Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 318 of 402
Found at i:29674659 original size:368 final size:369
Alignment explanation
Indices: 29674113--29674866 Score: 917
Period size: 368 Copynumber: 2.0 Consensus size: 369
29674103 TCGGTTGACT
* * * * * * *
29674113 TAAGCATAGGGTGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCG
1 TAAGCATACGGAGTTCAACCCCAGTCTAAGCATAAGAAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * *
29674178 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGCG
66 GACCAAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCAGGCTGATCCCTGACTTACG
* * *
29674243 CATTCTACCTCTCCGGCCAGCTGAGCGCCCGTACACCCGTTTCATGGGTTAGCTGGGGCATAGGG
131 CATTCTACCTCTCCGGCCAGCTGAGCACCCGTACACCCATTTCATGGGTTAGCTGAGGCATAGGG
* * * * *
29674308 AGTTCATTCCATGTCTAAGCCCCAGTCGGA-CAGAGGGTTGTGGTAGTGGGACCGGTAGCACGCA
196 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCA-AGGGTTGTGGCAGCGGGACCAGTAGCACGCA
* * *
29674372 GAGGGGGACCGGGCCGATCC-CTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCTCG-AA
260 AAGGGGGACCGGGCCGATCCTC-AGCTTGCGCATTATGCCTCTCCGGCCGACTCAGTGC-CGAAA
* *
29674435 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-C
323 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * *
29674481 TAAGCATACGGAGTTCAACCCTAGTTTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCA
1 TAAGCATACGGAGTTCAACCCCAGTCTAAGCATAAGAAGTTCATTCCCAGTCTAAGATCAGACCA
* * *
29674546 GACCAAGGGTTGCGATAGTAGGATCGGCAGCACACAGAGGGGACCAGGCTGAT-CCTCGACTTAC
66 GACCAAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCAGGCTGATCCCT-GACTTAC
* ** * * * * * * * * *
29674610 GGATTCTTTCTTTCTGGCC-GATTGAGCACCCGTGCGCCTATTTCATGGGTTGGCTTAGGCGTAG
130 GCATTCTACCTCTCCGGCCAG-CTGAGCACCCGTACACCCATTTCATGGGTTAGCTGAGGCATAG
* *
29674674 GGAGTTCGTTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACTAGTAGCACGC
194 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACCAGTAGCACGC
* * * * * *
29674739 AAAGGGGGACTGGGCTGATCCTCAGCTTGCGGATTATGCCTCTCCTGTCGACTCAGTGCCGAAAT
259 AAAGGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGTGCCGAAAC
*
29674804 GCTCATTTCGTGGGTTGACTTAGGCATACGGTGTTCATCCCCAGTC
324 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* *
29674850 TAAGCATATGAAGTTCA
1 TAAGCATACGGAGTTCA
29674867 TTCCCAATCT
Statistics
Matches: 324, Mismatches: 56, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
367 6 0.02
368 299 0.92
369 19 0.06
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (369 bp):
TAAGCATACGGAGTTCAACCCCAGTCTAAGCATAAGAAGTTCATTCCCAGTCTAAGATCAGACCA
GACCAAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCAGGCTGATCCCTGACTTACG
CATTCTACCTCTCCGGCCAGCTGAGCACCCGTACACCCATTTCATGGGTTAGCTGAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACCAGTAGCACGCAA
AGGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGTGCCGAAACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
Found at i:29675408 original size:26 final size:26
Alignment explanation
Indices: 29675378--29675430 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29675368 GTTGACTTAG
*
29675378 GCATACGTAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
29675404 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29675430 G
1 G
29675431 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29675418 original size:367 final size:342
Alignment explanation
Indices: 29674948--29675734 Score: 774
Period size: 367 Copynumber: 2.2 Consensus size: 342
29674938 CGATCCCTGA
* * * * * * * * *
29674948 CTTGCGCATTTTGCCTCACCGACTGGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
1 CTTGTGCATTATGCCTCTCCGACCGACTAAGCGCACGAACGCTCATTTCATGGGTTGACTTAGGC
* * * *
29675013 ATACAGT-GTTCATTCCATCTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACC
66 ATAC-GTAGTTCATCCCATCTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACA
* *
29675077 GAGGGTTGCGGTAACAGGACCAGCAGCAGGATCGACAGTACGCAGGAGGGACCAGGTCGATCC-C
130 GAGGGTTGCGGT---------AGCA--A-GATCGACAGAACGCAGGAGGGACCAGGCCGATCCTC
* * * * * *
29675141 TGGCTTACGCATTCTGCCTCTTCGGGC-GATTGACCGTCTGCATGCTCATTTCGTGGGTTGGCTT
183 -GGCTTACGCATTCTGCCTC-TCCGGCTGACTGACCGCCTGCACGCCCATTTCGTGGGTTGACTT
* *
29675205 AGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGCCGAATCGAGGGTTATGGTAGCAG-GACCG
246 AGGCATAGGGAGTTCATTCCATGTC-AAGCCCCAGCCGAATCGAGGG-T-T-GTAGCAGTG--CG
* *
29675269 ACAGCGGGATCGACAGCACACAGAAGGGGATCGTGCCGACCCCCGG
305 AC--C-GG-T----AGCACACAGAAGGGGATCGGGCCAACCCCCGG
* *
29675315 CTTGTGCATTATGCCTCTCCGACCGACTGAGCGCACGTACGCTCATTTCATGGGTTGACTTAGGC
1 CTTGTGCATTATGCCTCTCCGACCGACTAAGCGCACGAACGCTCATTTCATGGGTTGACTTAGGC
* * * *
29675380 ATACGTAGTTCATCCC-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACA
66 ATACGTAGTTCATCCCAT-CTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACA
* * * *
29675444 GAGGGTTGCGGTATCAAGATTGACAGAACGCAGGAGGGATCAGGCCGATCCTCGGCTTGCGCATT
130 GAGGGTTGCGGTAGCAAGATCGACAGAACGCAGGAGGGACCAGGCCGATCCTCGGCTTACGCATT
** * * * *
29675509 CTGCCTCTCCGGCTGACTGAGTGCCTGTACGCCCGTTTTGTGGGTTTACTTAGGCATAGGGAGTT
195 CTGCCTCTCCGGCTGACTGACCGCCTGCACGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTT
* * * * * *
29675574 CATTCCATGTCAAGCCCCAGCTGGATCGAGGGTTGTGGCAGTGCGACCGGTAGTACGCAGAGGGG
260 CATTCCATGTCAAGCCCCAGCCGAATCGAGGGTTGTAGCAGTGCGACCGGTAGCACACAGAAGGG
** *
29675639 GATCGGGTTAATCCCCGG
325 GATCGGGCCAACCCCCGG
* * * *
29675657 CTTGTGCATTATGTCTCTCCGACCGACTCAGCGCATGAACGCTCATTTCATGGGTCGACTTAGGC
1 CTTGTGCATTATGCCTCTCCGACCGACTAAGCGCACGAACGCTCATTTCATGGGTTGACTTAGGC
*
29675722 ATACGGAGTTCAT
66 ATACGTAGTTCAT
29675735 TCACAGTCTA
Statistics
Matches: 360, Mismatches: 55, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
342 96 0.27
346 1 0.00
347 2 0.01
348 1 0.00
350 4 0.01
351 6 0.02
352 2 0.01
353 1 0.00
354 23 0.06
355 98 0.27
356 2 0.01
358 3 0.01
366 3 0.01
367 118 0.33
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (342 bp):
CTTGTGCATTATGCCTCTCCGACCGACTAAGCGCACGAACGCTCATTTCATGGGTTGACTTAGGC
ATACGTAGTTCATCCCATCTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACAG
AGGGTTGCGGTAGCAAGATCGACAGAACGCAGGAGGGACCAGGCCGATCCTCGGCTTACGCATTC
TGCCTCTCCGGCTGACTGACCGCCTGCACGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTC
ATTCCATGTCAAGCCCCAGCCGAATCGAGGGTTGTAGCAGTGCGACCGGTAGCACACAGAAGGGG
ATCGGGCCAACCCCCGG
Found at i:29676249 original size:26 final size:26
Alignment explanation
Indices: 29676219--29676271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29676209 GTTGACTTAG
29676219 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
29676245 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29676271 G
1 G
29676272 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29676809 original size:841 final size:841
Alignment explanation
Indices: 29675034--29676846 Score: 2253
Period size: 841 Copynumber: 2.2 Consensus size: 841
29675024 ATTCCATCTC
* * * *
29675034 TAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACC-AGACCGAGGGTTGCGGTAACAGGACC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAAGGTTGCGGTAACAGGACC
* * * * *
29675098 AGCAGCAGGATCGACAGTACGCAGGAGGGACC-AGGTCGATCCCTGGCTTACGCATTCTGCCTCT
65 AGCAGTAGGATCGACAGCACGCAGGGGGGACCGA-GTCGATCCCCGGCTTATGCATTCTGCCTCT
* * * *
29675162 TCGGGCGATTGACCGTCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAT
129 TCGGGCGATTGACCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * *
29675227 GTCTAAGCCCTAGCCGAATCGAGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAGCACACAG
194 GTCTAAGCCCTAGCCGAACCGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAACACACAG
* ** * *
29675292 AAGGGGATCGTGCCGACCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGCGCACGTACGC
259 AAGGGGACCGTGCCGACCCCCGGCTTAAGCATTATGCCTCTCCAACCGACTGAGCACACGTACGC
* *
29675357 TCATTTCATGGGTTGACTTAGGCATACGTAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCC
324 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * *
29675422 CAGTCTAAGATCAAATCGGACAGAGGGTTGCGGTATCAAGATTGACAGAACGCAGGAGGGATCAG
389 CAGTCTAAGATCAAATAGGACAGAGGGTTACGATAGCAAGATCGACAGAACGCAGGAGGGACCAG
* * ** * * ** *
29675487 GCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGACTGAGTGCCTGTACGCCCGTTTTGTGG
454 GCCGATCCTCGGCTTACGCATTCTACCTCTCCGGCTGACTGAGCACCCGCACGCCCGTTTCATAG
* * ** * *
29675552 GTTTACTTAGGCATAGGGAGTTCATTCCATGTCAAGCCCCAGCTGGATCGAGGGTTGTGGCAGTG
519 GTTGACTTAGGCATAGGGAGTTCATTCCATATCAAGCCCCAGCTAAATCGAGGATTGTGGCAGCG
* * * ** * * **
29675617 CGACCGGTAGTACGCAGAGGGGGATCGGGTTAATCCCCGGCTTGTGCATTATGTCTCTCCGACCG
584 CGACCGGCAGCACGCAGAGGGGGATCGAGCCAATCCCCGCCCTACGCATTATGTCTCTCCGACCG
*
29675682 ACTCAGCGCATGAACGCTCATTTCATGGGTCGACTTAGGCATACGGAGTTCATTCACAGTCTAAG
649 ACTCAGCGCACGAACGCTCATTTCATGGGTCGACTTAGGCATACGGAGTTCATTCACAGTCTAAG
* * *
29675747 ATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGTACGTAGAGGAGACCGGGCCGGTCCC
714 ATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGTACGCAGAGGAGACCAGGCCGATCCC
* *
29675812 CTGCTTGCGCATTCTGCCTCTCCGGTCGGCTGGGTGCCCGTACGCTCATTTCATGGGTTGGCT
779 CTGCTTGCGCATTCTGCCTCTCCAGTCGGCTGGGTGCCCGCACGCTCATTTCATGGGTTGGCT
* *
29675875 TAGGCATACGGAGTTCATT-CCATGTCTAAGATCGGACCTG-ATCG-AGGTTTGCGGTAACAGGA
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACC-GAACCGAAGG-TTGCGGTAACAGGA
** * * * *
29675937 CCAGCAGTAGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCAGCTTGTGTATTCTACCTC
63 CCAGCAGTAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTATGCATTCTGCCTC
* * **
29676002 TTCGGGCGGTTGACCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTT
128 TTCGGGCGATTGACCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * *
29676067 TGTTTAAGCCGC-AGCC-AGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAACACG
193 TGTCTAAGCC-CTAGCCGA-ACCGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAACACA
* * * * *
29676130 TAGAGGGGGACCAG-GCTGACCCCCGGCTTAAGCATTATGCCTCTCCAACCGGCTGAGCACCCGT
256 CAGAAGGGGACC-GTGCCGACCCCCGGCTTAAGCATTATGCCTCTCCAACCGACTGAGCACACGT
* *
29676194 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
320 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * * * *
29676259 TTCCTAGTCTAAGATCAGATAGGACAGAGGGTTATGATAGCAAGATCGACAGCACGCAGGGGGGA
385 TTCCCAGTCTAAGATCAAATAGGACAGAGGGTTACGATAGCAAGATCGACAGAACGCAGGAGGGA
* * * * *
29676324 CCGGGCCGATCCTCGGTTTATGCATTCTACCTCTCCGG-TCGGCTGAGCACCCGCACGCTCGTTT
450 CCAGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGGCT-GACTGAGCACCCGCACGCCCGTTT
* *
29676388 CATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCAAAG-CCTAG-TCAAATCGAGGATTGT
514 CATAGGTTGACTTAGGCATAGGGAGTTCATTCCATATC-AAGCCCCAGCT-AAATCGAGGATTGT
*
29676451 GGCAGCGCGATCGGCAGCACGCAGAGGGGGATCGAGCCAATCCCCGCCCTACGCATTATGTCTCT
577 GGCAGCGCGACCGGCAGCACGCAGAGGGGGATCGAGCCAATCCCCGCCCTACGCATTATGTCTCT
* * * * ** * *
29676516 CC-AGTCGACTCAGTGCCCGAACGCTCGTTTTGTGGGTTGACTTAGG-ATAGGGAGTTCATTGC-
642 CCGA-CCGACTCAGCGCACGAACGCTCATTTCATGGGTCGACTTAGGCATACGGAGTTCATT-CA
* * * * *
29676578 CAGTCTAAGATCGGATCGGA-TCGAGGGTTGCAGCA-A-TAGGATCGACAGTATGCAG-GGGGAC
705 CAGTCTAAGATCAGACCGGACT-GAGGGTTGC-G-ATAGCAGGATCGACAGTACGCAGAGGAGAC
*
29676639 CAGGCCGAT-CCCTGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGGGTGCTCGCACGCTCATTTC
767 CAGGCCGATCCCCT-GCTTGCGCATTCTGCCTCTCCAGTCGGCTGGGTGCCCGCACGCTCATTTC
29676703 ATGGGTTGGCT
831 ATGGGTTGGCT
** ** *
29676714 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAAGGTTGCAATAGTAGGACCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAAGGTTGCGGTAACAGGACCA
* * * *
29676779 GTAGTAGGATCGACAGGATGAAGGGGGGGGACCCGA-TCGATCCCCGGCTTATGCATTCTGCCTC
66 GCAGTAGGATCGACAGCACGCA--GGGGGGA-CCGAGTCGATCCCCGGCTTATGCATTCTGCCTC
29676843 TTCG
128 TTCG
29676847 ACCGGCCTCT
Statistics
Matches: 824, Mismatches: 125, Indels: 46
0.83 0.13 0.05
Matches are distributed among these distances:
838 5 0.01
839 135 0.16
840 70 0.08
841 603 0.73
842 11 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (841 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAAGGTTGCGGTAACAGGACCA
GCAGTAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTATGCATTCTGCCTCTTC
GGGCGATTGACCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCTAGCCGAACCGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAACACACAGAA
GGGGACCGTGCCGACCCCCGGCTTAAGCATTATGCCTCTCCAACCGACTGAGCACACGTACGCTC
ATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAAATAGGACAGAGGGTTACGATAGCAAGATCGACAGAACGCAGGAGGGACCAGGC
CGATCCTCGGCTTACGCATTCTACCTCTCCGGCTGACTGAGCACCCGCACGCCCGTTTCATAGGT
TGACTTAGGCATAGGGAGTTCATTCCATATCAAGCCCCAGCTAAATCGAGGATTGTGGCAGCGCG
ACCGGCAGCACGCAGAGGGGGATCGAGCCAATCCCCGCCCTACGCATTATGTCTCTCCGACCGAC
TCAGCGCACGAACGCTCATTTCATGGGTCGACTTAGGCATACGGAGTTCATTCACAGTCTAAGAT
CAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGTACGCAGAGGAGACCAGGCCGATCCCCT
GCTTGCGCATTCTGCCTCTCCAGTCGGCTGGGTGCCCGCACGCTCATTTCATGGGTTGGCT
Found at i:29676953 original size:26 final size:26
Alignment explanation
Indices: 29676902--29676954 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29676892 GTTGACTTAG
* *
29676902 GCATACGGAGTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGGCTAA
29676928 GCATACGGAGTTCATTCCC-AGGCTAA
1 GCATACGGAGTTCA-TCCCTAGGCTAA
29676954 G
1 G
29676955 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGGCTAA
Found at i:29677557 original size:16 final size:16
Alignment explanation
Indices: 29677536--29677582 Score: 94
Period size: 16 Copynumber: 2.9 Consensus size: 16
29677526 TTAAAGAGCA
29677536 TTTGAGATTTTATAGG
1 TTTGAGATTTTATAGG
29677552 TTTGAGATTTTATAGG
1 TTTGAGATTTTATAGG
29677568 TTTGAGATTTTATAG
1 TTTGAGATTTTATAG
29677583 CAATTAAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (16 bp):
TTTGAGATTTTATAGG
Found at i:29678015 original size:26 final size:26
Alignment explanation
Indices: 29677986--29678036 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29677976 GTTGACTTAG
29677986 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * * *
29678012 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
29678037 GGATCGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:29678518 original size:26 final size:26
Alignment explanation
Indices: 29678488--29678540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29678478 GTTGGCTTAG
*
29678488 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29678514 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29678540 G
1 G
29678541 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29678767 original size:195 final size:196
Alignment explanation
Indices: 29678380--29678767 Score: 476
Period size: 195 Copynumber: 2.0 Consensus size: 196
29678370 AGGGTTACGA
* * * * * **
29678380 TAGCAAGATCAACAGCACGCAGAGGGGGATCGAGCTGGTCCTCGGCTTGCACATTCTGCCTCTTT
1 TAGCAAGATCAACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCC
* * *
29678445 GGCCGGTTGAGCGCTCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATAT
* * * * *
29678510 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGAATCGGGCCAAGGGTTGGGGTAGCAGGACT
131 CTAAGCATACAGAGTTCATTCCCAGCCTAAGATAGAA-CGGACCAAGGGTTGCGGCAGCAGGACT
29678575 AG
195 AG
* * *
29678577 TAGCAGGATCAGCAGCACGCAGA-GGGGACCG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCC
1 TAGCAAGATCAACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCC
* ** *
29678640 GGCCGGTTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATAT
66 GGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATAT
* * * ** *
29678705 CTATGCATACGGGGTTCATTCTTAGCCTAAGATCAG-ACAGGATCAAGGGTTGCGGCAGCAGGA
131 CTAAGCATACAGAGTTCATTCCCAGCCTAAGAT-AGAAC-GGACCAAGGGTTGCGGCAGCAGGA
29678768 TTGATAGCAC
Statistics
Matches: 161, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
194 1 0.01
195 131 0.81
196 8 0.05
197 21 0.13
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (196 bp):
TAGCAAGATCAACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCC
GGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATAT
CTAAGCATACAGAGTTCATTCCCAGCCTAAGATAGAACGGACCAAGGGTTGCGGCAGCAGGACTA
G
Found at i:29679273 original size:26 final size:26
Alignment explanation
Indices: 29679223--29679275 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29679213 GTTGGCTTAG
* *
29679223 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
29679249 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
29679275 G
1 G
29679276 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:29679463 original size:26 final size:26
Alignment explanation
Indices: 29679433--29679485 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29679423 GTTGACTTAG
*
29679433 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
*
29679459 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
29679485 G
1 G
29679486 ATAAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:29681544 original size:26 final size:26
Alignment explanation
Indices: 29681514--29681566 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29681504 GTTGGCTTAG
*
29681514 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
29681540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29681566 G
1 G
29681567 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29682278 original size:26 final size:26
Alignment explanation
Indices: 29682249--29682301 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29682239 GTTGACTTAG
*
29682249 GCATAAGGTGTTCATCCCCAATCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
* * *
29682275 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
29682301 G
1 G
29682302 ATCAGACGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:29682639 original size:159 final size:157
Alignment explanation
Indices: 29682282--29682710 Score: 436
Period size: 159 Copynumber: 2.7 Consensus size: 157
29682272 TAAGCATATG
* *
29682282 GAGTTCATTCCCAGTCTAAGATCAGA-CGGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * * *
29682346 AGGAGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCAGCTGAGTGCCCGCATA
65 AGAAGGGATCGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCAGCTCAGTGCCCGCACA
* * *
29682411 CCCGTTCTGTGGGTTGGCTTAGGCATAG
130 CCCATTCTGTGGGTTGACTTAGGCATAA
* ** * * * * * *
29682439 GAAGTTCATT-CAATGTCTAAGCCCCAG-TCAGACGGAGGGTTGTGGCAGCGGGACCGGTAGCAC
1 G-AGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCAC
* * * *
29682502 GCAGAAGGGGATCG-GGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG-GCTGGCTCAGTGCCC
63 GCAGAA-GGGATCGAGCT-GATCCCCGACTTGCGCATTATGCCTCTCCGATC-AGCTCAGTGCCC
* *
29682565 GCACACTCATTTTGTGGGTTGACTTAGGCATACA
125 GCACACCCATTCTGTGGGTTGACTTAGGCATA-A
* *
29682599 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAAGATCGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
** * * * * * * *
29682664 GGGGGGACCGAACCGGTCCCCGACTTGCGCATTCTTCCTCTTCGATC
66 GAAGGGATCGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATC
29682711 GGTTGAATGC
Statistics
Matches: 214, Mismatches: 46, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 83 0.39
159 125 0.58
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
GAAGGGATCGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCAGCTCAGTGCCCGCACAC
CCATTCTGTGGGTTGACTTAGGCATAA
Found at i:29682755 original size:158 final size:158
Alignment explanation
Indices: 29682283--29682776 Score: 516
Period size: 158 Copynumber: 3.1 Consensus size: 158
29682273 AAGCATATGG
* *
29682283 AGTTCATTCCCA-GTCTAAGATCAGA-CGGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGC
1 AGTTCATT-CCATGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * *
29682346 AGGAGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCAGCTGAGTGCCCGCATA
64 AGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCATA
** *
29682411 C-CCGTTCTGTGGGTTGGCTTAGGCATAGGA
129 CTCATTTC-GTGGGTTGGCTTAGGCATACGA
* ** * * * * * *
29682441 AGTTCATTCAATGTCTAAGCCCCAG-TCAGACGGAGGGTTGTGGCAGCGGGACCGGTAGCACGCA
1 AGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * * * * *
29682505 GAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG-GCTGGCTCAGTGCCCGCAC
65 G-GGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGTGCCCGCAT
* *
29682569 ACTCATTTTGTGGGTTGACTTAGGCATAC-A
128 ACTCATTTCGTGGGTTGGCTTAGGCATACGA
* *
29682599 GAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAAGATCGATAGCACGC
1 -AGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * * * * * * * *
29682663 AGGGGGGACCGAACCGGTCCCCGACTTGCGCATTCTTCCTCTTCGATCGGTTGAATGCCTGCATG
64 AGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCATA
*
29682728 CTAATTTCGTGGGTTGGCTTAGGCATACGA
129 CTCATTTCGTGGGTTGGCTTAGGCATACGA
29682758 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
29682777 CATACGGAGT
Statistics
Matches: 267, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 134 0.50
159 123 0.46
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAG
GGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCATACT
CATTTCGTGGGTTGGCTTAGGCATACGA
Found at i:29682779 original size:26 final size:26
Alignment explanation
Indices: 29682750--29682802 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29682740 GTTGGCTTAG
29682750 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
29682776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29682802 G
1 G
29682803 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:29682927 original size:184 final size:184
Alignment explanation
Indices: 29682592--29683009 Score: 506
Period size: 184 Copynumber: 2.3 Consensus size: 184
29682582 GTTGACTTAG
* * * *
29682592 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGACCGACA
* * * * ** *
29682657 GCACGCAGGGGGGACCGAACCGGTCCCCGACTTGCGCATTCTTCCTCTTCGATCGGTTGAATGCC
66 GCACGCAGGGGGGACCGAACCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGACTGAACGCC
* * * * * *
29682722 TGCATGCTAATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
131 TGCACGCTAATTTCATGGGTTGACTTAGACATACGAAGTTCATCCCAAGTCTAA
* *
29682776 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGGCAGCAGGACC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGACCGA-C
* * * *
29682840 AGCATGCAGGGGGGACC-AAGTCGATCCCCGGCTTACGCATTCTGCCTC-TCTGGCCGACT-AAG
65 AGCACGCAGGGGGGACCGAA-CCGATCCCCGACTTACGCATTCTGCCTCTTC-GACCGACTGAA-
**
29682902 CGCCCT-CACGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCATCCCAAGTCTAA
127 CG-CCTGCACGCTAATTTCATGGGTTGACTTAGACATACGAAGTTCATCCCAAGTCTAA
*
29682960 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCG
29683010 ATAATAGGAT
Statistics
Matches: 201, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
183 8 0.04
184 190 0.95
185 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGACCGACA
GCACGCAGGGGGGACCGAACCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGACTGAACGCC
TGCACGCTAATTTCATGGGTTGACTTAGACATACGAAGTTCATCCCAAGTCTAA
Found at i:29682965 original size:26 final size:26
Alignment explanation
Indices: 29682935--29682986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29682925 TTGACTTAGA
29682935 CATACGAAGTTCA-TCCCAAGTCTAAG
1 CATACGAAGTTCATTCCC-AGTCTAAG
*
29682961 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
29682987 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:29683308 original size:26 final size:26
Alignment explanation
Indices: 29683279--29683329 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29683269 TTGACTTAAG
29683279 CATACGGAGTTCACCCCCAGTCTAAT
1 CATACGGAGTTCACCCCCAGTCTAAT
**
29683305 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCACCCCCAGTCTAA
29683330 GATCGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCACCCCCAGTCTAAT
Found at i:29683499 original size:26 final size:26
Alignment explanation
Indices: 29683462--29683514 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29683452 GTTGGCTTAG
29683462 GCATATGAAGTTCATTCC-ATGTCTAA
1 GCATATGAAGTTCATTCCTA-GTCTAA
* *
29683488 GCATATGGAGTTCTTTCCTAGTCTAA
1 GCATATGAAGTTCATTCCTAGTCTAA
29683514 G
1 G
29683515 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCTAGTCTAA
Found at i:29683872 original size:26 final size:26
Alignment explanation
Indices: 29683843--29683895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29683833 GTTGACTTTG
29683843 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* *
29683869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
29683895 G
1 G
29683896 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:29684251 original size:159 final size:157
Alignment explanation
Indices: 29683869--29684404 Score: 425
Period size: 158 Copynumber: 3.4 Consensus size: 157
29683859 CCCAGTCTAA
* *** * * * * * *
29683869 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGGTCGAGGTTTACGACAGCAAGATC-AGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT-GGGCAGCAGGACCGA-C
* * * * * * * * * * * * *
29683933 AGCACGTAGGGGGGACCAGACTGATCACTGGCTTGCGCATTCTGCGTCTCCGGCTGGCTAAGCGT
64 AGCACGAAAGAGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCTAGCTCAGTGC
** * * * ** *
29683998 CCATATGCCCATTTCGTGTTTTGGCTTAG
129 CCGCACGCTCATTTCATGGGTTGACTTAG
** ** * *
29684027 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGTCA-GACCG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTG-GGCAG-CAGGACCG
* * * * * * *
29684089 ACAGCATGCAAAGAGGGATCGGGTCGAT-CTTCGGCTTGCACATTTTGCCTCTTCGGCTGGCTCA
62 ACAGCACG-AAAGAGGGACCGGGCCGATCCCT-GGCTTGCACATTCTGCCTCTCCGGCTAGCTCA
29684153 GTGCCCGCACGCTCATTTCATGGGTTGACTTAG
125 GTGCCCGCACGCTCATTTCATGGGTTGACTTAG
** * * *
29684186 GCATACAGAGTTTGTTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTG-GGCAGCAGGACCGACA
* * * * * *
29684251 GCACGTAAGGGGGACCGTGCCGGTCCCTGGCTTGCACATTCTGCCTCTCCGGTTAGCTGAGTGCC
65 GCACGAAAGAGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCTAGCTCAGTGCC
* *
29684316 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGACTTAG
*
29684344 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGGGACAGCAGGACC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGGG-CAGCAGGACC
29684405 AACAACAAAA
Statistics
Matches: 298, Mismatches: 68, Indels: 24
0.76 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 173 0.58
159 117 0.39
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGGGCAGCAGGACCGACAG
CACGAAAGAGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCTAGCTCAGTGCCC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:29684653 original size:13 final size:13
Alignment explanation
Indices: 29684635--29684661 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
29684625 GCACATTATG
29684635 CCTCTTCGACCGA
1 CCTCTTCGACCGA
29684648 CCTCTTCGACCGA
1 CCTCTTCGACCGA
29684661 C
1 C
29684662 TGAGCGCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.48, G:0.15, T:0.22
Consensus pattern (13 bp):
CCTCTTCGACCGA
Found at i:29685869 original size:158 final size:157
Alignment explanation
Indices: 29685392--29685893 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 157
29685382 CCCAGTCTAA
** * * * * *
29685392 GCATACGGAGTTCATTCGTAGTCTAAGATCAGACCGGACCGAAGGTTGCAGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCAACA
* *** *
29685457 GCACGCAGGGGGGACTGGGTCGATCCCCAGCTTACGCATTC-TGTTGCTTCGGCCAGCTGAGTGC
66 GCACGTAGGGGGGACTGGGTCGATCCCCAGCTTACGCATTCAACCT-CTTC-GCCGGCTGAGTGC
* *
29685521 CCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCATTTAGTGGGTTGGCTTAG
* ** * * * ** *
29685550 GCATAGGGAGTTCATTCCTTGTCGAAG-TCCCAG-CCGGACTGAGGGCTGTGGCAGCGGGACCAA
1 GCATACGGAGTTCATTCCCAGTCTAAGAT--CAGACCGGACTGAGGGTTGCGGCAGTAGGATCAA
* * * * * * * *
29685613 CAGCACGTAGAGGGGGACCGGGTCTATCCCCGGCTTGCGGATT-ATGCCTCTTCGATCGGCTCAG
64 CAGCACGTAG-GGGGGACTGGGTCGATCCCCAGCTTACGCATTCA-ACCTCTTCG-CCGGCTGAG
* **
29685677 TGCTCGCACGCTCATTTAGTGGGTTAACTTAG
126 TGCCCGCACGCTCATTTAGTGGGTTGGCTTAG
* * ** *
29685709 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGGCAGTAGGATCTACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCAACA
* * * * *
29685774 GCACGTAGGGGGGACTGGGTCGGTCCCCAACTTACGCATTCAACCTCTCCAGCCGGTTGAGCGCC
66 GCACGTAGGGGGGACTGGGTCGATCCCCAGCTTACGCATTCAACCTCTTC-GCCGGCTGAGTGCC
* *
29685839 CGCATGCTCATTTTGTGGGTTGGCTTAG
130 CGCACGCTCATTTAGTGGGTTGGCTTAG
29685867 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
29685894 CATATGGAGT
Statistics
Matches: 269, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 140 0.52
159 123 0.46
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCAACA
GCACGTAGGGGGGACTGGGTCGATCCCCAGCTTACGCATTCAACCTCTTCGCCGGCTGAGTGCCC
GCACGCTCATTTAGTGGGTTGGCTTAG
Found at i:29685896 original size:26 final size:26
Alignment explanation
Indices: 29685867--29685919 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29685857 GTTGGCTTAG
29685867 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
29685893 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
29685919 G
1 G
29685920 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29686247 original size:159 final size:157
Alignment explanation
Indices: 29686047--29686374 Score: 365
Period size: 158 Copynumber: 2.1 Consensus size: 157
29686037 CACATGCCCG
* * *
29686047 TTTCATGGGTTGGCTTAGGCATCAGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTT
1 TTTCATGGGTTGACTTAGGCATCAGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGTT
* * ** * * * *
29686111 GTCGCAGCAGGACCGGCAGCATGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCT
65 GACGCACCAGGACCAACAGCATGCAG-GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCT
** *
29686176 CTTCC-GCTGGCTCAGCGCCCGCACGCTCA
129 C-TCCGGCCAGCTCAGCACCCGCACGCTCA
* * * *
29686205 TTTCATGGGTTGACTTATGCGTACAGAGTTCATTCC-TAGTCTAAGATCGGACCGGACCGAGGGT
1 TTTCATGGGTTGACTTAGGCAT-CAGAGTTCATTCCAT-GTCTAAGACCAGACCGGACCGAGGGT
* * * *
29686269 TGAGGCACCAGGATCAACAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGTATTCTGCCT
64 TGACGCACCAGGACCAACAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCT
*
29686334 CTCCGGCCAGCTGAGCACCCGCACGCTCA
129 CTCCGGCCAGCTCAGCACCCGCACGCTCA
**
29686363 TTTTGTGGGTTG
1 TTTCATGGGTTG
29686375 GCTTCGATAT
Statistics
Matches: 141, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 86 0.61
159 52 0.37
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
TTTCATGGGTTGACTTAGGCATCAGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTTG
ACGCACCAGGACCAACAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCT
CCGGCCAGCTCAGCACCCGCACGCTCA
Found at i:29686355 original size:158 final size:157
Alignment explanation
Indices: 29685959--29686374 Score: 415
Period size: 159 Copynumber: 2.6 Consensus size: 157
29685949 AGACCAGCAG
* ** * * **
29685959 CAGGATCGGCAGCACGCAGGGGGGGATCAAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGAT
1 CAGGATCGGCAGCATGCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
* * * * * *
29686024 CGGCTGAGCCCTCCACATGCCCGTTTCATGGGTTGGCTTAGGCATCAGAGTTCATTCCATGTCTA
65 CGGCTGAGCAC-CCGCACGCTCATTTCATGGGTTGACTTAGGCATCAGAGTTCATTCCATGTCTA
* * *
29686089 AGCCCCAGCTGGACCGAGGGTTGTCGCAG
129 AGCCCCAGCCGGACCGAGGGTTGACGCAC
* * * * *
29686118 CAGGACCGGCAGCATGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCC-G
1 CAGGATCGGCAGCATGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGG
* * * * *
29686182 CTGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCGTACAGAGTTCATTCC-TAGTC
64 CCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCAT-CAGAGTTCATTCCAT-GTC
** * *
29686246 TAAG-ATCGGACCGGACCGAGGGTTGAGGCAC
127 TAAGCCCCAG-CCGGACCGAGGGTTGACGCAC
** * *
29686277 CAGGATCAACAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGGCC
1 CAGGATCGGCAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC
* **
29686342 AGCTGAGCACCCGCACGCTCATTTTGTGGGTTG
66 GGCTGAGCACCCGCACGCTCATTTCATGGGTTG
29686375 GCTTCGATAT
Statistics
Matches: 207, Mismatches: 44, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 94 0.45
159 107 0.52
160 3 0.01
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (157 bp):
CAGGATCGGCAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC
GGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATCAGAGTTCATTCCATGTCTAAG
CCCCAGCCGGACCGAGGGTTGACGCAC
Found at i:29686392 original size:158 final size:158
Alignment explanation
Indices: 29686099--29686409 Score: 358
Period size: 158 Copynumber: 2.0 Consensus size: 158
29686089 AGCCCCAGCT
* * ** * * * *
29686099 GGACCGAGGGTTGTCGCAGCAGGACCGGCAGCATGTAGAGGGGGATCGGGTCGATCCTCGGCTTG
1 GGACCGAGGGTTGACGCACCAGGACCAACAGCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTA
** * *
29686164 CGCATTATGCCTCTTCCGCTGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCGTAC
66 CGCATTATGCCTCTTCCGCCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAT-CATAC
* *
29686229 AGAGTTCATTCCTAGTCTAAGATCGGACC
130 AGAGTTCATTCCCAATCTAAGATCGGACC
* *
29686258 GGACCGAGGGTTGAGGCACCAGGATCAACAGCATGCAG-GGGGGATCGGGCCGATCCCCGGCTTA
1 GGACCGAGGGTTGACGCACCAGGACCAACAGCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTA
* * * ** *
29686322 CGTATTCTGCCTC-TCCGGCCAGCTGAGCACCCGCACGCTCATTTTGTGGGTTGGCTTCGAT-AT
66 CGCATTATGCCTCTTCC-GCCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTT--ATCAT
*
29686385 ACGGAGTTCATTCCCAATCTAAGAT
128 ACAGAGTTCATTCCCAATCTAAGAT
29686410 TTTGAGCCAC
Statistics
Matches: 126, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 90 0.71
159 31 0.25
160 2 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GGACCGAGGGTTGACGCACCAGGACCAACAGCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTA
CGCATTATGCCTCTTCCGCCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTATCATACA
GAGTTCATTCCCAATCTAAGATCGGACC
Found at i:29687111 original size:26 final size:26
Alignment explanation
Indices: 29687075--29687128 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
29687065 TGGGTTGGCT
*
29687075 TAGGCGTACAGAGTTCATTC-CATGTC
1 TAGGCATACAGAGTTCATTCTCA-GTC
29687101 TAGGCATACAGAGTTCATTCTCAGTC
1 TAGGCATACAGAGTTCATTCTCAGTC
29687127 TA
1 TA
29687129 AGATTTTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCTCAGTC
Found at i:29687838 original size:26 final size:26
Alignment explanation
Indices: 29687800--29687852 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29687790 GTTGACTTAG
*
29687800 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29687826 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
29687852 G
1 G
29687853 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29688303 original size:157 final size:156
Alignment explanation
Indices: 29687826--29688325 Score: 479
Period size: 158 Copynumber: 3.2 Consensus size: 156
29687816 CCCAGTCTAA
* * ** * * *
29687826 GCATACGGAGTTCATCCCCAGTCTAAGATTGGACCAGACCGATGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCTGCAGCAGGATCGACA
* * * * * *
29687891 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTC-TCTAGCAGGCCGAGCGC
66 GCACGCA-GGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGATC-GGCTGAGCGC
* *
29687955 CCACACGTTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * *
29687984 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACTGAGGGTTG-TAGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACT-GGACTGAGGGTTGCT-GCAGCAGGATCG
* * * * * * * * * *
29688046 ACAGCACACCGAGGGGACCGGGCCGTTGTCCGGCTTGCGCATTATGCCTCTCCGGTAGGCTCAAC
63 ACAGCACGCAG-GGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
* *
29688111 GCCCGTACGCTCGTTTCATGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
29688142 GCATACGGAGTTCATTCCCAGTCTACGATGGGACTGGACTGAGGGTTGCTGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCTGCAGCAGGATCGACA
* * * * * *
29688207 GCATGTAGGGGGACCGGGCCAATCCCTGGCTTACACATTCTGCCTCTTCGATCGACTGAGCGCCC
66 GCACGCAGGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCC
*
29688272 GCACGCTCGTTTCATGGGTTGGCTTAC
130 GCACGCTCGTTTCATGGGTTGGCTTAG
29688299 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
29688326 CATACAGAGT
Statistics
Matches: 267, Mismatches: 65, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 5 0.02
157 93 0.35
158 162 0.61
159 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCTGCAGCAGGATCGACA
GCACGCAGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:29688329 original size:26 final size:26
Alignment explanation
Indices: 29688299--29688351 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29688289 GTTGGCTTAC
*
29688299 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
29688325 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
29688351 G
1 G
29688352 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:29689022 original size:159 final size:160
Alignment explanation
Indices: 29688859--29689209 Score: 399
Period size: 159 Copynumber: 2.2 Consensus size: 160
29688849 GTGAGTTGGT
* * * * *
29688859 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGAC
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGGCAGCAGGAC
* * ** * *
29688923 CGGCAGCACGCAGAGGGGGA-TCGGGTTGATCCCCGGCTTGCGCATTATGCCTCT-TCGGCCGGT
66 CGACAACACGCAG-GGGGGACT-GGGCCGATCCCCGGCTTGCGCATTATGCATCTCT-GGCCGGC
29688986 TCAGCGCCCGCACGCTCG-TTTCGTGGGTTAAC
128 TCAGCGCCCGCACGCTCGTTTTCGTGGGTTAAC
* * * * *
29689018 TTAGGCATACAGATTTCATTCCCA-GTCTAAG-ATCAGACCGGACTAAGGGTTGTGGCAGCAGGA
1 TTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGGCAGCAGGA
** * * * *
29689081 TTGACAACACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCATCTCTGGTCGGCTG
65 CCGACAACACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCATCTCTGGCCGGCTC
***
29689146 AGCGCCCGCACGCTCGTTTTCGTGGGTTGGT
130 AGCGCCCGCACGCTCGTTTTCGTGGGTTAAC
29689177 TTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCA
29689210 TACAGAGTTC
Statistics
Matches: 158, Mismatches: 27, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
158 61 0.39
159 93 0.59
160 4 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (160 bp):
TTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGGCAGCAGGAC
CGACAACACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCATCTCTGGCCGGCTCA
GCGCCCGCACGCTCGTTTTCGTGGGTTAAC
Found at i:29689217 original size:26 final size:26
Alignment explanation
Indices: 29689181--29689233 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29689171 GTTGGTTTAG
*
29689181 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29689207 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29689233 G
1 G
29689234 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29690285 original size:26 final size:26
Alignment explanation
Indices: 29690255--29690307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29690245 GTTAGCTTAG
*
29690255 GCATACAGAGTTGATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
29690281 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29690307 G
1 G
29690308 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:29690968 original size:26 final size:26
Alignment explanation
Indices: 29690920--29690972 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29690910 GTTGACTTAG
*
29690920 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
29690946 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
29690972 G
1 G
29690973 ATCGAACGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:29691239 original size:159 final size:159
Alignment explanation
Indices: 29691010--29691448 Score: 639
Period size: 159 Copynumber: 2.8 Consensus size: 159
29691000 TAGCATCAGC
* * * * * * * *
29691010 AGCACGCAG-GGGGGATAGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAACG
1 AGCACGCAGAGGGGGGTCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTGAACA
* *
29691074 CCCGCACGCCCATTTCATGCGTTGACTCAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCGCACGCCCGTTTCATGGGTTGACTCAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
29691139 GGATAGAGGGTTATGGCAGCAGGACCGAT
131 GGATAGAGGGTTATGGCAGCAGGACCGAT
* *
29691168 AGCACGCAGAGGGGGGTCGGGTCGATCTCCGGCTTGCACATTATGGCTCTCCGACCAGCTGAACA
1 AGCACGCAGAGGGGGGTCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTGAACA
29691233 CCCGCACGCCCGTTTCATGGGTTGACTCAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCGCACGCCCGTTTCATGGGTTGACTCAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
29691298 GGATAGAGGGTTATGGCAGCAGGACCGAT
131 GGATAGAGGGTTATGGCAGCAGGACCGAT
* * * * *
29691327 AACACGCAGAGGGGGGTCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGATCGGCTCAGCA
1 AGCACGCAGAGGGGGGTCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTGAACA
* ** ** * *
29691392 CCCGCATGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTGCCA-GTCTAAG
66 CCCGCACGCCCGTTTCATGGGTTGACTCAGGCATAGGGAGTTCATT-CCATGTCTAAG
29691449 ATCAGACCAG
Statistics
Matches: 253, Mismatches: 26, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
158 9 0.04
159 241 0.95
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
AGCACGCAGAGGGGGGTCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTGAACA
CCCGCACGCCCGTTTCATGGGTTGACTCAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
GGATAGAGGGTTATGGCAGCAGGACCGAT
Found at i:29692142 original size:26 final size:26
Alignment explanation
Indices: 29692106--29692175 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
29692096 GTTAGCTTAG
29692106 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
29692132 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
**
29692158 GCATACAAAGTTCATTCC
1 GCATACGGAGTTCATTCC
29692176 CAATCAAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:29692731 original size:26 final size:26
Alignment explanation
Indices: 29692702--29692751 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
29692692 GTTGACTTAG
29692702 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
29692728 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
29692752 CAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:29693246 original size:158 final size:158
Alignment explanation
Indices: 29692812--29693249 Score: 414
Period size: 158 Copynumber: 2.8 Consensus size: 158
29692802 GGGGATGGAC
* * * ** * * * *
29692812 CGATCCCTGGCTTGCGCTTTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCCCATTTCGTGGCT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACTTGAACGCTCATTTCATGGGT
* * * * * * * *
29692877 TAGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAACCCCAACGGAACTAAAGGTTGTGGCAGCG
66 TGGCTTAGGCATACA-GAGTTCATTCCATGTCTAAGCCCCAACGGATC-GAGGGTTGCGACAGCA
* *
29692941 GGACCGACAGCACGCAGAGGGGGACCGGGT
129 GGACCAACAGCACGCAGAGGGGGACCAGGT
** * * * ** *
29692971 CGATCCCCAACTTGCGTATTATGCCTCTCCGATCGGCTCAGTGCTTGAACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACTTGAACGCTCATTTCATGGGT
* * * ** * *
29693036 TGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCAAATCGGATCGAGGGTTGCGATAGCA
66 TGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAA-CGGATCGAGGGTTGCGACAGCA
* * * *
29693100 GGATCAATAGCACGTA-AGGGGGATCAGGT
129 GGACCAACAGCACGCAGAGGGGGACCAGGT
* * * *
29693129 CGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCACTTGCACGCTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACTTGAACGCTCATTTCATGGGT
* *
29693194 TGGCTTAGGCATACATAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTG
66 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCA-ACGGATCGAGGGTTG
29693250 TGGCAGCTGG
Statistics
Matches: 216, Mismatches: 58, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 107 0.50
159 98 0.45
160 8 0.04
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (158 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACTTGAACGCTCATTTCATGGGT
TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACGGATCGAGGGTTGCGACAGCAGG
ACCAACAGCACGCAGAGGGGGACCAGGT
Found at i:29693414 original size:26 final size:26
Alignment explanation
Indices: 29693385--29693437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29693375 GTTGACTTAG
29693385 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* * *
29693411 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
29693437 G
1 G
29693438 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:29694474 original size:26 final size:26
Alignment explanation
Indices: 29694437--29694489 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29694427 GTTAACTTAG
29694437 GCATACGAAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
29694463 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29694489 G
1 G
29694490 ATCAAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:29694757 original size:158 final size:160
Alignment explanation
Indices: 29694572--29694966 Score: 435
Period size: 158 Copynumber: 2.5 Consensus size: 160
29694562 TGCAATCTGC
* *
29694572 CTCTCCGACCGGCTGAGCGCCCACACGC-CTGTTTCATGGGTTGGCTTAGGCATA-GGTAGTTCA
1 CTCTCCGACCGGCTCAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGG-AGTTCA
* * * * * * **
29694635 TTCCATGTCTAAGCCCGAGTC-GGACCGAGGGTTGTGGCAGTGGGACCGGTAGCACGCAGAGGGG
64 TTCCATGTCTAAGCACGAGACTGGACCGAAGATTGTGACAGTAGGACCGACAGCACGCAGAGGGG
* *
29694699 GACCGGGTTGATCCCCAGCTTACACATTAT-T
129 AACCGGGTCGATCCCCAGCTTACACATTATAT
* * * * *
29694730 C-CTCCTGGCTGGCTCAGCGCCTGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCAT
1 CTCTCC-GACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
** * * **
29694794 TCCCA-GTCTAAG-ATTAGACTGGACTGAAGATTGTGACAGTAGGATCGACAGCACGCATTGGGG
65 T-CCATGTCTAAGCACGAGACTGGACCGAAGATTGTGACAGTAGGACCGACAGCACGCAGAGGGG
* * * *
29694857 AATCGGGTCGGTCCCCAGCTTACGCATTTTAT
129 AACCGGGTCGATCCCCAGCTTACACATTATAT
* * *
29694889 CTCTCCGACCGGCTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
1 CTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
29694954 CCATGTCTAAGCA
66 CCATGTCTAAGCA
29694967 TACGGAGTTC
Statistics
Matches: 193, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.04
158 115 0.60
159 66 0.34
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (160 bp):
CTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCACGAGACTGGACCGAAGATTGTGACAGTAGGACCGACAGCACGCAGAGGGGAA
CCGGGTCGATCCCCAGCTTACACATTATAT
Found at i:29694968 original size:26 final size:26
Alignment explanation
Indices: 29694938--29694990 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29694928 GTTGGCTTAG
29694938 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
29694964 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
29694990 G
1 G
29694991 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:29695134 original size:184 final size:185
Alignment explanation
Indices: 29694779--29695196 Score: 586
Period size: 184 Copynumber: 2.3 Consensus size: 185
29694769 GTTGACTTAG
* ** * * * *
29694779 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACTGAAGATTGTGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGTAGGATCGACA
* * * *
29694844 GCACGCATTGGGGAATCGGGTCGGTCCCCAGCTTACGCATTTTATCTCTCCGACCGGCTGAGCGC
66 GCACGCATGGGGGAATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGC
29694909 CCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
29694964 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGTAGGATCGACA
* * * * *
29695029 GCACGCA-GGGGGGATCGGGTCGATCCCCGGCTTAGGCATTCTACCTCTCCGGCTGGCTGAGCGC
66 GCACGCATGGGGGAATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGC
* * **
29695093 CCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
29695148 GCCTACGGAGTTCATTCTCATTCTAAGATCGGAACAGACCGAGGGTTGC
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAGGGTTGC
29695197 AGTACCAGGT
Statistics
Matches: 206, Mismatches: 27, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
184 143 0.69
185 63 0.31
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGTAGGATCGACA
GCACGCATGGGGGAATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGC
CCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:29695161 original size:26 final size:26
Alignment explanation
Indices: 29695125--29695174 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29695115 GGCTTAGGCA
29695125 TACGGAGTTCATTC-CATGTCTAAGCC
1 TACGGAGTTCATTCTCAT-TCTAAGCC
29695151 TACGGAGTTCATTCTCATTCTAAG
1 TACGGAGTTCATTCTCATTCTAAG
29695175 ATCGGAACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCTCATTCTAAGCC
Found at i:29695415 original size:16 final size:14
Alignment explanation
Indices: 29695314--29695424 Score: 61
Period size: 16 Copynumber: 7.6 Consensus size: 14
29695304 CTTTCTTTTG
*
29695314 TATTTTATATTTAT
1 TATTATATATTTAT
29695328 TATTAT-TA-TTAT
1 TATTATATATTTAT
*
29695340 GTATTAATATATGTAT
1 -TATT-ATATATTTAT
*
29695356 ATATTTATTTATTTAT
1 -TA-TTATATATTTAT
*
29695372 TAGATTAGAT-TTATAT
1 T--ATTATATATT-TAT
29695388 GTATT-T-TATTTAT
1 -TATTATATATTTAT
29695401 ATAGTTATATATTTAT
1 -TA-TTATATATTTAT
29695417 TATTATAT
1 TATTATAT
29695425 TATTATTTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 26
0.68 0.08 0.24
Matches are distributed among these distances:
12 4 0.05
13 12 0.16
14 17 0.23
15 11 0.15
16 27 0.36
17 4 0.05
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.61
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:29696125 original size:20 final size:20
Alignment explanation
Indices: 29696092--29696142 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
29696082 TCCGATGAAC
*
29696092 TTCCGGTGAAATTTTCCAGA
1 TTCCGATGAAATTTTCCAGA
*
29696112 TTCCGATGACATTTTCCAGA
1 TTCCGATGAAATTTTCCAGA
* *
29696132 ATCCGACGAAA
1 TTCCGATGAAA
29696143 ATCCCACCGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (20 bp):
TTCCGATGAAATTTTCCAGA
Found at i:29696575 original size:6 final size:6
Alignment explanation
Indices: 29696554--29696624 Score: 56
Period size: 6 Copynumber: 11.5 Consensus size: 6
29696544 TTTAATATTC
* * *
29696554 TTTTTA TCTTTA -TTTTA TTTTTA TTTTTG TTTTACTT TTTTTA TTTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT--TA TTTTTA -TTTTTA
*
29696604 TTTTTC TTTATT- TTTTTA TTT
1 TTTTTA TTT-TTA TTTTTA TTT
29696625 ATTCTATTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.11
6 34 0.64
7 8 0.15
8 5 0.09
ACGTcount: A:0.13, C:0.04, G:0.01, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:29696601 original size:21 final size:20
Alignment explanation
Indices: 29696554--29696627 Score: 64
Period size: 17 Copynumber: 3.7 Consensus size: 20
29696544 TTTAATATTC
*
29696554 TTTTTATCTTTATTTTA---
1 TTTTTATTTTTATTTTACTT
*
29696571 TTTTTATTTTTGTTTTACTT
1 TTTTTATTTTTATTTTACTT
*
29696591 TTTTTATTTTTTATTTTTCTT
1 TTTTTA-TTTTTATTTTACTT
*
29696612 TATTTTTTTATTTATT
1 T-TTTTATT-TTTATT
29696628 CTATTTTCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
17 15 0.33
20 6 0.13
21 15 0.33
22 10 0.22
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.81
Consensus pattern (20 bp):
TTTTTATTTTTATTTTACTT
Found at i:29696632 original size:17 final size:17
Alignment explanation
Indices: 29696566--29696639 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 17
29696556 TTTATCTTTA
*
29696566 TTTTATTTTTATT-TTT
1 TTTTATTTTTCTTATTT
29696582 GTTTTACTTTTT-TTA-TT
1 -TTTTA-TTTTTCTTATTT
29696599 TTTTATTTTTCTTTATTT
1 TTTTATTTTTC-TTATTT
29696617 TTTTATTTATTC-TATTT
1 TTTTATTT-TTCTTATTT
29696634 TCTTTA
1 T-TTTA
29696640 AATAAAAATC
Statistics
Matches: 50, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
15 5 0.10
16 5 0.10
17 18 0.36
18 19 0.38
19 3 0.06
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.80
Consensus pattern (17 bp):
TTTTATTTTTCTTATTT
Found at i:29696632 original size:27 final size:26
Alignment explanation
Indices: 29696556--29696639 Score: 93
Period size: 26 Copynumber: 3.2 Consensus size: 26
29696546 TAATATTCTT
*
29696556 TTTATCTTTATTTTA-TTTTTATTTTTGT
1 TTTA-CTTT-TTTTATTTTTTATTTTT-C
29696584 TTTACTTTTTTTATTTTTTATTTTTC
1 TTTACTTTTTTTATTTTTTATTTTTC
29696610 TTTA-TTTTTTTATTTATTCTA-TTTTC
1 TTTACTTTTTTTATTT-TT-TATTTTTC
29696636 TTTA
1 TTTA
29696640 AATAAAAATC
Statistics
Matches: 52, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
25 11 0.21
26 20 0.38
27 17 0.33
28 4 0.08
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.79
Consensus pattern (26 bp):
TTTACTTTTTTTATTTTTTATTTTTC
Found at i:29696800 original size:119 final size:118
Alignment explanation
Indices: 29696661--29697000 Score: 515
Period size: 119 Copynumber: 2.9 Consensus size: 118
29696651 AATTTTCCAA
29696661 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAATAAATTTAAAAAAA
1 AAAAAAAATA-TTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAATTTAAAAAAA
* *
29696726 AAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
64 AAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAAGTTCC
* **
29696782 -GAAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAA
* *
29696846 GGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTCC
66 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTCC
*
29696899 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAA
1 -AAAAAAAATATTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-AAAAAA
* *
29696964 ATAA--TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
63 AAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
29697001 CTACACAAGA
Statistics
Matches: 201, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
117 6 0.03
118 62 0.31
119 79 0.39
120 48 0.24
121 6 0.03
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.33
Consensus pattern (118 bp):
AAAAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAA
AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTCC
Found at i:29696805 original size:59 final size:59
Alignment explanation
Indices: 29696642--29697000 Score: 440
Period size: 59 Copynumber: 6.0 Consensus size: 59
29696632 TTTCTTTAAA
* * *
29696642 TAAAAATCAAATTTTCCAAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAATTTT-CAAAAAAATAGT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
* *
29696705 TAAAAAATAAA-TTTAAAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 T-AAAAATAAATTTTCAAAAAAATA-GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
29696765 TGAAAATCAAAATTTTCGAAAAAATA-TTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAATAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
**
29696824 TAAAAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAATAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * *
29696883 TGGAAATCAAAGTTCCAAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAATTTTC--AAAAAAATAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
29696944 TAAAAATAAA-TTTCAAAAAAATAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAATAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
29697001 CTACACAAGA
Statistics
Matches: 262, Mismatches: 23, Indels: 27
0.84 0.07 0.09
Matches are distributed among these distances:
57 23 0.09
58 37 0.14
59 73 0.28
60 42 0.16
61 56 0.21
62 21 0.08
63 4 0.02
64 6 0.02
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAATAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:29696862 original size:178 final size:182
Alignment explanation
Indices: 29696642--29697000 Score: 509
Period size: 178 Copynumber: 2.0 Consensus size: 182
29696632 TTTCTTTAAA
*
29696642 TAAAAATCAAATTTTCCAAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 TAAAAATCAAATTTTCCAAAAAAAAAATATTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTT-
* * *
29696707 AAAAAT-AAA-TTTAAAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
65 AAAAATCAAAGTTCAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
*
29696770 ATCAAAATTTTCGAAAAAAT-A-TTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
130 AT--AAA-TTTCAAAAAAATAATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
*** *
29696824 TAAAAAT-AAATTTT-CAAAAAAAGGGT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTG
1 TAAAAATCAAATTTTCCAAAAAAAAAATATTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTTA
* * *
29696885 GAAATCAAAGTTCCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
66 AAAATCAAAGTTCAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
*
29696950 TAAATTTCAAAAAAATAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
131 TAAATTTCAAAAAAATAATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
29697001 CTACACAAGA
Statistics
Matches: 160, Mismatches: 13, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
176 11 0.07
177 8 0.05
178 62 0.39
179 56 0.35
180 9 0.06
181 7 0.04
182 7 0.04
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (182 bp):
TAAAAATCAAATTTTCCAAAAAAAAAATATTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTTA
AAAATCAAAGTTCAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCAAAAAAATAATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:29699951 original size:26 final size:26
Alignment explanation
Indices: 29699910--29699962 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29699900 CTCATTCGAT
29699910 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
29699936 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
29699962 C
1 C
29699963 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29700963 original size:26 final size:26
Alignment explanation
Indices: 29700927--29700979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29700917 CCGGTCTGAT
*
29700927 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29700953 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29700979 C
1 C
29700980 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29702199 original size:26 final size:26
Alignment explanation
Indices: 29702170--29702220 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29702160 TGGTCTGATC
29702170 TTAGACTGGGAATGAA-CTCTGTATGG
1 TTAGACTGGGAATGAACCTC-GTATGG
*
29702196 TTAGACTGGGGATGAACCTCGTATG
1 TTAGACTGGGAATGAACCTCGTATG
29702221 CCTAATTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACCTCGTATGG
Found at i:29702554 original size:26 final size:26
Alignment explanation
Indices: 29702525--29702577 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29702515 CTGATCCAAT
*
29702525 CTTAGAC-TGGAAATGAACTCTGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
29702551 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29702577 C
1 C
29702578 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29702800 original size:353 final size:354
Alignment explanation
Indices: 29701852--29702806 Score: 782
Period size: 344 Copynumber: 2.7 Consensus size: 354
29701842 CTGGTCTAAT
** * * * *
29701852 CTTAGACTGGGAATGAA-CTCTGTATGCCTAAGTTAACCCA-AGAAACGAGCATACGGGCACTGA
1 CTTAGACTGGGAATGAACCTC-GTATGCCTAAGCCAACCCACA-AAATGAGCGTACGGGCGCTCA
* * * * * * * * *
29701915 ACCGACC-GAAGATGCATAATGCGCAAGCCAGGGATCAACTCGATCCCCCTCTGCGTGCTGTCGG
64 ATCGGCCGGAA-AGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCT-AGCATGCTGTCGA
* * ** ** * * *
29701979 T-CTCGCTGCCACAACCCTCAGTCCAACT-GGGACTTAGACATGGAATGAACTCCCTATGCCTAA
127 TCCT-GCTACCACAACCCTCGGTCCGGCTCCAG-CATAGACATGGAACGAACTCCGTATGCCTAA
* * * * ** * *
29702042 ACCAACCCATGAAATG-GACGTACGGGCGCTCAGCC-GATCAAAGAGGTAGAATACACAAGCC-A
190 GCCAACCCATGAAACGAG-CGTACGGGCGCTCAACCGGCT-GGAGAGGCAGAATGCACAAGCCGA
* * * * * *
29702104 GGGATC-GACTTAGTCCCCCCTACGTGCTGTCGAT-C--CT-C---A--TG---CCGTAACCCTC
253 -GGATCAG-CCTGGTCCCTCTTACATGCTGTCGATCCTGCTGCTGGACCTGCTACCGCAACCCTC
* ** *
29702156 AGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
316 AGTCTGATCCAATCTTAGACTGGAAATGAACTCTGTATG
* * ** ** * *
29702195 GTTAGACTGGGGATGAACCTCGTATGCCTAATTCAACCCATGAAATGAGCGTGCGGGTGCTCAAT
1 CTTAGACTGGGAATGAACCTCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAAT
* * **
29702260 CTGGCCGGAAAGGCATAATGCGCAAGCTAGGGATCAGCCCGATCCCCCTATGTGTGCTGTCGATC
66 C-GGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTA-GCATGCTGTCGATC
* * *** *
29702325 TTGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCA
129 CTGCTACCACAACCCTCGGTCCGGCTCCAGCATAGACATGGAACGAACTCCGTATGCCTAAGCCA
* * *
29702390 ACCCATGAAACGAGCGTATGGGTGCTCAACCGGCTTGAGAGGCAGAATGCACAAGCCGAGGATCA
194 ACCCATGAAACGAGCGTACGGGCGCTCAACCGGCTGGAGAGGCAGAATGCACAAGCCGAGGATCA
29702455 GCCTGGTCCCTCTTACATGCTGTCGATCCTGCTGCTGGACCTGCTACCGCAACCCTCAGTCTGAT
259 GCCTGGTCCCTCTTACATGCTGTCGATCCTGCTGCTGGACCTGCTACCGCAACCCTCAGTCTGAT
29702520 CCAATCTTAGACTGGAAATGAACTCTGTATG
324 CCAATCTTAGACTGGAAATGAACTCTGTATG
29702551 CTTAGACAT-GGAATGAA-CTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCA
1 CTTAGAC-TGGGAATGAACCT-CGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCA
* * * * ** *
29702614 GTC-GTC-GAAGAGGCAGAATGTGTAAGCCAGGGATTGGCCCGGTCCCCCCTA-CATGCTGTCGA
64 ATCGGCCGGAA-AGGCAGAATGCGCAAGCCAGGGATCAGCCCGAT-CCCCCTAGCATGCTGTCGA
* * *
29702676 TCCTGCTA-CAGCAACCCTCGGTCC-GATCCCATCATAGAC-TGGGAATGAACTCCGTATGCCTA
127 TCCTGCTACCA-CAACCCTCGGTCCGGCT-CCAGCATAGACAT-GGAACGAACTCCGTATGCCTA
* * * * * * * * *
29702738 AGTCAACCCATGAAATGAGCGTACGGGCGTTGAGCCGG-TCGGAGAGGCATAATTCGCAAGCCGG
189 AGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCT-GGAGAGGCAGAATGCACAAGCCGA
29702802 GGATC
253 GGATC
29702807 GACCCGGTCC
Statistics
Matches: 493, Mismatches: 88, Indels: 52
0.78 0.14 0.08
Matches are distributed among these distances:
343 49 0.10
344 172 0.35
345 13 0.03
347 2 0.00
348 1 0.00
351 1 0.00
352 6 0.01
353 114 0.23
354 28 0.06
355 9 0.02
356 97 0.20
357 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (354 bp):
CTTAGACTGGGAATGAACCTCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAAT
CGGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTAGCATGCTGTCGATCCT
GCTACCACAACCCTCGGTCCGGCTCCAGCATAGACATGGAACGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTACGGGCGCTCAACCGGCTGGAGAGGCAGAATGCACAAGCCGAGGATCAGC
CTGGTCCCTCTTACATGCTGTCGATCCTGCTGCTGGACCTGCTACCGCAACCCTCAGTCTGATCC
AATCTTAGACTGGAAATGAACTCTGTATG
Found at i:29702831 original size:353 final size:353
Alignment explanation
Indices: 29702149--29702843 Score: 746
Period size: 353 Copynumber: 2.0 Consensus size: 353
29702139 CTCATGCCGT
* ** * * *
29702149 AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGACTGGGGATGAACC
1 AACCCTCAGTCTGATCCAATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGAATGAACC
** ** * * *
29702214 TCGTATGCCTAATTCAACCCATGAAATGAGCGTGCGGGTGCTCAATCTGGCCGGAAAGGCATAAT
66 TCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAATC-GGCCGGAAAGGCAGAAT
* ** * *
29702279 GCGCAAGCTAGGGATCAGCCCGATCCCCCTATGTGTGCTGTCGATCTTGCTACCACAACCCTTGG
130 GCGCAAGCCAGGGATCAGCCCGATCCCCCTA-GCATGCTGTCGATCCTGCTACCACAACCCTCGG
*** * *
29702344 TCCGGCTGGGGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAT
194 TCCGGCTCCAGCATAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAC
* * * *
29702409 GGGTGCTCAACCGGCTTGAGAGGCAGAATGCACAAGCCGAGGATCAGCCTGGTCCCTCTTACATG
259 GGGCGCTCAACCGGCTGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCTCGTA-ATG
*
29702474 CTGTCGATCCTGCTGCTGGACCTGCTACCGC
323 CTGTCGATCCCGCTGCTGGACCTGCTACCGC
29702505 AACCCTCAGTCTGATCCAATCTTAGACTGGAAATGAACTCTGTATGCTTAGACAT-GGAATGAA-
1 AACCCTCAGTCTGATCCAATCTTAGACTGGAAATGAACTCTGTATGCTTAGAC-TGGGAATGAAC
* *
29702568 CTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAGTC-GTC-GAAGAGGCAGA
65 CT-CGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAATCGGCCGGAA-AGGCAGA
* * ** *
29702631 ATGTGTAAGCCAGGGATTGGCCCGGTCCCCCCTA-CATGCTGTCGATCCTGCTA-CAGCAACCCT
128 ATGCGCAAGCCAGGGATCAGCCCGAT-CCCCCTAGCATGCTGTCGATCCTGCTACCA-CAACCCT
* * * * *
29702694 CGGTCC-GATCCCATCATAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
191 CGGTCCGGCT-CCAGCATAGACAT-GGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
* * * * * * *
29702757 CGTACGGGCGTTGAGCCGG-TCGGAGAGGCATAATTCGCAAGCCGGGGATC-GACCCGGTCCCCT
254 CGTACGGGCGCTCAACCGGCT-GGAGAGGCAGAATGCACAAGCCGAGGATCAG-CCCGGT-CCCT
* *
29702820 CGGT-GTGCTGTCGGTCCCGCTGCT
316 C-GTAATGCTGTCGATCCCGCTGCT
29702844 ACAACCCTCA
Statistics
Matches: 279, Mismatches: 49, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
352 7 0.03
353 134 0.48
354 33 0.12
355 10 0.04
356 94 0.34
357 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (353 bp):
AACCCTCAGTCTGATCCAATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGAATGAACC
TCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAATCGGCCGGAAAGGCAGAATG
CGCAAGCCAGGGATCAGCCCGATCCCCCTAGCATGCTGTCGATCCTGCTACCACAACCCTCGGTC
CGGCTCCAGCATAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGG
GCGCTCAACCGGCTGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCTCGTAATGCTG
TCGATCCCGCTGCTGGACCTGCTACCGC
Found at i:29702872 original size:158 final size:157
Alignment explanation
Indices: 29702550--29703050 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 157
29702540 AACTCTGTAT
**
29702550 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * * * * ***
29702615 TC-GTCGAAGAGGCAGAATGT-GTAAGCCAGGGATTGGCCCGGTCCCCCCTACATGCTGTCGATC
66 CCGGTCGGAGAGGCAGAAT-TCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATC
* *
29702678 CTGCTACAGCAACCCTCGGTCC-GATCCCA
130 CTGCTGCA-CAACCCTCGGTCCGGAT-CGA
* * * * *
29702707 TCATAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCA
* * * *
29702771 GCCGGTCGGAGAGGCATAATTCGCAAGCCGGGGATCGACCCGGTCCCCTCGGTGTGCTGTCGGTC
65 GCCGGTCGGAGAGGCAGAATTCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATC
* * * * *
29702836 CCGCTGCTACAACCCTCAGTCCGGCTGGG
130 CTGCTGC-ACAACCCTCGGTCCGGATCGA
* * * **
29702865 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * *
29702930 CCGG-CTGGAGAGGTAGAATGCACAAGCCGGGGATC-AGCCCGGTCCCCCCTGTGTGCTGTCAAT
66 CCGGTC-GGAGAGGCAGAATTCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGTGTGCTGTCGAT
* *
29702993 CCTGCTGCCACAGCCCTCGGTCTGGATCGA
129 CCTGCTG-CACAACCCTCGGTCCGGATCGA
*
29703023 TCTTAGAC-TGGAGATGAACTCCGTATGC
1 GCTTAGACATGGA-ATGAACTCCGTATGC
29703051 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 54, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 64 0.23
158 210 0.75
159 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
CCGGTCGGAGAGGCAGAATTCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCC
TGCTGCACAACCCTCGGTCCGGATCGA
Found at i:29703064 original size:26 final size:26
Alignment explanation
Indices: 29703024--29703076 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29703014 CTGGATCGAT
29703024 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
*
29703050 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
29703076 C
1 C
29703077 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:29703800 original size:26 final size:26
Alignment explanation
Indices: 29703749--29703800 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29703739 GGCTCAAAAT
**
29703749 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCCTATG
29703775 CTTAGACATG-GAATGAACTCCCTATG
1 CTTAGAC-TGAGAATGAACTCCCTATG
29703801 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCCTATG
Found at i:29703984 original size:26 final size:26
Alignment explanation
Indices: 29703933--29703985 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29703923 CCGATCCGAT
*
29703933 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
29703959 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
29703985 C
1 C
29703986 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29704770 original size:11 final size:11
Alignment explanation
Indices: 29704756--29704781 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
29704746 GCTCTCCGGT
29704756 GATGCTCCGAC
1 GATGCTCCGAC
29704767 GATGCTCCGAC
1 GATGCTCCGAC
29704778 GATG
1 GATG
29704782 GTGCCTCGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:29705218 original size:158 final size:159
Alignment explanation
Indices: 29704851--29705299 Score: 403
Period size: 159 Copynumber: 2.8 Consensus size: 159
29704841 GGCTCAAAAT
* * * ** * *
29704851 CTTAGATTGGGAATGAACTCCGTATACCGAAGCCAACCCACGAAATGAGCGTGCGG-G-TCTCAG
1 CTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGAGCGCTCAG
** * * * * * *
29704914 -CTGGCCGGAGAGGCAGAATACGTAAGCCG-GAGATCGGCTCGATCCCCCCTGCATGCTGTTGAT
66 TCCAG-CGGAGAGGCAGAATGCGCAAGCCGAG-GATCGACCCGATCCCCCCTACATGCTGTCGAT
* * **** * * * **
29704977 CTTGGTGCCTCAACCTTCGGTCC-GATCCGAT
129 CCTGCTATGACAACCCTCGGTCCAGCT-GGGG
* *
29705008 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGG-GCGCTGAG
1 CTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGAGCGCTCAG
* * *
29705072 -CCAGCGGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCTCTCTACATGCTGTCGGT
66 TCCAGCGG-AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCC-CCCTACATGCTGTCGAT
29705136 CCTGCTATGACAACCCTCGGTCCAGCTGGGG
129 CCTGCTATGACAACCCTCGGTCCAGCTGGGG
* * * *
29705167 CTTAGACAT-GGAATGAACTCTG-ATGCCTAAGCCAACCCATGAAACGGGCGTGCGGAGGGCTCA
1 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGAGCGCTCA
* * * * ** *
29705230 GTCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTTGATCCCCCCTACGTGCTGTCGATC
65 GTCCAGCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGTCGATC
29705295 CTGCT
130 CTGCT
29705300 GCTGGTCTTG
Statistics
Matches: 237, Mismatches: 47, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 53 0.22
158 86 0.36
159 90 0.38
160 8 0.03
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGAGCGCTCAG
TCCAGCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGTCGATCC
TGCTATGACAACCCTCGGTCCAGCTGGGG
Found at i:29705378 original size:26 final size:26
Alignment explanation
Indices: 29705337--29705389 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29705327 CCAATCCAAT
29705337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29705363 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29705389 C
1 C
29705390 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29705550 original size:26 final size:26
Alignment explanation
Indices: 29705521--29705573 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29705511 CCGATCTGAT
29705521 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
29705547 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
29705573 C
1 C
29705574 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:29705631 original size:184 final size:184
Alignment explanation
Indices: 29705302--29705731 Score: 556
Period size: 184 Copynumber: 2.3 Consensus size: 184
29705292 ATCCTGCTGC
* * ** *
29705302 TGGTCTTGCTACCGCAAACCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
1 TGGTCTTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTA
* * * * ** *
29705367 GACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTCAGTCGGC
66 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGTCGAC
* * * * *
29705432 CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTT-GGTCCCCCCTGTATACTGT
131 CAGAGAGGAAGAATGCGCAAGCCAGGGACCGG-TTCGGTCCCCCCTGCATACTAT
*
29705486 TGGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTA
1 TGGTCTTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTA
* *
29705551 GACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGTCGAT
66 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGTCGAC
* * * * * *
29705616 CGGAGAGGAAGAATGCGTAAGTCAGGGACCGGTTCGGTCCCCCTTGCGTGCTAT
131 CAGAGAGGAAGAATGCGCAAGCCAGGGACCGGTTCGGTCCCCCCTGCATACTAT
* * * * **
29705670 CGATCTTGTTGCCGCAACCCTCGGTTTGATCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 TGGTCTTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGC
29705732 CTAAGTCAAC
Statistics
Matches: 212, Mismatches: 33, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
183 2 0.01
184 210 0.99
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
TGGTCTTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGTCGAC
CAGAGAGGAAGAATGCGCAAGCCAGGGACCGGTTCGGTCCCCCCTGCATACTAT
Found at i:29705815 original size:158 final size:158
Alignment explanation
Indices: 29705547--29706040 Score: 534
Period size: 158 Copynumber: 3.1 Consensus size: 158
29705537 ACTCTGTATG
* *
29705547 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGT
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGT
* * * ** * *
29705612 CGATCGGAGAGGAAGAATGCGTAAGTC-AGGGACCGGTTCGGTCCCCCTTGCGTGCTATCGATCT
66 CGATCGGAGAGGCAGAATGCGCAAGTCGA-GGATCGGCCCGATCCCCCTTGCGTGCTATCGATCC
* *
29705676 TGTTGCCGCAACCCTCGGTTTGATCTGAT
130 TGCTGCCGCAACCCTCGGTCTGATCTGAT
* * *
29705705 CTTAGAC-TGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGA
1 CTTAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * * * *
29705768 G-CCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGG
64 GTCGA-TCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCT-TGCGTGCTATCGA
* * * **
29705832 TCCCGCTGCCACAACCCTTC-ATCTGA-CTGGGG
127 TCCTGCTGCCGCAACCC-TCGGTCTGATCT-GAT
** * * * *
29705864 CTTAGACATTAAATGAACTTCCTATGCCTAAGCCAACCCACGGAACGGGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGT
* * * *
29705929 CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCCT
* *
29705994 GCTGCCGCAACCCTCGGTCTCATCTAAT
131 GCTGCCGCAACCCTCGGTCTGATCTGAT
29706022 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
29706041 CCATATGCTT
Statistics
Matches: 270, Mismatches: 53, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
157 8 0.03
158 134 0.50
159 121 0.45
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGT
CGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCCT
GCTGCCGCAACCCTCGGTCTGATCTGAT
Found at i:29706058 original size:26 final size:26
Alignment explanation
Indices: 29706022--29706074 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29706012 CTCATCTAAT
*
29706022 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
29706048 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
29706074 C
1 C
29706075 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:29706794 original size:26 final size:26
Alignment explanation
Indices: 29706756--29706808 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29706746 GGCTCAAACT
29706756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29706782 CTTAGACAT-GGAATGAACTGCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29706808 C
1 C
29706809 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29707454 original size:196 final size:196
Alignment explanation
Indices: 29707096--29707455 Score: 416
Period size: 196 Copynumber: 1.8 Consensus size: 196
29707086 GATCTGGTTA
* * * * *
29707096 GATCTTAGATTGGGAATAAACTTCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATAAACTCCATATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGACAA
** * * *
29707161 CCCACGAAACGAGCGTCCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCGA
66 CCCACGAAACGAGCAACCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * *
29707226 CCCAATCCCCGCTGCATGCTGTCAATCCTGCTACTGGTCCTACTACCGTATCCCTCGTTTTGATC
131 CCCAATCCCCCCTACATGCTGTCAACCCTGCTACTGGTCCTACTACCGTATCCCTCGTTTTGATC
29707291 T
196 T
* * * *
29707292 GATCTTATACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATAAACTTCGTATGCCTAAGACA
1 GATCTTAGACTGGGAATAAACTCCATATGCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGACA
* * * * * ** *
29707356 ACCCATGAAACGAGCAAGCGGGCGCTTAGCCGGCTGGAGAGGCAGAATGCGCAAGTTGGGGATGG
65 ACCCACGAAACGAGCAACCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
*** ** * *
29707421 GGTCGGTCCCCCCTACGTGTTGTCAACCCTGCTAC
130 ACCCAATCCCCCCTACATGCTGTCAACCCTGCTAC
29707456 CACAACCCTC
Statistics
Matches: 131, Mismatches: 32, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
196 130 0.99
197 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (196 bp):
GATCTTAGACTGGGAATAAACTCCATATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGACAA
CCCACGAAACGAGCAACCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
CCCAATCCCCCCTACATGCTGTCAACCCTGCTACTGGTCCTACTACCGTATCCCTCGTTTTGATC
T
Found at i:29708555 original size:26 final size:26
Alignment explanation
Indices: 29708517--29708569 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29708507 GGCTCAAACT
29708517 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29708543 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29708569 C
1 C
29708570 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29708875 original size:26 final size:26
Alignment explanation
Indices: 29708839--29708891 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29708829 CCAGTTTTAT
29708839 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
29708865 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29708891 C
1 C
29708892 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29709821 original size:26 final size:26
Alignment explanation
Indices: 29709792--29709844 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29709782 CTGATTCAAT
*
29709792 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29709818 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29709844 C
1 C
29709845 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29710187 original size:158 final size:157
Alignment explanation
Indices: 29709817--29710319 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 157
29709807 AACTCTGTAT
* *
29709817 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCAG
* * * * * * * * *
29709882 CCGGCCAAAGAGGCAGAATGTGCAAGCCGGGGA-CCAGCCCGATCCCCCTTTACGTGCTGTTGAT
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-TCCGAT-CCCCTCTACATGCTATCGAT
* * **
29709946 CCTGCTATCGTAACCCTCGATCCTATCTGA
128 CCCGCTACCACAACCCTCGATCCTATCTGA
* * ** * *
29709976 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTTAACCCACAAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCA
* * *
29710040 GCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGATCTGATCCCCTCTACATGCTATCGGTC
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGATCCCCTCTACATGCTATCGATC
* *
29710105 CCGCTGCCACAACCCTCGAT-CTGA-CTGGG
129 CCGCTACCACAACCCTCGATCCT-ATCT-GA
* * * * *
29710134 GCTTACACATGGAATGAACTCCTTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAG
** * * * ** *
29710199 CCAATCGGAGAGGCAGAATGCGTAAGTCGGGGATCG-TCCCGATCCCCTCCGCGTGCTATCGATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGAT-CCGATCCCCTCTACATGCTATCGATC
** * * * * * *
29710263 TTGCTGCCGCAACCCTTGGTCCGATCCGA
129 CCGCTACCACAACCCTCGATCCTATCTGA
* *
29710292 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29710320 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 61, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 175 0.64
159 89 0.33
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGATCCCCTCTACATGCTATCGATCCC
GCTACCACAACCCTCGATCCTATCTGA
Found at i:29710767 original size:16 final size:16
Alignment explanation
Indices: 29710746--29710776 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
29710736 ACTTTAATTG
29710746 CTATAAAATCTCAAAC
1 CTATAAAATCTCAAAC
29710762 CTATAAAATCTCAAA
1 CTATAAAATCTCAAA
29710777 TGCTCTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (16 bp):
CTATAAAATCTCAAAC
Found at i:29711053 original size:26 final size:26
Alignment explanation
Indices: 29711016--29711066 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29711006 GCTCAAACTT
*
29711016 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
29711042 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
29711067 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:29711608 original size:25 final size:26
Alignment explanation
Indices: 29711567--29711621 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 26
29711557 CCGGTCTGAT
*
29711567 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
29711593 CTTAGAC-ATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29711618 CTTA
1 CTTA
29711622 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 20 0.74
26 7 0.26
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29712078 original size:158 final size:155
Alignment explanation
Indices: 29711593--29712094 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 155
29711583 ACTCTGTATG
* * * * *
29711593 CTTAGACATGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGTGAGCACCCAGCC
1 CTTAGACAGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
* * * * * *
29711658 GACTGGAGAGGCAAAATGCGCAAGCCAGGGA-CCGACCTGGTCCCCCTTGCGTACTGTCGATCCT
66 GACCGGAGAGGCAAAATGCGTAAGCCGGGGATCAG-CCCGGTCCCCC-TGCGTGCTGTCGATCCT
* * *
29711722 ACTGTTGCAACCCTCGGTCCGATCCGAT
129 GCTGTCGCAACCCTC-GTCCGATCTGAT
* ** * * *
29711750 CTTAGACTAGGAATGAACTCCCTAT-CTTAAGTCAACCCACAAAACGAGCGTTCGGGCACTGAGT
1 CTTAGAC-AGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * ** * * *
29711814 CGACCAGAGAGACATAATGCGTAGGGCGGGGATTGGCCCGATCCCCCTCTACGTGCTGCCGATCG
65 CGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGCCCGGT-CCCC-CTGCGTGCTGTCGATC-
* * **
29711879 C-GCTGCCACAACCCTCGATCCGA-CTGGG
127 CTGCTGTCGCAACCCTCG-TCCGATCTGAT
* *
29711907 CTTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACA-GGAATGAACTCCCTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * *
29711972 CGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCTT
65 CGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGCCCGGTCCC-CCTGCGTGCTGTCGATCCT
* * *
29712037 GCTATCGTAACCCTCTGTCCTATCTGAT
129 GCTGTCGCAACCCTC-GTCCGATCTGAT
*
29712065 CTTAGACTAGGAATGAACTCCATATGCTTA
1 CTTAGAC-AGGAATGAACTCCCTATGCTTA
29712095 GACTGGGGAT
Statistics
Matches: 270, Mismatches: 62, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 122 0.45
158 144 0.53
159 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (155 bp):
CTTAGACAGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
GACCGGAGAGGCAAAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCCTGC
TGTCGCAACCCTCGTCCGATCTGAT
Found at i:29712460 original size:26 final size:26
Alignment explanation
Indices: 29712431--29712483 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29712421 CAGGTCCGAT
29712431 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
29712457 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29712483 C
1 C
29712484 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29712882 original size:159 final size:158
Alignment explanation
Indices: 29712456--29712958 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 158
29712446 AACTCCGTAT
* * * *
29712456 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAATGAGCGTACGGGCACCCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACAGGCACTCAG
* * * * * **
29712521 CCAGCCGGAGAGACAGAATGCGCAAGCAGGGGACCGACCCGGTCCCCCCTACGTACTGTCGATCC
66 TCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTACTACCGATCC
*
29712586 TGCTACCGCAACCCTCAGTCCGGTCTGA
131 TGCTACCACAACCCTCAGTCCGGTCTGA
* * ** * * * *
29712614 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCGACCCACGGAATGAGCGTTCATGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACAGGCACTCA
* * * * * ** *** ** *
29712678 GTCGGTCGGAGAGACATAATGCACAAGCCAGGGATTAGCCCGATCCTTTTCTGTGTACTACCGGT
65 GTCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCGATCC-CCCCTACGTACTACCGAT
* * * *
29712743 CGTGCTGCCACAACCCT-TGATCCGG-CTGGG
129 CCTGCTACCACAACCCTCAG-TCCGGTCT-GA
* * *
29712773 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGGGCGTACAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACAGGCACTCAG
* * * * * ** * *
29712838 TCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTTCTGTCAATCT
66 TCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTACTACCGATCC
* * * *
29712903 TGCTACCGCAACCCTCTGTCTGATCTGA
131 TGCTACCACAACCCTCAGTCCGGTCTGA
* *
29712931 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29712959 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 75, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
157 2 0.01
158 138 0.53
159 121 0.46
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACAGGCACTCAG
TCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTACTACCGATCC
TGCTACCACAACCCTCAGTCCGGTCTGA
Found at i:29712961 original size:26 final size:26
Alignment explanation
Indices: 29712932--29712984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29712922 CTGATCTGAT
*
29712932 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29712958 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29712984 C
1 C
29712985 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29713520 original size:26 final size:26
Alignment explanation
Indices: 29713484--29713536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29713474 CTGGTTCGAT
* *
29713484 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
29713510 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
29713536 C
1 C
29713537 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:29713869 original size:26 final size:26
Alignment explanation
Indices: 29713827--29713909 Score: 107
Period size: 26 Copynumber: 3.2 Consensus size: 26
29713817 CTGGTCTGAT
*
29713827 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
29713853 CTTAAACTAGGG-TTGAACTCCGTATG
1 CTTAAACT-GGGAATGAACTCCGTATG
* *
29713879 CTT-AGCTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
29713904 CTTAAA
1 CTTAAA
29713910 TCAACCCACG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
24 3 0.06
25 18 0.38
26 24 0.50
27 3 0.06
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:29714010 original size:368 final size:369
Alignment explanation
Indices: 29713496--29714250 Score: 966
Period size: 368 Copynumber: 2.0 Consensus size: 369
29713486 TAGATTGGGA
* *
29713496 ATGAACTCCGTATGCTTAGACTGGGGATGAACACCGTATGCCTAAGTCAACCCACGAAATGAGCA
1 ATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAATCAACCCACGAAATGAGCA
* * * *
29713561 TTTCGACACTGAGCCGACAGGAGAGGCATAATCCGTAAGCTGAGGATCGGCCCGGTCCCCCTTTG
66 GTTCGACACTGAGCCGACAGGAGAGGCATAATCCGCAAGCAGAGGATCGGCCCGGTCCCCCTCTG
* *
29713626 CATGCTACCAGTCCCGCTGTCACAACCCT-TGGTCTGGCTGGGGCTTAGACATGGAATGAACTCC
131 CATGCTACCAGTCCCGCTGCCACAACCCTCT-GTCTGACTGGGGCTTAGACATGGAATGAACTCC
** * * *
29713690 CTACGCCTAAGCCAACCCATGAAATAGGCGTACGGGTGCTCA-ATCGGCCAGAAAAGAAGAATCC
195 CTACGCCTAAGCCAACCCACAAAACAGGCGTACGGGCGCTCAGCT-GGCCAGAAAAGAAGAATCC
** * * * * *
29713754 GTAAGCCGGGGATCAGCCTGGTCCCCTCTGTGTGC-AGTCGATCCTACTATCGCAACCCTCGGTC
259 ACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTA-TCGATCCTACTACCGCAACCCTCGATC
* * * *
29713818 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGG
323 CGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTAAACTAGGG
* ** *
29713865 TTGAACTCCGTATGCTTAG-CTGGGAATGAACTTCGTATGCTTAAATCAACCCACGAAATGAGC-
1 ATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAATCAACCCACGAAATGAGCA
* * * *
29713928 GTTCGGGA-ACTGGGCCTACCGGAGAGGCATAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCT
66 GTTC--GACACTGAGCCGACAGGAGAGGCATAATCCGCAAG-CAGAGGATCGGCCCGGTCCCCCT
* *
29713991 CTGCGTGCTACCGGTCCCGCTGCCACAACCCTCTGTCTGACTGGGGCTTAGACATGGAATGAACT
128 CTGCATGCTACCAGTCCCGCTGCCACAACCCTCTGTCTGACTGGGGCTTAGACATGGAATGAACT
* * * * * * * * *
29714056 CCCTATGCCTCAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATG
193 CCCTACGCCTAAGCCAACCCACAAAACAGGCGTACGGGCGCTCAGCTGGCCAGAAAAGAAGAATC
* *
29714121 CACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATC
258 CACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCGATC
* * *
29714186 CGATCTGATCTTAGACTAGGAATGAACTTCATATGCTTAGACTGGGG
323 CGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTAAACTAGGG
*
29714233 ATGAACACCGTATGCTTA
1 ATGAACTCCGTATGCTTA
29714251 AGTCAACCGA
Statistics
Matches: 330, Mismatches: 50, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
367 3 0.01
368 302 0.92
369 25 0.08
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (369 bp):
ATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAATCAACCCACGAAATGAGCA
GTTCGACACTGAGCCGACAGGAGAGGCATAATCCGCAAGCAGAGGATCGGCCCGGTCCCCCTCTG
CATGCTACCAGTCCCGCTGCCACAACCCTCTGTCTGACTGGGGCTTAGACATGGAATGAACTCCC
TACGCCTAAGCCAACCCACAAAACAGGCGTACGGGCGCTCAGCTGGCCAGAAAAGAAGAATCCAC
AAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCGATCCGA
TCTGATCTTAGACTAGGAATGAACTCCATATGCTTAAACTAGGG
Found at i:29714772 original size:26 final size:26
Alignment explanation
Indices: 29714734--29714786 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29714724 CCGGTCCGAT
*
29714734 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29714760 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29714786 C
1 C
29714787 CTAAGCCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29714969 original size:196 final size:197
Alignment explanation
Indices: 29714634--29715140 Score: 643
Period size: 196 Copynumber: 2.6 Consensus size: 197
29714624 AGGCCTACCA
* * * * * * *
29714634 GAGAGGCATAATGCACAAGTCGGGGATCAACCCGGTCCCCTTCTACGTGCTGTTGATCCCGCTG-
1 GAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCC-CCTGCGTGCTGTCGATCCTGCTGC
* * * * *
29714698 TCGGTCTTTCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTT
65 TCAGTCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
29714763 AGACATGGAATGAACTCCGTATGCCTAAGCCCACCCACGAAACGAGGGTGCGGGCGCTCAGCCGG
130 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGG
29714828 TCG
195 TCG
29714831 GAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCT
1 GAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCT
* * *
29714896 -AGTCCTGCTCCCGCAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
66 CAGTCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
*
29714960 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGTT
131 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGT
29715025 CG
196 CG
* * *
29715027 GAGAGGCAGAATG-AGCAAG-CTGGGGATCGACCCAATCCCCCCTGCATGCTGTC-A--AT-CT-
1 GAGAGGCAGAATGCA-CAAGTC-GGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTG
* *
29715085 -T--G--CTG---CCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
64 CTCAGTCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
29715141 CTAAGTCAAC
Statistics
Matches: 280, Mismatches: 27, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
184 47 0.17
187 3 0.01
189 1 0.00
190 1 0.00
192 2 0.01
193 1 0.00
195 3 0.01
196 184 0.66
197 38 0.14
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (197 bp):
GAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCT
CAGTCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGT
CG
Found at i:29715303 original size:159 final size:158
Alignment explanation
Indices: 29714958--29715455 Score: 439
Period size: 158 Copynumber: 3.1 Consensus size: 158
29714948 TCCGTATGCT
*
29714958 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCG
* ** *
29715023 TTCGGAGAGGCAGAATGAGCAAGCTGGGGATCGACCCAATCCCCCCTGCATGCTGTCAATCTTGC
66 GTCGGAGAGGCAGAATGAGCAAGCTGGGGATCGACCCAATCCCCCCTGCATGCTACCAATCCTGC
* * * *
29715088 TGCCACAACCCTCGGTCTGGTCCGATCT
131 TGCCACAACCATCGGTCCGGTCCGAGCA
* * ** * *
29715116 TAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCAGGCGTTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACC
* * * ** *
29715180 GGTCGGAGAGGCATAATGCA-CAAG-TCGGGGATCGACCCGATCCTCCTCTGTGTGCTACCGATC
65 GGTCGGAGAGGCAGAATG-AGCAAGCT-GGGGATCGACCCAATCC-CCCCTGCATGCTACCAATC
* *
29715243 CTGCTGCCACAACCATCGGTCCGG-CTGGGGCA
127 CTGCTGCCACAACCATCGGTCCGGTC-CGAGCA
* * * * ** * * **
29715275 TAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGCACGCGGGCGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCG
* * * * * * * * * *
29715340 GTCGGAGTGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTACGTGCTATCGATCCTGC
66 GTCGGAGAGGCAGAATGAGCAAGCTGGGGATCGACCCAATCCCCCCTGCATGCTACCAATCCTGC
* ** * ** * *
29715405 TGTCGTAACCCTCGGTCCAATCCGATCT
131 TGCCACAACCATCGGTCCGGTCCGAGCA
*
29715433 TAGAC-TAGGAATGAACTTCGTAT
1 TAGACAT-GGAATGAACTCCGTAT
29715456 TCTTAGATTA
Statistics
Matches: 272, Mismatches: 58, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 146 0.54
159 122 0.45
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCG
GTCGGAGAGGCAGAATGAGCAAGCTGGGGATCGACCCAATCCCCCCTGCATGCTACCAATCCTGC
TGCCACAACCATCGGTCCGGTCCGAGCA
Found at i:29715467 original size:26 final size:26
Alignment explanation
Indices: 29715430--29715481 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29715420 TCCAATCCGA
*
29715430 TCTTAGACTAGGAATGAACTTCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
* *
29715456 TCTTAGATTAGGGATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
29715482 GCCTAAGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:29715668 original size:26 final size:25
Alignment explanation
Indices: 29715627--29715678 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
29715617 CCGGTCCGAT
29715627 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
29715652 CTTAGACATTGAATGAACTCCATATG
1 CTTAGAC-TGGAATGAACTCCATATG
29715678 C
1 C
29715679 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:29715735 original size:195 final size:195
Alignment explanation
Indices: 29715402--29715756 Score: 457
Period size: 195 Copynumber: 1.8 Consensus size: 195
29715392 CTATCGATCC
* * * *
29715402 TGCTGTCGTAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTTCGTATTCTTAGATTAG
1 TGCTGTCGTAACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGATTA-
* * ** * *
29715467 GGATGAACTCCGTATGCCTAAGTTAACCCAAGAAACAAGTGTACGAGCGTTCACCCGATCAGAGA
65 GAATGAACTCCATATGCCTAAGCCAACCCAAGAAACAAGCGTACGAGCGTTCACCCGACCAGAGA
*
29715532 GGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCTAACGTGCTGCCGATCCTGCTACTGGTC
130 GGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCTAACGTGCTGCCGATCCTGCTACTGGTC
29715597 T
195 T
**
29715598 TGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCCATATGCTTAGACATT
1 TGCTGTCGTAACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAG--ATT
* * * ** *
29715662 -GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGC-AG-GTGCTCAGTCGACCGG
64 AGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACAAGCGTACGAGCGT--TCACCCGACCAG
*
29715724 AGTGGCAGAATGCGTAAGCCGAGGATCGACCCA
127 AGAGGCAGAATGCGTAAGCCGAGGATCGACCCA
29715757 ACCTCACCTG
Statistics
Matches: 135, Mismatches: 20, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
193 2 0.01
194 2 0.01
195 94 0.70
196 34 0.25
197 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (195 bp):
TGCTGTCGTAACCCTCGATCCAATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGATTAG
AATGAACTCCATATGCCTAAGCCAACCCAAGAAACAAGCGTACGAGCGTTCACCCGACCAGAGAG
GCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCTAACGTGCTGCCGATCCTGCTACTGGTCT
Found at i:29716152 original size:158 final size:155
Alignment explanation
Indices: 29715662--29716144 Score: 458
Period size: 158 Copynumber: 3.1 Consensus size: 155
29715652 CTTAGACATT
* *
29715662 GAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-GAGCGTGCAGGTGCTCAGTCGACCGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTGC-GGCGCTCAGTCG-CCGGAG
* * * * * * * * *
29715726 TGGCAGAATGCGTAAGCCGAGGATCGAC-CCAACCTCACCTGCATGCTGTTGATCCTACTATCGC
63 AGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCC-C-CCTGCGTGCTGTCGATCCTGCTACCGC
* *
29715790 AACCC-TCGATCCAGTCTGATCTTAGACTGG
126 AACCCTTAGA-CCGGTCTGATCTTAGACTGG
* ** * * *
29715820 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTTCGGCGCTGAGTCGGTCGGAGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGCGCTCAGTC-GCCGGAGAG
* * * * **
29715885 GCATAATGGGCAAGCC-AGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGA-CCCGCTGCCAT
65 GCAGAATGCGCAAGCCGA-GGATCGGCTCGAT-CCCC-CTGCGTGCTGTC-GATCCTGCTACCGC
* * ** *
29715948 AACCCTCAGTCCGG-CTGGGGCTTCGACAT-G
126 AACCCTTAGACCGGTCT-GATCTTAGAC-TGG
* * * *
29715978 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCAGCCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGC-GGCGCTCAGTC-GCCGGAGA
29716043 GGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCATGCGTGCTGTCGATCCTGCTACCGCAA
64 GGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCC-TGCGTGCTGTCGATCCTGCTACCGCAA
*
29716108 CCCTTGGACCGGTCTGATCTTAGACTGG
128 CCCTTAGACCGGTCTGATCTTAGACTGG
29716136 GAATGAACT
1 GAATGAACT
29716145 TTGTATGCTT
Statistics
Matches: 256, Mismatches: 53, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 42 0.16
158 161 0.63
159 51 0.20
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (155 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGCGCTCAGTCGCCGGAGAGG
CAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCC
TTAGACCGGTCTGATCTTAGACTGG
Found at i:29716162 original size:26 final size:26
Alignment explanation
Indices: 29716126--29716178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29716116 CCGGTCTGAT
* *
29716126 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
29716152 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
29716178 C
1 C
29716179 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:29716245 original size:695 final size:695
Alignment explanation
Indices: 29714707--29716250 Score: 1963
Period size: 695 Copynumber: 2.2 Consensus size: 695
29714697 GTCGGTCTTT
* *
29714707 CTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGA
1 CTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGG
* * * * * * *
29714772 ATGAACTCCGTATGCCTAAGCCCACCCACGAAACGAGGGTGCGGGCGCTCAGCCGGTCGGAGAGG
65 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGACGCTCAGCCGATC-AAGAGG
* * * * *
29714837 CAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTAGTCCT
129 CAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTACTAGTCCT
* *
29714902 GCTCCCGCAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGG
194 GCTCCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGG
* * **
29714967 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGTTCGGAGAG
259 AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCGGAGAG
* * * * * *
29715032 GCAGAATGAGCAAGCTGGGGATCGACCCAATCCCCCCTGCATGCTGTCAATCTTGCTGCCACAAC
324 GCAGAATGAGCAAGCCGAGGATCGACCCAATCCCACCTGCATGCTGTCAATCCTACTACCACAAC
* ** *
29715097 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
389 CCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
* * * * *
29715162 GCTTGCAGGCGTTGAGCCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCGACCCGATCCTCCT
454 ACTTGCAGGCGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCT
* * *
29715227 CTGTGTGCTACCGATCCTGCTGCCACAACCATCGGTCCGGCTGGGGCATAGACATGGAATGAACT
519 CTGCGTGCTACCGATCCCGCTGCCACAACCATCAGTCCGGCTGGGGCATAGACATGGAATGAACT
* * * * * * *
29715292 CCCTATCCCTAAGCCAACCCATGAAACGGGCACGCGGGCGCTCAGTCGGTCGGAGTGGCAGAATG
584 CCCTATCCCTAAGCCAACCCACGAAACAGGCACGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATG
*
29715357 CGCAAGCCGAGGATCGGCCCAGTCCCCCCTACGTGCTATCGATCCTG
649 CGCAAGCCGAGGATCGGCCCAGTCCCCCATACGTGCTATCGATCCTG
** * ** * * *
29715404 CTGTCGTAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTTCGTATTCTTAGATTAGGG
1 CTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT-GGG
* * * * * *
29715469 ATGAACTCCGTATGCCTAAGTTAACCCA-AGAAACAAGTGTAC-GAGCGTTCACCCGATCAGAGA
65 ATGAACTCCGTATGCCTAAGTCAACCCACA-AAACGAGCGTGCGGA-CGCTCAGCCGATCA-AGA
* *
29715532 GGCAGAATGCGTAAGCCGGGGATCGACCCAGT-CCCCCTAACGTGCTGCCGATCCTGCTACTGGT
127 GGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCT-ACGTGCTGCCGATCCTGCTACTAGT
* ** *
29715596 CTTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCCATATGCTTAGACA
191 CCTGCTCCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACA
* ** **
29715660 TTGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGTCGACCGGA
256 TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCGGA
* * * ** * *
29715725 GTGGCAGAATGCGTAAGCCGAGGATCGACCCAA-CCTCACCTGCATGCTGTTGATCCTACTATCG
321 GAGGCAGAATGAGCAAGCCGAGGATCGACCCAATCC-CACCTGCATGCTGTCAATCCTACTACCA
*
29715789 CAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
385 CAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* ** * *
29715854 ACAAACGTT-C-GGCGCTGAGTCGGTCGGAGAGGCATAATGGGCAAGCCAGGGATCGGCTCGATC
450 ACAAAC-TTGCAGGCGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATC
* * * * * *
29715917 CCCCTCTGCGTGCTGTCGGA-CCCGCTGCCATAACCCTCAGTCCGGCTGGGGCTTCGACATGGAA
514 CCCCTCTGCGTGCT-ACCGATCCCGCTGCCACAACCATCAGTCCGGCTGGGGCATAGACATGGAA
* *
29715981 TGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCAGCCAGAGAGGC
578 TGAACTCCCTATCCCTAAGCCAACCCACGAAACAGGCACGCGGGCGCTCAGCCAGCCAGAGAGGC
* * *
29716046 AGAATGCGCAAGCCGAGGATCGGCTC-GATCCCCCATGCGTGCTGTCGATCCTG
643 AGAATGCGCAAGCCGAGGATCGGCCCAG-TCCCCCATACGTGCTATCGATCCTG
* * * *
29716099 CTACCGCAACCCTTGGACCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGG
1 CTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT-GGG
* * * *
29716164 ATAAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGACGCTCAGCTGACCTAAGAGG
65 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGACGCTCAGCCGATC-AAGAGG
* *
29716229 TAGGATGCGCAAGCCGGGGATC
129 CAGAATGCGCAAGCCGGGGATC
29716251 AAACGGGTGG
Statistics
Matches: 715, Mismatches: 120, Indels: 26
0.83 0.14 0.03
Matches are distributed among these distances:
694 1 0.00
695 319 0.45
696 209 0.29
697 186 0.26
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (695 bp):
CTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGA
TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGACGCTCAGCCGATCAAGAGGCA
GAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTACTAGTCCTGC
TCCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAA
TGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCGGAGAGGC
AGAATGAGCAAGCCGAGGATCGACCCAATCCCACCTGCATGCTGTCAATCCTACTACCACAACCC
TCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAAC
TTGCAGGCGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCT
GCGTGCTACCGATCCCGCTGCCACAACCATCAGTCCGGCTGGGGCATAGACATGGAATGAACTCC
CTATCCCTAAGCCAACCCACGAAACAGGCACGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCG
CAAGCCGAGGATCGGCCCAGTCCCCCATACGTGCTATCGATCCTG
Found at i:29717217 original size:158 final size:158
Alignment explanation
Indices: 29716874--29717209 Score: 374
Period size: 158 Copynumber: 2.1 Consensus size: 158
29716864 AACTCCATAT
**
29716874 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
* * * *
29716939 CCAGTCGGAGAGGCAGAGTGCGAAGCCTGGGATCAACCTGATCCCCCTCTACGTTCTGTCAGTCT
66 CCAGTCGGAGAGGCAGAATGCGAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCAGTCT
* * * ***
29717004 CGCTGCCATAACCCTCAGTCTGGCTGGG
131 CACTGCCAGAACCCTCAGTCCGGCTCAA
* * * *
29717032 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
** * *
29717097 CTGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCGATCCCCC-CTGCGTGCTGTC-GAT
66 CCAGTCGGAGAGGCAGAATGCG-AAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCAG-T
** ** *
29717160 C-CTACTGCTGGAACCCTTGGTCCGGTTCAA
129 CTC-ACTGCCAGAACCCTCAGTCCGGCTCAA
*
29717190 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
29717210 TTGTATGCTT
Statistics
Matches: 148, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
157 3 0.02
158 123 0.83
159 22 0.15
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
CCAGTCGGAGAGGCAGAATGCGAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCAGTCT
CACTGCCAGAACCCTCAGTCCGGCTCAA
Found at i:29717241 original size:26 final size:26
Alignment explanation
Indices: 29717191--29717243 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29717181 CCGGTTCAAT
**
29717191 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29717217 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29717243 C
1 C
29717244 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29717439 original size:26 final size:26
Alignment explanation
Indices: 29717402--29717453 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29717392 TGGTCTGATT
29717402 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
29717428 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
29717454 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:29717768 original size:26 final size:26
Alignment explanation
Indices: 29717732--29717784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29717722 CTGATTCGAT
29717732 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* * *
29717758 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
29717784 C
1 C
29717785 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:29718472 original size:26 final size:26
Alignment explanation
Indices: 29718443--29718493 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
29718433 GGTCTGATCT
29718443 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
29718469 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
29718494 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:29719347 original size:26 final size:26
Alignment explanation
Indices: 29719296--29719348 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29719286 CTGGTCTGAT
*
29719296 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29719322 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29719348 C
1 C
29719349 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29720537 original size:93 final size:93
Alignment explanation
Indices: 29720371--29720548 Score: 232
Period size: 93 Copynumber: 1.9 Consensus size: 93
29720361 GATCTTAGAC
* * * *
29720371 TGGGAATGAGCTCCATATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCACGAAAC
1 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAAC
*
29720436 AAGCGTGCGGGCGCTCAGCCGGTCGGAT
66 AAGCGTGCGGGCACTCAGCCGGTCGGAT
* * *
29720464 TGGGAATGAACTTCATATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAA
1 TGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAA
** * *
29720528 TGAGTGTGCGGGTACTCAGCC
65 CAAGCGTGCGGGCACTCAGCC
29720549 TGCCAAAGAG
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (93 bp):
TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAAC
AAGCGTGCGGGCACTCAGCCGGTCGGAT
Found at i:29720999 original size:157 final size:158
Alignment explanation
Indices: 29720801--29721158 Score: 416
Period size: 157 Copynumber: 2.3 Consensus size: 158
29720791 TCAGCTGGGG
* * * * *
29720801 CATAGA-TATGGAATGAACTACCTACGCCTAAGCCAACCCACGAAACGGGCTTACGGGCGCTCAG
1 CATAGACTA-GGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ** * * *** *
29720865 TCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAG-CCCAGTCCC-CCTGGGTGCTATCGATC
65 CCGACCAGAGAGGCAAAATGCGCAAGCCAAGGA-CAGACCCAGTCCCTCCTGCGTGCTATCGATC
* * *
29720928 CTGTTGCCGCAACCCTCAATCCGATCTGAT
129 CTGCTGCAGCAACCCTCAATCCGATCTAAT
* * *
29720958 CATAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGC
1 CATAGACTAGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
29721023 CGACCAGAGAGGTAAAATGCGCAAGCCAAGGACCGACCCGGTCCCTCCTGCGTGCTGTCGATCCT
66 CGACCAGAGAGGCAAAATGCGCAAGCCAAGGACAGACCCAGTCCCTCCTGCGTGCTATCGATCCT
*
29721088 GCTGCAGCAACCCTCGATCCGATCTAAT
131 GCTGCAGCAACCCTCAATCCGATCTAAT
* * * *
29721116 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGA
1 CATAGACTAGGAATGAACTACGTATGCCTAAGTCAACCCACGA
29721159 CACTAGCATT
Statistics
Matches: 169, Mismatches: 29, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
156 2 0.01
157 85 0.50
158 82 0.49
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.18
Consensus pattern (158 bp):
CATAGACTAGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCAGAGAGGCAAAATGCGCAAGCCAAGGACAGACCCAGTCCCTCCTGCGTGCTATCGATCCT
GCTGCAGCAACCCTCAATCCGATCTAAT
Found at i:29721443 original size:163 final size:161
Alignment explanation
Indices: 29720483--29721444 Score: 571
Period size: 158 Copynumber: 6.0 Consensus size: 161
29720473 ACTTCATATG
* * * * * **
29720483 CTTAGAC-ATGGAATGAACTCTGTATGCCT-AAGCCAACCCACAAAATGAGTG-TGCGGGTACTC
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAAGCCAACCCACGAAACGAGCGTTACGGGCGCTC
* * ** * * * *
29720545 AGCCTGCCAAAGAGGTAGAATGTGCAAGTCGGGGA-CTGGCCCAGTCCCCCCCTGCGTGCTG-TC
65 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCAGT-CCCCCCTGCGTGCTGCTC
* * * ** * *
29720608 GATCCTGCTGTCGTAACCCTCGGTCCGGT-TCGTT
128 GATCCTACTGCCGCAACCCTCAATCCGATCT-GAT
* * ** * * * * *
29720642 CTTAGATTGGGAATGAACTCTATATGCC-AAAGTCAACCAACGAAACTAGCGTT-CAGGCGCTGA
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAAGCCAACCCACGAAACGAGCGTTACGGGCGCTCA
* * * * ** *
29720705 GCCGGTCGGAGAGGCAAAATGCGTAAGCCAGGGATCGACCCGGTCCCCTTTTGTGTGCTGC-C-A
66 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCC-CCTGCGTGCTGCTCGA
* * ** * * **
29720768 GT-CTCGCTGCCACAACCCTCGGTTC-AGCTGGGG
130 -TCCT-ACTGCCGCAACCCTCAATCCGATCT-GAT
* * *
29720801 CATAGA-TATGGAATGAACTACC-TACGCCT-AAGCCAACCCACGAAACGGGC-TTACGGGCGCT
1 CTTAGACTA-GGAATGAACT-CCGTATGCCTAAAGCCAACCCACGAAACGAGCGTTACGGGCGCT
* * * *
29720862 CAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATC-AGCCCAGT-CCCCCTGGGTGCT-ATC
64 CAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCAGTCCCCCCTGCGTGCTGCTC
**
29720924 GATCCTGTTGCCGCAACCCTCAATCCGATCTGAT
128 GATCCTACTGCCGCAACCCTCAATCCGATCTGAT
* * * * *
29720958 CATAGACTAGGAATGAACTTCGTATGCCT-AAGTCAACCCACGAAATGAGCG-TACGGGTGCTCA
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAAGCCAACCCACGAAACGAGCGTTACGGGCGCTCA
** * * * ** * * *
29721021 GCCGACCAGAGAGGTAAAATGCGCAAGCCAAGGACCGACCCGGTCCCTCCTGCGTGCTG-TCGAT
66 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCTCGAT
* * * *
29721085 CCTGCTGCAGCAACCCTCGATCCGATCTAAT
131 CCTACTGCCGCAACCCTCAATCCGATCTGAT
* * * * * * *
29721116 CTTAGACTGGGAATGAACTCCGTATGCC-AAAGTCAACCCACGACACTAGCATT-CGGGCGTTGA
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAAGCCAACCCACGAAACGAGCGTTACGGGCGCTCA
* * ** * * * * *
29721179 GCCGGTCGGAGAGCCATAATGCATAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTACT--T
66 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCC-CTGCGTGCTGCTCGA
* * * * **
29721242 TCCCACTGCCACAACCCTCAGTCCG-GCTGGGG
130 TCCTACTGCCGCAACCCTCAATCCGATCT-GAT
* * * * *
29721274 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAAGCCAACCCATGAAACGGGCGTGA-GGGT
1 CTTAGACTA-GGAATGAACTCCGTATGCCT-A---AAGCCAACCCACGAAACGAGCGTTACGGGC
* * *
29721337 GCTCAGCCAGTTGGAGAGGGAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGC
61 GCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGC
* ** * *
29721402 T-GATCCTACTGCCGCAACACTCGGTCCGGTCCGAT
126 TCGATCCTACTGCCGCAACCCTCAATCCGATCTGAT
29721437 CTTAGACT
1 CTTAGACT
29721445 GATAATAAAC
Statistics
Matches: 608, Mismatches: 156, Indels: 73
0.73 0.19 0.09
Matches are distributed among these distances:
156 1 0.00
157 109 0.18
158 195 0.32
159 195 0.32
160 5 0.01
162 11 0.02
163 91 0.15
164 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (161 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAAGCCAACCCACGAAACGAGCGTTACGGGCGCTCA
GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCTCGAT
CCTACTGCCGCAACCCTCAATCCGATCTGAT
Found at i:29721593 original size:184 final size:184
Alignment explanation
Indices: 29721349--29721710 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 184
29721339 TCAGCCAGTT
* * *
29721349 GGAGAGGGAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCTGATCCTACTGC
1 GGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCTGATCCTACTAC
* *
29721414 CGCAACACTCGGTCCGGTCCGATCTTAGACT-GATAATAAACTCCATATGCTTAGACTGGGGAAG
66 CACAACACTCAGTCCGGTCCGATCTTAGACTGGAT-ATAAACTCCATATGCTTAGACTGGGGAAG
* ** * *
29721478 AACTCCGTATGCCTAAGTCAGCCCATGAAATGAGCATGCGGGCGCTCAGTCGGTC
130 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGACGCTCAGTCGGTC
* * **
29721533 GGAGAGGCAGAATGTACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTG-TCGATCCTACTA
1 GGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCT-GATCCTACTA
** * * * * * *
29721597 CCACAATGCTCAGTCTGGTCTGATCTTAGACTGGGTATGAACTCCGTATGCTTAGACTGGGGATG
65 CCACAACACTCAGTCCGGTCCGATCTTAGACTGGATATAAACTCCATATGCTTAGACTGGGGAAG
*
29721662 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGACGCTCAG
130 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGACGCTCAG
29721711 CCGACTATAG
Statistics
Matches: 153, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.01
184 150 0.98
185 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (184 bp):
GGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCTGATCCTACTAC
CACAACACTCAGTCCGGTCCGATCTTAGACTGGATATAAACTCCATATGCTTAGACTGGGGAAGA
ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGACGCTCAGTCGGTC
Found at i:29721657 original size:26 final size:26
Alignment explanation
Indices: 29721621--29721673 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29721611 CTGGTCTGAT
*
29721621 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29721647 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29721673 C
1 C
29721674 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29722687 original size:26 final size:26
Alignment explanation
Indices: 29722658--29722710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29722648 CTGATCCAAT
*
29722658 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGCATG
29722684 CTTAGACATGGAATGAACTCTGCATG
1 CTTAGACATGGAATGAACTCTGCATG
29722710 C
1 C
29722711 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGCATG
Found at i:29722967 original size:21 final size:21
Alignment explanation
Indices: 29722941--29722986 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
29722931 TGATCGGCCT
* *
29722941 GGTCCCCTTCTACATGCTGTC
1 GGTCCCCCTCTACATGCTGCC
*
29722962 GGTCCCCCTCTGCATGCTGCC
1 GGTCCCCCTCTACATGCTGCC
29722983 GGTC
1 GGTC
29722987 TCGTTGCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.07, C:0.41, G:0.24, T:0.28
Consensus pattern (21 bp):
GGTCCCCCTCTACATGCTGCC
Found at i:29723284 original size:12 final size:12
Alignment explanation
Indices: 29723263--29723302 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
29723253 CTCTGTGTGG
*
29723263 TGCCGATCCCAT
1 TGCCGATCCCAC
*
29723275 TGCCGGTCCCAC
1 TGCCGATCCCAC
*
29723287 TGCCGATCCTAC
1 TGCCGATCCCAC
29723299 TGCC
1 TGCC
29723303 ACAACCCTCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.12, C:0.45, G:0.20, T:0.23
Consensus pattern (12 bp):
TGCCGATCCCAC
Found at i:29723670 original size:26 final size:26
Alignment explanation
Indices: 29723641--29723693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29723631 CCGATTCGAT
29723641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29723667 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29723693 C
1 C
29723694 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29724391 original size:26 final size:26
Alignment explanation
Indices: 29724352--29724402 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29724342 GGTCTGATCT
29724352 TAGACTGGGAATGAACTTT-GTATGCA
1 TAGACTGGGAATGAA-TTTCGTATGCA
*
29724378 TAGACTGGGGATGAATTTCGTATGC
1 TAGACTGGGAATGAATTTCGTATGC
29724403 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAATTTCGTATGCA
Found at i:29724756 original size:26 final size:26
Alignment explanation
Indices: 29724718--29724770 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29724708 CTGATCTGAT
29724718 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29724744 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29724770 C
1 C
29724771 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29725269 original size:26 final size:26
Alignment explanation
Indices: 29725218--29725270 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29725208 CCGGTCTGAT
*
29725218 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29725244 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
29725270 C
1 C
29725271 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29726455 original size:93 final size:93
Alignment explanation
Indices: 29726292--29726469 Score: 268
Period size: 93 Copynumber: 1.9 Consensus size: 93
29726282 GATCTTAGAC
* * *
29726292 TGGGAATGAGCTCCATATGCTTAGACTGGGGATGAACCCCGTATACCTAAGTCAACCCACGAAAC
1 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACCCCGTATACCTAAGCCAACCCACGAAAC
29726357 AAGCGTGCGGGCACTCAGCCGGTCGAAT
66 AAGCGTGCGGGCACTCAGCCGGTCGAAT
* *
29726385 TGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
1 TGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACCCCGTATACCTAAGCCAACCCACGAAA
* **
29726449 CGAGCGTGCGGGTGCTCAGCC
65 CAAGCGTGCGGGCACTCAGCC
29726470 TACCAAAGAG
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
93 75 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.19
Consensus pattern (93 bp):
TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACCCCGTATACCTAAGCCAACCCACGAAAC
AAGCGTGCGGGCACTCAGCCGGTCGAAT
Found at i:29727052 original size:316 final size:317
Alignment explanation
Indices: 29726403--29727079 Score: 785
Period size: 316 Copynumber: 2.1 Consensus size: 317
29726393 AACTCCATAT
*
29726403 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACTATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * *
29726467 GCCTACCAAAGAGGTAGAATGTGCAAGCCGGGGAATGGCCCAGTCCCCCCTGCGTGCTGTCGATC
65 GCCGACCAAAGAGGCAGAATGCGCAAGCCGGGGAATGGCCCAGTCCCCCCTGCGTGCTATCGATC
* * * * * *
29726532 CTGCTGTTGCAACCTTCGGTCCGGTCCATTCTTAGATTGGGAATGAACTCCATATGCCTAAGTCA
130 CTGCTGCTGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* * * * * * * *
29726597 ACCCACGAAATGAGCGTTCAGGTACTGAGCCGGTCGGAGAGGCAAAATGCGTAAGCCAGGGATCG
195 ACCCACGAAACGAGCGTACAGGTACTCAGCCGGCCAGAGAGGCAAAATGCGCAAGCCAAGGACCG
* * * ** * * * * *
29726662 ACCCAGTCCCCTTCTGTGTGCTGTCGGTCTCGCTCCCACAGCCCTCGGTTCGACTGGG
260 ACCCAGTCCCCTCCTGCGTACTGTCAATCTCGCTACCACAACCCTCGATCCGACTGGA
* * *
29726720 GCATAGA-TATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGTGCTCA
1 GCTTAGACTATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* ** ** * *
29726784 GTCGGTCGGAGAGGCAGAATGCGTAAGCTGGGG-ATCGGCCCAGT-CCCCCTGCGTGCTATCGAT
65 GCCGACCAAAGAGGCAGAATGCGCAAGCCGGGGAAT-GGCCCAGTCCCCCCTGCGTGCTATCGAT
* * *
29726847 CCTGTTGCTGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
129 CCTGCTGCTGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
* * *
29726912 AACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGAGGTAAAATGCGCAAGCCAAGGACC
194 AACCCACGAAACGAGCGTACAGGTACTCAGCCGGCCAGAGAGGCAAAATGCGCAAGCCAAGGACC
29726977 GACCC-GAT-CCCTCCTGCGTACTGTCAATC-CTGCTACCACAACCCTCGATCCGATCT-GA
259 GACCCAG-TCCCCTCCTGCGTACTGTCAATCTC-GCTACCACAACCCTCGATCCGA-CTGGA
* * * * *
29727035 TCTTAGACTAGGGAATGAACTTCATATGCCAAAGTCAACCCACGA
1 GCTTAGACTATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGA
29727080 CATGAGCATT
Statistics
Matches: 301, Mismatches: 51, Indels: 17
0.82 0.14 0.05
Matches are distributed among these distances:
314 1 0.00
315 41 0.14
316 169 0.56
317 88 0.29
318 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (317 bp):
GCTTAGACTATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCGACCAAAGAGGCAGAATGCGCAAGCCGGGGAATGGCCCAGTCCCCCCTGCGTGCTATCGATCC
TGCTGCTGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAACGAGCGTACAGGTACTCAGCCGGCCAGAGAGGCAAAATGCGCAAGCCAAGGACCGA
CCCAGTCCCCTCCTGCGTACTGTCAATCTCGCTACCACAACCCTCGATCCGACTGGA
Found at i:29727112 original size:316 final size:317
Alignment explanation
Indices: 29726413--29727313 Score: 782
Period size: 316 Copynumber: 2.8 Consensus size: 317
29726403 GCTTAGACAT
* * * * * * **
29726413 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCTA-CCAAA
1 GGAATGAACTACATATGCCAAAGCCAACCCACGAAACGAGCTTACGGGCGCTCAGCC-AGCCGGA
* * * * *
29726477 GAGGTAGAATGTGCAAGCCGGGGAAT-GGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGTTG
65 GAGGCAGAATGCGTAAGCCGGGG-ATCGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGCTGCTG
* * * * *
29726541 CAACCTTCGGTCCGGTCCATTCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
129 CAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
* * * * * * * *
29726606 ATGAGCGTTCAGGTACTGAGCCGGTCGGAGAGGCAAAATGCGTAAGCCAGGGATCGACCCAGTCC
194 ACGAGCGTACAGGTACTCAGCCGGCCAGAGAGGCAAAATGCGCAAGCCAAGGACCGACCCAGTCC
* * * ** * * * * * *
29726671 CCTTCTGTGTGCTGTCGGTCTCGCTCCCACAGCCCTCGGTTCGACTGGGGCATAGATAT
259 CCTCCTGCGTACTGTCAATCTCGCTACCACAACCCTCGATCCGACTGGAGCATAGATAG
* * * * * * *
29726730 GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGTGCTCAGTCGGTCGGAG
1 GGAATGAACTACATATGCCAAAGCCAACCCACGAAACGAGCTTACGGGCGCTCAGCCAGCCGGAG
* *
29726795 AGGCAGAATGCGTAAGCTGGGGATCGGCCCAGT-CCCCCTGCGTGCTATCGATCCTGTTGCTGCA
66 AGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGCA
* *
29726859 ACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
131 ACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC
* * *
29726924 GAGCGTACGGGTGCTCAGCCGGCCAGAGAGGTAAAATGCGCAAGCCAAGGACCGACCC-GAT-CC
196 GAGCGTACAGGTACTCAGCCGGCCAGAGAGGCAAAATGCGCAAGCCAAGGACCGACCCAG-TCCC
* *
29726987 CTCCTGCGTACTGTCAATC-CTGCTACCACAACCCTCGATCCGATCT-GATCTTAGACTAG
260 CTCCTGCGTACTGTCAATCTC-GCTACCACAACCCTCGATCCGA-CTGGAGCATAGA-TAG
* * * * * *
29727046 GGAATGAACTTCATATGCCAAAGTCAACCCACGACATGAGCATT-CGGGCGTTGAGCCAGCCGGA
1 GGAATGAACTACATATGCCAAAGCCAACCCACGAAACGAGC-TTACGGGCGCTCAGCCAGCCGGA
* * * * * * * * ** *
29727110 GAGCCATAATGCATAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCT-GCCAGTCCCACTGCC
65 GAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCC-CTGCGTGCTATCGA-TCCTGCTGCT
* * ***** * * *
29727174 ACAACCCTCAATCCGA-CTGGGGGTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAT
128 GCAACCCTCAGTCCGATC-CAATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCAC
* * * * * *** * * * * *
29727237 GAAACGGGCGTGCGGGTGCTCAGCCAGTTGGAGAGGCAGAATGCGCAAGCCGAGCATCGACCCGG
191 GAAACGAGCGTACAGGTACTCAGCCGGCCAGAGAGGCAAAATGCGCAAGCCAAGGACCGACCCAG
29727302 TCCCC-CCTGCGT
256 TCCCCTCCTGCGT
29727314 GCTGCTGATC
Statistics
Matches: 474, Mismatches: 96, Indels: 27
0.79 0.16 0.05
Matches are distributed among these distances:
314 1 0.00
315 41 0.09
316 215 0.45
317 89 0.19
318 123 0.26
319 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GGAATGAACTACATATGCCAAAGCCAACCCACGAAACGAGCTTACGGGCGCTCAGCCAGCCGGAG
AGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGCA
ACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC
GAGCGTACAGGTACTCAGCCGGCCAGAGAGGCAAAATGCGCAAGCCAAGGACCGACCCAGTCCCC
TCCTGCGTACTGTCAATCTCGCTACCACAACCCTCGATCCGACTGGAGCATAGATAG
Found at i:29727262 original size:159 final size:158
Alignment explanation
Indices: 29726403--29727317 Score: 646
Period size: 159 Copynumber: 5.8 Consensus size: 158
29726393 AACTCCATAT
* * *
29726403 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAG
*** ** * * * * * *
29726468 CCTACCAAAGAGGTAGAATGTGCAAGCCGGGGAAT-GGCCCAGTCCCCCCTGCGTGCTGTC-GAT
66 CCGGTCGGAGAGGCAAAATGCGTAAGCCGGGG-ATCGACCCGGTCCCCCCTGCGTGCTGTCAG-T
* *** * ** * **
29726531 CCTGCTGTTGCAACCTTCGGTCCG-GTCCA
129 CCCGCTGCCACAACCCTCAATCCGACTGGA
* * * * * * *
29726560 TTCTTAGA-TTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGTACTG
1 -GCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTC
* * * * *
29726624 AGCCGGTCGGAGAGGCAAAATGCGTAAGCCAGGGATCGACCCAGTCCCCTTCTGTGTGCTGTCGG
64 AGCCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGGTCCCC-CCTGCGTGCTGTCAG
* * * ** * *
29726689 TCTCGCTCCCACAGCCCTCGGTTCGACTGGG
128 TCCCGCTGCCACAACCCTCAATCCGACTGGA
* * * * *
29726720 GCATAGATATGGAATGAACTACC-TATGCCTAAGCCAACCCACGAAACGGGCTTACGGGTGCTCA
1 GCTTAGACATGGAATGAACT-CCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * * * *
29726784 GTCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCAGT-CCCCCTGCGTGCTATC-GAT
65 GCCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAG-T
* * ** * * **
29726847 CCTGTTGCTGCAACCCTCAGTCTGA-TCCAA
129 CCCGCTGCCACAACCCTCAATCCGACT-GGA
* *
29726877 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * * ** * * * * *
29726941 GCCGGCCAGAGAGGTAAAATGCGCAAGCCAAGGACCGACCCGATCCCTCCTGCGTACTGTCAATC
65 GCCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAGTC
* * *
29727006 CTGCTACCACAACCCTCGATCCGATCT-GA
130 CCGCTGCCACAACCCTCAATCCGA-CTGGA
* * * * * * * * * * *
29727035 TCTTAGACTAGGGAATGAACTTCATATGCCAAAGTCAACCCACGACATGAGCATTCGGGCGTTGA
1 GCTTAGAC-ATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * * * * *
29727100 GCCAGCCGGAGAGCCATAATGCATAAGCCGGGGATC-AGCTCGGTCCCCCTCTGCGTGCTGCCAG
65 GCCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGA-CCCGGTCCCCC-CTGCGTGCTGTCAG
* *
29727164 TCCCACTGCCACAACCCTCAATCCGACTGGG
128 TCCCGCTGCCACAACCCTCAATCCGACTGGA
* * * * * *
29727195 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * * *
29727260 CCAGTTGGAGAGGCAGAATGCGCAAGCCGAGCATCGACCCGGTCCCCCCTGCGTGCTG
66 CCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTG
29727318 CTGATCCTAC
Statistics
Matches: 581, Mismatches: 155, Indels: 42
0.75 0.20 0.05
Matches are distributed among these distances:
156 5 0.01
157 113 0.19
158 142 0.24
159 274 0.47
160 47 0.08
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAGTCC
CGCTGCCACAACCCTCAATCCGACTGGA
Done.