Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 316 of 402
Found at i:29523475 original size:159 final size:155
Alignment explanation
Indices: 29523138--29523504 Score: 380
Period size: 159 Copynumber: 2.3 Consensus size: 155
29523128 CCCAGTCTAA
* * * *
29523138 GCATACGAAGTTCATCCCTAGTCTAA-ACAGTCGGACCGAGGGTTACGGTGGTAGAATCGACAGC
1 GCATACGGAGTTCATTCCTAGTCTAAGACAGTCGGACCGAGGGTTACGGTAGTAGAACCGACAGC
* * * * * * * * *
29523202 ACGCAAGGGGGATTGGGTCGATCCTCGGTTAGCGTATTCTACCTCTCTGGCTAGCTGCGCACCGT
66 ACGCAAAGGGGATCGGGTCAATCCCCGGTTACCGTATTATACCTCTCCGGCCAGCTGCGCACCGC
*
29523267 ACGCCCGTTTCGTGGGTTGGCTTAG
131 ACGCCCGTTTCGTGGGTTGACTTAG
* * * * * * **
29523292 GCATAGGGAGTTCATT-CGATGTCTAAGCCCCAGTCGGATCGAGGGTTACGGTAGTGGGACCGGT
1 GCATACGGAGTTCATTCCTA-GTCTAAG--ACAGTCGGACCGAGGGTTACGGTAGTAGAACCGAC
* * *
29523356 AGCACGCAGAAGGGGATCGGGTCAATCCCCGGTTTCCGTATTATGCCTCTCCGGCCGGCTCAGCG
63 AGCACGCA-AAGGGGATCGGGTCAATCCCCGGTTACCGTATTATACCTCTCCGGCCAGCT--GCG
**
29523421 C-CCGCACGCTTGTTTCGTGGGTTGACTTAG
125 CACCGCACGCCCGTTTCGTGGGTTGACTTAG
* *
29523451 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTATGGTAG
1 GCATACGGAGTTCATTCCTAGTCTAAGA-CAG-TCGGACCGAGGGTTACGGTAG
29523505 CAAGATCGAC
Statistics
Matches: 170, Mismatches: 33, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
153 2 0.01
154 19 0.11
157 35 0.21
158 43 0.25
159 65 0.38
160 6 0.04
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCTAGTCTAAGACAGTCGGACCGAGGGTTACGGTAGTAGAACCGACAGC
ACGCAAAGGGGATCGGGTCAATCCCCGGTTACCGTATTATACCTCTCCGGCCAGCTGCGCACCGC
ACGCCCGTTTCGTGGGTTGACTTAG
Found at i:29523519 original size:159 final size:156
Alignment explanation
Indices: 29523138--29523625 Score: 443
Period size: 158 Copynumber: 3.1 Consensus size: 156
29523128 CCCAGTCTAA
* * **
29523138 GCATACGAAGTTCATCCCTAGTCTAA-ACAGTCGGACCGAGGGTTACGGT-GGTAGAATCGACAG
1 GCATACGGAGTTCATTCCTAGTCTAAGACAGTCGGACCGAGGGTTACGGTAGCAAG-ATCGACAG
* * ** * **
29523201 CACGCA-AGGGGGATTGGGTCGATCCTCGGTTAGCGTATTCTACCTCTCTGGCTAGCT-GCGCAC
65 CACGCAGAGGGGGATCGGGTCGATCCCCGGTTTCCGTATTCTGCCTCTCTGGCCGGCTAGCGC-C
* *
29523264 CGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *** * **
29523292 GCATAGGGAGTTCATT-CGATGTCTAAGCCCCAGTCGGATCGAGGGTTACGGTAGTGGGACCGGT
1 GCATACGGAGTTCATTCCTA-GTCTAAG--ACAGTCGGACCGAGGGTTACGGTAGCAAGATCGAC
* * * *
29523356 AGCACGCAGAAGGGGATCGGGTCAATCCCCGGTTTCCGTATTATGCCTCTCCGGCCGGCTCAGCG
63 AGCACGCAGAGGGGGATCGGGTCGATCCCCGGTTTCCGTATTCTGCCTCTCTGGCCGGCT-AGCG
* *
29523421 CCCGCACGCTTGTTTCGTGGGTTGACTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
29523451 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTATGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGA-CAG-TCGGACCGAGGGTTACGGTAGCAAGATCGACA
* * * * * * * *
29523516 GCACGTAG-GGGGGACCAGGTCGATCCCTGGCTTGTCC--ATTCTGCCTTTTTGGTCGGCTGAGT
64 GCACGCAGAGGGGGATCGGGTCGATCCCCGG-TT-TCCGTATTCTGCCTCTCTGGCCGGCT-AGC
* *
29523578 GCTCGCACGCTCGTTTCGTTGGTTGGCTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
29523609 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
29523626 AATGTCTAAG
Statistics
Matches: 264, Mismatches: 57, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
153 2 0.01
154 19 0.07
157 32 0.12
158 123 0.47
159 79 0.30
160 9 0.03
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.26
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCTAGTCTAAGACAGTCGGACCGAGGGTTACGGTAGCAAGATCGACAGC
ACGCAGAGGGGGATCGGGTCGATCCCCGGTTTCCGTATTCTGCCTCTCTGGCCGGCTAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29523992 original size:26 final size:26
Alignment explanation
Indices: 29523962--29524014 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29523952 GTTAACTTAG
29523962 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29523988 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29524014 G
1 G
29524015 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29524859 original size:26 final size:26
Alignment explanation
Indices: 29524829--29524881 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29524819 GTTGGCTTAG
29524829 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
29524855 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29524881 G
1 G
29524882 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29525395 original size:26 final size:26
Alignment explanation
Indices: 29525359--29525411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29525349 GTTGACTTAG
*
29525359 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
29525385 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
29525411 G
1 G
29525412 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:29526055 original size:158 final size:159
Alignment explanation
Indices: 29525643--29526217 Score: 377
Period size: 158 Copynumber: 3.6 Consensus size: 159
29525633 AGACCGGGCT
* * * * * * * * *
29525643 GATCCCTGACTTGCGCATTATGCCTTTCTC-GTCGA-CTGAGCGCTCACACGCTCGTTTTGTTGG
1 GATCCCCGGCTTGCGCATTATGCC--TCTCGGACTAGCTGAGCGCCCGCAAGCTCGTTTCGTAGG
* * * * * * *
29525706 TTGACTTAGGCATACGGAGTTCATTCC-TAGTCT-AGGATCGGA-CCAGACCGAGGGTTACGGTA
64 TTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATCGA-ACGGAGGGTTGCGGCA
* * * * **
29525768 GCAGGATCGATAACACACAAGGGG-CACCGGGTC
127 GCAGGATCGACAGCACGC-AGGGGAGACCCCGTC
* * * * * * * * * *
29525801 GATCCTCGACTTGCACATTCTGCCTCTCCGA-TCGGTTGAGCGCCTGCATA-CCCGTTTCAT-GG
1 GATCCCCGGCTTGCGCATTATGCCTCTCGGACT-AGCTGAGCGCCCGCA-AGCTCGTTTCGTAGG
* * * * * * **
29525863 TTTGGCTTATGCATAGGGAGTTCATTCGATGTCTAAGCCCCAG-TCGGACGGAGGGTTGTTGCAG
64 -TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACGGAGGGTTGCGGCAG
* * * ** *
29525927 CGGGATCGACAGCATGCAGAGGGA-ATCGGGTT
128 CAGGATCGACAGCACGCAG-GGGAGACCCCGTC
* * * *
29525959 GATCCTCGGCTTGCGCATTATGCCTCTCCGGTCT-GCTTAGCGCCCGTAAGCTCGTTTCGTAGGT
1 GATCCCCGGCTTGCGCATTATGCCTCT-CGGACTAGCTGAGCGCCCGCAAGCTCGTTTCGTAGGT
*** * * *
29526023 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGAACTGATGGTTGCGGTAGC
65 TGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGAACGGAGGGTTGCGGCAGC
*
29526086 AGGATCGATAGCACGCAGGGGAGACCCCGTC
129 AGGATCGACAGCACGCAGGGGAGACCCCGTC
* * * * *
29526117 GATCCCCGGCTTGCGCATTTTGCCTCTCTGACTAGGTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCGGACTAGCTGAGCGCCCGCAAGCTCGTTTCGTAGGTT
* *
29526182 GGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCA
66 GACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
29526218 TACGGAGTTC
Statistics
Matches: 317, Mismatches: 80, Indels: 39
0.73 0.18 0.09
Matches are distributed among these distances:
156 4 0.01
157 18 0.06
158 281 0.89
159 13 0.04
160 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.26
Consensus pattern (159 bp):
GATCCCCGGCTTGCGCATTATGCCTCTCGGACTAGCTGAGCGCCCGCAAGCTCGTTTCGTAGGTT
GACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACGGAGGGTTGCGGCAGCAG
GATCGACAGCACGCAGGGGAGACCCCGTC
Found at i:29526225 original size:26 final size:26
Alignment explanation
Indices: 29526189--29526241 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29526179 GTTGGCTTAG
*
29526189 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29526215 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29526241 G
1 G
29526242 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29532716 original size:39 final size:39
Alignment explanation
Indices: 29532662--29532750 Score: 169
Period size: 39 Copynumber: 2.3 Consensus size: 39
29532652 ATAGGTAGCA
29532662 TGCTAGTGGCTCTCAGTCCCCCTTTGCTTTCCACTTGCC
1 TGCTAGTGGCTCTCAGTCCCCCTTTGCTTTCCACTTGCC
29532701 TGCTAGTGGCTCTCAGTCCCCCTTTGCTTTCCACTTGCC
1 TGCTAGTGGCTCTCAGTCCCCCTTTGCTTTCCACTTGCC
*
29532740 TGCTAATGGCT
1 TGCTAGTGGCT
29532751 TCCTCTTACT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.09, C:0.36, G:0.19, T:0.36
Consensus pattern (39 bp):
TGCTAGTGGCTCTCAGTCCCCCTTTGCTTTCCACTTGCC
Found at i:29535419 original size:159 final size:157
Alignment explanation
Indices: 29535007--29535455 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 157
29534997 CCTAGCTTCG
* * * * * **
29535007 CATTATGCCTCTTCGACCGGCTCAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAAGCATACAA
1 CATTATGCCTCTCCGACTGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* ** *
29535072 AGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTACGACAGCAGGATCGACAGCACGCAG
66 AGTTCATTCCCAGTCTAAGATC-AACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* *
29535137 GGGGGACCAGGCCGATCCCCAACTTGCG
130 GGAGGACCAGGCCGATCCCCAACTTGCA
* * * * * ** *
29535165 CATTCTGCCTCTCCG-GTCGAC-CGAGCGCCCACATGCCCGTTTGGTGGGTTGACTTAGGCATAG
1 CATTATGCCTCTCCGACT-GGCTC-AGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAC
** * * * *
29535228 GGAGTTCATT-CCAGGTCTAAGCCCCAATCGGACTGAGGGTTGTGGCAGCGGGTTCGGCAGCACG
64 GGAGTTCATTCCCA-GTCTAAG-ATCAACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * **
29535292 CAGAGGAGGATCAGGCCGATCCTCGGCTTGCA
127 CAG-GGAGGACCAGGCCGATCCCCAACTTGCA
** ** *
29535324 CATTATGCCTCTCCGACTGGCTCAGTACCCTTACGCTCTTTTCATGGGTTGACTTAGGCATACGG
1 CATTATGCCTCTCCGACTGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
29535389 AGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGATAGCACGTAG
66 AGTTCATTCCCAGTCTAAGATCA-ACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
29535454 GG
130 GG
29535456 GGTGATCGGG
Statistics
Matches: 227, Mismatches: 55, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 100 0.44
159 118 0.52
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
CATTATGCCTCTCCGACTGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGG
GAGGACCAGGCCGATCCCCAACTTGCA
Found at i:29535468 original size:159 final size:157
Alignment explanation
Indices: 29534989--29535555 Score: 502
Period size: 158 Copynumber: 3.6 Consensus size: 157
29534979 AAAGGGACTG
* * * *
29534989 GGCCAATCCCTAGCTT-CGCATTATGCCTCTTCGAC-CGGCTCAGCGCTCGCACGCTCGTTTCAT
1 GGCCGATCCC-AGCTTGCGCATTATGCCTCTCCGACTCGGCTCAGCACCCGCACGCTCGTTTCAT
* ** * ** *
29535052 GGGTTGACTTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTACGACA
65 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACTGAGGGTTGTGGCA
*
29535117 GCAGGATCGACAGCACGCAGGGGGGACCA
129 GCAGGATCGACAGCACGCAGGGGGGATCA
* * * * * * * * **
29535146 GGCCGATCCCCAACTTGCGCATTCTGCCTCTCCG-GTCGAC-CGAGCGCCCACATGCCCGTTTGG
1 GGCCGAT-CCCAGCTTGCGCATTATGCCTCTCCGACTCGGCTC-AGCACCCGCACGCTCGTTTCA
* ** *
29535209 TGGGTTGACTTAGGCATAGGGAGTTCATT-CCAGGTCTAAGCCCCAATCGGACTGAGGGTTGTGG
64 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAACCGGACTGAGGGTTGTGG
* * * *
29535273 CAGCGGGTTCGGCAGCACGCAGAGGAGGATCA
127 CAGCAGGATCGACAGCACGCAG-GGGGGATCA
* * * ** *
29535305 GGCCGATCCTCGGCTTGCACATTATGCCTCTCCGACT-GGCTCAGTACCCTTACGCTCTTTTCAT
1 GGCCGATCC-CAGCTTGCGCATTATGCCTCTCCGACTCGGCTCAGCACCCGCACGCTCGTTTCAT
* * *
29535369 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGTA
65 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACTGAGGGTTGTGGCA
* * *
29535434 GCAGGATCGATAGCACGTAGGGGGTGATCG
129 GCAGGATCGACAGCACGCAGGGGG-GATCA
* ** * * * * ** *
29535464 GGCCGGTCCCAGCTTATGCATTCT-CTCTCTCCGA-TCGGCTGAGCACTCGTAATCTCGTTTCGT
1 GGCCGATCCCAGCTTGCGCATTATGC-CTCTCCGACTCGGCTCAGCACCCGCACGCTCGTTTCAT
*
29535527 GGGTTGGCTTAGGCATACGGAGTTCATTC
65 GGGTTGACTTAGGCATACGGAGTTCATTC
29535556 AATGTCTAAG
Statistics
Matches: 323, Mismatches: 72, Indels: 29
0.76 0.17 0.07
Matches are distributed among these distances:
157 16 0.05
158 174 0.54
159 128 0.40
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
GGCCGATCCCAGCTTGCGCATTATGCCTCTCCGACTCGGCTCAGCACCCGCACGCTCGTTTCATG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACTGAGGGTTGTGGCAGC
AGGATCGACAGCACGCAGGGGGGATCA
Found at i:29535771 original size:26 final size:26
Alignment explanation
Indices: 29535735--29535787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29535725 GTTGACTTAG
29535735 GCATAAAGAGTTCATCCCCAGTCTAA
1 GCATAAAGAGTTCATCCCCAGTCTAA
* *
29535761 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATCCCCAGTCTAA
29535787 G
1 G
29535788 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATAAAGAGTTCATCCCCAGTCTAA
Found at i:29536834 original size:26 final size:26
Alignment explanation
Indices: 29536796--29536849 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
29536786 TGGGTTGACT
29536796 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
29536822 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
29536848 TA
1 TA
29536850 AGATCGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:29537511 original size:26 final size:26
Alignment explanation
Indices: 29537482--29537534 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29537472 GTTGGCTTAG
*
29537482 GCATACAGAGTTGATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
29537508 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29537534 G
1 G
29537535 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29537537 original size:196 final size:197
Alignment explanation
Indices: 29537187--29537705 Score: 600
Period size: 196 Copynumber: 2.6 Consensus size: 197
29537177 GGCAGCAGAT
* * * * * * * * * *
29537187 TCGACAACATGTAGGAGGGATCGGGCCGATGCC-CGACTTGTGTATTCTACCTC-TCCAGTCGAT
1 TCGACAGCATGTAGGGGGGATCGGGTCGATACCTCGGCTTGTGCATTCTGCCTCTTCGACT-GGT
* * * * * *
29537250 TGAGTGCTCACATGTTCGATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
65 TGAGTGCCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * * * *
29537315 TAAGAAGTTCATTCCCAATCTAAGATC-AGATCAGATCGAGGGTTACGGCAGCAAGACTAGCAGT
130 TAAGAAGTTCATTCCCAATCTAAGATCGA-ACCAGACCGAGGGTTACGACAGCAAGACCAGCAGA
29537379 AGGA
194 AGGA
* *
29537383 TCGACAGCATGCAGGGGGGATCGGGTCGAT-CCTCGGCTTGTGGATTCTGCCTCTTCGACTGGTT
1 TCGACAGCATGTAGGGGGGATCGGGTCGATACCTCGGCTTGTGCATTCTGCCTCTTCGACTGGTT
* *
29537447 GAGTGCCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTGATTCCATGTCTAAGCAT
66 GAGTGCCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
* * * * *
29537512 ATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGCAAGACCAGCAGAAG
131 AAGAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGACCAGCAGAAG
29537577 GA
196 GA
* * * * * * * *
29537579 TTGGCAGCACGTAGGGGTGGACCGGGTCGATACCT-GGCTTGAGCATTCTGCCTCTCCGCCCGGT
1 TCGACAGCATGTAGGGG-GGATCGGGTCGATACCTCGGCTTGTGCATTCTGCCTCTTCGACTGGT
* * *
29537643 T-AGTGCCTGCACGCTCGTTTTGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TGAGTGCCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29537706 CCCAGTCGGA
Statistics
Matches: 275, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
195 2 0.01
196 228 0.83
197 42 0.15
198 3 0.01
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (197 bp):
TCGACAGCATGTAGGGGGGATCGGGTCGATACCTCGGCTTGTGCATTCTGCCTCTTCGACTGGTT
GAGTGCCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
AAGAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGACCAGCAGAAG
GA
Found at i:29537912 original size:26 final size:26
Alignment explanation
Indices: 29537863--29537915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29537853 GTTGACTTAG
*
29537863 GCATACGGAGTTCATCTCCGGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
29537889 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
29537915 G
1 G
29537916 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:29538418 original size:25 final size:25
Alignment explanation
Indices: 29538389--29538436 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
29538379 GTTGACTTAG
29538389 GCATACGGAGTTCATCCCCAGTCAA
1 GCATACGGAGTTCATCCCCAGTCAA
*
29538414 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATCCCCAGTC
29538437 TAAGATCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGTCAA
Found at i:29538565 original size:183 final size:181
Alignment explanation
Indices: 29538366--29538940 Score: 461
Period size: 183 Copynumber: 3.2 Consensus size: 181
29538356 GTGCCCGTAC
* * *
29538366 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAGCATACGGAGTTCATTC
1 GCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAGCATACAGAGTTCA-TC
*
29538431 CCAGTCTAAGATCAGAGCGAACTGAGGGTTGTGGTAGCAGAATCGATAGCACGCAGGAGAGACCG
65 CCAGTCTAAGATCAGAGCGAACTGAGGGTTGTGG-AGCAGAATCGATAGCACGCAGGAGGGACCG
*
29538496 GGTCGATCCCTTGCTTGCGTATTCTACCTCTCTGGTCGGCTGAACCCCTGCAT
129 GGTCGATCCCTTGCTTGCGTATTCTACCTCTCCGGTCGGCTGAACCCCTGCAT
* * * * *
29538549 GCTCATTCCGTGGGTTGGCTTAGGCATACTGAGTTCAT-TCCATGTCTAAGCCCTAGCCG-G---
1 GCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC-AAG-CATA-CAGAGTTC
* ** * * ** ** * * * * *
29538609 A-CCGAGGGT-TG-T-GGCAGC-AA--GA---CCGACGA-CGGGATCAATAGCACACAAAGAGGG
62 ATCCCAGTCTAAGATCAG-AGCGAACTGAGGGTTGTGGAGCAGAATCGATAGCACGC-AGGAGGG
* * * * ** * * * *
29538663 ACTGGG-CTGATCCC-CGACTTGC-TCATTATGCCTCTCCGACCGGTTGAGCACCTGCAC
125 ACCGGGTC-GATCCCTTG-CTTGCGT-ATTCTACCTCTCCGGTCGGCTGAACCCCTGCAT
* ** * * *
29538720 GCTCGTTTTGTGGGTTGACTTAAGCATATGGAGTTCATCCTCAGTCAAGCATACAGAGTTCATCC
1 GCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAGCATACAGAGTTCAT-C
*
29538785 CCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGCATG-ATCGATAGCACGCAGGAGGGACC
65 CCAGTCTAAGATCAGAGCGAACTGAGGGTTGTGG-AGCA-GAATCGATAGCACGCAGGAGGGACC
* * * *
29538849 GGGCCGATCCCTTGCTTGTGCATTCTACCTCTCCGGTCGGCTGAACCCCCGCAT
128 GGGTCGATCCCTTGCTTGCGTATTCTACCTCTCCGGTCGGCTGAACCCCTGCAT
* *
29538903 GCTCATTCCGTGGGTTGGCTTAGGCATACTGAGTTCAT
1 GCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCAT
29538941 TCTATGTCTA
Statistics
Matches: 283, Mismatches: 78, Indels: 62
0.67 0.18 0.15
Matches are distributed among these distances:
168 2 0.01
169 4 0.01
170 19 0.07
171 80 0.28
172 5 0.02
174 5 0.02
175 3 0.01
176 3 0.01
177 6 0.02
178 4 0.01
179 3 0.01
180 5 0.02
182 6 0.02
183 114 0.40
184 17 0.06
185 5 0.02
186 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (181 bp):
GCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAGCATACAGAGTTCATCC
CAGTCTAAGATCAGAGCGAACTGAGGGTTGTGGAGCAGAATCGATAGCACGCAGGAGGGACCGGG
TCGATCCCTTGCTTGCGTATTCTACCTCTCCGGTCGGCTGAACCCCTGCAT
Found at i:29538778 original size:25 final size:25
Alignment explanation
Indices: 29538741--29538790 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
29538731 GGGTTGACTT
** *
29538741 AAGCATATGGAGTTCATCCTCAGTC
1 AAGCATACAGAGTTCATCCCCAGTC
29538766 AAGCATACAGAGTTCATCCCCAGTC
1 AAGCATACAGAGTTCATCCCCAGTC
29538791 TAAGATCAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (25 bp):
AAGCATACAGAGTTCATCCCCAGTC
Found at i:29538793 original size:354 final size:352
Alignment explanation
Indices: 29538359--29539330 Score: 1306
Period size: 354 Copynumber: 2.7 Consensus size: 352
29538349 CGATTAAGTG
* * *
29538359 CCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAGCATACGGAG
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCAAGCATACGGAG
* *
29538424 TTCATTCCCAGTCTAAGATCAGAGCGAACTGAGGGTTGTGGTAGCAGAATCGATAGCACGCAGGA
66 TTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGCAG-ATCGATAGCACGCAGGA
* * * *
29538489 GAGACCGGGTCGATCCCTTGCTTGCGTATTCTACCTCTCTGGTCGGCTGAACCCCTGCATGCTCA
130 GGGACCGGGTCGATCCCTTGCTTGTGCATTCTACCTCTCCGGTCGGCTGAACCCC-GCATGCTCA
*
29538554 TTCCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTT
194 TTCCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
*
29538619 GTGGCAGCAAGACCGAC-GACGGGATCAATAGCACACAAAGAGGGA-CTGGGCTGATCCCCGACT
259 GTGGCAGCAAGACCGACAG-CGGGATCAATAGCACACAAAGAGGGATC-GGGCTAATCCCCGACT
29538682 TGCTCATTATGCCTCTCCGACCGGTTGAGCA
322 TGCTCATTATGCCTCTCCGACCGGTTGAGCA
* ** * * *
29538713 CCTGCACGCTCGTTTTGTGGGTTGACTTAAGCATATGGAGTTCATCCTCAGTCAAGCATACAGAG
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCAAGCATACGGAG
*
29538778 TTCATCCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGCATGATCGATAGCACGCAGGA
66 TTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGCA-GATCGATAGCACGCAGGA
*
29538843 GGGACCGGGCCGATCCCTTGCTTGTGCATTCTACCTCTCCGGTCGGCTGAACCCCCGCATGCTCA
130 GGGACCGGGTCGATCCCTTGCTTGTGCATTCTACCTCTCCGGTCGGCTGAA-CCCCGCATGCTCA
* * *
29538908 TTCCGTGGGTTGGCTTAGGCATACTGAGTTCATTCTATGTCTAAGCCCCAGTCGGACTGAGGGTT
194 TTCCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * * * * * *
29538973 GTGGGAGCAGGACTGACAGCGGGATCAGTAGCACGCAGAGGGGGATCGGGCTAATCCCTGACTTG
259 GTGGCAGCAAGACCGACAGCGGGATCAATAGCACACAAAGAGGGATCGGGCTAATCCCCGACTTG
* *
29539038 TTCATTATGCCTCTTCGACCGGTTGAGCA
324 CTCATTATGCCTCTCCGACCGGTTGAGCA
*
29539067 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGCCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTC-AAGCATACGGA
* * * * * ** * *
29539132 GTTCATTCCCAGTCTAAGATCGGATC-AGACCGTGGGTTGCGACAGCAGGATCGGCAGCATGTAG
65 GTTCATTCCCAGTCTAAGATCAGATCGA-ACTGAGGGTTGTGGCAGCA-GATCGATAGCACGCAG
* * * * * *
29539196 G-GGGACCGGGTCGATCCC-TGACTTGTGCATTCTACCTCTCCGGCCAGTTGAGCGCCCGTACGC
128 GAGGGACCGGGTCGATCCCTTG-CTTGTGCATTCTACCTCTCCGGTCGGCTGAAC-CCCGCATGC
* * * * ** * *
29539259 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAGG
191 TCATTCCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
29539324 GTTGTGG
256 GTTGTGG
29539331 TAGCGGGACT
Statistics
Matches: 542, Mismatches: 68, Indels: 16
0.87 0.11 0.03
Matches are distributed among these distances:
353 3 0.01
354 470 0.87
355 69 0.13
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (352 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGCAGATCGATAGCACGCAGGAG
GGACCGGGTCGATCCCTTGCTTGTGCATTCTACCTCTCCGGTCGGCTGAACCCCGCATGCTCATT
CCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
GGCAGCAAGACCGACAGCGGGATCAATAGCACACAAAGAGGGATCGGGCTAATCCCCGACTTGCT
CATTATGCCTCTCCGACCGGTTGAGCA
Found at i:29539127 original size:26 final size:26
Alignment explanation
Indices: 29539097--29539149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29539087 GTTGACTTAG
*
29539097 GCATATGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
29539123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
29539149 G
1 G
29539150 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:29539663 original size:159 final size:158
Alignment explanation
Indices: 29539194--29539771 Score: 488
Period size: 158 Copynumber: 3.7 Consensus size: 158
29539184 GGCAGCATGT
* *
29539194 AGGGGGACCGGGTCGATCCCTGACTTGTGCATTCTA-CCTCTC-CGGCCAGTTGAGCGCCCGTAC
1 AGGGGGACCGGGTCGATCCC-GACTTGTGCATTCTATCCTCTCTCGGCCAGCTGAGCGCCCGAAC
* * *
29539257 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGA
65 GCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGA
* *
29539322 GGGTTGTGGTAGCGGGACTGGCAGCACGCAG
130 GGGTTGT-GCAGTGGGACT-GCAGCACGCAG
* * * * * *
29539353 AGGTGGACCGGCT-GATCCCCGACTTGTGCA-T-TATGCCT-TTTCGGTCGGCTTAGCGCCCGAA
1 AGGGGGACCGGGTCGAT-CCCGACTTGTGCATTCTAT-CCTCTCTCGGCCAGCTGAGCGCCCGAA
* *** * * * ** *
29539414 CACTAATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-AATAGACCGGAC
64 CGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGAC
* *
29539477 TGAGGGTTACG-GCAGTAGGA-T-CGAGCACGCAG
127 CGAGGGTT--GTGCAGTGGGACTGC-AGCACGCAG
* ** *
29539509 -GGGGGACCGGGTCGATCCACGGCTTGCACATTCTATTCCCTCTCTC-GCCAGCTGAGCGCCCGC
1 AGGGGGACCGGGTCGATCC-CGACTTGTGCATTCTA-T-CCTCTCTCGGCCAGCTGAGCGCCCGA
* *
29539572 ACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCGTGTCTAAGCCCTAGTCAGACC
63 ACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACC
29539636 GAGGGTTGTGCAGTGGGACTGACAGCACGCAG
128 GAGGGTTGTGCAGTGGGACTG-CAGCACGCAG
* * * * * * * **
29539668 AGGGGGACCGGGTTGACCCTCGGCTTGTGCA-T-TATGCCTCTC-CGACCAGCTCAGCACCTGTG
1 AGGGGGACCGGGTCGATCC-CGACTTGTGCATTCTAT-CCTCTCTCGGCCAGCTGAGCGCCCGAA
* * * * *
29539730 CACTCATTTCATGGGATGACTTAGGCATACGGAGTTCATTCC
64 CGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
29539772 CAATCTAAGA
Statistics
Matches: 328, Mismatches: 67, Indels: 49
0.74 0.15 0.11
Matches are distributed among these distances:
155 13 0.04
156 24 0.07
157 59 0.18
158 131 0.40
159 71 0.22
160 30 0.09
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGGGGACCGGGTCGATCCCGACTTGTGCATTCTATCCTCTCTCGGCCAGCTGAGCGCCCGAACG
CCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAG
GGTTGTGCAGTGGGACTGCAGCACGCAG
Found at i:29539753 original size:316 final size:312
Alignment explanation
Indices: 29539123--29539939 Score: 880
Period size: 316 Copynumber: 2.6 Consensus size: 312
29539113 CCCAGCCTAA
* * * * * *
29539123 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGTGGGTTGCGACAGCAGGATCG-GC
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGA-CCGACTGAGGGTTACGACAGTAGGATCGAGC
* *
29539187 A-GCATGTAGGGGGACCGGGTCGATCCCTGACTTGTGCATTCTA-CCTCTC-CGGCCAGTTGAGC
64 ACGCA-G--GGGGGACCGGGTCGATCCC-GGCTTGCGCATTCTATCCTCTCTC-GCCAGTTGAGC
* * *
29539249 GCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGC
124 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
29539314 CAGACCGAGGGTTGTGGTAGCGGGACTGGCAGCACGCAGAGGTGGACCGGCTGATCCCCGACTTG
189 CAGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGACCGGCTGATCCCCGACTTG
* * ** * * * * *
29539379 TGCATTATGCCTTTTCGGTCGGCTTAGCGCCCGAACACTAATTTCGTGGGTTGACTTAG
254 TGCATTATGCCTCTCCGACCAGCTCAGCACCCGAACACTAATTTCATGGGATGACTTAG
* *
29539438 GCATACGAAGTTCATTCCCAGTCTAAGAATAGACCGGACTGAGGGTTACGGCAGTAGGATCGAGC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATAGACC-GACTGAGGGTTACGACAGTAGGATCGAGC
* *
29539503 ACGCAGGGGGGACCGGGTCGATCCACGGCTTGCACATTCTATTCCCTCTCTCGCCAGCTGAGCGC
64 ACGCAGGGGGGACCGGGTCGATCC-CGGCTTGCGCATTCTA-T-CCTCTCTCGCCAGTTGAGCGC
* * *
29539568 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCGTGTCTAAGCCCTAGTCA
126 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * *
29539632 GACCGAGGGTTGT-GCAGTGGGACTGACAGCACGCAGAGGGGGACCGGGTTGA-CCCTCGGCTTG
191 GACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGACC-GGCTGATCCC-CGACTTG
* ** *
29539695 TGCATTATGCCTCTCCGACCAGCTCAGCACCTGTGCACTCATTTCATGGGATGACTTAG
254 TGCATTATGCCTCTCCGACCAGCTCAGCACCCGAACACTAATTTCATGGGATGACTTAG
* * * * *
29539754 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCGAATCGAAGGTTACGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAG-ACCGACT-GAGGGTTACGACAGTAGGATCG--A
* * ** * * * * *
29539819 TCACACAGGGGGGATAGGG-CTGATCCTCGGCTTACGCATTCT-GCCTCT-TCGATCGGTTGAGT
62 GCACGCAGGGGGGACCGGGTC-GATCC-CGGCTTGCGCATTCTATCCTCTCTCG-CCAGTTGAGC
* * * *
29539881 GCCCGCATGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
124 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29539940 ATACAGAGTT
Statistics
Matches: 424, Mismatches: 60, Indels: 35
0.82 0.12 0.07
Matches are distributed among these distances:
314 34 0.08
315 130 0.31
316 170 0.40
317 55 0.13
318 35 0.08
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (312 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGACCGACTGAGGGTTACGACAGTAGGATCGAGCAC
GCAGGGGGGACCGGGTCGATCCCGGCTTGCGCATTCTATCCTCTCTCGCCAGTTGAGCGCCCGCA
CGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
AGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGACCGGCTGATCCCCGACTTGTGCATTA
TGCCTCTCCGACCAGCTCAGCACCCGAACACTAATTTCATGGGATGACTTAG
Found at i:29539941 original size:26 final size:26
Alignment explanation
Indices: 29539912--29539964 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29539902 GTTGGCTTAG
*
29539912 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29539938 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29539964 G
1 G
29539965 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29540328 original size:26 final size:26
Alignment explanation
Indices: 29540292--29540344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29540282 GTTGACTTAG
*
29540292 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
29540318 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29540344 G
1 G
29540345 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29540674 original size:26 final size:25
Alignment explanation
Indices: 29540635--29540686 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
29540625 GTTGGCTTAG
*
29540635 GCATACGTGTTCATT-CCATGTCTAA
1 GCATACGAGTTCATTCCCA-GTCTAA
29540660 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
29540686 G
1 G
29540687 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 15 0.62
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:29546102 original size:159 final size:159
Alignment explanation
Indices: 29545813--29546209 Score: 455
Period size: 159 Copynumber: 2.5 Consensus size: 159
29545803 ACGCAAAGTC
* * * * * *
29545813 TGCCTCTCCGGCCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGTTC
1 TGCCTCTTCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * *
29545878 ATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGTAGCAGGACCGACAGCACGTAGAGGGG
66 ATTCCATGTCTAAGCACCAGCCGGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGG
* *
29545943 GATC-GAGCTGATCCCCGACTTGCACATTA
131 GACCAGA-CCGATCCCCGACTTGCACATTA
* * * *
29545972 TGCCTCTTCGGTCGACTCAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTTCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * *
29546037 ATTCCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGCCT-GTAGCAGGATCGATAGCACGCAG-
66 ATT-CCATGTCTAAGCACCAG-CCGGACTGAGGGTTG--TGGTAGCAGGACCGACAGCACGCAGA
* * *
29546098 GGGGGACCAGACCGGTCCCCGACTTGCGCATTC
127 GGGGGACCAGACCGATCCCCGACTTGCACATTA
* * * * *
29546131 TACCTC-TCTGGCCGGCTGAGCGCCCCCATGCTCATTTCATGGGTTGGCTTAGGGATACGGAGTT
1 TGCCTCTTC-GGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
29546195 CATTCCATGTCTAAG
65 CATTCCATGTCTAAG
29546210 GATACGAAGT
Statistics
Matches: 200, Mismatches: 31, Indels: 14
0.82 0.13 0.06
Matches are distributed among these distances:
158 8 0.04
159 166 0.83
160 25 0.12
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
TGCCTCTTCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGCCGGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGG
GACCAGACCGATCCCCGACTTGCACATTA
Found at i:29546213 original size:26 final size:26
Alignment explanation
Indices: 29546183--29546235 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29546173 GTTGGCTTAG
*
29546183 GGATACGGAGTTCATT-CCATGTCTAA
1 GGATACGAAGTTCATTCCCA-GTCTAA
29546209 GGATACGAAGTTCATTCCCAGTCTAA
1 GGATACGAAGTTCATTCCCAGTCTAA
29546235 G
1 G
29546236 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GGATACGAAGTTCATTCCCAGTCTAA
Found at i:29546519 original size:13 final size:13
Alignment explanation
Indices: 29546501--29546525 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29546491 GCGCATTATG
29546501 CCTCTCCGGCCGA
1 CCTCTCCGGCCGA
29546514 CCTCTCCGGCCG
1 CCTCTCCGGCCG
29546526 CTGAGCGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.56, G:0.24, T:0.16
Consensus pattern (13 bp):
CCTCTCCGGCCGA
Found at i:29546892 original size:159 final size:160
Alignment explanation
Indices: 29546656--29547092 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 160
29546646 GATCGGCATA
* * * * * *
29546656 ACGCAG-GGGGGACCGGGCCAATCCCTGGCTTGCGTATTTTGCCTC-CTTGGCCGGCTAAGCTCC
1 ACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTC-TGGCCGGCTAAGCACC
* * * **
29546719 C-GTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CC
65 CTGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC-AGACC
* * ** **
29546782 AGATCGAGGGTTGTGGCAGTGGGACCGGTAGC
129 AGAACGAGGGTTGCGGCAGCAGGACCAATAGC
* * * * *
29546814 ATGCCGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGC-CCC
1 ACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTAAGCACCC
* * ** * *
29546878 TGAACGCTCATTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGGACTA
66 TGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCAGACCA
*
29546942 GAACGAGGGTTGCGGCAGCAGGATCAATAGC
130 GAACGAGGGTTGCGGCAGCAGGACCAATAGC
* * * *
29546973 CCGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCA-GCCTCTCTGACCGGCTGAGCACC
1 ACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATT-ATGCCTCTCTGGCCGGCTAAGCACC
* * *
29547037 CT-CATGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
65 CTGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
29547093 ATACAGAGTT
Statistics
Matches: 229, Mismatches: 42, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
158 11 0.05
159 209 0.91
160 9 0.04
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
ACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTAAGCACCC
TGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGACCAG
AACGAGGGTTGCGGCAGCAGGACCAATAGC
Found at i:29547095 original size:26 final size:26
Alignment explanation
Indices: 29547065--29547117 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29547055 GTTGGCTTAG
29547065 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29547091 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29547117 G
1 G
29547118 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29547797 original size:26 final size:26
Alignment explanation
Indices: 29547761--29547813 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29547751 GCTGGCTTAG
*
29547761 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29547787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29547813 G
1 G
29547814 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29549228 original size:26 final size:26
Alignment explanation
Indices: 29549191--29549243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29549181 GTTGGCTTAT
*
29549191 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
29549217 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29549243 G
1 G
29549244 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:29550279 original size:26 final size:26
Alignment explanation
Indices: 29550243--29550293 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29550233 TGACTTATGC
*
29550243 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGAAGTTCATCCCCAGTCTAAGG
*
29550269 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
29550294 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGG
Found at i:29550754 original size:158 final size:157
Alignment explanation
Indices: 29550269--29551111 Score: 589
Period size: 170 Copynumber: 5.2 Consensus size: 157
29550259 CAGTCTAAGG
* * * * * *
29550269 ATACGAAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCGACAGTAGGATCGACAG
1 ATACGGAGTTCATT-CCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGGCAGCAAGATCGACAG
* ** * * * *
29550333 CATGCA-GGGGGAGCCAGGCCGGT-CTCTGGCTTGCACATTCTACCTCTCCGGTCGGTTGAGCGC
64 CACGCAGGGGGGA-CCAGGCCAATCCTC-GACTTGCGCATTCTACCTCTCCGATCGGCTGAGCG-
* * *
29550396 ACCCGCACGCCCGTTTCATGGGTTGGCTTTGGC
126 -CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * ** * * ** * *
29550429 ATAGGGAATTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGTAGCCGGACCGGCAG
1 ATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAG
* * *** ** * * ** * * * * *
29550493 CACGTAGAGGAGGATTGGGCTGATCCTTGGCTTATGCATTATGCCTCTCCGATCGACTCAGCACC
64 CACGCAG-GGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCC
* * *
29550558 CGTACGCTCGTTTCGTAGGTTGACTTAGGC
128 CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
29550588 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAAGATCGACAGC
1 ATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGC
* * *
29550653 ACGCAGGGGGGACCAGGCCAATCCTCGACATGCGCATTCTACCTCTCTGGTCGGCTGAGCGCCCG
65 ACGCAGGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCG
* *
29550718 CACGTTCGTTACGTGGGTTGGCTTAGGC
130 CACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
29550746 ATATGGAGTTTATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGC
1 ATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGT-------GG--CAGCA--
* * * * *
29550811 AGGATCGACAGCACGTACGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGACCA
54 A-GATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCCGATCG
**
29550876 GCTGAGCTACCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
118 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* ** *
29550916 ATACGAAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAAGGTTGTGGTAGCAAGACCGGCAG
1 ATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGT-G--GC---A---GCA-
* * * ** * * *
29550980 CGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATACCTCTCCGAC
54 --AGATCGACAGCACGCAG-GGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCCGAT
* * * *
29551045 CAGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGC
116 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * *
29551087 ATATGGAGTTAATCCCCAGTCTAAG
1 ATACGGAGTTCAT-TCCAGTCTAAG
29551112 CATACTGAGT
Statistics
Matches: 533, Mismatches: 117, Indels: 55
0.76 0.17 0.08
Matches are distributed among these distances:
158 111 0.21
159 82 0.15
160 47 0.09
161 31 0.06
162 8 0.02
164 2 0.00
165 2 0.00
166 1 0.00
167 6 0.01
169 2 0.00
170 143 0.27
171 95 0.18
172 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
ATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCA
CGCAGGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:29551111 original size:171 final size:170
Alignment explanation
Indices: 29550636--29551113 Score: 591
Period size: 170 Copynumber: 2.8 Consensus size: 170
29550626 GAGGGTTGTG
* * *
29550636 GCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCGACATGCGCATTCTACCTCTCT
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCC
** * * * * *
29550701 GGTCGGCTGAGCGCCCGCACGTTCGTTACGTGGGTTGGCTTAGGCATATGGAGTTTATTCCTAGT
66 GACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAG-TTAATCCCAGT
* * *
29550766 CTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCA
130 CTAAGCACCAGACCGGACCGAAGGTTGTGGCAGCAAGACCA
* * *
29550806 GCAGCAGGATCGACAGCACGTACGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCC
** * * * *
29550871 GACCAGCTGAGCTACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
66 GACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTAATCCCA-GT
* * *
29550936 CTAAGCCCCAG-CCGGACCGAAGGTTGTGGTAGCAAGACCG
130 CTAAGCACCAGACCGGACCGAAGGTTGTGGCAGCAAGACCA
* * * ** * *
29550976 GCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATACCTCTC
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTC
* * *
29551041 CGACCAGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTAATCCCCAG
65 CGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTAAT-CCCAG
29551106 TCTAAGCA
129 TCTAAGCA
29551114 TACTGAGTTC
Statistics
Matches: 259, Mismatches: 45, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
169 5 0.02
170 155 0.60
171 96 0.37
172 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (170 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCC
GACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTAATCCCAGTC
TAAGCACCAGACCGGACCGAAGGTTGTGGCAGCAAGACCA
Found at i:29551399 original size:15 final size:15
Alignment explanation
Indices: 29551379--29551412 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
29551369 GCATTATGCT
*
29551379 TTTCCCACACGTTCA
1 TTTCCCACACGCTCA
29551394 TTTCCCACACGCTCA
1 TTTCCCACACGCTCA
29551409 TTTC
1 TTTC
29551413 ATGGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (15 bp):
TTTCCCACACGCTCA
Found at i:29551622 original size:26 final size:26
Alignment explanation
Indices: 29551586--29551638 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29551576 GTTGACTTCT
29551586 GCATACGGAGTTCATTCCACA-TCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
29551612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29551638 G
1 G
29551639 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29551796 original size:184 final size:185
Alignment explanation
Indices: 29551427--29551797 Score: 480
Period size: 184 Copynumber: 2.0 Consensus size: 185
29551417 GTTGACTTAG
*
29551427 GCATACGGAGTTCATTACCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTACCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
** *
29551492 GCATGCAGTGGGGCACCAGCTTGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
66 GCATGCAGTGGGGCACCAGCTTGATCCCTAGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCAC
* ** * **
29551557 TCGCACGCTTGTTTTATGGGTTGACTTCTGCATACGGAGTTCATTCCACATCTAA
131 CCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCACATCTAA
* * * * *
29551612 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTC-GACAGCATGATCGAT
1 GCATACGGAGTTCATTACCAGTCTAAGATCAGACCGAACCGAGGGTTGCAG-CAGCAGGATCGAC
* * *
29551676 AGCATGCAG-GGGGGACCGGGC-TGATTCCC-AGCTTGCACATTCTGCGTCTCCGACCGGCTGAG
65 AGCATGCAGTGGGGCACC-AGCTTGA-TCCCTAGCTTGCACATTCTGCCTCTCCGACCGGCTGAG
* * * * *
29551738 CACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATATCTAA
128 CACCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCACATCTAA
29551796 GC
1 GC
29551798 CCCAGCTGGA
Statistics
Matches: 160, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
184 89 0.56
185 71 0.44
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTACCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
GCATGCAGTGGGGCACCAGCTTGATCCCTAGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCAC
CCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCACATCTAA
Found at i:29551876 original size:502 final size:500
Alignment explanation
Indices: 29550989--29552098 Score: 1216
Period size: 502 Copynumber: 2.2 Consensus size: 500
29550979 GCGGGATCGA
* * * * * *
29550989 CAGCACGCAGAGGGGGATCGGGCTGATCCCC-GACTTGCGCATTATACCTCTCCGACCAGCTGAG
1 CAGCACGCAG-GGGGCACCGAGCCGATCCCCAG-CTTGCGCATTCTACCTCTCCGACCGGCTGAG
* * * * * *
29551053 CGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTAATCCCCAGTCTAAGCATACT
64 CGCTCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTAATCCACAGTCTAAGCATACG
* ** * * *
29551118 GAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCAGGAGCAGGATCGGTAGCACGCA
129 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGATAGCACGCA
** ** * * * * *
29551183 AGGGGACCGGGTCGATCCTTGGCTTGCGTACTCTGCCTCTCCGATCGATTGAGCGCCCGTACATC
194 AGGGGACCGGGTCGATCCTCAGCTTGCACACTCTGCCTCTCCGACCGACTGAGCACCCGCACACC
* * *
29551248 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCGGCCAGACCGAGGG
259 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAGGC
* * *
29551313 TTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCTGCGCATTATG-
324 TTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCTACGCATTAAGC
* * *** * *
29551377 CTTTTC-CCACACGTTCATTTCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
389 CTCTTCGCC-C-CGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
* **
29551441 TTACC-AGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGTAGGATCGA-
452 TT-CCTAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCACCAGGAT-GAG
* * * * *
29551490 CAGCATGCAGTGGGGCACC-AGCTTGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAG
1 CAGCACGCAG-GGGGCACCGAGC-CGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
* ** *
29551554 CGCTCGCACGCTTGTTTTATGGGTTGACTTCTGCATACGGAGTTCATTCCACA-TCTAAGCATAC
64 CGCTCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTT-AATCCACAGTCTAAGCATAC
* * *
29551618 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTC-GACAGCATGATCGATAGCATG
128 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGCAGGATCGATAGCACG
* * * *
29551682 CAGGGGGGACCGGG-CTGATTCC-CAGCTTGCACATTCTGCGTCTCCGACCGGCTGAGCACCCGC
192 CA-AGGGGACCGGGTC-GA-TCCTCAGCTTGCACACTCTGCCTCTCCGACCGACTGAGCACCCGC
* * **
29551745 ACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATATCTAAGCCCCAGCTGGACC
254 ACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACC
* * * * * *
29551810 GAGGCTTGTGGCAGCGGGACCGGTAGCATGCAGAGGGGGACTGGGTCGATCCCTGGCTTACGCAT
319 GAGGCTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCTACGCAT
* * * * * *
29551875 TAAGCCTCTTCGGCCGGCTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTATGCATACAGAGT
384 TAAGCCTCTTCGCCCCGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGT
* * * *
29551940 TCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCACCAGGATTAG
449 TCATTCCTAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCACCAGGATGAG
* * * *
29551992 CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCGGTTGAGCG
1 CAGCACGCAGGGGGCACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG
* ** ** *
29552057 -TGCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTT
66 CT-CGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTT
29552099 CATTCCATGT
Statistics
Matches: 500, Mismatches: 96, Indels: 26
0.80 0.15 0.04
Matches are distributed among these distances:
500 4 0.01
501 230 0.46
502 256 0.51
503 9 0.02
504 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (500 bp):
CAGCACGCAGGGGGCACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG
CTCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTAATCCACAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGATAGCACGCAAG
GGGACCGGGTCGATCCTCAGCTTGCACACTCTGCCTCTCCGACCGACTGAGCACCCGCACACCCG
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAGGCTT
GTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACCTACGCATTAAGCCT
CTTCGCCCCGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
TAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCACCAGGATGAG
Found at i:29551940 original size:159 final size:159
Alignment explanation
Indices: 29551612--29552432 Score: 701
Period size: 159 Copynumber: 5.2 Consensus size: 159
29551602 CCACATCTAA
* ** * * *
29551612 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTT-TCGACAGCATGATCG
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGT-GGCAGCAGGACCG
** * * * * * ** *
29551674 ATAGCATGCAG-GGGGGACCGGGCTGATTCCCAGCTTGCACATTCTGCGTCTCCGACCGGCTGAG
63 GCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAAGCCTCTCCGACCGGCTGAG
* *
29551738 CACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
29551770 GTATAGGGAGTTCATTCCATATCTAAGCCCCAGCTGGACCGAGGCTTGTGGCAGCGGGACCGGTA
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCA
* * * * * * * *
29551835 GCATGCAGAGGGGGACTGGGTCGATCCCTGGCTTACGCATTAAGCCTCTTCGGCCGGCTCAGCGC
66 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAAGCCTCTCCGACCGGCTGAGCGC
* * *
29551900 CCGCACACTCGTTTCGTGGGTTGACTTAT
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** * * * * ***
29551929 GCATACAGAGTTCATTCC-TAGTCTAAG-ATCAGACCGGATCAAGGGTTGCGGCACCAGGATTAG
1 GCATAGGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGG
* * * *
29551992 CAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTA-CCTCTCCGACCGGTTGAG
64 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATT-AAGCCTCTCCGACCGGCTGAG
** * *
29552055 CGTGCGCACGCCCGTTTCGTGGGTTGGTTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **
29552087 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGTGGGACCGGCA
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCA
* * ** * *
29552152 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGC
66 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAAGCCTCTCCGACCGGCTGAGCGC
* *
29552217 CCGCACGCTCGTTTCATGGGTTGAG-TTAT
131 CCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* * ** * * * * * ** *
29552246 GCATACGGTGTTCATTTCCA-GTCTAAGATCGAACCAGACCGAAGGTTGTGGCAGTAGGATTGAC
1 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGC
* * * * * ** *
29552310 AGCACGCAGGGGGGGACTGGGCCAATCCCTGGTTTGCGCATTCTGCCTCTCCGACCGACTGAGCG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAAGCCTCTCCGACCGGCTGAGCG
*
29552375 CCAGCACAG-TCGTTTCGTGGGTTGGCTTAG
130 CCCGCAC-GCTCGTTTCGTGGGTTGGCTTAG
29552405 GCATAGGGAGTTCATTCCATGTCTAAGC
1 GCATAGGGAGTTCATTCCATGTCTAAGC
29552433 ATATGGAGTT
Statistics
Matches: 518, Mismatches: 129, Indels: 31
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 178 0.34
159 330 0.64
160 7 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCA
GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAAGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29552201 original size:317 final size:315
Alignment explanation
Indices: 29551612--29552432 Score: 1083
Period size: 317 Copynumber: 2.6 Consensus size: 315
29551602 CCACATCTAA
* * * * * *
29551612 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGACAGCATGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGACA
* * * * * *
29551677 GCATGCAGGGGGGACCGGGCTGATTCCCAGCTTGCACATTCTGCGTCTCCGACCGGCTGAGCACC
65 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC-GC
* *
29551742 CGCACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATATCTAAGCCCCAGCTGG
129 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
* * * * *
29551807 ACCGAGGCTTGTGGCAGCGGGACCGGTAGCATGCAGAGGGGGACTGGGTCGATCCCTGGCTTACG
194 ACCGAGGCTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACG
*
29551872 CATTAAGCCTCTTCGGCCGGCTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAT
259 CATTAAGCCTCTTCGGCCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAT
* * *
29551929 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCACCAGGATT-AGC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGA-C
* * *
29551993 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCGGTTGAGCGT
64 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG-
* *
29552058 GCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
128 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
* * * *
29552123 GACTGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGC
193 GACCGAGGCTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTAC
* * * * *
29552188 GCATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGAGTTAT
258 GCATTAAGCCTCTTCGGCCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAT
* * * *
29552246 GCATACGGTGTTCATTTCCAGTCTAAGATC-GAACCAGACCGAA-GGTTGTGGCAGTAGGATTGA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAG-ACCGGACC-AAGGGTTGCGGCAGCAGGATTGA
* * ** * *
29552309 CAGCACGCAGGGGGGGACTGGGCCAATCCCTGGTTTGCGCATTCTGCCTCTCCGACCGACTGAGC
63 CAGCACGCA-GGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
*
29552374 GCCAGCACAG-TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
127 GCC-GCAC-GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
29552433 ATATGGAGTT
Statistics
Matches: 438, Mismatches: 56, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
316 4 0.01
317 328 0.75
318 105 0.24
319 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGACAG
CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCG
CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
CGAGGCTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCA
TTAAGCCTCTTCGGCCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAT
Found at i:29553156 original size:26 final size:26
Alignment explanation
Indices: 29553126--29553178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29553116 GTTGCCTTAG
29553126 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29553152 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29553178 G
1 G
29553179 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29553675 original size:26 final size:26
Alignment explanation
Indices: 29553625--29553677 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29553615 GTTGGCTTAG
* *
29553625 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
29553651 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
29553677 G
1 G
29553678 ATCGGATCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:29554041 original size:26 final size:26
Alignment explanation
Indices: 29554004--29554056 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29553994 GTTGACTTAG
29554004 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
29554030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
29554056 G
1 G
29554057 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29554503 original size:158 final size:155
Alignment explanation
Indices: 29554030--29554531 Score: 496
Period size: 158 Copynumber: 3.2 Consensus size: 155
29554020 CCCAGTCTAA
29554030 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CTGGACCGAGGGTTACGGT-GACAGAATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATC-GGACCGAGGGTTACGGTAGA-AG-ATCG
* * * *
29554092 ACAGCACGTAGGGGGGATCGGGTCGATCCTCGG-TTAGCGCATTCTACC-TCTCCGACTGGCTGC
62 ACAGCACGTAGGGGGGA-CGGGTCGATCCTCGGCTT-GCGCATTCTGCCTTTTCGGAC-GGCTGA
* * *
29554155 GCACCGCACGCCCGTTTCGTGGGTTGGCTTAG
124 GCGCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** * **
29554187 GCATAGGGAGTTCATTCGATGTCTAAGCCCCAG-TCGGATCGAGGGTTACGGTAGTGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTACGGTAG-AAGATCGAC
* * * * * * * * * *
29554251 AGCACGCAGAAGGGGGTCGGGTCAATCCCCGGCTTCCGCATTATGCCTCTCCGGCCGGCTCAGCG
64 AGCACGTAG--GGGGGACGGGTCGATCCTCGGCTTGCGCATTCTGCCTTTTCGGACGGCTGAGCG
* *
29554316 CCCGCATGCTTGTTTCGTGGGTTGACTTAG
127 -CCGCATGCTCGTTTCGTGGGTTGGCTTAG
*
29554346 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTACGGTAG-AAGATCGAC
* * *
29554410 AGCACGTAGGGGGGACGGGGTCGATCCTCGGCTTGTGCATTCTGCCTTTTCGGTCGGCTGAGTGC
64 AGCACGTAGGGGGGAC-GGGTCGATCCTCGGCTTGCGCATTCTGCCTTTTCGGACGGCTGAGCGC
*
29554475 TCGCATGCTCGTTTCGTTGGTTGGCTTAG
128 -CGCATGCTCGTTTCGTGGGTTGGCTTAG
*
29554504 GCATACAGAGTTCATTCCATGTCTAAGA
1 GCATACGGAGTTCATTCCATGTCTAAGA
29554532 ATACGGAGTT
Statistics
Matches: 273, Mismatches: 57, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 59 0.22
158 122 0.45
159 88 0.32
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGAAGATCGACAG
CACGTAGGGGGGACGGGTCGATCCTCGGCTTGCGCATTCTGCCTTTTCGGACGGCTGAGCGCCGC
ATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29554542 original size:26 final size:26
Alignment explanation
Indices: 29554506--29554557 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29554496 TGGCTTAGGC
29554506 ATACAGAGTTCATT-CCATGTCTAAGA
1 ATACAGAGTTCATTCCCA-GTCTAAGA
*
29554532 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
29554558 TCGGACCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:29554886 original size:26 final size:26
Alignment explanation
Indices: 29554856--29554908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29554846 GTTAACTTAG
29554856 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
29554882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29554908 G
1 G
29554909 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29554888 original size:878 final size:856
Alignment explanation
Indices: 29553126--29555659 Score: 2564
Period size: 878 Copynumber: 2.9 Consensus size: 856
29553116 GTTGCCTTAG
*
29553126 GCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGA
1 GCATAC-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGA
** *
29553190 CCGAGGGTTACAACAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCA
64 CCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCGG-TTGCGCA
* * * * * * * * * *
29553255 TTCTACCTTTTCGGTCGGTTGAGCACCCGCATGCCCATTTTGTGGGTTGCCTTAGGCGTAGGGAG
128 TTCTACCTCTCCGATCGGCTGCGCA-CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
* * **
29553320 TTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTATGGTAACGGGACCGACAGCACGCAGAG
192 TTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTATGGTAGCGGGACCGGTAGCACGCAGAG
* *
29553385 GGGGACCGGGTCGATCCTCGGCTTACGTATTATGCCTCTTCGACCGGCTCAGCGCCGGCACGCTC
257 GGGGA-CGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTC
* * * * * * *
29553450 ATTTCGTGGGTTGACTTGGGCTTACGAAAG-TCATTTTGAGTCTAAGATCGA-CCGAACCGAGGG
321 GTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCTCAGTCTAAGATCGATCAG-ACCGAGGG
* * * * * *
29553513 TTACGGTAGCATGATCGATAGCACGCAGGGGGGATCCGATCGATCCCAGCTTGCCCATTCTACCT
384 TTACGGTAGCAAGATCGATAGCACGTAGGGGGGA-CGGGTCGATCCCGGCTTGCGCATTCTACCT
* * ** ** *
29553578 CTCCTACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
448 TTTCGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * *
29553643 ATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGATCACACCAAGGGTTGCGGCAGCAG
513 ATGTCTAAGCATACGGAGTTCATTCCC-ATCTAAGATCGGATCAGA-CGAGGGTTGCGGTAGCAG
** ** * * * *
29553708 GACCAGTAATAGGATCGGCAGCACGCAGGGGGGATTGGGCCGGTCCCCAACTTGCGCATTCTGCC
576 GACCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTACGCATTCTGCC
* * * * * * * *
29553773 TCTCCGGCAGACTGAGCACCCGCACGCCTGTTTTATGGGTTGGCTTAGGCATACGGATTTCATTC
641 TTTCC-ACCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
29553838 CATGTCTAA-CCCCAGTCGGACTGAGGGTTGTGACAGTAGGATCGGTAGCTGGATCGGCAGCACG
705 CATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGTAGCTGGAGCGGCAGCACG
* ** ** *
29553902 CAGAGGGGGACCAGGTTGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCCTCTCCGACCAG
770 CAGA-GCGGACCAGGTTGATCCCTGGCTTGAACATTATGCCGATCCGATCGGCCGCTCCGACCAG
* *
29553967 CTGAGCACCCGTACCCTCGTTTTGTGGGTTGACTTA
834 CTGAGCACCCGTA---AC----T-T-AG--G-C-TA
29554003 GGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
1 -GCATACG-AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
* * * *
29554068 CCGAGGGTTACGG-TGACAGAATCGACAGCACGTAGGGGGGATCGGGTCGATCCTCGGTTAGCGC
64 CCGAGGGTTACGGCAG-CAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCGGTT-GCGC
29554132 ATTCTACCTCTCCGA-CTGGCTGCGCACCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
127 ATTCTACCTCTCCGATC-GGCTGCGCACCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
* * *
29554196 GTTCATTCGATGTCTAAGCCCCAGTCGGATCGAGGGTTACGGTAGTGGGACCGGTAGCACGCAGA
191 GTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTATGGTAGCGGGACCGGTAGCACGCAG-
* * * * * * *
29554261 AGGGGGTCGGGTCAATCCCCGGCTTCCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCATGCT
255 AGGGGGACGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCT
* *
29554326 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGG
320 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATC-GATCAGACCGAGGG
* * *
29554391 TTACGGTAGCAAGATCGACAGCACGTAGGGGGGACGGGGTCGATCCTCGGCTTGTGCATTCTGCC
384 TTACGGTAGCAAGATCGATAGCACGTAGGGGGGAC-GGGTCGATCC-CGGCTTGCGCATTCTACC
* * * * * *
29554456 TTTTCGGTCGGCTGAGTGCTCGCATGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTC
447 TTTTCGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
29554521 CATGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGATTGTGGTAGCA
512 CATGTCTAAGCATACGGAGTTCATTCCCA-TCTAAGATCGGATCAGA-CGAGGGTTGCGGTAGCA
* * * ** **
29554586 GGACCAGTAGCAGGATCGACAGCACGTA-GGGGGACCGGGTTGATCCCTGGCTTACGCATTCTAT
575 GGACCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTACGCATTCTGC
* *
29554650 CTTTCCATCCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT
640 CTTTCCA-CCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
29554715 CCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAGGACCGGTAG-TGG-GCTG-ATC-C
704 CCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGTAGCTGGAGCGGCAGCAC
* ** * * * * *
29554776 -CCGA-CTTACGCA-TTATGCCTCTCTGGC-TGAAC-TT-T-TCGAT-CGATTGAG-CGC-CCGT
769 GCAGAGCGGAC-CAGGT-TG-ATCCCTGGCTTGAACATTATGCCGATCCGATCG-GCCGCTCCG-
** ***
29554831 A-C-GCTCGTTTCATGGGTTAACTTA-G---
829 ACCAGCT-G-AGCACCCG-TAACTTAGGCTA
*
29554856 GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGAC
1 GCATAC-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
* * * * * * * * *
29554921 CGAGGGTTGCGGCAGTAGGATCGATAGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGCTCAT
65 CGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTC-GGTTGCGCAT
* * * * *
29554986 TCTGCCTCTCCGATCGACTGAGCGC-CCGCACTCCTGTTTCATGGGTTGGCTTAGGCATAGGGAG
129 TCTACCTCTCCGATCGGCT--GCGCACCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
* * * * * *
29555050 TTCATTCCATGTCTAAGCCCCTGTCAGA-CTGAGGGTTGTGGCAGCGAGACCGGTAGCATGCAGA
192 TTCATTCCATGTCTAAGCCCCAGTCGGATC-GAGGGTTATGGTAGCGGGACCGGTAGCACGCAGA
* * * *
29555114 GGGGGACTGGG-CTGATCCTCGACTTGCGCATTATGCCTCTTCAACCGGCTCAGCG-CC-TACGC
256 GGGGGAC-GGGTC-GATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGC
* * * * * *
29555176 TCGTTTCATGGGTTGACTTAGGCATAC-GAGTTTATTCTCAGTCTAAGATTGGATCGGATCAAGG
319 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGA-TCGATCAGACCGAGG
** * **** * * *
29555240 GTTGTGGTAACAAGATCGATAGTTTATAGGTGGGACCGGGCCGATCCCCGACTTGCGCATTCTAC
383 GTTACGGTAGCAAGATCGATAGCACGTAGGGGGGA-CGGGTCGAT-CCCGGCTTGCGCATTCTAC
* * * * *
29555305 C-TCTCTGGCCAGTTGAATGCCCGCACGCTTGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCAT
446 CTTTTC-GGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
*
29555369 TCCATGTCTAAGCATACAGAGTTCATTCCCATCTAAGATC-GATCAGACTGAGGGTTGCGGTAGC
510 TCCATGTCTAAGCATACGGAGTTCATTCCCATCTAAGATCGGATCAGAC-GAGGGTTGCGGTAGC
* * * *
29555433 AGGACCAGCAGCAGGATCGGTAGCACGCAGGGGGGACCGAGCTGATCCCCAGCTTACGCATTTTG
574 AGGACCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTACGCATTCTG
* *
29555498 CCTTTCCGACCGGCTGAGCGCCCGCAGGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
639 CCTTTCC-ACCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * ** *
29555563 TCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGTAGGACCGATAGCAGAATTGGTAGCA
703 TCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGTAGCTGGAGCGGCAGCA
* * *
29555628 CGCAGAGGGGGACCGGGTTGATCCCCGGCTTG
768 CGCAGA-GCGGACCAGGTTGATCCCTGGCTTG
29555660 CGCATTCTGC
Statistics
Matches: 1368, Mismatches: 241, Indels: 117
0.79 0.14 0.07
Matches are distributed among these distances:
847 1 0.00
848 43 0.03
849 144 0.11
850 156 0.11
851 33 0.02
852 136 0.10
853 133 0.10
854 13 0.01
855 5 0.00
856 3 0.00
858 1 0.00
862 1 0.00
863 1 0.00
867 4 0.00
868 5 0.00
869 11 0.01
870 5 0.00
871 1 0.00
872 5 0.00
873 7 0.01
874 10 0.01
875 1 0.00
876 4 0.00
877 187 0.14
878 278 0.20
879 180 0.13
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (856 bp):
GCATACGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
GAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCGGTTGCGCATTC
TACCTCTCCGATCGGCTGCGCACCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTATGGTAGCGGGACCGGTAGCACGCAGAGGGGG
ACGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGATCAGACCGAGGGTTACGGT
AGCAAGATCGATAGCACGTAGGGGGGACGGGTCGATCCCGGCTTGCGCATTCTACCTTTTCGGCC
GGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCATACGGAGTTCATTCCCATCTAAGATCGGATCAGACGAGGGTTGCGGTAGCAGGACCAGTAGC
AGGATCGGCAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTACGCATTCTGCCTTTCCACCGG
CTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGTAGCTGGAGCGGCAGCACGCAGAGCGGACC
AGGTTGATCCCTGGCTTGAACATTATGCCGATCCGATCGGCCGCTCCGACCAGCTGAGCACCCGT
AACTTAGGCTA
Found at i:29555089 original size:341 final size:346
Alignment explanation
Indices: 29554481--29555105 Score: 836
Period size: 341 Copynumber: 1.8 Consensus size: 346
29554471 GTGCTCGCAT
* * ** *
29554481 GCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGAATACGGAGTTCATT
1 GCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCATGTCTAAGAATACGGAGTTCATT
* * *
29554546 CCCAGTCTAAGATCGGACCGGATCGAGGATTGTGGTAGCAGGACCAGTAGCAGGATCGACAGCAC
66 CCCAGTCTAAGATCAGACAGGACCGAGG--TGT-GTAGCAGGA-CAGTA--AGGATCGACAGCAC
* * ** ** * * * *
29554611 GTAGGGGGACCGGGTTGATCCCTGGCTTACGCATTCTATCTTTCCATCCGGCTGAGTGCCCGCAC
125 GAAGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCATCCGACTGAGCGCCCGCAC
*
29554676 GCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGA
190 GCCTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGA
29554741 GGGTTGTGGCAGC-AGGACCGGTAGTGGGCTGATCCCCGACTTACGCATTATGCCTCTCTGGCTG
255 GGGTTGTGGCAGCGA-GACCGGTAGTGGGCTGATCCCCGACTTACGCATTATGCCTCTCTGGCTG
29554805 AACTTTTCGATCGATTGAGCGCCCGTAC
319 AACTTTTCGATCGATTGAGCGCCCGTAC
*
29554833 GCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCAT
1 GCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGAATACGGAGTTCAT
*
29554897 TCCCAGTCTAAGATCAGACAGGACCGAGG-GT-T-GC-GG-CAGT-AGGATCGATAGCACGCAAG
65 TCCCAGTCTAAGATCAGACAGGACCGAGGTGTGTAGCAGGACAGTAAGGATCGACAGCACG-AAG
* * * *
29554956 GGGGACCAGGCCGATCCCCAGCTTGCTCATTCTGCCTCTCCGAT-CGACTGAGCGCCCGCACTCC
129 GGGGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCC-ATCCGACTGAGCGCCCGCACGCC
** * *
29555020 TGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCTGTCAGACTGAGGG
193 TGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGG
29555085 TTGTGGCAGCGAGACCGGTAG
258 TTGTGGCAGCGAGACCGGTAG
29555106 CATGCAGAGG
Statistics
Matches: 240, Mismatches: 29, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
340 14 0.06
341 129 0.54
342 3 0.01
343 4 0.02
345 2 0.01
346 2 0.01
347 1 0.00
349 2 0.01
352 80 0.33
353 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (346 bp):
GCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCATGTCTAAGAATACGGAGTTCATT
CCCAGTCTAAGATCAGACAGGACCGAGGTGTGTAGCAGGACAGTAAGGATCGACAGCACGAAGGG
GGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCATCCGACTGAGCGCCCGCACGCCTGT
TTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTG
TGGCAGCGAGACCGGTAGTGGGCTGATCCCCGACTTACGCATTATGCCTCTCTGGCTGAACTTTT
CGATCGATTGAGCGCCCGTAC
Found at i:29555679 original size:171 final size:170
Alignment explanation
Indices: 29555418--29555746 Score: 480
Period size: 171 Copynumber: 1.9 Consensus size: 170
29555408 CGATCAGACT
*
29555418 GAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTAGCACGCAGGGGGGACCGAGCTGATCCCC
1 GAGGGTTGCGGTAGCAGGACCAGCAGCAGAATCGGTAGCACGCAGGGGGGACCGAGCTGATCCCC
* * * * ** *
29555483 AGCTTACGCATTTTGCCTTTCCGACCGGCTGAGCGCCCGCAGGCTCGTTTCATGGGTTGGCTTAG
66 AGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGACCGCACACTCATTTCATGGGTTGGCTTAG
29555548 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
131 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
* * * * * *
29555588 GAGGGTTGTGGTAGTAGGACC-GATAGCAGAATTGGTAGCACGCAGAGGGGGACCGGGTTGATCC
1 GAGGGTTGCGGTAGCAGGACCAG-CAGCAGAATCGGTAGCACGCAG-GGGGGACCGAGCTGATCC
* * *
29555652 CCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGGGACCGCACACTCATTTCATGGGTTGGCTT
64 CCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGACCGCACACTCATTTCATGGGTTGGCTT
29555717 AGGCATACGGAGTTCATTCCATGTCTAAGC
129 AGGCATACGGAGTTCATTCCATGTCTAAGC
29555747 ATATAGTGTT
Statistics
Matches: 140, Mismatches: 17, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
169 1 0.01
170 38 0.27
171 101 0.72
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (170 bp):
GAGGGTTGCGGTAGCAGGACCAGCAGCAGAATCGGTAGCACGCAGGGGGGACCGAGCTGATCCCC
AGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGACCGCACACTCATTTCATGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
Found at i:29555749 original size:26 final size:26
Alignment explanation
Indices: 29555719--29555771 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29555709 GTTGGCTTAG
*
29555719 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
29555745 GCATATAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29555771 G
1 G
29555772 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29556284 original size:26 final size:26
Alignment explanation
Indices: 29556248--29556300 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29556238 GTTGACTTAG
*
29556248 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
29556274 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
29556300 G
1 G
29556301 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:29556647 original size:170 final size:168
Alignment explanation
Indices: 29556337--29556647 Score: 382
Period size: 170 Copynumber: 1.8 Consensus size: 168
29556327 ACAGGATCAA
* * *
29556337 CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGTCGAGTGC
1 CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGACGAGCGC
* * * *
29556402 TTGCACGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
66 TCGCACGCCTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCG
29556467 GACCGAGGGTTGTGGTAGCAGGACCGGTAACGGGATCG
131 GACCGAGGGTTGTGGTAGCAGGACCGGTAACGGGATCG
* * *
29556505 CAGCACGCAGAGGGGGACCGGGCTGATCCCC-GACTTGCGCATTATGCCTCTCCCG-TCGACTGA
1 CAGCACGCAG-GGGGGACCGGGCCGATCCCCAG-CTTGCGCATTATACCTCT-CCGACCGAC-GA
* * * *
29556568 GCGCTCGCACGCTCGT-TTT-GTTGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAGGAT
62 GCGCTCGCACGC-C-TATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGAC
29556630 C-AGACCGGACCGAGGGTT
124 CTAG-CCGGACCGAGGGTT
29556648 ACGGCAGCAG
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
168 11 0.09
169 41 0.34
170 64 0.53
171 4 0.03
172 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (168 bp):
CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGACGAGCGC
TCGCACGCCTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCG
GACCGAGGGTTGTGGTAGCAGGACCGGTAACGGGATCG
Found at i:29557863 original size:91 final size:91
Alignment explanation
Indices: 29557701--29557881 Score: 220
Period size: 91 Copynumber: 2.0 Consensus size: 91
29557691 AGCACGCAGA
* * * * *
29557701 GGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTCGCTCAGCGCCCGTACGCT
1 GGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGCTAAGCGCCCGCACGCT
*
29557766 CGTTTCGTAGGTTGACTTAGGCATAG
66 CATTTCGTAGGTTGACTTAGGCATAG
* * * * * *
29557792 GGGGGACCGGGCC-AGTCCCCGGCTTACGCATTCTGCCTCTTCGATTGGCTAAGTGCCCGCATGC
1 GGGGGACCGGGCCGA-TCCCCGGCTTACGCATTATGCCTCTCCGACTCGCTAAGCGCCCGCACGC
* *
29557856 TCATTTCGTGGGTTGGCTTAGGCATA
65 TCATTTCGTAGGTTGACTTAGGCATA
29557882 CGGAGTTCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
90 1 0.01
91 74 0.99
ACGTcount: A:0.13, C:0.30, G:0.31, T:0.25
Consensus pattern (91 bp):
GGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGCTAAGCGCCCGCACGCT
CATTTCGTAGGTTGACTTAGGCATAG
Found at i:29558611 original size:26 final size:26
Alignment explanation
Indices: 29558575--29558627 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29558565 TTTGGCTTAG
29558575 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATATGGAGTTCATTCCTA-GTCTAA
29558601 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
29558627 G
1 G
29558628 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCTAGTCTAA
Found at i:29559630 original size:159 final size:159
Alignment explanation
Indices: 29559364--29559812 Score: 386
Period size: 159 Copynumber: 2.8 Consensus size: 159
29559354 TTGTGATAGT
** * * * * * * * *
29559364 AGGATCGGTAGCACGCAGAGGGGATCAGGTCGATTCTCGACTTGCGCATTCTGCCTCTCCGACCG
1 AGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGCCTTGCGCATTATGCCTCTCCGATCG
* * * ** * * * * * * *
29559429 GCTGAGCGCCGGCATGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAG
66 GCTCAACGCCAGCACACTCATCTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
29559494 CCCCAG-CC-GAACCGAGGGTTGCGACAAC
131 CACCAGACCAG-ACAGAAGGTTGCGACAAC
*
29559522 GGGATCGACAGCACGCAGAGGGGGACCGGG-CTGATCCCCGCCTTGCGCATTATGCCTCTCCGAT
1 AGGATCGACAGCACGCAG-GGGGGACCGGGTC-GATCCCCGCCTTGCGCATTATGCCTCTCCGAT
* * * * *
29559586 CGGCTCAATGCCCGCACGCTCATCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCT
64 CGGCTCAACGCCAGCACACTCATCTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
* * * * *
29559650 AAG-ATCAGATCAGACAGAAGGTTGTGGCAGC
128 AAGCACCAGACCAGACAGAAGGTTGCGACAAC
** * * * **
29559681 AGGATCGACAGCACGCAGGGGGGATTGGGTCGATCTCCGGCTTGCGCATTCTGCCTCTCCTTTCG
1 AGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGCCTTGCGCATTATGCCTCTCCGATCG
* * * * * *
29559746 GTTGAGCGCCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTCAACGCCAGCACACTCATCTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
29559811 CA
131 CA
29559813 TACGGAGTTC
Statistics
Matches: 231, Mismatches: 52, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 107 0.46
159 117 0.51
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGCCTTGCGCATTATGCCTCTCCGATCG
GCTCAACGCCAGCACACTCATCTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CACCAGACCAGACAGAAGGTTGCGACAAC
Found at i:29559789 original size:158 final size:156
Alignment explanation
Indices: 29559309--29559810 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 156
29559299 CCCAGTCTAA
* * * **
29559309 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGACTGGATCGAGGGTTGTGATAGTAGGATCGGT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGAC-AGA-CGAGGGTTGTGACAGCAGGATCGAC
* * *
29559373 AGCACGCAGAGGGGATCAGGTCGAT-TCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
63 AGCACGCAGGGGGGATCGGGTCGATCTC-CGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * * *
29559437 CCGGCATGCCCGTTTCGTTGGTTGGCTTAG
127 CCAGCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * * *
29559467 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGCGACAACGGGATCGAC
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGACAG-A-CGAGGGTTGTGACAGCAGGATCGAC
* * * * * **
29559531 AGCACGCAGAGGGGGACCGGG-CTGATCCCCGCCTTGCGCATTATGCCTCTCCGATCGGCTCAAT
63 AGCACGCAG-GGGGGATCGGGTC-GATCTCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * * * *
29559595 GCCCGCACGCTCATCTCATGGGTTGACTTAG
126 GCCAGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
29559626 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAGACAGAAGGTTGTGGCAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGA-CAGAC-GAGGGTTGTGACAGCAGGATCGAC
* * ** *
29559690 AGCACGCAGGGGGGATTGGGTCGATCTCCGGCTTGCGCATTCTGCCTCTCCTTTCGGTTGAGCGC
63 AGCACGCAGGGGGGATCGGGTCGATCTCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
*
29559755 CAGCACACTCGTTTCGTGGGTTGGCTTAG
128 CAGCACGCTCGTTTCGTGGGTTGGCTTAG
*
29559784 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
29559811 CATACGGAGT
Statistics
Matches: 271, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 144 0.53
159 117 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACAGACGAGGGTTGTGACAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGTCGATCTCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCAG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29559820 original size:26 final size:26
Alignment explanation
Indices: 29559784--29559836 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29559774 GTTGGCTTAG
29559784 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29559810 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29559836 G
1 G
29559837 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29560106 original size:171 final size:170
Alignment explanation
Indices: 29559810--29560179 Score: 401
Period size: 171 Copynumber: 2.2 Consensus size: 170
29559800 CCATGTCTAA
* * ** *
29559810 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACC-AGACTGAGGGTTGTGGTAGCAGGACCAA
1 GCATACAGAGTTCATCCCCAGTCTAAGCCCCA-ACCGA-ACTGAGGGTTGTGGCAGCAGGACCAA
* * * * *
29559873 TAGCAGGATCGGCAGCACACAGGGGAAGATCGGGCCGATCCCCTACTTGCACATTCTGCCTCTCC
64 CAGCAGGATCGACAGCACACAGGGGAAGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCC
* * *
29559938 GACT-GGCTGACTGC-CCGCACGCTCGTTTCGTGGGTTGCCTTAG
129 G-CTCGACTGA--GCACCGCACGCTCATTTCGTGGGTTGACTTAG
* * **
29559981 GCATACAGAGTTCAT-TCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGTAGGACCGGC
1 GCATACAGAGTTCATCCCCA-GTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGCAGGACCAAC
* * * * *
29560045 AGCGGGATCGACAGCACATAGAGGG-GGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCC
65 AGCAGGATCGACAGCACACAG-GGGAAGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCC
* *
29560109 GGTCGACTGAGCATCCGCACGCTCATTTTGTGGGTTGACTTAG
129 GCTCGACTGAGCA-CCGCACGCTCATTTCGTGGGTTGACTTAG
*
29560152 GCATACGGAGTTCATCCCCAGTCTAAGC
1 GCATACAGAGTTCATCCCCAGTCTAAGC
29560180 ATATGGAATT
Statistics
Matches: 166, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
169 2 0.01
170 4 0.02
171 151 0.91
172 9 0.05
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (170 bp):
GCATACAGAGTTCATCCCCAGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGCAGGACCAACA
GCAGGATCGACAGCACACAGGGGAAGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGC
TCGACTGAGCACCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:29560191 original size:26 final size:26
Alignment explanation
Indices: 29560152--29560202 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29560142 GTTGACTTAG
*
29560152 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* *
29560178 GCATATGGAATTCATTCCCAGTCTA
1 GCATACGGAATTCATCCCCAGTCTA
29560203 TCATCAGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:29560286 original size:355 final size:346
Alignment explanation
Indices: 29559504--29560520 Score: 991
Period size: 355 Copynumber: 2.9 Consensus size: 346
29559494 CCCCAGCCGA
* * * * *
29559504 ACCGAGGGTTGCGACAACGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGCCTTGCG
1 ACCGAGGGTTACGACAACAGGATCGGCAGCACG-ACAGGGGGACCGGGCTGATCCCCGACTTGCG
* * * * *
29559569 CATTATGCCTCTCCGATCGGCTCAATGCCCGCACGCTCATCTCATGGGTTGACTTAGGCATACAG
65 CATTCTGCCTCTCCGATCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
** * *
29559634 AGTTCATTCCCA-GTCTAAG-ATCAGATC-AGACAGAAGGTTGTGGC--A--GCA-GGATCGACA
130 AGTTCATT-CCATGTCTAAGCCCCA-ACCGA-ACAGAGGGTTGTGGCAGACGGCACGGATCGACA
** * * * * *
29559691 GCACGCAG-GGGGGATTGGG-TCGATCTCCGGCTTGCGCATTCTGCCTCTCCTTTCGGTTGAGCG
192 GCACATAGAGGGGGACTGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCTGTCGGCTGAGC-
* * * *
29559754 CCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
255 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGGA
* *
29559819 GTTCATTCCCAGTCTAAGATCAGACCAG
319 ATTCATTCCCAGTCTAACATCAGACCAG
* * *
29559847 ACTGAGGGTTGTGGTAGCAGGACCAATAGCAGGATCGGCAGCAC-ACAGGGGAAGATCGGGCCGA
1 ACCGA-GG--GT--TA-C--GA-C-A-A-CAGGATCGGCAGCACGACAGGGG--GACCGGGCTGA
* * *
29559911 TCCCCTACTTGCACATTCTGCCTCTCCGA-CTGGCTGACTGCCCGCACGCTCGTTTCGTGGGTTG
52 TCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGAATGCCCGCACGCTCGTTTCGTGGGTTG
* *
29559975 CCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGTAGGA
116 ACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGAACAGAGGGTTGTGGC---A-GA
* *
29560040 CCGGCAGCGGGATCGACAGCACATAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCT
177 -CGGCA-C-GGATCGACAGCACATAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCT
* * * * *
29560105 CTCCGGTCGACTGAGCATCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCC
239 CTCCTGTCGGCTGAGC-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CC
* * *
29560170 CAGTCTAAGCATATGGAATTCATTCCCAGTCTATCATCAGACTAG
302 CAGTCTAAGCATACGGAATTCATTCCCAGTCTAACATCAGACCAG
* *
29560215 ACCGAGGGTTACGACAACAGGATCGGTAGCACGTA-AGGGGGACCGGGCTGATCCCCGGCTTGCG
1 ACCGAGGGTTACGACAACAGGATCGGCAGCACG-ACAGGGGGACCGGGCTGATCCCCGACTTGCG
* * * * * **
29560279 CATTCTGCCTCTACGATCGGCTGAGTGCCC-CTATGCCCGTTTTGTGGGTTGTTTTAGGCATA-A
65 CATTCTGCCTCTCCGATCGGCTGAATGCCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * *
29560342 GGAGTTCATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTTGT-GCAG-CGGGACCGG-TAG-CA
129 -GAGTTCATTCCATGTCTAAGCCCCAACCGAACAGAGGGTTGTGGCAGACGGCA-CGGATCGACA
* * *
29560403 -CACAT--AGGGGGACTGGGCTGATCCCCGGCTTGCCCATTATGCCTCT-CTGTCCGGCTCAGTG
192 GCACATAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGT-CGGCTGAG-C
29560464 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
255 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
29560521 ATCAGACCGG
Statistics
Matches: 558, Mismatches: 75, Indels: 83
0.78 0.10 0.12
Matches are distributed among these distances:
341 3 0.01
342 96 0.17
343 5 0.01
344 7 0.01
345 2 0.00
346 4 0.01
347 2 0.00
348 6 0.01
349 1 0.00
350 1 0.00
351 3 0.01
352 1 0.00
353 7 0.01
354 9 0.02
355 228 0.41
356 18 0.03
357 6 0.01
358 2 0.00
359 1 0.00
360 2 0.00
361 1 0.00
362 1 0.00
363 2 0.00
364 3 0.01
365 2 0.00
367 17 0.03
368 124 0.22
369 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (346 bp):
ACCGAGGGTTACGACAACAGGATCGGCAGCACGACAGGGGGACCGGGCTGATCCCCGACTTGCGC
ATTCTGCCTCTCCGATCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAACCGAACAGAGGGTTGTGGCAGACGGCACGGATCGACAGCAC
ATAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGTCGGCTGAGCCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAATTCATT
CCCAGTCTAACATCAGACCAG
Found at i:29560538 original size:158 final size:158
Alignment explanation
Indices: 29560178--29560543 Score: 384
Period size: 158 Copynumber: 2.3 Consensus size: 158
29560168 CCCAGTCTAA
* * ** ** * *
29560178 GCATATGGAATTCATTCCCAGTCTATCATCAGACTAGACCGAGGGTTACGACAACAGGATCGGTA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACGACAACAGGACCGGTA
** * * *
29560243 GCACGTAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTACGATCGGCTGAGTGCC
66 GCACACAAGGGGGACCGGGCTGATCCCCGGCTTGCCCATTATGCCTCTACGATCGGCTCAGTGCC
* * **
29560308 CCTATGCCCGTTTTGTGGGTTGTTTTAG
131 CCTACGCCCGTTTCGTGGGTTGACTTAG
** * ** * *
29560336 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAACAGAGGGTTGTG-CAGCGGGACCGG
1 GCATAAGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACAGAGGGTTACGACAACAGGACCGG
*
29560398 TAGCACACATAGGGGGACTGGGCTGATCCCCGGCTTGCCCATTATGCCTCT-CTG-TCCGGCTCA
64 TAGCACACA-AGGGGGACCGGGCTGATCCCCGGCTTGCCCATTATGCCTCTAC-GAT-CGGCTCA
*
29560461 GTGCCCGC-ACGCTCGTTTCGTGGGTTGACTTAG
126 GTGCCC-CTACGCCCGTTTCGTGGGTTGACTTAG
* *
29560494 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACG
29560544 GCAGTAGGAT
Statistics
Matches: 167, Mismatches: 33, Indels: 16
0.77 0.15 0.07
Matches are distributed among these distances:
157 24 0.14
158 136 0.81
159 7 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTACGACAACAGGACCGGTA
GCACACAAGGGGGACCGGGCTGATCCCCGGCTTGCCCATTATGCCTCTACGATCGGCTCAGTGCC
CCTACGCCCGTTTCGTGGGTTGACTTAG
Found at i:29560709 original size:868 final size:874
Alignment explanation
Indices: 29559064--29560876 Score: 2143
Period size: 868 Copynumber: 2.1 Consensus size: 874
29559054 CGGCCAATTG
* * * *
29559064 AGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAAGCACACGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * *
29559129 AATCAGACCGAGGGTTTTGGCAGTAGGACTAGCAACGGGATCGACAGCACGAAGAGGGGGACCGG
66 AACCAGACCGAGGGTTGTGGCAGTAGGACCAGCAACGGGATCGACAGCACGAAGAGGGGGACCGG
* * * ** *
29559194 ATTGATCCTCGGCTTACGCATTATGACTCTCCAACCGGCCTCCTCCGGTCGGTTGAGCACCCATA
131 ACTGATCCCCGACTTACGCATTATGA--CT-----C-GCCTCCTCCGGTCGACTGAGCACCCACA
* * *
29559259 CCCTCGTTTCGTGGGTTGACTTAGGCATACGGTGTTCACCCCCAGTCTAAGCATACAGAGTTCAT
188 CCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAAGCATACAGAATTCAT
* * * * ** * ** * *
29559324 TCCTAGTCTAAGATCAGACTGGATCGAGGGTTGTGATAGTAGGATCGGTAGCACGCAGAGGGGAT
253 TCCCAGTCTAACATCAGACTAGACCGAGGGTTACGACAACAGGATCGGTAGCACGAAGAGGGGAC
* * * *
29559389 CAGGTCGATTCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCGGCATGCCCGTTTCG
318 CAGGTCGATCCCCGACTTGCGCATTCTGCCTCTACGACCGGCTGAGCGCCGCCATGCCCGTTTCG
* * * *
29559454 TTGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGCGAC
383 TGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTTGCGAC
* * *
29559519 AACGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGCCTTGCGCATTATGCCTCTCCG
448 AACGGGACCGACAGCACACAGAGGGGGACCGGGCTGATCCCCGCCTTGCCCATTATGCCTCTCCG
29559584 ATCGGCTCAATGCCCGCACGCTCATCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
513 ATCGGCTCAATGCCCGCACGCTCATCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* ** * * * **
29559649 TAAGATCAGATCAGACAGAAGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATTGGGTCGA
578 TAAGATCAGACCAGACAGAAGGTTACGGCAGCAGGATCGACAGAACACAGGAGGGATCAGGTCGA
*** * * *
29559714 TCTCCGGCTTGCGCATTCTGCCTCTCCTTTCGGTTGAGCGCCAGCACACTCGTTTCGTGGGTTGG
643 TCTCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAACGCCAGCACACTCATTTCGTGGGTTGG
* * *
29559779 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
708 CTTAGGCATACAGAGTTCATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* ** ** * * * * *
29559844 C-AGACTGAGGGTTGTGGTAGCAGGACCAATAGCAGGATCGGCAGCACAC-AGGGGAAGATCGGG
773 CGA-ACAGAGGGTTACGACAGCAGGACCAACAGCAGGATCGACAGCACACAAAGGG--GACCGAG
* *
29559907 CCGATCCCC-TACTTGCACATTCTGCCTCTCCGACTGGCTG
835 CCGATCCCCGGA-TTGCACATTCTGCCTCTCCGACTGGCTA
* *
29559947 A-CTGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC
1 AGC-GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * *
29560011 CAACC-GAACTGAGGGTTGTGGCAGTAGGACCGGCAGCGGGATCGACAGCAC-ATAGAGGGGGAC
65 CAACCAG-ACCGAGGGTTGTGGCAGTAGGACCAGCAACGGGATCGACAGCACGA-AGAGGGGGAC
* * * * *
29560074 CGGGCTGATCCCCGACTTGCGCA-T-T-A-T-GCCT-CTCCGGTCGACTGAGCATCCGCACGCTC
128 CGGACTGATCCCCGACTTACGCATTATGACTCGCCTCCTCCGGTCGACTGAGCACCCACACCCTC
* * **
29560133 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAATTCATTCCCA
193 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAAGCATACAGAATTCATTCCCA
*
29560198 GTCTATCATCAGACTAGACCGAGGGTTACGACAACAGGATCGGTAGCACGTAAG-GGGGACC-GG
258 GTCTAACATCAGACTAGACCGAGGGTTACGACAACAGGATCGGTAGCACG-AAGAGGGGACCAGG
* * * * *
29560261 GCTGATCCCCGGCTTGCGCATTCTGCCTCTACGATCGGCTGAGTGCC-CCTATGCCCGTTTTGTG
322 TC-GATCCCCGACTTGCGCATTCTGCCTCTACGACCGGCTGAGCGCCGCC-ATGCCCGTTTCGTG
** * *
29560325 GGTTGTTTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTTGTG-CAG
385 GGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTTGCGACAA
** * * * *
29560389 CGGGACCGGTAGCACACATAGGGGGACTGGGCTGATCCCCGGCTTGCCCATTATGCCTCTCTG-T
450 CGGGACCGACAGCACACAGAGGGGGACCGGGCTGATCCCCGCCTTGCCCATTATGCCTCTCCGAT
* * * * *
29560453 CCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
515 -CGGCTCAATGCCCGCACGCTCATCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * * * * *
29560518 AAGATCAGACCGGACTGAGGGTTACGGCAGTAGGATCGATAGAACACAGGAGGGATCAGGTCGGT
579 AAGATCAGACCAGACAGAAGGTTACGGCAGCAGGATCGACAGAACACAGGAGGGATCAGGTCGAT
* * * * *
29560583 C-CCTGGCTTGCGCATTCTGCCTTTTCGACCGGCTGAATGCCCGCA-AGCTCATTTTGTGGGTTG
644 CTCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAACGCCAGCACA-CTCATTTCGTGGGTTG
* *
29560646 GCTTAGGCATATAGAGTTGATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
707 GCTTAGGCATACAGAGTTCATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
29560711 CCGAACAGAGGGTTACGACAGTAGGACTAGCGGTAGGATTGATAGCACACAAAGGGGACCGAGTC
772 CCGAACAGAGGGTTACGACAGCAGGACCAACAGCAGGATCGACAGCACACAAAGGGGACCGAGCC
** *
29560776 GATCCCCGGATTGTGCATTCTGCCTCTCCGGCTGGCTA
837 GATCCCCGGATTGCACATTCTGCCTCTCCGACTGGCTA
* * *
29560814 AGCGCTCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
29560877 TCAGTCGGAT
Statistics
Matches: 786, Mismatches: 131, Indels: 42
0.82 0.14 0.04
Matches are distributed among these distances:
867 97 0.12
868 313 0.40
869 236 0.30
870 6 0.01
877 1 0.00
880 1 0.00
881 1 0.00
882 4 0.01
883 127 0.16
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (874 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AACCAGACCGAGGGTTGTGGCAGTAGGACCAGCAACGGGATCGACAGCACGAAGAGGGGGACCGG
ACTGATCCCCGACTTACGCATTATGACTCGCCTCCTCCGGTCGACTGAGCACCCACACCCTCATT
TCGTGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAAGCATACAGAATTCATTCCCAGTC
TAACATCAGACTAGACCGAGGGTTACGACAACAGGATCGGTAGCACGAAGAGGGGACCAGGTCGA
TCCCCGACTTGCGCATTCTGCCTCTACGACCGGCTGAGCGCCGCCATGCCCGTTTCGTGGGTTGG
CTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTTGCGACAACGGGAC
CGACAGCACACAGAGGGGGACCGGGCTGATCCCCGCCTTGCCCATTATGCCTCTCCGATCGGCTC
AATGCCCGCACGCTCATCTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
GACCAGACAGAAGGTTACGGCAGCAGGATCGACAGAACACAGGAGGGATCAGGTCGATCTCCGGC
TTGCGCATTCTGCCTCTCCGACCGGCTGAACGCCAGCACACTCATTTCGTGGGTTGGCTTAGGCA
TACAGAGTTCATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGA
GGGTTACGACAGCAGGACCAACAGCAGGATCGACAGCACACAAAGGGGACCGAGCCGATCCCCGG
ATTGCACATTCTGCCTCTCCGACTGGCTA
Found at i:29561031 original size:512 final size:512
Alignment explanation
Indices: 29560264--29561407 Score: 1212
Period size: 512 Copynumber: 2.2 Consensus size: 512
29560254 GGACCGGGCT
* * * * * * * * * * *
29560264 GATCCCCGGCTTGCGCATTCTGCCTCTACGATCGGCTGAGTGCCC-CTATGCCCGTTTTGTGGGT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTAAGAGCCCGC-ACGCTCATTTCGTGGGT
** * * *
29560328 TGTTTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACAGAGGGTTGTGCAGCGG
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGTCGGAACA-AGGGTTATGCAGCGG
* * *
29560392 GACCGGTAGCACACATAGGGGGACTGGGCTGATCCCCGGCTTGCCCATTATGCCTCTCTGTCCGG
128 GACCGGCAGCACACAGAGGGGGACTGGGCTGATCCCCAGCTTGCCCATTATGCCTCTCTGTCCGG
** * *
29560457 CTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
193 CTCAGCACCCGCACGCTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
29560522 TCAGACCGGACTGAGGGTTACGGCAGTAGGATCGATAGAACACAGGAGGGATCAGGTCGGTCCCT
258 TCAGACCGGACCGAGGGTTACGGCAGCAGGATAGATAGAACACAGGAGGGACCAGGTCGATCCCC
* * * * * * *
29560587 GGCTTGCGCATTCTGCCTTTTCGACCGGCTGAATGCCCGCAAGCTCATTTTGTGGGTTGGCTTAG
323 GGCTTACGCATTCTACCTCTCCAACCGGCTGAATGCCCGCAAGCTCATTTCGTGGGATGGCTTAG
*
29560652 GCATATAGAGTTGATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAAC
388 GCATATAGAGTTCATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAAC
* * * * * * *
29560717 AGAGGGTTACGA-CAGTAGGACTAGCGGTAGGATTGATAGCACACA-AAGGGGACCGAGTC
453 AGAGGGTT-CGAGCAGCAGGACCAGCAGCAAGATCGACAGCACACAGAAGGGGACCGAGTC
* ** * * * * *
29560776 GATCCCCGGA-TTGTGCATTCTGCCTCTCCGGCTGGCTAAGCGCTCGTACGCTCATTTCGTGGGT
1 GATCCCC-GACTTGCGCATTCTGCCTCTCCAACCGACTAAGAGCCCGCACGCTCATTTCGTGGGT
* *
29560840 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGTCGGATCAAGGGTTATGGCATCGG
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC-CAGTCGGAACAAGGGTTAT-GCAGCGG
* * * * * *
29560905 GACTGGCAGCA-AGCAGAGGGGGA-TCGGG-TCGATCCCTATCTTGCGCATTATTCTTCT-TCGA
128 GACCGGCAGCACA-CAGAGGGGGACT-GGGCT-GATCCCCAGCTTGCCCATTATGCCTCTCT-G-
* * *
29560966 T-CGGCTCAGCACCCGTACGCTCATTTCGAGGGTTGACTTAGGCGTATGGAGTTCA-TCCCAGTC
188 TCCGGCTCAGCACCCGCACGCTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
** * * * * * *
29561029 TAAGATTGGACTGGACCGAGGGTTGCGGTAGCAGGATAGATAGCACGCAGGAGGGACCGGGTCGA
253 TAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATAGATAGAACACAGGAGGGACCAGGTCGA
* * * * * *
29561094 TCCCCGGCTTACGCATTTTACCTCTCCAACCGGTTGAGTGCCCGGATGCTCCTTTCGTGGGATGG
318 TCCCCGGCTTACGCATTCTACCTCTCCAACCGGCTGAATGCCCGCAAGCTCATTTCGTGGGATGG
* * ** *
29561159 CTTAGGCATATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCGTTCCCAGTCTAAGATCAGAC
383 CTTAGGCATATAGAGTTCATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * ** * *
29561224 TGGACCGAGGGTTGGAGCAGCAGGACCAGCAGCAAGATCGACAGCACGTAGGAGGGGACCGGGTC
448 CGAACAGAGGGTTCGAGCAGCAGGACCAGCAGCAAGATCGACAGCACACAGAAGGGGACCGAGTC
* * * * *
29561289 GATCCCCGACTTGCGCATTCTGCTTCTTCAACCGACTGAGAGCCCGCATGCTCATTTCATGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTAAGAGCCCGCACGCTCATTTCGTGGGTT
* * *
29561354 GGCTTAAGCATGCGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCAAGGGTT
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGTCGGAACAAGGGTT
29561408 TTGGTAGCAA
Statistics
Matches: 517, Mismatches: 101, Indels: 27
0.80 0.16 0.04
Matches are distributed among these distances:
511 4 0.01
512 300 0.58
513 212 0.41
514 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (512 bp):
GATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTAAGAGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGAACAAGGGTTATGCAGCGGGAC
CGGCAGCACACAGAGGGGGACTGGGCTGATCCCCAGCTTGCCCATTATGCCTCTCTGTCCGGCTC
AGCACCCGCACGCTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCGAGGGTTACGGCAGCAGGATAGATAGAACACAGGAGGGACCAGGTCGATCCCCGGC
TTACGCATTCTACCTCTCCAACCGGCTGAATGCCCGCAAGCTCATTTCGTGGGATGGCTTAGGCA
TATAGAGTTCATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGA
GGGTTCGAGCAGCAGGACCAGCAGCAAGATCGACAGCACACAGAAGGGGACCGAGTC
Found at i:29561200 original size:26 final size:26
Alignment explanation
Indices: 29561164--29561216 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29561154 GATGGCTTAG
29561164 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
*
29561190 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
29561216 G
1 G
29561217 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:29561574 original size:26 final size:26
Alignment explanation
Indices: 29561544--29561594 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29561534 GTTGACTTAG
*
29561544 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
* *
29561570 GCATACGGACTTCATTCCCAGTCTA
1 GCATACGAACTTCATCCCCAGTCTA
29561595 TTATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAGTCTAA
Found at i:29561933 original size:159 final size:159
Alignment explanation
Indices: 29561570--29561934 Score: 344
Period size: 159 Copynumber: 2.3 Consensus size: 159
29561560 CCCAGTCTAA
* ** * * *
29561570 GCATACGGACTTCATTCCCAGTCTATTATCGGACCGAACCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGATCGACA
* * * * * *
29561635 GCACGTAGGGGAGACTCGGGCCGATCCTCAGCTTGCGCATTCTGCGTCTACGGTCGGCTGAGCGC
66 GCACGCAGGGGAGACTCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTACGGTCGGCTCAACGC
* **
29561700 CCCCATGCCCATTTCATGGGTTGTTTTAG
131 CCCCACGCCCATTTCATGGGTTGACTTAG
* * ** * * **
29561729 GCATAGGGAGTTCATT-CCATCTCTAAGCCCCAG-CCAGACTAAGGGTTGTGGCAGT-GAGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCAGCAGTAG-GATCG
* * * * * * *
29561791 GCAGCTCGCAGAGGGGGAC-CGGGCTGATCCCCGGCTTGCGCATTATGCCTCT-CTGTCCGGTTC
63 ACAGCACGCAG-GGGAGACTCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTACGGT-CGGCTC
** * *
29561854 AACGCCTGCACGCTCGTTTCATGGGTTGACTTAG
126 AACGCCCCCACGCCCATTTCATGGGTTGACTTAG
29561888 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
29561935 ACGATAGCAG
Statistics
Matches: 159, Mismatches: 40, Indels: 14
0.75 0.19 0.07
Matches are distributed among these distances:
158 10 0.06
159 138 0.87
160 11 0.07
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGATCGACA
GCACGCAGGGGAGACTCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTACGGTCGGCTCAACGC
CCCCACGCCCATTTCATGGGTTGACTTAG
Found at i:29562678 original size:513 final size:513
Alignment explanation
Indices: 29561656--29562881 Score: 1270
Period size: 513 Copynumber: 2.4 Consensus size: 513
29561646 AGACTCGGGC
* * * * *
29561656 CGATCCTCAGCTTGCGCATTCTGCGTCTACGG-TCGGCTGAGCGCCCCCATGCCCATTTCATGGG
1 CGATCCCCAGATTGCGCATTCTGCCTCTACGGCT-GGCTGAGCGCCCGCATGCTCATTTCATGGG
** * * ** *
29561720 TTGTTTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAG-CCAGACTAAGGGTTGTGGCAGT
65 TTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGTCGA-ACCGAGGGTTATGGCAGT
* * *
29561784 GAGATCGGCAGCTCGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGTCC
129 GAGATCGGCAACTCGCAGAGGGGGACAGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGGCC
* * * *
29561849 GGTTCAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
194 AGCTCAACACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
29561914 GATCAGACCGGACTGAGGGTTACGATAGCAGGATCGATAGAACACAGGAGGGATCAGGCCGGTCC
259 GATCAGACCGGACCGACGGTTACGATAGCAGGATCGATAGAACACAGGAGGGACCAGGCCGATCC
* * *
29561979 CTGGCTTGCGCATTCTGCCTCTTCCGACCGGCTGAATGCCCGCACGCTCATTTTGTGGGTTGGCT
324 CCGGCTTGAGCATTCTGCCTCTTCCGACCGGCTGAATGCCCGCACGCTCATTTCGTGGGTTGGCT
* * * *
29562044 TAGGCATATAGAGTTCTTTCCATGCCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAGATCG
389 TAGGCATACAGAGTTCATTCCATGCCTAACCATACAGAGTTCATTCCCAATCTAAGATCAGACCG
* * * * * *
29562109 GACTGACGGTTACGATAATAGGACTAGCGGCAGGATCGACAGCACACAAGGGGGACCGAGT
454 GACCGACGGTTACGACAATAGGACCAACAGCAAGATCGACAGCACACAAGGGGGACC-AGT
* * * * * *
29562170 CGATCCCCGGATTGCACATTCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGT
1 CGATCCCCAGATTGCGCATTCTGCCTCTACGGCTGGCTGAGCGCCCGCATGCTCATTTCATGGGT
* *
29562235 TGGCTTAGGCATACGGAGTTCATTCCATTTCTGAGCCCCAGTCGAACCGAGGGTTATGGCA-TCG
66 TGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGTCGAACCGAGGGTTATGGCAGT-G
* * * *
29562299 GGA-CTGGCAACTCGCAGAGGGGGATCAGGTC-GATCCCCGTC-TGCGCATTATTCCTCT-TCGG
130 AGATC-GGCAACTCGCAGAGGGGGA-CAGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCT-GG
* *
29562360 CCAGCTCAGCACGTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
192 CCAGCTCAACACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
29562425 AAGATTAGACCGGACCGACGGTTGC-AGTAGCAGGATTGATAGCACGCGGGAGGGACCGGGCTGA
257 AAGATCAGACCGGACCGACGGTTACGA-TAGCAGGATCGATAGAACACAGGAGGGACCAGGCCGA
* *
29562489 TCCCCGGCTTGAGCATTCTGCCTC-TCC-AGCCGGCTGAGTGCCCGTACGCTTC-TTTCGTGGGT
321 TCCCCGGCTTGAGCATTCTGCCTCTTCCGA-CCGGCTGAATGCCCGCACGC-TCATTTCGTGGGT
* * * ** * **
29562551 TGGCTTAGGCATACAGAGTTCATTCTATGTCTAAGCATATGGAGTTCGTTCCCAATCTAAGATTG
384 TGGCTTAGGCATACAGAGTTCATTCCATGCCTAACCATACAGAGTTCATTCCCAATCTAAGATCA
* * * * * *
29562616 GACCGGACCGAGGGTT-GGAGCAGTAGGACCAACAGCAAGATCGACAGCATATAGGAGGGGACCA
449 GACCGGACCGACGGTTACGA-CAATAGGACCAACAGCAAGATCGACAGCACACAAG-GGGGACCA
29562680 GT
512 GT
* * * * * ** * ** *
29562682 CGATCCTCAGCTTGCGTATTCTACCTTTTTGGCCGATTGAGCGACCTGCATGCTCATTTCATGGG
1 CGATCCCCAGATTGCGCATTCTGCCTCTACGGCTGGCTGAGCG-CCCGCATGCTCATTTCATGGG
* ** * * * * *
29562747 TTGGCTTAAGCATGTGAAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTTTGGCAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGTCGAACCGAGGGTTATGGCAG--
* * * * *
29562812 GGACAGCAGCGGGATCAACAGCACACAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGC
128 TG--AG-ATC-GG--C-A-A-CTCGCAGAGGGGGACAGGGCTGATCCCCGGCTTGCGCATTATGC
29562877 CTCTC
184 CTCTC
29562882 CAGTCAGCCT
Statistics
Matches: 577, Mismatches: 108, Indels: 42
0.79 0.15 0.06
Matches are distributed among these distances:
511 3 0.01
512 159 0.28
513 228 0.40
514 131 0.23
515 8 0.01
517 1 0.00
518 1 0.00
519 3 0.01
521 1 0.00
522 1 0.00
523 5 0.01
524 21 0.04
525 15 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (513 bp):
CGATCCCCAGATTGCGCATTCTGCCTCTACGGCTGGCTGAGCGCCCGCATGCTCATTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGTCGAACCGAGGGTTATGGCAGTGA
GATCGGCAACTCGCAGAGGGGGACAGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCAG
CTCAACACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGACGGTTACGATAGCAGGATCGATAGAACACAGGAGGGACCAGGCCGATCCCC
GGCTTGAGCATTCTGCCTCTTCCGACCGGCTGAATGCCCGCACGCTCATTTCGTGGGTTGGCTTA
GGCATACAGAGTTCATTCCATGCCTAACCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA
CCGACGGTTACGACAATAGGACCAACAGCAAGATCGACAGCACACAAGGGGGACCAGT
Found at i:29563665 original size:26 final size:26
Alignment explanation
Indices: 29563628--29563677 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
29563618 GTTGACTTAG
29563628 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
29563654 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
29563678 CAGATTGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29564118 original size:157 final size:156
Alignment explanation
Indices: 29563654--29564144 Score: 474
Period size: 157 Copynumber: 3.1 Consensus size: 156
29563644 CCCAGTCTAA
* * * **
29563654 GCATACGGAGTTCATTCCCAGTCTCAGATTGGA-TCGGACTGAGGGTTGCAACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCAGGATCGAT
* * *
29563718 AGCACGCAGGGGGAC-CGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGC
65 AGCATGCAGGGGGACTC-GGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGTCC
* *
29563782 CTACACGCCCGTTTCGTGGGTTGGCTTAG
129 CT-CACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * * *
29563811 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCTAGCCGGATCGAGGGCTGTGGTAGCAGGACCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAGCAGGATC-G
* * * * *
29563874 CAT--CATGCAGAGGGGGA-TCGAGCCGATCCCTAGCCTGCACATTATGCCTCTTCGATCGGCTC
63 -ATAGCATGC--AGGGGGACTCG-GCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTG
* * * *
29563936 AGTGCCCGCACGCTCGTTTCTTGGGTTGACTTAT
124 AGT-CCCTCACGCTCGTTTCATGGGTTGGCTTAG
* *
29563970 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGATA
* ** * * *
29564035 GCATGCAGGGGGACTTGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCTCCC
66 GCATGCAGGGGGACTCGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTGAG-TCCC
*
29564100 TTACGCTCGTTTCATGGGTTGGCTTAG
130 TCACGCTCGTTTCATGGGTTGGCTTAG
*
29564127 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
29564145 ATGTGTAAGC
Statistics
Matches: 261, Mismatches: 57, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.02
157 127 0.49
158 6 0.02
159 117 0.45
160 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCATGCAGGGGGACTCGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGTCCCT
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:29570894 original size:159 final size:159
Alignment explanation
Indices: 29570605--29571103 Score: 519
Period size: 159 Copynumber: 3.1 Consensus size: 159
29570595 CTAAGCAGAT
* * * * * *
29570605 GGAGTTCATTCCCA-GCCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCAACAGCAC
1 GGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCAC
* * *
29570668 GCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCAC
65 GCAGAGGGGGACC-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGC
* * * *
29570732 ACGCCCATTTCATGGATTGGCTTAGGCATAG
129 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* * ** **
29570763 GGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGTGGGACCGGTAGCACG
1 GGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACG
* * * * * ** *
29570827 CAGAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTAGGCTCAATGCCTGCA
66 CAGAGGGGGACC-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCA
* * *
29570892 CGCTCATTTTGTGGGTTGACTTAGCCATAC
130 CGCTCATTTCGTGGGTTGGCTTAGGCATAC
*** *** * **
29570922 GGAGTTCATTCCCA-GTCTAAG-ATTGGATTGGACTGAGGGTTGCGGCAGCAGGATTGACAGCAC
1 GGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCAC
29570985 GCATGA-GGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCA-GCTGAGCGCCC
65 GCA-GAGGGGGACCGG-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCGG-CAGGCTGAGCGCCC
*
29571048 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
127 GCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
29571081 GGAGTTCATTCCATGTCTAAGCA
1 GGAGTTCATTCCATGTCTAAGCA
29571104 TGCAGAGTTC
Statistics
Matches: 273, Mismatches: 58, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 53 0.19
159 210 0.77
160 7 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (159 bp):
GGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACG
CAGAGGGGGACCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCAC
GCTCATTTCGTGGGTTGGCTTAGGCATAC
Found at i:29571466 original size:26 final size:26
Alignment explanation
Indices: 29571430--29571482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29571420 GTTGACTTAG
29571430 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
29571456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29571482 G
1 G
29571483 ATCGAACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29571471 original size:355 final size:353
Alignment explanation
Indices: 29570966--29572165 Score: 1342
Period size: 366 Copynumber: 3.4 Consensus size: 353
29570956 GAGGGTTGCG
* * * * *
29570966 GCAGCAGGATTGACAGCACGCATGA-GGGGACCGGACCGATCC-CTGGCTTGCGCATTCTGCCTC
1 GCAGCGGGATCGACAGCACGCA-GAGGGGGATCGGGCCGATCCTCT-GCTTGCGCATTATGCCTC
* * * * * * *
29571029 TCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCC
64 TCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
* * * * *
29571093 ATGTCTAAGCATGCAGAGTTCATTTCCAGTCTAAGATCAGAACCGGATCGAGGGTTACGGTAGCA
129 A-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCGAGGGTTGCGGTAGCA
* * *
29571158 GGATCGGCAGCACGCATGGGGGACTGGGCCGATCCCC-GACTTACGCATTTTGCCTCTCCGACCG
192 GGATCGGCAGCACGCA-GGGGGACTGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGCCG
* * * *
29571222 GCTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
255 ACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
29571287 CCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACC
320 CCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACC
**
29571321 GACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGTTGATCCTCTGCTT-CGCATTATGCCTCT
1 G-CAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCTGCTTGCGCATTATGCCTCT
29571385 CCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA
65 CCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA
* *
29571450 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCCGATCGAGGGTTGCGGCA-CAAGG
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGGTAGC-AGG
* * ** *
29571514 ATCGACAGCACACAGGGGGGACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACT
194 ATCGGCAGCACGCA-GGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACT
* * *
29571579 GAGCG-TCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACC
258 GAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * *
29571643 CAACCGGACTGAGGGTTGTGGCAGCAGGACC
323 CAGCCGGACCGAGGGTTGTGGTAGCAGGACC
* * ** * * *
29571674 GTAGCGGGGTCGACAGCACGCAGAGGAAGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTC
1 GCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCTGCTTGCGCATTATGCCTCT-
* *
29571739 CGATCGGCCTCACCAGTTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACATAGGCATACGG
65 C---CGG--T---C----GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
* * **
29571804 AGTTCATCCCCAGTGTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGGCCAGA-CTGAGGGT
118 AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATC-GAGGGT
* ** * * *
29571868 TGCGGTAGCAGGATTGGCAGCACGCAGGGGGGTTCGGGCTGATCCCCAGCATGTGCATTCTGCCT
182 TGCGGTAGCAGGATCGGCAGCACGCAGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTCTGCCT
* *
29571933 CTCCGGCCGACTGAGCGCCTGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
246 CTCCGGCCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
29571998 ATGTCTAAGCCCCAGCCGGACCGAGGG-T-T-GT------A--
311 ATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACC
* * * * *
29572030 GCAGTGGGA-CTGACAGCACACAGAGAGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCT
1 GCAGCGGGATC-GACAGCACGCAGAGGGGGATCGGGCCGATCCTCTGCTTGCGCATTATGCCTCT
* * *** * * * * ** *
29572094 TCGGTCGGCTCAATGCCCGTATGCTCATTTCATGGGTTGATTTCTGCATACAGAGTTCATTCCCA
65 CCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA
29572159 GTCTAAG
130 GTCTAAG
29572166 ATCAGACCGG
Statistics
Matches: 721, Mismatches: 99, Indels: 62
0.82 0.11 0.07
Matches are distributed among these distances:
343 52 0.07
347 1 0.00
350 1 0.00
352 44 0.06
353 98 0.14
354 81 0.11
355 105 0.15
356 90 0.12
357 5 0.01
358 1 0.00
359 1 0.00
362 1 0.00
364 1 0.00
365 7 0.01
366 165 0.23
367 68 0.09
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (353 bp):
GCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCTGCTTGCGCATTATGCCTCTC
CGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGGTAGCAGGAT
CGGCAGCACGCAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAG
CGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
CCGGACCGAGGGTTGTGGTAGCAGGACC
Found at i:29571832 original size:26 final size:26
Alignment explanation
Indices: 29571796--29571848 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29571786 GTTGACATAG
*
29571796 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29571822 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29571848 G
1 G
29571849 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29573103 original size:159 final size:157
Alignment explanation
Indices: 29572884--29573285 Score: 389
Period size: 159 Copynumber: 2.5 Consensus size: 157
29572874 GAGCATTCTA
** * *
29572884 CCTCTCCAGCCGACT-AAGCGGCCGCACG-TCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
1 CCTCTCCAGCCGACTCAA-CACCCGTACGCT-CATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* *
29572947 ATTCCATGTCTAACCCCCAGCCGGACCGAGGGTTGTGGCAACAGGATCGGTAGCATGCAGAGGGG
64 ATTCCATGTCTAA-CCCCAGCCGGACCGAGGGTTGTGGCAACAGGATCGATAGCACGCAG-GGGG
* *
29573012 GACCAGGTTGATACTCAATTTGCGCATTATG
127 GACCAGGCTGATACTCAATTTACGCATTATG
** * * * * *
29573043 CCAT-TCTGGCTGGCTCAACACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCT
1 CC-TCTCCAGCCGACTCAACACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
*** * * * *
29573107 TTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGTACGTAGGGGGG
65 TT-CCATGTCTAACCCCAG-CCGGACCGAGGGTTGTGGCAACAGGATCGATAGCACGCAGGGGGG
* * ** * * *
29573171 ACCGGGCTGATCCTTGATTTATGTATTCTG
128 ACCAGGCTGATACTCAATTTACGCATTATG
* * * * **
29573201 CCTCTCCAGCCGACTGAGCGCCCGTACGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCAGCCGACTCAACACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
29573266 TCCATGTCTAAGCCCCAGCC
66 TCCATGTCTAA-CCCCAGCC
29573286 AAACTGAAGG
Statistics
Matches: 190, Mismatches: 45, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 88 0.46
159 91 0.48
160 7 0.04
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
CCTCTCCAGCCGACTCAACACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAACCCCAGCCGGACCGAGGGTTGTGGCAACAGGATCGATAGCACGCAGGGGGGACC
AGGCTGATACTCAATTTACGCATTATG
Found at i:29573275 original size:158 final size:158
Alignment explanation
Indices: 29572776--29573277 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 158
29572766 CCCCAGTCAA
* * * * * * *
29572776 GCATATGGAGTTCATT-CTTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
** *
29572840 AGCAAGTAGGGGGGACCGGGCTGATCCTTG-GCTAGAGCATTCTACCTCTCCAGCCGACTAAGCG
65 AGCAAGTAGGGGGGACCGGGCTGATCCTTGATTTA-AGCATTCTGCCTCTCCAGCCGACTAAGCG
* *
29572904 GCCGCACG-TCCATTTCGTGGGTTGGCTTAG
129 CCCGTACGCT-CATTTCGTGGGTTGGCTTAG
* *** *
29572934 GCATAGGGAGTTCATTCCATGTCTAACCCCCAG-CCGGACCGAGGGTTGTGGCAACAGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAA-GATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * * * ** ** * ** * *
29572998 AGCATGCAGAGGGGGACCAGGTTGATACTCAATTTGCGCATTATGCCAT-TCTGGCTGGCTCAA-
65 AGCAAGTAG-GGGGGACCGGGCTGATCCTTGATTTAAGCATTCTGCC-TCTCCAGCCGACT-AAG
* * *
29573061 CACCCGTACGCTCATTTCATGGGTTGACTTAG
127 CGCCCGTACGCTCATTTCGTGGGTTGGCTTAG
* * *
29573093 GCATACGGAGTTCTTTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * * *
29573157 AGTACGTAGGGGGGACCGGGCTGATCCTTGATTTATGTATTCTGCCTCTCCAGCCGACTGAGCGC
65 AGCAAGTAGGGGGGACCGGGCTGATCCTTGATTTAAGCATTCTGCCTCTCCAGCCGACTAAGCGC
* **
29573222 CCGTACGCTCGTTTCGTCAGTTGGCTTAG
130 CCGTACGCTCATTTCGTGGGTTGGCTTAG
29573251 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
29573278 CCCCAGCCAA
Statistics
Matches: 267, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 140 0.52
159 114 0.43
160 8 0.03
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
GCAAGTAGGGGGGACCGGGCTGATCCTTGATTTAAGCATTCTGCCTCTCCAGCCGACTAAGCGCC
CGTACGCTCATTTCGTGGGTTGGCTTAG
Found at i:29573455 original size:26 final size:26
Alignment explanation
Indices: 29573407--29573459 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29573397 GTTGACTTAG
* *
29573407 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAATTCATCCTCAGTCTAA
29573433 GCATACGGAATTCATTCC-CAGTCTAA
1 GCATACGGAATTCA-TCCTCAGTCTAA
29573459 G
1 G
29573460 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATCCTCAGTCTAA
Found at i:29573760 original size:159 final size:159
Alignment explanation
Indices: 29573433--29573936 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 159
29573423 CTTAGTCTAA
* * * ** * ** * * *
29573433 GCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATATGGAGTTCATTCCAAGTCTAAGCCCAGACCAGACCGAGGGTTATGGCAACAAGATCGACA
* * * * * * * * * * * * * *
29573498 GCATGTAGGAGGGACCGGGTCGATCCTCGACTTACGCATTCTGGCTC-TCCGGTCGGCTGAGCGC
66 GCACGAAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGGCCGGCTCAGCGC
** * *
29573562 CAACACGC-CTGTTTCATGGGTTGGCTTAG
131 CCGCACGCTC-ATTTCGTGGGTTGGCTTAG
* * * ** *
29573591 GCATAGGGAGTTCATTCCAAGTCTAAGCCCTAG-TCAGACCGAGGGTTGTGGCAACGGGATCGGC
1 GCATATGGAGTTCATTCCAAGTCTAAGCCC-AGACCAGACCGAGGGTTATGGCAACAAGATCGAC
* *
29573655 AGCACGAAGAGGGGGA-TCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTT-AGGTCGGCTCAG
65 AGCACGAAG-GGGGGACT-GAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGGCCGGCTCAG
* *
29573718 TGCCCGCACGCTCATTTCGTGGGTTGACTT-G
128 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * **
29573749 TGCATATGGAGTTTATTGCC-AGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGTAAGATCGA
1 -GCATATGGAGTTCATT-CCAAGTCTAAGCCCAGACCAGACCGAGGGTTATGGCAACAAGATCGA
* * * * * *
29573813 CAGCATGTAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCCGGCCGGCTGAGC
64 CAGCACGAAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGGCCGGCTCAGC
*
29573878 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
29573909 GCATATGGAGTTCATTCCATGTCTAAGC
1 GCATATGGAGTTCATTCCAAGTCTAAGC
29573937 ATACGGAGTT
Statistics
Matches: 278, Mismatches: 56, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
158 99 0.36
159 174 0.63
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (159 bp):
GCATATGGAGTTCATTCCAAGTCTAAGCCCAGACCAGACCGAGGGTTATGGCAACAAGATCGACA
GCACGAAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGGCCGGCTCAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:29573945 original size:26 final size:26
Alignment explanation
Indices: 29573909--29573961 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29573899 GTTGGCTTAG
* *
29573909 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
29573935 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
29573961 G
1 G
29573962 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:29574668 original size:26 final size:26
Alignment explanation
Indices: 29574632--29574684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29574622 GTTGACTTAG
29574632 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29574658 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29574684 G
1 G
29574685 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29576371 original size:157 final size:156
Alignment explanation
Indices: 29575921--29576418 Score: 552
Period size: 157 Copynumber: 3.2 Consensus size: 156
29575911 CCTAGTCTAA
* * * *
29575921 GCATGCGGAGCTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-GATCGGAACGAGGGTTGCGGTAGTAGGATCGAC
** * * * * * * * *
29575985 AGCATACAGGGGGGACCGGGTAGAT-CCCGACTTACGCATTCTGCCTCTCCGCCGACTGAACGCC
64 AGCACGCGGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCC
* *
29576049 CGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * * * * *
29576077 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACGAGGGTTGTGGTAATGGGACCGGCAG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGATCGGAACGAGGGTTGCGGTAGTAGGATCGACAG
* * *
29576142 CACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGCC
66 CACGC-GGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCC
* *
29576207 CGAACGCTCATTTCGTGGGTTGACTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * * **
29576235 GCATACGAAGTTCATTCCCA-GTCTAAGATCGATCGGACCAAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGATCGGAACGAGGGTTGCGGTAGTAGGATCGACA
* *
29576299 GCACGCGGGGGGGACTGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACGCGGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCC
*
29576364 CGCACGCTCCTTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
*
29576392 GCATACGGTGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
29576419 CATACAGAGT
Statistics
Matches: 277, Mismatches: 59, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
155 31 0.11
156 38 0.14
157 121 0.44
158 84 0.30
159 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGATCGGAACGAGGGTTGCGGTAGTAGGATCGACAG
CACGCGGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:29576430 original size:26 final size:26
Alignment explanation
Indices: 29576392--29576444 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29576382 GTTGGCTTAG
* *
29576392 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29576418 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29576444 G
1 G
29576445 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29576798 original size:184 final size:184
Alignment explanation
Indices: 29576235--29576799 Score: 631
Period size: 196 Copynumber: 3.0 Consensus size: 184
29576225 GTTGACTTAG
* * * *
29576235 GCATAC-GAAGTTCATTCCCAGTCTAAGATCG-ATCGGACCAAGGGTTGCGACAGTAGGATCGAC
1 GCATACAGAA-TTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGAGGCAGCAGGATCGAC
* * * * *
29576298 AGCACGCGGGGGGGACTGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
29576363 CCGCACGCTCC-TTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAA
130 CCGCATGC-CCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
29576418 GCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGCTTGCAGCAGCAAGACCAGC
1 GCATACAGAATTCATTCCCAGTCTAAGATCGA-ATCGGACCGAGGGTT------G--AG----GC
* *
29576482 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGAT-CCTCGGCTTGAGCATTCTGCCTCTTCG
53 AGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCT-GGCTTGAGCATTCTGCCTCTCCG
* * * * * * *
29576546 GTCGACTGAGTGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCA-TCCCTAGT
117 GTCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GT
29576610 CTAA
181 CTAA
* * * *
29576614 GCATATAGAATTCATTCCCAGTCTAAGATCGAATTGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACAGAATTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGAGGCAGCAGGATCGACA
* * * *
29576679 GTACGCAGGGGGAACCGGGCCGATCCCTGGCTTGGGCATTCTGCCTCTCC-GACTGGCTGAGCGC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGAGCATTCTGCCTCTCCGGTC-GGCTGAGCGC
*
29576743 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
29576798 GC
1 GC
29576800 CCCAGCCAGA
Statistics
Matches: 316, Mismatches: 44, Indels: 43
0.78 0.11 0.11
Matches are distributed among these distances:
183 28 0.09
184 123 0.39
185 7 0.02
188 1 0.00
190 2 0.01
192 1 0.00
195 7 0.02
196 146 0.46
197 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (184 bp):
GCATACAGAATTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGAGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:29576983 original size:26 final size:26
Alignment explanation
Indices: 29576931--29576983 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29576921 GTTGGCTTAG
*
29576931 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
29576957 GCATATGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
29576983 G
1 G
29576984 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:29577682 original size:26 final size:26
Alignment explanation
Indices: 29577653--29577703 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29577643 GTTGACTTAG
*
29577653 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
29577679 GCATACAAAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATCCCCAGTCTA
29577704 GGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:29578155 original size:158 final size:157
Alignment explanation
Indices: 29577687--29578179 Score: 492
Period size: 158 Copynumber: 3.1 Consensus size: 157
29577677 AAGCATACAA
* * * * * ** *
29577687 AGTTCATTCCCA-GTCTAGGATCAGACCGAACCAAGGGTTGCGACAGTAGGATCGGTAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACACA
* * * * *
29577751 GGGGGGACTGGGTCGATCCTCGACTTGCACATTCTGCGTCTCCGGTCGGCTGAGCGCCCGCACGC
65 GGGGGGACCGGGTCGATCCTCG-CTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGC
* *
29577816 -CTGTTTCGTGGGTTGGCTTAGGTATAGGG
129 TC-GTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * *
29577845 AGTTCATTCCATGTCTAAGACCCAG-TCGGATCGAGGGTTGTGCCAGCGGGACCGACAGCACACA
1 AGTTCATTCCATGTCTAAGA-TCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACACA
* * * * * * *
29577909 GAGGGGGATCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTTCGATCGACTCAGCACCCGCACA
65 G-GGGGGACCGGGTCGATCC-TCGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACG
* * * *
29577974 CTCATTTTGTAGGTTGACTTAGGCATACGG
128 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
* **
29578004 AGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACACA
1 AGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACACA
* * * * *
29578068 GGGGGGACCGAGG-CGGTCCCCAGCTTGTGCATTCTGCCTCTCCAATCGACTGAGTGCCCGCACG
65 GGGGGGACCG-GGTCGATCCTC-GCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACG
* *
29578132 CTCGTTTCATGGGTTGGCTTAGGCATACGA
128 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
29578162 AGTTCATTCCATGTCTAA
1 AGTTCATTCCATGTCTAA
29578180 CCATACAGAG
Statistics
Matches: 267, Mismatches: 58, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 130 0.49
159 125 0.47
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACACAG
GGGGGACCGGGTCGATCCTCGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:29578387 original size:200 final size:198
Alignment explanation
Indices: 29578048--29578577 Score: 552
Period size: 200 Copynumber: 2.7 Consensus size: 198
29578038 GGGTTGTGGT
* * * * *
29578048 AGCAGGATCGACAGCACACAGGGGGGACCGAGG-CGGTCCCC-AGCTTGTGCATTCTGCCTCTCC
1 AGCAAGATTGACAGCACACAGGGGGGACC-AGGCCGATCCCCGA-CTTGCGCATTCTACCTCTCC
* *** * *
29578111 AATCGACTGAGTGCC--CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
64 AACCGACTGAACACCTGCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
* * ** * *
29578174 GTCTAACCATACAGAGTGCT-TTCCTATTCTAAGATCGGACCGGACCAAGGCTTGCGATAGCAGG
129 GTCTAAGCATACAGAGT-CTATTCCCAGACTAAGATCGGACCAGACCAAGGCTTGCGACAGCAGG
*
29578238 ACCAAT
193 ACCAAC
* ** * * * * * **
29578244 AGCAGGATTGGTAGCACATAGGGGGGACCAGGCCGATCCCTGACTTGTGCATTCTATCTCTTCGG
1 AGCAAGATTGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAA
** * *
29578309 CCGGTTGAACGCCTGCACTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CCGACTGAACACCTGCA--CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
* * * * *
29578374 GTCTAAGCATACAGAGTTTATTCCCAGACTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGA
129 GTCTAAGCATACAGAGTCTATTCCCAGACTAAGATCGGACCAGACCAAGGCTTGCGACAGCAGGA
*
29578439 CCAGC
194 CCAAC
* * * *
29578444 AGCAAGATTGACAGCCCGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAA
1 AGCAAGATTGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAA
* * * *
29578509 CCGACTGAGCACCTGCACA--CTCATTTCGTGGCTTGGCTTCGGCATACGAAGTTCATTCCATGT
66 CCGACTGAACACCTGCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
29578572 CTAAGC
131 CTAAGC
29578578 CCCTGTCAGA
Statistics
Matches: 273, Mismatches: 54, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
195 3 0.01
196 102 0.37
197 1 0.00
198 3 0.01
199 1 0.00
200 163 0.60
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (198 bp):
AGCAAGATTGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAA
CCGACTGAACACCTGCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
CTAAGCATACAGAGTCTATTCCCAGACTAAGATCGGACCAGACCAAGGCTTGCGACAGCAGGACC
AAC
Found at i:29578405 original size:26 final size:26
Alignment explanation
Indices: 29578354--29578406 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29578344 GTTGGCTTAG
* *
29578354 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGACTAA
*
29578380 GCATACAGAGTTTATTCCCA-GACTAA
1 GCATACAGAGTTCATT-CCATGACTAA
29578406 G
1 G
29578407 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGACTAA
Found at i:29578749 original size:26 final size:26
Alignment explanation
Indices: 29578719--29578771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29578709 GTTGACTTAG
*
29578719 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
29578745 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
29578771 G
1 G
29578772 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:29579062 original size:157 final size:160
Alignment explanation
Indices: 29578885--29579584 Score: 503
Period size: 157 Copynumber: 4.3 Consensus size: 160
29578875 CGGATGCCCA
* * *
29578885 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAATCAGATC-GAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCAGATCGGAGGGT
* * *
29578949 TATGGCAGCGGGACCGGTAGCACGCAGAGGGGGACT-GGACTGATCCCCGACTTACGCATTATGC
66 TATGGTAGCGGGACCGGTAGCACGCAGAGGGGGACTCGGGCTGATCCCCGACTTGCGCATTATGC
29579013 CTCTCGA-CGGCTGAGCGCCCGCACGCTCG
131 CTCTCGACCGGCTGAGCGCCCGCACGCTCG
* *
29579042 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGATAGAGTTCATTCCCAATC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC-----TA-AG--C---CCCAATC
*** * * ** * * * * *
29579106 TAAGATCGGACCGGACCGAGGGTTGCGTTAGCAGGATCGC-CAGCACTTAGGGGGAATCGGGCCG
54 --AGATCGGA--GG-GTTATGGTAGCGGGA-CCGG-TAGCAC-GCA--GAGGGGGACTCGGGCTG
** * * *
29579170 ATCCATGACTTGCGCATTTTGCCTCTCTAGCCGACTGAGCGCCCGCACGC-CTG
109 ATCCCCGACTTGCGCATTATGCCTCTCGA-CCGGCTGAGCGCCCGCACGCTC-G
* * * * *
29579223 TTTCGTGGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCAGATCGGAGGGT
* * * *
29579287 TGTGGTAACGGGATCGGTAGCACGCAGAGGGGGA-TCGGG-TCAATCCCCGACTTGCGCATTATG
66 TATGGTAGCGGGACCGGTAGCACGCAGAGGGGGACTCGGGCT-GATCCCCGACTTGCGCATTATG
* * * *
29579350 CCTCTTCGACCGGCTCAGCGCCCGTACACTCA
130 CCTC-TCGACCGGCTGAGCGCCCGCACGCTCG
* * * * ** * *
29579382 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTCAG-ATCAGACCGGATC-GAGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ATCAGATCGGAGG
* * * * ** * * * * * * *
29579444 GTTGTGATAGCAGGATCGACAGCTC-AAG-GGGGGA-TCGGGGTGATCCTCGGCTTCCGCATTCT
64 GTTATGGTAGCGGGACCGGTAGCACGCAGAGGGGGACTCGGGCTGATCCCCGACTTGCGCATTAT
29579506 GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCG
129 GCCTCT-CGACCGGCTGAGCGCCCGCACGCTCG
29579539 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29579585 ATACGGAGTT
Statistics
Matches: 418, Mismatches: 86, Indels: 77
0.72 0.15 0.13
Matches are distributed among these distances:
156 4 0.01
157 124 0.30
158 8 0.02
159 105 0.25
160 15 0.04
162 8 0.02
163 5 0.01
164 6 0.01
165 3 0.01
167 3 0.01
168 8 0.02
170 11 0.03
171 2 0.00
173 3 0.01
174 7 0.02
175 6 0.01
176 8 0.02
178 8 0.02
179 28 0.07
180 4 0.01
181 52 0.12
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCAGATCGGAGGGT
TATGGTAGCGGGACCGGTAGCACGCAGAGGGGGACTCGGGCTGATCCCCGACTTGCGCATTATGC
CTCTCGACCGGCTGAGCGCCCGCACGCTCG
Found at i:29579097 original size:23 final size:23
Alignment explanation
Indices: 29579067--29579111 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
29579057 TAGGCATACG
*
29579067 GAGTTCATCCCCAGTCTAAGATA
1 GAGTTCATCCCCAATCTAAGATA
*
29579090 GAGTTCATTCCCAATCTAAGAT
1 GAGTTCATCCCCAATCTAAGAT
29579112 CGGACCGGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (23 bp):
GAGTTCATCCCCAATCTAAGATA
Found at i:29579317 original size:338 final size:339
Alignment explanation
Indices: 29578698--29579428 Score: 913
Period size: 338 Copynumber: 2.1 Consensus size: 339
29578688 GTCCGCATGG
* *
29578698 TCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG-ATAC-GAGTTCATTCC
* *
29578763 CAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAGGATCGTCAGCATGCTGGAGGGACAGG
64 CAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGCCAGCAT-CTGGAGGGACAGG
* * * * * * *
29578828 GTCAATCCCCAGCTTACGCATTCTACCTCTCCGGCCGGCTGTGTGCCCGGATGCCCATTTCATGG
128 GCCAAT-CCCAGCTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCCATTTCATGG
* *
29578893 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAATCAGATCGAGGGTTATGGCAGC
192 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAGATCGAGGGTTATGGCAAC
* *
29578958 GGGACCGGTAGCACGCAGAGGGGGA-CTGGACTGATCCCCGACTTACGCATTATGCCTC-TCGA-
257 GGGACCGGTAGCACGCAGAGGGGGATCGGGAC-AATCCCCGACTTACGCATTATGCCTCTTCGAC
* *
29579020 CGGCTGAGCGCCCGCACGC
321 CGGCTCAGCGCCCGCACAC
*
29579039 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATA-GAGTTCATTCCCA
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATACGAGTTCATTCCCA
* **
29579103 ATCTAAGATCGGACCGGACCGAGGGTTGCGTTAGCAGGATCGCCAGCA-CTTAGG-GGGA-ATCG
66 ATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGCCAGCATC-T-GGAGGGACA--G
* * * * * ** *
29579165 GGCCGAT-CCATGACTTGCGCATTTTGCCTCTCTAGCCGACTGAGCGCCCGCACGCCTGTTTCGT
127 GGCCAATCCCA-G-CTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCCATTTCAT
* * * * *
29579229 GGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CTGAGGGTTGTGGT
190 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAGATC-GAGGGTTATGGC
* * *
29579293 AACGGGATCGGTAGCACGCAGAGGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTTCG
254 AACGGGACCGGTAGCACGCAGAGGGGGATCGGGACAATCCCCGACTTACGCATTATGCCTCTTCG
*
29579358 ACCGGCTCAGCGCCCGTACAC
319 ACCGGCTCAGCGCCCGCACAC
* * * *
29579379 TCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTCAGAT
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGAT
29579429 CAGACCGGAT
Statistics
Matches: 337, Mismatches: 43, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
336 5 0.01
337 7 0.02
338 208 0.62
339 8 0.02
340 64 0.19
341 45 0.13
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (339 bp):
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATACGAGTTCATTCCCA
ATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGCCAGCATCTGGAGGGACAGGGCC
AATCCCAGCTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCCCATTTCATGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAGATCGAGGGTTATGGCAACGGGA
CCGGTAGCACGCAGAGGGGGATCGGGACAATCCCCGACTTACGCATTATGCCTCTTCGACCGGCT
CAGCGCCCGCACAC
Found at i:29579404 original size:159 final size:158
Alignment explanation
Indices: 29579114--29579585 Score: 418
Period size: 159 Copynumber: 3.0 Consensus size: 158
29579104 TCTAAGATCG
* * * * * * * *** **
29579114 GACCGGACCGAGGGTTGCGTTAGCAGGATCGCCAGCACTTAGGGGGAATCGGGCCGATCCATGAC
1 GACCGGATCGAGGGTTGTGATAACAGGATCGACAGCAC-AAGGGGGGATCGGGGTAATCCCCGAC
* * * * * * * *
29579179 TTGCGCATTTTGCCTCT-CTAGCCGACTGAGCGCCCGCACGC-CTGTTTCGTGGGTTGGGTTAGG
65 TTCCGCATTATGCCTCTCCGA-CCGGCTCAGCGCCCGCACACTC-ATTTCGTGGGTTGGCTTAGG
* *
29579242 CATAGGGAGTTCATTCCATGTCTAAGCCCCA
128 CATACGGAGTTCATTCCATGTCTAAGCACCA
* * * ** *
29579273 G-TCGGA-CTGAGGGTTGTGGTAACGGGATCGGTAGCACGCAGAGGGGGATC-GGGTCAATCCCC
1 GACCGGATC-GAGGGTTGTGATAACAGGATCGACAGCAC-AAG-GGGGGATCGGGGT-AATCCCC
* * * * * *
29579335 GACTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACACTCATTTCATGGGTTGACTTAT
62 GACTTCCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAG
* *
29579400 GCATACGGAGTTCATTCCCA-GTCTCAG-ATCA
127 GCATACGGAGTTCATT-CCATGTCTAAGCACCA
* * * * *
29579431 GACCGGATCGAGGGTTGTGATAGCAGGATCGACAGCTCAAGGGGGGATCGGGGTGATCCTCGGCT
1 GACCGGATCGAGGGTTGTGATAACAGGATCGACAGCACAAGGGGGGATCGGGGTAATCCCCGACT
* * * *
29579496 TCCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
66 TCCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCAT
29579561 ACGGAGTTCATTCCATGTCTAAGCA
131 ACGGAGTTCATTCCATGTCTAAGCA
29579586 TACGGAGTTC
Statistics
Matches: 250, Mismatches: 52, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 90 0.36
158 41 0.16
159 109 0.44
160 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GACCGGATCGAGGGTTGTGATAACAGGATCGACAGCACAAGGGGGGATCGGGGTAATCCCCGACT
TCCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCACCA
Found at i:29579593 original size:26 final size:26
Alignment explanation
Indices: 29579557--29579609 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29579547 GTTGGCTTAG
29579557 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
29579583 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
29579609 G
1 G
29579610 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:29580306 original size:26 final size:26
Alignment explanation
Indices: 29580276--29580328 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29580266 GTTGGCTTAG
29580276 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29580302 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29580328 G
1 G
29580329 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29580784 original size:718 final size:718
Alignment explanation
Indices: 29579485--29581558 Score: 3494
Period size: 718 Copynumber: 2.9 Consensus size: 718
29579475 GGATCGGGGT
* ** * * * *
29579485 GATCCTCGGCTTCCGCATTCTGCCTCTCC-GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCCAG-CCGGCTGAGCACCCGCACACTCATTTCATGGGT
* * *
29579549 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTT
65 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTT
* * * ** * ** *
29579614 TGAGCCACGGTGCATATGCT-GGGTCAGGCATGTGCTCGTGCTGCATTTTTTTTGCCC-AGGGAA
130 TAAGCCACGGTGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGA-GGCA
* * * ** * *
29579677 CCA-CTGTCGGAGCATCGTCGGAGTGTCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTCAGGC
194 CCATC-GTCAGAGCATCATC-AAGCATCGTCGGAGAGCCTAACCGGCGGCATTGGGGGTTCTGGC
* * * * *
29579741 GATTGTGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
257 CATTGGGGGGGCC-AGAGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
29579806 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTTTAAAAAGCATTTGAGATTTTA
321 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTTTAAAAAGCATTTGAGATTTTA
29579871 TAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
386 TAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
**
29579936 ATCTTCTCCACTTCGAGTTTTTAACTGAATTTTTTTTTGCATGAAAACAAAAATACAAGGATCAC
451 ATCTTCTCCACTTCGAGTTTTTAACTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCAC
*
29580001 CTCTAATAAAATTTGGGGACAAAACTCTTTCTAAAAAAATGTTAAAAAATCCAAAACTGCAAAAA
516 CTCTAATAAAATTTGGGGACAAAACTCTTTCTAAAAAAATGTTAAAAAATCCAGAACTGCAAAAA
29580066 TTTTCAAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTTC
581 TTTTCAAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTTC
* *
29580131 ATTCCCTGTTTAATATCCGATCGAACCGAGGGTTGCAGCAGTTGGGTCGACAGCACACAAGGGGG
646 ATTCCCTGTCTAATATCCGATCGAACCGAGGGTTACAGCAGTTGGGTCGACAGCACACAAGGGGG
29580196 ACCTGGTC
711 ACCTGGTC
29580204 GATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACACTCATTTCATGGGTT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACACTCATTTCATGGGTT
29580269 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTT
66 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTT
29580334 AAGCCACGGTGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGAGGCACC
131 AAGCCACGGTGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGAGGCACC
*
29580399 ATCGTCAGAGCATCATCAAGCATCATCGGAGAGCCTAACCGGCGGCATTGGGGGTTCTGGCCATT
196 ATCGTCAGAGCATCATCAAGCATCGTCGGAGAGCCTAACCGGCGGCATTGGGGGTTCTGGCCATT
29580464 GGGGGGGCCAGAGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
261 GGGGGGGCCAGAGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
29580529 CCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTTTAAAAAGCATTTGAGATTTTATAGGT
326 CCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTTTAAAAAGCATTTGAGATTTTATAGGT
*
29580594 TTACTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTT
391 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTT
*
29580659 CTCCACTCCGAGTTTTTAACTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACCTCTA
456 CTCCACTTCGAGTTTTTAACTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACCTCTA
29580724 ATAAAATTTGGGGACAAAACTCTTTCTAAAAAAATGTTAAAAAATCCAGAACTGCAAAAATTTTC
521 ATAAAATTTGGGGACAAAACTCTTTCTAAAAAAATGTTAAAAAATCCAGAACTGCAAAAATTTTC
29580789 AAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTTCATTCC
586 AAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTTCATTCC
*
29580854 CTGTCTAATATCCGATCGAACCGAGGGTTACAGCAGTTGGGTCGACAGCACACAGGGGGGACCTG
651 CTGTCTAATATCCGATCGAACCGAGGGTTACAGCAGTTGGGTCGACAGCACACAAGGGGGACCTG
29580919 GTC
716 GTC
*
29580922 GATCCCCGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACACTCATTTCATGGGTT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACACTCATTTCATGGGTT
29580987 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTT
66 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTT
29581052 AAGCCACGGTGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGAGGCACC
131 AAGCCACGGTGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGAGGCACC
29581117 ATCGTCAGAGCATCATCAAGCATCGTCGGAGAGCCTAACCGGCGGCATTGGGGGTTCTGGCCATT
196 ATCGTCAGAGCATCATCAAGCATCGTCGGAGAGCCTAACCGGCGGCATTGGGGGTTCTGGCCATT
29581182 GGGGGGGCCAGAGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
261 GGGGGGGCCAGAGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
29581247 CCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTATAGGT
326 CCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTTTAAAAAGCATTTGAGATTTTATAGGT
* * * *
29581312 TTGCTACCAGTAGCCATTAAAGTGTCTGGAATAGGGACACTTTTTTCAAACGGTCACAAAATCTT
391 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTT
* * *
29581377 CTCCACTTCGATTTTTTAGCTGAATTTTTTTATGCAT-CCAACAAAAATACAAGGATCACCTCT-
456 CTCCACTTCGAGTTTTTAACTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACCTCTA
** * * * * * * *
29581440 ACCAAATTTGGGGATAAAATTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
521 ATAAAATTTGGGGACAAAACTCTTTCTAAAAAAATGTTAAAAAATCCAGAACTGCAAAAATTTTC
** * *
29581505 AAAAATCAAGAAAAATAGAAAACGGGTTGTCTTGCCACGAAACTTCACATGAAG
586 AAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAAG
29581559 TCTTAGGGGA
Statistics
Matches: 1285, Mismatches: 66, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
716 106 0.08
717 26 0.02
718 917 0.71
719 184 0.14
720 50 0.04
721 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (718 bp):
GATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACACTCATTTCATGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTT
AAGCCACGGTGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGAGGCACC
ATCGTCAGAGCATCATCAAGCATCGTCGGAGAGCCTAACCGGCGGCATTGGGGGTTCTGGCCATT
GGGGGGGCCAGAGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTTTAAAAAGCATTTGAGATTTTATAGGT
TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTT
CTCCACTTCGAGTTTTTAACTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACCTCTA
ATAAAATTTGGGGACAAAACTCTTTCTAAAAAAATGTTAAAAAATCCAGAACTGCAAAAATTTTC
AAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTTCATTCC
CTGTCTAATATCCGATCGAACCGAGGGTTACAGCAGTTGGGTCGACAGCACACAAGGGGGACCTG
GTC
Found at i:29581024 original size:26 final size:26
Alignment explanation
Indices: 29580994--29581046 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29580984 GTTGGCTTAG
29580994 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29581020 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29581046 G
1 G
29581047 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29582068 original size:159 final size:158
Alignment explanation
Indices: 29581892--29582289 Score: 467
Period size: 158 Copynumber: 2.5 Consensus size: 158
29581882 CGCACACCCA
* * *
29581892 TTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCTGGACCGAGGGTT
1 TTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
*
29581957 ATGGCAGCAGGACCGGCAGCACGCAGAGAAGGACCGGGTCAATCCCCAGCTTGCGCATTATGCCT
66 GTGGCAGCAGGACCGGCAGCACGCAG-GAAGGACCGGGTCAATCCCCAGCTTGCGCATTATGCCT
*
29582022 CCCCGACCGGCTCAGCACCCGCATGCTCG
130 CCCCGACCGGCTCAGCACCCGCACGCTCG
* ** ** *
29582051 TTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCAAGGG
1 TTTCATGAGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGG
* ** * ** ** ** * * *
29582114 TTGTGGCAGCAGGATCGATAGCACGTAGGGGGGACCGGGTTGATCCCTGGTTTGTGCATTCTGCC
64 TTGTGGCAGCAGGACCGGCAGCACGCAGGAAGGACCGGGTCAATCCCCAGCTTGCGCATTATGCC
* * ** * *
29582179 TCTCTGGTCGGTTGAGCACCCGCACGCTCG
129 TCCCCGACCGGCTCAGCACCCGCACGCTCG
* *
29582209 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
1 TTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
29582274 GTGGCAGCAGGACCGG
66 GTGGCAGCAGGACCGG
29582290 TAGCGGGATC
Statistics
Matches: 195, Mismatches: 40, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 117 0.60
159 73 0.37
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
TTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
GTGGCAGCAGGACCGGCAGCACGCAGGAAGGACCGGGTCAATCCCCAGCTTGCGCATTATGCCTC
CCCGACCGGCTCAGCACCCGCACGCTCG
Found at i:29582447 original size:26 final size:26
Alignment explanation
Indices: 29582411--29582463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29582401 GTTGACTTAG
*
29582411 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
29582437 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
29582463 G
1 G
29582464 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:29582941 original size:26 final size:26
Alignment explanation
Indices: 29582912--29582964 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29582902 GTTAGCTTAG
* * **
29582912 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
29582938 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
29582964 G
1 G
29582965 ATCTTATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:29583497 original size:159 final size:158
Alignment explanation
Indices: 29583251--29583622 Score: 385
Period size: 158 Copynumber: 2.4 Consensus size: 158
29583241 ACTGAGTGCT
* * * *
29583251 CGCACGCCCGTTT-ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
1 CGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
* * * * * * **
29583315 ACCGAGGGTTGTGGTAGCGGGATCGACAGCACGCAGAAGGGGATCGGGCT-GATCCTCGGCTTAC
66 ACCGAAGGTTGCGGCAGCAGGATCGACAGCACACAGAAGGGGA-CGGG-TGGATCCCCAACTTAC
* * *
29583379 ACATTATGCCTTTACG-GTCGGTTTAGCACC
129 ACATTATGCCTTTACGACT-GGCTGAGCACC
* * * ** *
29583409 CGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACT
1 CGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CT
* ** * *
29583472 GGATCGAAGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGGACTGGTGGATCCCCAACTTGC
64 GGACCGAAGGTTGCGGCAGCAGGATCGACAGCACACAGAAGGGGACGGGTGGATCCCCAACTTAC
* * *
29583537 ACATTCTGCCTTTTCGACTGGCTGAGCGCC
129 ACATTATGCCTTTACGACTGGCTGAGCACC
* *
29583567 CACACGCTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
1 CGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
29583623 ATATGGAGTT
Statistics
Matches: 174, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 95 0.55
159 72 0.41
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
ACCGAAGGTTGCGGCAGCAGGATCGACAGCACACAGAAGGGGACGGGTGGATCCCCAACTTACAC
ATTATGCCTTTACGACTGGCTGAGCACC
Found at i:29583630 original size:26 final size:26
Alignment explanation
Indices: 29583592--29583647 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
29583582 TGGGTTGGCT
*
29583592 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATATC
* *
29583618 TAAGCATATGGAGTTCATTCCCTATC
1 TAAGCATACGGAGTTCATTCCATATC
29583644 TAAG
1 TAAG
29583648 ATTTTGAGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATATC
Found at i:29584646 original size:159 final size:160
Alignment explanation
Indices: 29584344--29584847 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 160
29584334 CCAGTCTGAA
* * ** * *
29584344 CATACAGAGTTCATTCC-TAGTATAAG-ATCAGATTGAACCGAGGGTTGTGGCAGCAGGA-TCGA
1 CATACGGAGTTCATTCCAT-GTCTAAGCATCAGACCGGACCGAGGGTTGCGGCAGCAGGACT-GA
* * * * * * * *
29584406 CAGCATG-TAGGGGGGATCGAGCCGATCCCCGGCTTGCGCACTCTGCATCTCCGG-CTAGCTGAG
64 CAGCACGCAAGGGGGCACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAG
* * * *
29584469 CGCGCGCACGCCCGTTTCGTGGGTTGGCTTAGG
128 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * * **
29584502 CATAGGGAGGTCATTCCATGTCTAAGCCTC-GGCCGGACCGAGGGTTGTGGCAGTGGGACTGACA
1 CATACGGAGTTCATTCCATGTCTAAGCATCAGACCGGACCGAGGGTTGCGGCAGCAGGACTGACA
* * * * *
29584566 GGACGC-AGAGGGGCACCGGGCCGATCACCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCG
66 GCACGCAAG-GGGGCACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
29584630 CCCGCACGCTCATTTCGTGGGTTGACTTAGG
130 CCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * ** * *
29584661 CATACGTAGTTTATTCCCA-GTCTATG-ATCAGATCGGTTCGAGGGTTGCGGCAGCAGGATTGAT
1 CATACGGAGTTCATT-CCATGTCTAAGCATCAGACCGGACCGAGGGTTGCGGCAGCAGGACTGAC
* * * * * * * *
29584724 AGCACGCAAGGGGGGACTGGGCCGATCCCCGGCTTGCGTATTCTACCACTTCAGTTGGCTGAGCG
65 AGCACGCAAGGGGGCACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
*
29584789 CCCGCACGCTCATTTCGTGGG-TGTCTTAGG
130 CCCGCACGCTCATTTCGTGGGTTGACTTAGG
*
29584819 CATATGGAGTTCATTCCATGTCTAAGCAT
1 CATACGGAGTTCATTCCATGTCTAAGCAT
29584848 ACGGAGTTCA
Statistics
Matches: 275, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 79 0.29
159 187 0.68
160 6 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (160 bp):
CATACGGAGTTCATTCCATGTCTAAGCATCAGACCGGACCGAGGGTTGCGGCAGCAGGACTGACA
GCACGCAAGGGGGCACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAGG
Found at i:29584848 original size:26 final size:26
Alignment explanation
Indices: 29584818--29584870 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29584808 GGTGTCTTAG
*
29584818 GCATATGGAGTTCATTCCAT-GTCTAA
1 GCATACGGAGTTCATTCC-TGGTCTAA
29584844 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCTGGTCTAA
29584870 G
1 G
29584871 ACCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTGGTCTAA
Found at i:29585729 original size:26 final size:26
Alignment explanation
Indices: 29585693--29585745 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29585683 GTTTCGTGGG
*
29585693 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29585719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29585745 G
1 G
29585746 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29586138 original size:21 final size:21
Alignment explanation
Indices: 29586109--29586149 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
29586099 GCCCCAGTCA
* *
29586109 GACCGAGGGTTGTGGCAGCCG
1 GACCAAGGGTTATGGCAGCCG
29586130 GACCAAGGGTTATGGCAGCC
1 GACCAAGGGTTATGGCAGCC
29586150 AGATCGGTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.24, G:0.41, T:0.15
Consensus pattern (21 bp):
GACCAAGGGTTATGGCAGCCG
Found at i:29586789 original size:26 final size:26
Alignment explanation
Indices: 29586753--29586805 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29586743 ATTGGCTTAG
*
29586753 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29586779 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29586805 G
1 G
29586806 ATTTTGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29593178 original size:26 final size:26
Alignment explanation
Indices: 29593142--29593193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29593132 GTTGGCTTAG
*
29593142 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29593168 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29593194 CATTAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29593870 original size:26 final size:24
Alignment explanation
Indices: 29593828--29593878 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 24
29593818 AGGCATACAA
*
29593828 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATATCTAA-CAT-CGG
29593854 AGTTCATTCCCA-ATCTAACATCGG
1 AGTTCATT-CCATATCTAACATCGG
29593878 A
1 A
29593879 TCGGACCGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 4 0.17
25 3 0.13
26 13 0.57
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (24 bp):
AGTTCATTCCATATCTAACATCGG
Found at i:29594531 original size:159 final size:156
Alignment explanation
Indices: 29594364--29594723 Score: 363
Period size: 156 Copynumber: 2.3 Consensus size: 156
29594354 TTCATGCCCG
* *
29594364 TTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAGGCCCCAG-CC-AGACCAAAG
1 TTTCGTGGGTTGGCTTAGGCATACA-GAGTTCATTCCATGTCTAAG-ACCAGACCGA-ACCAAAG
* *
29594426 GTTGTGGCAGCGGGACCGGCAGCAC-ATAGAAGGGGATC-GAGTCGATCCTCGGCTTACACATTA
63 GTTGTGGCA---GGACCGACAGCACGATAG-AGGGGATCAGACT-GATCCTCGGCTTACACATTA
* * * *
29594489 TGCCTCTTCGACTGGCTCAGTGCCCGTTCGCTCA
123 TGCCTCTCCGACTAGCTCAGCGCCCGTACGCTCA
* * ** * ** * ** *
29594523 TTTTGTGGGTTGACTTATACGTACAGAGTTCATTCCCA-GTCTAAGATTAGATCGAACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCAGACCGAACCAAAGGT
* * * * *
29594587 TGTGGCAGGATCGACAGCACGCTAGGGGGGATCAGACTGATCCTCGGCTTACGCATTCTGCCTCT
65 TGTGGCAGGACCGACAGCACGATAGAGGGGATCAGACTGATCCTCGGCTTACACATTATGCCTCT
* *
29594652 CCGACTAGCTGAGCGCCCGTACGCTCG
130 CCGACTAGCTCAGCGCCCGTACGCTCA
29594679 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
29594724 CATACGTAGT
Statistics
Matches: 163, Mismatches: 31, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
155 3 0.02
156 100 0.61
157 6 0.04
158 2 0.01
159 47 0.29
160 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.26
Consensus pattern (156 bp):
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGACCGAACCAAAGGTT
GTGGCAGGACCGACAGCACGATAGAGGGGATCAGACTGATCCTCGGCTTACACATTATGCCTCTC
CGACTAGCTCAGCGCCCGTACGCTCA
Found at i:29594734 original size:26 final size:26
Alignment explanation
Indices: 29594697--29594749 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29594687 GTTGGCTTAG
29594697 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29594723 GCATAC-GTAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
29594749 G
1 G
29594750 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29595173 original size:26 final size:26
Alignment explanation
Indices: 29595143--29595195 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29595133 GTTGACTTAG
*
29595143 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29595169 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29595195 G
1 G
29595196 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29595656 original size:158 final size:156
Alignment explanation
Indices: 29595169--29595710 Score: 522
Period size: 158 Copynumber: 3.4 Consensus size: 156
29595159 CCCAGTCTAA
* *
29595169 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGGGTTGCGGCAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
29595233 AGCACGCAGGGGGGATCAAGCCGATCCCCGACTTGCT-CATTTTGCCTCTCCAGCCGACTGAA-C
65 AGCACGCAGGGGGGACCAGGCCGATCCCCGACTTG-TGCATTATGCCTCTCCAACCGGCTGAAGC
* *
29595296 ACC-CACACATCCGTTTCGTGGGTTGGCTTAG
129 -CCGCACGC-T-CGTTTCATGGGTT-GCTTAG
* * ** * * *
29595327 GCATAGGGAGTTCATTCCATGTCTAAG-CCCTAGTCGGACTGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCAGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * *
29595391 AGCACGCAGAAGGGGACTAGGTCGATCCCCGACTTGCGCATTATACATCTCCGACCAGCTCAATG
65 AGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCAACCGGCTGAA-G
*
29595456 CCCGCATGCTCGTTTCATGGGTTGACTTAG
128 CCCGCACGCTCGTTTCATGGGTTG-CTTAG
* * *
29595486 GCATACGAAGTTCATTCTC-TGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGAC
** * * * *
29595550 AGCACGCAGGGGGGACCAGGCCGATCCTAGATTTGTGCATTCTGCCTGTCCAACTGGCTGAGAGC
65 AGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCAACCGGCTGA-AGC
*
29595615 CCGCACGCTCGTTTCATTGGTTAGCTTAG
129 CCGCACGCTCGTTTCATGGGTT-GCTTAG
* ** * * * *
29595644 GCATACGGAGTTCACTCCATGTCTAAGCCCCAGTCGA-ACTGAGGGTTGTGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGAC
29595708 AGC
65 AGC
29595711 GGGATCGATA
Statistics
Matches: 307, Mismatches: 63, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 172 0.56
159 119 0.39
160 6 0.02
161 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCAACCGGCTGAAGCCC
GCACGCTCGTTTCATGGGTTGCTTAG
Found at i:29595844 original size:26 final size:26
Alignment explanation
Indices: 29595815--29595867 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29595805 GTTGACTTAG
*
29595815 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
29595841 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29595867 G
1 G
29595868 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29596732 original size:26 final size:26
Alignment explanation
Indices: 29596696--29596748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29596686 GTTGACTTAG
29596696 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
29596722 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
29596748 G
1 G
29596749 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:29598869 original size:26 final size:26
Alignment explanation
Indices: 29598833--29598885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29598823 GTTGGCTTAG
*
29598833 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29598859 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29598885 G
1 G
29598886 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29599234 original size:514 final size:509
Alignment explanation
Indices: 29598266--29599609 Score: 1511
Period size: 514 Copynumber: 2.6 Consensus size: 509
29598256 GTTCGATCCC
* * * *
29598266 CGGCTTGCGCATCCTACCTCTCTGGTTGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTA
1 CGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTA
** * * * * * *
29598331 GGCATACAAAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCAAGTCTAAGATCGGATCGG
66 GGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
29598395 ACCGAGGGTTGCA-A-CAG----C-G--GGATCGGCAGCATG-TAGGGGGGACTGGGCTGATCCT
130 ACTGAGGGTTGCACAGCAGACCACAGCAGGATCGGCAGCATGCAAGGGGGGACCGGTCT-ATCCC
* * *
29598450 CGGCTTACGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTA
194 CGGCTTACGCATTCTGCCTCTCC-GTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTA
* *
29598515 GGCATAGCGAGTTCATACCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGC-GGTACCGA
258 GGCATAGGGAGTTCATACCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCAGG-ACCGG
* * *
29598579 CAGCATGCAGAAGGGGACTAGGCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCGGCTCAGC
322 TAGCATGCAGAAGGGGACCAGGCCGATCCCCAACCTGCGCATTATGCCTCTCCGACCGGCTCAGC
* *
29598644 ACCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAATCTAAGATCGAAC
387 ACCCGGACGCTCGTTTCAAGGGTTGACTTAGGCATACAGAGCTCATTCCCAATCTAAGATCGAAC
* * *
29598709 CAAAACGAGGGTTGCT-ACAGCAAGATAGATAGCACGTAGGGGGGA-TCGGGCTGGTCCA
452 CAAAACGAGGGTTG-TGACAACAAGATAGACAGCACGCAGGGGGGACT-GGGCTGGTCCA
* * * *
29598767 CGGCTTGCGCATTCTACCTCTCTGGTCGACTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTA
1 CGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTA
*
29598832 GGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA
66 GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
29598897 CTGAGGGTTGCGACAGTCAGACCAACAGCAGGATCGGCAGCATGCAAGGGGGGACCGTGTCTATC
131 CTGAGGGTTGC-ACAG-CAGACC-ACAGCAGGATCGGCAGCATGCAAGGGGGGACCG-GTCTATC
* * * *
29598962 CCCAGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCT
192 CCCGGCTTACGCATTCTGCCTCTCCG-TCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCT
* * * *
29599027 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGATCG
256 TAGGCATAGGGAGTTCATACCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCAGGACCG
* * *** * *
29599092 GTAGCATGCAG-AGGCGGACCGGGTCGATCCCTGGCCTGCGCATTATGCCTCTCTGACTGGCTCA
321 GTAGCATGCAGAAGG-GGACCAGGCCGATCCCCAACCTGCGCATTATGCCTCTCCGACCGGCTCA
** * * * * * *
29599156 GTGCCTGTACGCTTGTTTCAAGGGTTGAGTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-A
385 GCACCCGGACGCTCGTTTCAAGGGTTGACTTAGGCATACAGAGCTCATTCCCAATCTAAGATCGA
* * * * * * * *
29599220 GATCAGATCGAGGGTTGTGGCAACAGGATCGACAGTACGCAGGGGGGACTGGGCTGGTCCC
450 -ACCAAAACGAGGGTTGTGACAACAAGATAGACAGCACGCAGGGGGGACTGGGCTGGTCCA
* * * * * * *** * *
29599281 CGACTTACGTATTCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGCTCGTTAGGTGGGTTAGCTTT
1 CGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTA
29599346 GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
66 GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * *
29599411 -TCGAAGGTTACCACAGCCAGACCAGTAGCAAGATCGACAGCA--CACAGGGGGGATCGGGTCGA
131 CT-GAGGGTT-GCACAG-CAGACCA-CAGCAGGATCGGCAGCATGCA-AGGGGGGA-CCGGTCTA
* ** * * * * **
29599473 TCCCTGGCTTACGCATTCTGCCTCTTTGGCTGGCTGAGTACCCGCACGCTCATTTTGTGGGTTGG
190 TCCCCGGCTTACGCATTCTGCCTCTCCGTC-GGCTGAGCACCCGCACGCCCGTTTCATGGGTTGG
* * *
29599538 CTTAGGCATACGGAGTTCATACCATGTCTAAGCCCTAGCCGAATCGAGGGTTGTGGTAGCAGGAC
254 CTTAGGCATAGGGAGTTCATACCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCAGGAC
29599603 CGGTAGC
319 CGGTAGC
29599610 GGGATCGACA
Statistics
Matches: 707, Mismatches: 109, Indels: 42
0.82 0.13 0.05
Matches are distributed among these distances:
500 3 0.00
501 119 0.17
502 1 0.00
503 1 0.00
505 3 0.00
510 1 0.00
511 1 0.00
512 3 0.00
513 149 0.21
514 419 0.59
515 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (509 bp):
CGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
CTGAGGGTTGCACAGCAGACCACAGCAGGATCGGCAGCATGCAAGGGGGGACCGGTCTATCCCCG
GCTTACGCATTCTGCCTCTCCGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
ATAGGGAGTTCATACCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCAGGACCGGTAGC
ATGCAGAAGGGGACCAGGCCGATCCCCAACCTGCGCATTATGCCTCTCCGACCGGCTCAGCACCC
GGACGCTCGTTTCAAGGGTTGACTTAGGCATACAGAGCTCATTCCCAATCTAAGATCGAACCAAA
ACGAGGGTTGTGACAACAAGATAGACAGCACGCAGGGGGGACTGGGCTGGTCCA
Found at i:29599383 original size:26 final size:26
Alignment explanation
Indices: 29599347--29599399 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29599337 GTTAGCTTTG
29599347 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29599373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29599399 G
1 G
29599400 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29599777 original size:367 final size:360
Alignment explanation
Indices: 29599277--29600104 Score: 877
Period size: 355 Copynumber: 2.3 Consensus size: 360
29599267 ACTGGGCTGG
* ** * * * * **
29599277 TCCCCGACTTACGTATTCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGCTCGTTAGGTGGGTT-A
1 TCCCCGACTTGCACATTATGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
29599341 GCTTTGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
66 -CTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* *
29599406 CCAGATCGAAGGTTACCACAGCCAGACCAGTAGCAAGATCGACAGCACACAGGGGGGA-TCGGGT
129 CCAGACCGAAGGTT------G-C-GA-CAGTAG---GATCGACAGCACACAAGGGGGACT-GGGT
* * * * * * *
29599470 CGATCCCTGGCTTACGCATTCTGCCTCTTTGGCTGGCTGAGTACCCGCACGCTCATTTTGTGGGT
181 CGATCCCCGACTTACACATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCCCATTTTGTGGGT
* * * * *
29599535 TGGCTTAGGCATACGGAGTTCATACCATGTCTAAGCCCTAGCC-GAATCGAGGGTTGTGGTAGC-
246 TGGCTTAGGCATACGGAGTTCATACAATGTCTAAGCCCCAGCCAG-ACCAAGGGTTGTGGCAGCG
* *
29599598 AGGACC-GG-TA-GC-G-G-GATCGACAACACGAAGAGGGGGATCGGGCTGA
310 A-GACCGGGTTAGGCAGCGAGACCGACAACACGAAGAGGGGGATCGGGCCGA
* * *
29599644 TCCTCGACTTGCACATTATGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTTTTGTGGGTTGA
1 TCCCCGACTTGCACATTATGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * **
29599709 CTTAGGCATATGGAGTTCATACCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATTGGAC
66 CTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
** ** * *
29599774 CAGACCGGGGGTTGCGACAGTAGGATCGGTAGCACGCAAGGGGGACTGGGTCGATCCCCGACTTG
130 CAGACCGAAGGTTGCGACAGTAGGATCGACAGCACACAAGGGGGACTGGGTCGATCCCCGACTTA
* *
29599839 CACATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCCCATTTTGTGGGTTGGCTTAGGCATAG
195 CACATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAC
*
29599904 GGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGAGACCGAGGGTTATG
260 GGAGTTCATACAATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGAGACC--GGGTTA-G
* * **
29599969 GCAGCGAGACCGATAGCACGTTGAGGGGGATCGGGCCGA
322 GCAGCGAGACCGACAACACGAAGAGGGGGATCGGGCCGA
* * * * *
29600008 TCCCCGGCTTGCGCATTATGCCTCTTCGGCC-AGCTCAGCGCCCGCACGCTCGTTTCGTGGATTG
1 TCCCCGACTTGCACATTATGCCTCTCCGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
29600072 ACTTATGCATACGGAGTTCATTCCAAGTCTAAG
65 ACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
29600105 ATCGAATCGG
Statistics
Matches: 387, Mismatches: 58, Indels: 35
0.81 0.12 0.07
Matches are distributed among these distances:
355 136 0.35
356 3 0.01
358 8 0.02
359 4 0.01
360 1 0.00
361 3 0.01
362 1 0.00
363 2 0.01
364 108 0.28
365 1 0.00
367 116 0.30
368 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (360 bp):
TCCCCGACTTGCACATTATGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
AGACCGAAGGTTGCGACAGTAGGATCGACAGCACACAAGGGGGACTGGGTCGATCCCCGACTTAC
ACATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATACG
GAGTTCATACAATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGAGACCGGGTTAGGCAG
CGAGACCGACAACACGAAGAGGGGGATCGGGCCGA
Found at i:29599980 original size:21 final size:21
Alignment explanation
Indices: 29599928--29599981 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
29599918 GTCTAAGCCC
* * *
29599928 CAGCCAGACCAAGGGTTGTGG
1 CAGCGAGACCGAGGGTTATGG
29599949 CAGCGAGACCGAGGGTTATGG
1 CAGCGAGACCGAGGGTTATGG
29599970 CAGCGAGACCGA
1 CAGCGAGACCGA
29599982 TAGCACGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.26, C:0.24, G:0.39, T:0.11
Consensus pattern (21 bp):
CAGCGAGACCGAGGGTTATGG
Done.