACTCGTTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCAG
Found at i:29449363 original size:26 final size:26
Alignment explanation
Indices: 29449324--29449379 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
29449314 TGGGTTGGCT
29449324 TAAGCATACAGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
**
29449350 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
29449376 TAAG
1 TAAG
29449380 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:29449907 original size:26 final size:26
Alignment explanation
Indices: 29449877--29449929 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29449867 GTTGACTTAG
*
29449877 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29449903 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29449929 G
1 G
29449930 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29450630 original size:26 final size:26
Alignment explanation
Indices: 29450601--29450660 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
29450591 GTTGACTTAG
29450601 GCATATGGACTTCATCCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGTCTAA
* *
29450627 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGTCTAA
29450653 G-AT-TGGAC
1 GCATATGGAC
29450661 CGGACTGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATATGGACTTCATCCCCAGTCTAA
Found at i:29451141 original size:26 final size:26
Alignment explanation
Indices: 29451093--29451142 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29451083 GGCTTAGGCA
*
29451093 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATGCCTAAGCG
29451119 TACGGAGTTCATTCCCA-GCCTAAG
1 TACGGAGTTCATT-CCATGCCTAAG
29451143 ATCAGATCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGCCTAAGCG
Found at i:29451423 original size:13 final size:13
Alignment explanation
Indices: 29451405--29451429 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29451395 TATGCATTAT
29451405 GCCTCTCCGACTA
1 GCCTCTCCGACTA
29451418 GCCTCTCCGACT
1 GCCTCTCCGACT
29451430 GACTGAGCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.48, G:0.16, T:0.24
Consensus pattern (13 bp):
GCCTCTCCGACTA
Found at i:29451506 original size:26 final size:26
Alignment explanation
Indices: 29451469--29451521 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29451459 GTTGACTTAG
*
29451469 GCATACATAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
29451495 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29451521 G
1 G
29451522 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29452020 original size:26 final size:26
Alignment explanation
Indices: 29451969--29452021 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29451959 GTTGGCTTAG
*
29451969 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
29451995 GCATACGGAGTTGATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
29452021 G
1 G
29452022 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:29452341 original size:879 final size:865
Alignment explanation
Indices: 29450590--29452719 Score: 2411
Period size: 879 Copynumber: 2.4 Consensus size: 865
29450580 TCATTTCGTT
* * * **
29450590 GGTTGACTTAGGCATATGGACTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
** * ** * * * *
29450655 TTGGACCGGACTGAGGGTTGCAACAGCAAGATC-AGTAGCACGTAGGGGGGACCGGATCGATCCT
66 TCAGACCGGACCGAGGGTTGCTGCAGCAAGATCGA-CAGCACGCAGGGGGGACTGGGTCGATCCT
* *
29450719 CGGCTTACGCATTCTGCCTCTCCGTCCGACTGAG-TGCCCGTACA-CCCGTTTTGTGGGTTGGCT
130 CGGCTTGCGCATTCTGCCTCTCCGT-CGACTGAGCT-CCC--ACAGCCCGTTTCGTGGGTTGGCT
* * * *
29450782 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCTAGGGTTGTGGTAGCGGGACTG
191 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CTAGGGTTGTTGCAGCGGGACCG
** * * * * * * *
29450847 GCAGCATGCAGACGGGGATCAGGCCAATCCCCGGCTTGCACATTATACCTCT-CTGACAGACTCA
255 ATAGCACGCAGACGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCAG-CAGGCTTA
* * * * * * *
29450911 GCGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCGG
319 GCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG
* ** * *
29450976 ATCGAACTAAGGGTTACGACAGCACGCAGGGGGGACCGAGCCGGGCCACAGCTTGCGCATTCTGC
384 ATCAAAAAAAGGGTTACGACAGCACACAGGGGGGACCGAGCCGAGCCACAGCTTGCGCATTCTGC
* * * *** *
29451041 CTTTTCGGTCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
449 CTCTCCGCTCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
29451106 CCATGTCTAAGCGTACGGAGTTCATTCCCAGCCTAAGATCAGATCGAACCGAGGGTTGCCGTAGC
514 CCATGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGCTTACCGCAGC
* *
29451171 AGGACCAGCAGCAAGATCGACAGCATGCAGGGGGGACCGAGTCGATCATCGACTTACGTATTCTA
579 AGGACCAGCAGCAAGATCGACAGCATGCAGGGGGGACCGAGTCAATCATCGACTTACGCATTCTA
* * *
29451236 CCTCTCCGACAACTGAGCGCCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT
644 CCTCTCCAACAACTGAGCACCAGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT
* * * * *
29451301 CCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGCAGCAAGATCGACAGCGGGATCGGCAGCAC
709 CCATGTCTAAGCCCCAGCCAGATCGAAGGTTATCGCAGCAAGATCGACAGCAGGATCGACAGCAC
** * * * * * * *
29451366 ACAGAGGGGGCCCGGGCTGATCCCTAGCTTATGCATTATGCCTCTCCGACTAGCCTCTCCGACTG
774 ACAGAGAAGGACCAGGCTGATCCCGAGCTTACGCATTATGCCTCTCCGACGAGCCTCTCAGACCG
* *
29451431 ACTGAGCGTCCACACACTCATTTCGTG
839 ACTGAGCGTCCACACACTAATTTCATG
**
29451458 GGTTGACTTAGGCATACATAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* * * *
29451523 TCAGACCAGACCGAGGGTTGCTGCCGTAAGATCGACAGCATGCAGGGGGGACTGGGTCGATCCTC
66 TCAGACCGGACCGAGGGTTGCTGCAGCAAGATCGACAGCACGCAGGGGGGACTGGGTCGATCCTC
* * *
29451588 GGCTTGCGCATTCTGCCTCTCCGGTCGATTGAGCTCCCACAGGCCCGTTTCATGGGTTCGCTTAG
131 GGCTTGCGCATTCTGCCTCTCC-GTCGACTGAGCTCCCACA-GCCCGTTTCGTGGGTTGGCTTAG
* *
29451653 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTTGCAGCGAGACCGATA
194 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACT-AGGGTTGTTGCAGCGGGACCGATA
* * *
29451718 GCACGCAGATGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCAGCCGGCTTAGCAC
258 GCACGCAGACGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCAGCAGGCTTAGCAC
* *
29451783 TCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CA
323 CCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCA
* * * * * *
29451847 AAAAAAGGGTTGGGGCAGCAAGATCAATAGCGCACAGGGGGGACTGGGTCGATCCCCAGCTTGCG
388 AAAAAAGGGTT-----A-C--GA-C---AGCACACAGGGGGGACCGAGCCGAGCCACAGCTTGCG
* * ** **
29451912 CATTCTGCCTCTCCGACT-AACTGAGTGCCCGCACGTTCGTTTTGTTTGTTGGCTTAGGCATACG
441 CATTCTGCCTCTCCG-CTCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
29451976 GAGTTCATTCCATGTCTAAGCATACGGAGTTGATTCCCAGCCTAAGATCGGACCGGACCGAGGCT
505 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGCT
* * * * * * * * *
29452041 TACGGCAGTAGGACCAGCAGCAGGATCGGCAGCATGCAGGGGGGATCGGGTCAATCCTTGACTTG
570 TACCGCAGCAGGACCAGCAGCAAGATCGACAGCATGCAGGGGGGACCGAGTCAATCATCGACTTA
* * * ** **
29452106 CGCATTCTACCTCTCCAATAGCTGAGTACTTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACA
635 CGCATTCTACCTCTCCAACAACTGAGCACCAGCACACTCATTTCGTGGGTTGGCTTAGGCATACA
* * *
29452171 GAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAAGGTTATCGCAGTAGGATC-AGCAGCAGGA
700 GAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAAGGTTATCGCAGCAAGATCGA-CAGCAGGA
* * * *
29452235 TCGACAGCACGCAGAGAAGGACCAGGCTGATCCCCGA-CTTACGGATTATGCCTTTCCGGTCGA-
764 TCGACAGCACACAGAGAAGGACCAGGCTGAT-CCCGAGCTTACGCATTATGCCTCTCC-GACGAG
* * *
29452298 CCTCTCAGGCCGACTGAGTG-CCA-ATACGTGAATTTCATG
827 CCTCTCAGACCGACTGAGCGTCCACACAC-T-AATTTCATG
* * *
29452337 GGTTGACTTAAGCGTACGGAGTTCAT-CCTCAGTCTAAGCATACAGAGTTCGTTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATCCCT-AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
* * * * * *
29452401 ATCAGATCGGACCAAGGGTTGCTGTAGCAGGATCGACAGCACGCAGGAGGGACTGGGCCGATCCT
65 ATCAGACCGGACCGAGGGTTGCTGCAGCAAGATCGACAGCACGCAGGGGGGACTGGGTCGATCCT
* *
29452466 CGGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCTCCCACACGCCTGTTTCGTGGGTTGGCTTA
130 CGGCTTGCGCATTCTGCCTCTCC-GTCGACTGAGCTCCCACA-GCCCGTTTCGTGGGTTGGCTTA
** *
29452531 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGGGGGTTGTTGCAACGGGACC-AG
193 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CTAGGGTTGTTGCAGCGGGACCGA-
* ** * * * ** *
29452595 TAGAACATAGACGGGGA-CTGGACCGATCCCTGGCTTGCACATTATGCCTCTCCGGTTGGTTTAG
256 TAGCACGCAGACGGGGATC-GGGCCGATCCCCGGCTTGCACATTATGCCTCTCCAGCAGGCTTAG
* * *
29452659 CACCCGA-ACGCTCGTTTCATGGGTTGACATAGGCATACGAAGTTCATTCCCTA-TCTAAGAT
320 CACCC-ACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAAGAT
29452720 TGGATCGAAC
Statistics
Matches: 1057, Mismatches: 174, Indels: 51
0.82 0.14 0.04
Matches are distributed among these distances:
866 3 0.00
867 12 0.01
868 317 0.30
869 6 0.01
872 1 0.00
873 1 0.00
875 2 0.00
876 1 0.00
877 3 0.00
878 10 0.01
879 687 0.65
880 14 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (865 bp):
GGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTGCTGCAGCAAGATCGACAGCACGCAGGGGGGACTGGGTCGATCCTC
GGCTTGCGCATTCTGCCTCTCCGTCGACTGAGCTCCCACAGCCCGTTTCGTGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTAGGGTTGTTGCAGCGGGACCGATAGCA
CGCAGACGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCAGCAGGCTTAGCACCCA
CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAAAA
AAAGGGTTACGACAGCACACAGGGGGGACCGAGCCGAGCCACAGCTTGCGCATTCTGCCTCTCCG
CTCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGCTTACCGCAGCAGGACCA
GCAGCAAGATCGACAGCATGCAGGGGGGACCGAGTCAATCATCGACTTACGCATTCTACCTCTCC
AACAACTGAGCACCAGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
TAAGCCCCAGCCAGATCGAAGGTTATCGCAGCAAGATCGACAGCAGGATCGACAGCACACAGAGA
AGGACCAGGCTGATCCCGAGCTTACGCATTATGCCTCTCCGACGAGCCTCTCAGACCGACTGAGC
GTCCACACACTAATTTCATG
Found at i:29452375 original size:26 final size:26
Alignment explanation
Indices: 29452345--29452400 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
29452335 TGGGTTGACT
* *
29452345 TAAGCGTACGGAGTTC-ATCCTCAGTC
1 TAAGCATACAGAGTTCGATCC-CAGTC
*
29452371 TAAGCATACAGAGTTCGTTCCCAGTC
1 TAAGCATACAGAGTTCGATCCCAGTC
29452397 TAAG
1 TAAG
29452401 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCGATCCCAGTC
Found at i:29453362 original size:26 final size:26
Alignment explanation
Indices: 29453326--29453375 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29453316 GGCTTAGGCA
29453326 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
29453352 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
29453376 GTCAGACAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:29453730 original size:159 final size:158
Alignment explanation
Indices: 29453482--29453866 Score: 359
Period size: 159 Copynumber: 2.4 Consensus size: 158
29453472 CCCCGATCAG
** * * * * * * * * *
29453482 CCTCTCCGGTTGGCTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGGATAGGGAGTTCAT
1 CCTCTCCGGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTAAGGCATACGAAGTTCAT
* ** * ** * *
29453547 T-GCATGTCTAAGCCCCAG-CCGGACCAAGGGTAGTGGCAGCAGGACCGATAGCAC-TTAGAGGG
66 TCCCA-GTCTAAG-ATCAGACTGGACCAAGGGTAGCAGCAGCAGGACCGACAGCACGCT-G-GGG
* *
29453609 GGA-TCGAGCC-GATCCCCGGCTTGCGCATTATG
127 GGACT-GAGCCAG-TCCCCGACTTGCGCATTATA
*
29453641 CCTCTCCGGCCGGCTT-AGCGCCCGCACGCTCATTTCATGGGTTGACTAAGGCATACGAAGTTCA
1 CCTCTCCGGCCGG-TTGAGCACCCGCACGCTCATTTCATGGGTTGACTAAGGCATACGAAGTTCA
* * *
29453705 TTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCTGGGGGGA
65 TTCCCAGTCTAAGATCAGACTGGACCAAGGGTAGCAGCAGCAGGACCGACAGCACGCTGGGGGGA
* *
29453770 CTGAGCCAGTCCTCGACTTGCGCATTCTA
130 CTGAGCCAGTCCCCGACTTGCGCATTATA
* * * * * * *
29453799 CCTCTCCGGGCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCAT
1 CCTCTCCGGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTAAGGCATACGAAGTTCAT
29453864 TCC
66 TCC
29453867 ATCTCTAAGC
Statistics
Matches: 184, Mismatches: 35, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 87 0.47
159 91 0.49
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
CCTCTCCGGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGACTAAGGCATACGAAGTTCAT
TCCCAGTCTAAGATCAGACTGGACCAAGGGTAGCAGCAGCAGGACCGACAGCACGCTGGGGGGAC
TGAGCCAGTCCCCGACTTGCGCATTATA
Found at i:29453874 original size:158 final size:159
Alignment explanation
Indices: 29453482--29453877 Score: 410
Period size: 158 Copynumber: 2.5 Consensus size: 159
29453472 CCCCGATCAG
** * * * * *
29453482 CCTCTCCGGTTGGCTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGGATAGGGAGTTCAT
1 CCTCTCCGGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * *
29453547 TGCATGTCTAAGCCCCAGCCGGACCAAGGGTAGTGGCAGCAGGACCGATAGCACTTAGAGGGGGA
66 TCCATGTCTAAGCACCAGCCGGACCAAGGGTAGCAGCAGCAGGACCGACAGCACCTAGAGGGGGA
* *
29453612 TCGAGCCGATCCCCGGCTTGCGCATTATG
131 TCGAGCCGATCCCCGACTTGCGCATTATA
* * * * *
29453641 CCTCTCCGGCCGGCTT-AGCGCCCGCACGCTCATTTCATGGGTTGACTAAGGCATACGAAGTTCA
1 CCTCTCCGGCCGG-TTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
29453705 TTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCT-G-GG
65 TT-CCATGTCTAAGCACCAG-CCGGACCAAGGGTAGCAGCAGCAGGACCGACAGCAC-CTAGAGG
* *
29453766 GGGA-CTGAGCC-AGTCCTCGACTTGCGCATTCTA
127 GGGATC-GAGCCGA-TCCCCGACTTGCGCATTATA
* * *
29453799 CCTCTCCGGGCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCAT
1 CCTCTCCGGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
*
29453864 TCCATCTCTAAGCA
66 TCCATGTCTAAGCA
29453878 TACGGAGTTC
Statistics
Matches: 192, Mismatches: 36, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
157 7 0.04
158 91 0.47
159 90 0.47
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CCTCTCCGGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCACCAGCCGGACCAAGGGTAGCAGCAGCAGGACCGACAGCACCTAGAGGGGGA
TCGAGCCGATCCCCGACTTGCGCATTATA
Found at i:29454199 original size:26 final size:26
Alignment explanation
Indices: 29454149--29454201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29454139 GTTGACTTAG
*
29454149 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
29454175 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
29454201 G
1 G
29454202 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:29454526 original size:26 final size:26
Alignment explanation
Indices: 29454490--29454541 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29454480 GTTGGTTTAG
29454490 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
* *
29454516 GCATATGGAGTTCCTTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
29454542 CAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:29455240 original size:26 final size:26
Alignment explanation
Indices: 29455210--29455262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29455200 GTTGACATAG
29455210 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29455236 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29455262 G
1 G
29455263 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29455542 original size:158 final size:158
Alignment explanation
Indices: 29455233--29455578 Score: 385
Period size: 158 Copynumber: 2.2 Consensus size: 158
29455223 ATCCCCAGTC
** * * * *
29455233 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTACGATAGTAGGATCG
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAAGGTTACGACAGCAAGATCG
* ** *
29455298 ACAGCACGTAGGGGGGACCGGATGGATCCCCGACTTGCGTATTCTGCCTCTCCGGCTGGCTGAAC
66 ACAGCACGTAGGGGGGACCGGATCGATCCCCGACTTGCACATTCTGCCTCTCCGGCTAGCTGAAC
* *
29455363 GCCCGTACACCCGTTTTGTGGGTTGACT
131 GCCCATACACCCGTTTCGTGGGTTGACT
* * *
29455391 TAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCGACAGCAAGATC
1 TAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGATCGGACAGAAGGTTACGACAGCAAGATC
* * * * * *
29455455 GACAGCACGTAGGGGGGATCGGGTCGAGT-CCTGGCTTGCACATTTTGTCTCTCCGG-TCAGCTG
65 GACAGCACGTAGGGGGGACCGGATCGA-TCCCCGACTTGCACATTCTGCCTCTCCGGCT-AGCTG
** * ** *
29455518 AGTGCCCATACGCTTGTTTCGTGGGTTGGCT
128 AACGCCCATACACCCGTTTCGTGGGTTGACT
29455549 TAAGCATACAGAGTTCATT-CCATGTCTAAG
1 TAAGCATACAGAGTTCATTCCCA-GTCTAAG
29455579 CATACGGAGT
Statistics
Matches: 156, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 5 0.03
158 149 0.96
159 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (158 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAAGGTTACGACAGCAAGATCG
ACAGCACGTAGGGGGGACCGGATCGATCCCCGACTTGCACATTCTGCCTCTCCGGCTAGCTGAAC
GCCCATACACCCGTTTCGTGGGTTGACT
Found at i:29456480 original size:26 final size:26
Alignment explanation
Indices: 29456430--29456482 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29456420 GTTGGCTTAG
*
29456430 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
29456456 GCATGCGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
29456482 G
1 G
29456483 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:29457418 original size:26 final size:26
Alignment explanation
Indices: 29457388--29457440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29457378 GTTGACTTAG
29457388 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
29457414 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29457440 G
1 G
29457441 ATTGGTTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29458314 original size:26 final size:26
Alignment explanation
Indices: 29458285--29458337 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29458275 GTTGATTTAG
29458285 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
**
29458311 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29458337 G
1 G
29458338 ATCGGACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:29459106 original size:170 final size:171
Alignment explanation
Indices: 29458707--29459131 Score: 441
Period size: 171 Copynumber: 2.5 Consensus size: 171
29458697 CCTGGCTTGC
* * * * *
29458707 CATTCTGCCTCTTTGACCAGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTTCGACCGGCTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * * * *
29458772 AGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGTAGGACCAGTAGCAGGATC
66 AGTTCAGTCCCAGTCTAAGACCAGACCGAACTAAGGGTTACGGCAGCAGGACCAGCAGCAGGATC
* * * *
29458837 GGTAGCATACAGGAGGGGATCGGGCTGATCCTCGGTTTACG
131 GGCAGCATACAGGAGGGGATCAGGCTGATCCCCGGCTTACG
** * * *
29458878 CATTCTGCCTC-TCTGATTGACTGAACGCCTGTACGCTCGTTTCATTGGTTGGCTTAGGCATACG
1 CATTCTGCCTCTTC-GACCGGCTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* ** ** *
29458942 GAGTTCAGT-CCATGTCTAAGCCCTAG-CCAGAA-TAAGGGTTGTGGCAGCAGGACTGGCAGCGG
65 GAGTTCAGTCCCA-GTCTAAGACC-AGACC-GAACTAAGGGTTACGGCAGCAGGACCAGCAGCAG
* * **
29459004 GATCGGCAGCATGCA-GTGGGGA-CTAGGCTGATCCCCGGCTTGGG
127 GATCGGCAGCATACAGGAGGGGATC-AGGCTGATCCCCGGCTTACG
* * * *
29459048 CATTCTGCCTCTTCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGT
1 CATTCTGCCTCTTCGACCGGCTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
29459113 AGTTCA-TCCCCAGTCTAAG
66 AGTTCAGT-CCCAGTCTAAG
29459132 CATACGGAGT
Statistics
Matches: 207, Mismatches: 39, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
169 2 0.01
170 91 0.44
171 109 0.53
172 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (171 bp):
CATTCTGCCTCTTCGACCGGCTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
AGTTCAGTCCCAGTCTAAGACCAGACCGAACTAAGGGTTACGGCAGCAGGACCAGCAGCAGGATC
GGCAGCATACAGGAGGGGATCAGGCTGATCCCCGGCTTACG
Found at i:29459135 original size:26 final size:26
Alignment explanation
Indices: 29459105--29459157 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29459095 GTTGACTTAG
*
29459105 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29459131 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29459157 G
1 G
29459158 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29459447 original size:159 final size:159
Alignment explanation
Indices: 29459284--29459633 Score: 364
Period size: 159 Copynumber: 2.2 Consensus size: 159
29459274 CATGGGTTGG
* * * *
29459284 CTTAGGCATAGGGAGTTCATTCCATGTCTAAG-TCCTAGTCAGACAGGGGGTTGTGGCAGCGGCA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGAT-CGAATCAGACAGAGGGTTGTGGCAGCGGCA
* ** * *
29459348 TCGGCAGCATGCAGAGGG-GGATCGAGCCGATCCCAAGCTTACATATTATGCCTCTCCGGCCGGC
65 TCGACAGCACACAG-GGGAGGATCGAGCCGATCCCAAGCTTACACATTATGCCTCTCCGACCGGC
*
29459412 TCAGCGCCTAAACACTCATTTCATGAGTTAA
129 TCAGCACCTAAACACTCATTTCATGAGTTAA
* * * * *
29459443 CTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGAATTAGACCGAGGGTTGTGGTAGCGGGA
1 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGAATCAGACAGAGGGTTGTGGCAGCGGCA
* * * ** * * * *
29459507 TCGATAGCACACAGGGGAGGATCGGGCCGGTCCCCGGGTTGCACATTTTGCCTTTCCGACCGGCT
65 TCGACAGCACACAGGGGAGGATCGAGCCGATCCCAAGCTTACACATTATGCCTCTCCGACCGGCT
* ** * * * **
29459572 TAGCACCTGTACGCTCGTTTCATGGGTTGG
130 CAGCACCTAAACACTCATTTCATGAGTTAA
29459602 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
29459634 CATACGAAGT
Statistics
Matches: 154, Mismatches: 33, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 6 0.04
159 144 0.94
160 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAATCAGACAGAGGGTTGTGGCAGCGGCAT
CGACAGCACACAGGGGAGGATCGAGCCGATCCCAAGCTTACACATTATGCCTCTCCGACCGGCTC
AGCACCTAAACACTCATTTCATGAGTTAA
Found at i:29459657 original size:26 final size:26
Alignment explanation
Indices: 29459607--29459659 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29459597 GTTGGCTTAG
* *
29459607 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
29459633 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
29459659 G
1 G
29459660 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Done.