Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 317 of 402
Found at i:29600273 original size:26 final size:26
Alignment explanation
Indices: 29600237--29600314 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
29600227 TTTTCTTAGC
*
29600237 CATACGAAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
*
29600263 CATACGGAGTTCATTGCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
*
29600289 CATACGGAGTTCTTTCCCA-GTCTAAG
1 CATACGGAGTTCATT-CCATGTCTAAG
29600315 ATTTTGAGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
26 45 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAG
Found at i:29601258 original size:26 final size:26
Alignment explanation
Indices: 29601228--29601283 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
29601218 TGGGTTGACT
29601228 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
29601254 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
29601280 TAAG
1 TAAG
29601284 ATCGAACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:29601490 original size:185 final size:189
Alignment explanation
Indices: 29601173--29601615 Score: 506
Period size: 185 Copynumber: 2.3 Consensus size: 189
29601163 CTCGATTTGT
** ** * * *
29601173 GCATTCTACCTCTCCGGCCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACG
1 GCATTCTACCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
* *
29601238 GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGT
66 GAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACAGAGGGT
* ** * *
29601303 TGC-G-GT-AGC-AGGATTGACAGCACGTTGGGGGGGACCGGGTCGGTCCCCAGCTTGC
131 TGCGGAGTAAGCGAGGATCGACAGCACGCAGGGGGGGACCGGGCCGATCCCCAGCTTGC
* *
29601358 GCATTCTACCTCTCCGATCGACTGAGTGCCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTACCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * *
29601423 GAGTTTAT-TCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGACCAG-G
66 GAGTTCATCCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGA-CAGAG
* * * *
29601485 GGTTGCGGTAGTAGGACCAGCGGTAGGATCGACAGCACGCAGGGGTGGATCGGGCCGATCCTCGG
128 GGTTGCGG-AGT---A--AGC-G-AGGATCGACAGCACGCAGGGGGGGACCGGGCCGATCCCCAG
29601550 CTTGC
185 CTTGC
*
29601555 GCTTTCTACCTCT-CGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCAT
1 GCATTCTACCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCAT
29601616 CGACTTCATT
Statistics
Matches: 216, Mismatches: 27, Indels: 19
0.82 0.10 0.07
Matches are distributed among these distances:
184 4 0.02
185 109 0.50
186 3 0.01
188 2 0.01
194 3 0.01
196 46 0.21
197 49 0.23
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (189 bp):
GCATTCTACCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACAGAGGGT
TGCGGAGTAAGCGAGGATCGACAGCACGCAGGGGGGGACCGGGCCGATCCCCAGCTTGC
Found at i:29601830 original size:26 final size:26
Alignment explanation
Indices: 29601794--29601846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29601784 GTTGACTTAG
*
29601794 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
29601820 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
29601846 G
1 G
29601847 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29602327 original size:26 final size:26
Alignment explanation
Indices: 29602291--29602343 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29602281 GTTGGCTTAG
29602291 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTACCA-GTCTAA
29602317 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
29602343 G
1 G
29602344 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:29603019 original size:184 final size:183
Alignment explanation
Indices: 29602622--29603053 Score: 436
Period size: 184 Copynumber: 2.4 Consensus size: 183
29602612 CTCTGGTCAG
* * * *
29602622 CTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * ** * * * * * * *
29602687 ATACGGAGTTCATTCCAATCTAAGATTGGATCGGATCGAGGGTTACGGTAGCAGGATCGATAATA
66 ATACGAAGTTCATTCCAATCGAAGATCAGATCAGACCGAGGGTTACAGCAACAGGATCGACAACA
* * * ** * * * *
29602752 CGTAGGGGGGATCATGCCGTTCCCCAGCTTGCGTATTCTGCCTCTCCGACCGG
131 CGCAGAGGGGATCAGGCCAATCCACAGCTTGCGCATTCTACCTCTCCGACCGA
* * * * * * *
29602805 TTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTGAGC
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
29602870 ATACGAAGTTCATTCCCAGTCGAAGATCAGATCAGACCGAGGGTTGCAGCAACAGGATCGACAGC
66 ATACGAAGTTCATT-CCAATCGAAGATCAGATCAGACCGAGGGTTACAGCAACAGGATCGACAAC
* * * * **
29602935 ATGCAGAGGGGATCGGGCTAATCCACAGCTTGGGCATTCTACCTCTCCGGTCGA
130 ACGCAGAGGGGATCAGGCCAATCCACAGCTTGCGCATTCTACCTCTCCGACCGA
* * *
29602989 CTGAGCGCCCGCACGC-CTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAA
1 CTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
29603052 GC
64 GC
29603054 CCCAGCTGGA
Statistics
Matches: 200, Mismatches: 46, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
183 74 0.37
184 126 0.63
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (183 bp):
CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGAAGTTCATTCCAATCGAAGATCAGATCAGACCGAGGGTTACAGCAACAGGATCGACAACA
CGCAGAGGGGATCAGGCCAATCCACAGCTTGCGCATTCTACCTCTCCGACCGA
Found at i:29609883 original size:26 final size:26
Alignment explanation
Indices: 29609835--29609887 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29609825 GTTGACTTAG
* *
29609835 GCATACGAATTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
29609861 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
29609887 G
1 G
29609888 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29610317 original size:158 final size:158
Alignment explanation
Indices: 29609861--29610362 Score: 553
Period size: 158 Copynumber: 3.2 Consensus size: 158
29609851 CCCAGTCTAA
* *
29609861 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACAAAGTTCATTCCAT-GTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * ** * **
29609925 AGCACACAGGAGGGACCAGGCCAATCTTCGGCTTGCACATTCTGCCTCTCCGGCCTACTGAGCAC
65 AGCACACAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
29609990 CCACACGC-CTGTTTCGTGGGTTGGCTTAG
130 CCACACGCTC-GTTTCGTGGGTTGGCTTAG
* *** ** * * * * *
29610019 GTATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACCTAGGGTTGTGGCAACAGGACCGAC
1 GCATACAAAGTTCATTCCATGTCTAAGATC-AGACCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
29610083 AACACACAGAGGGGGATCGGGCCAATCCCCGGCATGCGCATTATGCCTCTCCGACCGGCTGAACG
65 AGCACACAG-GGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
** * *
29610148 CCTGCATGCTCGTTTCGTGGGTTGACTTAG
129 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
29610178 GCATACAAAGTTCATTCCCA-GTCTAAGATCGGACCGAACCAAAGGTTGCGGCAGTAGGATTGAC
1 GCATACAAAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * *
29610242 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTTCGGCCGGCTGAGCAC
65 AGCACACAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
*
29610307 CCACACGCTCGTTTCGTGGGTTGGCTTTG
130 CCACACGCTCGTTTCGTGGGTTGGCTTAG
29610336 GCATACAAAGTTCATTCCATGTCTAAG
1 GCATACAAAGTTCATTCCATGTCTAAG
29610363 CATACGGAGT
Statistics
Matches: 277, Mismatches: 60, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 152 0.55
159 118 0.43
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
GCATACAAAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACACAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
CACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:29610569 original size:26 final size:26
Alignment explanation
Indices: 29610533--29610585 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29610523 GTTGACTTAG
*
29610533 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
* *
29610559 GCATATGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
29610585 G
1 G
29610586 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:29610617 original size:197 final size:196
Alignment explanation
Indices: 29610242--29610744 Score: 521
Period size: 197 Copynumber: 2.6 Consensus size: 196
29610232 TAGGATTGAC
* * * *
29610242 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTTCGGCCGGCTGAGCAC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCAC
* * *
29610307 CCACACGCTCGTTTCGTGGGTTGGCTTTGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAG
66 CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCATGTCTAAGCATACGGAG
** * *
29610372 TTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGCAGGACTAGCAGCAGGATCGG
131 TGCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAGGACTAGCAGCAGGATCGG
29610437 T
196 T
* ** ** * *
29610438 AGCACGCAGGGGGGAATTGGGTTGATCCTTGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
1 AGCACGCAGGGGGG-ATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
* ** *
29610503 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGG
65 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCAT-CCCATGTCTAAGCATACGG
** *
29610567 AGTGCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCTGCAGCAGGA-T-----C--GA-C
129 AGTGCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAGGACTAGCAGCAGGATC
29610623 ---
194 GGT
* * * * * *
29610623 AGTACGCAGGTGGTATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGCCGGCTGAGCA
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGA-CCGGCTGAGCA
* * * * * *** *
29610687 CCCGCACGCCCGATTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCATGTCTAAGC
29610745 CCCAGTCGGA
Statistics
Matches: 261, Mismatches: 42, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
183 4 0.02
184 88 0.34
185 11 0.04
188 1 0.00
189 2 0.01
191 1 0.00
196 15 0.06
197 136 0.52
198 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (196 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCAC
CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCATGTCTAAGCATACGGAG
TGCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAGGACTAGCAGCAGGATCGG
T
Found at i:29610951 original size:158 final size:157
Alignment explanation
Indices: 29610571--29610991 Score: 348
Period size: 158 Copynumber: 2.7 Consensus size: 157
29610561 ATATGGAGTG
* * *
29610571 CATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGCTGCAGCAGGATCGACAGTACGCAGGTG
1 CATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGCAGCAGCAGGATCGACAGAACGAAGG-G
* * * * * *
29610635 GTATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCCCGA
64 GGACCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAGCACCCGCACGCCCGA
* * * *
29610700 TTCATGGGTTGGCTTAGGCATAGGGAGTT
129 TTCATGGATTGACTTAGGCATACGAAGTT
** * * ** * * * *
29610729 CATT-CCATGTCTAAGCCCCAGTC-GGACC-AAGGTTGTGGCAGCGGGA-CCAGCAGCATGCAGA
1 CATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGA-CAGAACG-A-A
* * * * * * * *
29610790 GGGGGACCGAGCTGATCCTCGGCTTGGGCATTATGGCTCTTCGGCTGACTCAGCGCCCGCACGCT
61 GGGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAGCACCCGCACGCC
* * * *
29610855 CGTTTCGTGGATTGACTTATGCGTACGAAGTT
126 CGATTCATGGATTGACTTAGGCATACGAAGTT
29610887 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGACAGAACGTAAGGGG
1 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGACAGAACG-AAGGGG
* * ** * * * *
29610952 GACCAAACCAATCGCCTGCTTGAGCATTCTGCCTCTCCAG
65 GACCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAG
29610992 TTAGCTGAGT
Statistics
Matches: 197, Mismatches: 56, Indels: 20
0.72 0.21 0.07
Matches are distributed among these distances:
156 2 0.01
157 26 0.13
158 138 0.70
159 28 0.14
160 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCGACAGAACGAAGGGGG
ACCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAGCACCCGCACGCCCGATT
CATGGATTGACTTAGGCATACGAAGTT
Found at i:29611063 original size:26 final size:26
Alignment explanation
Indices: 29611033--29611085 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29611023 GTTGGCTTAG
*
29611033 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29611059 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29611085 G
1 G
29611086 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29612002 original size:185 final size:183
Alignment explanation
Indices: 29611649--29612010 Score: 451
Period size: 185 Copynumber: 2.0 Consensus size: 183
29611639 ACTTAGGCAT
* * * *
29611649 ACAGAGTTCATTCCCAGTCTAAGATTAGATCAGACTGAGGGTTACGACAGTAGGATCGACAGCAC
1 ACAGAGTTCATTCCCAGTCTAAGATGAGACCAAACTGAGGGTTACGACAGCAGGATCGACAGCAC
* * * * * **
29611714 ACAGAAGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCCTCCGATCGGTTGAATGCTCGTAC
66 ACAGAAGGGATCGGGCTGATCCCCGACTTGCGCATTCTACCCTCCGATCGGCTGAACGCCCAAAC
*
29611779 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAA
131 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCAA
* * * *
29611832 ACAGAGTTCATTCCTAGTCTAAGATCGA-ACCAAACTGAGGGTTGCGGCAGCAGGATCTG-TAGC
1 ACAGAGTTCATTCCCAGTCTAAGAT-GAGACCAAACTGAGGGTTACGACAGCAGGATC-GACAGC
* ** * * *
29611895 ACGCAAGGGGGGATCGGG-TCGATCCCCGACTTGCGCATTCTACTTCTCCGGTCGGCTGAGCGCC
64 ACAC-AGAAGGGATCGGGCT-GATCCCCGACTTGCGCATTCTAC-CCTCCGATCGGCTGAACGCC
*
29611959 CAAACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
126 CAAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
29612011 GAGCCCCAAC
Statistics
Matches: 151, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
183 55 0.36
184 34 0.23
185 62 0.41
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (183 bp):
ACAGAGTTCATTCCCAGTCTAAGATGAGACCAAACTGAGGGTTACGACAGCAGGATCGACAGCAC
ACAGAAGGGATCGGGCTGATCCCCGACTTGCGCATTCTACCCTCCGATCGGCTGAACGCCCAAAC
GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCAA
Found at i:29612221 original size:26 final size:26
Alignment explanation
Indices: 29612168--29612221 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
29612158 TGGGTTGACT
* *
29612168 TAGGCATACGGAGTTCATCCTTAGTC
1 TAGGCATACGGAGTTCATCCTCAATC
*
29612194 TAGGCATACGGGGTTCATTCC-CAATC
1 TAGGCATACGGAGTTCA-TCCTCAATC
29612220 TA
1 TA
29612222 AGATCGGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCTCAATC
Found at i:29612482 original size:159 final size:157
Alignment explanation
Indices: 29612194--29612699 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 157
29612184 ATCCTTAGTC
* * * * ** ** * **
29612194 TAGGCATACGGGGTTCATTCC-CAATCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAAGATT
1 TAGGCATACGGAGTTCATTCCAC-GTCTAAGACCAGACTGGACCGAGGGTTGTGGCAGCAAGACC
* * * * *
29612258 GGCAGCACGCAGGGGGGATCGGGCTGACCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
65 GACAGAACGCAAGGGGGATCGGGCTGA-TCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
*
29612323 CGCCCGCACGCCCGTTTCGTGGGTTGGCT
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * * ***
29612352 TAGGCATAGGGAGTTCATTCCACGTCTACGCCCTAGTC-GGACCGAGGGTTGTGGCAGTGGGACC
1 TAGGCATACGGAGTTCATTCCACGTCTAAGACC-AGACTGGACCGAGGGTTGTGGCAGCAAGACC
* * * * * **
29612416 GCCAGCATGCAAAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCCATCGGCTGA
65 GACAGAACGC-AAGGGGGATCGGGCTGATCCC-GACTTGCGCATTCTGCCTCTCCGGTCGGCTGA
* *
29612481 GCGCCCGCACGCTTGTTTCGTGGGTTGACT
128 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * * *
29612511 TAGGCATACGGAGTTCATTCC-CAGTCTAAGATCGGACTGGATCGAGGGTTGTGGTAGCAAGATC
1 TAGGCATACGGAGTTCATTCCAC-GTCTAAGACCAGACTGGACCGAGGGTTGTGGCAGCAAGACC
* * * * *
29612575 GACAGAACGCAGGCGGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGA
65 GACAGAACGCAAG-GGGGATCGGGCTGATCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGGCTGA
* *
29612640 GCGTCCGCACGCTCTTTTCGTGGGTTGGCT
128 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* *
29612670 TAGGCATACGAAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCACGTCTAAG
29612700 CATACTGAGC
Statistics
Matches: 280, Mismatches: 59, Indels: 17
0.79 0.17 0.05
Matches are distributed among these distances:
158 59 0.21
159 221 0.79
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCACGTCTAAGACCAGACTGGACCGAGGGTTGTGGCAGCAAGACCG
ACAGAACGCAAGGGGGATCGGGCTGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCT
Found at i:29613088 original size:26 final size:26
Alignment explanation
Indices: 29613052--29613104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29613042 GTAGACATAG
*
29613052 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29613078 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29613104 G
1 G
29613105 ATCGGTTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29613202 original size:881 final size:867
Alignment explanation
Indices: 29611413--29613608 Score: 2511
Period size: 881 Copynumber: 2.5 Consensus size: 867
29611403 CTTCAAAGGT
* * *
29611413 CGATCCCTGGCTTGCGCATGT-TGCCTCTCCGATCGGCTGAGCGCCTGCAGGCCCGTTTCGTGGG
1 CGATCCCAGGCTTGCGCAT-TCTGCCTCTCCGGTCGGCTGAGCGCCTGCAAGCCCGTTTCGTGGG
*
29611477 TTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAACCGGACCGAGGGTTGTGGCAGCG
65 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC-CCAA-CGGACCGAGGGTTGTGGCAGCG
* * * * ** *
29611542 GGACTGGCAGCATGTAGAGGGCGACCGGGCCGATCCCTGACTTGCTCATTATGCCTCTCCGGCCA
128 GGACAGGCAGCATGCAAAGGGCGACCGGGCCGATCCCTGACTTGCACATTATGCCTCTCCGATCG
* * *
29611607 GCTCAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
193 GCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * ** *
29611672 ATTAGA-TCAGACTGAGGGTTACGACAGTAGGATCGACAGCACACAGAAGGGATCGGGCTGATCC
258 ATCAGACT-AGACTGAGGGTT-TGATAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCC
* ** * * *
29611736 CCGGCTTGCGCATTCTGCC-CTCCGATCGGTTGAATGC-T-CGTACGCTCGTTTCGTGGGTTGGC
321 CCGGCTTGCACATTCTGCCTCTCCGGCCGGCTG-A-GCGTCCGCACGCTCATTTCGTGGGTTGGC
* *
29611798 TTAGGCATACGGAGTTCATTCCATGTCTAAGCAAACAGAGTTCATTCCTAGTCTAAGATCGAACC
384 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACC
* * * * *
29611863 AAACTGAGGGTTGCGGCAGCAGGATCTGTAGCACGCAAGGGGGGATCGGGTCGATCCCCGACTTG
449 AAACTGAGGGTTGCGACAGCAGGAACAGCAGCACGCAAGGGGGGATCAGGTCGATCCCCGACTTG
* * ** *
29611928 CGCATTCTACTTCTCCGGTCGGCTGAGCGCCCAAACGCTTGTTTCGTGGGTTGGCTTAGGCATAC
514 CGCATTCTACCTCTCCGATCGGCTGAGCGCCCAAACGCTCATTTCATGGGTTGGCTTAGGCATAC
* * * * *
29611993 GAAGTTCATTCCATGTCTGAGCCCCAACCGAACTGAGGGTTGTGGCAGCAGGACCGACATCAGGA
579 GAAGTTCATTCCATGTCTAAGCCCCAACAGAACTGAAGGTTGTGGCAACAGGACCGACAGCAGGA
* ** * * **
29612058 TCGGCAGCACGCAGAGGAGGATTGGGCTTATCCCTGGCTTACGCATTATACATCTTTGACCAGCC
644 TCGACAGCACGCAGAGGAGGACCGGGCTGATCCCTAGCTTACGCATTATACATCTCCGACCAGCC
* * *
29612123 TCTTCGGCCAGCTGAGCGCCCACACGCTAATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
709 TCTTCGGCCAGCTGAGCACCCACACGCTAATTTCGTGGGTAGACATAGGCATACGGAGTTCATCC
** * * * *
29612188 TTAGTCTAGGCATACGGGGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGTAGCA
774 CCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGGAAGCA
* * * *
29612253 AGATTGGCAGCACGCAGGGGGGATCGGGC
839 AGATCGACAACACGCAGGGGGGACCGGGC
* * * * *
29612282 TGACCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
1 CGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCAAGCCCGTTTCGTGGGT
* * * *
29612347 TGGCTTAGGCATAGGGAGTTCATTCCACGTCTACGCCCTAGTCGGACCGAGGGTTGTGGCAGTGG
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-A-ACGGACCGAGGGTTGTGGCAGCGG
* * * * * *
29612412 GACCGCCAGCATGCAAAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCCATCGG
129 GACAGGCAGCATGCAAAGGGCGACCGGGCCGATCCCTGACTTGCACATTATGCCTCTCCGATCGG
* * *
29612477 CTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
194 CTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
29612542 TCGGACTGGA-TCGAGGGTTGTGGTAGCAAGATCGACAGAACGCAGGCGGGGATCGGGCCGATCC
259 TCAGACTAGACT-GAGGGTT-TGATAGCAGGATCGACAGCACGCAGG-GGGGATCGGGCCGATCC
* *
29612606 CCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCTTTTCGTGGGTTGGCTT
321 CCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTCGTGGGTTGGCTT
* * * *
29612671 AGGCATACGAAGTTCATTCCATGTCTAAGCATACTGAGCTCATTCCCAGTCTAAGATC-AGACCG
386 AGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCA
* * *
29612735 GA-TCGAGGTTTGCGACAGCAGGACCAACAGCAGGATCGACAGCAGGCGGCGGGA-CTAGGTCGA
450 AACT-GAGGGTTGCGACAGCAGG---AACAGCA-G--C-AC-GCAAG-GG-GGGATC-AGGTCGA
* * * * **
29612798 TCCCTGGCTTGCGCATTTTGCCTCTCCGAAT-GGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
503 TCCCCGACTTGCGCATTCTACCTCTCCG-ATCGGCTGAGCGCCCAAACGCTCATTTCATGGGTTG
*
29612862 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAACAG-ACTGAAGGTTGTGGCAACAGG
567 GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCC-AACAGAACTGAAGGTTGTGGCAACAGG
* * * * * * *
29612926 ATCGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGGGCTGAT-CCTCAGCTTACGCGTTATGC
631 ACCGACAGCAGGATCGACAGCACGCAGAGGAGGACCGGGCTGATCCCT-AGCTTACGCATTATAC
* * * * * **
29612990 CTCTCCGATC-GTCCTC-TCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTAGACATAGG
695 ATCTCCGACCAG-CCTCTTC-GGCCAGCTGAGCACCCACACGCTAATTTCGTGGGTAGACATAGG
* * ** *
29613053 CATACTGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGTTCGGACC
758 CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACC
** * *
29613118 AAGGGTTGTGGAAGCAGGATCGACAACACGCATGGGGGACCGGGC
823 AAGGGTTACGGAAGCAAGATCGACAACACGCAGGGGGGACCGGGC
* * * *
29613163 CGATCCCAGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGTGCCTGCAAGCCCGTTTCGTGGGT
1 CGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCAAGCCCGTTTCGTGGGT
* *
29613228 TGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCAGCGG
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAAC-GGACCGAGGGTTGTGGCAGCGG
* * * *
29613293 GACAGGCAGCACGCAAAGGGTGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCTTCGATCGG
129 GACAGGCAGCATGCAAAGGGCGACCGGGCCGATCCCTGACTTGCACATTATGCCTCTCCGATCGG
* * * * * *
29613358 CACAGTGCACGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAACA
194 CTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
29613423 TCCGACCAGACTAAGGG-TT-ACTACCGCAGGATCGATAGCACGCAGGGGCGGA-CTGGGTCAAT
259 TCAGACTAGACTGAGGGTTTGA-TA--GCAGGATCGACAGCACGCAGGGG-GGATC-GGGCCGAT
* ** *
29613485 CCCCGGCTTGCACATTCTGTCTCTCTAGCCTGCTGAGCG-CTCGCACGCTCATTTCGTGGGTTGG
319 CCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGTC-CGCACGCTCATTTCGTGGGTTGG
* * * *
29613549 CTTAGGCATATGGAGTTCATTCCATGTCTAAGCATGCGGAGTTCATTCCCAATCTAAGAT
383 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
29613609 TTTGAGCCAC
Statistics
Matches: 1113, Mismatches: 178, Indels: 60
0.82 0.13 0.04
Matches are distributed among these distances:
868 4 0.00
869 258 0.23
870 37 0.03
871 107 0.10
874 4 0.00
875 1 0.00
877 1 0.00
878 2 0.00
879 7 0.01
880 15 0.01
881 668 0.60
882 9 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (867 bp):
CGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCAAGCCCGTTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAACGGACCGAGGGTTGTGGCAGCGGGA
CAGGCAGCATGCAAAGGGCGACCGGGCCGATCCCTGACTTGCACATTATGCCTCTCCGATCGGCT
CAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACTAGACTGAGGGTTTGATAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGC
TTGCACATTCTGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAAACTGA
GGGTTGCGACAGCAGGAACAGCAGCACGCAAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTC
TACCTCTCCGATCGGCTGAGCGCCCAAACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTC
ATTCCATGTCTAAGCCCCAACAGAACTGAAGGTTGTGGCAACAGGACCGACAGCAGGATCGACAG
CACGCAGAGGAGGACCGGGCTGATCCCTAGCTTACGCATTATACATCTCCGACCAGCCTCTTCGG
CCAGCTGAGCACCCACACGCTAATTTCGTGGGTAGACATAGGCATACGGAGTTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGGAAGCAAGATCGA
CAACACGCAGGGGGGACCGGGC
Found at i:29614998 original size:159 final size:157
Alignment explanation
Indices: 29614710--29615204 Score: 613
Period size: 159 Copynumber: 3.1 Consensus size: 157
29614700 TAAGCACACT
* * * *
29614710 GAGTTCATTCCCA-GTCTAAGATCAAACCGAATCGAGGGTTGCGACAGCAGGATCGACAACATGC
1 GAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
* * * *
29614774 AGGGGGGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACG
65 AGGGGGGATCGGGTCGATCCCTGGCTTGCACATT-TGCCTCTCCGGTCGACTGAGTGCCCGCACG
* *
29614839 CCCGTTTCGTGGGTTGGCTTAGGCATAGG
129 CTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * * * *
29614868 GAGTTCATTCCATGTGTAAGCTCCAACCGGACCGAGGGTTGTGGCAGC-GAGACCGACAGCACGC
1 GAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAG-GATCGACAGCACGC
* * * * *
29614932 AGAGGGGGATCGGGTCGATCCCTGACTTGCCCATTATGCCTCTCTGGTCGGCTCAGTGCCCGCAC
65 AG-GGGGGATCGGGTCGATCCCTGGCTTGCACATT-TGCCTCTCCGGTCGACTGAGTGCCCGCAC
* *
29614997 GCTCGTTTCGTGGGTTGACTTAGGCATATG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
29615027 GAGTTCATTCC-TAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
1 GAGTTCATTCCAT-GTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
* * *
29615091 AGGGGGGATCGGGTC-AGTCCCCGGCTTATGCAC-TTTGCCTCTCCGGCCGATTGAGTGCCCGCA
65 AGGGGGGATCGGGTCGA-TCCCTGGC-T-TGCACATTTGCCTCTCCGGTCGACTGAGTGCCCGCA
*
29615154 CGCTCGTTTCATGGGTTGGCTTAGGCATACG
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
29615185 GAGTTCATTCCATGCCTAAG
1 GAGTTCATTCCATGTCTAAG
29615205 CATACGGAGT
Statistics
Matches: 287, Mismatches: 41, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
157 5 0.02
158 138 0.48
159 139 0.48
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
GGGGGGATCGGGTCGATCCCTGGCTTGCACATTTGCCTCTCCGGTCGACTGAGTGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:29616078 original size:26 final size:26
Alignment explanation
Indices: 29616048--29616100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29616038 GTTGGCTTAG
*
29616048 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
29616074 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29616100 G
1 G
29616101 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:29617368 original size:158 final size:159
Alignment explanation
Indices: 29616812--29617621 Score: 644
Period size: 158 Copynumber: 5.1 Consensus size: 159
29616802 CTAAGTATAT
* * * *
29616812 GGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTG-GGCAGCAGGATCGGTAGCACG
1 GGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACA
* ** * *
29616875 C--ATGGGGACCGGGCCGATCATCGGCTTG-AGCATTCTGCCTCTCCGGTCAGTTGAGCGCCCGC
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTGCA-CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
* * *
29616937 ACG-TACGTTTCGTAGGTTGGCTTGGGCATAG
129 ACGCT-CGTTTCGTGGGTTGGCTTAGGCATAC
* ** * * * * * *
29616968 GGAGTTCATTCCACGTCTAATTCCCAG-TCGAACAGAGGATTGTGGCAGCGGGATCGACAGCACA
1 GGAGTTCATTCCATGTCTAA-GACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACA
* * * * * * * *
29617032 TAGAGGGGCACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCCTGTA
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA
* * ** *
29617097 CGATCATTTCGTGGGTTAACTTAGGCATAT
130 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * *
29617127 GGAGTTCATTCCCA-GTCTAAGATCGGACGGGATCGAGGGTTGCGGCAGTAGGATTC-GCAGCAC
1 GGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGA-TCGGCAGCAC
* * ** * * * ** *
29617190 GCCGA-AAGGATCGAGCCGATCCCCGGCTTGCATATTCTGCCTCTCCGACCGGCTGAGCGCCTGC
64 ACAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
* *
29617254 ACGCCCGTTTCGTGGGTTGGCTT-GGCATAG
129 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * *
29617284 GGAGTTCATTTCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGC-GAGATCGGTAGCAC
1 GGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGTTGTGGCAGCAG-GATCGGCAGCAC
* * * * * * * *
29617347 ATAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGC
64 ACAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
* * * *
29617412 ACACTCATTTCGTGGGTTGACTTATGCATAC
129 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* ** * * * * * * *
29617443 AGAGTTTGTTCC-TAGTCTAAGATCAGACTGGACTGAAGGTTGAGGTAGCAGGATCGGCAGCACG
1 GGAGTTCATTCCAT-GTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACA
* * * * * ** *
29617507 CAG-GGGGGATCGGGTCGATCCCTGACTTGCACATTCT-ACTACTCCGACCGACTGAGCGCCCGC
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCT-CTCCGGTCGGCTGAGCGCCCGC
29617570 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
129 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
29617601 GGAGGTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
29617622 CATACGGAGT
Statistics
Matches: 500, Mismatches: 133, Indels: 40
0.74 0.20 0.06
Matches are distributed among these distances:
155 3 0.01
156 33 0.07
157 73 0.15
158 221 0.44
159 163 0.33
160 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACAC
AGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:29617380 original size:316 final size:314
Alignment explanation
Indices: 29616808--29617622 Score: 951
Period size: 316 Copynumber: 2.6 Consensus size: 314
29616798 CAGTCTAAGT
*
29616808 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGGGCAGCAGGATCGGTAGCA
1 ATATGGAGTTCATTCCCAGTCTAAGATCAGA-CGGA-CGAGGGTTGGGCAGCAGGATCGGCAGCA
* ** ** * *
29616873 CG-C-ATGGGGACCGGGCCGATCATCGGCTTG-AGCATTCTGCCTCTCCGGTCAGTTGAGCGCCC
64 CGCCGA-GGGGATCGGGCCGATCCCCGGCTTGCA-CATTCTGCCTCTCCGACCGGCTGAGCGCCC
* * * * ** *
29616935 GCACGTACGTTTCGTAGGTTGGCTTGGGCATAGGGAGTTCATTCCACGTCTAATTCCCAGTCGAA
127 GCACGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* *
29617000 CAGAGGATTGTGGCAGCGGGATCGACAGCACATAGAGGGGCACCGGGCCGATCCCCGGCTTGCGC
192 CAGAGGATTGTGGCAGCGAGATCGACAGCACATAGAGGGGCACCAGGCCGATCCCCGGCTTGCGC
* * *
29617065 ATTATGCCTCTCCGGTCGGCTCAACGCCTGTACGA-TCATTTCGTGGGTTAACTTAGGC
257 ATTATGCCTCTCCGGTCGGCTCAACACCCGCAC-ACTCATTTCGTGGGTTAACTTAGGC
* *
29617123 ATATGGAGTTCATTCCCAGTCTAAGATCGGACGGGATCGAGGGTTGCGGCAGTAGGATTC-GCAG
1 ATATGGAGTTCATTCCCAGTCTAAGATCAGAC-GGA-CGAGGGTTG-GGCAGCAGGA-TCGGCAG
** * * *
29617187 CACGCCGAAAGGATCGAGCCGATCCCCGGCTTGCATATTCTGCCTCTCCGACCGGCTGAGCGCCT
62 CACGCCGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCC
* * *
29617252 GCACGCCCGTTTCGTGGGTTGGCTT-GGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCCGGA
127 GCACGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* * ** * *
29617316 CCGAGGGTTGTGGCAGCGAGATCGGTAGCACATAGAGGGGGACCAGGTCGATCCCCGGCTTGCGC
192 CAGAGGATTGTGGCAGCGAGATCGACAGCACATAGAGGGGCACCAGGCCGATCCCCGGCTTGCGC
* * * *
29617381 ATTATGCCTCTTCGGTCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTATGC
257 ATTATGCCTCTCCGGTCGGCTCAACACCCGCACACTCATTTCGTGGGTTAACTTAGGC
** ** * * *
29617439 ATACAGAGTTTGTTCCTAGTCTAAGATCAGACTGGACTGAAGGTTGAGGTAGCAGGATCGGCAGC
1 ATATGGAGTTCATTCCCAGTCTAAGATCAGAC-GGAC-GAGGGTTG-GGCAGCAGGATCGGCAGC
* * * * * * *
29617504 ACGCAGGGGGGATCGGGTCGATCCCTGACTTGCACATTCT-ACTACTCCGACCGACTGAGCGCCC
63 ACGCCGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCT-CTCCGACCGGCTGAGCGCCC
* * *
29617568 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGC
127 GCACGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
29617623 ATACGGAGTT
Statistics
Matches: 422, Mismatches: 67, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
314 1 0.00
315 48 0.11
316 277 0.66
317 94 0.22
318 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (314 bp):
ATATGGAGTTCATTCCCAGTCTAAGATCAGACGGACGAGGGTTGGGCAGCAGGATCGGCAGCACG
CCGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
GCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACAGA
GGATTGTGGCAGCGAGATCGACAGCACATAGAGGGGCACCAGGCCGATCCCCGGCTTGCGCATTA
TGCCTCTCCGGTCGGCTCAACACCCGCACACTCATTTCGTGGGTTAACTTAGGC
Found at i:29617646 original size:26 final size:26
Alignment explanation
Indices: 29617595--29617647 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29617585 GTTGGCTTAG
*
29617595 GCATACGGAGGTCATTCCATGTCTAA
1 GCATACGGAGGTCATTCCATGCCTAA
*
29617621 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGGTCATT-CCATGCCTAA
29617647 G
1 G
29617648 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCATGCCTAA
Found at i:29620395 original size:26 final size:26
Alignment explanation
Indices: 29620358--29620410 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29620348 GTTGGCTTAG
**
29620358 GCATACGAAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
29620384 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29620410 G
1 G
29620411 ATTTTGAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:29621451 original size:26 final size:26
Alignment explanation
Indices: 29621415--29621481 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
29621405 GTTGACTTAG
*
29621415 GCATACAGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTTTAA
29621441 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTTTAA
*
29621467 GCATATGGAGTTCAT
1 GCATACGGAGTTCAT
29621482 TCCCAGACTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTTTAA
Found at i:29621493 original size:26 final size:26
Alignment explanation
Indices: 29621415--29621493 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
29621405 GTTGACTTAG
* **
29621415 GCATACAGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGACTAA
**
29621441 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGACTAA
*
29621467 GCATATGGAGTTCATTCCC-AGACTAA
1 GCATACGGAGTTCA-TCCCTAGACTAA
29621493 G
1 G
29621494 ATCAGATCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 44 0.92
27 4 0.08
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGACTAA
Found at i:29627939 original size:158 final size:158
Alignment explanation
Indices: 29627674--29627978 Score: 362
Period size: 158 Copynumber: 1.9 Consensus size: 158
29627664 GGATCAGACT
* * *
29627674 AGACTGAGGGTTACGGTAGTAGGATCGACAGCACGTAGGGGGGACCAGGCCGATCCCCAGCTTGG
1 AGACTGAGGGTTACGGTAGTAGGACCGACAGCACGTAGGGGGGACCAGGCCAATCCCCAGCTTGC
* * ** ** * *
29627739 GCATTCTGCCTCTCCAATCGGCTGAGTGCCCGTACGTCCGTTTCATGCGATGGCTTAGGCATGCG
66 GCATTCTACCTCTCCAACCGGCTGAACGCCCACACCTCCGTTTCATGCGATGGCTTAGGCATACG
*
29627804 GAGTTTATTCCATGTCTTAGCCCCAGCC
131 GAGTTCATTCCATGTCTTAGCCCCAGCC
** * * *
29627832 AGACTGAGGGTTGTGGTAGTGGGACCG-GAGCACGTAGAGGGGGACCGGGCCAATCCCCAGCTTG
1 AGACTGAGGGTTACGGTAGTAGGACCGACAGCACGTAG-GGGGGACCAGGCCAATCCCCAGCTTG
* ** * * *
29627896 CGTATTCTACCTCTCCGGCCGGCTGAACGCCCACACACT-CGTTTCGTGGGTTGGCTTAGGCATA
65 CGCATTCTACCTCTCCAACCGGCTGAACGCCCACAC-CTCCGTTTCATGCGATGGCTTAGGCATA
*
29627960 TGGAGTTCATTCCATGTCT
129 CGGAGTTCATTCCATGTCT
29627979 AAGCATACAG
Statistics
Matches: 121, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
157 9 0.07
158 111 0.92
159 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGACTGAGGGTTACGGTAGTAGGACCGACAGCACGTAGGGGGGACCAGGCCAATCCCCAGCTTGC
GCATTCTACCTCTCCAACCGGCTGAACGCCCACACCTCCGTTTCATGCGATGGCTTAGGCATACG
GAGTTCATTCCATGTCTTAGCCCCAGCC
Found at i:29627991 original size:26 final size:26
Alignment explanation
Indices: 29627962--29628013 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
29627952 TAGGCATATG
29627962 GAGTTCATTCCATGTCTAAGCATACA
1 GAGTTCATTCCATGTCTAAGCATACA
29627988 GAGTTCATTCCATGTCTAAGCATACA
1 GAGTTCATTCCATGTCTAAGCATACA
29628014 TAGTCTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCATGTCTAAGCATACA
Found at i:29628723 original size:26 final size:26
Alignment explanation
Indices: 29628693--29628745 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29628683 GTTGACTTAG
29628693 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29628719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29628745 G
1 G
29628746 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29629020 original size:159 final size:156
Alignment explanation
Indices: 29628719--29629220 Score: 398
Period size: 159 Copynumber: 3.2 Consensus size: 156
29628709 CCCAGTCTAA
**** * * * * ** *
29628719 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAGATCGAGGGTTGCGACAGTAGGATTGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCCAACCAGACCGAGGGTTGTGCCAGCAGGACCGAC
* ** * * * * * * **
29628783 AGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGATTGGCTGAGTGC
65 AACACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCG-TCGGCTCAACGC
* * * * *
29628848 CTGTACGCCCGTTTCATGGGTTAGCTTAG
129 CCGAATGCTCGTTTCGT-GGTTAGCTTAG
* * *
29628877 GCATAGGGAGTTCATTCCATGTTTAAGACCCAACCGGACCGAGGGTTGTGCCAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGTTGTGCCAGCAGGACCGACA
*
29628942 ACACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTCAACGC
66 ACACACAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCC-GTCGGCTCAACGC
*
29629007 CCGAATGCTCGTTTCGTGGTTTGACTTAG
129 CCGAATGCTCGTTTCGTGGTTAG-CTTAG
*** * * ** *
29629036 GCATACGGAGTTCATTCC-TAGTCTAAGATTTAATCAGATCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCCAACCAGACCGAGGGTTGTGCCAGCAGGACCGAC
* * * ** * * * *
29629100 AGCACATAGGGAGGGACCGGGCCAATCCCCGACTTATGCATTCTGCCTCTCTGGCCGG-TTAAGC
65 AACACACAGGG-GGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTC-CGTCGGCTCAA-C
* * * *
29629164 GCCCGCATGCTCATTTTGTAGGTTGGCTTAG
127 GCCCGAATGCTCGTTTCGT-GGTTAGCTTAG
*
29629195 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
29629221 CCATACGGAG
Statistics
Matches: 278, Mismatches: 56, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 64 0.23
159 204 0.73
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGTTGTGCCAGCAGGACCGACA
ACACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGTCGGCTCAACGCCC
GAATGCTCGTTTCGTGGTTAGCTTAG
Found at i:29629232 original size:26 final size:26
Alignment explanation
Indices: 29629196--29629246 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29629186 TTGGCTTAGG
29629196 CATACAGAGTTCATTCC-ATGTCTAAC
1 CATACAGAGTTCATTCCTA-GTCTAAC
*
29629222 CATACGGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATTCCTAGTCTAA
29629247 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAC
Found at i:29629425 original size:197 final size:185
Alignment explanation
Indices: 29629036--29629603 Score: 613
Period size: 197 Copynumber: 3.0 Consensus size: 185
29629026 TTTGACTTAG
* ** * * * *
29629036 GCATACGGAGTTCATTCCTAGTCTAAGATTTAATCAGATCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAATTCATTCCTAGTCTAAGATCAAAACAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * *
29629101 GCACATAGGGAGGGACCGGGCCAATCCCCGACTTATGCATTCTGCCTCTCTGGCCGG-TTAAGCG
66 GCACGTAGGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAA-CG
* * * *
29629165 CCCGCATGCTCATTTTGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
130 CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * *
29629221 CCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGTAGGACTAACA
1 GCATACGGAATTCATTCCTAGTCTAAGATCAAAACAGACCGAGGGTT--G-C----GG--T---A
* ** *
29629286 GCAGGATCGGCAGCACGTAGGGGGGGACCGGGTCGATCCTCAACTTGCACATTCTGTCTCTCCGG
54 GCAGGATCGGCAGCACGTAGGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGG
* *
29629351 CCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCATAGTC
119 CCGGCTGAACGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTC
29629415 TAA
183 TAA
*
29629418 GCATACGGAATTCATTCCTAGTCTAAGATCAAAACAGACCGAGGGTTGCGGTAGTAGGATCGGCA
1 GCATACGGAATTCATTCCTAGTCTAAGATCAAAACAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * *
29629483 GCACGCA-GGGGGGACTGGGTCGATCCAT-GGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCG
66 GCACGTAGGGGGGGACCGGGTCGATCC-TCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAACG
* * *
29629546 CCCGCACGCCCGTTTTGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
29629602 GC
1 GC
29629604 CCCAACCAGA
Statistics
Matches: 318, Mismatches: 49, Indels: 33
0.80 0.12 0.08
Matches are distributed among these distances:
184 93 0.29
185 63 0.20
187 1 0.00
188 1 0.00
190 2 0.01
192 2 0.01
194 2 0.01
195 1 0.00
196 5 0.02
197 145 0.46
198 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAATTCATTCCTAGTCTAAGATCAAAACAGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCACGTAGGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAACGC
CCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:29629431 original size:26 final size:26
Alignment explanation
Indices: 29629392--29629444 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29629382 GTTGACTTAG
*
29629392 GCATACGGAGTTCA-TCCATAGTCTAA
1 GCATACGGAATTCATTCC-TAGTCTAA
29629418 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
29629444 G
1 G
29629445 ATCAAAACAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:29629729 original size:159 final size:158
Alignment explanation
Indices: 29629418--29629762 Score: 444
Period size: 159 Copynumber: 2.2 Consensus size: 158
29629408 CATAGTCTAA
* ** * * * * *
29629418 GCATACGGAATTCATTCC-TAGTCTAAGATCAAAACAGACCGAGGGTTGCGGTAGTAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAACCAGACCGAGGGTTGAGGCAGTAGGACCGGC
* * *
29629482 AGCACGCAGGGGGGACTGGGTCGATCCATGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGCAGGGGGGACTGGGTCGATCCACGGCTTGTGCATTCTACCTCTCCGACAGGCTGAGCGC
* * *
29629547 CCGCACGCCCGTTTTGTGTGTTGGCTTAG
130 CCGCACGCCCATTTCGTGGGTTGGCTTAG
* *
29629576 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGAGGCAGTGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGAGGCAGTAGGACCGGCA
* * **
29629641 GCACGCAGAGGGTGA-TCGGG-CTGATCCCCGGCTTGTGCATTCTACCTCTCCGGTAGGCTGAGC
66 GCACGCAG-GGGGGACT-GGGTC-GATCCACGGCTTGTGCATTCTACCTCTCCGACAGGCTGAGC
*
29629704 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
128 GCCCGCACGCCCATTTCGTGGGTTGGCTTAG
29629735 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
29629763 ATACAAAGTT
Statistics
Matches: 161, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
158 63 0.39
159 98 0.61
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGAGGCAGTAGGACCGGCA
GCACGCAGGGGGGACTGGGTCGATCCACGGCTTGTGCATTCTACCTCTCCGACAGGCTGAGCGCC
CGCACGCCCATTTCGTGGGTTGGCTTAG
Found at i:29631998 original size:159 final size:158
Alignment explanation
Indices: 29631547--29632365 Score: 685
Period size: 159 Copynumber: 5.2 Consensus size: 158
29631537 CCCAGTCTAA
* * * * *
29631547 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * *
29631611 AGAACGCAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT-TCGACCGGTTGAGC
65 AGCACGCAGAGGGGGATC-GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCT-GACCGGCTGAGC
*
29631674 ATCCGCACGC-CCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCC-TTTCGTGGGTTGGCTTAG
* * * * * * **
29631705 GCATAGGGAGTTCATTCCATGTCTAAG-CCAG-TTGAACCGAGGGTTGTGGCAGC-GTGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAG-GATCGAC
* * * * * * * * *
29631767 AGCACGTAGAGGGGGA-CTGGGTCGATCCTCGGCTTGTGCATTATGCCTCTCCGACTGGCTCAGT
65 AGCACGCAGAGGGGGATC-GGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGC
* ** * *
29631831 GCCTACACGCTCCTTTTGTGGGTTGACTTAG
128 ACCCGCACGCTCCTTTCGTGGGTTGGCTTAG
* * * * **
29631862 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCGAACTAAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
29631926 GGTACGCA-AGGGGGGACCGAGCTGATCCCCTGCTTGCACATTCTGCCTCTCTGACCGTCTGAGC
65 AGCACGCAGA-GGGGGATCG-GCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGC
* *
29631990 ACCCACACGC-CCATTTCATGGGTTGGCTTAG
128 ACCCGCACGCTCC-TTTCGTGGGTTGGCTTAG
* ** * * * * **
29632021 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCAAGGGTTGTGCCAACGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGAC
* * *
29632085 AGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCT-TCGACCGGCTCAGC
65 AGCACGCAGAGGGGGATCGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCT-GACCGGCTGAGC
* * * * * *
29632149 GCCCGTACACTCATTTCGTGGGTTGACTTAT
128 ACCCGCACGCTCCTTTCGTGGGTTGGCTTAG
* * *
29632180 GCATACGGACTTCATTCCCA-GTCTAAGATCAGACTGGACCAAGGGTTATGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
29632244 AGCACACAGTGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGGCAGACTGAGCA
65 AGCACGCAGAGGGGGATC-GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCA
* ** *
29632309 CCCGCATGCTTGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCCTTTCGTGGGTTGGCTTAG
29632339 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
29632366 CATACGGAGT
Statistics
Matches: 512, Mismatches: 124, Indels: 49
0.75 0.18 0.07
Matches are distributed among these distances:
155 1 0.00
156 34 0.07
157 88 0.17
158 39 0.08
159 333 0.65
160 17 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGGATCGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCACC
CGCACGCTCCTTTCGTGGGTTGGCTTAG
Found at i:29632176 original size:318 final size:315
Alignment explanation
Indices: 29631547--29632366 Score: 1051
Period size: 318 Copynumber: 2.6 Consensus size: 315
29631537 CCCAGTCTAA
* * * *
29631547 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAGCAGGATCGACA
*
29631612 GAACGCAGGGGGGATCGGGCCGATCCCC-GACTTGCGCATTCTGCCTCT-TCGACCGGT-TGAGC
66 GAACGCAGGGGGGATCGGGCTGATCCCCTG-CTTGCGCATTCTGCCTCTCT-GACC-GTCTGAGC
* * *
29631674 ATCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCAGTT
128 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTC
* * * * * *
29631738 GAACCGAGGGTTGTGGCAGCGTGACCGGTAGCACGTAGAGGGGGACTGGGTCGATCCTCGGCTTG
193 GAACCAAGGGTTGTGCCAACGGGACCGGTAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTG
* * * * *
29631803 TGCATTATGCCTCTCCGACTGGCTCAGTGCCTACACGCTCCTTTTGTGGGTTGACTTAG
258 CGCATTATGCCTCTCCGACCGGCTCAGCGCCTACAC-CTCATTTCGTGGGTTGACTTAG
* * * * *
29631862 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAACTAAGGGTTACGGCAGCAGGATCGACG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAGCAGGATCGACA
* * * *
29631927 GTACGCAAGGGGGGACCGAGCTGATCCCCTGCTTGCACATTCTGCCTCTCTGACCGTCTGAGCAC
66 GAACGC-AGGGGGGATCGGGCTGATCCCCTGCTTGCGCATTCTGCCTCTCTGACCGTCTGAGCAC
* *
29631992 CCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
130 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGTCG
* *
29632057 GACCAAGGGTTGTGCCAACGGGATCGGTAGCACGCAGAGGGGGA-TCGGGTCGATCCCCGGCTTG
194 AACCAAGGGTTGTGCCAACGGGACCGGTAGCACGCAGAGGGGGACT-GGGTCGATCCCCGGCTTG
* *
29632121 CGCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACA-CTCATTTCGTGGGTTGACTTAT
258 CGCATTATGCCTCTCCGACCGGCTCAGCG-CC-TACACCTCATTTCGTGGGTTGACTTAG
* * * *
29632180 GCATACGGACTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTATGGCAGCAAGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAGCAGGATCGACA
* * * * * * *
29632245 GCACACAGTGGGGGATCGGGCTGAT-CCCTGGCTTGCGCATTCTACCTCTCCGGCAGACTGAGCA
66 GAACGCAG-GGGGGATCGGGCTGATCCCCT-GCTTGCGCATTCTGCCTCTCTGACCGTCTGAGCA
* ** *
29632309 CCCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
29632367 ATACGGAGTT
Statistics
Matches: 435, Mismatches: 59, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
315 63 0.14
316 99 0.23
317 10 0.02
318 257 0.59
319 2 0.00
320 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (315 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAGCAGGATCGACA
GAACGCAGGGGGGATCGGGCTGATCCCCTGCTTGCGCATTCTGCCTCTCTGACCGTCTGAGCACC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGAA
CCAAGGGTTGTGCCAACGGGACCGGTAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGC
ATTATGCCTCTCCGACCGGCTCAGCGCCTACACCTCATTTCGTGGGTTGACTTAG
Found at i:29632369 original size:26 final size:26
Alignment explanation
Indices: 29632339--29632390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29632329 GTTGGCTTAG
29632339 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
29632365 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
29632391 AATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:29633386 original size:158 final size:161
Alignment explanation
Indices: 29633097--29633593 Score: 408
Period size: 158 Copynumber: 3.1 Consensus size: 161
29633087 GCAAATTGAT
* * * * **
29633097 TTCATTCCCA-GTCTAAG-ATCAGACCAAACCGAGGGTTGCT-ACAGCA-GATCGACAGCAC-GC
1 TTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTG-TGGCAACAGGATCGACAGCACATA
* * ** * * ** * * ** * *
29633157 AGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTTCGGTCGGTTGAGTGCCTG-TAC
64 AGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGACAC
* *
29633221 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
129 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * *
29633254 TTCATTCCATGTCTAAGCCCCAG-TCG-ATCGAGGGTTGTGGCAAC-GAGATCGACAGCACAT-A
1 TTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAACAG-GATCGACAGCACATAA
* * * * * * *
29633315 GAGGGGGACCGGGTCGGTCCCTGGCTTACGCATTATGCCTTTTCGACTGGCTCAGCACCCG-CAC
65 G-GGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGACAC
* *
29633379 GCTCGTTTCATGGGTTGACTTATGCATACGGAG
129 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * * *
29633412 TTCATTCC-TAGTCT-AGGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATTGACAGCACGTAA
1 TTCATTCCAT-GTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAACAGGATCGACAGCACATAA
* * * * * *
29633475 GGGGGGACTGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCGGTTGAGCGCCCGTACAC
65 GGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCG---AC
*
29633540 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
127 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
*
29633575 TTCATTCCATTTCTAAGCA
1 TTCATTCCATGTCTAAGCA
29633594 TATGGAGTTC
Statistics
Matches: 267, Mismatches: 55, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
155 1 0.00
156 16 0.06
157 34 0.13
158 91 0.34
159 74 0.28
160 3 0.01
163 44 0.16
164 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (161 bp):
TTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAACAGGATCGACAGCACATAAG
GGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGACACGC
TCGTTTCATGGGTTGGCTTAGGCATACGGAG
Found at i:29633615 original size:26 final size:26
Alignment explanation
Indices: 29633565--29633617 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29633555 GTTGGCTTAG
*
29633565 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
29633591 GCATATGGAGTTCATTCTCA-GTCTAA
1 GCATACGGAGTTCATTC-CATGTCTAA
29633617 G
1 G
29633618 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:29634064 original size:158 final size:157
Alignment explanation
Indices: 29633655--29634102 Score: 473
Period size: 158 Copynumber: 2.9 Consensus size: 157
29633645 CAGGACCAGT
* * *
29633655 AGCAGGATCGACAGCACGCAGGGGGGGATAAGGTCGATCCCTGACTTCGCATTCTGCCTTTCTGG
1 AGCAGGATCGACAGCACGCA-GGGGGGAT-CGGTCGATCCCTGGCTTCGCATTCTGCCTCTCTGG
* *
29633720 CCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTT-TGGCATACAGAGTTCATT-CCATGT
64 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAT-GCATACAGAGTTCATTCCCATGT
* * *
29633783 CTAAGCCCCAGCCAGATCGAGGGTTGTGGC
128 CTAAGCACCAGCCAGACCAAGGGTTGTGGC
* * ** * *
29633813 AGCGGGACCGACAGCACATAGAGGGGGATC---CGATCCCCGGCTTACGCATTATGCCTCT-TCG
1 AGCAGGATCGACAGCACGCAG-GGGGGATCGGTCGATCCCTGGCTT-CGCATTCTGCCTCTCT-G
** * * * * *
29633874 ATCGGCTCAGCGCTCACACGCTCGTTTGGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GT
63 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCCATGT
* * * *
29633938 CTCAG-ATCAGATCGGACCAAGGGTTGTGGC
128 CTAAGCACCAG-CCAGACCAAGGGTTGTGGC
* * *
29633968 CGCAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCATCTCTGG
1 AGCAGGATCGACAGCACGCAGGGGGGATC-GGTCGATCCCTGGCTT-CGCATTCTGCCTCTCTGG
* * *
29634033 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGATTTCATT-CCATGTC
64 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCCATGTC
29634097 TAAGCA
129 TAAGCA
29634103 TGCAAAGTTC
Statistics
Matches: 231, Mismatches: 46, Indels: 25
0.76 0.15 0.08
Matches are distributed among these distances:
154 23 0.10
155 96 0.42
156 4 0.02
157 4 0.02
158 102 0.44
159 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGGTCGATCCCTGGCTTCGCATTCTGCCTCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCCATGTCTA
AGCACCAGCCAGACCAAGGGTTGTGGC
Found at i:29634884 original size:26 final size:26
Alignment explanation
Indices: 29634807--29634878 Score: 119
Period size: 25 Copynumber: 2.8 Consensus size: 26
29634797 GTTGACTTAG
* *
29634807 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
29634833 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
29634858 GCATATGGAGTTCATTCCCAG
1 GCATATGGAGTTCATTCCCAG
29634879 AGTAAGATCA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 24 0.56
26 19 0.44
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:29635174 original size:159 final size:157
Alignment explanation
Indices: 29634982--29635359 Score: 395
Period size: 157 Copynumber: 2.4 Consensus size: 157
29634972 CGGCCGGCTG
* * * *
29634982 AGCGCCCGTACGCCCATTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * ** * *
29635047 AGTCGGACTAAGGGTTGTGGCAGTGGGACC-AGCAGCACGTAGAGGGGGACCGAGCTGATGCC-C
66 AATCGGACCAAGGGTTGCGGCAGCAGGACCGA-CAGCACG--CAGGGGGACCGAGCCGAT-CCAC
* *
29635110 GGCTTGCACATTATGCCTTTTCAACT-GGCTC
127 GGCTTGCACATTATGCC-TCTCAACTCGACTC
** * **
29635141 AGCGCCCGCACGCTTGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC
1 AGCGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * * * *
29635205 GAATCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGACCGGGCCGATCCACGTC
65 CAATCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGACCGAGCCGATCCACGGC
* * *** *
29635270 TTGCGCATTCTGCCTCTCCGGTCGACTG
130 TTGCACATTATGCCTCTCAACTCGACTC
*
29635298 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29635360 ATACAGAGTT
Statistics
Matches: 179, Mismatches: 35, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
156 9 0.05
157 86 0.48
159 80 0.45
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCGCCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AATCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGACCGAGCCGATCCACGGCT
TGCACATTATGCCTCTCAACTCGACTC
Found at i:29635332 original size:157 final size:155
Alignment explanation
Indices: 29634858--29635358 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 155
29634848 CCCAGTCTAA
* ** * * * *
29634858 GCATATGGAGTTCATTCCCA-GAGTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATTGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-ATCGGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * * * *
29634922 AGCACACAAGAGGGATCGGGCTGATCCTCGACTTACGCATTTTGCCTCTCCGGCCGGCTGAGCGC
64 AGCACGC-AGGGGGACCGGGCTGATCC-CGACTTGCGCATTATGCCTCTCCGGACGGCTGAGCGC
* * *
29634987 CCGTACGCCCATTCCATGGGTTGGCTTAG
127 CCGCACGCTCATTCCGTGGGTTGGCTTAG
* ** * ** * * * *
29635016 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTAAGGGTTGTGGCAGTGGGA-CCAGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAATCGGACCGAGGGTTGCGGTAGTAGGATCGA-C
* * * * * * * *
29635080 AGCACGTAGAGGGGGACCGAGCTGATGCCCGGCTTGCACATTATGCCTTTTC-AACTGGCTCAGC
64 AGCACG--CAGGGGGACCGGGCTGAT-CCCGACTTGCGCATTATGCCTCTCCGGAC-GGCTGAGC
** *
29635144 GCCCGCACGCTTGTTCCGTGGGTTGACTTAG
125 GCCCGCACGCTCATTCCGTGGGTTGGCTTAG
*
29635175 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AATCGGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * * *
29635239 AGCACGCAGGGGGACCGGGCCGATCCACGTCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
64 AGCACGCAGGGGGACCGGGCTGATCC-CGACTTGCGCATTATGCCTCTCCGGACGGCTGAGCGCC
*
29635304 CGCACGCTCATTTCGTGGGTTGGCTTAG
128 CGCACGCTCATTCCGTGGGTTGGCTTAG
29635332 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
29635359 CATACAGAGT
Statistics
Matches: 267, Mismatches: 63, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
156 5 0.02
157 92 0.34
158 48 0.18
159 115 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAATCGGACCGAGGGTTGCGGTAGTAGGATCGACAG
CACGCAGGGGGACCGGGCTGATCCCGACTTGCGCATTATGCCTCTCCGGACGGCTGAGCGCCCGC
ACGCTCATTCCGTGGGTTGGCTTAG
Found at i:29635368 original size:26 final size:26
Alignment explanation
Indices: 29635332--29635384 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29635322 GTTGGCTTAG
*
29635332 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29635358 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29635384 G
1 G
29635385 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29635731 original size:159 final size:158
Alignment explanation
Indices: 29635420--29635873 Score: 413
Period size: 159 Copynumber: 2.9 Consensus size: 158
29635410 AACAGGACCA
* *
29635420 GCAGCAGGATCGACAGCACGTA-AGGGGGATCGAGCCGATCCCCGACTTGCACATTCTGCCTCTC
1 GCAGCAGGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * * * * * *
29635484 TGACTGGCTGAGCGCCCGCACGC-CTATTTCGTTGGTTAGA-TGAGGCATAGGGAGTTCATTCCA
66 CGACCGGCT-AGAGACCGCACGCTC-ATTTCGTGGGTT-GACTTAGGCATACGAAGTTCATTCCA
* *
29635547 TGTCTAAGCCCTAGCCAGACCGAGGGTT-GT
128 TGTCTAAGCACTAGCCAGACCGAGGGTTCCT
* * * * * * *
29635577 GGTAGCGGGACCGACAGCACGCAGAGGGGGACCGAGTCGATCCCCAACTTGCGCATTATGCCTCT
1 -GCAGCAGGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCT
*
29635642 CCGACCGGCTCAGAGTCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
65 CCGACCGGCT-AGAGACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCA
* * ** **
29635707 -GTCTAAG-ATTGGACTGGATTGAGGGTTCCT
128 TGTCTAAGCACTAG-CCAGACCGAGGGTTCCT
* * * * * * *
29635737 GCAGTAGGATCGATAGCATGTAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTC
1 GCAGCAGGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * * *
29635801 CGACCTGCT-GAGCACCTGCACACTCATTTCATGGGTTGGCTTAGGCATAC-AGAGTTTATTCCA
66 CGACCGGCTAGAG-ACC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCA
29635864 TGTCTAAGCA
128 TGTCTAAGCA
29635874 TACGGAGTTC
Statistics
Matches: 239, Mismatches: 46, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 6 0.03
158 108 0.45
159 117 0.49
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCAGCAGGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTC
CGACCGGCTAGAGACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGT
CTAAGCACTAGCCAGACCGAGGGTTCCT
Found at i:29635733 original size:512 final size:511
Alignment explanation
Indices: 29634933--29636108 Score: 1421
Period size: 513 Copynumber: 2.3 Consensus size: 511
29634923 GCACACAAGA
* * * * * * *
29634933 GGGATCGGGCTGATCCTCGACTTACGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCCCA
1 GGGATCGGGCCGATCCCCGACTTGCGCATTTTGCCTCT-CGACTGGCTGAGCGCCCGCACGCCTA
* * **
29634998 TTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTAAGGGTT
65 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* * * **
29635063 GTGGCAGTGGGACCAGCAGCACGTAGAGGGGGACCGAGCTGATGCCCGGCTTGCACATTATGCCT
130 GTGGCAGCGGGACCA-CAGCACGCAGAGGGGGACCGAGCTGATCCCCAACTTGCACATTATGCCT
* * * * ** *
29635128 TTTCAACTGGCTCAGCGCCCGCACGCTTGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
194 CTCCAACCGGCTCAGAGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCC
* *
29635193 CAGTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA-GGGGGACCGG
259 CAGTCTAAGATCGAATCGGACCGAGGGTTCCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGG
* ** * * *
29635257 GCCGATCCACGTCTTGCGCATTCTGCCTCTCCGGTC-GACTGAGCGCCCGCACGCTCATTTCGTG
324 GCCGATCCACGGCTTGCGCATTCTGCCTCTCCGACCTG-CTGAGCACCCGCACACTCATTTCATG
* *
29635321 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
388 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAA
* * *
29635386 TCA-AACCGGACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGATCGACAGCACGTA-AGG
453 T-AGAACCAGACCGACGGTTGCGGCAACAGGACCAGCAGCAGGATCGACAGCACGTAGA-G
* * *
29635445 GGGATCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCTGACTGGCTGAGCGCCCGCACGCCTA
1 GGGATCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTC-GACTGGCTGAGCGCCCGCACGCCTA
* * * * * * *
29635510 TTTCGTTGGTTAGATGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
65 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* *
29635575 GTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGAG-TCGATCCCCAACTTGCGCATTATGCC
130 GTGGCAGCGGGACC-ACAGCACGCAGAGGGGGACCGAGCT-GATCCCCAACTTGCACATTATGCC
* * *
29635639 TCTCCGACCGGCTCAGAGTCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
193 TCTCCAACCGGCTCAGAGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTC
* * ** * * * * * *
29635704 CCAGTCTAAGATTGGA-CTGGATTGAGGGTTCCTGCAGTAGGATCGATAGCATGTAGGGGGGATC
258 CCAGTCTAAGATCGAATC-GGACCGAGGGTTCCGGCAGCAGGATCGACAGCACGCAGGGGGGACC
* *
29635768 GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAGCACCTGCACACTCATTTCAT
322 GGGCCGATCCACGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAGCACCCGCACACTCATTTCAT
* *
29635833 GGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAA
387 GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAA
* * * * * *
29635898 ATAGGATCAGACCGACGGTTGCGGCAGCAGGACTAGCTGTAGGATCGACAGCACGTAGAG
452 ATAGAACCAGACCGACGGTTGCGGCAACAGGACCAGCAGCAGGATCGACAGCACGTAGAG
* * * * * * * *
29635958 GGGACCGGGCCGATCCCTGGCTTGCGCATTTTGCCTTTCCAATCGGCTAAGCGCCCGCAC-ACTC
1 GGGATCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCGACT-GGCTGAGCGCCCGCACGCCT-
* *** *
29636022 GTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATATCTAAGCCCCAGTCGGACCGAGGGT
64 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
* *
29636087 TATGGCAGCAGGACCAACAGCA
129 TGTGGCAGCGGGACC-ACAGCA
29636109 AGATCGGTAG
Statistics
Matches: 556, Mismatches: 98, Indels: 19
0.83 0.15 0.03
Matches are distributed among these distances:
511 3 0.01
512 262 0.47
513 289 0.52
514 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (511 bp):
GGGATCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCGACTGGCTGAGCGCCCGCACGCCTAT
TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTG
TGGCAGCGGGACCACAGCACGCAGAGGGGGACCGAGCTGATCCCCAACTTGCACATTATGCCTCT
CCAACCGGCTCAGAGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
GTCTAAGATCGAATCGGACCGAGGGTTCCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGC
CGATCCACGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAGCACCCGCACACTCATTTCATGGGT
TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATAG
AACCAGACCGACGGTTGCGGCAACAGGACCAGCAGCAGGATCGACAGCACGTAGAG
Found at i:29635881 original size:26 final size:26
Alignment explanation
Indices: 29635845--29635896 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29635835 GTTGGCTTAG
*
29635845 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
29635871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29635897 AATAGGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29636261 original size:26 final size:26
Alignment explanation
Indices: 29636225--29636275 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29636215 GTTGACTTAG
29636225 GCATACGGAGTTCA-TCCCAAGTCTAT
1 GCATACGGAGTTCATTCCC-AGTCTAT
29636251 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
29636276 AGATCGAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:29636520 original size:368 final size:365
Alignment explanation
Indices: 29635938--29636822 Score: 1076
Period size: 368 Copynumber: 2.4 Consensus size: 365
29635928 GACTAGCTGT
* * * * *
29635938 AGGATCGACAGCACGTAGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTTTGCCTTTCCAATCG
1 AGGATCGACAGCACGAAG-GGGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGATCG
* * ** *
29636003 GCTAAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATATCTAAG
64 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
29636068 CCCC-AGTCGGACCGAGGGTTATGGCAGCAGGACCAACAGCAAGATCGGTAGAACACAGTGGGGG
129 CCCCAACT-GGACCGAGGGTTATGGCAGCAGGACCAACAACAAGATCGATAGAACACAGAGGGGG
* * * * * * *
29636132 ATCGGGTTGATCCTCGACTTGCATATTATGCCTCTCCGGTTGGCCTCTCCGGCC-GACTGAGCGC
193 ATCGGGCTAATCCCCGACTTGCACATTATGCCTCTCCGATCGACCTCTCCGGCCAG-CTGAGCGC
* *
29636196 CCGTATGCTCATTTCGTAAGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTATGCATACGGAG
257 CCGTACG-TCATTTCGTAAGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAG
* *
29636261 TTCATTCCCAGTCTAAGATC-GAACCGAACCAAGGGTTACAGCAGC
321 TTCATTCCCAATCTAAGATCAGAACAGAA-CAAGGGTTACAGCAGC
* *
29636306 AGGATCGACAGCACGCAGGGAGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCG
1 AGGATCGACAGCACGAAGGG-GGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGATCG
* *
29636371 GTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
64 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
**** ** * * *
29636436 CCCCAACTGGACCGAGGGTTATGGCAGCAGGATTGGCAACGGGATCGATAGCACGCAGAGGGGGT
129 CCCCAACTGGACCGAGGGTTATGGCAGCAGGACCAACAACAAGATCGATAGAACACAGAGGGGGA
** * *
29636501 TCGGGCTAATCCCCGACTTGTGCATTATGCCTCTCCGATCGACCTCTCCGGTCAGCTGAGTGCCC
194 TCGGGCTAATCCCCGACTTGCACATTATGCCTCTCCGATCGACCTCTCCGGCCAGCTGAGCGCCC
*
29636566 GTACGTCATTTCGTAAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
259 GTACGTCATTTCGTAAGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTC
* * *
29636631 ATTCCCAATCTAAGATCAGATCAGAACAAGGGTTGCGGCAGC
324 ATTCCCAATCTAAGATCAGAACAGAACAAGGGTTACAGCAGC
** ** * **
29636673 AGGATCGGTAGCACGTAAGGGGGATCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTCTGGCCG
1 AGGATCGACAGCACG-AAGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCG
* * * * * * *
29636738 ACTGAGCGCCCACACGCCCATTTCATGGGTTGGTTTAAGG-ATAGGGAGTTCATTCCATGTCTAA
64 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT-AGGCATACGGAGTTCATTCCATGTCTAA
* * *
29636802 GCCCTAGCCGGACCGAGGGTT
128 GCCCCAACTGGACCGAGGGTT
29636823 GTGGTAACGA
Statistics
Matches: 443, Mismatches: 66, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
367 207 0.47
368 232 0.52
369 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (365 bp):
AGGATCGACAGCACGAAGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAACTGGACCGAGGGTTATGGCAGCAGGACCAACAACAAGATCGATAGAACACAGAGGGGGATC
GGGCTAATCCCCGACTTGCACATTATGCCTCTCCGATCGACCTCTCCGGCCAGCTGAGCGCCCGT
ACGTCATTTCGTAAGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCAT
TCCCAATCTAAGATCAGAACAGAACAAGGGTTACAGCAGC
Found at i:29636621 original size:26 final size:26
Alignment explanation
Indices: 29636592--29636644 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29636582 GTTGACTTAG
*
29636592 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
29636618 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
29636644 G
1 G
29636645 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:29637136 original size:26 final size:26
Alignment explanation
Indices: 29637100--29637171 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
29637090 TAGGCATACA
*
29637100 GAGTTCATTCCATGTGTAAGCAAACG
1 GAGTTCATTCCATGTCTAAGCAAACG
*
29637126 GAGTTCATTCCATGTCTAAGCAAATG
1 GAGTTCATTCCATGTCTAAGCAAACG
29637152 GAGTTCATTCCCA-GTCTAAG
1 GAGTTCATT-CCATGTCTAAG
29637172 ATTTTGAGCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 40 0.93
27 3 0.07
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
GAGTTCATTCCATGTCTAAGCAAACG
Found at i:29643729 original size:26 final size:26
Alignment explanation
Indices: 29643693--29643745 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29643683 GTTGACTTAG
29643693 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29643719 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29643745 G
1 G
29643746 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29644246 original size:26 final size:26
Alignment explanation
Indices: 29644194--29644246 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29644184 GTTGGCTTAG
*
29644194 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
29644220 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
29644246 G
1 G
29644247 ATCGGACCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:29644545 original size:26 final size:26
Alignment explanation
Indices: 29644515--29644565 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29644505 GTTGACTTAG
*
29644515 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
29644541 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
29644566 TGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29644897 original size:159 final size:158
Alignment explanation
Indices: 29644649--29645041 Score: 371
Period size: 158 Copynumber: 2.5 Consensus size: 158
29644639 GTGCATTCTG
* * * ** * * * *
29644649 CCTCTCCGACCGGTTGAGCGCCTGCACGCCCA-TTGGTGGGTTGGCTTAGGCATAAGGAATTCAT
1 CCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
** ** *** * * * * *
29644713 TCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCGGCAGCGGGACCGGTAGCACGCAGAGGGGGA
66 TCCATGTCTAAGAACGGATTGGACCGAGGGTTGCGACAGCAGGACCGATAACAAGCA-AGGGGGA
* *
29644778 CCAGGCCGATCCCCGGCTTCTACATTATG
130 CCAGGCCGATCCCCAGCTTCTACATTATA
* * **
29644807 CCTCTCCGATCGGGTCAGTGCCCACACGCTCATTTCGTGGGTTGAG-TTAGGCATAC-GAGGTTC
1 CCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCGTGGGTTG-GCTTAGGCATACGGA-GTTC
* * * * *
29644870 ATTCCCA-GTCTAAGAACGGATTGGACCGAGGGTTTCGACAGTAGGATCGATAACAAGTATGGGG
64 ATT-CCATGTCTAAGAACGGATTGGACCGAGGGTTGCGACAGCAGGACCGATAACAAGCAAGGGG
* * * * *
29644934 GATCGGGCCGATCCCCAGCTTGTGCATTCTA
128 GACCAGGCCGATCCCCAGCTTCTACATTATA
* *
29644965 CCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
29645030 TCCATGTCTAAG
66 TCCATGTCTAAG
29645042 CATATGGAGT
Statistics
Matches: 188, Mismatches: 40, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 117 0.62
159 63 0.34
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGAACGGATTGGACCGAGGGTTGCGACAGCAGGACCGATAACAAGCAAGGGGGAC
CAGGCCGATCCCCAGCTTCTACATTATA
Found at i:29645051 original size:26 final size:26
Alignment explanation
Indices: 29645015--29645067 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29645005 GTTGGCTTAG
29645015 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
29645041 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29645067 G
1 G
29645068 GTCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29645182 original size:184 final size:184
Alignment explanation
Indices: 29644866--29645223 Score: 482
Period size: 184 Copynumber: 1.9 Consensus size: 184
29644856 GGCATACGAG
* * * * * *
29644866 GTTCATTCCCAGTCTAAGAACGGATTGGACCGAGGGTTTCGACAGTAGGATCGATAACAAGTATG
1 GTTCATTCCCAGTCTAAGAACAGATCGGACCGAGGGTTACGACAGCAGGATCGACAACAAGTAAG
* ** ** *
29644931 GGGGATCGGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTC
66 GGGGACCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCCGACCAACTGAGCACCAGCACGCTC
** *
29644996 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGA
131 ATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATATGGA
** ** * *
29645050 GTTCATTCCCAGTCTAAGGTCAGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAAG
1 GTTCATTCCCAGTCTAAGAACAGATCGGACCGAGGGTTACGACAGCAGGATCGACAACAAGTAAG
* * * * *
29645115 GGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAACTGAGCGCCAGCATGCTC
66 GGGGACCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCCGACCAACTGAGCACCAGCACGCTC
29645180 ATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTA
131 ATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTA
29645224 GGCCCCAACC
Statistics
Matches: 148, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
184 148 1.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GTTCATTCCCAGTCTAAGAACAGATCGGACCGAGGGTTACGACAGCAGGATCGACAACAAGTAAG
GGGGACCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCCGACCAACTGAGCACCAGCACGCTC
ATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATATGGA
Found at i:29645400 original size:26 final size:26
Alignment explanation
Indices: 29645370--29645423 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
29645360 GTTGACTTAG
*
29645370 GCATACGGAGTTCATCCTCA-GTCTAA
1 GCATACGGAGATCATCC-CACGTCTAA
*
29645396 GCATACGGAGATCATTCCACGTCTAA
1 GCATACGGAGATCATCCCACGTCTAA
29645422 GC
1 GC
29645424 CCCAGTCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGATCATCCCACGTCTAA
Found at i:29646088 original size:158 final size:154
Alignment explanation
Indices: 29645606--29646106 Score: 450
Period size: 159 Copynumber: 3.2 Consensus size: 154
29645596 CCCAATCTAA
* *
29645606 GCATACGGAGTTCATTCTCA-GTCTAAGATCAATCC-ATACCGAGGGTTGCGGCAGTAGGATCAA
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAA-CCGA-ACCGAGGGTTGTGGCAGTAGGATCGA
* * * * * * * *
29645669 CAGCACGCAGGGGGACCGGGCCAATCTCCGGCTTGTGCATTCTACCTCTCCGACTGACTGAGCCC
63 CAGCACACAGGGGGATCGGGCCGATC-CCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
29645734 CCGCACGTCCGTTTCGTGGGTTGACTTAG
127 CCGCACCT-CGTTTCATGGGTTGGCTTAG
* ** * ** ** * *
29645763 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTAAGGGTTGTGGCAGCGGGACCGATA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCGAACCGAGGGTTGTGGCAGTAGGATCGACA
* * * * * * * * * * *
29645828 GTACGTAAAGGGGGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTTCGGCCTGCTCAGTGC
65 GCAC--ACAGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * ** *
29645893 CCGCACGCTAGTTTCACGATTTGGCTTAT
127 CCGCAC-CTCGTTTCATGGGTTGGCTTAG
29645922 GCATACGGAGTTCATTGCCA-GTCTAAGATCGAACCGAACCGAGGGTTGTGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AACCGAACCGAGGGTTGTGGCAGTAGGATCGAC
* *
29645986 AGCACCCAGGGGAGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGC
64 AGCACACAGGGG-GATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
29646051 TCGCACACTCGTTTTATGGGTTGGCTTAG
127 CCGCAC-CTCGTTTCATGGGTTGGCTTAG
*
29646080 GCAGACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
29646107 CATACGGAGT
Statistics
Matches: 261, Mismatches: 71, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
156 2 0.01
157 59 0.23
158 85 0.33
159 110 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCGAACCGAGGGTTGTGGCAGTAGGATCGACAG
CACACAGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
ACCTCGTTTCATGGGTTGGCTTAG
Found at i:29646792 original size:26 final size:26
Alignment explanation
Indices: 29646756--29646860 Score: 158
Period size: 26 Copynumber: 4.0 Consensus size: 26
29646746 GTTGGCTTAG
29646756 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
29646782 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
29646808 GCATACGAAGTTCCTTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
29646834 GCATACGGAGTTCGTTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
29646860 G
1 G
29646861 ATTTTGAGCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
26 69 0.96
27 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:29647560 original size:26 final size:26
Alignment explanation
Indices: 29647530--29647582 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29647520 GTTGACTTAG
*
29647530 GCATACGGATTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
29647556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29647582 G
1 G
29647583 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29648022 original size:158 final size:158
Alignment explanation
Indices: 29647556--29648082 Score: 541
Period size: 158 Copynumber: 3.3 Consensus size: 158
29647546 CTCAGTCTAA
* * *
29647556 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGC-AACAGGACCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCTAGCAAGA-CGGT
* * * * * *
29647620 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTGGCACATTCTGCCTCTCCGATCGGCTGAGCGC
65 AGCACGAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGC
* *
29647685 CTGTACG-TCCATTTTGTGGGTTGGCTTAG
130 CCGTACGCT-CATTTCGTGGGTTGGCTTAG
* ** *
29647714 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCT-GCGAGACTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGCTAGCAAGAC-G
* * * * * *
29647776 GTAGCACGAAGAGAGGGATCGGGCCTATCCCCGGCTTGCGTATTATACCTCTCCGGTCGGCTCAG
63 GTAGCACGAAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAG
* * *
29647841 CGCCCGTACGCTCGTTTCATGGGTTGACTTAG
127 CGCCCGTACGCTCATTTCGTGGGTTGGCTTAG
* * * ** **
29647873 GCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGACTGAAGGTT-ACGCTAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCTAGCAAGA-CGGT
* * * * *
29647937 AGCACGTAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACTC
65 AGCACGAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGC
*
29648002 CCGCACGCTCATTTCGTGGGTTGGCTTAG
130 CCGTACGCTCATTTCGTGGGTTGGCTTAG
* * *
29648031 GCATATGGAGTTAATT-CCATGTCTAAG-TCCCAG-TCGGACCAAGGGTTGTGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT--CAGATCGGACCGAGGGTTGTGGC
29648083 AGTAAGGACC
Statistics
Matches: 297, Mismatches: 58, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
157 8 0.03
158 162 0.55
159 122 0.41
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCTAGCAAGACGGTA
GCACGAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCC
CGTACGCTCATTTCGTGGGTTGGCTTAG
Found at i:29648238 original size:26 final size:26
Alignment explanation
Indices: 29648208--29648260 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29648198 GTTGACTTAG
29648208 GCATACAAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* * *
29648234 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
29648260 G
1 G
29648261 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:29649979 original size:26 final size:26
Alignment explanation
Indices: 29649943--29649995 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29649933 GCTGGCTTAG
*
29649943 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29649969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29649995 G
1 G
29649996 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29650016 original size:184 final size:185
Alignment explanation
Indices: 29649600--29650016 Score: 439
Period size: 184 Copynumber: 2.3 Consensus size: 185
29649590 GTTGGCTTAG
* * * * **
29649600 GCATAGGGAGTTCATT-CCATGTCTAAGCTCCAGCT-GGACCGAGGGTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-CAGATCGGACCGAGGGTTGCGGCAGCAGGACCGG
* * *
29649663 CAGCACACAGAGGGGGACCGAGTCGATCCCCAACTTGCGCATTATGCCTCTTCGGCTGGCTCAGC
64 CAGCACACAGAGGGGGACCGAGTCGATCACCAACTTACGCATTATGCCTCTTCGGCTGGCTCAAC
* * * *
29649728 ACCCGTACGATCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGCCTAA
129 ACCCGTACGACCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATCCCCAGCCTAA
* * * ** * * *
29649785 GCATACAGAGTTCATTCCTAGTCTAAGATC-GAACCGGACTAAGGGTTGCGGCAGCATGATCGTC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGTTGCGGCAGCAGGACCGGC
* * * ** * * * *
29649849 AGCACACA-AGGGGGATCGGGTCGATCATCGGCTTACGCATTCTGCCTCTTCGGTTGGTTGAACA
65 AGCACACAGAGGGGGACCGAGTCGATCACCAACTTACGCATTATGCCTCTTCGGCTGGCTCAACA
* * * * * *
29649913 CCCGTACGCCCGTTTTATGGGCTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAA
130 CCCGTACGACCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATCCCCA-GCCTAA
29649969 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
29650017 TGGTAGTAAG
Statistics
Matches: 186, Mismatches: 41, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
183 4 0.02
184 128 0.69
185 52 0.28
186 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACCGGCA
GCACACAGAGGGGGACCGAGTCGATCACCAACTTACGCATTATGCCTCTTCGGCTGGCTCAACAC
CCGTACGACCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATCCCCAGCCTAA
Found at i:29650831 original size:26 final size:26
Alignment explanation
Indices: 29650795--29650847 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29650785 GTTGACTTAG
29650795 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29650821 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29650847 G
1 G
29650848 TTCAAAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29651346 original size:26 final size:26
Alignment explanation
Indices: 29651296--29651348 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29651286 GTTGGCCTAG
*
29651296 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
29651322 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
29651348 G
1 G
29651349 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:29651699 original size:26 final size:26
Alignment explanation
Indices: 29651662--29651714 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29651652 GTTGACTTAG
29651662 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
29651688 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
29651714 G
1 G
29651715 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29652197 original size:156 final size:157
Alignment explanation
Indices: 29651688--29652365 Score: 373
Period size: 158 Copynumber: 4.3 Consensus size: 157
29651678 CCCAGTCTAA
* * * *
29651688 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGACCGAGGGTTGCGACAGCAGG-ATCGA
1 GCATACGGAGTTCATT-CCAGTCTAAGATAGGACCA-GACCGA-GGTTGCGATAGC-GGAACCGA
** * * ** * * * ** * *
29651751 CAGCACGCAG-GGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTACCCCTCCAGCCAGCTGAGC
62 CAGCACGCAGAGGGGGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGC
* * * *
29651815 ACCCGCATGCCCTTTTCGTGGGTTGGCTTAG
127 GCCCGCACGCCCATTTCGTGGGTTGACTTAG
* ** * ** * ** * *
29651846 GCATA-GGAAGGTCATTCCAAGTCTAAGCCCA-AACCAGATTGAGGGTTGTGGCAGCGGGA-CTA
1 GCATACGG-AGTTCATTCC-AGTCTAAG-ATAGGACCAGACCGA-GGTTGCGATAGCGGAACCGA
* ** * * * * * **
29651908 GTAGCACATAAAGGGGGATC-GAGCCGATCCCCGGCTTACGCA-TATGCCTCT-TCGGTTGGCTC
62 -CAGCACGCAGAGGGGGACCAG-GCCAATCCCTGGCTTGCGCATTATGCCTCTCT-GGCCGGCTC
* * * * *
29651970 AACACCCGCACG--CTTGTTCTTGGGTTGACTTAT
124 AGCGCCCGCACGCCCAT-TTCGTGGGTTGACTTAG
* *
29652003 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGATAGCGG-ATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATAGGACCAGACCGA-GGTTGCGATAGCGGAACCGACA
* * * * * * * *
29652067 GCACGCAG-GGGGGTCCGGGCTAATCCCCT-GCTTGCG-ATTCTGTCTCTCTGGCCGGTTGAGCT
64 GCACGCAGAGGGGGACCAGGCCAAT-CCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCG
* * * *
29652129 CCCGTATGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCCCATTTCGTGGGTTGACTTAG
* * * * *
29652159 GCATAGGGAGTTCATTCCATGTCTAAGCCCTA-G-CCAGACCGAGGTTGTGGTAGCGGAACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAG--ATAGGACCAGACCGAGGTTGCGATAGCGGAACCGAC
* * *
29652222 AGCACGTAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCTGGCTCAGCG
63 AGCACGCAGAGGGGGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCG
* *
29652287 CCCGCACGCTCATTTCGTAGGTTGACTTAG
128 CCCGCACGCCCATTTCGTGGGTTGACTTAG
* * * * *
29652317 GCATACAGAGTTCATTCCTAGTATAAGATTGGACCGGATCGAAGGTTGC
1 GCATACGGAGTTCATTCC-AGTCTAAGATAGGACCAGACCG-AGGTTGC
29652366 AGCAGCATGA
Statistics
Matches: 388, Mismatches: 101, Indels: 61
0.71 0.18 0.11
Matches are distributed among these distances:
154 1 0.00
155 51 0.13
156 77 0.20
157 86 0.22
158 142 0.37
159 31 0.08
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATAGGACCAGACCGAGGTTGCGATAGCGGAACCGACAGC
ACGCAGAGGGGGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCC
GCACGCCCATTTCGTGGGTTGACTTAG
Found at i:29652269 original size:313 final size:315
Alignment explanation
Indices: 29651688--29652395 Score: 840
Period size: 313 Copynumber: 2.3 Consensus size: 315
29651678 CCCAGTCTAA
*
29651688 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-AGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATCA-GACCGAGGGTTGCGACAGCAGGATCGAC
* *
29651752 AGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTACCCCTCCAGCCAGCTGAGCAC
65 AGCACGCAGGGGGGACCGGGTCAATCCCCAGCTTGCGCATTCTACCCCTCCAGCCAGCTGAGCAC
*
29651817 CCGCATGCCCTTTTCGTGGGTTGGCTTAGGCATAGGAAGGTCATTCCAAGTCTAAGCCCAAACCA
130 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGGTCATTCCAAGTCTAAGCCCAAACCA
** * * * *
29651882 GATTGAGGGTTGTGGCAGCGGGACTAGTAGCACATAAAGGGGGATCGAGCCGATCCCCGGCTTAC
195 GACCGAGGGTTGTGGCAGCGGAACCAGCAGCACATAAAGGGGGACCGAGCCGATCCCCGGCTTAC
* * * *
29651947 GCATATGCCTCT-TCGGTTGGCTCAACACCCGCACGCT-TGTTCTTGGGTTGACTTAT
260 GCATATGCCTCTCT-GGCTGGCTCAACACCCGCACGCTAT-TTCGTAGGTTGACTTAG
*
29652003 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGATAGC-GGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * ** * ** * * *
29652067 GCACGCAGGGGGGTCCGGG-CTAATCCCCTGCTTGCG-ATTCTGTCTCTCTGGCCGGTTGAGCTC
66 GCACGCAGGGGGGACCGGGTC-AATCCCCAGCTTGCGCATTCTACCCCTCCAGCCAGCTGAGCAC
* * * * * *
29652130 CCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCA
130 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGGTCATTCCAAGTCTAAGCCCAAACCA
* * * * * *
29652195 GACCGA-GGTTGTGGTAGCGGAACCGGCAGCACGTAGAGGGGGACC-AGGCCGATCCCTGGCTTG
195 GACCGAGGGTTGTGGCAGCGGAACCAGCAGCACATAAAGGGGGACCGA-GCCGATCCCCGGCTTA
* *
29652258 CGCATTATGCCTCTCTGGCTGGCTCAGCGCCCGCACGCTCATTTCGTAGGTTGACTTAG
259 CGCA-TATGCCTCTCTGGCTGGCTCAACACCCGCACGCT-ATTTCGTAGGTTGACTTAG
* * * * * * * * *
29652317 GCATACAGAGTTCATTCCTAGTATAAGATTGGACCGGATCGAAGGTTGC-AGCAGCATGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGA-CAGCAGGATCGAC
*
29652381 AGCACACAGGGGGGA
65 AGCACGCAGGGGGGA
29652396 TCAGGCTTGT
Statistics
Matches: 333, Mismatches: 51, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
311 1 0.00
312 49 0.15
313 112 0.34
314 98 0.29
315 72 0.22
316 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCAATCCCCAGCTTGCGCATTCTACCCCTCCAGCCAGCTGAGCACC
CGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGGTCATTCCAAGTCTAAGCCCAAACCAG
ACCGAGGGTTGTGGCAGCGGAACCAGCAGCACATAAAGGGGGACCGAGCCGATCCCCGGCTTACG
CATATGCCTCTCTGGCTGGCTCAACACCCGCACGCTATTTCGTAGGTTGACTTAG
Found at i:29652510 original size:26 final size:25
Alignment explanation
Indices: 29652468--29652519 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
29652458 GTTGGCTTAG
29652468 GCATACAGATTCATT-CCATGTCTAA
1 GCATACAGATTCATTCCCA-GTCTAA
*
29652493 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGA-TTCATTCCCAGTCTAA
29652519 G
1 G
29652520 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 8 0.33
26 13 0.54
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGATTCATTCCCAGTCTAA
Found at i:29652858 original size:26 final size:26
Alignment explanation
Indices: 29652821--29652926 Score: 158
Period size: 26 Copynumber: 4.0 Consensus size: 26
29652811 GTTGACTTGG
*
29652821 GCATACGGAGTTTATCCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* * *
29652847 GCATACGAAGTTCATCCTAAGTCTAT
1 GCATACGGAGTTCATCCCAAGTCTAA
*
29652873 GCATACGGAGTTCATCCCAAGTTTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
29652899 GCATACGGAGTTCATCCCCAAGTCTAA
1 GCATACGGAGTTCAT-CCCAAGTCTAA
29652926 G
1 G
29652927 ATCAGACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 59 0.84
27 11 0.16
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:29653265 original size:159 final size:156
Alignment explanation
Indices: 29652899--29653321 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 156
29652889 CCAAGTTTAA
* * **
29652899 GCATACGGAGTTCATCCCCAAGTCTAAGATCAGACTGGA-TCGAGGGTTGCTGCAATAGGATCGA
1 GCATAGGGAGTTCAT-TCC-AGTCTAAGATCAGACTGGACT-GAGGGTTG-TGCAGCAGGATCGA
* * * * * *
29652963 CAGCACACAGGGTGGATC-GAGCCGATCCCCGGCTTGCACATTCTCCCTCTCTGACCGGCTGAGC
62 CAGCACGCAGGGGGGATCAG-GCCGATCCCCGGCTTGCGCATTATCCCTCTCTGACCAGCTCAGC
* * *
29653027 GCCCGCATGCCCGGTTCATGGGTTGGCTTAG
126 GCCCGCACGCCCGGTTCATGGGATGACTTAG
* ** * * *
29653058 GTATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTAGCAGCGGGACCGAC
1 GCATAGGGAGTTCATTCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGT-GCAGCAGGATCGAC
* * *
29653122 AGCACGCAGAGGGGGATCAGGCCGATCCCCAGCTTGCGCATTATGCCTCT-TCGACCAGCTCAGT
63 AGCACGCAG-GGGGGATCAGGCCGATCCCCGGCTTGCGCATTATCCCTCTCT-GACCAGCTCAGC
* * * *
29653186 GCCCGCACGCTCGTTTCGTGGGATGACTTAT
126 GCCCGCACGCCCGGTTCATGGGATGACTTAG
* * * * *
29653217 GCATATGGAGTTCATTCTTAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGATA
1 GCATAGGGAGTTCATTC-CAGTCTAAGATCAGACTGGACTGAGGGTTGT-GCAGCAGGATCGACA
* * * *
29653282 GCACGTATGGGGGGACCAGGTCGATCCTCGGCTTGCGCAT
64 GCACGCA-GGGGGGATCAGGCCGATCCCCGGCTTGCGCAT
29653322 CCTACCTCTC
Statistics
Matches: 211, Mismatches: 43, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 44 0.21
159 162 0.77
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATAGGGAGTTCATTCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGCAGCAGGATCGACAGC
ACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATCCCTCTCTGACCAGCTCAGCGCCCG
CACGCCCGGTTCATGGGATGACTTAG
Found at i:29653424 original size:25 final size:25
Alignment explanation
Indices: 29653383--29653443 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 25
29653373 TAGGCACATA
29653383 GAGTTCATTTCATGTCTAAGCATACG
1 GAGTTCA-TTCATGTCTAAGCATACG
29653409 GAGTTCATTCATGTCTAAGCATACG
1 GAGTTCATTCATGTCTAAGCATACG
29653434 GA-TTGCATTC
1 GAGTT-CATTC
29653444 CCAGTCTAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
24 2 0.06
25 25 0.74
26 7 0.21
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (25 bp):
GAGTTCATTCATGTCTAAGCATACG
Found at i:29654153 original size:26 final size:26
Alignment explanation
Indices: 29654123--29654175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29654113 GTTGAATTAG
29654123 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29654149 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29654175 G
1 G
29654176 ATCAAAAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29654722 original size:12 final size:12
Alignment explanation
Indices: 29654705--29654741 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
29654695 TTGCGATAGT
29654705 AGGATCGACAGC
1 AGGATCGACAGC
29654717 AGGATCGACAGC
1 AGGATCGACAGC
29654729 AGGATCGACAGC
1 AGGATCGACAGC
29654741 A
1 A
29654742 CGTAGGGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.32, T:0.08
Consensus pattern (12 bp):
AGGATCGACAGC
Found at i:29654872 original size:26 final size:26
Alignment explanation
Indices: 29654833--29654883 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29654823 TTGGTTTAGG
*
29654833 CATACGGAGCTCATT-CCATGTCTAAC
1 CATACGAAGCTCATTCCCA-GTCTAAC
*
29654859 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGCTCATTCCCAGTCTAA
29654884 GATCGGACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGCTCATTCCCAGTCTAAC
Found at i:29654919 original size:208 final size:209
Alignment explanation
Indices: 29654520--29654925 Score: 494
Period size: 208 Copynumber: 1.9 Consensus size: 209
29654510 TTGAGGTAGT
* * * * *
29654520 AGGATCGACAGCACACAGGGGGGGATCGGGCCGGTCCCTGGCTTACGCGTTCAGCCTCTTCGGCT
1 AGGATCGACAGCACACAGGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCAGCCTCTCCGGCT
* * * *
29654585 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTCGACTTCGGCATACAGAGTTCATTCTATGTCTAA
66 GGCTGAGCACCCGCATGCTCGTTTCGTGGGTCGACTTAGGCATACAGAGCTCATTCCATGTCTAA
* ** * *
29654650 GCATACGGGGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGCGTTGCGATAGTAGGATCGACA
131 CCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGCGTTGCGACAGCAGGATCGACA
29654715 GCAGGATCGACAGC
196 GCAGGATCGACAGC
** * *
29654729 AGGATCGACAGCACGTA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-T
1 AGGATCGACAGCACACAGGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCAGCCTCTCCGGCT
* * * * ** *
29654792 CGGCTGTGCACCCGCGTGCTTGTTTCGTGGGTTGGTTTAGGCATACGGAGCTCATTCCATGTCTA
66 -GGCTGAGCACCCGCATGCTCGTTTCGTGGGTCGACTTAGGCATACAGAGCTCATTCCATGTCTA
* ** * * *
29654857 ACCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGGGGCAGCAGGATCGA
130 ACCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGCGTTGCGACAGCAGGATCGA
29654921 CAGCA
194 CAGCA
29654926 TGCAGGGAGG
Statistics
Matches: 164, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
207 2 0.01
208 147 0.90
209 15 0.09
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (209 bp):
AGGATCGACAGCACACAGGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCAGCCTCTCCGGCT
GGCTGAGCACCCGCATGCTCGTTTCGTGGGTCGACTTAGGCATACAGAGCTCATTCCATGTCTAA
CCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGCGTTGCGACAGCAGGATCGACA
GCAGGATCGACAGC
Found at i:29654966 original size:185 final size:187
Alignment explanation
Indices: 29654725--29655266 Score: 581
Period size: 195 Copynumber: 2.9 Consensus size: 187
29654715 GCAGGATCGA
* *
29654725 CAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* ** * * *
29654790 GTCGGCTGTGCACCCGCGTGCTTGTTTCGTGGGTTGGTTTAGGCATACGGAGCTCATTCCATGTC
66 GTCGGCTGTGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * *
29654855 TAACCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTT-G-GG-G
131 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACTAAGGGTTAGAGGAG
* * * * *
29654909 CAGCAGGATCGACAGCATGCAGGGAGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTTTTC
1 CAGCAGGATCGACAGCACGCAGGG-GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * * * * ** * *
29654974 GG-CTGGCTGAGTGTCCGTACGCTCATTTTGTGGGTCAGCTTCGGCATACAGAGTTCATTCCATG
65 GGTC-GGCTGTGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * ** *
29655038 TCTAAGCGTATGGGGTTCATT-CCAGTCTAAGATCGGACCGAATTAAGGGTTAAGACAGCAGGAC
129 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACTAAGGGTT-----AG-AGG--
29655102 CAG
186 -AG
* * * *
29655105 CAGCAGGATCGGCAGCACGCAGGGGGGACCGAGTCGATCCCCGGATTGCGTATTCTGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * *
29655170 GTCGGCTGTGCGCCCACACGCTCGTTTCGTGAGTTGGCTTGGGCACACGAAGTTCATTCCATGTC
66 GTCGGCTGTGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
29655235 TAAGCATACGAAGTTCATTCCCAGTCTAAGAT
131 TAAGCATACGAAGTTCATTCCCAGTCTAAGAT
29655267 TTTGAGCCAC
Statistics
Matches: 283, Mismatches: 59, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
184 49 0.17
185 97 0.34
190 1 0.00
192 2 0.01
195 98 0.35
196 36 0.13
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (187 bp):
CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
GTCGGCTGTGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACTAAGGGTTAGAGGAG
Found at i:29655253 original size:380 final size:386
Alignment explanation
Indices: 29654469--29655266 Score: 1006
Period size: 393 Copynumber: 2.1 Consensus size: 386
29654459 GACCTAGGCG
* * * *
29654469 TACGGAGTTCATT-CCAATCTAAGATCGAACTGGATCGAGGGTTGAGGTAGTAGGATCGACAGCA
1 TACGAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGAGGCAGCAGGATCGACAGCA
* * *
29654533 CACAGGGGGGGATCGGGCCGGTCCCTGGCTTACGCGTTCAGCCTCTTCGGCTGGCTGAGCGCCCG
66 CACAGGGAGGGATCGGGCCGGTCCCCGGCTTACGCATTCAGCCTCTTCGGCTGGCTGAGCGCCCG
* * *
29654598 CATGCTCGTTTCGTGGGTCGACTTCGGCATACAGAGTTCATTCTATGTCTAAGCATACGGGGTTC
131 CACGCTCATTTCGTGGGTCGACTTCGGCATACAGAGTTCATTCCATGTCTAAGCATACGGGGTTC
* *
29654663 ATTCCCAGTCTAAGATCAGACCAGATCGAGCGTTGCGATAGTAGGATCGACAGCAGGATCGACAG
196 ATTCCCAGTCTAAGATCAGACCAGA-C-A--GTT--GATAG-AGGATAGACAGCAGGACCGACAG
* * *
29654728 CAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC
254 CAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGATTGCGCATTCTGCCTCTCCGGTC
* ** * * * * *
29654793 GGCTGTGCACCCGCGTGCTTGTTTCGTGGGTTGGTTTAGGCATACGGAGCTCATTCCATGTCTAA
319 GGCTGTGCACCCACACGCTCGTTTCGTGAGTTGGCTTAGGCACACGAAGCTCATTCCATGTCTAA
29654858 CCA
384 CCA
* *
29654861 TACGAAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGGGGCAGCAGGATCGACAGC
1 TACGAAGTTCATTCCCAGTCTAAGATCGAACTGGATC-GAGGGTTGAGGCAGCAGGATCGACAGC
** * * * * * *
29654925 ATGCAGGGAGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTTTTCGGCTGGCTGAGTGTCC
65 ACACAGGGAGGGATCGGGCCGGTCCCCGGCTTACGCATTCAGCCTCTTCGGCTGGCTGAGCGCCC
* * * *
29654990 GTACGCTCATTTTGTGGGTC-AGCTTCGGCATACAGAGTTCATTCCATGTCTAAGCGTATGGGGT
130 GCACGCTCATTTCGTGGGTCGA-CTTCGGCATACAGAGTTCATTCCATGTCTAAGCATACGGGGT
* *
29655054 TCATT-CCAGTCTAAGATCGGACC-GA-A-TT-A-AG-GGTTAAGACAGCAGGACC-AGCAGCAG
194 TCATTCCCAGTCTAAGATCAGACCAGACAGTTGATAGAGGAT-AGACAGCAGGACCGA-CAGCAG
* * *
29655111 GATCGGCAGCACGCAGGGGGGACCGAGTCGATCCCCGGATTGCGTATTCTGCCTCTCCGGTCGGC
257 GATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGATTGCGCATTCTGCCTCTCCGGTCGGC
* * * *
29655176 TGTGCGCCCACACGCTCGTTTCGTGAGTTGGCTTGGGCACACGAAGTTCATTCCATGTCTAAGCA
322 TGTGCACCCACACGCTCGTTTCGTGAGTTGGCTTAGGCACACGAAGCTCATTCCATGTCTAACCA
29655241 TACGAAGTTCATTCCCAGTCTAAGAT
1 TACGAAGTTCATTCCCAGTCTAAGAT
29655267 TTTGAGCCAC
Statistics
Matches: 355, Mismatches: 46, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
379 4 0.01
380 155 0.44
381 2 0.01
382 1 0.00
385 2 0.01
388 1 0.00
391 2 0.01
392 31 0.09
393 157 0.44
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (386 bp):
TACGAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGAGGCAGCAGGATCGACAGCA
CACAGGGAGGGATCGGGCCGGTCCCCGGCTTACGCATTCAGCCTCTTCGGCTGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTCGACTTCGGCATACAGAGTTCATTCCATGTCTAAGCATACGGGGTTC
ATTCCCAGTCTAAGATCAGACCAGACAGTTGATAGAGGATAGACAGCAGGACCGACAGCAGGATC
GACAGCACGCAGGGGGGACCGAGCCGATCCCCGGATTGCGCATTCTGCCTCTCCGGTCGGCTGTG
CACCCACACGCTCGTTTCGTGAGTTGGCTTAGGCACACGAAGCTCATTCCATGTCTAACCA
Found at i:29655940 original size:26 final size:26
Alignment explanation
Indices: 29655902--29655955 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
29655892 GGGTTGACTT
29655902 AGCATATAGAGTTCATCCCCAGTCTA
1 AGCATATAGAGTTCATCCCCAGTCTA
* *
29655928 AGCATAT-GAAGTTCATTCCCAGTTTA
1 AGCATATAG-AGTTCATCCCCAGTCTA
29655954 AG
1 AG
29655956 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (26 bp):
AGCATATAGAGTTCATCCCCAGTCTA
Found at i:29656148 original size:149 final size:148
Alignment explanation
Indices: 29655879--29656150 Score: 381
Period size: 149 Copynumber: 1.8 Consensus size: 148
29655869 GAGCGTCCGC
* * *
29655879 ACGCTCGTTTCGTGGGTTGACTTAGCATATAGAGTTCATCCCCAGTCTAAGCATATGAAGTTCAT
1 ACGCTCATTTCGTGGGTTGACTTAGCATATAGAGTTAATCCCCAGTCTAAGCATAAGAAGTTCAT
* * * * *
29655944 TCCCAGTTTAAGATCGGACTGGACTGATGGTTGCGACAGTAGGATCGACAGCACGCAGAAGGGAC
66 TCCCAGTCTAAGATCGAACTGGACTGAGGGTTACGACAGTAGGATCGACAACACGCAGAAGGGAC
29656009 CGGATCGGTCCCCGACAT
131 CGGATCGGTCCCCGACAT
29656027 ACGCTCATTTCGTGGGTTGACTTAGGCATAT-GAAGTTAATCCCCAGTCTAAGCATACAG-AGTT
1 ACGCTCATTTCGTGGGTTGACTTA-GCATATAG-AGTTAATCCCCAGTCTAAGCATA-AGAAGTT
**
29656090 CATTCCCAGTCTAAGATCGAA-TCGGA-TCGAGGGTTACGACAGTAGGATCGGTAACACGCAG
63 CATTCCCAGTCTAAGATCGAACT-GGACT-GAGGGTTACGACAGTAGGATCGACAACACGCAG
29656151 GGGGGATCAG
Statistics
Matches: 109, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
148 26 0.24
149 82 0.75
150 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (148 bp):
ACGCTCATTTCGTGGGTTGACTTAGCATATAGAGTTAATCCCCAGTCTAAGCATAAGAAGTTCAT
TCCCAGTCTAAGATCGAACTGGACTGAGGGTTACGACAGTAGGATCGACAACACGCAGAAGGGAC
CGGATCGGTCCCCGACAT
Found at i:29656530 original size:158 final size:158
Alignment explanation
Indices: 29656078--29656578 Score: 524
Period size: 158 Copynumber: 3.2 Consensus size: 158
29656068 CCCAGTCTAA
* * *
29656078 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGA-TCGAGGGTTACGACAGTAGGATCGGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACT-GAGGGTTGCGGCAGTAGGATCGGC
* * * * * * *
29656142 AACACGCAGGGGGGATCAGGCTGATCCTCGGCTTGCACAGTCTGCCTCTCCGGCCGGCTGAGTGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGC
* * * * *
29656207 CCGCACACCCATTTCATGTGTTGGCTTAG
130 CTGCACGCTCATTTCGTGGGTTGGCTTAG
** * ** ** * * ** *
29656236 GCATAGGGAGGTCATTCCTTGTCTAAGCCCCATTCGGACCAAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * * * *
29656301 GCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTG-C
*
29656366 CT-CACGCTCATTTCGTGGGTTGACTTAG
130 CTGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
29656394 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * * ** *
29656459 GCACGCAGGGGGGACCGGGCCGGTCCCCGACTTGCGTATTCTGCCTCTCCGATCGGTTGAGTGCC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
*
29656524 TGCACGCTCGTTTCGTGGGTTGGCTTAG
131 TGCACGCTCATTTCGTGGGTTGGCTTAG
29656552 GCATACTA-AGTTCATT-CCATGTCTAAG
1 GCATAC-AGAGTTCATTCCCA-GTCTAAG
29656579 TATACGAACT
Statistics
Matches: 274, Mismatches: 64, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
157 6 0.02
158 265 0.97
159 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGGCAGTAGGATCGGCA
GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
TGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:29656998 original size:16 final size:15
Alignment explanation
Indices: 29656973--29657006 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
29656963 GCCTAACCGA
*
29656973 CGGCATTGGGGGTTC
1 CGGCATTGGGGGGTC
29656988 CGGCGATTGGGGGGTC
1 CGGC-ATTGGGGGGTC
29657004 CGG
1 CGG
29657007 GGGGTGTGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.06, C:0.21, G:0.53, T:0.21
Consensus pattern (15 bp):
CGGCATTGGGGGGTC
Found at i:29657054 original size:277 final size:276
Alignment explanation
Indices: 29656560--29657108 Score: 900
Period size: 277 Copynumber: 2.0 Consensus size: 276
29656550 AGGCATACTA
* *
29656560 AGTTCATTCCATGTCTAAGTATACGAACTTCATTCCAAGTCTAAGAGTTTGAGCCACGGTGCACG
1 AGTTCATTCCATGTCTAAGCAGACGAACTTCATTCCAAGTCTAAGAGTTTGAGCCACGGTGCACG
* *
29656625 TGCTGGGCTCGGGCATGTGCTAGTGTCGCATTTTTTTCACCTGGGGCACCATCGTCGAAGAGCCT
66 TGCTGGGCTCGAGCATGTGCTAGTGTCACATTTTTTTCACCTGGGGCACCATCGTCGAAGAGCCT
* * * **
29656690 AATCGACGGCATTGGGGATTCCGGTGATTGGGGGGTCCGAGGGGTATGCGCAGATGATGTGTGAT
131 AACCGACGGCATTGGGGATTCCGGCGATTGGGGGGTCCGAGGGGTATGCGCACATGATGTGCAAT
29656755 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
29656820 TCTTAAAGAGCATATGG
261 -CTTAAAGAGCATATGG
* * * *
29656837 AGTTCATTCCATGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCATG
1 AGTTCATTCCATGTCTAAGCAGACGAACTTCATTCCAAGTCTAAGAGTTTGAGCCACGGTGCACG
* ** * *
29656902 TGCTGGGCTCGAGCGTGTGCTAGTGTCACATTTTTTTTGCCTGGGGTACCATCGTCGGAGAGCCT
66 TGCTGGGCTCGAGCATGTGCTAGTGTCACATTTTTTTCACCTGGGGCACCATCGTCGAAGAGCCT
* * *
29656967 AACCGACGGCATTGGGGGTTCCGGCGATTGGGGGGTCCGGGGGGTGTGCGCACATGATGTGCAAT
131 AACCGACGGCATTGGGGATTCCGGCGATTGGGGGGTCCGAGGGGTATGCGCACATGATGTGCAAT
29657032 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
29657097 CTTAAAGAGCAT
261 CTTAAAGAGCAT
29657109 TTGAGATTTT
Statistics
Matches: 251, Mismatches: 21, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
276 12 0.05
277 239 0.95
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (276 bp):
AGTTCATTCCATGTCTAAGCAGACGAACTTCATTCCAAGTCTAAGAGTTTGAGCCACGGTGCACG
TGCTGGGCTCGAGCATGTGCTAGTGTCACATTTTTTTCACCTGGGGCACCATCGTCGAAGAGCCT
AACCGACGGCATTGGGGATTCCGGCGATTGGGGGGTCCGAGGGGTATGCGCACATGATGTGCAAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CTTAAAGAGCATATGG
Found at i:29658147 original size:316 final size:317
Alignment explanation
Indices: 29657566--29658225 Score: 744
Period size: 316 Copynumber: 2.1 Consensus size: 317
29657556 CCCAGTCTAA
* **
29657566 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGTGGGATCAACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCGACAGCAGGATCAACA
* * *
29657631 GCATGCAAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGGCTCTCCAGCCGGCTGAGCGCC
66 GCACGCAAGGGGGACTGGGCTGATCCCCAGCTTGCGCATTCTAGCTCTCCAGCCGGCTGAGCGCC
* * * *
29657696 TGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATTTCGAAGCCCCAGCCGA
131 CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCGAAGCCCCAGCCGA
* * *
29657761 ACCGAGGGTTGTGGCAGCGAGACCGATAGCATGCAGAGGGGAATCGTATCGATCCTCGGCTTGCG
196 ACCGAGGGTTATGGCAGCGAGACCGATAGCACGCAGAGGGGAATCGGATCGATCCTCGGCTTGCG
* * *
29657826 CATTATGCCTCCCCGACCTGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
261 CATTATGCCTCCCCGACCGGCTCAGCACCCGCACGCTCGTTACGTGGGTTGACTTAG
* * ** **
29657883 GCGTATGGAGTTCATTCCCAGTCTAAGATCGGACC-GAATCAAGTGTTGCGGTAGCAGGATCGCC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ATCAAGGGTTGCGACAGCAGGATCAAC
* * * * * * *
29657947 GGCACGC-AGGAGGGACTGGG-TCGCTCCCCAGCTTGCGCATTCTATCTTTTC-GATCGGTTGAG
65 AGCACGCAAGG-GGGACTGGGCT-GATCCCCAGCTTGCGCATTCTAGCTCTCCAG-CCGGCTGAG
** * * ***
29658009 CGCCCGC-CGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTCTGCCCCAG
127 CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCGAAGCCCCAG
* ** * *
29658073 CCGGACCGAGGGTTATGGCAGC-AGGATTGGTAGCACGCAGAAGGGG-ATCGG-GCTGATCCTCG
192 CCGAACCGAGGGTTATGGCAGCGA-GACCGATAGCACGCAG-AGGGGAATCGGATC-GATCCTCG
* ** ** *
29658135 GCTTGTGCATTATGCCTTTCCGGTCGGCTGAGCACCCGCACGCTCGTTACGTGGGTTGACTTAG
254 GCTTGCGCATTATGCCTCCCCGACCGGCTCAGCACCCGCACGCTCGTTACGTGGGTTGACTTAG
* *
29658199 TCATACGGAGTTCA-TCCCTAGTCTAAG
1 GCATATGGAGTTCATTCCC-AGTCTAAG
29658226 CATATGGAGT
Statistics
Matches: 285, Mismatches: 50, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
315 6 0.02
316 171 0.60
317 108 0.38
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (317 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCGACAGCAGGATCAACA
GCACGCAAGGGGGACTGGGCTGATCCCCAGCTTGCGCATTCTAGCTCTCCAGCCGGCTGAGCGCC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCGAAGCCCCAGCCGA
ACCGAGGGTTATGGCAGCGAGACCGATAGCACGCAGAGGGGAATCGGATCGATCCTCGGCTTGCG
CATTATGCCTCCCCGACCGGCTCAGCACCCGCACGCTCGTTACGTGGGTTGACTTAG
Found at i:29658597 original size:26 final size:26
Alignment explanation
Indices: 29658566--29658619 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
29658556 GGTTGACTTC
29658566 AGCATACAGAGTTCATCCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
* *
29658592 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
29658618 AG
1 AG
29658620 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
AGCATACAGAGTTCATCCCCAGTCTA
Found at i:29658821 original size:26 final size:26
Alignment explanation
Indices: 29658785--29658837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29658775 GTTGACTTTG
29658785 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
29658811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29658837 G
1 G
29658838 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29658881 original size:218 final size:218
Alignment explanation
Indices: 29658491--29658927 Score: 649
Period size: 218 Copynumber: 2.0 Consensus size: 218
29658481 TGATCCCTGG
* ** * * * ** * *
29658491 CTTGTGCATTATGCCTCTCCGGTCGGCCTCTCCAGTCGGCTGAGTGCCCGCATGCTCGTTTCATG
1 CTTGTACATTATGCCTCTCCGACCGACCTCTCCAATAGGCTGAACGCCCACACGCTCGTTTCATG
29658556 GGTTGACTTCAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
66 GGTTGACTTCAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
29658621 TCGAATCGGACTGAAGGTTACGACAGCAGGATTGGCAGCACCCAATGGGACCAGATCGATCCCCG
131 TCGAATCGGACTGAAGGTTACGACAGCAGGATCGGCAGCACCCAAGGGGACCAGACCGATCCCCG
**
29658686 GCTTGCGCATTCTGTCTCTCCGA
196 GCTTGCGCATTCTACCTCTCCGA
* *
29658709 CTTGTACATTATGCCTCTCCGACCGACCTTTCCAATAGGCTGAACGCCCACACGCTCGTTTCGTG
1 CTTGTACATTATGCCTCTCCGACCGACCTCTCCAATAGGCTGAACGCCCACACGCTCGTTTCATG
** *
29658774 GGTTGACTTTGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
66 GGTTGACTTCAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * **
29658839 TCGAATCGGATTGAAGGTTACGGCAGCAGGATCGGTAGCACCCAAGGGGACTGGACCGATCCCCG
131 TCGAATCGGACTGAAGGTTACGACAGCAGGATCGGCAGCACCCAAGGGGACCAGACCGATCCCCG
29658904 GCTTGCGCATTCTACCTCTCCGA
196 GCTTGCGCATTCTACCTCTCCGA
29658927 C
1 C
29658928 CGGTTGAGCG
Statistics
Matches: 194, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
218 194 1.00
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25
Consensus pattern (218 bp):
CTTGTACATTATGCCTCTCCGACCGACCTCTCCAATAGGCTGAACGCCCACACGCTCGTTTCATG
GGTTGACTTCAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGAATCGGACTGAAGGTTACGACAGCAGGATCGGCAGCACCCAAGGGGACCAGACCGATCCCCG
GCTTGCGCATTCTACCTCTCCGA
Found at i:29659328 original size:26 final size:25
Alignment explanation
Indices: 29659298--29659349 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
29659288 GTTGACTTAG
29659298 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCAT-CCCAGTCTAA
* * *
29659324 GCATACGGAGTTTATTCCAGTCTAA
1 GCATACGAAGTTCATCCCAGTCTAA
29659349 G
1 G
29659350 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:29659502 original size:21 final size:21
Alignment explanation
Indices: 29659478--29659526 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
29659468 TTGTGGCAAT
*
29659478 GGGACCGACAGCATGCAGAGG
1 GGGACCGACAGCACGCAGAGG
*
29659499 GGGACCGACAGCACGTAGAGG
1 GGGACCGACAGCACGCAGAGG
29659520 GGGACCG
1 GGGACCG
29659527 GGCCGATCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.45, T:0.04
Consensus pattern (21 bp):
GGGACCGACAGCACGCAGAGG
Found at i:29660868 original size:26 final size:26
Alignment explanation
Indices: 29660832--29660884 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29660822 GTTGACTTAG
*
29660832 GCATACGGAGTTCAT-CCGCAGTCTAA
1 GCATACAGAGTTCATACC-CAGTCTAA
29660858 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
29660884 G
1 G
29660885 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:29661099 original size:184 final size:184
Alignment explanation
Indices: 29660761--29661227 Score: 498
Period size: 184 Copynumber: 2.5 Consensus size: 184
29660751 CCACCCGTTT
* * * * **
29660761 GATCCGCGGCTTGCGCATCCAACCTCTCTAGTCGGCTGAGCGT--CGCACGCTCGTTTTGTGGGT
1 GATCCCCGACTTGCGCATTCTACCTCTCTAGTCGGCTGAGC-TCCCGCACGCTCGTTTCATGGGT
* * *
29660824 TGACTTAGGCATACGGAGTTCATCCGCAGTCTAAGCATACAGAGTTCATACCCAGTCTAAGATCA
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATACCCAATCCAAGATCA
* *** * *
29660889 GACTGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACC-AGGCC
130 GACTGGACCAAGGGTTGCAACAGTAGGATCAACAGCACGCAGGAGGGACCGA-GCC
* * *
29660944 GATCCCCGACTTGTGCATTCTACCTCTCTGGTCGGCTGAGCTCCCGCACGCTCGTTTCATGGGCT
1 GATCCCCGACTTGCGCATTCTACCTCTCTAGTCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTT
* * * *
29661009 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTA-TCAATCCAAGATCG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA-TACCCAATCCAAGATCA
* * *
29661073 GA-TCGGACCAAGTGTTGCAACAGTAGGATCAACAGCATGCAGGAGGGACCGAGTC
130 GACT-GGACCAAGGGTTGCAACAGTAGGATCAACAGCACGCAGGAGGGACCGAGCC
* * * * * * * * *
29661128 GATCCCCGGCTTGCGCATTCTGCCTCTCCA-ACTGGCTGAGCACCCACACGCCCGTTGCATGAGT
1 GATCCCCGACTTGCGCATTCTACCTCTCTAGTC-GGCTGAGCTCCCGCACGCTCGTTTCATGGGT
* * *
29661192 TGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
65 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
29661228 CCCAGCCGGA
Statistics
Matches: 237, Mismatches: 40, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
182 1 0.00
183 40 0.17
184 193 0.81
185 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
GATCCCCGACTTGCGCATTCTACCTCTCTAGTCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATACCCAATCCAAGATCAG
ACTGGACCAAGGGTTGCAACAGTAGGATCAACAGCACGCAGGAGGGACCGAGCC
Found at i:29661522 original size:158 final size:157
Alignment explanation
Indices: 29661337--29661993 Score: 478
Period size: 158 Copynumber: 4.3 Consensus size: 157
29661327 CGCCTGAATG
* * *
29661337 CTCGTGTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGAATCGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGAATCGAG
* * * * * * *
29661402 GGTTGTGGCAGCAGGATCGATAGCACACAGGCGGGACCGGGTCGGTCCTTGGCTTGCGCATTTTA
66 GGTTGCGACAGCAGGATCGACAGCACACAGG-GGGACCGGGCCGATCCCTGGCTTGCGCATTCTA
* * *
29661467 CCTCTTTGGCCGGCTGAGCACCTGTACA
130 CCTCTTCGACCGGCTGAGCACCCGTACA
* * * *
29661495 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CTGA
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGAATC-GA
* * * * * ** * *
29661559 GGGTTACGACAACAGGATCGATAGCACGCAGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTG
65 GGGTTGCGACAGCAGGATCGACAGCACACAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTA
* * * **
29661624 CCTCTCCGACTGACTGAGTGCCCGTA-A
130 CCTCTTCGACCGGCTGAGCACCCGTACA
* * * **
29661651 GCCCGTTTCGTGGGTTGGC-TAGGCATA-GGCAGTTCATT-CCATATCTATGCCCCAG-TCGAAT
1 -CTCGTTTCGTGGGTTGACTTAGGCATACGG-AGTTCATTCCCA-ATCTAAG-ATCAGATCGAAT
* ** * * * *
29661712 CGAGGGTTGTGGGAG-TGAGACCGGCAGCACACAGAAGGGGACCGGGTCGAT-CC---C-T--GC
62 CGAGGGTTGCGACAGCAG-GATCGACAGCACACAG--GGGGACCGGGCCGATCCCTGGCTTGCGC
* ** * * *
29661769 ---CT--CTC--CGACCGGCTCAGTGCCTGAACG
124 ATTCTACCTCTTCGACCGGCTGAGCACCCGTACA
* * * *
29661796 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGAACGGATC-AGACCGA
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGA-ATCGA
* * *
29661860 GGGTTGCGACAGCAGGATCGACAGCACCCAGGGAGGACTGGGCC-AGTCCCTGGCTTGCACATTC
65 GGGTTGCGACAGCAGGATCGACAGCACACAGGG-GGACCGGGCCGA-TCCCTGGCTTGCGCATTC
* * * * *
29661924 TACCTCTTTGGCAGGCTGAGCACCCGCACG
128 TACCTCTTCGACCGGCTGAGCACCCGTACA
* *
29661954 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
29661994 ATGTCTAAGC
Statistics
Matches: 382, Mismatches: 85, Indels: 64
0.72 0.16 0.12
Matches are distributed among these distances:
143 3 0.01
144 43 0.11
145 52 0.14
146 8 0.02
148 3 0.01
149 1 0.00
151 3 0.01
153 1 0.00
154 3 0.01
155 5 0.01
156 50 0.13
157 64 0.17
158 146 0.38
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGAATCGAG
GGTTGCGACAGCAGGATCGACAGCACACAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTAC
CTCTTCGACCGGCTGAGCACCCGTACA
Found at i:29662099 original size:93 final size:93
Alignment explanation
Indices: 29661940--29662114 Score: 271
Period size: 93 Copynumber: 1.9 Consensus size: 93
29661930 TTTGGCAGGC
* * *
29661940 TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
*
29662005 TATGGAGTTCATTCCCAATTCGAACGGT
66 TATGGAGCTCATTCCCAATTCGAACGGT
* * *
29662033 TGAGCGCCCACACGCTTGTTTCATGGGTTGACTTAGGTATACGGAGTTCATCCCCA-GTCTAAGC
1 TGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGC
29662097 ATATGGAGCTCATTCCCA
65 ATATGGAGCTCATTCCCA
29662115 GTCTAAGATC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
93 71 0.96
94 3 0.04
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.29
Consensus pattern (93 bp):
TGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
TATGGAGCTCATTCCCAATTCGAACGGT
Found at i:29663464 original size:159 final size:156
Alignment explanation
Indices: 29663286--29663663 Score: 386
Period size: 157 Copynumber: 2.4 Consensus size: 156
29663276 TGGCCGACTG
* * *
29663286 AGCACCTGCATGCCTGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGACCC
1 AGCACCCGCATGCC-GTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCC
** * * ** * *
29663351 AG-TTGGACCAAGGGTTGTGGCTGCGAGACTGACAGCACGTAGAGGGGGATCAAGCC-GATCCCC
64 AGACCGGA-CAAGGGTTGCGACAACAAGACCGACAGCACGTAGA-GGGGATCAAGCCAG-TCCCC
* *
29663414 AGCTTGTGCATTATGCCTCTCCGGCCAGCTC
126 AGCTTATGCATTATGCCTCTCCGACCAGCTC
* * * **
29663445 AGCACCCGCATGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTGATGCCCA-GTCTAAGGTC
1 AGCACCCGCATGC-CGTTTCATGGGTTAGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCCC
* * *
29663509 AGACCGGACGAGGGTTGCGACAACAAGACCGACAGCACGTAGAGGGGATCAGGCCAGTCCCCGGC
64 AGACCGGACAAGGGTTGCGACAACAAGACCGACAGCACGTAGAGGGGATCAAGCCAGTCCCCAGC
* * *
29663574 TTATGCATTCTGCCTCTCCGACCGGCTG
129 TTATGCATTATGCCTCTCCGACCAGCTC
** * * *
29663602 AGCACTCATACA-CCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCAC-C-CGCATGCCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
29663664 ATATGGAGTT
Statistics
Matches: 179, Mismatches: 33, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.02
157 84 0.47
158 34 0.19
159 54 0.30
160 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (156 bp):
AGCACCCGCATGCCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAG
ACCGGACAAGGGTTGCGACAACAAGACCGACAGCACGTAGAGGGGATCAAGCCAGTCCCCAGCTT
ATGCATTATGCCTCTCCGACCAGCTC
Found at i:29663666 original size:26 final size:26
Alignment explanation
Indices: 29663636--29663688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29663626 GTTGGCTTAG
29663636 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
29663662 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29663688 G
1 G
29663689 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29664033 original size:26 final size:26
Alignment explanation
Indices: 29664003--29664053 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29663993 GTTCACTTAG
29664003 GCATACAG-AGTTCATCCCCAGTCTAT
1 GCATA-AGAAGTTCATCCCCAGTCTAT
* *
29664029 GCATATGAAGTTCATTCCCAGTCTA
1 GCATAAGAAGTTCATCCCCAGTCTA
29664054 AGATCGGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAT
Found at i:29664302 original size:357 final size:359
Alignment explanation
Indices: 29663618--29664269 Score: 795
Period size: 357 Copynumber: 1.8 Consensus size: 359
29663608 CATACACCCA
** * * *
29663618 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTCACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATATGAAGTTCATTCCCAG
29663683 TCTAAGATCAGATCGGACCAAAGGTTACGGTAGCAGGACTAGCAGCAGGATCGACAGACGCAGGG
66 TCTAAGATCAGATCGGACCAAAGGTTA--GT---A-GACTAGCA-CAGGATCGACAGACGCAGGG
* * * * * * * *
29663748 GGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGGACGCTCG
124 GGGATAGGCTCGATCCCAGACTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCG
* * *
29663813 TTCCGTAGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGATTGAGGGTT
189 TTCCGTAGGTTAGCTTAGGCATACGAAGTTCATACCATGTCTAAGCCCCAACCAGACTGAGGGTT
* * * * *
29663878 ATGGCAGTAGGACCGACAGCACGTAGATGGGGATCGGGCTGATCCCCAATTCACTTATTATGCCT
254 ATGGCAGGAGGACCGACAGCACGCAGAGGGGGACCGGGCTGACCCCCAATTCAC-TATTATGCCT
29663943 CTCTGACCAGCATCTTCGATCGACTTAGCCCCCGCACACTTG
318 CTCTGACCAGCATCTTCGATCGACTTAGCCCCCGCACACTTG
*
29663985 TTTCATGGGTTCACTTAGGCATACAGAGTTCATCCCCA-GTCTATGCATATGAAGTTCATTCCCA
1 TTTCATGGGTTCACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCATATGAAGTTCATTCCCA
* * * * *
29664049 GTCTAAGATCGGATCGGACCGAGGGTT-GT-GA-TAGCA-A-GATCGATAGCACGCTGGGGTGGA
65 GTCTAAGATCAGATCGGACCAAAGGTTAGTAGACTAGCACAGGATCGACAG-ACGCAGGGG-GGA
29664109 TAAGGCT-GATCCCTAG-CTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACG-TCTGT
128 T-AGGCTCGATCCC-AGACTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTC-GT
* * * * *
29664171 TTCGTGGGTTAGCTTAGGCATAGGGAGTTCATACCATGTCTAAGCCCCAGCC-GAACTGAGGGTT
190 TCCGTAGGTTAGCTTAGGCATACGAAGTTCATACCATGTCTAAGCCCCAACCAG-ACTGAGGGTT
29664235 ATGGCAGCGA-GACCGACAGCACGCAGAGGGGGACC
254 ATGGCAG-GAGGACCGACAGCACGCAGAGGGGGACC
29664270 AGGTCGACCC
Statistics
Matches: 246, Mismatches: 31, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
355 8 0.03
356 12 0.05
357 131 0.53
358 10 0.04
359 2 0.01
364 2 0.01
367 78 0.32
368 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (359 bp):
TTTCATGGGTTCACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATATGAAGTTCATTCCCAG
TCTAAGATCAGATCGGACCAAAGGTTAGTAGACTAGCACAGGATCGACAGACGCAGGGGGGATAG
GCTCGATCCCAGACTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTCCGTA
GGTTAGCTTAGGCATACGAAGTTCATACCATGTCTAAGCCCCAACCAGACTGAGGGTTATGGCAG
GAGGACCGACAGCACGCAGAGGGGGACCGGGCTGACCCCCAATTCACTATTATGCCTCTCTGACC
AGCATCTTCGATCGACTTAGCCCCCGCACACTTG
Found at i:29664346 original size:159 final size:158
Alignment explanation
Indices: 29664169--29664519 Score: 361
Period size: 159 Copynumber: 2.2 Consensus size: 158
29664159 CCGCACGTCT
* * * * * *
29664169 GTTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATACC-ATGTCTAAGCCCCAGCCGAA-CTGAG
1 GTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATACCTA-GTCTAAGACCCAACCAAACCCGAG
* * *
29664231 GGTTATGGCAGCGA-GACCGACAGCACGCAGAGGGGGACCAGGTCGACCCCCGGCTTGCGCATTA
64 GGTTACGACAG-GAGGACCGACAGCACGCAGA-GGGGACCAGGTCGACCCCCGACTTGCGCATTA
*
29664295 TGCCTCTCCGGTCGGCTCAGCGCCC-AAACACCC
127 TGCCTCT-CGGTAGGCTCAGCGCCCGAAA-ACCC
* * * *
29664328 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTTTAAGATCGAACCAAACCCGAGGG
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATACCTAGTCTAAGACCCAACCAAACCCGAGGG
* * * ** * * *
29664393 TTGCGACAGTAGGATCGACAGCACGCAGAGGGGACTGGGTCGATCCCTGACTTGCGCATTTTGCC
66 TTACGACAGGAGGACCGACAGCACGCAGAGGGGACCAGGTCGACCCCCGACTTGCGCATTATGCC
* * * *
29664458 TCTCGGTAGGCTGAGTGCCCGAAAGCTC
131 TCTCGGTAGGCTCAGCGCCCGAAAACCC
* *
29664486 GTTTCATGGGTTGGCTTAGGCATACGAAGTTCAT
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
29664520 TCTGTGTCTA
Statistics
Matches: 159, Mismatches: 28, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
158 48 0.30
159 81 0.51
160 30 0.19
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATACCTAGTCTAAGACCCAACCAAACCCGAGGG
TTACGACAGGAGGACCGACAGCACGCAGAGGGGACCAGGTCGACCCCCGACTTGCGCATTATGCC
TCTCGGTAGGCTCAGCGCCCGAAAACCC
Found at i:29664750 original size:26 final size:26
Alignment explanation
Indices: 29664714--29664766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29664704 GTTGACTTAG
29664714 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
29664740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
29664766 G
1 G
29664767 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:29665256 original size:26 final size:25
Alignment explanation
Indices: 29665226--29665277 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
29665216 GTTGACTTAG
29665226 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
* * *
29665252 GCATATGGAGTTTATTCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
29665277 G
1 G
29665278 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:29665430 original size:21 final size:21
Alignment explanation
Indices: 29665406--29665454 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
29665396 TTGTGGCAAC
* *
29665406 GGGACCGATAGCATGCAGAGG
1 GGGACCGACAGCACGCAGAGG
*
29665427 GGGACCGACAGCACGTAGAGG
1 GGGACCGACAGCACGCAGAGG
*
29665448 GTGACCG
1 GGGACCG
29665455 GGCCGATCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.43, T:0.08
Consensus pattern (21 bp):
GGGACCGACAGCACGCAGAGG
Found at i:29666089 original size:26 final size:26
Alignment explanation
Indices: 29666039--29666091 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29666029 GTTGGCTGAG
*
29666039 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
29666065 GCATACGGAGTTCATTCTCA-ATCTAA
1 GCATACAGAGTTCATTC-CATATCTAA
29666091 G
1 G
29666092 AGTAAGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:29666797 original size:26 final size:26
Alignment explanation
Indices: 29666761--29666812 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29666751 GTTGACTTAG
*
29666761 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
29666787 GCATACGGAGTTTATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
29666813 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:29667286 original size:159 final size:158
Alignment explanation
Indices: 29666924--29667900 Score: 654
Period size: 159 Copynumber: 6.2 Consensus size: 158
29666914 CCCAGTCTAA
* * ** * * * *
29666924 GCATATGGAGTTTATTATCAGTCTAAGATCAGA-CTGGATTGAGTGTTGCGGCAGTAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACTGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * *
29666988 AGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACTGGCTGAGTAC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGGCTGAGCAC
* * *
29667053 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGAACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * *
29667082 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGTGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGTAGGATC-G
* * * * * *
29667144 GCAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTATGCAATATGGCTCTCCAGCCGGCTCAA
63 ACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGGCTGAG
* * * *
29667209 CGCCCGAATGCTCGTGTCGTGGGTTGACTTTG
127 CACCCGAACGCTCGTTTCGTGGGTTGACTTAG
* *
29667241 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
* * ** * * * **
29667306 GCACGCAGGAGGGA-CTAGGCCGATCCTTGGCTTGTGTATTTTACCTCTCTGGCCGGCTGAGCAC
66 GCACGCAGGGGGGACCGA-GCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGGCTGAGCAC
* *
29667370 CTGTACGCTCGTTTCGTGGGTTGACTTAG
130 CCGAACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * *
29667399 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGCGGCAACAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
* * * ** * * *
29667464 GCACGCA-GGGGGACTGGGCCGATCCCCAGCTTGCACATTTTGCCTCTCC-GACCGACTGAGCGC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAG-CCGGCTGAGCAC
* * *
29667527 CCGTAA-GCCCGTTTCATGGGTTGGCTTAG
130 CCG-AACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * * *
29667556 GCATA-GGTAGTTCATT-CCATATCTATGCCCCAG-CCGAACCGAGGGTTGTGGCAG-CGAGACC
1 GCATACGG-AGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGTAG-GATC
* * * * ** * ** * * *
29667617 GACAGCACACAGAAGGGGACTGGGTTGATCCCTGGCTTACGCATTTTGCCTCT-CTGACCGGCTC
62 GACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAG-CCGGCTG
** * * *
29667681 AGTGCCTGAACGCTCGTTTTGTTGGTTGACTTAG
125 AGCACCCGAACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * ** * *
29667715 GCAGACGGAGTTCATTCCTAATCTAAGAACGGACCGGACAGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
* ** * * *** *
29667780 GCACGCAAGGGGGGACC-AGGCC-AGTCCCCGACTTGCACATTCTACCTCTTTGGCAGGCTGAGC
66 GCACGC-AGGGGGGACCGA-GCCGA-TCCCCGGCTTGTGCATTATGCCTCTCCAGCCGGCTGAGC
* *
29667843 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 ACCCGAACGCTCGTTTCGTGGGTTGACTTAG
29667874 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
29667901 CATATGGAGT
Statistics
Matches: 633, Mismatches: 157, Indels: 57
0.75 0.19 0.07
Matches are distributed among these distances:
156 7 0.01
157 112 0.18
158 190 0.30
159 312 0.49
160 12 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGGCTGAGCACC
CGAACGCTCGTTTCGTGGGTTGACTTAG
Found at i:29667710 original size:474 final size:476
Alignment explanation
Indices: 29666988--29667891 Score: 1143
Period size: 474 Copynumber: 1.9 Consensus size: 476
29666978 TAGGATCAAC
* * ** * * *
29666988 AGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACTGGCTGAGTAC
1 AGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCAACCGACTGAGCAC
* * *
29667053 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
66 CCGCAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCA
* * * * * * * * *
29667118 GACTGAGGGTTGTGGTAGTGGGACTGGCAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTAT
131 GACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAAGGGGACCGAGCCGATCCCCGGCTTAC
* * * *
29667183 GCAATATGGCTCTCCAGCCGGCTCAACGCCCGAATGCTCGTGTCGTGGGTTGACTTTGGCATACG
196 GCAATATGCCTCTCCAGCCGGCTCAACGCCCGAACGCTCGTGTCGTGGGTTGACTTAGGCAGACG
* * * ** ** *
29667248 GAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGTGGCAGCAGGATCGACAGCACGC-
261 GAGTTCATTCCCAATCTAAGAACAGACCGGACAGAGGGTTACGACAGCAGGATCGACAGCACGCA
* ** * *** * * * *
29667312 AGGAGGGACTAGGCC-GATCCTTGGCTTGTGTATTTTACCTCTCTGGCCGGCTGAGCACCTGTAC
326 AGGAGGGACCAGGCCAG-TCCCCGACTTGCACATTCTACCTCTCTGGCAGGCTGAGCACCCGCAC
29667376 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGA
390 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGA
29667441 GGGTTGCGGCAACAGGATTGAT
455 GGGTTGCGGCAACAGGATTGAT
* * *
29667463 AGCACGCA-GGGGGACTGGGCCGATCCCCAGCTTGCACATTTTGCCTCTCCGACCGACTGAGCGC
1 AGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCAACCGACTGAGCAC
* * *
29667527 CCGTAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATATCTATGCCCCAGCC-
66 CCGCAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCA
* * ** *
29667591 GAACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAAGGGGACTGGGTTGATCCCTGGCTTA
131 G-ACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAAGGGGACCGAGCCGATCCCCGGCTTA
* * * ** * * * *
29667656 CGCATTTTGCCTCT-CTGACCGGCTCAGTGCCTGAACGCTCGTTTTGTTGGTTGACTTAGGCAGA
195 CGCAATATGCCTCTCCAG-CCGGCTCAACGCCCGAACGCTCGTGTCGTGGGTTGACTTAGGCAGA
* *
29667720 CGGAGTTCATTCCTAATCTAAGAACGGACCGGACAGAGGGTTACGACAGCAGGATCGACAGCACG
259 CGGAGTTCATTCCCAATCTAAGAACAGACCGGACAGAGGGTTACGACAGCAGGATCGACAGCACG
* *
29667785 CAAGGGGGGACCAGGCCAGTCCCCGACTTGCACATTCTACCTCTTTGGCAGGCTGAGCACCCGCA
324 CAAGGAGGGACCAGGCCAGTCCCCGACTTGCACATTCTACCTCTCTGGCAGGCTGAGCACCCGCA
*
29667850 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
389 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
29667892 ATGTCTAAGC
Statistics
Matches: 358, Mismatches: 67, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
473 3 0.01
474 257 0.72
475 97 0.27
476 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (476 bp):
AGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCAACCGACTGAGCAC
CCGCAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCA
GACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAAGGGGACCGAGCCGATCCCCGGCTTAC
GCAATATGCCTCTCCAGCCGGCTCAACGCCCGAACGCTCGTGTCGTGGGTTGACTTAGGCAGACG
GAGTTCATTCCCAATCTAAGAACAGACCGGACAGAGGGTTACGACAGCAGGATCGACAGCACGCA
AGGAGGGACCAGGCCAGTCCCCGACTTGCACATTCTACCTCTCTGGCAGGCTGAGCACCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAG
GGTTGCGGCAACAGGATTGAT
Found at i:29667994 original size:93 final size:93
Alignment explanation
Indices: 29667835--29668015 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
29667825 CTCTTTGGCA
* *
29667835 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
*
29667900 GCATATGGAGTTCATTCCCAATCCGACC
66 GCATATGGAGCTCATTCCCAATCCGACC
* * *
29667928 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCA-GTCTA
1 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTA
29667992 AGCATATGGAGCTCATTCCCAATC
65 AGCATATGGAGCTCATTCCCAATC
29668016 TAAGATCGAA
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
93 78 0.96
94 3 0.04
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.27
Consensus pattern (93 bp):
GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
GCATATGGAGCTCATTCCCAATCCGACC
Found at i:29669547 original size:158 final size:157
Alignment explanation
Indices: 29669048--29669547 Score: 500
Period size: 158 Copynumber: 3.2 Consensus size: 157
29669038 CCTAGTCTAA
* * * *
29669048 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGTTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * ** * * ** * ** *
29669113 GCACGCAGGAGGGA-CTTGGCTGATCCCTGGGTTACACATTCTGCCACTTTGGCCGACTGAGCGC
65 GCACGTAGGGGGGATC-AAGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
29669177 TTGCATGCCCGTTTCGTGGGTTAGCTTAG
129 TCGCATGCCCGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
29669206 GCATAGGGAGTTCATTCCATGTCTGAGACCCAG-TTGGACCAAGGGTTGTGGCTGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGA-TCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
29669270 AGCACGTAGAGGGGGATCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTCAGCG
64 AGCACGTAG-GGGGGATCAAGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
29669335 CCCGCATGCTCGTTTCGTGGGTTGACTTAG
128 CTCGCATGCCCGTTTCGTGGGTTGGCTTAG
* * * * * *
29669365 GCATATGGAGTTGATGCCCAGTCTAAGGTCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCAT-TCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* *
29669430 GCACGTAGGGGGGATCAAGCTGGTCCCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCACT
65 GCACGTAGGGGGGATCAAGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGCT
* ** *
29669495 CGTACACCCGTTTCATGGGTTGGCTTAG
130 CGCATGCCCGTTTCGTGGGTTGGCTTAG
29669523 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCA-GTCTA
29669548 TGCATACGGA
Statistics
Matches: 270, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 6 0.02
158 143 0.53
159 117 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGGGGGGATCAAGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGCTC
GCATGCCCGTTTCGTGGGTTGGCTTAG
Found at i:29669919 original size:26 final size:26
Alignment explanation
Indices: 29669889--29669939 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29669879 GTTCACTTAG
*
29669889 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATAAGGAGTTCATCCCCAGTCTAT
*
29669915 GCATAAGGAGTTCATTCCCAGTCTA
1 GCATAAGGAGTTCATCCCCAGTCTA
29669940 AGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAT
Found at i:29670186 original size:355 final size:360
Alignment explanation
Indices: 29669504--29670153 Score: 854
Period size: 355 Copynumber: 1.8 Consensus size: 360
29669494 TCGTACACCC
** * *
29669504 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCATGTCTATGCATAAGGAGTTCATTCCCA
* * *
29669569 GTCTAAGATCAGATCAGACCAATGGTTACGGTAGCAGGACCAGCAGCAGGATTGACAGCATGCAG
66 GTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAGG---AGCAGCAGGA-T-A-AGCATGCAG
* * * *
29669634 GGGGATCGTGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGCTGAGCGCCCAGACGCTCG
125 GGGGACCGGGTCGATCCCAGACTTGCGCATTCTACCTCTCCGATCGCTGAGCGCCCAGACGCTCG
*
29669699 TTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
190 TTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
* * * * *
29669764 ATGGCAGTAGGACTGGCAGCACGTAGATGGGGATCGGGCTGATCCCCAGTTCACGTATTATGCCT
255 ATGGCAGTAGGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCAGTTCACGCATTATGCCT
29669829 CTCCAACCAGCATCTTCGATCGGTTTAGCCCCTGCACGCTT
320 CTCCAACCAGCATCTTCGATCGGTTTAGCCCCTGCACGCTT
29669870 GTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCCA-GTCTATGCATAAGGAGTTCATTCCC
1 GTTTCATGGGTTCACTTAGGCATACGGAGTTCAT-CCCATGTCTATGCATAAGGAGTTCATTCCC
* * * * *
29669934 AGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCA-G-G-ATC-GG-T-AGCATGCTGGTGGA
65 AGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAGGAGCAGCAGGATAAGCATGCAGGGGGA
* * *
29669993 CCGGG-CTGATCCCTAG-CTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGCCC-GCACGCTTGT
130 CCGGGTC-GATCCC-AGACTTGCGCATTCTACCTCTCCGATC-GCTGAGCGCCCAG-ACGCTCGT
* * *
29670055 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTG
191 TTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTA
*
29670120 TGGCAGT-GAGACCGGTAGCACGCAGAGGGGGACC
256 TGGCAGTAG-GACCGGCAGCACGCAGAGGGGGACC
29670154 AGGTCGACCC
Statistics
Matches: 250, Mismatches: 28, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
353 1 0.00
354 44 0.18
355 107 0.43
357 1 0.00
359 2 0.01
360 2 0.01
361 1 0.00
365 1 0.00
366 88 0.35
367 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (360 bp):
GTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCATGTCTATGCATAAGGAGTTCATTCCCA
GTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAGGAGCAGCAGGATAAGCATGCAGGGGGAC
CGGGTCGATCCCAGACTTGCGCATTCTACCTCTCCGATCGCTGAGCGCCCAGACGCTCGTTTCGT
GGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCA
GTAGGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCAGTTCACGCATTATGCCTCTCCAA
CCAGCATCTTCGATCGGTTTAGCCCCTGCACGCTT
Found at i:29670400 original size:157 final size:155
Alignment explanation
Indices: 29669915--29670404 Score: 461
Period size: 159 Copynumber: 3.1 Consensus size: 155
29669905 CCCAGTCTAT
* * *
29669915 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCA-ACCAGACCGAGGGTTGCGACAGTAGGATCGGTA
* * * * * *
29669980 GCATGCTG-GTGGACCGGG-CTGATCCCT-AGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCG
64 GCACGCAGAGGGGACCGGGTC-GATCCCTGA-CTTGTGCATTATGCCTCT-CGGTAGGCTGAGCG
* * * * *
29670042 CCCGCACGCTTGTTTCGTGGGTTGGCTTAG
126 CCTGAAAGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *
29670072 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGT-GAGACCGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAACCAGACCGAGGGTTGCGACAGTAG-GATCGGT
* * * * * *
29670136 AGCACGCAGAGGGGGACCAGGTCGACCCCTGGCTTGCGCATTATGCCTCTCTGGTCA-GTTCAGC
63 AGCACGCAGA-GGGGACCGGGTCGATCCCTGACTTGTGCATTATGCCTCTC-GGT-AGGCTGAGC
* *
29670200 GCCTGAACA-CCCGTTTCATGGGTTGACTTAG
125 GCCTGAA-AGCTCGTTTCATGGGTTGGCTTAG
* * * **
29670231 GCATATGGAGTTCATTCCTAGTTTAAGATCGAACCAAACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATC-AACCAGACCGAGGGTTGCGACAGTAGGATCGGTA
* * *
29670296 GCACGCAGAGGGGACTGGGTCGATCCCTGACTTGTGCATTTTGCCTCTCGGTAGGCTGAGCACCT
64 GCACGCAGAGGGGACCGGGTCGATCCCTGACTTGTGCATTATGCCTCTCGGTAGGCTGAGCGCCT
29670361 GAAAGCTCGTTTCATGGGTTGGCTTAG
129 GAAAGCTCGTTTCATGGGTTGGCTTAG
*
29670388 GCATACGAAGTTCATTC
1 GCATACGGAGTTCATTC
29670405 TGTGTCTAAG
Statistics
Matches: 264, Mismatches: 54, Indels: 30
0.76 0.16 0.09
Matches are distributed among these distances:
156 6 0.02
157 101 0.38
158 38 0.14
159 116 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAACCAGACCGAGGGTTGCGACAGTAGGATCGGTAGC
ACGCAGAGGGGACCGGGTCGATCCCTGACTTGTGCATTATGCCTCTCGGTAGGCTGAGCGCCTGA
AAGCTCGTTTCATGGGTTGGCTTAG
Found at i:29670634 original size:26 final size:26
Alignment explanation
Indices: 29670598--29670647 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29670588 GTTGACTTAG
29670598 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
29670624 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
29670648 TAGATCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29670958 original size:26 final size:26
Alignment explanation
Indices: 29670929--29670980 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29670919 GTCGGCTTAG
*
29670929 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29670955 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29670981 AATCAGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29672592 original size:159 final size:158
Alignment explanation
Indices: 29672235--29672612 Score: 401
Period size: 159 Copynumber: 2.4 Consensus size: 158
29672225 CTAAGCATTA
* * * * * *
29672235 GAGTTCATTCCCAGTCTAAGATCAGACCGGTCCAAGGGTTGCGGTAGCAGGATTGATAGTACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGACTGACAGCACGCA
* * * * * *
29672300 TGGGGGATTGAGCCGATCCTCGGCTTGCGCATTTTGCCTCTCCGGCTGGCTGAGCGCCCGCACGC
66 TGAGGGATCGAGCCGATCCTCGGCTTGCCCATTATGCCTCTCCGGCTGGCTCAGCGCCCGAACGC
* * *
29672365 CTGTTTCGTGGGTTGGCTTAGGCATAGG
131 CTGTTTCATGGGTTGACTTAGGCATACG
* ** *
29672393 GAGTTCATT-CCATGTCCAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGC-GGAACTGACAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAGG-ACTGACAGCAC
*
29672455 GCA-GAAAGGGATCGAGCCGATCC-CTGGCTTGCCCATTATGCCTCTTCGG-TCGGCTCAGCGCC
63 GCATG--AGGGATCGAGCCGATCCTC-GGCTTGCCCATTATGCCTCTCCGGCT-GGCTCAGCGCC
29672517 CGAACG-CTCGTTTCATGGGTTGACTTAGGCATACG
124 CGAACGCCT-GTTTCATGGGTTGACTTAGGCATACG
** ** * *
29672552 GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGACAGTAGGATTGACAGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGACTGACAGCA
29672613 TGCAGGTGAG
Statistics
Matches: 179, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
157 6 0.03
158 49 0.27
159 119 0.66
160 5 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGACTGACAGCACGCA
TGAGGGATCGAGCCGATCCTCGGCTTGCCCATTATGCCTCTCCGGCTGGCTCAGCGCCCGAACGC
CTGTTTCATGGGTTGACTTAGGCATACG
Found at i:29672739 original size:26 final size:25
Alignment explanation
Indices: 29672703--29672754 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
29672693 GTTGGCTTAG
29672703 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAA-GTCTAA
*
29672729 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
29672754 G
1 G
29672755 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:29672936 original size:26 final size:26
Alignment explanation
Indices: 29672900--29672951 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29672890 TAACTTAGGC
*
29672900 ATACGGAGTTCATCCCTAGTCTAAGA
1 ATACGAAGTTCATCCCTAGTCTAAGA
*
29672926 ATACGAAGTTCATTCCTAGTCTAAGA
1 ATACGAAGTTCATCCCTAGTCTAAGA
29672952 TCGGATTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATCCCTAGTCTAAGA
Found at i:29673398 original size:158 final size:157
Alignment explanation
Indices: 29672924--29673416 Score: 472
Period size: 158 Copynumber: 3.1 Consensus size: 157
29672914 CCTAGTCTAA
* * ** * ** *
29672924 GAATACGAAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTACGACAGCAGGATCGATA
1 GAATACGGAGTTCATTCCCAGTCTAAGATCGGAGCGGACTGAGGGTTGTGGCAGCAGGATCGATA
* * * ** * * * * *
29672989 GCACGTAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCACTCCGGCCGATTGAGCGCC
66 GCACGCAGGGGGGATTGGGTCGATCCCCAGTTTGC-CATTCTGCCTCTCCGGACGGTTGAGTGCC
** *
29673054 CGCGTGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** * *
29673082 GCATAGGGAGTTCATT-CCATGTCTATG-CCCCAGCTGGACTGATGGTTGTGGCAGCAGGATCGG
1 GAATACGGAGTTCATTCCCA-GTCTAAGATCGGAGC-GGACTGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
29673145 TAGCACACAGAGGGGGATCGGGTCGATCCCCGACTTGTG-CATTATGCCTCTCC-AACCGGCTCA
64 TAGCACGCAG-GGGGGATTGGGTCGATCCCC-AGTT-TGCCATTCTGCCTCTCCGGA-CGGTTGA
* * *
29673208 ATGCCTGCACGCTCGTTTCATGGGTTGACTTAG
125 GTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
29673241 GAATACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACTGAGGGTTGTGGCAGCAAGATTGACA
1 GAATACGGAGTTCATTCCCAGTCTAAGATCGGAGCGGACTGAGGGTTGTGGCAGCAGGATCGATA
*
29673306 GCATGCAGGGGGGATTGGGTCGATCCCCAGTTTGCCCATTCTGCCTCTCCGGACGGTTGAGTGCC
66 GCACGCAGGGGGGATTGGGTCGATCCCCAGTTTG-CCATTCTGCCTCTCCGGACGGTTGAGTGCC
*
29673371 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
29673399 GCATACGGAGTTCATTCC
1 GAATACGGAGTTCATTCC
29673417 ATGACTAAGC
Statistics
Matches: 260, Mismatches: 64, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 132 0.51
159 109 0.42
160 8 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GAATACGGAGTTCATTCCCAGTCTAAGATCGGAGCGGACTGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGGGGGATTGGGTCGATCCCCAGTTTGCCATTCTGCCTCTCCGGACGGTTGAGTGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:29673665 original size:195 final size:194
Alignment explanation
Indices: 29673302--29673667 Score: 520
Period size: 195 Copynumber: 1.9 Consensus size: 194
29673292 CAGCAAGATT
* ** * * *
29673302 GACAGCATGCAGGGGGGATTGGGTCGATCCCCAGTTTGCCCATTCTGCCTCTCCGGACGGTTGAG
1 GACAGCACGCAGGGGGGACCGGGTCGATCCCCACTTTG-CCATTCTACCTCTCCGGACGGCTGAG
* * *
29673367 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAAGCATACG
65 CGCCCGCACCCTCGTTTCGTGGGTGGGCTTAGGCATACGGAGTTCATTCCATGACTAAGCATACG
* **
29673432 GAGTTCATTCCCAGTCTAAGATCGAATTGGACCGAGGGTTGCGGGGCAGGACTAGCAGTAGGATC
130 AAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGGGCAGGACTAGCAGTAGGATC
29673497 GACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGTG-CATTCTACCTCTCC-GACCGGCTG
1 GACAGCACGCAGGGGGGACCGGGTCGATCCCC-ACTT-TGCCATTCTACCTCTCCGGA-CGGCTG
* * *
29673560 AGCGCCCGCACCCTCGTTTTGTGGGTGGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCATA
63 AGCGCCCGCACCCTCGTTTCGTGGGTGGGCTTAGGCATACGGAGTTCATTCCATGACTAAGCATA
* * *
29673625 TGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTG
128 CGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTG
29673668 TGGTAGGAGG
Statistics
Matches: 150, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
194 2 0.01
195 143 0.95
196 3 0.02
197 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (194 bp):
GACAGCACGCAGGGGGGACCGGGTCGATCCCCACTTTGCCATTCTACCTCTCCGGACGGCTGAGC
GCCCGCACCCTCGTTTCGTGGGTGGGCTTAGGCATACGGAGTTCATTCCATGACTAAGCATACGA
AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGGGCAGGACTAGCAGTAGGATC
Found at i:29673686 original size:696 final size:696
Alignment explanation
Indices: 29672163--29673686 Score: 1886
Period size: 696 Copynumber: 2.2 Consensus size: 696
29672153 CCTCTTAGGT
* * *
29672163 CGGCTGAGCGTCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATAGAATTT-ATCCCTAGTCT
1 CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATA-CGGATTTCATCCCTAGTCT
* * *
29672227 AAGCAT-T-AGAGTTCATTCCCAGTCTAAGATCAGACCGG-TCCAAGGGTTGCGGTAGCAGGATT
65 AAGCATATGA-AGTTCATTCCCAGTCTAAGATCGGACCGGAT-CGAGGGTTGCGGTAGCAGGATC
* * * * * * *
29672289 GATAGTACGCATGGGGGATTGAGCCGATCCTCGGCTTGCGCATTTTGCCTCTCCGGCTGGCTGAG
128 GATAGCACGCAGGGGGGACTGAGCCGATCCTCGGCTTGCGCATTCTGCCACTCCGGCCGACTGAG
* *
29672354 CGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAG
193 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAG
* * * *
29672419 TCGGACCGAGGGTTGTGGTAGCGGAACTGACAGCACGCAGAAAGGGATCGAGCCGATCCCTGGCT
258 TCGGACCGAGGGTTGTGGCAGCGGAACTGACAGCACACAGAAAGGGATCGAGCCGATCCCCGACT
* *** * *
29672484 TGCCCATTATGCCTCTTCGGTCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCAT
323 TGCCCATTATGCCTCTCCAACCGGCTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGAAT
* * * * *
29672549 ACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGACAGTAGGATTGACAGCAT
388 ACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGGTTGCGACAGCAAGATTGACAGCAT
* * * * *
29672614 GCAGGTGAGGCTGGGTCGGTCCTCGACTTGCGCATTCTGCCACTCCGGTCGGTTGAGCACCTGCA
453 GCAGGTGAGGCTGGGTCGATCCCCGACTTGCCCATTCTGCCACTCCGGACGGTTGAGCACCCGCA
* *
29672679 CGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTCAT
518 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGACTAAGCATACGGAGTTCAT
* * *
29672744 TCCAGTCTAAGATCGGATCGGATCGAGGGTTACGACAGCAAGACTAGCAGCAGGATCGGCAGCAC
583 TCCAGTCTAAGATCGAATCGGACCGAGGGTTACGACAGCAAGACTAGCAGCAGGATCGACAGCAC
* * * *
29672809 GTTAGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGAT
648 GTCAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGAC
* ** * * * * *
29672858 CGGGTGAGCGGTCACATGCTTGTTTCT-TGGGTTAACTTAGGCATACGGAGTTCATCCCTAGTCT
1 CGGCTGAGCGCCCGCACGCTCGTTT-TGTGGGTTGACTTAGGCATACGGATTTCATCCCTAGTCT
* * * ** * * **
29672922 AAGAATACGAAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTACGACAGCAGGATCGA
65 AAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGA
* * *
29672987 TAGCACGTAGGGGGGACTGGGCCGATCC-CTGGCTTGCGCATTCTGCCACTCCGGCCGATTGAGC
130 TAGCACGCAGGGGGGACTGAGCCGATCCTC-GGCTTGCGCATTCTGCCACTCCGGCCGACTGAGC
** * *
29673051 GCCCGCGTGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAG-
194 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGT
* * * ** ** * *
29673115 CTGGACTGATGGTTGTGGCAGCAGGATC-GGTAGCACACAGAGGGGGATCGGGTCGATCCCCGAC
259 C-GGACCGAGGGTTGTGGCAGC-GGAACTGACAGCACACAGAAAGGGATCGAGCCGATCCCCGAC
** * * *
29673179 TTGTGCATTATGCCTCTCCAACCGGCTCAATGCCTGCACGCTCGTTTCATGGGTTGACTTAGGAA
322 TTGCCCATTATGCCTCTCCAACCGGCTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGAA
* * *
29673244 TACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACTGAGGGTTGTGGCAGCAAGATTGACAGCA
387 TACGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGGTTGCGACAGCAAGATTGACAGCA
* * * * **
29673309 TGCAGG-GGGGATTGGGTCGATCCCC-AGTTTGCCCATTCTGCCTCTCCGGACGGTTGAGTGCCC
452 TGCAGGTGAGG-CTGGGTCGATCCCCGA-CTTGCCCATTCTGCCACTCCGGACGGTTGAGCACCC
*
29673372 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAAGCATACGGAGTT
515 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGACTAAGCATACGGAGTT
* * ** * *
29673437 CATTCCCAGTCTAAGATCGAATTGGACCGAGGGTTGCG-GGGCAGGACTAGCAGTAGGATCGACA
580 CATT-CCAGTCTAAGATCGAATCGGACCGAGGGTTACGACAGCAAGACTAGCAGCAGGATCGACA
**
29673501 GCACG-CAGGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTACCTCTCCGAC
644 GCACGTCA-GGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGAC
* * * *
29673554 CGGCTGAGCGCCCGCACCCTCGTTTTGTGGGTGGGCTTAGGCATACGGATTTCATTCC-ATGTCT
1 CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGATTTCATCCCTA-GTCT
* * *
29673618 AAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGTAGGAGGACCGA
65 AAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGA
29673683 TAGC
130 TAGC
29673687 GGGATCAACA
Statistics
Matches: 692, Mismatches: 123, Indels: 27
0.82 0.15 0.03
Matches are distributed among these distances:
694 4 0.01
695 61 0.09
696 593 0.86
697 34 0.05
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (696 bp):
CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGATTTCATCCCTAGTCTA
AGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGAT
AGCACGCAGGGGGGACTGAGCCGATCCTCGGCTTGCGCATTCTGCCACTCCGGCCGACTGAGCGC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGTCG
GACCGAGGGTTGTGGCAGCGGAACTGACAGCACACAGAAAGGGATCGAGCCGATCCCCGACTTGC
CCATTATGCCTCTCCAACCGGCTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGAATACG
GAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGGTTGCGACAGCAAGATTGACAGCATGCA
GGTGAGGCTGGGTCGATCCCCGACTTGCCCATTCTGCCACTCCGGACGGTTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGACTAAGCATACGGAGTTCATTCC
AGTCTAAGATCGAATCGGACCGAGGGTTACGACAGCAAGACTAGCAGCAGGATCGACAGCACGTC
AGGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGAC
Found at i:29674536 original size:26 final size:26
Alignment explanation
Indices: 29674459--29674536 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
29674449 GTTGACTTAG
29674459 GCATACGGAGTTCATTCCCAG-CTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
29674484 GCATACGGAGTTCA-ACCCTAGTTTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
29674510 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29674536 G
1 G
29674537 ATCAGACCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
24 3 0.07
25 16 0.36
26 23 0.51
27 3 0.07
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.