Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 315 of 402
Found at i:29459832 original size:26 final size:25
Alignment explanation
Indices: 29459803--29459858 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
29459793 GTTGACTTAG
* *
29459803 GCATACGAAGTTTATCCCCAGTCTAA
1 GCAT-CGAAGTTCATCCCCAATCTAA
* *
29459829 GCATCGGAGTTCATTCCCAATCTAA
1 GCATCGAAGTTCATCCCCAATCTAA
29459854 G-ATCG
1 GCATCG
29459859 GATCAGACTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATCGAAGTTCATCCCCAATCTAA
Found at i:29459839 original size:25 final size:24
Alignment explanation
Indices: 29459811--29459860 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
29459801 AGGCATACGA
* *
29459811 AGTTTATCCCCAGTCTAAGCATCGG
1 AGTTCATCCCCAATCTAAG-ATCGG
*
29459836 AGTTCATTCCCAATCTAAGATCGG
1 AGTTCATCCCCAATCTAAGATCGG
29459860 A
1 A
29459861 TCAGACTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (24 bp):
AGTTCATCCCCAATCTAAGATCGG
Found at i:29460038 original size:26 final size:26
Alignment explanation
Indices: 29459986--29460038 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29459976 GTTGGCTTAG
*
29459986 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTATAA
* *
29460012 GCATACGGAGTTTATTCC-TAGTATAA
1 GCATACGAAGTTCATTCCAT-GTATAA
29460038 G
1 G
29460039 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTATAA
Found at i:29460238 original size:197 final size:185
Alignment explanation
Indices: 29459580--29460390 Score: 681
Period size: 197 Copynumber: 4.3 Consensus size: 185
29459570 CTTAGCACCT
* * *
29459580 GTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
1 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTT
* * *
29459645 CATTCCCAATCTAAGATCAGATCAGA-TCGAGGGCTACGGTAGTACGACCAGCAATAGGATCGAC
66 CATTCCCAATATAAGATCAGACCAGACT-GAGGG-T----T-GT--G----GCAACAGGATCGAC
* ** * * * * * * * *
29459709 AGCATG-CGGGGGGGATC-AGGTCGTTCCTCGACTTGCGCATTCTGCTTCTCCGATGGACTGAGT
118 AGCACGTAAGGGGGGATCGAGCT-GATCCTCGGCTTACGCATTCTGCCTCTCCGATCGATTGAGC
29459772 GCCC
182 GCCC
* * * * * * *
29459776 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTTATCCCCA-GTCTAAGCAT-CGGAGT
1 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGCATACGGAGT
* * * * * * * *
29459839 TCATTCCCAATCTAAGATCGGATCAGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCAA-GG
65 TCATTCCCAATATAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCGACAGCACGTAAGGG
* * ** * * *
29459903 GGGATC-AACTTGATCCTTGGCTTACGTTTTCTGCCTCTCCGACCGGTTGAGCACCC
130 GGGATCGAGC-TGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGATTGAGCGCCC
* * *
29459959 GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTT
1 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTT
* * * *
29460024 TATTCCTAGTATAAGATCAGACCAGA-TCGAGGGTTACGATAATAGGACCAGTAACAGGGTCGAC
66 CATTCCCAATATAAGATCAGACCAGACT-GAGGGTT--G----T-GG--C---AACAGGATCGAC
* * *
29460088 AGCACGTAAGGGGGGATCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCCAATCGACTGAGCG
118 AGCACGTAAGGGGGGATCGAGCTGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGATTGAGCG
29460153 CCC
183 CCC
* * * * *
29460156 ATACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATCTCTA-GTCTAAGCTTACGGAGT
1 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGCATACGGAGT
* * * * *
29460220 TCATTCCCAATCTAAGATCGGACTAGACTGAGGGTTGTGGCAACAGGATCGATAGCATGT-AGGG
65 TCATTCCCAATATAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCGACAGCACGTAAGGG
* * * *
29460284 GGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTCTGGTC-AGTTGAGCGCCC
130 GGGATCGAGCTGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGA-TTGAGCGCCC
* *
29460340 GTACGCCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
1 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT
29460391 CAGCCCTAGT
Statistics
Matches: 504, Mismatches: 86, Indels: 62
0.77 0.13 0.10
Matches are distributed among these distances:
182 3 0.01
183 110 0.22
184 127 0.25
185 16 0.03
186 1 0.00
187 1 0.00
188 1 0.00
189 1 0.00
190 3 0.01
191 3 0.01
194 1 0.00
195 37 0.07
196 66 0.13
197 128 0.25
198 6 0.01
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (185 bp):
GTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCCAATATAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCGACAGCACGTAAGGGG
GGATCGAGCTGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGATTGAGCGCCC
Found at i:29460351 original size:381 final size:378
Alignment explanation
Indices: 29459455--29460390 Score: 1113
Period size: 379 Copynumber: 2.5 Consensus size: 378
29459445 TAGGCATACA
* * * * *
29459455 GAGTTCATTCCCAGTCTAAGATCGAATTAGACCGAGGGTTGTGGTAGCGGGATCGATAGCACACA
1 GAGTTCATTCCCAATCTAAGATCGGA-TAGACTGAGGGTTGTGGTAGCAGGATCGATAGCACGCA
* * * * * * * * *
29459520 GGGGAGGATCGGGCCGGTCCCCGGGTTGCACATTTTGCCTTTCCGACCGGCTT-AGCACCTGTAC
65 GGGG-GGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACCGG-TTGAGCACCCGTAC
*
29459584 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
128 GCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
* * * * * *
29459649 CCCAATCTAAGATCAGATCAGATCGAGGGCTACGGTAGTACGACCAGCAATAGGATCGACAGCAT
193 CCCAATATAAGATCAGACCAGATCGAGGGCTACGATAATACGACCAGCAACAGGATCGACAGCAC
** * * * * * * * * *
29459714 GCGGGGGGGATCAGGTCGTTCCTCGACTTGCGCATTCTGCTTCTCCGATGGACTGAGTGCCCGCA
258 GAAGGGGGGATCAGCTCGATCCCCGACTTACGCATTCTGCCTCTCCAATCGACTGAGCGCCCACA
* *
29459779 CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTTATCCCCAGTCTAAGCATCG
323 CGCTCGTTTCATGGGTTGACTTAGGCATAAGAAGTTCATCCCCAGTCTAAGCATCG
* * *
29459835 GAGTTCATTCCCAATCTAAGATCGGATCAGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCGGAT-AGACTGAGGGTTGTGGTAGCAGGATCGATAGCACGCA
* * * * ** * *
29459900 AGGGGGATC-AACTTGATCCTTGGCTTACGTTTTCTGCCTCTCCGACCGGTTGAGCACCCGCACG
65 GGGGGGATCGAGC-CGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGTTGAGCACCCGTACG
* * *
29459964 CCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTTATTC
129 CCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
* * * * * *
29460029 CTAGTATAAGATCAGACCAGATCGAGGGTTACGATAATAGGACCAGTAACAGGGTCGACAGCACG
194 CCAATATAAGATCAGACCAGATCGAGGGCTACGATAATACGACCAGCAACAGGATCGACAGCACG
* *
29460094 TAAGGGGGGATCGAGCT-GATCCCCGGCTTACGCATTCTGCCTCTCCAATCGACTGAGCGCCCAT
259 -AAGGGGGGATC-AGCTCGATCCCCGACTTACGCATTCTGCCTCTCCAATCGACTGAGCGCCCAC
* * * * * *
29460158 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATCTCTAGTCTAAGCTTACG
322 ACGCTCGTTTCATGGGTTGACTTAGGCATAAGAAGTTCATCCCCAGTCTAAGCAT-CG
* * * *
29460216 GAGTTCATTCCCAATCTAAGATCGGACTAGACTGAGGGTTGTGGCAACAGGATCGATAGCATGTA
1 GAGTTCATTCCCAATCTAAGATCGGA-TAGACTGAGGGTTGTGGTAGCAGGATCGATAGCACGCA
* ** * *
29460281 GGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTCTGGTCAGTTGAGCGCCCGTACGC
65 GGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGTTGAGCACCCGTACGC
* *
29460346 CCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
130 CCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
29460391 CAGCCCTAGT
Statistics
Matches: 464, Mismatches: 84, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
378 3 0.01
379 155 0.33
380 151 0.33
381 152 0.33
382 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (378 bp):
GAGTTCATTCCCAATCTAAGATCGGATAGACTGAGGGTTGTGGTAGCAGGATCGATAGCACGCAG
GGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGTTGAGCACCCGTACGCC
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCC
AATATAAGATCAGACCAGATCGAGGGCTACGATAATACGACCAGCAACAGGATCGACAGCACGAA
GGGGGGATCAGCTCGATCCCCGACTTACGCATTCTGCCTCTCCAATCGACTGAGCGCCCACACGC
TCGTTTCATGGGTTGACTTAGGCATAAGAAGTTCATCCCCAGTCTAAGCATCG
Found at i:29461783 original size:26 final size:26
Alignment explanation
Indices: 29461747--29461799 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29461737 GTTGGCTTAG
29461747 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
29461773 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
29461799 G
1 G
29461800 ATTGGGCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:29461977 original size:26 final size:26
Alignment explanation
Indices: 29461948--29462000 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29461938 GTTGGCTTAG
29461948 GCATACGGAGTTCA-TCCTTAGTCTAA
1 GCATACGGAGTTCATTCC-TAGTCTAA
29461974 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
29462000 G
1 G
29462001 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:29462485 original size:26 final size:26
Alignment explanation
Indices: 29462455--29462507 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29462445 GTTGGCTTAG
*
29462455 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
29462481 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
29462507 G
1 G
29462508 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:29462680 original size:26 final size:26
Alignment explanation
Indices: 29462651--29462703 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29462641 GTTGGCTTAG
29462651 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
* *
29462677 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
29462703 G
1 G
29462704 ATCAGACTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:29462702 original size:196 final size:194
Alignment explanation
Indices: 29462361--29462873 Score: 618
Period size: 196 Copynumber: 2.6 Consensus size: 194
29462351 TAAAATTGAT
* * * * *
29462361 AGCATGCAGGGGGGATCGGGTCGATCCCCAGCATGCGCATTCTGCCTCTCCGATCGACTGAGCGC
1 AGCATGCAGGGGGGATCGGGCCGAT-CCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGC
* **
29462426 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
65 CCGCACACT-GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
*
29462491 TTCATTCCAAGTCTAAGATCAGAC-CGGACCGAGGGTTGCGATAGCAAGACCAGCAGCAGGATCG
129 TTCATTCCAAGTCTAAGATCAGACTCGG-CCGAGGGTTGCGATAACAAGACCAGCAGCAGGATCG
29462555 AC
193 AC
29462557 AGCATGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGC
1 AGCATGCAGGGGGGATCGGGCCGATCCC-GGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGC
* * *
29462622 TCGCACACTAGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATATGGAG
65 CCGCACACT-GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* * * * * * * *
29462687 TTCATTCCTAGTCTAAGATCAGACTTGGTCGAGGGTTGTGGTAACAGGACCAGCAGCAGGATTGG
129 TTCATTCCAAGTCTAAGATCAGACTCGGCCGAGGGTTGCGATAACAAGACCAGCAGCAGGATCGA
*
29462752 T
194 C
** ** * * ** * * * *
29462753 AGCACACAGGGGGGATCGAACCGATCCCGACTTCCATATTCTACCTTTTCGG-CCAGCTGAGCGC
1 AGCATGCAGGGGGGATCGGGCCGATCCCGGCTTACGCATTCTGCCTCTCCGGTCGA-CTGAGCGC
* *
29462817 CCGCACACTCTTTTCGTGGGTTGGTTTAGTG-ATACGGAGTTCATTCCATGTCTAAGC
65 CCGCACACTGTTTT-GTGGGTTGGCTTAG-GCATACGGAGTTCATTCCATGTCTAAGC
29462874 CACAACCGGA
Statistics
Matches: 274, Mismatches: 38, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
194 6 0.02
195 74 0.27
196 192 0.70
197 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (194 bp):
AGCATGCAGGGGGGATCGGGCCGATCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCC
CGCACACTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCAAGTCTAAGATCAGACTCGGCCGAGGGTTGCGATAACAAGACCAGCAGCAGGATCGAC
Found at i:29462945 original size:708 final size:702
Alignment explanation
Indices: 29461555--29462908 Score: 1465
Period size: 708 Copynumber: 1.9 Consensus size: 702
29461545 CGGTCGGTTC
* * * *
29461555 AGCGCTCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACCGATTTCATTCCCAGTCTAAGATCG
1 AGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACCGACTTCATTCCCAGTCTAAGATCG
** ** * * *
29461620 AATCGAACCAAGGGTTGCTGTAGTAGGATCGACAGCACGCAGGGGGGATCATGTCGGTCCCCGGC
66 AATAAAACCAAGGGTTGCTGTAGTAAAATCGACAGCACGCAGGGGGGATCAGGTCGATCCCCAGC
* * * *
29461685 TTGCCCATTCTCCCTCTCCGGCCTGCTGAGCGCCTGCACGAACATTTCGTGGGTTGGCTTAGGCA
131 ATGCCCATTCTCCCTCTCCGACCTGCTGAGCGCCCGCACGAACATTTCATGGGTTGGCTTAGGCA
* ** *
29461750 TACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCATGTCTAAGATTGGGCCGGACCGA
196 TACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGA
* * *
29461815 GGGTTGCGACAGCAGGACCAGCAGCAAGATCAATAGCACGCAGGGGTGGATCGGGCCAATTCTCG
261 GGGTTGCGACAGCAAGACCAGCAGCAAGATCAACAGCACGCAGGGGTGGATCGGGCCAATCCTCG
* ** *
29461880 GCTTGCACATTCTGCCTCTCCGACTGACTGACCGACCACTCGCATGCTTGTTTCGTGGGTTGGCT
326 GCTTACACATTCTGCCTCTCCGACTGACTGA-CGA-CACTCGCACACTAGTTTCGTGGGTTGGCT
* * *
29461945 TAGGCATACGGAGTTCATCCTTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCA
389 TAGGCATACGAAGTTCATCCATAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCA
** **** ***
29462010 GACTGACGATTGCGACAACAGGATCAATAGCATGCAGGGGGGATCGGGTTGATCCTCATCTTGGG
454 GACTGACGATTGCGACAACAGGATCAATAGCACACAGGGGGGATCGAACCGATCCTCATCTTCCA
* * * * * * *
29462075 CATTCTGCCTCTCCGATCGGTTGAGCGCCCGTACGCCCGTTTCATGTGTTGGCTTAGGCATAGCA
519 CATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGCA
* * * * * * * *
29462140 AGTTCATCCCATGTTTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGAGGGTTGGCTT
584 AGTTCATCCCATGTCTAAGCCACAACCGGACCAAGGGTTGTGACAGCAGGACCGAGGG-TAGCAT
* * * *
29462205 AGGCATAATGAGTTCATCCCGTTCCCCGACTTGCGCATTATGCCTCTCCGATTGGCTT
648 AGACAGAATGAG-TAATCCCGAT--CCGACTTGCGCATTATGCCTCTCCGATTGGCTT
*
29462263 AGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCG
1 AGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACCGACTTCATTCCCAGTCTAAGATCG
* * * * * * *
29462328 GATAAAATCGAGGGTTGC-GATAGTAAAATTGATAGCATGCAGGGGGGATCGGGTCGATCCCCAG
66 AATAAAACCAAGGGTTGCTG-TAGTAAAATCGACAGCACGCAGGGGGGATCAGGTCGATCCCCAG
* * * ** *
29462392 CATGCGCATTCTGCCTCTCCGATC-GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
130 CATGCCCATTCTCCCTCTCCGACCTG-CTGAGCGCCCGCACGAACATTTCATGGGTTGGCTTAGG
*
29462456 CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACC
194 CATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACC
* * * * *
29462521 GAGGGTTGCGATAGCAAGACCAGCAGCAGGATCGACAGCATGCAGGGG-GGATCGGGCCGATCC-
259 GAGGGTTGCGACAGCAAGACCAGCAGCAAGATCAACAGCACGCAGGGGTGGATCGGGCCAATCCT
* * * *
29462584 CTGGCTTACGCATTCTGCCTCTCCG-GTCGACTGA-G-CGCTCGCACACTAGTTTTGTGGGTTGG
324 C-GGCTTACACATTCTGCCTCTCCGACT-GACTGACGACACTCGCACACTAGTTTCGTGGGTTGG
*
29462646 CTTAGGCATACGAAGTTCATTCCAT-GTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGA
387 CTTAGGCATACGAAGTTCA-TCCATAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
** * * * ***
29462710 CTTGGTC-GAGGGTTGTGGTAACAGGACCAGCAGCAGGATTGGTAGCACACAGGGGGGATCGAAC
451 -TCAGACTGA-CGAT-T-G---C--GA-CA--A-CAGGATCAATAGCACACAGGGGGGATCGAAC
* * * * * * *
29462774 CGATCC-CGA-CTTCCATATTCTACCTTTTCGGCCAGCTGAGCGCCCGCACACTCTTTTCGTGGG
503 CGATCCTC-ATCTTCCACATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACCCGTTTCATGGG
* * * *
29462837 TTGGTTTAGTG-ATA-CGGAGTTCATTCCATGTCTAAGCCACAACCGGACCAAGGGTTGTGATAG
567 TTGGCTTAG-GCATAGC-AAGTTCATCCCATGTCTAAGCCACAACCGGACCAAGGGTTGTGACAG
29462900 CAGGACCGA
630 CAGGACCGA
29462909 CAGGGAGATC
Statistics
Matches: 530, Mismatches: 95, Indels: 36
0.80 0.14 0.05
Matches are distributed among these distances:
703 79 0.15
704 9 0.02
705 2 0.00
706 3 0.01
707 42 0.08
708 262 0.49
709 1 0.00
711 2 0.00
712 2 0.00
713 1 0.00
714 97 0.18
715 30 0.06
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (702 bp):
AGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACCGACTTCATTCCCAGTCTAAGATCG
AATAAAACCAAGGGTTGCTGTAGTAAAATCGACAGCACGCAGGGGGGATCAGGTCGATCCCCAGC
ATGCCCATTCTCCCTCTCCGACCTGCTGAGCGCCCGCACGAACATTTCATGGGTTGGCTTAGGCA
TACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGA
GGGTTGCGACAGCAAGACCAGCAGCAAGATCAACAGCACGCAGGGGTGGATCGGGCCAATCCTCG
GCTTACACATTCTGCCTCTCCGACTGACTGACGACACTCGCACACTAGTTTCGTGGGTTGGCTTA
GGCATACGAAGTTCATCCATAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGA
CTGACGATTGCGACAACAGGATCAATAGCACACAGGGGGGATCGAACCGATCCTCATCTTCCACA
TTCTACCTCTCCGACCAGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGCAAG
TTCATCCCATGTCTAAGCCACAACCGGACCAAGGGTTGTGACAGCAGGACCGAGGGTAGCATAGA
CAGAATGAGTAATCCCGATCCGACTTGCGCATTATGCCTCTCCGATTGGCTT
Found at i:29463448 original size:158 final size:158
Alignment explanation
Indices: 29463058--29463453 Score: 397
Period size: 158 Copynumber: 2.5 Consensus size: 158
29463048 CAATCTAAGT
* * * ** *
29463058 ATACAGAGTTCATTCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGTAGGATCGGTAGCA
1 ATACGGAGTTCATTCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGATCGACAACA
* * * * * *
29463123 CGTAGGGGGGA-CAGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGGCTAAGCACCCC
66 CGAAGGGGGGACCAGAGCCGATCCCCGACCTACGCATTATGCATCTCCAACCGGCTAAGCACCCC
* * ** * *
29463187 TACGCCCGTTTTGTGGGTTGGCTTAGGG
131 AACGCCCATTTCATGGGTTGACTTAGGC
* * * **
29463215 ATAGGGAGTTCATTCCATGTCTAAG-CCTAG-CCAGATCGAGGGTTGTGGCAGCGGGATCGACAA
1 ATACGGAGTTCATTCCA-GTCTAAGATC-AGACCAGATCGAGGGTTGCGGCAGTAGGATCGACAA
* * *
29463278 CACGCAGAGGGGGACCAG-GCCGATCCCCGACCTACGTATTATGCATCTCCGACCGGCTCAA-CA
64 CACGAAG-GGGGGACCAGAGCCGATCCCCGACCTACGCATTATGCATCTCCAACCGGCT-AAGCA
* * *
29463341 CGCGAACGCTCATTTCATGGGTTGACTTAGGC
127 CCCCAACGCCCATTTCATGGGTTGACTTAGGC
* ** *
29463373 ATACGGAGTGCATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTGCAACATTAGGATCGACAAC
1 ATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGATCGACAAC
**
29463438 ATAAAGGGGGGACCAG
65 ACGAAGGGGGGACCAG
29463454 TTTGGTCCCC
Statistics
Matches: 191, Mismatches: 40, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 48 0.25
158 104 0.54
159 39 0.20
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.21
Consensus pattern (158 bp):
ATACGGAGTTCATTCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGATCGACAACA
CGAAGGGGGGACCAGAGCCGATCCCCGACCTACGCATTATGCATCTCCAACCGGCTAAGCACCCC
AACGCCCATTTCATGGGTTGACTTAGGC
Found at i:29463567 original size:26 final size:26
Alignment explanation
Indices: 29463536--29463607 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
29463526 TAGGCTTACG
29463536 GAGTTCATTCCATGTCTAAGCATACA
1 GAGTTCATTCCATGTCTAAGCATACA
* *
29463562 GAGTTCATTCCATGTCTAAACATACG
1 GAGTTCATTCCATGTCTAAGCATACA
29463588 GAGTTCATTCCCA-GTCTAAG
1 GAGTTCATT-CCATGTCTAAG
29463608 ATTGGATCGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
26 39 0.93
27 3 0.07
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCATGTCTAAGCATACA
Found at i:29463789 original size:26 final size:26
Alignment explanation
Indices: 29463752--29463804 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29463742 GCTGACTTAG
*
29463752 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGAAGTTCATT-CCCAGTCTAA
*
29463778 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29463804 G
1 G
29463805 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:29464133 original size:26 final size:26
Alignment explanation
Indices: 29464097--29464146 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29464087 GGCTTAGGCG
29464097 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
29464123 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
29464147 AGTTTATGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:29464853 original size:26 final size:26
Alignment explanation
Indices: 29464824--29464876 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29464814 GTTGACTTAG
**
29464824 GCATATGGAGTTCATTTTCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
29464850 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
29464876 G
1 G
29464877 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:29465192 original size:158 final size:158
Alignment explanation
Indices: 29464850--29465183 Score: 445
Period size: 158 Copynumber: 2.1 Consensus size: 158
29464840 TTCAGTCTAA
* * ** *
29464850 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCGGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
29464915 GCACGTAGAGGGGAACGGGCCGATCTCCGGCTTATGCATTCTGCCTCTTCGGTCAGCTGAGCGCC
66 GCAAGTAGAGGGGAACGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCAGCTGAGCACC
*
29464980 CGTACACCCATTTTGTGGGTTGGCTTAG
131 CGTACACCCATTTCGTGGGTTGGCTTAG
* * * *
29465008 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
29465073 GCAAGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GACTGAGCAC
66 GCAAGTAGAGGGGAACGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCAG-CTGAGCAC
* *
29465137 CCGTACACTCGTTTCGTGGGTTGGCTTAG
130 CCGTACACCCATTTCGTGGGTTGGCTTAG
29465166 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
29465184 ATGCCTAAGC
Statistics
Matches: 151, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
157 1 0.01
158 150 0.99
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
GCAAGTAGAGGGGAACGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCAGCTGAGCACC
CGTACACCCATTTCGTGGGTTGGCTTAG
Found at i:29465202 original size:26 final size:26
Alignment explanation
Indices: 29465166--29465235 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
29465156 GTTGGCTTAG
29465166 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
29465192 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
29465218 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
29465236 CAATCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:29465377 original size:210 final size:210
Alignment explanation
Indices: 29465015--29465392 Score: 479
Period size: 210 Copynumber: 1.8 Consensus size: 210
29465005 TAGGCATACA
* * * * *
29465015 GAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGACAGTAGGATCGACAGCAAGTA
1 GAGTTCATTCCCAATCTAAGATAGGACCAAACCGAGGGTTGCAACAGTAGGATCGACAGCAAGCA
* * * * * *
29465080 GGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGTACAC
66 GGGGGGACCGGGCTAATCCCCGACTTACACATTCTACCTCTCCGACCGACTGAGCACCCGCACAC
* * *
29465145 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCC
131 TCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCC
29465210 ATGCCTAAGCATATG
196 ATGCCTAAGCATATG
* * * *
29465225 GAGTTCATTCCCAATCTAAGATAGGACCAGACCGAGGGTTGCAACAGTAGGATTGGCAGCACGCA
1 GAGTTCATTCCCAATCTAAGATAGGACCAAACCGAGGGTTGCAACAGTAGGATCGACAGCAAGCA
* * ** ** ** **
29465290 GGGGGGATCGAG-TCAATCCCCGGTTTACACATTCTACCTCTCCGACCGGTTGAGGGCCCGCATG
66 GGGGGGACCGGGCT-AATCCCCGACTTACACATTCTACCTCTCCGACCGACTGAGCACCCGCACA
*
29465354 CTCATTTCATGGGTTGGCTTAGGCATACGAAGTTTATTC
130 CTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTC
29465393 TGTGTCTAAG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
209 1 0.01
210 137 0.99
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (210 bp):
GAGTTCATTCCCAATCTAAGATAGGACCAAACCGAGGGTTGCAACAGTAGGATCGACAGCAAGCA
GGGGGGACCGGGCTAATCCCCGACTTACACATTCTACCTCTCCGACCGACTGAGCACCCGCACAC
TCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCC
ATGCCTAAGCATATG
Found at i:29465595 original size:26 final size:25
Alignment explanation
Indices: 29465560--29465617 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 25
29465550 GTTGACTTAG
29465560 GCATCGGAGTTCATCCCCAGTCTAA
1 GCATCGGAGTTCATCCCCAGTCTAA
*
29465585 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATCCCCAGTCTAA
29465611 G-ATCGGA
1 GCATCGGA
29465618 TCGGACTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
24 4 0.13
25 6 0.19
26 21 0.68
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAGTCTAA
Found at i:29465947 original size:159 final size:158
Alignment explanation
Indices: 29465585--29465960 Score: 382
Period size: 159 Copynumber: 2.4 Consensus size: 158
29465575 CCCAGTCTAA
* * *
29465585 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGACCGGCA
* * * *
29465650 ACACGCAAGGGGGACTGGGCCGATCCCCTACTTGCGCACTCTGCCTCTCTGGTCGACTGAGCGCC
66 ACACGCAAGGGGGACTGGGCCGATCCCCGACTTGCGCACTATGCCTCTCTGGTCGACTCAGCCCC
* * * *
29465715 CGCACTCCCGTTTCGTGGGTTGGCTTAG
131 CGAACGCCCGTTTCGTGGGTTGACATAG
* * * * * ** * * * *
29465743 GCATAGGGAGCTCATTGCAAGTCTAAG-CCCTAGCCAGG-CCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TC-GGACCGAGGGTTGCGACAGCAGGACCGG
* * * * * *
29465806 TAGCACGTAGAGGGGGACCT-GGCCGGTCCCCGACTTGTGCATTATGCCTCTCTGG-CTGACTCA
64 CAACACGCA-AGGGGGA-CTGGGCCGATCCCCGACTTGCGCACTATGCCTCTCTGGTC-GACTCA
*
29465869 GCCCCCGAACGCTCGTTTCGTGGGTTGACATAG
126 GCCCCCGAACGCCCGTTTCGTGGGTTGACATAG
* * * *
29465902 GCATATGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGTAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGA
29465961 TTGACAGCAC
Statistics
Matches: 169, Mismatches: 42, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 52 0.31
159 111 0.66
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGACCGGCA
ACACGCAAGGGGGACTGGGCCGATCCCCGACTTGCGCACTATGCCTCTCTGGTCGACTCAGCCCC
CGAACGCCCGTTTCGTGGGTTGACATAG
Found at i:29465970 original size:159 final size:158
Alignment explanation
Indices: 29465585--29466086 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 158
29465575 CCCAGTCTAA
* * *
29465585 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * * *
29465650 ACACGCA-AGGGGGACTGGGCCGATCCCCTACTTGCGCACTCTGCCTCTCTGG-TCGACTGAGCG
66 GCACGCAGAGGGGGACT-GGCCGGTCCCCGACTTGTGCATTCTGCCTCTCTGGCT-GACTGAGCG
* * *
29465713 CCCGCACTCCCGTTTCGTGGGTTGGCTTAG
129 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * ** * * * * *
29465743 GCATAGGGAGCTCATTGCAAGTCTAAG-CCCTAGCCAGG-CCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGGA-TC-GGACCGAGGGTTGCGACAGCAGGATCGG
* * * *
29465806 TAGCACGTAGAGGGGGACCTGGCCGGTCCCCGACTTGTGCATTATGCCTCTCTGGCTGACTCAGC
64 CAGCACGCAGAGGGGGA-CTGGCCGGTCCCCGACTTGTGCATTCTGCCTCTCTGGCTGACTGAGC
* * *
29465871 CCCCGAACGCTCGTTTCGTGGGTTGACATAG
128 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
29465902 GCATATGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGTAGGATTGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * * * * *
29465967 GCACGCAG-GGGGGA-TCGAGACGGTCCTCGACTTGTGCATTCTACCTCTCCGACTGGCTGAGTG
66 GCACGCAGAGGGGGACT-G-GCCGGTCCCCGACTTGTGCATTCTGCCTCTCTGGCTGACTGAGCG
* * * *
29466030 CCTGTACGCTCATTTCATGGGTTGGCTTAG
129 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
29466060 GCATACGGAGTTCA-TTCCATGTCTAAG
1 GCATACGGAGTTCATTTCCA-GTCTAAG
29466087 CATACAGAGT
Statistics
Matches: 270, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 136 0.50
159 120 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGAGGGGGACTGGCCGGTCCCCGACTTGTGCATTCTGCCTCTCTGGCTGACTGAGCGCC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29466090 original size:26 final size:26
Alignment explanation
Indices: 29466060--29466112 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29466050 GTTGGCTTAG
*
29466060 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29466086 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29466112 G
1 G
29466113 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29466428 original size:158 final size:158
Alignment explanation
Indices: 29466086--29466419 Score: 438
Period size: 158 Copynumber: 2.1 Consensus size: 158
29466076 CCATGTCTAA
* ** *
29466086 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCGGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
29466151 GCACGTAGAGGGGAACGGGCCGATCTCCGGCTTATGCATTCTGCCTCTTCGGTCAGCTGAGCGCC
66 GCAAGTAGAGGGGAACGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCACC
*
29466216 CGTACACCCATTTTGTGGGTTGGCTTAG
131 CGTACACCCATTTCGTGGGTTGGCTTAG
* * *
29466244 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
29466309 GCAAGTAGGGGGGACCGGGCTGATCCCCGAG-TTGCGCATTCTGCCTCTCCGATC-GACTGTGCA
66 GCAAGTAGAGGGGAACGGGCCGATCCCCG-GCTTACGCATTCTGCCTCTCCGATCAG-CTGAGCA
* *
29466372 CCCGTACACTCGTTTCGTGGGTTGGCTTAG
129 CCCGTACACCCATTTCGTGGGTTGGCTTAG
*
29466402 GCATACGGAGTTCATTCC
1 GCATACAGAGTTCATTCC
29466420 ATGCCTAAGC
Statistics
Matches: 152, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
157 1 0.01
158 150 0.99
159 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
GCAAGTAGAGGGGAACGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCACC
CGTACACCCATTTCGTGGGTTGGCTTAG
Found at i:29466438 original size:26 final size:26
Alignment explanation
Indices: 29466402--29466471 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
29466392 GTTGGCTTAG
29466402 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
29466428 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
29466454 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
29466472 CAATCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:29466831 original size:26 final size:25
Alignment explanation
Indices: 29466796--29466853 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 25
29466786 GTTGACTTAG
29466796 GCATCGGAGTTCATCCCCAGTCTAA
1 GCATCGGAGTTCATCCCCAGTCTAA
*
29466821 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATCCCCAGTCTAA
29466847 G-ATCGGA
1 GCATCGGA
29466854 TCGGACTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
24 4 0.13
25 6 0.19
26 21 0.68
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAGTCTAA
Found at i:29467183 original size:159 final size:158
Alignment explanation
Indices: 29466821--29467196 Score: 373
Period size: 159 Copynumber: 2.4 Consensus size: 158
29466811 CCCAGTCTAA
* * *
29466821 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGACCGGCA
* * * *
29466886 ACACGCAAGGGGGACTGGGCCGATCCCCTGCTTGCGCACTCTGCCTCTCTGGTCGACTGAGCGCT
66 ACACGCAAGGGGGACTGGGCCGATCCCCTGCTTGCGCACTATGCCTCTCTGGTCGACTCAGCCCC
* * * *
29466951 CGCACTCCCGTTTCGTGGGTTGGCTTAG
131 CGAACGCCCGTTTCGTGGGTTGACATAG
* * * * * ** * * * * * *
29466979 GCATAGGGAGCTCATTGCAAGTCTAAG-CCCTAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGACAGCAGGACCGGC
* * * * *
29467043 AGCACGTAGAGGGGGACCT-GGCCGGTCCCC-GACTTGTGCATTATGCCTCTCTGG-CTGACTCA
65 AACACGCA-AGGGGGA-CTGGGCCGATCCCCTG-CTTGCGCACTATGCCTCTCTGGTC-GACTCA
*
29467105 GCCCCCGAACGCTCGTTTCGTGGGTTGACATAG
126 GCCCCCGAACGCCCGTTTCGTGGGTTGACATAG
* * * *
29467138 GCATATGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGTAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGA
29467197 TTGACAGCAC
Statistics
Matches: 168, Mismatches: 44, Indels: 11
0.75 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 53 0.32
159 109 0.65
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGACCGGCA
ACACGCAAGGGGGACTGGGCCGATCCCCTGCTTGCGCACTATGCCTCTCTGGTCGACTCAGCCCC
CGAACGCCCGTTTCGTGGGTTGACATAG
Found at i:29467206 original size:159 final size:158
Alignment explanation
Indices: 29466821--29467322 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
29466811 CCCAGTCTAA
* * *
29466821 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * *
29466886 ACACGCA-AGGGGGACTGGGCCGATCCCCTG-CTTGCGCACTCTGCCTCTCTGG-TCGACTGAGC
66 GCACGCAGAGGGGGACT-GGCCGGTCCCC-GACTTGTGCATTCTGCCTCTCTGGCT-GACTGAGC
* * * *
29466948 GCTCGCACTCCCGTTTCGTGGGTTGGCTTAG
128 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * ** * * * * * * *
29466979 GCATAGGGAGCTCATTGCAAGTCTAAG-CCCTAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGACAGCAGGATCGGC
* * * *
29467043 AGCACGTAGAGGGGGACCTGGCCGGTCCCCGACTTGTGCATTATGCCTCTCTGGCTGACTCAGCC
65 AGCACGCAGAGGGGGA-CTGGCCGGTCCCCGACTTGTGCATTCTGCCTCTCTGGCTGACTGAGCG
* *
29467108 CCCGAACGCTCGTTTCGTGGGTTGACATAG
129 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
29467138 GCATATGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGTAGGATTGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * * * * *
29467203 GCACGCAG-GGGGGA-TCGAGACGGTCCTCGACTTGTGCATTCTACCTCTCCGACTGGCTGAGTG
66 GCACGCAGAGGGGGACT-G-GCCGGTCCCCGACTTGTGCATTCTGCCTCTCTGGCTGACTGAGCG
* * * *
29467266 CCTGTACGCTCATTTCATGGGTTGGCTTAG
129 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
29467296 GCATACGGAGTTCA-TTCCATGTCTAAG
1 GCATACGGAGTTCATTTCCA-GTCTAAG
29467323 CATACAGACT
Statistics
Matches: 269, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 137 0.51
159 118 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGAGGGGGACTGGCCGGTCCCCGACTTGTGCATTCTGCCTCTCTGGCTGACTGAGCGCC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29467326 original size:26 final size:26
Alignment explanation
Indices: 29467296--29467355 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
29467286 GTTGGCTTAG
* *
29467296 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGACTTCATTCGCA-GTCTAA
29467322 GCATACAGACTTCATTCGCAGTCTAA
1 GCATACAGACTTCATTCGCAGTCTAA
29467348 G-AT-CAGAC
1 GCATACAGAC
29467356 CGAACCGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 22 0.71
27 2 0.06
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGACTTCATTCGCAGTCTAA
Found at i:29467612 original size:158 final size:158
Alignment explanation
Indices: 29467322--29467655 Score: 411
Period size: 158 Copynumber: 2.1 Consensus size: 158
29467312 CCATGTCTAA
* * * ** *
29467322 GCATACAGACTTCATTCGCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
29467387 GCACGTAGAGGGGAACGGGCCGATCTCTGGCTTATGCATTCTGCCTCTTCGGTCAGCTGAGCGCC
66 GCAAGTAGAGGGGAACGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCACC
*
29467452 CGTACACCCATTTTGTGGGTTGGCTTAG
131 CGTACACCCATTTCGTGGGTTGGCTTAG
* * *
29467480 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
29467545 GCAAGTAGGGGGGACCGGGCTGATCCCCGAG-TTGCGCATTCTGCCTCTCCGATC-GACTGTGCA
66 GCAAGTAGAGGGGAACGGGCCGATCCCCG-GCTTACGCATTCTGCCTCTCCGATCAG-CTGAGCA
* *
29467608 CCCGTACACTCGTTTCGTGGGTTGGCTTAG
129 CCCGTACACCCATTTCGTGGGTTGGCTTAG
*
29467638 GCATACGGAGTTCATTCC
1 GCATACAGAGTTCATTCC
29467656 ATGCCTAAGC
Statistics
Matches: 149, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
157 1 0.01
158 147 0.99
159 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACA
GCAAGTAGAGGGGAACGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCACC
CGTACACCCATTTCGTGGGTTGGCTTAG
Found at i:29467674 original size:26 final size:26
Alignment explanation
Indices: 29467638--29467707 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
29467628 GTTGGCTTAG
29467638 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
29467664 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
29467690 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
29467708 CAATCTAAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:29467849 original size:210 final size:210
Alignment explanation
Indices: 29467480--29467864 Score: 477
Period size: 210 Copynumber: 1.8 Consensus size: 210
29467470 GTTGGCTTAG
* * *
29467480 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATAGGACCAAACCGAGGGTTGCGACAGTAGGATCGACA
* * * * * * *
29467545 GCAAGTAGGGGGGACCGGGCTGATCCCCGAGTTGCGCATTCTGCCTCTCCGATCGACTGTGCACC
66 GCAAGCAGGGGGGACCGGGCTAATCCCCGAGTTACACATTCTACCTCTCCGACCGACTGAGCACC
* * * *
29467610 CGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
131 CGCACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATACGGAGT
29467675 TCATTCCATGCCTAA
196 TCATTCCATGCCTAA
* * * *
29467690 GCATACGGAGTTCATTCCCAATCTAAGATAGGACCAGACCGAGGGTTGC-AGCAGTAGGATTGGC
1 GCATACAGAGTTCATTCCCAATCTAAGATAGGACCAAACCGAGGGTTGCGA-CAGTAGGATCGAC
* * * * ** **
29467754 AGCACGCAGGGGGGATCGAG-TCAATCCCCGATTTACACATTCTACCTCTCCGACCGGTTGAGGG
65 AGCAAGCAGGGGGGACCGGGCT-AATCCCCGAGTTACACATTCTACCTCTCCGACCGACTGAGCA
** *
29467818 CCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTTATTC
129 CCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTC
29467865 TGTGTCTAAG
Statistics
Matches: 144, Mismatches: 29, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
209 2 0.01
210 142 0.99
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (210 bp):
GCATACAGAGTTCATTCCCAATCTAAGATAGGACCAAACCGAGGGTTGCGACAGTAGGATCGACA
GCAAGCAGGGGGGACCGGGCTAATCCCCGAGTTACACATTCTACCTCTCCGACCGACTGAGCACC
CGCACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCTAAGCATACGGAGT
TCATTCCATGCCTAA
Found at i:29468065 original size:25 final size:25
Alignment explanation
Indices: 29468032--29468080 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
29468022 GTTGACTTAG
29468032 GCATCGGAGTTCATCCCCA-TCTAA
1 GCATCGGAGTTCATCCCCAGTCTAA
*
29468056 GCATACGGAGTTCATTCCCAGTCTA
1 GCAT-CGGAGTTCATCCCCAGTCTA
29468081 CAGATCGATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 14 0.64
26 4 0.18
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAGTCTAA
Found at i:29468544 original size:26 final size:26
Alignment explanation
Indices: 29468514--29468566 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29468504 GTTGGCTTAG
*
29468514 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29468540 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29468566 G
1 G
29468567 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29469050 original size:159 final size:158
Alignment explanation
Indices: 29468809--29469408 Score: 559
Period size: 159 Copynumber: 3.8 Consensus size: 158
29468799 CAGCAGGATT
* * * *
29468809 GGCAGCACGCAG-GGAGGACCGGGTCGATCC-CTGGCTTGCGCATTCTACCTCTTCGGCTGGCTG
1 GGCAGCACGCAGAGGGGGATCGGGTCGATCCTC-GGCTTGCGCATTCTGCCT-TTCGGCCGGCTG
* * *
29468872 AGCGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTATGCCC
64 AGCGCCCGAACGCTC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
*
29468936 CAGCCAGACCAAGGGTTGTGGCAGCGGGACC
128 CAGCCAGACCAAGGGTTGTGGCAACGGGACC
* * * *
29468967 GGCAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTGTCTTTCTGGCCGGTTGA
1 GGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTTTC-GGCCGGCTGA
* * *
29469032 GCGCCCGTACGCTCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTA
65 GCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
** * *
29469097 GCCAGACTGAGGGTTGTGTCAACGGGATC
130 GCCAGACCAAGGGTTGTGGCAACGGGACC
* * * * * * *
29469126 GGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCGGTCAGCTCA
1 GGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCT-TTCGGCCGGCTGA
* * * * * **
29469191 GCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-ATCTAAG-ATC
65 GCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCC
* * * *** * *** *
29469254 AGACTAGACCGAGGGCTACAGTAGTAGGATC
129 AG-CCAGACCAAGGGTTGTGGCAACGGGACC
* * * * * *
29469285 GACAGCACG-AG-GGGGGACCGGGTCGGTCC-CTGACTTGCGCATTCTGCCTCTTCAGCCGACTG
1 GGCAGCACGCAGAGGGGGATCGGGTCGATCCTC-GGCTTGCGCATTCTGCCT-TTCGGCCGGCTG
* * * * * *
29469347 AGAGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
64 AGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
29469409 ATACGGAGTT
Statistics
Matches: 361, Mismatches: 71, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
156 3 0.01
157 87 0.24
158 18 0.05
159 246 0.68
160 7 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GGCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTTTCGGCCGGCTGAG
CGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
CCAGACCAAGGGTTGTGGCAACGGGACC
Found at i:29469430 original size:26 final size:26
Alignment explanation
Indices: 29469381--29469433 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29469371 GTTGGCTTAG
*
29469381 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
29469407 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
29469433 G
1 G
29469434 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:29469918 original size:26 final size:26
Alignment explanation
Indices: 29469882--29469932 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29469872 TGACTTAGGT
* *
29469882 ATACTGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCACAGTCTAAGC
*
29469908 ATACAGAGTTCATTCACAGTCTAAG
1 ATACAGAGTTCATCCACAGTCTAAG
29469933 ATCAAACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCACAGTCTAAGC
Found at i:29470925 original size:26 final size:26
Alignment explanation
Indices: 29470889--29470941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29470879 GTTCACTTAG
*
29470889 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
29470915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29470941 G
1 G
29470942 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29471101 original size:25 final size:26
Alignment explanation
Indices: 29471072--29471123 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
29471062 GTTGACTTAG
29471072 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29471097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29471123 G
1 G
29471124 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29471272 original size:186 final size:181
Alignment explanation
Indices: 29470855--29471284 Score: 574
Period size: 186 Copynumber: 2.3 Consensus size: 181
29470845 CAGCCGACTA
* * *
29470855 AGCGCCCGTACGCTCGTTTCGTGGGTTCACTTAGGCATATGGAGTTCATCCCTAGTCTAAGCATA
1 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATA
* *
29470920 CGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAGGATTGATAGCACG
65 CGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTA-GACAGCAGGATCGACAGCACG
* * * * *
29470985 CAGGGGGACCGGGTCGATCCTCGACTTACGCATTCTGCCTCTTCGGCTGGCTG
129 CAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCTCCGACCGGCTG
* *
29471038 AGCGCCTGTACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATAC
1 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATAC
* *
29471103 GGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGGATCGAGGGTT-GGCAGCAGGATCGACAGC
66 GGAGTTCATTCCCAGTCTAAGATCGGAT-----CGGACCGAGGGTTAGACAGCAGGATCGACAGC
* * * *
29471167 ACGCATGGGGGATCGGGCCGATCTTCGACTTGCGTATTCTACCTCTCCGACCGGCTG
126 ACGCA-GGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCTCCGACCGGCTG
* * * *
29471224 AGCGCCCGCACGCCCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAG
1 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
29471285 ATTGGACCAG
Statistics
Matches: 216, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
182 41 0.19
183 47 0.22
185 20 0.09
186 85 0.39
187 23 0.11
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (181 bp):
AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTAGACAGCAGGATCGACAGCACGCA
GGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCTCCGACCGGCTG
Found at i:29471444 original size:25 final size:26
Alignment explanation
Indices: 29471415--29471465 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29471405 GTTGACTTAG
*
29471415 GCAT-AGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
*
29471440 GCATAAGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
29471466 AATTAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:29472024 original size:309 final size:311
Alignment explanation
Indices: 29471447--29472024 Score: 675
Period size: 318 Copynumber: 1.8 Consensus size: 311
29471437 TAAGCATAAG
* * **
29471447 GAGTTCATTCCCAATCTAAAATTAGATCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACACA
1 GAGTTCATTCCCAATCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACA
* * * * *
29471512 GGACGGATCGGGCCAATCCCTGGCTTTCGCATTCTGCCTCTCTGGCCGGCTGAGCTCCCGCATGC
66 GGACGGATCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGACTGAGCTCCCGCATGC
* * * *
29471577 CTGTTTCGTGGGTTGGCTTAGGCATAAGTAGTTCATTTCATGTCTAAGCCCTAGCTAGACCGAGG
131 CTGTTTCGTGGATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACC---G
** *
29471642 GTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATTGGGCCAATCCCCAGCTTGCGTATTATG
193 G-TGT-G-AGCGGGATCGACAGCACGCAGAAAGGGATCGGGCCAATCCCCAGCTTGCGTATTATG
29471707 CCTCTCCGGCCAGTTCAGCACCCACACGCTTATTTCATGGGTTGACTTAGGCATACA
255 CCTCTCCGGCCAGTTCAGCACCCACACGCTTATTTCATGGGTTGACTTAGGCATACA
* * * * * * *
29471764 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGTAGGATTGACAGCACACA
1 GAGTTCATTCCCAATCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACA
* * * * *
29471829 GGGCTGGATCGAGCCGATCCCCGGCTTGCACATTTTGCCTCT-TCGGTCGACTGAG-TGCCCGTA
66 GGAC-GGATCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCT-GGCCGACTGAGCT-CCCGCA
* * *
29471892 TG-CTCGTTTTGTGTATTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGAC
128 TGCCT-GTTTCGTGGATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGAC
* * *** *
29471955 C-G-GT-AGCGGGATTGTCAGCACGCAGAAAGGGATCGGGTTGATCCCCGGCTTGCGTATTATGC
191 CGGTGTGAGCGGGATCGACAGCACGCAGAAAGGGATCGGGCCAATCCCCAGCTTGCGTATTATGC
29472017 CTCTCCGG
256 CTCTCCGG
29472025 TTGGCATCTC
Statistics
Matches: 219, Mismatches: 37, Indels: 18
0.80 0.14 0.07
Matches are distributed among these distances:
309 57 0.26
312 2 0.01
314 1 0.00
317 62 0.28
318 97 0.44
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (311 bp):
GAGTTCATTCCCAATCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACACA
GGACGGATCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGACTGAGCTCCCGCATGC
CTGTTTCGTGGATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGGTG
TGAGCGGGATCGACAGCACGCAGAAAGGGATCGGGCCAATCCCCAGCTTGCGTATTATGCCTCTC
CGGCCAGTTCAGCACCCACACGCTTATTTCATGGGTTGACTTAGGCATACA
Found at i:29472109 original size:26 final size:26
Alignment explanation
Indices: 29472079--29472130 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29472069 GTTGACTTAG
*
29472079 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
29472105 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29472131 AATCAGATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29473290 original size:26 final size:26
Alignment explanation
Indices: 29473260--29473311 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29473250 GTTGACTTAG
*
29473260 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
29473286 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29473312 AATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29473765 original size:13 final size:13
Alignment explanation
Indices: 29473747--29473772 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29473737 TGCGCATTCT
29473747 GCCTCTCCGACCG
1 GCCTCTCCGACCG
29473760 GCCTCTCCGACCG
1 GCCTCTCCGACCG
29473773 ACTGAGTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.54, G:0.23, T:0.15
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:29474166 original size:26 final size:26
Alignment explanation
Indices: 29474129--29474181 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29474119 GTTGGCTATG
29474129 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
*
29474155 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
29474181 G
1 G
29474182 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:29474362 original size:26 final size:26
Alignment explanation
Indices: 29474326--29474375 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
29474316 GTTGACTTAG
*
29474326 GCATACGAAGTTCATCCCCAGTCTGA
1 GCATACAAAGTTCATCCCCAGTCTGA
**
29474352 GCATACAAAGTTCATTTCCAGTCT
1 GCATACAAAGTTCATCCCCAGTCT
29474376 AAGATCAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTGA
Found at i:29475400 original size:26 final size:26
Alignment explanation
Indices: 29475361--29475413 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29475351 TGGGTTGACT
29475361 TAAGCATACCGAGTTCA-TCCCTAGTC
1 TAAGCATACCGAGTTCATTCCC-AGTC
**
29475387 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
29475413 T
1 T
29475414 GAGATCAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATTCCCAGTC
Found at i:29475875 original size:157 final size:156
Alignment explanation
Indices: 29475390--29475930 Score: 457
Period size: 157 Copynumber: 3.4 Consensus size: 156
29475380 CCTAGTCTAA
* * ** * *
29475390 GCATATGGAGTTCATTCCCA-GTCTGAGATCAGACCGGACTGAGGTTTGTAGCAGCAGGATCAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCA-C
* * * * * * * * *
29475454 AACACGCAGGGTGGACCGGGCCAAACCCCGGCTTGTGCATTCTACCTTTCCCACCGATTGAGTGC
64 AGCACGCAGGG-GGACCGGACCGATCCCCGGCTTGTGCATTCTACCTCTCCGACTGACTGAGAGC
* *
29475519 CCGCACGC-CCGTTTCATGGGTTGGCTTAG
128 CCGAACGCTCC-TTTCGTGGGTTGGCTTAG
* ** * ** *
29475548 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGA-CAGAGGGTTGTGGCAGTGGGACCAA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCA-AGGGTTGTGGCAGCAGGATC-A
* * ** * * * * * *
29475611 TAGCACGCAGAGGGGGATC-GAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGATTGGCTCAA
63 CAGCACGC--AGGGGGACCGGA-CCGATCCCCGGCTTGTGCATTCTACCTCTCCGACTGACTGAG
** * * *
29475675 AGGTCGAATGCTCATTTCGTGGGTTGACTTAG
125 AGCCCGAACGCTCCTTTCGTGGGTTGGCTTAG
*
29475707 GCATACGGAGTTCATTCACA-GTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATC-AC
* * *
29475771 AGCACGCAGGGGGACCGGACCGGTCCCCGACTTGTGCATTCTACCTCTCCGACTGACTGAGCGCC
64 AGCACGCAGGGGGACCGGACCGATCCCCGGCTTGTGCATTCTACCTCTCCGACTGACTGAGAGCC
*
29475836 CGTACGCTCCTTTCGTGGGTTGGCTTAG
129 CGAACGCTCCTTTCGTGGGTTGGCTTAG
* ** ** *
29475864 GCATACAGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCAACAGGATCAGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCA-C
29475928 AGC
64 AGC
29475931 GGGATCGGTA
Statistics
Matches: 295, Mismatches: 73, Indels: 31
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 120 0.41
158 54 0.18
159 109 0.37
160 9 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCACAG
CACGCAGGGGGACCGGACCGATCCCCGGCTTGTGCATTCTACCTCTCCGACTGACTGAGAGCCCG
AACGCTCCTTTCGTGGGTTGGCTTAG
Found at i:29476068 original size:26 final size:26
Alignment explanation
Indices: 29476032--29476084 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29476022 GTTGGCTTAG
*
29476032 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
29476058 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
29476084 G
1 G
29476085 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:29476278 original size:26 final size:26
Alignment explanation
Indices: 29476242--29476294 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29476232 GTTGACTTAG
29476242 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29476268 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29476294 G
1 G
29476295 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29476611 original size:26 final size:26
Alignment explanation
Indices: 29476581--29476636 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
29476571 TGGGTTGACT
*
29476581 TAAGCATATGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* **
29476607 TAAGCATACGGAGTTTATTTCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
29476633 TAAG
1 TAAG
29476637 ATCTAACTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:29477662 original size:26 final size:26
Alignment explanation
Indices: 29477624--29477674 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29477614 TGACTTAGGC
* *
29477624 ATACGGAGTTCATCCCCAGCCTAAGG
1 ATACAGAGGTCATCCCCAGCCTAAGG
* *
29477650 ATACAGAGGTCATTCCCAGTCTAAG
1 ATACAGAGGTCATCCCCAGCCTAAG
29477675 ATTGGACTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (26 bp):
ATACAGAGGTCATCCCCAGCCTAAGG
Found at i:29478143 original size:157 final size:155
Alignment explanation
Indices: 29477650--29478144 Score: 418
Period size: 155 Copynumber: 3.2 Consensus size: 155
29477640 CAGCCTAAGG
* * * *
29477650 ATACAGAGGTCATTCCCAGTCTAAGATTGGA-CTGAATCGAGGGTTACGGTAACAGGATCGACAG
1 ATACAGAGTTCATTCCCAGTCTAAGATTGGATC-GAA-CGAGGGTTGCGGCAGCAGGATCGACAG
* * ** * *
29477714 CCTGC-AGGGAGGATCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGATCGGCTGAGTGCC
64 CATGCAAGGG-GGATCGGGTCGAT-CCCGGCTAGTGCATTCTGCCTCTCCGGTCGGCTGAGTG-C
*
29477778 CGCAAGCCTA-TTTCATGGGTTGGCTCT-GGC
126 CGCACG-CTAGTTTCATGGGTTGGCT-TAGGC
** * * * *
29477808 ATAGGGAGTTCATT-CCATGTCTAAGACTGGAT----CGAGGGTTGTGGCAGCAAGACCGACAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGATTGGATCGAACGAGGGTTGCGGCAGCAGGATCGACAGC
** * * * * *
29477868 ACACAGAGGGGGATCGAGCCGATCCTCGGCTTA-TGCATTATGCCTCTCCGGTTGGCTCAGTGCC
65 ATGCA-AGGGGGATCGGGTCGATCC-CGGC-TAGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
* * * ** *
29477932 TGGCACACTCGTTTCGTATGTTGACTTAGGC
127 --GCACGCTAGTTTCATGGGTTGGCTTAGGC
* * * *
29477963 ATACGGAGTTCATTCCCAATCTAATATTGGATCGAACCGAGGGTTGCGGCAGCAGGATCGATAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATTGGATCGAA-CGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * *
29478028 ATGCAAGGGGGATCGGGTCGGTACCCGGCTAGTGCATTCTGCCTCCCCGGCCGACTGAGCGCCGC
65 ATGCAAGGGGGATCGGGTCGAT-CCCGGCTAGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCCGC
29478093 ACGCTAGTTTCATGGGTTGGCTTAGGC
129 ACGCTAGTTTCATGGGTTGGCTTAGGC
29478120 ATACAGAGTTCATT-CCATGTCTAAG
1 ATACAGAGTTCATTCCCA-GTCTAAG
29478145 CCCCAGCCGG
Statistics
Matches: 259, Mismatches: 59, Indels: 39
0.73 0.17 0.11
Matches are distributed among these distances:
153 27 0.10
154 40 0.15
155 46 0.18
156 6 0.02
157 44 0.17
158 25 0.10
159 42 0.16
160 29 0.11
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (155 bp):
ATACAGAGTTCATTCCCAGTCTAAGATTGGATCGAACGAGGGTTGCGGCAGCAGGATCGACAGCA
TGCAAGGGGGATCGGGTCGATCCCGGCTAGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCCGCAC
GCTAGTTTCATGGGTTGGCTTAGGC
Found at i:29478328 original size:26 final size:26
Alignment explanation
Indices: 29478292--29478341 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29478282 GACTTAGGCA
29478292 TACGGAGTTCA-TCCCTAGTCTAAGCT
1 TACGGAGTTCATTCCC-AGTCTAAGCT
29478318 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
29478342 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:29478816 original size:26 final size:26
Alignment explanation
Indices: 29478787--29478839 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29478777 GTTGGCTTAG
*
29478787 GCATACGGAGATCATT-CCATGTCTAA
1 GCATACAGAGATCATTCCCA-GTCTAA
* *
29478813 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
29478839 G
1 G
29478840 ATCGGATAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:29479497 original size:157 final size:158
Alignment explanation
Indices: 29479216--29479584 Score: 373
Period size: 157 Copynumber: 2.3 Consensus size: 158
29479206 GCGGGACCGG
* * * * * *
29479216 CAGCACGCAGAGGGGGATCAGGTCAATCCCCAGCTTGCGTATTATGCCTCTCCGGTCGACTCAGC
1 CAGCACGCAG-GGGGGATCGGGTCGATCCCCAGCTAGCGCATTATGCCTCTCCGGCCGACTAAGC
* * * * * ** *
29479281 GCCCGCACGCTCGTTTCATGGGTTGACTTCAGCATACAGAGTTTATTCCCACTTTAAGATCGGAT
65 GCCCGCACGCTCATTTCATGGGTAGACTTAAGCATACAGAGTTCATTCCCACTCTAAGATCAAAC
* *
29479346 CGGACTAAGGGTTGCTACAACAGGATCGA
130 CGAACTAAGGGTTGCGACAACAGGATCGA
* * * * * * *
29479375 CAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTAGTGCATTTTGCCTGTCTGGCCGGCTAAGCT
1 CAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTAGCGCATTATGCCTCTCCGGCCGACTAAGCG
* * * *
29479440 CCCGTACGCTCATTTCGTGGGTAGTC-TAAGCATACGGAGTTCATTCCC-CGTCTAAGATCAAAC
66 CCCGCACGCTCATTTCATGGGTAGACTTAAGCATACAGAGTTCATTCCCAC-TCTAAGATCAAAC
* * **
29479503 CGAACTGAGGGTTGCGATAGTAGGATCGA
130 CGAACTAAGGGTTGCGACAACAGGATCGA
* * * * * *
29479532 CAGCACGTAGGGGGGACCGGGTCGATCCCTAGCTTGCGCATTCTACCTCTCCG
1 CAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTAGCGCATTATGCCTCTCCG
29479585 ATCGGCTGAG
Statistics
Matches: 168, Mismatches: 41, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
156 1 0.01
157 94 0.56
158 63 0.38
159 10 0.06
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
CAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTAGCGCATTATGCCTCTCCGGCCGACTAAGCG
CCCGCACGCTCATTTCATGGGTAGACTTAAGCATACAGAGTTCATTCCCACTCTAAGATCAAACC
GAACTAAGGGTTGCGACAACAGGATCGA
Found at i:29479949 original size:474 final size:475
Alignment explanation
Indices: 29478945--29479958 Score: 1202
Period size: 474 Copynumber: 2.1 Consensus size: 475
29478935 CTCCGATCAA
* * * * *
29478945 CCTCTCCGAGCGA-CTGAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATAAGGAGTTCA
1 CCTCTCCG-GCCAGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
29479009 TTCCCAGTCTAAGATCTAACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACAAAGGGGGGA
65 TTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACAAAGGGGGGA
* * * * * *
29479074 CCGAACCAATCCCCAACTTGCGCATTCTGCGTCTCCGGTGTACTGAGCACCCTCACGCCTGTTTT
130 CCGAACCAATCCCCAACTTGCGCATTCTACCTCTCCGATGTACTGAGCACCCACACGCCTCTTTC
* * * * *
29479139 GTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
195 ATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGG
* * * * *
29479204 TAGCGGGACCGGCAGCACGCAGAGGGGGATCAGGTCAATCCCCAGCTTGCGTATTATGCCTCTCC
260 CAGCGGGACCGGCAGCACGCAGAGGGGGATCAGGCCAATCACCAGCCTGCGCATTATGCCTCTCC
* * *
29479269 GGTCGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTCAGCATACAGAGTTTATTCCCACT
325 GGTAGACTCAGCGCCCGCACCCTCGTTTCATGGGTTGACTTCAGCATACAGAGTTCATTCCCACT
* * * * * * **
29479334 TTAAGATCGGATCGGACTAAGGGTTGCTACAACAGGATCGACAGCACGCAGGGGGGATCGGGTCG
390 CTAAGATCGAATCAGACCAAGGGTTGCTACAACAGGATCGACAGCACGCAGGGGGGACCCGACCG
*
29479399 ATCCCCGGCTAGTGCATTTTG
455 ATCCCCGGCTAGTGCATTCTG
* * * * * * * *
29479420 CCTGTCTGGCCGGCTAAGCTCCCGTACGCTCATTTCGTGGGTAGTC-TAAGCATACGGAGTTCAT
1 CCTCTCCGGCCAGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * **
29479484 TCCCCGTCTAAGATCAAACC-GAACTGAGGGTTGCGATAGTAGGATCGACAGCACGTAGGGGGGA
66 TCCCAGTCTAAGATCAAACCAG-ACCGAGGGTTACGACAGCAGGATCGACAGCACAAAGGGGGGA
*** * * * *
29479548 CCGGGTCGATCCCTAGCTTGCGCATTCTACCTCTCCGATCG-GCTGAGCACCCACACGTCC-CTT
130 CCGAACCAATCCCCAACTTGCGCATTCTACCTCTCCGAT-GTACTGAGCACCCACACG-CCTCTT
*
29479611 TCATAGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGT
193 TCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGT
* * * *
29479676 GGCAGCGGGACCGGCAGCACGCAGAGGGGGA-CTGGGCCGATCATCGGCCTGCGCATTATGCCTC
258 GGCAGCGGGACCGGCAGCACGCAGAGGGGGATC-AGGCCAATCACCAGCCTGCGCATTATGCCTC
* * * * *
29479740 TTCGGCTAG-CTCAGCTCCCGCACCCTCGTTTCGTGGGTTGACTT-ATGCGTACGGAGTTCATTC
322 TCCGG-TAGACTCAGCGCCCGCACCCTCGTTTCATGGGTTGACTTCA-GCATACAGAGTTCATTC
* * ** * *
29479803 CCAGTCTAAGATCGAA-CTAGACCGA-GGTTGCTGTAGCAGGATCGACAGCACTCAGGGGGGACC
385 CCACTCTAAGATCGAATC-AGACCAAGGGTTGCTACAACAGGATCGACAGCACGCAGGGGGGACC
*
29479866 CGACCGATCCCCGGCTTGTGCATTCTG
449 CGACCGATCCCCGGCTAGTGCATTCTG
* * *
29479893 CCTCTCCGGCTAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCAGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
29479958 T
66 T
29479959 GCATGTCTAA
Statistics
Matches: 447, Mismatches: 83, Indels: 19
0.81 0.15 0.03
Matches are distributed among these distances:
473 96 0.21
474 314 0.70
475 37 0.08
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (475 bp):
CCTCTCCGGCCAGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACAAAGGGGGGAC
CGAACCAATCCCCAACTTGCGCATTCTACCTCTCCGATGTACTGAGCACCCACACGCCTCTTTCA
TAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGC
AGCGGGACCGGCAGCACGCAGAGGGGGATCAGGCCAATCACCAGCCTGCGCATTATGCCTCTCCG
GTAGACTCAGCGCCCGCACCCTCGTTTCATGGGTTGACTTCAGCATACAGAGTTCATTCCCACTC
TAAGATCGAATCAGACCAAGGGTTGCTACAACAGGATCGACAGCACGCAGGGGGGACCCGACCGA
TCCCCGGCTAGTGCATTCTG
Found at i:29479992 original size:26 final size:26
Alignment explanation
Indices: 29479943--29479994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29479933 GTTGGCTTAG
*
29479943 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
29479969 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
29479995 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:29480687 original size:26 final size:26
Alignment explanation
Indices: 29480651--29480703 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29480641 GTTGACTTAG
29480651 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29480677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29480703 G
1 G
29480704 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29481037 original size:158 final size:158
Alignment explanation
Indices: 29480870--29481166 Score: 350
Period size: 158 Copynumber: 1.9 Consensus size: 158
29480860 AGCCCCAGTC
* *
29480870 AGACTGAGGGTTATGGCAAG-A-GATCGACAGCATGCAGAGGAGGATCGGGTCAAT-CCCTGGCG
1 AGACCGAGGGTTATGG-AAGTAGGATCGACAGCACGCA-AGGAGGATCGGGTCAATCCCCT-GCG
* * *
29480932 TACGCATTATGCCTCTCCAAGCAGCTCAGCGCCCGCACGCTCGTTTCATGGG-TTGACTTAGGCA
63 TACACATTATACCTCTCCAAGCAGCTCAGCGACCGCACGCTCGTTTCATGGGTTTG-CTTAGGCA
29480996 TATGGAGTTCATTTCCAGTATAAGATTGGACT
127 TATGGAGTTCATTTCCAGTATAAGATTGGACT
* * * * * ** *
29481028 AGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAGGGGGCTCGGGTCGATCCCCTGTTTGC
1 AGACCGAGGGTTATGGAAGTAGGATCGACAGCACGCAAGGAGGATCGGGTCAATCCCCTGCGTAC
* * * * * * *
29481093 ACATTCTACCTTTTCGATCGGCTGAGCGACCGCACGCTCGTTTCATGGGTTTGCTTAGGCATATG
66 ACATTATACCTCTCCAAGCAGCTCAGCGACCGCACGCTCGTTTCATGGGTTTGCTTAGGCATATG
29481158 GAGTTCATT
131 GAGTTCATT
29481167 CCTTGTCTAT
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.02
158 92 0.80
159 21 0.18
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.26
Consensus pattern (158 bp):
AGACCGAGGGTTATGGAAGTAGGATCGACAGCACGCAAGGAGGATCGGGTCAATCCCCTGCGTAC
ACATTATACCTCTCCAAGCAGCTCAGCGACCGCACGCTCGTTTCATGGGTTTGCTTAGGCATATG
GAGTTCATTTCCAGTATAAGATTGGACT
Found at i:29481200 original size:26 final size:26
Alignment explanation
Indices: 29481151--29481201 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29481141 GTTTGCTTAG
* **
29481151 GCATATGGAGTTCATTCCTTGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
29481177 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
29481202 AGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:29482495 original size:26 final size:26
Alignment explanation
Indices: 29482459--29482509 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29482449 TGGCTTAGGC
29482459 ATACGAAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCAT-TCTAAGT
*
29482485 ATACGGAGTTCATTCCCATTCTAAG
1 ATACGAAGTTCATTCCCATTCTAAG
29482510 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCATTCTAAGT
Found at i:29483500 original size:180 final size:180
Alignment explanation
Indices: 29483242--29483574 Score: 497
Period size: 180 Copynumber: 1.9 Consensus size: 180
29483232 GGGTTACGGT
* * * * * *
29483242 AGCAGGATCGACAGCACATAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGA
1 AGCAGGATCGACAGCACACAGGAGGGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCAA
* *
29483307 CCGACTGAGCACCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCT
66 CCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCT
*
29483372 AAGCATACGGAGTTCATTCCCAGACCGAGGGTTGCAATAGCAGGACCAGC
131 AAGCATACAGAGTTCATTCCCAGACCGAGGGTTGCAATAGCAGGACCAGC
** * *
29483422 AGCAGGATCGACAGCATGCAGGAGGGACCAGGCCGAT-CCCTGCCTTACGCATTCTGCCTCTCCA
1 AGCAGGATCGACAGCACACAGGAGGGACCAGGCCGATCCCCAG-CTTACGCATTCTACCTCTCCA
* * * *
29483486 ATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
65 ACCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTC
29483551 TAAGCATACAGAGTTCATTCCCAG
130 TAAGCATACAGAGTTCATTCCCAG
29483575 TCTAAGATCG
Statistics
Matches: 135, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
179 4 0.03
180 131 0.97
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (180 bp):
AGCAGGATCGACAGCACACAGGAGGGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCAA
CCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCT
AAGCATACAGAGTTCATTCCCAGACCGAGGGTTGCAATAGCAGGACCAGC
Found at i:29483558 original size:26 final size:26
Alignment explanation
Indices: 29483528--29483580 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29483518 GTTGGCTTAG
*
29483528 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29483554 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29483580 G
1 G
29483581 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29483726 original size:197 final size:196
Alignment explanation
Indices: 29483391--29483752 Score: 517
Period size: 197 Copynumber: 1.8 Consensus size: 196
29483381 GAGTTCATTC
* * *
29483391 CCAGACCGAGGGTTGCAATAGCAGGACCAGCAGCAGGATCGACAGCATGCAGGAGGGACCAGGCC
1 CCAGACCGAGGGTTACAACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGAGGGACCAGGCC
* * * * *
29483456 GATCCCTGCCTTACGCATTCTGCCTCTCCAATCGACTGAGCACCCGCACGCTCGTTTCATGGGTT
66 GATCCCAGCCTTACGCATTCTACCTCTCCAACCGACTGAGCACCCACACGCTCATTTCATGGGTT
29483521 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
131 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
29483586 A
196 A
* * * * **
29483587 CCAGACCGAGGGTTACGACAGCAGGACCAGTAGCAGGATCGACAGCACGTAGGGGGGGACTGGGC
1 CCAGACCGAGGGTTACAACAGCAGGACCAGCAGCAGGATCGACAGCACGCA-GGAGGGACCAGGC
* * * ** * * *
29483652 CGATCCCAGGCTTGCGCATTCTACCTCTTCGGCCGACTGAGTACCCATACGCTCATTTCGTGGGT
65 CGATCCCAGCCTTACGCATTCTACCTCTCCAACCGACTGAGCACCCACACGCTCATTTCATGGGT
29483717 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29483753 CCCAGCCGGA
Statistics
Matches: 143, Mismatches: 22, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
196 45 0.31
197 98 0.69
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (196 bp):
CCAGACCGAGGGTTACAACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGAGGGACCAGGCC
GATCCCAGCCTTACGCATTCTACCTCTCCAACCGACTGAGCACCCACACGCTCATTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
A
Found at i:29484386 original size:26 final size:26
Alignment explanation
Indices: 29484350--29484402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29484340 GTTGGCTTAG
*
29484350 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
29484376 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
29484402 G
1 G
29484403 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:29484696 original size:184 final size:184
Alignment explanation
Indices: 29484376--29484799 Score: 557
Period size: 184 Copynumber: 2.3 Consensus size: 184
29484366 CCATGTCTAA
* * * * * *
29484376 GCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGA-CTGAGGGTTACGATAGCAAGACTAGC
1 GCATATGGAGTTCATCCCCAGTCTAAGATCAGATCGGATC-GAGGGTTGCGATAGCAAGACTAGC
** * * ** *
29484440 AGCAGGATCGGTAGCATGCAGGGGTGGATCGAGCCAATCCTCGGCTTTCGTATTTTGCCTCTCCA
65 AGCAGGATCGACAGCATGCAGGGGTGGACCGAGCCAATCCCCGGCTTTCACATTCTGCCTCTCCA
* * * * *
29484505 GTCGGCCTCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
130 GTCGGCCTCTCCGGCCAGCTGAACGCCCGCACCCTCATTTCATGGGTTGACTTAG
* * *
29484560 GCATATGGAGTTCATCCCCAGTCTAAGATCAGATCGGATCGAGGGTTGC-AGTTGTAGGACTAGC
1 GCATATGGAGTTCATCCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGA-TAGCAAGACTAGC
*
29484624 AGCAGGATCGACAGCATGTAGGGGTGGACCGAGCCAATCCCCGGCTTTCACATTCTGCCTCTCC-
65 AGCAGGATCGACAGCATGCAGGGGTGGACCGAGCCAATCCCCGGCTTTCACATTCTGCCTCTCCA
*
29484688 GATCGGCCTCTCCGGCCAGCTGAACGCCCGCACCCTCATTTCGTGGGTTGACTTAG
130 G-TCGGCCTCTCCGGCCAGCTGAACGCCCGCACCCTCATTTCATGGGTTGACTTAG
* * * *
29484744 GCATATGAAGTTCATCACCAGTCTAAGATCAGATCGGGTCGAGGGTTGCGACAGCA
1 GCATATGGAGTTCATCCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGCA
29484800 GGATCGATAA
Statistics
Matches: 207, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 203 0.98
185 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATATGGAGTTCATCCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGCAAGACTAGCA
GCAGGATCGACAGCATGCAGGGGTGGACCGAGCCAATCCCCGGCTTTCACATTCTGCCTCTCCAG
TCGGCCTCTCCGGCCAGCTGAACGCCCGCACCCTCATTTCATGGGTTGACTTAG
Found at i:29484934 original size:26 final size:26
Alignment explanation
Indices: 29484904--29484955 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29484894 TTGACTTAGA
*
29484904 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
29484930 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
29484956 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:29485643 original size:26 final size:26
Alignment explanation
Indices: 29485614--29485666 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29485604 GTTCACCTAG
29485614 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29485640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29485666 G
1 G
29485667 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29486147 original size:26 final size:26
Alignment explanation
Indices: 29486117--29486166 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29486107 AGCTTAGGCG
29486117 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
29486143 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
29486167 ATCACCCGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:29487238 original size:26 final size:26
Alignment explanation
Indices: 29487208--29487260 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29487198 GTTGGTTTAG
29487208 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
29487234 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29487260 G
1 G
29487261 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29488578 original size:26 final size:26
Alignment explanation
Indices: 29488542--29488594 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29488532 GTTGACTTAG
29488542 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
29488568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29488594 G
1 G
29488595 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29489088 original size:158 final size:157
Alignment explanation
Indices: 29488655--29489100 Score: 400
Period size: 158 Copynumber: 2.8 Consensus size: 157
29488645 GACTTGGCCG
* * *
29488655 ATCCTCGGCTTGCGCATTCTGCCTC-TCTGGCCGACTGAGCACCCGCACG-TCCGTTTCGTGGGT
1 ATCCCCGGCTTGCGCATTCTGCCTCTTC-GGTCGACTGAGCACCCGCATGCT-CGTTTCGTGGGT
** * * * **
29488718 CAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCAAGGGTTGTGGTAGTGG
64 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCC-AGCGAACCAAGGGTTGTGGTAGCAG
** * *
29488783 GATCGGTAACGTGCAGACAGGTACCGGGCTG
128 GATCGACAACGT-CAGACAGGGACCGGGCTA
* * * * * * ** * * **
29488814 ATCCCTGGCTTGCGCATTATG-ATTTTCGGTCGGCTCAGTGCTCGCATGCCCGTTTCGTGTCTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCATGCTCGTTTCGTGGGTTG
* * * * ** * **
29488878 ACTTATGCATACGAAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCAAGGGTTGTGACAGCAGG
66 GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAG-CGA-ACCAAGGGTTGTGGTAGCAGG
**
29488942 ATCGACAGCACGT-AG-GGGGGACCGGGCTA
129 ATCGACA--ACGTCAGACAGGGACCGGGCTA
* *
29488971 ATCCCCGGCTTGCACATTCTGCCTCTTCGGTCGTCTGAGCACCCGCATGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCATGCTCGTTTCGTGGGTTG
* *
29489036 GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGCTGAACTATGGGTTGTGGTAGCAGGA
66 GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGC-GAACCAAGGGTTGTGGTAGCAGGA
29489101 CCGGTAGTGG
Statistics
Matches: 217, Mismatches: 61, Indels: 19
0.73 0.21 0.06
Matches are distributed among these distances:
156 1 0.00
157 31 0.14
158 157 0.72
159 24 0.11
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCATGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGCGAACCAAGGGTTGTGGTAGCAGGAT
CGACAACGTCAGACAGGGACCGGGCTA
Found at i:29489265 original size:26 final size:26
Alignment explanation
Indices: 29489226--29489278 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29489216 GTTGACTTAG
*
29489226 GCATACGGACTTCATCCCCAGTCTAA
1 GCATAAGGACTTCATCCCCAGTCTAA
* **
29489252 GCATAAGGAGTTCATTTCCAGTCTAA
1 GCATAAGGACTTCATCCCCAGTCTAA
29489278 G
1 G
29489279 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGACTTCATCCCCAGTCTAA
Found at i:29490867 original size:159 final size:158
Alignment explanation
Indices: 29490490--29490879 Score: 421
Period size: 159 Copynumber: 2.5 Consensus size: 158
29490480 TAAGCATATT
* * * * * * *
29490490 TAGTTCATTCCCAGTCTAAGATCAGATCAGACT-GAGGGTTGCGGTAGCAGGATCGACAGCACGT
1 TAGTTCATTCCCAGTCTAAGATTAGA-CCGAATCGAGGGTTGTGGCAGTAGGATCGACAGCACGA
* *
29490554 AGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACG
65 AGGGGGGACCAGGCCAATCCCTGGCTTGCGCATTATACCTCTCCGACCGACTGAGCGCCCGCACG
* * * *
29490619 CCCGTTTCGTGGGTTGGCTTAGGCATAGG
130 CCCATTTCATGGGTTGACTTAGGCATACG
* ** * * *
29490648 GAGTTCATT-CCATGTCTAAGCCCTAG-CCGGA-CAGAGGGTTGTGGCAGT-GAGACCGGCAGCA
1 TAGTTCATTCCCA-GTCTAAG-ATTAGACCGAATC-GAGGGTTGTGGCAGTAG-GATCGACAGCA
* ** * ** * *
29490709 CGCAGAGGGGGACCAGGCCGGTCCCTGGCTTGCGCATTATGCCTCTTTGGCCGGCTGAGCGCCCG
62 CGAAG-GGGGGACCAGGCCAATCCCTGGCTTGCGCATTATACCTCTCCGACCGACTGAGCGCCCG
*
29490774 CACGCTCATTTCATGGGTTGACTTAGGCATACG
126 CACGCCCATTTCATGGGTTGACTTAGGCATACG
* *
29490807 TAGTTCATTCCCAGTCTAAGATTGGACCGAATCGAGGGTTGTGGCAGTAGGATCAACAGCACGAA
1 TAGTTCATTCCCAGTCTAAGATTAGACCGAATCGAGGGTTGTGGCAGTAGGATCGACAGCACGAA
29490872 GGGGGGAC
66 GGGGGGAC
29490880 TGAGGGTTCT
Statistics
Matches: 186, Mismatches: 36, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
157 6 0.03
158 49 0.26
159 126 0.68
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (158 bp):
TAGTTCATTCCCAGTCTAAGATTAGACCGAATCGAGGGTTGTGGCAGTAGGATCGACAGCACGAA
GGGGGGACCAGGCCAATCCCTGGCTTGCGCATTATACCTCTCCGACCGACTGAGCGCCCGCACGC
CCATTTCATGGGTTGACTTAGGCATACG
Found at i:29491520 original size:26 final size:26
Alignment explanation
Indices: 29491484--29491536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29491474 GTTGGCTTAG
* *
29491484 GCATACGAAGTTCGTTCCGCGTCTAA
1 GCATACGAAGTTCATTCCGAGTCTAA
*
29491510 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCGAGTCTAA
29491536 G
1 G
29491537 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCGAGTCTAA
Found at i:29491620 original size:11 final size:11
Alignment explanation
Indices: 29491606--29491638 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
29491596 ATCGGGGCAC
29491606 CATCGTCGGAG
1 CATCGTCGGAG
29491617 CATCGTCGGAG
1 CATCGTCGGAG
29491628 CATCGTCGGAG
1 CATCGTCGGAG
29491639 AGCTTAACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:29492250 original size:26 final size:27
Alignment explanation
Indices: 29492213--29492267 Score: 103
Period size: 26 Copynumber: 2.1 Consensus size: 27
29492203 TGTGGGTTGA
29492213 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
29492240 CTTA-GCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
29492266 CT
1 CT
29492268 ATGATCAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCCAGT
Found at i:29492723 original size:158 final size:155
Alignment explanation
Indices: 29492240--29492745 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 155
29492230 CATCCCCAGT
* * * * *
29492240 CTTA-GCATACGGAGTTCATCCCCA-GTCTATGATCAAACCGGACCGAGGGTCGCGGCAGCAGGA
1 CTTAGGCATACGGAGTTCAT-TCCATGTCTAAGATCAGACCGGACCGAGGGT-TCGG-AACAGGA
* * * * *
29492303 TTGACAGCATGCAGGGGGGACCGGGCCGATCCCCAACTTACGCATTCTGCCTCTTCGGCCGGCTG
63 TTGACAGCACGAAGGGGGGACCGGGCCGAT-CCCGACTTGCGCATTCTGCCTCTTCGACCGGCTG
*
29492368 AGCGCCCGCATAATCGTTTCGTGGGTTGG
127 AGCGCCCGCACAATCGTTTCGTGGGTTGG
* *** *
29492397 CTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCTAG-CCGGATCGAGGGTT-GTG-ACAGTGA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTCG-GAACAG-GA
* * **
29492459 GATCAGCAGCAC-ACAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTAGGCCTCTTCGACCG
63 -TTGA-CAGCACGA-AG-GGGGGACCGGGCCGATCCC-GACTTGCGCATTCTGCCTCTTCGACCG
* * * * * *
29492523 GCTCAGCACCCGCACATTTGTTTCGTGTGTTGA
123 GCTGAGCGCCCGCACAATCGTTTCGTGGGTTGG
* *
29492556 CTTATGCATACGGAATTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGGAAACAGGA
1 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTT-CGG-AACAGGA
* * * * *
29492620 TTGACAGCACGAAGGGGGGATCGGGCCCATCCTCGGCTTGCACATTCTACCTC-TCTGACCGGCT
63 TTGACAGCACGAAGGGGGGACCGGGCCGATCC-CGACTTGCGCATTCTGCCTCTTC-GACCGGCT
**
29492684 GAGCGCCCGCACGCTCGTTTCGTGGGTTGG
126 GAGCGCCCGCACAATCGTTTCGTGGGTTGG
29492714 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
29492746 CATACAGAGT
Statistics
Matches: 278, Mismatches: 51, Indels: 39
0.76 0.14 0.11
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 15 0.05
158 131 0.47
159 112 0.40
160 7 0.03
161 3 0.01
162 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTCGGAACAGGATTG
ACAGCACGAAGGGGGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
CCCGCACAATCGTTTCGTGGGTTGG
Found at i:29492755 original size:26 final size:26
Alignment explanation
Indices: 29492719--29492771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29492709 GTTGGCTTAG
*
29492719 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
29492745 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
29492771 G
1 G
29492772 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:29493481 original size:26 final size:26
Alignment explanation
Indices: 29493442--29493494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29493432 GTTGACTTAG
29493442 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* **
29493468 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
29493494 G
1 G
29493495 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:29494007 original size:183 final size:184
Alignment explanation
Indices: 29493626--29494025 Score: 448
Period size: 183 Copynumber: 2.2 Consensus size: 184
29493616 GCCCTAGCTA
** * * *
29493626 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGGCTTGC
1 GACCGAGGGTTACGGTAGCAGGACCGACAGCACGCAGA-GGGGACCAGGCTGATCCCCGGCTTAC
* * * *
29493691 GCATTATGCCTCTCCTATCGGCTCAACCCCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACG
65 GCATTATGCCTCTCCGACCGACTCAACCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* *
29493756 GAGTTCATTACCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAAACTG
130 GAGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCCAAGATCAAACTG
* * * * * *
29493811 GGCTGAAGGTTACGGTAGCAGGATCGACAGCACGCAGA-GGGA-CTGGTCTGATCCTCGGCTTAC
1 GACCGAGGGTTACGGTAGCAGGACCGACAGCACGCAGAGGGGACCAGG-CTGATCCCCGGCTTAC
* * *** * * * *
29493874 GCATTCTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACT
65 GCATTATGCCTCTCCGACCGACTCAACCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * **
29493939 GAGTTCATT-CCATGTCTAAGCGTACGGAGTTCATTCCCAGTCCAAGATCGGA-TCG
130 GAGTTCATTACCA-GTCTAAGCATACGAAGTTCATTCCCAGTCCAAGATCAAACT-G
* *
29493994 GACCGAGGGTTACGGTAGCAGGGCCAACAGCA
1 GACCGAGGGTTACGGTAGCAGGACCGACAGCA
29494026 GGATCAGTAG
Statistics
Matches: 176, Mismatches: 36, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
182 7 0.04
183 139 0.79
185 30 0.17
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
GACCGAGGGTTACGGTAGCAGGACCGACAGCACGCAGAGGGGACCAGGCTGATCCCCGGCTTACG
CATTATGCCTCTCCGACCGACTCAACCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCCAAGATCAAACTG
Found at i:29494331 original size:26 final size:26
Alignment explanation
Indices: 29494295--29494345 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29494285 TGACTTAGGC
*
29494295 ATACGGAGTTCA-TCCCTAGTCTAAGT
1 ATACAGAGTTCATTCCC-AGTCTAAGT
29494321 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
29494346 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:29496095 original size:26 final size:26
Alignment explanation
Indices: 29496046--29496098 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29496036 GTTGCCTTAG
**
29496046 GCATACGGAGTTCATACCTTGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
29496072 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
29496098 G
1 G
29496099 AACGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:29497617 original size:158 final size:157
Alignment explanation
Indices: 29497320--29498027 Score: 549
Period size: 158 Copynumber: 4.5 Consensus size: 157
29497310 TTGAGCATCT
* *
29497320 GCACGCTCGTTTCATGGGTTGACTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCCCTAGTCGG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCGAGCCGG
* * * * * * * *
29497384 ACTGAGGGTTGTGGCAGCGGGA-CTGACAGCATGCAGAGGGGGACCAGGCCGATCCTCGGCTTGC
65 ACCGAGGGTTGCGGCAACAGGATC-GACAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGC
* *
29497448 GTA-TTAGCCTCTCCAACCGGCTCAATGCCC
128 GCATTTTGCCTCTCCAACCGGCTCAA-GCCC
* * * ** *
29497478 GCACGTTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCC-TAGTCTAAGATCG-GATCG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCGAG-CCG
* **
29497541 GACTGAGGGTTGCGGCAATGGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCG
64 GACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCG
* * * * *
29497606 CATTTTCCCTCTTCGATCGGCT-GAGCACCC
129 CATTTTGCCTCTCCAACCGGCTCAAG--CCC
* * * * * *
29497636 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGATCATTCCATGTCTAAGCCCTAGCCAGA
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAGCCGGA
* * ** * * * * *
29497701 CCGAGGGTTGTGGCAACAGGACCGACAGCGTGCACTGAGGGATCGAGTCGATCCCCGGCTTACGC
66 CCGAGGGTTGCGGCAACAGGATCGACAGCACGCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGC
* *
29497766 ATTATGCCTCTCCAACCGACTC-AGCACC
130 ATTTTGCCTCTCCAACCGGCTCAAGC-CC
* * **
29497794 TGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCTCA-ATCTAAGATCG-GACC
1 -GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCGAG-CC
* * * ** * * * * *
29497857 GGACCGAGGGTTACAGTAGTAGGATCGACAGTACACAGGGGGGATCGGGCTGATTCACGGCTTGC
63 GGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGC
* * * * * *
29497922 GTATTCTAGCACT-T-CGATCGACT-TAGCACCC
128 GCATT-TTGC-CTCTCCAACCGGCTCAAG--CCC
* * * * * *
29497953 GCAAGCTCGTTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGA
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAGCCGGA
*
29498018 CCGAAGGTTG
66 CCGAGGGTTG
29498028 TGGTAGCAGG
Statistics
Matches: 434, Mismatches: 94, Indels: 44
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 32 0.07
158 270 0.62
159 126 0.29
160 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAGCCGGA
CCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCA
TTTTGCCTCTCCAACCGGCTCAAGCCC
Found at i:29497814 original size:159 final size:158
Alignment explanation
Indices: 29497313--29497838 Score: 571
Period size: 158 Copynumber: 3.3 Consensus size: 158
29497303 TGGTCGGTTG
*
29497313 AGCATCTGCACGCTCGTTTCATGGGTTGACTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCCC
1 AGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCC
* * * *
29497377 TAGTCGGACTGAGGGTTGTGGCAGCGGGACTGACAGCATGCAGAGGGGGA-CCAGGCCGATCCTC
65 TAGTCGGACTGAGGGTTGTGGCAACGGGACCGACAGCATGCA-AGGGGGATCGA-GCCGATCCCC
*
29497441 GGCTTGCGTATTA-GCCTCTCCAACCGGCTC
128 GGCTTGCGCATTATGCCTCTCCAACCGGCTC
* * * *
29497471 AATGC-CC-GCACGTTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCC-TAGTCTAAGA
1 -A-GCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
* * * * * * * *
29497533 TC-GGATCGGACTGAGGGTTGCGGCAATGGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCC
63 CCTAG-TCGGACTGAGGGTTGTGGCAACGGGACCGACAGCATGCAAGGGGGATCGAGCCGATCCC
* * * * * *
29497597 CGGCTTGCGCATTTTCCCTCTTCGATCGGCTG
127 CGGCTTGCGCATTATGCCTCTCCAACCGGCTC
* * * * *
29497629 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGATCATTCCATGTCTAAGCCCT
1 AGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCT
* * * * * * * *
29497694 AGCCAGACCGAGGGTTGTGGCAACAGGACCGACAGCGTGCACTGAGGGATCGAGTCGATCCCCGG
66 AGTCGGACTGAGGGTTGTGGCAACGGGACCGACAGCATGCA-AGGGGGATCGAGCCGATCCCCGG
* *
29497759 CTTACGCATTATGCCTCTCCAACCGACTC
130 CTTGCGCATTATGCCTCTCCAACCGGCTC
*
29497788 AGCACCTGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTC
1 AGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
29497839 TCAATCTAAG
Statistics
Matches: 297, Mismatches: 59, Indels: 22
0.79 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 31 0.10
158 171 0.58
159 91 0.31
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCT
AGTCGGACTGAGGGTTGTGGCAACGGGACCGACAGCATGCAAGGGGGATCGAGCCGATCCCCGGC
TTGCGCATTATGCCTCTCCAACCGGCTC
Found at i:29497898 original size:317 final size:316
Alignment explanation
Indices: 29497306--29498047 Score: 909
Period size: 317 Copynumber: 2.3 Consensus size: 316
29497296 GCCTCTCTGG
* * * * * * *
29497306 TCGGTTGAGCATCTGCACGCTCGTTTCATGGGTTGACTTAGGCATAGGTAGTTCATTCCATGTCT
1 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
* * * * * * *
29497371 AAGCCCTAGTCGGACTGAGGGTTGTGGCAGCGGGACTGACAGCATGCAGAGGGGGACCAGGCCGA
66 AAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGTGCACAGAGGGACCAGGCCGA
* * * * * *
29497436 TCCTCGGCTTGCGTATTAGCCTCTCCAACCGGCTCAATGCCCGCACGTTCGTTTCGTGGGTTGAC
131 TCCCCGGCTTACGCATTAGCCTCTCCAACCGACTCAATGCCCGCACGCTCGTTTCATGGGTTGAC
* * * * * * *
29497501 TTAGTCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAATGGGATC
196 TTAGGCATACGGAGTTCATTCCTAATCTAAGATCGGACCGGACCGAGGGTTACAGCAATAGGATC
* * * * *
29497566 GACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTCCCTCTTCGA
261 GACAGCACACAGGGGGGATCGGGCCGATCCACGGCTTGCGCATTCTACCACTTCGA
*
29497622 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGATCATTCCATGTC
1 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTC
* * * * *
29497686 TAAGCCCTAGCCAGACCGAGGGTTGTGGCAACAGGACCGACAGCGTGCACTGAGGGATC-GAGTC
65 TAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGTGCACAGAGGGACCAG-GCC
*
29497750 GATCCCCGGCTTACGCATTATGCCTCTCCAACCGACTC-A-GCACCTGCACGCTCGTTTTATGGG
129 GATCCCCGGCTTACGCATTA-GCCTCTCCAACCGACTCAATGC-CC-GCACGCTCGTTTCATGGG
* *
29497813 TTGACTTAGGCATACGGAGTTCATT-CTCAATCTAAGATCGGACCGGACCGAGGGTTACAGTAGT
191 TTGACTTAGGCATACGGAGTTCATTCCT-AATCTAAGATCGGACCGGACCGAGGGTTACAGCAAT
* * * * *
29497877 AGGATCGACAGTACACAGGGGGGATCGGGCTGATTCACGGCTTGCGTATTCTAGCACTTCGA
255 AGGATCGACAGCACACAGGGGGGATCGGGCCGATCCACGGCTTGCGCATTCTACCACTTCGA
* * * *
29497939 TCGACTTAGCACCCGCAAGCTCGTTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCATGTCT
1 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
* * * *
29498004 AAGCCCCAGCCGGACCGAAGGTTGTGGTAGCAGGACCGATAGCG
66 AAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCG
29498048 GGATAGGTAA
Statistics
Matches: 362, Mismatches: 57, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
315 3 0.01
316 127 0.35
317 231 0.64
318 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (316 bp):
TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
AAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGTGCACAGAGGGACCAGGCCGA
TCCCCGGCTTACGCATTAGCCTCTCCAACCGACTCAATGCCCGCACGCTCGTTTCATGGGTTGAC
TTAGGCATACGGAGTTCATTCCTAATCTAAGATCGGACCGGACCGAGGGTTACAGCAATAGGATC
GACAGCACACAGGGGGGATCGGGCCGATCCACGGCTTGCGCATTCTACCACTTCGA
Found at i:29498194 original size:26 final size:26
Alignment explanation
Indices: 29498164--29498216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29498154 GTTGACTTAG
*
29498164 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
29498190 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29498216 G
1 G
29498217 ATCAGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29498495 original size:159 final size:159
Alignment explanation
Indices: 29498190--29498693 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 159
29498180 CCCAGTCTAA
* * ** * ** ****
29498190 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCTGACCGAGGGTTGCGACAGCAGGATTGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACAGGACCGAGGGTTGTGGTAGCAGGACCAA
* * * * * *
29498253 CAGCATGCAGGGGGGACCGGGTCAATCCCTGGCTTGCACATTCTACTTCTTCGGTCGGCTGAGCG
65 CAGCATGCAGGGGGGATCGGGTCAATCCCTGGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCG
* *
29498318 CCCGCACGTTTGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
29498348 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGTATCAGGACCAAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGGACCGAGGGTTGTGGTAGCAGGACCAAC
* * *
29498412 AGCATGCAGAGGGGGATCGGGTCAATCCCTGACTTGCGCATTATGCCTCTTTGGCCGGCTCAGCG
66 AGCATGCAG-GGGGGATCGGGTCAATCCCTGGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCG
* * *
29498477 CCCGCACGCTCGTTTCATGGGTTGACATAT
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
29498507 GCATACGGAGTTCATTTTCA-GTCTAAG-ATCGGACAGGACCGAGGGTTGTGGTAGCAGGATCGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGCACCAGACAGGACCGAGGGTTGTGGTAGCAGGACCAA
* * * * * * **
29498570 CAGCACGCATGGGGGATCGAG-CTGATCCTTGGCTTGCGCATTCTGCCTCTCTGGCCGATTGAGC
65 CAGCATGCAGGGGGGATCGGGTC-AATCCCTGGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGC
* * * * *
29498634 ACCCGTACGCTCATTTCGTAGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
29498665 GCATACGGAGTTGATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
29498694 TACAGAGTTC
Statistics
Matches: 280, Mismatches: 58, Indels: 15
0.79 0.16 0.04
Matches are distributed among these distances:
157 8 0.03
158 139 0.50
159 129 0.46
160 4 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGGACCGAGGGTTGTGGTAGCAGGACCAAC
AGCATGCAGGGGGGATCGGGTCAATCCCTGGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:29498694 original size:26 final size:26
Alignment explanation
Indices: 29498665--29498717 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29498655 GTTGGCTTAG
* *
29498665 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29498691 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29498717 G
1 G
29498718 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29505784 original size:159 final size:157
Alignment explanation
Indices: 29505277--29505793 Score: 450
Period size: 159 Copynumber: 3.3 Consensus size: 157
29505267 CGGCTGAGCT
* * * * * * * *
29505277 GGACCGAGGGTTGTGGCAGCGGGATCGGCAACATGCAGAAGGGG-ACTAGGCCAATCCCTAGCTT
1 GGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG--GGGGAAC-AGGCCGATCCCCAGCTT
* * * *
29505341 GCGCATTATGCCTCTCCGACCGGCTCAGTGCTCACACACTCGTTTCATGGGTTGACTTAAGCATA
63 GCGCATTATGCCTCTCCGACTGGCTCAGTGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATA
* *
29505406 CAGAGTTCATTCCCAGTCTAAGATCGAACT
128 CGGAGTTCATTCCCAGTCTAAGATCGAACC
** *
29505436 GGACTGAGGGTTACGGTAGCAGGATCGACAACACGCAGGGGGAACAGGCCGATCCCCAGCTTGCG
1 GGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGAACAGGCCGATCCCCAGCTTGCG
* * * * ** * * *
29505501 CATTCTGCCTCTCCG-GTCGG-TCGAGCGCCCGCATGCCCGTTTGGTGGGTTGACTTAGGCAGA-
66 CATTATGCCTCTCCGACT-GGCTC-AGTGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATAC
* ** * *
29505563 GACAGTTCATT-CCAGGTCTAAGCCCCAGCC
129 G-GAGTTCATTCCCA-GTCTAAGATCGAACC
* * * * * ** * * *
29505593 GGATTGAGGGTTGTGGCAGCGGGTTCGGCAGCACGCAGAGGAGGATTAGGCTGATCCTCGGCTTG
1 GGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG-GG-GGAACAGGCCGATCCCCAGCTTG
* * ** *
29505658 CACATTATGCCTCTCCGACTGGCTCAGTACCCTTACACTCTTTTCGTGGGTTGACTTAGGCATAC
64 CGCATTATGCCTCTCCGACTGGCTCAGTGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATAC
* *
29505723 GGAGTTCATTCCCAGTGTAAGATCGGACC
129 GGAGTTCATTCCCAGTCTAAGATCGAACC
* * * *
29505752 GAACCGAGGGTTGTGGTAGCAGGATCAACAGCACGTAGGGGG
1 GGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGG
29505794 TGATCGGGTC
Statistics
Matches: 276, Mismatches: 71, Indels: 24
0.74 0.19 0.06
Matches are distributed among these distances:
156 5 0.02
157 117 0.42
158 6 0.02
159 141 0.51
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (157 bp):
GGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGAACAGGCCGATCCCCAGCTTGCG
CATTATGCCTCTCCGACTGGCTCAGTGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGAACC
Found at i:29505926 original size:26 final size:26
Alignment explanation
Indices: 29505872--29505927 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
29505862 TGGGTTGGCT
*
29505872 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGCC
*
29505898 TAAGCATATGGAGTTCATTCCCA-GCC
1 TAAGCATACGGAGTTCATT-CCATGCC
29505924 TAAG
1 TAAG
29505928 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGCC
Found at i:29506110 original size:196 final size:185
Alignment explanation
Indices: 29505717--29506282 Score: 529
Period size: 184 Copynumber: 3.0 Consensus size: 185
29505707 GTTGACTTAG
* ** * * * *
29505717 GCATACGGAGTTCATTCCCAGTGTAAGATCGGAC-CGAACCGAGGGTTGTGGT---AGCAGGATC
1 GCATACAGAGTTCATTCCCAGCCTAAGATCAGACTAG-ACCAAGGGTTGCGGTAGCAGCAGGATC
* * * *
29505778 AACAGCACGTAGGGGGTGATCGGGTCGGTCCC-AGCTTATGCATTCTCTCTCTTCGATCGGTTGA
65 GACAGCACGTAGGGGG-GACCGGGTCGGTCCCGA-CTTATGCATTCTC-CTCTCCGGTCGGTTGA
* * * * * *
29505842 GCACCCGTAAGCTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAA
127 GCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATCCCATGTCTAA
** * **
29505901 GCATATGGAGTTCATTCCCAGCCTAAGATCAGACTGGACTGAGGGTTGCGACAGTAGGACCAGCA
1 GCATACAGAGTTCATTCCCAGCCTAAGATCAGACTAGACCAAGGGTTGCG---GT------AGCA
* * * *
29505966 GCAGGATCGACAGCACATAGGGGGGACCGAGTCGATCACCGACTTGTGCATTCTACCTCTCCGGT
57 GCAGGATCGACAGCACGTAGGGGGGACCGGGTCGGTC-CCGACTTATGCATTCT-CCTCTCCGGT
* * * *
29506031 CGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAAAGAGTTCATCCCCA-GTCT
120 CGGTTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCAT-CCCATGTCT
29506095 AA
184 AA
* * *
29506097 GTATACAGAGTTCATTCCCAGTCTAAGATCAGATTAGACCAAGGGTTGCGGTAGCA--A-GATCG
1 GCATACAGAGTTCATTCCCAGCCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAGCAGGATCG
* * *
29506159 ACAGCACGTAGGGGGGACCGGGTCGGTCCCCGGCTTACGCATTCTGCCTCTCCAGTCGGTTGAGC
66 ACAGCACGTAGGGGGGACCGGGTCGGT-CCCGACTTATGCATTCT-CCTCTCCGGTCGGTTGAGC
* * * * * *
29506224 GCCCGCACGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAA
129 GCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATCCCATGTCTAA
29506281 GC
1 GC
29506283 CCCAGCTGGA
Statistics
Matches: 312, Mismatches: 51, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
183 3 0.01
184 146 0.47
185 3 0.01
187 6 0.02
193 2 0.01
195 10 0.03
196 137 0.44
197 5 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGCCTAAGATCAGACTAGACCAAGGGTTGCGGTAGCAGCAGGATCG
ACAGCACGTAGGGGGGACCGGGTCGGTCCCGACTTATGCATTCTCCTCTCCGGTCGGTTGAGCGC
CCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATCCCATGTCTAA
Found at i:29507167 original size:26 final size:26
Alignment explanation
Indices: 29507131--29507184 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
29507121 TGGGTTGACT
29507131 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
29507157 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
29507183 TA
1 TA
29507185 AGATTGGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:29507672 original size:26 final size:26
Alignment explanation
Indices: 29507622--29507674 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29507612 GTTGGCTTAG
* *
29507622 GCATACGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATATCTAA
29507648 GCATAAGGAGTTCATTCCCA-ATCTAA
1 GCATAAGGAGTTCATT-CCATATCTAA
29507674 G
1 G
29507675 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATATCTAA
Found at i:29507926 original size:196 final size:197
Alignment explanation
Indices: 29507523--29508042 Score: 600
Period size: 196 Copynumber: 2.6 Consensus size: 197
29507513 GGCAGCAGAT
* * * * * * * * * *
29507523 TCGACAGCACGCA-GGAGGGATCGGGTCGATCCCCGACTTGTGTATTCTGCCTCTCCAGTCGATT
1 TCGACAGCACGTAGGGAGGGACCGGGCCAATACCTGGCTTGTGCATTCTGCCTCTCCGGTCGGTT
* * *
29507587 GAGCGCCCGTATGTTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
66 GAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC
* * * *
29507652 AAGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTACGGCAGCAGGACTAGCAGTAG
131 AAGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTACGACAGCAAGACCAGCAGAAG
29507717 GA
196 GA
* * * *
29507719 TCGATAGCACGTAGGG-GGGACTGGGCCAAT-CCTCGGCTTGTGGATTCTGCCTCTCCGGTTGGT
1 TCGACAGCACGTAGGGAGGGACCGGGCCAATACCT-GGCTTGTGCATTCTGCCTCTCCGGTCGGT
* *
29507782 TGAGTGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAAGCA
65 TGAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * * *
29507847 CATGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGA-CTGAGGGTTACGATAGCAAGACCAGCAG
130 CAAGGAGTTCATTCCCAATCTAAGATCAGATCA-GATC-GAGGGTTACGACAGCAAGACCAGCAG
29507910 AAGGA
193 AAGGA
* * * *** * **
29507915 TTGGCAGCACGTAGGGATGGACCGGGTTGATACCTGGTTTGTGCATTCTGCCTCTCCGCCCGGTT
1 TCGACAGCACGTAGGGAGGGACCGGGCCAATACCTGGCTTGTGCATTCTGCCTCTCCGGTCGGTT
** * * * *
29507980 GAGCATCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGC
66 GAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29508043 CCCAGTCGGA
Statistics
Matches: 272, Mismatches: 46, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
195 5 0.02
196 173 0.64
197 91 0.33
198 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (197 bp):
TCGACAGCACGTAGGGAGGGACCGGGCCAATACCTGGCTTGTGCATTCTGCCTCTCCGGTCGGTT
GAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC
AAGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTACGACAGCAAGACCAGCAGAAG
GA
Found at i:29508222 original size:26 final size:26
Alignment explanation
Indices: 29508186--29508238 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29508176 TTTGACTTAG
*
29508186 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29508212 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29508238 G
1 G
29508239 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29508729 original size:158 final size:157
Alignment explanation
Indices: 29508212--29509030 Score: 591
Period size: 159 Copynumber: 5.2 Consensus size: 157
29508202 CCCAGTCTAA
** ** * * * ** *
29508212 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCTAACCGGATCGAGGGTTGTGGTAGCAGGATCAAC
* * * * * * * * *
29508276 AGCATGTA-GGGGGACCGGGCCGATCC-CTGACTTGTGCATTCTGCCTCTCGGGCTAGCTGAGCG
65 AGCACGCAGGGGGGATCGGGTCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGTC-GGCTGAGCG
*
29508339 CCCGCACGC-CTGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTC-ATTTCATGGGTTGGCTTAG
* * * * * * **
29508369 GCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCGGA-CTGAGGGTTGTAGTAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAACCGGATC-GAGGGTTGTGGTAGCAGGATC-AA
* * * * * * * *
29508432 CAGCACACAGAGGTGGATCGGGCCGATCC-CTGACTTGTGCATTATGCCTCTTCGATCGGCTCAG
64 CAGCACGCAG-GGGGGATCGGGTCGATCCTC-GGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAG
* * * * **
29508496 CGCTCGAACGCTAATTTTATGGGTTTACTTAG
126 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * *
29508528 GCATACGAAGTTCATTCCCA-GTCTAAG-AATGAACCGGACCGAGGGTTGTGGTAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCT-AACCGGATCGAGGGTTGTGGTAGCAGGATCAA
* * * * *
29508591 CAGCACGCAGGGGGGGTCCGGGTCGATCCACGGCTTGCACATTCTGCCTCTCCGCCAGCTGAGCG
64 CAGCACGCAGGGGGGAT-CGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCG
*
29508656 CCCGCACGCCCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * *
29508686 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATCGAGGTTTGTGGTAGCGGGACCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAACCGGATCGAGGGTTGTGGTAGCAGGATCAACA
* * * * * *
29508751 GCACGCAGAGGGGGA-CTGGGTTGATCCTCGGCTTGTGCATTATGCCTCTTCGATCGGCTCAGCA
66 GCACGCAG-GGGGGATC-GGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCG
* ** *
29508815 CCTGTGCGCTCATTTCATGGGATGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
** * * * * ** * * *
29508845 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGAATTGAAGGTTACGGCAGTAAGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAACCGGATCGAGGGTTGTGGTAGCAGGATCAAC
* * * * *
29508909 ATCACGCAGGGGGGATCGAG-CTGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAGCG
65 AGCACGCAGGGGGGATCGGGTC-GATCCTCGGCTTGCGCATTCTGCCTC-TCCGTCGGCTGAGCG
* * *
29508973 CCCGTATGCTCATTTTATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
29509003 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
29509031 ATACAGAGTT
Statistics
Matches: 514, Mismatches: 125, Indels: 45
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.00
157 55 0.11
158 208 0.40
159 239 0.46
160 10 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTAACCGGATCGAGGGTTGTGGTAGCAGGATCAACA
GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:29508788 original size:317 final size:315
Alignment explanation
Indices: 29508212--29509030 Score: 925
Period size: 317 Copynumber: 2.6 Consensus size: 315
29508202 CCCAGTCTAA
* * * * * *
29508212 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * *
29508277 GCATGTA--GGGGGACCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCGGGCTAGCTGAGCGC
66 GCACGCAGGGGGGGTCCGGG-CGATCCC-GGCTTGCGCATTCTGCCTCTC-GGCCAGCTGAGCGC
** *
29508340 CCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCG
128 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
*** *
29508405 GACTGAGGGTTGTAGTAGCGGGACTGGCAGCACACAGAGGTGGATCGGGCCGATCCCTGACTTGT
193 GACTGAGGGTTGTAGTAGCGGGACCAACAGCACACAGAGGGGGATCGGGCCGATCCCTGACTTGT
* * * *
29508470 GCATTATGCCTCTTCGATCGGCTCAGC-GCTCGAACGCTAATTTTATGGGTTTACTTAG
258 GCATTATGCCTCTTCGATCGGCTCAGCACCT-GAACGCTAATTTCATGGGATGACTTAG
* * * *
29508528 GCATACGAAGTTCATTCCCAGTCTAAGAAT-GAACCGGACCGAGGGTTGTGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGAC
* *
29508592 AGCACGCAGGGGGGGTCCGGGTCGATCCACGGCTTGCACATTCTGCCTCTCCGCCAGCTGAGCGC
65 AGCACGCAGGGGGGGTCCGGG-CGATCC-CGGCTTGCGCATTCTGCCTCTCGGCCAGCTGAGCGC
* *
29508657 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCG
128 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * ** *
29508722 GA-TCGAGGTTTGTGGTAGCGGGACCAACAGCACGCAGAGGGGGA-CTGGGTTGAT-CCTCGGCT
193 GACT-GAGGGTTGTAGTAGCGGGACCAACAGCACACAGAGGGGGATC-GGGCCGATCCCT-GACT
** * *
29508784 TGTGCATTATGCCTCTTCGATCGGCTCAGCACCTGTGCGCTCATTTCATGGGATGGCTTAG
255 TGTGCATTATGCCTCTTCGATCGGCTCAGCACCTGAACGCTAATTTCATGGGATGACTTAG
* * * * * * *
29508845 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAATTGAAGGTTACGGCAGTAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * * *
29508910 TCACGCAGGGGGGAT-CGAGCTGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAGCGC
66 GCACGCAGGGGGGGTCCGGGC-GATCC-CGGCTTGCGCATTCTGCCTC-TCGGCCAGCTGAGCGC
* * * * *
29508974 CCGTATGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
29509031 ATACAGAGTT
Statistics
Matches: 424, Mismatches: 68, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
315 1 0.00
316 90 0.21
317 296 0.70
318 36 0.08
319 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGGTCCGGGCGATCCCGGCTTGCGCATTCTGCCTCTCGGCCAGCTGAGCGCCCG
CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
TGAGGGTTGTAGTAGCGGGACCAACAGCACACAGAGGGGGATCGGGCCGATCCCTGACTTGTGCA
TTATGCCTCTTCGATCGGCTCAGCACCTGAACGCTAATTTCATGGGATGACTTAG
Found at i:29509039 original size:26 final size:26
Alignment explanation
Indices: 29509003--29509055 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29508993 GTTGGCTTAG
*
29509003 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29509029 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29509055 G
1 G
29509056 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29509412 original size:26 final size:26
Alignment explanation
Indices: 29509383--29509435 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29509373 GTTGACTTAG
*
29509383 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
29509409 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29509435 G
1 G
29509436 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29509764 original size:26 final size:26
Alignment explanation
Indices: 29509726--29509778 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29509716 GTTGGCTTAG
* *
29509726 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29509752 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29509778 G
1 G
29509779 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29515285 original size:159 final size:159
Alignment explanation
Indices: 29514907--29515300 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 159
29514897 CAAAGTCTGT
* * * * *
29514907 CTCTCTGGCCAACTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATT
1 CTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* * * ** * * *
29514972 CCATGTCTAAGCCCCAACCGGACTGGGGGTTGTGGTAGCAGGACCGACAGCACGTAGAGGGGGAT
66 CCATGTCTAAGCACCAACCGGACCGAGGGTTGCCGCAGCAGGACCGACAGCACGCAGAGGGGGAC
*
29515037 CGAGCCGATCCCCGGCTTGCGCATTATGC
131 CGAGCCGATCCCCGGCTTGCGCATTATAC
** * * * * * * *
29515066 CTCTCCGGTTGACTCAGCGCCCGCACGTTCATTTCATGGGTTGACTTAAGCAGACGGAGTTCATT
1 CTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
29515131 CCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCCGCAGCAGGATCGATAGCACGCATG-GGGG
66 -CCATGTCTAAGCACCA-ACCGGACCGAGGGTTGCCGCAGCAGGACCGACAGCACGCA-GAGGGG
* *
29515193 GACC-AGACCGGTCCCCGGCTTGCGCATTCTAC
128 GACCGAG-CCGATCCCCGGCTTGCGCATTATAC
** * * * **
29515225 CTCTTTGGCCGGCTGAGCGCCCCCATGCTCGTTTCATGGGTTGGCTTAGGGATATAGAGTTCATT
1 CTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
29515290 CCATGTCTAAG
66 CCATGTCTAAG
29515301 GATATGAAGT
Statistics
Matches: 185, Mismatches: 45, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
158 7 0.04
159 174 0.94
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCACCAACCGGACCGAGGGTTGCCGCAGCAGGACCGACAGCACGCAGAGGGGGAC
CGAGCCGATCCCCGGCTTGCGCATTATAC
Found at i:29515304 original size:26 final size:26
Alignment explanation
Indices: 29515274--29515326 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29515264 GTTGGCTTAG
29515274 GGATAT-AGAGTTCATT-CCATGTCTAA
1 GGATATGA-AGTTCATTCCCA-GTCTAA
29515300 GGATATGAAGTTCATTCCCAGTCTAA
1 GGATATGAAGTTCATTCCCAGTCTAA
29515326 G
1 G
29515327 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
GGATATGAAGTTCATTCCCAGTCTAA
Found at i:29515691 original size:26 final size:26
Alignment explanation
Indices: 29515654--29515706 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29515644 GTTGACTTAG
29515654 GCATACATAGTTCATCCCCAGTCTAA
1 GCATACATAGTTCATCCCCAGTCTAA
* *
29515680 GCATACGA-AGTTCATTCTCAGTCTAA
1 GCATAC-ATAGTTCATCCCCAGTCTAA
29515706 G
1 G
29515707 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACATAGTTCATCCCCAGTCTAA
Found at i:29516184 original size:26 final size:26
Alignment explanation
Indices: 29516154--29516206 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29516144 GTTGGCTTAG
29516154 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29516180 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29516206 G
1 G
29516207 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29516886 original size:26 final size:26
Alignment explanation
Indices: 29516850--29516900 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29516840 CTGGCTTAGG
*
29516850 CATATGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
29516876 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
29516901 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:29518311 original size:26 final size:26
Alignment explanation
Indices: 29518280--29518332 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29518270 GTTGGCTTAC
*
29518280 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
29518306 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29518332 G
1 G
29518333 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:29519375 original size:26 final size:26
Alignment explanation
Indices: 29519332--29519382 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29519322 TGACTTATGC
* *
29519332 ATACGCAGTTTATCCCCAGTCTAAGG
1 ATACGAAGTTCATCCCCAGTCTAAGG
*
29519358 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
29519383 ATCGGAGCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGG
Found at i:29519830 original size:158 final size:158
Alignment explanation
Indices: 29519358--29520067 Score: 554
Period size: 158 Copynumber: 4.4 Consensus size: 158
29519348 CAGTCTAAGG
* * * * * ** * * *
29519358 ATACGAAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGGTTATGATAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGACAGC
* * * * * *
29519423 ATGC--AGGGGGAGCCGGGCCAGT-CTCTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCGC
66 ACGCAGAGGGGGA-CCAGGCCAATCCTC-GACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGC
* * * *
29519485 CCGTACGCCCGTTTCATGGGTTGGCTTTGGC
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * ** * * * *
29519516 ATAGGGAATTCATT-CCATGTCTAAGCCCTAG-CCGGACTGAGGGTTGTGGTAGCAGGGCCGACA
1 ATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAAGACCGACA
*** ** * * * * * * * *
29519579 GCACGCAGAGGGGGATTGGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGACCGACTCAACAC
64 GCACGCAGAGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCGC
* *
29519644 CCGCACGCTCGTTTCGTAGGTTGACTTAGGC
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * *
29519675 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGTAAGATCTACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGACAGC
* *
29519740 ACGCA-AGGGGGACCAGGCCAATCCTCGACATGCGCATTCTGCCTCTCTAGTCGGCTGAGCGCCC
66 ACGCAGAGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTC-CGTCGGCTGAGCGCCC
* *
29519804 GCACGTTCGTTACGTGGGTTGGCTTAGGC
130 GCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
29519833 ATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGACCAGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGACC-G-A-C
** * * *
29519898 AGGATCGACAGCACGTAGGGGGGACCAGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTA
63 A-G--C-AC-GCA-G-A-GGGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGTC-G
* *
29519963 GCTAAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
119 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* ** * * * * *
29520003 ATACGAAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAAGCTTGTGGTAGCAGGACCGACA
1 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGACA
29520066 GC
64 GC
29520068 GGTATCGATA
Statistics
Matches: 435, Mismatches: 93, Indels: 42
0.76 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 171 0.39
159 109 0.25
160 14 0.03
161 2 0.00
162 1 0.00
164 2 0.00
165 2 0.00
166 4 0.01
167 2 0.00
168 1 0.00
169 6 0.01
170 115 0.26
171 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGACAGC
ACGCAGAGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:29520017 original size:170 final size:169
Alignment explanation
Indices: 29519730--29520176 Score: 472
Period size: 170 Copynumber: 2.6 Consensus size: 169
29519720 GTGGCAGTAA
* * * * * ** *
29519730 GATCTACAGCACGCAAGGGGGACCAGGCCAATCCTCGACATGCGCATTCTGCCTCTCTAG-TCGG
1 GATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCT-AG
* * * * *
29519794 CTGAGCGCCCGCACGTTCGTTACGTGGGTTGGCTTAGGCATATGGAGTTCATTCC-TAGTCTAAG
65 CTAAGCTCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT-GTCTAAG
* * *
29519858 -ATCAGACCGGACCGAGGGTTGTGGCAGCAAGACC-AGCAGCAG
129 CACCAG-CCGGACCGAAGCTTGTGGCAGCAAGACCGA-CAGC-G
* *
29519900 GATCGACAGCACGTAGGGGGGACCAGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTAGC
1 GATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTAGC
* *
29519965 TAAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCC
66 TAAGCTCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
* * *
29520030 CCAGCCGGACTGAAGCTTGTGGTAGCAGGACCGACAGCG
131 CCAGCCGGACCGAAGCTTGTGGCAGCAAGACCGACAGCG
* * * ** * * *
29520069 GTATCGATAGCACGCAGAGGGGGACCGGGCGGATCCCCGACTTATGCATTATGCCTCTCCGACCA
1 G-ATCGACAGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTA
* * * *
29520134 GCTAAG-TGCCCACACGTTCTTTTTGTGGGTTGACTTAGGCATA
64 GCTAAGCT-CCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATA
29520177 TGGAGTTAAT
Statistics
Matches: 233, Mismatches: 37, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
169 2 0.01
170 149 0.64
171 82 0.35
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (169 bp):
GATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTAGC
TAAGCTCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
CCAGCCGGACCGAAGCTTGTGGCAGCAAGACCGACAGCG
Found at i:29520725 original size:26 final size:26
Alignment explanation
Indices: 29520689--29520738 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29520679 ACTTATGCAG
29520689 TACGGAGTTCATTCCACA-TCTAAGCA
1 TACGGAGTTCATTCC-CAGTCTAAGCA
29520715 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
29520739 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:29521308 original size:317 final size:319
Alignment explanation
Indices: 29520712--29521539 Score: 947
Period size: 317 Copynumber: 2.6 Consensus size: 319
29520702 CCACATCTAA
* * ** * * * *
29520712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGGTTTCGGCAGCCTAGGATCG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGA-AGGTTGCGACAG-C-AGGATAG
* *** * * * * *
29520777 ATCAGCATGCA-AGGGGGATTGGGCCGAT-TCCAGCTTGCGCA-TCTGCGTCTCCGACCGGACTG
63 A-CAGCACGCAGAGGGGGACCAGGCCAATCCCCAACTTGCGCATTCTACCTCTCCGACC-GACTG
* *
29520839 AGCGCCCGCACGGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAATTCCATATCTAAGCC
126 AGCG-CCGCAC-GCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTC-ATTCCATGTCTAAGCC
* *
29520904 CCATGCCTGGACCGAGGCTTGTGGCAGCGGGACCGGCAGCATGCAGAGGGGGACTGGGCCGATCC
188 CCATGCCTGGACCGAGGCTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCC
* * * *
29520969 CTGGCTTACGCATTAAGCCTCTTCGGTCGGCTCAGCGTCCGCACACTCGTTTCGTGGGTTGACTT
253 CCGGCTTACGCATTAAGCCTCTTCGATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTT
29521034 AT
318 AT
* *
29521036 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GAATC-AAGGGTTGCGACAGCAGGATTAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAG-ACCGAA-GGTTGCGACAGCAGGA-TAG
* * * **
29521099 -CAGCACGCAG-GGGGGACCAGGTCGATCCCCAACTTGCGCATTCTACCTCTCCGATCGGTTGAG
63 ACAGCACGCAGAGGGGGACCAGGCCAATCCCCAACTTGCGCATTCTACCTCTCCGACCGACTGAG
* * *
29521162 TGTGCGCACGCCTATTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-
128 CG-CCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAT
* * * *
29521226 G-CTGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACCGGGCTGATCCCCGG
192 GCCTGGACCGAGGCTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGG
* * * * *
29521290 CTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGAGTTAT
257 CTTACGCATTAAGCCTCTTCGATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAT
* * * * *
29521353 GCGTACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTGTGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTGCGACAGCAGGATAGACA
** * * *
29521418 GCACGCAGAGGGGGACTGGGCCAATCCCCGATTTGCGCATTCTACCTCTTCGACCGACTGAGCGC
66 GCACGCAGAGGGGGACCAGGCCAATCCCCAACTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
* * *
29521483 CAGCACG-GTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
131 C-GCACGCCT-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
29521540 ATATGGAGTT
Statistics
Matches: 429, Mismatches: 63, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
316 2 0.00
317 171 0.40
318 97 0.23
319 18 0.04
320 54 0.13
321 26 0.06
322 15 0.03
323 11 0.03
324 35 0.08
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (319 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTGCGACAGCAGGATAGACA
GCACGCAGAGGGGGACCAGGCCAATCCCCAACTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
CGCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATGCCT
GGACCGAGGCTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTA
CGCATTAAGCCTCTTCGATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAT
Found at i:29521345 original size:159 final size:160
Alignment explanation
Indices: 29520712--29521539 Score: 624
Period size: 159 Copynumber: 5.2 Consensus size: 160
29520702 CCACATCTAA
* **
29520712 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGGTT-TCGGCAGCCTAGGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGACTGGACCGA-GGGTTGT-GGCAG-C-AGGA
* * * ** * * * * * * *
29520774 TCGATCAGCATGCA-AGGGGGATTGGGCCGATTCCAG-CTTGCGCA-TCTGCGTCTCCGACCGGA
61 CCG-GCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGATCGG-
* * *
29520836 CTGAGCGCCCGCACGGCCCATTTCGTGGGTTGGCTTAG
124 CTCAGCGCCCGCAC-GCTCGTTTCGTGGGTTGGCTTAG
* * * *
29520874 GCATAGGGAGTTCAATTCCATATCTAAGCCCCATGCCTGGACCGAGGCTTGTGGCAGCGGGACCG
1 GCATAGGGAGTTC-ATTCCATGTCTAAGCCCCA-GACTGGACCGAGGGTTGTGGCAGCAGGACCG
* * * * * *
29520939 GCAGCATGCAGAGGGGGACTGGGCCGATCCCTGGCTTACGCATTA-AGCCTCTTCGGTCGGCTCA
64 GCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATA-CCTCTTCGATCGGCTCA
* * * *
29521003 GCGTCCGCACACTCGTTTCGTGGGTTGACTTAT
128 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** * * * * * * ***
29521036 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAATCAAGGGTTGCGACAGCAGGATTAG
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGACTGGACCGAGGGTTGTGGCAGCAGGACCGG
* * * * * * * *
29521099 CAGCACGCAG-GGGGGACCAGGTCGATCCCCAACTTGCGCATTCTACCTCTCCGATCGGTTGAGT
65 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGATCGGCTCAGC
** * *
29521163 GTGCGCACGC-CTATTTCGTGGGTTGGTTTAG
130 GCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* *
29521194 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCGGGACCGGC
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACTGGACCGAGGGTTGTGGCAGCAGGACCGGC
* * * * *
29521258 AGCACGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTG
66 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGATCGGCTCAGCG
* *
29521323 CCCGCACGCTCGTTTCATGGGTTGAG-TTAT
131 CCCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* ** ** * ** * * * *
29521353 GCGTACAGAGTTCATTCCCA-GTCTAAG-ATCAAACCAGACCGAAGGTTGTGGCAGTAGGATCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGACTGGACCGAGGGTTGTGGCAGCAGGACCGG
* * * * * * *
29521416 CAGCACGCAGAGGGGGACTGGGCCAATCCCCGATTTGCGCATTCTACCTCTTCGACCGACTGAGC
65 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGATCGGCTCAGC
* * *
29521481 GCCAGCACGGTCGTTTCGTGGGTTAGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
29521512 GCATAGGGAGTTCATTCCATGTCTAAGC
1 GCATAGGGAGTTCATTCCATGTCTAAGC
29521540 ATATGGAGTT
Statistics
Matches: 516, Mismatches: 128, Indels: 46
0.75 0.19 0.07
Matches are distributed among these distances:
157 4 0.01
158 117 0.23
159 238 0.46
160 7 0.01
161 18 0.03
162 71 0.14
163 29 0.06
164 21 0.04
165 11 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACTGGACCGAGGGTTGTGGCAGCAGGACCGGC
AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGATCGGCTCAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29521563 original size:26 final size:26
Alignment explanation
Indices: 29521512--29521564 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29521502 GTTAGCTTAG
*
29521512 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATAGGGAGTTCATTCCATGCCTAA
*
29521538 GCATATGGAGTTCATTCCCA-GCCTAA
1 GCATAGGGAGTTCATT-CCATGCCTAA
29521564 G
1 G
29521565 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCATGCCTAA
Found at i:29522263 original size:26 final size:26
Alignment explanation
Indices: 29522233--29522285 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29522223 GTTGCCTTAG
29522233 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
29522259 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29522285 G
1 G
29522286 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29522747 original size:157 final size:156
Alignment explanation
Indices: 29522259--29522757 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 156
29522249 CCCAGTCTAA
* * *
29522259 GCATATGGAGTTCA-TTCCTAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTTCC-AGTCTAAGATCA-ACCGGACCGAGGGTTACGGTAGCAGGATCGAC
* * * * ***
29522323 GGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCATTCTACCTCT-TTGGTTGGCTGAGCG
64 AGCACGCAGGGGGGATCCGGCCGATCC-CAGCTTGCGCATTCTGCCTCTCCT-ACCGGCTGAGCG
* *
29522387 CCCGCACG-TCCATTTTGTGGGTTGCCTTAG
127 CCCGCACGCT-CATTTCGTGGGTTGACTTAG
* ** * ** * *
29522417 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCCAGCCGGAGTGAGGGTTATGGTA--AGGGACCGA
1 GCATACGGAGTTCATTTCCA-GTCTAAG-ATCAACCGGACCGAGGGTTACGGTAGCA-GGATCGA
* * * * * * *
29522479 CAGCACGTAGAGGGGGA-CCAGGTCGATCCCCGGCTTGCGTATTATGCCTCTCCGACCGGCTCAG
63 CAGCACGCAG-GGGGGATCC-GGCCGAT-CCCAGCTTGCGCATTCTGCCTCTCCTACCGGCTGAG
** *
29522543 CGCTGGCACGCTCATTTCGTGGGTTGACTTGG
125 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * * *
29522575 GCTTACGAAAG-TCATTTCGAGTCTAAGATCGAACCGAACCGAGGGTTGCGGTAGCATGATCGAT
1 GCATACG-GAGTTCATTTCCAGTCTAAGATC-AACCGGACCGAGGGTTACGGTAGCAGGATCGAC
* *
29522639 AGCACGCAGGGGGGATCCGGCCGATCCCAGCTTGCCCATTCTGCCTCTCCTACCGGCTGAGCACC
64 AGCACGCAGGGGGGATCCGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCTACCGGCTGAGCGCC
* * *
29522704 CGCACGCTCGTTTCATGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGACTTAG
29522732 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
29522758 ACATATGGAG
Statistics
Matches: 264, Mismatches: 61, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
156 7 0.03
157 87 0.33
158 143 0.54
159 26 0.10
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAACCGGACCGAGGGTTACGGTAGCAGGATCGACAG
CACGCAGGGGGGATCCGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCTACCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGACTTAG
Found at i:29522782 original size:26 final size:26
Alignment explanation
Indices: 29522733--29522783 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29522723 TTGGCTTAGG
*
29522733 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGTTCATTCCATATCTAAA
*
29522759 CATATGGAGTTCATTCCCA-ATCTAA
1 CATACGGAGTTCATT-CCATATCTAA
29522784 GATCAGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAA
Found at i:29523148 original size:26 final size:26
Alignment explanation
Indices: 29523112--29523163 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
29523102 GTTGACTTAG
29523112 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
29523138 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
29523164 ACAGTCGGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.