Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 319 of 402
Found at i:29727307 original size:475 final size:475
Alignment explanation
Indices: 29726404--29727316 Score: 1143
Period size: 475 Copynumber: 1.9 Consensus size: 475
29726394 ACTCCATATG
*
29726404 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * * ** * * * *
29726469 CTACCAAAGAGGTAGAATGTGCAAGCCGGGGAATGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
66 CGACCAAAGAGGTAAAATGCGCAAGCCAAGGAACGACCCAGTCCCCCCTGCGTACTGTCAATCCT
**** * * * * *
29726534 GCTGTTGCAACCTTCGGTCCGGTCCATTCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAAC
131 GCTACCACAACCCTCGATCCGATCCATTCTTAGATAGGGAATGAACTCCATATGCCAAAGTCAAC
* * * * * *
29726599 CCACGAAATGAGCGTTCAGGTACTGAGCCGGTCGGAGAGGCAAAATGCGTAAGCCAGGGATCGAC
196 CCACGAAATGAGCATTCAGGCACTGAGCCAGCCGGAGAGCCAAAATGCATAAGCCAGGGATCGAC
* * * * * * * ** * *
29726664 CCAGTCCCCTTCTGTGTGCTGTCGGTCTCGCTCCCACAGCCCTCGGTTCGACTGGGGCATAGATA
261 CCAGTCCCCCTCTGCGTGCTGCCAGTCCCACTCCCACAACCCTCAATCCGACTGGGGCATAGACA
* * *
29726729 TGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGTGCTCAGTCGGTCGGA
326 TGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCCAGTCGGA
* * * * *
29726794 GAGGCAGAATGCGTAAGCTGGGGATCGGCCCAGT-CCCCCTGCGTGCTATCGATCCTGTTGCTGC
391 GAGGCAGAATGCGCAAGCCGAGCATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTGTTGCTGC
29726858 AACCCTCAGTCTGATCCAAT
456 AACCCTCAGTCTGATCCAAT
*
29726878 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * *
29726942 CCGGCCAGAGAGGTAAAATGCGCAAGCCAAGGACCGACCC-GATCCCTCCTGCGTACTGTCAATC
65 CCGACCAAAGAGGTAAAATGCGCAAGCCAAGGAACGACCCAG-TCCCCCCTGCGTACTGTCAATC
* *
29727006 CTGCTACCACAACCCTCGATCCGATCTGA-TCTTAGACTAGGGAATGAACTTCATATGCCAAAGT
129 CTGCTACCACAACCCTCGATCCGATC-CATTCTTAGA-TAGGGAATGAACTCCATATGCCAAAGT
* * ** * *
29727070 CAACCCACGACATGAGCATTCGGGCGTTGAGCCAGCCGGAGAGCCATAATGCATAAGCCGGGGAT
192 CAACCCACGAAATGAGCATTCAGGCACTGAGCCAGCCGGAGAGCCAAAATGCATAAGCCAGGGAT
* * * **
29727135 C-AGCTCGGTCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCAATCCGACTGGGGGTT
257 CGA-CCCAGTCCCCCTCTGCGTGCTGCCAGTCCCACTCCCACAACCCTCAATCCGACTGGGGCAT
* * *
29727199 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCAG
321 AGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCCAG
* *
29727264 TTGGAGAGGCAGAATGCGCAAGCCGAGCATCGACCCGGTCCCCCCTGCGTGCT
386 TCGGAGAGGCAGAATGCGCAAGCCGAGCATCGACCCAGTCCCCCCTGCGTGCT
29727317 GCTGATCCTA
Statistics
Matches: 366, Mismatches: 67, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
473 2 0.01
474 136 0.37
475 215 0.59
476 13 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (475 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
CGACCAAAGAGGTAAAATGCGCAAGCCAAGGAACGACCCAGTCCCCCCTGCGTACTGTCAATCCT
GCTACCACAACCCTCGATCCGATCCATTCTTAGATAGGGAATGAACTCCATATGCCAAAGTCAAC
CCACGAAATGAGCATTCAGGCACTGAGCCAGCCGGAGAGCCAAAATGCATAAGCCAGGGATCGAC
CCAGTCCCCCTCTGCGTGCTGCCAGTCCCACTCCCACAACCCTCAATCCGACTGGGGCATAGACA
TGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCCAGTCGGA
GAGGCAGAATGCGCAAGCCGAGCATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTGTTGCTGC
AACCCTCAGTCTGATCCAAT
Found at i:29727536 original size:184 final size:184
Alignment explanation
Indices: 29727208--29727630 Score: 544
Period size: 184 Copynumber: 2.3 Consensus size: 184
29727198 TAGACATGGA
* * * * * **
29727208 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCAGTTGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
* *
29727273 CAGAATGCGCAAGCCGAGCATCGACCCGGTCCCCCCTGCGTGCTGCTGATCCTACTGCCGCAACA
66 CAGAATGCACAAGCCGAGCATCGACCCGGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAACA
* *
29727338 CTTGGTCTGGTCTGATCTTAGACT-GATAATAAACTCCATATGCTTAGACTACGG
131 CTCGGTCCGGTCTGATCTTAGACTGGAT-ATAAACTCCATATGCTTAGACTACGG
* * *
29727392 ATGAACTCTGTATGCCTAAGTCAGCCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
* * * *
29727457 CAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTG-TCGATCCTACTGCCACAAC
66 CAGAATGCACAAGCCGAGCATCGACCCGGTCCCCCCTGCGTGCTGCT-GATCCTACTGCCACAAC
* * * * * **
29727521 CCTCGGTCCGGTCTGATCTTAGACTGGGTATGAACTTCGTATGCTTAGACTGGGG
130 ACTCGGTCCGGTCTGATCTTAGACTGGATATAAACTCCATATGCTTAGACTACGG
* ** * *
29727576 ATGAACTCCGTATGCCTAAGTTAACCCACAAAATGAGCGTGCGGACGCTCAGCCG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
29727631 ACTAGAGAGG
Statistics
Matches: 204, Mismatches: 33, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
183 1 0.00
184 201 0.99
185 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
CAGAATGCACAAGCCGAGCATCGACCCGGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAACA
CTCGGTCCGGTCTGATCTTAGACTGGATATAAACTCCATATGCTTAGACTACGG
Found at i:29727574 original size:26 final size:26
Alignment explanation
Indices: 29727538--29727590 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29727528 CCGGTCTGAT
* *
29727538 CTTAGACTGGGTATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29727564 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
29727590 C
1 C
29727591 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29728296 original size:26 final size:26
Alignment explanation
Indices: 29728258--29728310 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29728248 AGCTCAAACT
29728258 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29728284 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
29728310 C
1 C
29728311 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29728919 original size:21 final size:21
Alignment explanation
Indices: 29728892--29728941 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
29728882 GGTGATCACC
*
29728892 CCGGTCCCCCTCTACGTGCTG
1 CCGGTCCCCCTCTACATGCTG
* *
29728913 TCGGTCCCCCTCTGCATGCTG
1 CCGGTCCCCCTCTACATGCTG
29728934 CCGGTCCC
1 CCGGTCCC
29728942 GTTGCCACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (21 bp):
CCGGTCCCCCTCTACATGCTG
Found at i:29729098 original size:25 final size:26
Alignment explanation
Indices: 29729070--29729121 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29729060 CCGATCCGAT
*
29729070 CTTAGACT-GGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
* *
29729095 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
29729121 C
1 C
29729122 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:29729618 original size:26 final size:26
Alignment explanation
Indices: 29729582--29729634 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29729572 TCGATTCGAT
29729582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29729608 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29729634 C
1 C
29729635 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29729718 original size:22 final size:22
Alignment explanation
Indices: 29729688--29729732 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
29729678 AGAGAGGCCG
* *
29729688 GTCGGAGAGGCATAATGCGCAA
1 GTCGAAGAGGCAGAATGCGCAA
29729710 GTCGAAGAGGCAGAATGCGCAA
1 GTCGAAGAGGCAGAATGCGCAA
29729732 G
1 G
29729733 CCGGGGATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.38, T:0.11
Consensus pattern (22 bp):
GTCGAAGAGGCAGAATGCGCAA
Found at i:29729829 original size:26 final size:26
Alignment explanation
Indices: 29729800--29729852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29729790 CCGATTCGAT
*
29729800 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29729826 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29729852 C
1 C
29729853 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29729875 original size:218 final size:218
Alignment explanation
Indices: 29729497--29729925 Score: 725
Period size: 218 Copynumber: 2.0 Consensus size: 218
29729487 AACCTGTAGG
* ** * *
29729497 AGAGGCAGAATGCGCAAGCTGGGGATCGGTCCGGTCTCCCTGGGTGCTACTGATCTTGCTGCCGT
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCTCCCTGGGTGCTACCAATCCTGCTGCCGC
*
29729562 AACCTTCAGTTCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
66 AACCTTCAGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* * *
29729627 CCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAGCCGACTAGAGAGGCCGGTCG
131 CCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACTAGAGAGGCCGATCG
29729692 GAGAGGCATAATGCGCAAGTCGA
196 GAGAGGCATAATGCGCAAGTCGA
* *
29729715 AGAGGCAGAATGCGCAAGCCGGGGATTGGTCCGGTC-CCTCTGGGTGCTGCCAATCCTGCTGCCG
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCTCC-CTGGGTGCTACCAATCCTGCTGCCG
*
29729779 CAACCTTCAGTCCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
65 CAACCTTCAGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
*
29729844 TCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACTGGAGAGGCCGATC
130 TCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACTAGAGAGGCCGATC
29729909 GGAGAGGCATAATGCGC
195 GGAGAGGCATAATGCGC
29729926 TAGCCGGGGA
Statistics
Matches: 197, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
217 2 0.01
218 195 0.99
ACGTcount: A:0.24, C:0.26, G:0.31, T:0.20
Consensus pattern (218 bp):
AGAGGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCTCCCTGGGTGCTACCAATCCTGCTGCCGC
AACCTTCAGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
CCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACTAGAGAGGCCGATCG
GAGAGGCATAATGCGCAAGTCGA
Found at i:29731445 original size:15 final size:16
Alignment explanation
Indices: 29731412--29731445 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
29731402 CGCACACCCC
*
29731412 TCGGACCCCCCAATCG
1 TCGGAACCCCCAATCG
29731428 TCGGAACCCCCAAT-G
1 TCGGAACCCCCAATCG
29731443 TCG
1 TCG
29731446 CCGGTTAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.15
Consensus pattern (16 bp):
TCGGAACCCCCAATCG
Found at i:29731566 original size:26 final size:26
Alignment explanation
Indices: 29731537--29731590 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
29731527 GGCTCAAACT
* *
29731537 CTTAGAC-TGGGAATGAGCTCCGTCTG
1 CTTAGACAT-GGAATGAACTCCGTATG
29731563 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29731589 CT
1 CT
29731591 CTTTAAGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29731803 original size:277 final size:277
Alignment explanation
Indices: 29731309--29731866 Score: 963
Period size: 277 Copynumber: 2.0 Consensus size: 277
29731299 AAAATCTCAA
* *
29731309 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGATTGATGAGGGATAGGAGGCCAATATAAGGGCCA
1 ATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGAGGCCAATATAAGGGCCA
**
29731374 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGACCCCCCAATCGTCGGAACCCCC
66 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGACCCCCCAATCACCGGAACCCCC
* * *
29731439 AATGTCGCCGGTTAGGCTCTCCGACGATGGTGCCCCAGGCAAAAAAAATGTGACACTAGCACATG
131 AATGCCACCGGTTAGGCTCTCCGACGATGGTGCCCCAGGCAAAAAAAATGCGACACTAGCACATG
* * *
29731504 CCCGAGCCCAGCACATGCACCGTGGCTCAAACTCTTAGACTGGGAATGAGCTCCGTCTGCTTAGA
196 CCCGAGCCCAGCACATGCACCGTGGCTCAAACTCTTAGACTAGGAATGAACTCCGTATGCTTAGA
*
29731569 CATGGAATGAACTCCGT
261 CACGGAATGAACTCCGT
* *
29731586 ATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
1 ATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGAGGCCAATATAAGGGCCA
*
29731651 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGACCCCCCAATCACCGGAATCCCC
66 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGACCCCCCAATCACCGGAACCCCC
29731716 AATGCCACCGGTTAGGCTCTCCGACGATGGTGCCCCAGGCAAAAAAAATGCGACACTAGCACATG
131 AATGCCACCGGTTAGGCTCTCCGACGATGGTGCCCCAGGCAAAAAAAATGCGACACTAGCACATG
* *
29731781 CCTGAGCCCAGCACGTGCACCGTGGCTCAAACTCTTAGACTAGGAATGAACTCCGTATGCTTAGA
196 CCCGAGCCCAGCACATGCACCGTGGCTCAAACTCTTAGACTAGGAATGAACTCCGTATGCTTAGA
*
29731846 CACGGAATGAACTTCGT
261 CACGGAATGAACTCCGT
29731863 ATGC
1 ATGC
29731867 CTAAGCCAAC
Statistics
Matches: 264, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
277 264 1.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.19
Consensus pattern (277 bp):
ATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGAGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGACCCCCCAATCACCGGAACCCCC
AATGCCACCGGTTAGGCTCTCCGACGATGGTGCCCCAGGCAAAAAAAATGCGACACTAGCACATG
CCCGAGCCCAGCACATGCACCGTGGCTCAAACTCTTAGACTAGGAATGAACTCCGTATGCTTAGA
CACGGAATGAACTCCGT
Found at i:29731852 original size:26 final size:26
Alignment explanation
Indices: 29731814--29731866 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29731804 GGCTCAAACT
29731814 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
29731840 CTTAGAC-ACGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
29731866 C
1 C
29731867 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29732132 original size:158 final size:156
Alignment explanation
Indices: 29731839--29732868 Score: 741
Period size: 158 Copynumber: 6.6 Consensus size: 156
29731829 AACTCCGTAT
* * * *
29731839 GCTTAGACACGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
29731904 CCGATCGGAGAGGTAGAATACGCAAGTCAGGGACCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCC
* * *
29731969 TGCTGCCGCAACCCTCAGTCTGGTCCGA
129 CGCTGCCACAACCCTCAGTCCGGTCCGA
* * * * * *
29731997 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGAGGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
29732062 CTGGCCGGAGAGGCATAATGCGCAAGTC-GGAGATTGACCCGATCCCCCTTACGTGCTGCCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAG-CAGG-GATCGGCCTGGTCCCCCCTACGTGCTGTCGATC
* * *
29732126 CCGCTGCCACAACCCTCAGTCTGG-CTGGG
128 CCGCTGCCACAACCCTCAGTCCGGTC-CGA
*
29732155 GCTTAGACATGGAATGAA-TCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGTGCGTGCGC
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC--G-G-GCGC
** * *
29732219 TCAGCAAGCCGGAGAGGCAGAAT--GC-A-CA---A---GCCTGATCCCCCCTATGTGCTGTCGA
61 TCAGCCGGCCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGA
** * * * *
29732274 TCATGCTGCCGCAACCTTCGGTCCGGTCCAA
126 TCCCGCTGCCACAACCCTCAGTCCGGTCCGA
* * * * * * * * *
29732305 TCTTATACTATGAATGAACTCTGTATGCCTAAGTCAACCTACGAAATGAGTGTGCGGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
29732370 CCAGCCAGAGAGGCATAATGTGCAAGCCAGGGATCGGCCTGGTCCCCTTCTGCATGCTGCCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCTGGTCCCC-CCTACGTGCTGTCGATC
* * * *
29732435 CCGCTACCACAA-CCTCGGTCCGG-CTAGG
128 CCGCTGCCACAACCCTCAGTCCGGTC-CGA
* * * * * *
29732463 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
29732528 CCGACCAGAGAGACAGAAT-CACAAGCAGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGAT-C
65 CCGGCCGGAGAGGCAGAATGCGCAAGCA-GGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCC
** * * * * *
29732591 CGCTATCGCAACCCTCGGTCTGATCCTA
129 CGCTGCCACAACCCTCAGTCCGGTCCGA
* * * * * * * *
29732619 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGCGAGTGTTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
29732684 CCGACCGAAGAGGCA-TATGCGTAAGCCGGGGATCGGCCTGGTCCCCCTCTACGTGCT-ACTAGT
65 CCGGCCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCTGGTCCCCC-CTACGTGCTGTCGA-T
* ** *
29732747 CCCGCTGCCACAACCCTCAATCCGGTTTGG
127 CCCGCTGCCACAACCCTCAGTCCGGTCCGA
* * *
29732777 GCTTAGACTTGGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
29732841 GCTGGCTGGAGGGGCAGAATGCGCAAGC
64 GCCGGCCGGAGAGGCAGAATGCGCAAGC
29732869 TGACCCTCGG
Statistics
Matches: 672, Mismatches: 162, Indels: 76
0.74 0.18 0.08
Matches are distributed among these distances:
147 23 0.03
148 1 0.00
149 4 0.01
150 55 0.08
151 31 0.05
152 2 0.00
153 1 0.00
155 14 0.02
156 110 0.16
157 66 0.10
158 305 0.45
159 36 0.05
160 1 0.00
161 23 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCCG
CTGCCACAACCCTCAGTCCGGTCCGA
Found at i:29732781 original size:314 final size:315
Alignment explanation
Indices: 29732254--29732840 Score: 741
Period size: 314 Copynumber: 1.9 Consensus size: 315
29732244 ACAAGCCTGA
* * * * * * *
29732254 TCCCCCCTATGTGCTGTCGATCATGCTGCCGCAACCTTCGGTCCGGTCCAATCTTATACTATGAA
1 TCCCCCCTACGTGCTGTCGATCACGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAA
* * * * * * *
29732319 TGAACTCTGTATGCCTAAGTCAACCTACGAAATGAGTGTGCGGGCGCTGAGCCAGCCAGAGAGGC
66 TGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGCGAGCGCTGAGCCAGCCAGAGAGGC
* * * * *
29732384 ATAATGTGCAAGCCAGGGATCGGCCTGGTCCCCTTCTGCATGCTGCCGGTCCCGCTACCACAACC
131 ATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTCTACATGCTACCAGTCCCGCTACCACAACC
** * *
29732449 TCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGT
196 TCAATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGC
*
29732514 GTACGGGTGCTCAACCGACCAGAGAGACAGAATCACAAGCAGGGGATCAGCCCGG
261 GTACGGGCGCTCAACCGACCAGAGAGACAGAATCACAAGCAGGGGATCAGCCCGG
* * * * *
29732569 TCCCCCCTGCGTGCTGTCGATC-CGCTATCGCAACCCTCGGTCTGATCCTATCTTAGACTGGGAA
1 TCCCCCCTACGTGCTGTCGATCACGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAA
* *
29732633 TGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGCGAGTGTTGAGCC-GACC-GAAGAG
66 TGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGCGAGCGCTGAGCCAG-CCAG-AGAG
* * * * *
29732696 GCAT-ATGCGTAAGCCGGGGATCGGCCTGGTCCCCCTCTACGTGCTACTAGTCCCGCTGCCACAA
129 GCATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTCTACATGCTACCAGTCCCGCTACCACAA
* * * * *
29732760 CCCTCAATCCGGTTTGGGCTTAGACTTGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAAAG
194 -CCTCAATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAG
*
29732825 GGCGTGCGGGCGCTCA
258 GGCGTACGGGCGCTCA
29732841 GCTGGCTGGA
Statistics
Matches: 227, Mismatches: 42, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
313 52 0.23
314 155 0.68
315 20 0.09
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (315 bp):
TCCCCCCTACGTGCTGTCGATCACGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAA
TGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGCGAGCGCTGAGCCAGCCAGAGAGGC
ATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTCTACATGCTACCAGTCCCGCTACCACAACC
TCAATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGC
GTACGGGCGCTCAACCGACCAGAGAGACAGAATCACAAGCAGGGGATCAGCCCGG
Found at i:29732919 original size:26 final size:27
Alignment explanation
Indices: 29732890--29732943 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
29732880 CCTGTCCGAT
29732890 CTTAGACTGGGAATGAACTCT-GTATG
1 CTTAGACTGGGAATGAACTCTCGTATG
* *
29732916 CTTAGACTGGGGATGAACTTTCGTATG
1 CTTAGACTGGGAATGAACTCTCGTATG
29732943 C
1 C
29732944 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCTCGTATG
Found at i:29733242 original size:170 final size:171
Alignment explanation
Indices: 29732915--29733283 Score: 385
Period size: 170 Copynumber: 2.2 Consensus size: 171
29732905 AACTCTGTAT
* ** * *
29732915 GCTTAGACTGGGGATGAACTTTCGTATGCCTAAGTTAACCCACGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACTGGGAATGAACTTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCA
* * * ** * * *
29732980 GTCGGCCGGAGAGCATAATGTGCAAGCCGGGGATCAGCCCGATTCCCCTCTGCGTGCTGTCGATC
66 GCCGGCCGCAGAGCAGAATGCACAAGCCGGGGATCAGCCCGAGTCCCCCCTACGTGCTGTCGATC
*
29733045 TCGCTGTTGGTCCTGCTACCACAACCCT-AGGTCTGGCTGGG
131 TCGCTGCTGGTCCTGCTACCACAACCCTCA-GTCTGGCTGGG
*
29733086 GCTTAGACAT-GGAATGAAC-TTCGTCTGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTC
1 GCTTAGAC-TGGGAATGAACTTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTC
* * * *
29733149 AGCCGGCCTCAGAGGGAGAATGCACAAGCCGGGGA-CTGGCCC-AGTCCCCCCTATGTGCTGTCG
65 AGCCGGCCGCAGA-GCAGAATGCACAAGCCGGGGATC-AGCCCGAGTCCCCCCTACGTGCTGTCG
* * * ** * *
29733212 ATC-CTGCTGCTGGTTCTGTTGCTGCAACCCTCAGTCTGG-TCCGA
128 ATCTC-GCTGCTGGTCCTGCTACCACAACCCTCAGTCTGGCT-GGG
*
29733256 TCTTAGACTGGGAATGAAC-TTCGTATGC
1 GCTTAGACTGGGAATGAACTTTCGTATGC
29733284 TTAGACATGG
Statistics
Matches: 163, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
169 3 0.02
170 121 0.74
171 38 0.23
172 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCA
GCCGGCCGCAGAGCAGAATGCACAAGCCGGGGATCAGCCCGAGTCCCCCCTACGTGCTGTCGATC
TCGCTGCTGGTCCTGCTACCACAACCCTCAGTCTGGCTGGG
Found at i:29733295 original size:26 final size:26
Alignment explanation
Indices: 29733257--29733309 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29733247 CTGGTCCGAT
*
29733257 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29733283 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29733309 C
1 C
29733310 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29733550 original size:354 final size:362
Alignment explanation
Indices: 29732883--29733569 Score: 758
Period size: 354 Copynumber: 1.9 Consensus size: 362
29732873 CCTCGGTCCT
* *
29732883 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTTCGTATGCCTAA
1 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCCGTATGCCTAA
** * * * **
29732948 GTTAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCGGAGAGCATAATGTGCAAGCCGGGGA
66 GCCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGGCCGGAGAGCAGAATGCACAAGCCGGGGA
* *
29733013 TCAGCCCGATTCCCCTCTGCGTGCTGTCGATCTCGCTGTTGGTCCTGCTACCACAACCCTAGGTC
131 TCAGCCCGAGTCCCCCCTGCGTGCTGTCGA-CTCGCTGTTGG-CC-GCT---ACAACCCTAGGTC
* * *
29733078 TGGCTGGGGCTTAGACATGGAATGAACTTCGTCTGCCTAAGCCAACCCACAAAACAAGCGTACGG
190 TGGCTCGAGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGG
* ** * *
29733143 GCGCTCAGCCGGCCTCAGAGGGAGAATGCACAAGCCGGGGACTGGCCCAGTCCC-CCCTATGTGC
255 GCGCTCAGCAGGCCTCAGAAAGAGAATGCACAAGCCGAGGACTGGCCCAGTCCCTCCCTACGTGC
*
29733207 TGTCGATCCTGCTGCTGGTTCTGTTGCTGCAACCCTCAGTCTG
320 TGCCGATCCTGCTGCTGGTTCTGTTGCTGCAACCCTCAGTCTG
29733250 GTCCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACAT-GGAATGAAC-TCCGTATGCCT
1 GTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGAC-TGGGAATGAACTTCCGTATGCCT
* * * **
29733312 AGGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGACGCGGAATGCACAAGTTGG
64 AAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGGCCGGAGA-GCAGAATGCACAAGCCGG
* * *
29733377 GGATCAG-CCTAGTCCCCCCTGCGTGCTGTTGA-TC-CTGTT-G-C-CT-CAACCCTTGGTCTGG
128 GGATCAGCCCGAGTCCCCCCTGCGTGCTGTCGACTCGCTGTTGGCCGCTACAACCCTAGGTCTGG
* * * * *
29733435 -TCCGATCTTAGAC-TAGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
193 CT-CGAGCTTAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAACCCACAAAACAAGCGTACGG
* * * * ** * * *
29733497 GCGCTGAGCAGGCC-GA-AAATACGTAATGCGCAAGTTGAGGATTGGCTCAGTCCCTCTCTACGT
255 GCGCTCAGCAGGCCTCAGAAAGA-G-AATGCACAAGCCGAGGACTGGCCCAGTCCCTCCCTACGT
29733560 GCTGCCGATC
318 GCTGCCGATC
29733570 GCGCTACCAC
Statistics
Matches: 269, Mismatches: 42, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
352 2 0.01
353 6 0.02
354 97 0.36
355 15 0.06
358 2 0.01
360 1 0.00
362 1 0.00
363 5 0.02
364 2 0.01
366 72 0.27
367 65 0.24
368 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (362 bp):
GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCCGTATGCCTAA
GCCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGGCCGGAGAGCAGAATGCACAAGCCGGGGA
TCAGCCCGAGTCCCCCCTGCGTGCTGTCGACTCGCTGTTGGCCGCTACAACCCTAGGTCTGGCTC
GAGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTC
AGCAGGCCTCAGAAAGAGAATGCACAAGCCGAGGACTGGCCCAGTCCCTCCCTACGTGCTGCCGA
TCCTGCTGCTGGTTCTGTTGCTGCAACCCTCAGTCTG
Found at i:29733639 original size:159 final size:158
Alignment explanation
Indices: 29733282--29733669 Score: 379
Period size: 158 Copynumber: 2.4 Consensus size: 158
29733272 AACTTCGTAT
*
29733282 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
29733347 CCGGCCGGAGACGCGGAATGCACAAGTTGGGGATCAGCCTAGTCCCCCCTGCGTGCTGTTGATCC
66 CAGGCCGAAAACACGGAATGCACAAGTTGAGGATCAGCCTAGTCCCCCCTACGTGCTGCCGATCC
* * * **
29733412 TGTTGCCTCAACCCTTGGTCTGGTCCGA
131 TGCTACCACAACCCTCAGTCTGGTCCGA
* * * * *
29733440 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
29733504 GCAGGCCGAAAATACGTAATGCGCAAGTTGAGGAT-TGGCTCAGTCCCTCTCTACGTGCTGCCGA
65 GCAGGCCGAAAACACGGAATGCACAAGTTGAGGATCAGCCT-AGTCCC-CCCTACGTGCTGCCGA
* * *
29733568 TCGC-GCTACCACAATCCTCAGTCTGG-CTGGG
128 TC-CTGCTACCACAACCCTCAGTCTGGTC-CGA
* * * * * * *
29733599 GCTTAGACATGGAATGGACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
*
29733664 CCGGCC
66 CAGGCC
29733670 AGAGAGGCAG
Statistics
Matches: 183, Mismatches: 41, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 90 0.49
159 87 0.48
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CAGGCCGAAAACACGGAATGCACAAGTTGAGGATCAGCCTAGTCCCCCCTACGTGCTGCCGATCC
TGCTACCACAACCCTCAGTCTGGTCCGA
Found at i:29733794 original size:26 final size:26
Alignment explanation
Indices: 29733758--29733810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29733748 CCATTTTAAA
29733758 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29733784 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29733810 C
1 C
29733811 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29734638 original size:26 final size:26
Alignment explanation
Indices: 29734609--29734661 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29734599 CCGATCTGAT
*
29734609 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
29734635 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
29734661 C
1 C
29734662 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:29734829 original size:26 final size:26
Alignment explanation
Indices: 29734793--29734848 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
29734783 CCGGTTCGAT
*
29734793 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
29734819 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
29734845 CTTA
1 CTTA
29734849 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:29734893 original size:184 final size:185
Alignment explanation
Indices: 29734582--29735004 Score: 469
Period size: 184 Copynumber: 2.3 Consensus size: 185
29734572 GTCGGTCTTA
*
29734582 CTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA
1 CTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACATGGA
* * * * *
29734647 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAGCCAACCGAAGAGG
66 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCAACCGAAGAGG
* * *
29734712 CAAAATGCGTAAGCCGAGGATCGACCCGATC-CCCCCTATGTGCTGTCGATCATG
131 CAAAATGCGCAAGCCGAGGATCGACCCGATCGCCCCCTATGTGCTGCCGATCACG
* * *
29734766 CTACCGCAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAAAGAACTCTGTATGCTTAGAC-TGG
1 CTACCACAACCCTCGGTCCGATCT-GATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACAT-G
* * * * * * * * *
29734829 GGATGAACTCCGTATGCTTAAGTCAACCCACAAAACGATCATACGGGTGCTGAGTCAGCCGAAGA
64 GAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCAACCGAAGA
* ** * * * * *
29734894 GGCATAATGCGCAAGTTGGGGATCGACTCGATCGCCCTCTGTGTGCTGCCGATCCCG
129 GGCAAAATGCGCAAGCCGAGGATCGACCCGATCGCCCCCTATGTGCTGCCGATCACG
* * * * *
29734951 CTGCCACAACCCTCGGTCC-AGCTGGAGCTTAGACAT-GGAATGAACTCCCTATGC
1 CTACCACAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAAAGAACTCCGTATGC
29735005 CTAAGCCAAC
Statistics
Matches: 196, Mismatches: 38, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
183 2 0.01
184 133 0.68
185 60 0.31
186 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (185 bp):
CTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCAACCGAAGAGG
CAAAATGCGCAAGCCGAGGATCGACCCGATCGCCCCCTATGTGCTGCCGATCACG
Found at i:29735261 original size:342 final size:343
Alignment explanation
Indices: 29734634--29735261 Score: 784
Period size: 342 Copynumber: 1.8 Consensus size: 343
29734624 AACTCCGTAT
* * **
29734634 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * **
29734699 CCAACCGAAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTATGTGCTGTCGATCA
66 CCAACAGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCA
* * *
29734764 TGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAAAGAACTCTGTATGCTTAGACTGG
131 TGCTACCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAAAGAACTCTGTATGCTTAGACTGG
* * * *
29734829 GGATGAACTCCGTATGCTTAAGTCAACCCACAAAACGATCATACGGGTGCTGAGTCAGCCGAAGA
196 GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGATCATACGGGCGCTCAGACAGCCGAAGA
* **
29734894 GGCATAATGCGCAAGTTGGGGATCGACTCGATCGCCCTCTGTGTGCTGCCGATCCCGCTGCCACA
261 GGCATAATGCACAAGCCGGGGATCGACTCGATCGCCCTCTGTGTGCTGCCGATCCCGCTGCCACA
29734959 ACCCTCGGTCCAGCTGGA
326 ACCCTCGGTCCAGCTGGA
29734977 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * ** * ** *
29735042 CCAGTCAG-AGAGGCAGAATGCGCCAGCCGGGGATCGGTCCGGTCCCCTTTACGTGCTACCTA-C
66 CCA-ACAGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATC
* * * * * *
29735105 CTGCTGCCGTAACCCTCTGTCCGATCCGATTTTACACTGGGAATGAACT-TCGTATGCTTAGACT
130 ATGCTACCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAAAGAACTCT-GTATGCTTAGACT
* * * * *
29735169 GGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGT-GTGCTGGCGCTCA-ACAGACC-
194 GGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA-TCATACGGGCGCTCAGACAG-CCG
*
29735231 AGAGAGGCA-AGATGTACAAGCCGGGGATCGA
257 A-AGAGGCATA-ATGCACAAGCCGGGGATCGA
29735262 ATGGGTGGTA
Statistics
Matches: 238, Mismatches: 41, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
341 6 0.03
342 124 0.52
343 106 0.45
344 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (343 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
CCAACAGAAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCA
TGCTACCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAAAGAACTCTGTATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGATCATACGGGCGCTCAGACAGCCGAAGA
GGCATAATGCACAAGCCGGGGATCGACTCGATCGCCCTCTGTGTGCTGCCGATCCCGCTGCCACA
ACCCTCGGTCCAGCTGGA
Found at i:29736883 original size:157 final size:158
Alignment explanation
Indices: 29736683--29736974 Score: 383
Period size: 157 Copynumber: 1.9 Consensus size: 158
29736673 CTTATACTGA
* * * *
29736683 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG-CGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAGCCGACCGGAGA
* * *
29736747 GGCATAATACGCAAGCCGAGGATAGGCCCGATCCCCCTCTTCGTGCTGCCGATCCCGCAGCCACA
66 GGCAGAATACGCAAGCCGAGGATAGGCCCGATCCCCC-CTGCGTGCTACCGATCCCGCAGCCACA
29736812 ACCCTCATTCCGACTGGGGCTTAGACATG
130 ACCCTCATTCCGACTGGGGCTTAGACATG
* * *
29736841 GAATGAACTCC-TATGCCTAAGCCAACCCACAAAATG-GACGTACAGGCGTTCAGCCGATCGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG-CGTACAGGCGCTCAGCCGACCGGAG
* * * * * * * *
29736904 AGGCAGAATATGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGGTCCTGCTGTCACA
65 AGGCAGAATACGCAAGCCGAGGATAGGCCCGATCCCCCCTGCGTGCTACCGATCCCGCAGCCACA
29736969 ACCCTC
130 ACCCTC
29736975 GATCTAGTCT
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
156 1 0.01
157 61 0.54
158 52 0.46
ACGTcount: A:0.25, C:0.33, G:0.26, T:0.16
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAGCCGACCGGAGA
GGCAGAATACGCAAGCCGAGGATAGGCCCGATCCCCCCTGCGTGCTACCGATCCCGCAGCCACAA
CCCTCATTCCGACTGGGGCTTAGACATG
Found at i:29736992 original size:157 final size:157
Alignment explanation
Indices: 29736477--29737014 Score: 459
Period size: 158 Copynumber: 3.4 Consensus size: 157
29736467 TCGATCCTGT
* * * * *
29736477 TACCGGTCCTGCTGCCACAACCCTCGGTC-CGGCTGGGA-CTTAGACATGGAATTAACTCCATAT
1 TACCGATCCTGCTGCCACAACCCTCGATCTCGTCT-GGATCTTAGAC-TGGAATGAACTCCGTAT
* * * * *
29736540 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGTTCAGTCGGTCGGAGAGGTAGAATGCGCAAG
64 GCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAG-CGATCGGAGAGGCAGAATACGCAAG
* * **
29736605 CTGGGGATCGGTCCGGTAACCCCTACGTGC
128 CTGGGGATCGGCCCGATCCCCCCTACGTGC
** * ** ** * *
29736635 TGTCGATCTTGCTAG-CGTAA-CCTTAAGTCT-GATC-CGATCTTATACTGAGAATGAACTCCGT
1 TACCGATCCTGCT-GCCACAACCCTCGA-TCTCG-TCTGGATCTTAGACTG-GAATGAACTCCGT
* * * * *
29736696 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCGACCGGAGAGGCATAATACGCAA
62 ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGCGATCGGAGAGGCAGAATACGCAA
* * * *
29736761 GCCGAGGATAGGCCCGATCCCCCTCTTCGTGC
127 GCTGGGGATCGGCCCGATCCCCC-CTACGTGC
* * * * **
29736793 TGCCGATCCCGCAGCCACAACCCTC-AT-TCCGACTGGGGCTTAGACATGGAATGAACTCC-TAT
1 TACCGATCCTGCTGCCACAACCCTCGATCT-CGTCTGGATCTTAGAC-TGGAATGAACTCCGTAT
* * * *
29736855 GCCTAAGCCAACCCACAAAATG-GACGTACAGGCGTTCAGCCGATCGGAGAGGCAGAATATGCAA
64 GCCTAAGCCAACCCACGAAACGAG-CGTACGGGCGTTCAG-CGATCGGAGAGGCAGAATACGCAA
*
29736919 GCTGGGGATCGGCCCGATCCCCCCTGCGTGC
127 GCTGGGGATCGGCCCGATCCCCCCTACGTGC
* * * *
29736950 TACCGGTCCTGCTGTCACAACCCTCGATCTAGTCT-GATCTTAGACTGGGAATAAACTCCGTATG
1 TACCGATCCTGCTGCCACAACCCTCGATCTCGTCTGGATCTTAGACT-GGAATGAACTCCGTATG
29737014 C
65 C
29737015 TTAGACTGAG
Statistics
Matches: 294, Mismatches: 67, Indels: 38
0.74 0.17 0.10
Matches are distributed among these distances:
156 3 0.01
157 125 0.43
158 158 0.54
159 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
TACCGATCCTGCTGCCACAACCCTCGATCTCGTCTGGATCTTAGACTGGAATGAACTCCGTATGC
CTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGCGATCGGAGAGGCAGAATACGCAAGCTG
GGGATCGGCCCGATCCCCCCTACGTGC
Found at i:29737032 original size:26 final size:26
Alignment explanation
Indices: 29736988--29737040 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29736978 CTAGTCTGAT
29736988 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
29737014 CTTAGACTGAGG-ATGAACTCTGTATG
1 CTTAGACTG-GGAATAAACTCCGTATG
29737040 C
1 C
29737041 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29737748 original size:26 final size:26
Alignment explanation
Indices: 29737710--29737814 Score: 158
Period size: 26 Copynumber: 4.0 Consensus size: 26
29737700 GGCTCAAAAT
29737710 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
29737736 CTTAGACATGGAAGGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29737762 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* *
29737788 CTTCGACGTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29737814 C
1 C
29737815 CTAAGCCAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
26 71 0.99
27 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29738825 original size:159 final size:158
Alignment explanation
Indices: 29738464--29738966 Score: 419
Period size: 158 Copynumber: 3.2 Consensus size: 158
29738454 AACTCCGTAT
* * * *
29738464 GCTTAGACATGGAATGAACTCCGTCTGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAA
* * * * * * * *
29738529 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCTCTCCTAGGTGCTGTCGATCC
66 CAGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
* * * * *
29738594 TACTGCCGCAACTCTCGGTTCGGTCCGA
131 CACTGCCACAACCCTCAGTTCGGTCAGA
* * * * *
29738622 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAAACCATGAAACTA-CGGTGCAGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-GTGCAGGCACTC
* * *
29738685 AACAGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTATCGG
64 AACAGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTACGTGCTATCGA
* * *
29738750 TCCCGCTGCCACAACCCTTAGTTCGG-CTAGG
128 TCCCACTGCCACAACCCTCAGTTCGGTC-AGA
* * * * **
29738781 GCTTAGACATAGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACG-GACGTGCGGGGGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCAGGCACTCA
* * * * * * * * * *
29738845 GTC-GGTC-AGAGAGGTAGAATGCACAAGCCAGAGATCGGCCCGGTCCCCCCTGCGTCCTGTCGA
65 -ACAGGCCGA-AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGA
* * * * *
29738908 TCCTACTACCACAACCCTCGGTCCGGAT-TGA
128 TCCCACTGCCACAACCCTCAGTTCGG-TCAGA
*
29738939 TCTTAGAC-TGAGAATGAACTCCGTATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
29738967 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 148 0.55
159 116 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAA
CAGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
CACTGCCACAACCCTCAGTTCGGTCAGA
Found at i:29738969 original size:26 final size:26
Alignment explanation
Indices: 29738940--29738992 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29738930 CCGGATTGAT
29738940 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * * *
29738966 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
29738992 C
1 C
29738993 CTAATCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:29739515 original size:159 final size:158
Alignment explanation
Indices: 29739143--29739916 Score: 620
Period size: 158 Copynumber: 4.9 Consensus size: 158
29739133 CCTCAGTCCG
* *
29739143 GACTGGG--GCTTAGACATGGAATGATCTCCGTATGACTAAGCCAACCCACGAAACGAGCGTGCG
1 GACTGGGCCGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* * *
29739206 GGTGCTCAGTCGACT-GAAGAGGCAGAATGCGCAAGCCGGGGAAT-GGCCTGATCCCCCCTGCGT
66 GGCGCTCAG-CG-CTCGAAGAGGCAGAATGCACAAGCCGGGG-ATCGGCCCGATCCCCCCTGCGT
** * *
29739269 GCTGTCGATCCTGCTGTCGCAACCCTCAGTT
128 GCTGTCGATCCTGCTACCACAACCCTCGGTT
* * * * * *
29739300 ---TGGTCCGATCTTAGTCCA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAACAT
1 GACTGGGCCG--CTTAG-ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
* * ** * * *
29739361 GCTGGCGCTGAGC-CTCG-AGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTG
63 GCGGGCGCTCAGCGCTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTGCG
* * *
29739424 TGCTGTAGGTCC-GCTGCCACAACCCTCGGTAT
127 TGCTGTCGATCCTGCTACCACAACCCTCGGT-T
*
29739456 CGACTGGGCCTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTA
1 -GACTGGGCC-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
* * * * * *
29739521 CGGGTGCTCAACCGGTCGGAGAGGTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGT
64 CGGGCGCTC-AGCGCTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGT
* * * * * *
29739586 GTTATCGATCCTACTACTGA-AACCCTTGGTC
128 GCTGTCGATCCTGCTAC-CACAACCCTCGGTT
* * * * *
29739617 CAAT---CCATTCTTAGAC-TGGCAATGAACCCCGTATGCCTAA-CTCAACCCACGAAATGAGCG
1 GACTGGGCC--GCTTAGACATGG-AATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCG
* * * * * *
29739677 TGTGGGCACTGAGCTGATCGAAGAGGCATAATGTACAAGCCGGGGATCGGCCCGATCCCCCTCTG
62 TGCGGGCGCTCAGC-GCTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTG
* *
29739742 CGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCT
125 CGTGCTGTCGATCCTGCTACCACAACCCTCGGT-T
* * * * *
29739777 GGCTGGG--GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACG-AACGGGCGTGCA
1 GACTGGGCCGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* * * * * * * *
29739839 GGCGCTC-GACTGGTC-AGAGTGGCAAAATGCACTAGCCGAGGATCGGCCTGGTTCCCCCTGCGT
66 GGCGCTCAG-C-GCTCGA-AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGT
29739902 GCTGTCGATCCTGCT
128 GCTGTCGATCCTGCT
29739917 GTCGCAACCC
Statistics
Matches: 485, Mismatches: 98, Indels: 68
0.75 0.15 0.10
Matches are distributed among these distances:
154 5 0.01
155 50 0.10
156 17 0.04
157 30 0.06
158 194 0.40
159 112 0.23
160 14 0.03
161 16 0.03
162 46 0.09
163 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GACTGGGCCGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCGCTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCT
GTCGATCCTGCTACCACAACCCTCGGTT
Found at i:29739643 original size:317 final size:314
Alignment explanation
Indices: 29739143--29739968 Score: 948
Period size: 317 Copynumber: 2.6 Consensus size: 314
29739133 CCTCAGTCCG
* *
29739143 GACTGGGGCTTAGACATGGAATGATCTCCGTATGACTAAGCCAACCCACGAAACGAGCGTGCGGG
1 GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
** * * *
29739208 TGCTCAGTC-GACTGAAGAGGCAGAATGCGCAAGCCGGGGAAT-GGCCTGATCCCCCCTGCGTGC
66 TGCTCAACCGGTC-GGAGAGGCAGAATGCACAAGCCGGGG-ATCGGCCTGATCCCCCCTGCGTGC
** *** * *
29739271 TGTCGATCCTGCTGTCGCAACCCTCAGTTTGGTCCGATCTTAGTCCAGGAATGAACTCCGTATGC
129 TGTCGATCCTGCTGTCGCAACCCTTGGTCCAGTCC-ATCTTAG-ACTGGAATGAACTCCGTATGC
* * * *
29739336 ATAAGTCAACCCACGAAACGAACATGCT-GGCGCTGAGC-CTCG-AGAGGCAGAATGTGCAAGCC
192 ATAACTCAACCCACGAAACGAACATG-TGGGCACTGAGCGATCGAAGAGGCAGAATGTACAAGCC
* * *
29739398 GGGGATCGACCCGGTCCCCCTCTGTGTGCTGTAGGT-CCGCTGCCACAACCCTCGGTAT
256 GGGGATCGACCCGATCCCCCTCTGCGTGCTGTAGGTCCCGCTACCACAACCCTCGGTAT
*
29739456 CGACTGGGCCTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTA
1 -GACTGGG---GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
* * *
29739521 CGGGTGCTCAACCGGTCGGAGAGGTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGT
62 CGGGTGCTCAACCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGCGT
* * * * * * *
29739586 GTTATCGATCCTACT-ACTGAAACCCTTGGTCCAATCCATTCTTAGACTGGCAATGAACCCCGTA
127 GCTGTCGATCCTGCTGTC-GCAACCCTTGGTCCAGTCCA-TCTTAGACTGG-AATGAACTCCGTA
* * * * *
29739650 TGCCTAACTCAACCCACGAAATGAGCGTGTGGGCACTGAGCTGATCGAAGAGGCATAATGTACAA
189 TGCATAACTCAACCCACGAAACGAACATGTGGGCACTGAGC-GATCGAAGAGGCAGAATGTACAA
* * *
29739715 GCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCT
253 GCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTAGGTCCCGCTACCACAACCCTCGGTAT
* * * * *
29739777 GGCTGGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACG-AACGGGCGTGCAGG
1 GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
* * * * * * * * * *
29739841 CGCTCGACTGGTCAGAGTGGCAAAATGCACTAGCCGAGGATCGGCCTGGTTCCCCCTGCGTGCTG
66 TGCTCAACCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTG
* *
29739906 TCGATCCTGCTGTCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
131 TCGATCCTGCTGTCGCAACCCTTGGTCCAGTC-CATCTTAGACT-GGAATGAACTCCGTATGC
29739969 TTAGACTGGG
Statistics
Matches: 428, Mismatches: 68, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
314 7 0.02
316 118 0.28
317 222 0.52
318 2 0.00
319 3 0.01
320 56 0.13
321 20 0.05
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (314 bp):
GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
TGCTCAACCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTG
TCGATCCTGCTGTCGCAACCCTTGGTCCAGTCCATCTTAGACTGGAATGAACTCCGTATGCATAA
CTCAACCCACGAAACGAACATGTGGGCACTGAGCGATCGAAGAGGCAGAATGTACAAGCCGGGGA
TCGACCCGATCCCCCTCTGCGTGCTGTAGGTCCCGCTACCACAACCCTCGGTAT
Found at i:29739978 original size:26 final size:26
Alignment explanation
Indices: 29739942--29739994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29739932 CCAGTCTGAT
*
29739942 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29739968 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29739994 C
1 C
29739995 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29740292 original size:26 final size:26
Alignment explanation
Indices: 29740263--29740315 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29740253 GTGGTCCGAT
29740263 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29740289 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29740315 C
1 C
29740316 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29740649 original size:159 final size:158
Alignment explanation
Indices: 29740288--29740790 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 158
29740278 AACTCCGTAT
* *
29740288 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGC-ATGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGA-GCGCTCA
* * * ** * * * * **
29740352 GTCAACCAGAGAGGCAGAATGCGCAAGCTAGGGACCGGACCGATCCCCCCTGCGTTCTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTACCGATC
** ** * * *
29740417 CTGCTACTGCAATCCTCGGTCCGGTCTGA
130 CCACTACCACAACCCCCGGTCCAGTCTGA
* * * * * * *
29740446 TCTTAGAC-TGGCGATGAACACCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCA
* * * *
29740510 GCCGACCGGGGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTTGTGTGCTACCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGTGTGCTACCGAT
* *
29740575 CCCACTGCCACAACCCCCGGTCCAG-CTGGG
129 CCCACTACCACAACCCCCGGTCCAGTCT-GA
* * *
29740605 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCAG
* * * * **
29740670 CTGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGATCCCCCCTGTGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTACCGATCC
** * * * *
29740735 TGCTACCGCAAACCTCGGTCCAGTCAGA
131 CACTACCACAACCCCCGGTCCAGTCTGA
* *
29740763 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
29740791 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 62, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 4 0.01
158 147 0.53
159 122 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTACCGATCC
CACTACCACAACCCCCGGTCCAGTCTGA
Found at i:29747377 original size:26 final size:26
Alignment explanation
Indices: 29747337--29747408 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
29747327 GGCTCAAAAT
29747337 CTTAGAC-TGGTAATGAACTCCGTTTG
1 CTTAGACATGG-AATGAACTCCGTTTG
29747363 CTTAGACATGGAATGAACTCCGTTTG
1 CTTAGACATGGAATGAACTCCGTTTG
*
29747389 CTTACACATGGAATGAACTC
1 CTTAGACATGGAATGAACTC
29747409 TGTATGACTA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 41 0.93
27 3 0.07
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTTTG
Found at i:29747893 original size:26 final size:26
Alignment explanation
Indices: 29747864--29747916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29747854 CCGATCTGAT
*
29747864 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29747890 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29747916 C
1 C
29747917 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29748259 original size:26 final size:26
Alignment explanation
Indices: 29748218--29748270 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29748208 TCGGTTCGAT
29748218 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29748244 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29748270 C
1 C
29748271 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29748580 original size:26 final size:26
Alignment explanation
Indices: 29748542--29748594 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29748532 CTGATCCTAT
**
29748542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
29748568 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
29748594 C
1 C
29748595 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:29749093 original size:26 final size:26
Alignment explanation
Indices: 29749055--29749107 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29749045 CCGGTCCGAT
29749055 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29749081 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29749107 C
1 C
29749108 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29749457 original size:515 final size:512
Alignment explanation
Indices: 29748345--29749532 Score: 1428
Period size: 513 Copynumber: 2.3 Consensus size: 512
29748335 GTTGGTCCTA
* * * * ***
29748345 CTACCATAACCCTCGGTCCGACTGAGGCTTAGATATGGAATGAACTTTGTATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
29748410 CACGAAATGAGTGTGCGGGCGCTCAGTCGATCGGAAAGGCAAAATGCGCAAGCCGGGGATCAGCC
66 CACGAAATGGGCGTACGGGCGCTCAGTCG-TCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCC
* * * * * *
29748475 CGATCCCCCCTACGTGCTGTCAATCCTACTGCTGGTCCGGCTGCCGCAACCGTCAGTCTGATCCT
130 CGATCCCCCCTACGTGCTGTCAATCCTACTACTGGTCAGGCTGCCACAACCCTCAGTCCGATCCG
* *
29748540 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAAC
195 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCTATATGCCTAAGCCAAC
* ** * * ** *
29748605 CCACAAAATGAGTGTGTAGGTGCTCAGCAGGTCGAAAAGGCAGAATGCACAAGTCGGGGATCGGC
260 CCACAAAACGAGCATGCAGGCGCTCAGCAGACCGAAAAGGCAGAATGCACAAGACGGGGATCGGC
* * * *
29748670 CCGATCCTCCCTACGTGCTATCGATCCTACTGCAGGAACCCTCGGTCCAGTCCAATCTTAGACTG
325 CCGATCCCCCCTACGTGCTATCGATCCTACTACAGCAACCCTCCGTCCAGTCCAATCTTAGACTG
* * *
29748735 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTACGGACTCTGAGCCAGTCGGAG
390 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATCAACGTACGGACGCTGAGCCAGTCGGAA
* * *
29748800 AGGCATAATACGCAAGCTGGGGATCGACCCGATCCCCCTCTGCATGCTACCGGTCCCG
455 AGGCATAATACGCAAGCCGGGCATCGACCCGATCCCCCTCTACATGCTACCGGTCCCG
* * * * *
29748858 CTACCACAACCCTCGGTCTGGCTAGGGCTCAGACATGGAATGAACTCCCTATGCCTCAGCCAACT
1 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * *
29748923 AATGAAATGGGCGTACGGGCGCTCAGCCAGTTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCT
66 CACGAAATGGGCGTACGGGCGCTCAGTC-GTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCC
* * * * * *
29748988 TGGTCCCCCCTACGTGCTGTCGATCCTACTACTGGTCATGTTGCCACAACCCTC-GATCCGGTCC
130 CGATCCCCCCTACGTGCTGTCAATCCTACTACTGGTCAGGCTGCCACAACCCTCAG-TCCGATCC
*
29749052 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAA
194 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCTATATGCCTAAGCCAA
* * * * * * *
29749117 CCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGACGTGGATCGG
259 CCCACAAAACGAGCATGCAGGCGCTCAGCAGACCGAAAAGGCAGAATGCACAAGACGGGGATCGG
* * * * * *
29749182 CCCGATCCCCCCTGCGTTCTCTGTCGATCCTGCTACCGCAACCCTCCGTCC-GATCCGATCTTAG
324 CCCGATCCCCCCTACG-T-GCTATCGATCCTACTACAGCAACCCTCCGTCCAG-TCCAATCTTAG
* * *
29749246 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CAAGCGTCCGGGCGCTGAGCCAGT
386 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATCAA-CGTACGGACGCTGAGCCAGT
** * * ** * *
29749310 CGGAAAGGCATAATGTGCAAGCCGGGCATCGGCCCGGTCCCCCTCTATGTGCTGCTGGTCCCG
450 CGGAAAGGCATAATACGCAAGCCGGGCATCGACCCGATCCCCCTCTACATGCTACCGGTCCCG
* ** *
29749373 CTGCCACAACCCTCTATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACC
1 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * *
29749438 CACGGAATGGGCGTACGGGCGCTCAGTCGGCCGGAGAGGCAAAATACGTAAGCCGGGGATCGGCC
66 CACGAAATGGGCGTACGGGCGCTCAGTC-GTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCC
* * * ** *
29749503 CAATCCCTCTTGTGTGCTGCCAATCCTACT
130 CGATCCCCCCTACGTGCTGTCAATCCTACT
29749533 GCCGCAACCC
Statistics
Matches: 558, Mismatches: 111, Indels: 10
0.82 0.16 0.01
Matches are distributed among these distances:
512 1 0.00
513 280 0.50
514 5 0.01
515 272 0.49
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (512 bp):
CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAATGGGCGTACGGGCGCTCAGTCGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCC
GATCCCCCCTACGTGCTGTCAATCCTACTACTGGTCAGGCTGCCACAACCCTCAGTCCGATCCGA
TCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCTATATGCCTAAGCCAACC
CACAAAACGAGCATGCAGGCGCTCAGCAGACCGAAAAGGCAGAATGCACAAGACGGGGATCGGCC
CGATCCCCCCTACGTGCTATCGATCCTACTACAGCAACCCTCCGTCCAGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATCAACGTACGGACGCTGAGCCAGTCGGAAA
GGCATAATACGCAAGCCGGGCATCGACCCGATCCCCCTCTACATGCTACCGGTCCCG
Found at i:29749478 original size:159 final size:158
Alignment explanation
Indices: 29749080--29749509 Score: 409
Period size: 159 Copynumber: 2.7 Consensus size: 158
29749070 AACTCCATAT
* * *
29749080 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
29749145 CCGACCGGAGAGGCAGAATGCGCAAGACGTGGATCGGCCCGATCCCCCCTGCGTTCTCTGTCGAT
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCG-GGATCGGCCCGATCCCCCCTACGTGCTCTG-CGAT
* * *
29749210 CCTGCTACCGCAACCCTCCGTCCGATCCGA
129 CCCGCTACCACAACCCTCCATCCGATCCGA
* * * * * * *
29749240 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTCCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * *
29749304 GCCAGTCGGAAAGGCATAATGTGCAAGCCGGGCATCGGCCCGGTCCCCCTCTATGTGCTGCTG-G
65 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGG-ATCGGCCCGATCCCCC-CTACGTGCT-CTGCG
* * * * *
29749368 -TCCCGCTGCCACAACCCTCTATCCG-GCTGGG
127 ATCCCGCTACCACAACCCTCCATCCGATC-CGA
* * * * *
29749399 GCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCACGGAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
29749464 TCGGCCGGAGAGGCAAAATACGTAAGCCGGGGATCGGCCCAATCCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCC-GGGATCGGCCCGATCCC
29749510 TCTTGTGTGC
Statistics
Matches: 214, Mismatches: 49, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
158 1 0.00
159 108 0.50
160 96 0.45
161 6 0.03
162 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGATCGGCCCGATCCCCCCTACGTGCTCTGCGATCC
CGCTACCACAACCCTCCATCCGATCCGA
Found at i:29755048 original size:26 final size:26
Alignment explanation
Indices: 29754984--29755050 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
29754974 TAGTCTGGGA
*
29754984 ATGAACTCCATATGCTTAAACTAGGG
1 ATGAACTCCGTATGCTTAAACTAGGG
*
29755010 ATGAACTCCGTATGCTTAGACTAGGG
1 ATGAACTCCGTATGCTTAAACTAGGG
*
29755036 ATGAACTCTGTATGC
1 ATGAACTCCGTATGC
29755051 CTAAGTCAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAAACTAGGG
Found at i:29755376 original size:26 final size:26
Alignment explanation
Indices: 29755340--29755392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29755330 CCGGTCCGAT
29755340 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
29755366 CTTAGGCTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29755392 C
1 C
29755393 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29756502 original size:600 final size:600
Alignment explanation
Indices: 29755339--29756537 Score: 1909
Period size: 600 Copynumber: 2.0 Consensus size: 600
29755329 TCCGGTCCGA
* * *
29755339 TCTTAGACTGGGAATGAACTCCATATGCTTAGGCTGGGTATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
*
29755404 CATGAAACGAGCGTGCGGGCGCTCAACCAACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAACG
66 CACGAAACGAGCGTGCGGGCGCTCAACCAACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAACG
* *
29755469 GGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTATCGTGCCAATGCCATTTTTATGGCTTGT
131 GGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCGTGCCAATGCCATTTATATGGCTTGT
*
29755534 AAATTCATACAATGGTCTCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCATTTTCTATT
196 AAATTCATACAATGGTCCCTAAGCCTTCATGTGAAGTTTCATGGC---ACG---C-TTTTCTATT
*
29755599 TTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGT
254 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGT
* *
29755664 CCCCAAATTTGTTAGAGGTGATCCTTGTATTTTTCTTGGCATGCATAAACAAATTCAGCTAAAAA
319 CCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAA
** *
29755729 CTCGAAGTGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAAACATTTTAATGGC
384 CTCGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGC
* * *
29755794 TACTGGTAGCAAACCTATAAAATCTGAAATGCTCTTTGAGGGGCTATGAGTTCTCGAGGTTTGAT
449 TACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGAT
29755859 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
514 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
29755924 CCCGCCTCCCCAATCTGAAATGC
579 CCCGCC-CCCCAATCTGAAATGC
* ***
29755947 TCTTTGACTAGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * **
29756012 CACGAAATGAGTGTGCGGGTGCTCAACTGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAAC
66 CACGAAACGAGCGTGCGGGCGCTCAACCAACCAGAGAGGCAGGATGCGCAAGCCGGGGATC-AAC
* * *
29756077 GGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTTTGCCTTGCCAATGCCATTTATATGGCTTG
130 GGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCGTGCCAATGCCATTTATATGGCTTG
29756142 TAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCAT-GC-CG-TTTTCTATTTTTCA
195 TAAATTCATACAATGGT-CCCTAAGCCTTCATGTGAAGTTTCATGGCACGCTTTTCTATTTTTCA
* *
29756204 TGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGATTTTTGTCCCCA
259 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCA
*
29756269 AATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
324 AATTTGGTAGAGGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
*
29756334 AGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
389 AGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG
* * * * *
29756399 GCAGCAAACCTATAAAATCTCAAGTGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGT
454 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGATGAGGG
* * * * *
29756464 ATAGGGGGCCAATATATGGGTCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCGGC
519 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGC
29756529 CCCCCAATC
584 CCCCCAATC
29756538 GTTGGAACCC
Statistics
Matches: 547, Mismatches: 42, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
599 8 0.01
600 317 0.58
605 2 0.00
608 113 0.21
609 82 0.15
610 25 0.05
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (600 bp):
TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAACCAACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAACG
GGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCGTGCCAATGCCATTTATATGGCTTGT
AAATTCATACAATGGTCCCTAAGCCTTCATGTGAAGTTTCATGGCACGCTTTTCTATTTTTCACG
ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAA
TTTGGTAGAGGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAG
TGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC
AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCTATGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCC
CCCAATCTGAAATGC
Found at i:29761095 original size:159 final size:157
Alignment explanation
Indices: 29760759--29761244 Score: 582
Period size: 159 Copynumber: 3.1 Consensus size: 157
29760749 GCTTAGGCAT
* * ** *
29760759 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAATCGGTCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCACTCAGCCGATCGGAG
* * * *
29760824 AGGTAAAATGCGTAAGCCGAGGA-CTGACCCGAT-CCCCCTGCGTGCTGTCGATCCTACTGTCGT
65 AGGCAAAATGCGCAAGCCGAGGATC-GACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGC
* *
29760887 AACCCTCGGTCTGGTTCGATCTTAGACTA
129 AACCCTCGGTCCGATTCGATCTTAGACTA
* * *
29760916 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGTGCGTACGGGCACTGAGCCGATCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCACTCAGCCGATCGGAG
* * * * * ** *
29760981 AGGCATAATGGGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
65 AGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTACTGCCGC
* * *
29761046 AACCCTCGGTCCGATTGGAGCTTACAC-A
129 AACCCTCGGTCCGATTCGATCTTAGACTA
* * *
29761074 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGCGCTCAGCCGATCGGA
1 -GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGG-CGTGCGGGCACTCAGCCGATCGGA
* * * * *
29761139 GAGGCAGAATGCGCAAGCCAAGGATCGGCCTGATCCCCCCTGCGTGTTGTCGATCCTACTGCCGC
64 GAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGC
* *
29761204 AACCCTCGATTCGATTCGATCTTAGACTA
129 AACCCTCGGTCCGATTCGATCTTAGACTA
29761233 GGAATGAACTCC
1 GGAATGAACTCC
29761245 GTGTGCTTAG
Statistics
Matches: 274, Mismatches: 49, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
157 81 0.30
158 62 0.23
159 131 0.48
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCACTCAGCCGATCGGAGA
GGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAA
CCCTCGGTCCGATTCGATCTTAGACTA
Found at i:29762562 original size:18 final size:18
Alignment explanation
Indices: 29762539--29762575 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
29762529 CCCTTAGTCT
*
29762539 GGTCGGATGTTAGACTAG
1 GGTCGGAGGTTAGACTAG
29762557 GGTCGGAGGTTAGACTAG
1 GGTCGGAGGTTAGACTAG
29762575 G
1 G
29762576 AATGAACTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.43, T:0.24
Consensus pattern (18 bp):
GGTCGGAGGTTAGACTAG
Found at i:29762918 original size:26 final size:26
Alignment explanation
Indices: 29762882--29762934 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29762872 CCGGACCGAT
29762882 CTTAGACTGGGAATGAACTCT-GTATG
1 CTTAGACTGGGAATGAACT-TAGTATG
*
29762908 CTTAGACTGGGGATGAACTTAGTATG
1 CTTAGACTGGGAATGAACTTAGTATG
29762934 C
1 C
29762935 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTAGTATG
Found at i:29763311 original size:26 final size:26
Alignment explanation
Indices: 29763261--29763312 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29763251 CCGGTCTGAT
*
29763261 CTTAGACTGGGAATGAGCTCAGTATG
1 CTTAGACTGGGAATGACCTCAGTATG
29763287 CTTAGACAT-GGAATGAACCTC-GTATG
1 CTTAGAC-TGGGAATG-ACCTCAGTATG
29763313 GCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGACCTCAGTATG
Found at i:29764165 original size:184 final size:184
Alignment explanation
Indices: 29763975--29764336 Score: 499
Period size: 184 Copynumber: 2.0 Consensus size: 184
29763965 GTTGGGGCTC
** * *
29763975 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTTTGGGCACTCAGCCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGA
* * * * * * *
29764040 TTGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTTGCGTGCTACCGATCCTGCT
66 TCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTGCGTACTACCGATCCTACT
* * * *
29764105 GCCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTTTGCTT
131 ACCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTTTGCTT
* **
29764159 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAACCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGA
* * *
29764224 TCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCCGATCCCCCTTGTGTACTATCGATCCTACT
66 TCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTGCGTACTACCGATCCTACT
* * * *
29764289 ATCGGAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAACTCCGT
131 ACCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGT
29764337 ATGCCTAAGT
Statistics
Matches: 153, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
184 153 1.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGA
TCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTGCGTACTACCGATCCTACT
ACCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTTTGCTT
Found at i:29764493 original size:869 final size:875
Alignment explanation
Indices: 29762566--29764564 Score: 2477
Period size: 880 Copynumber: 2.3 Consensus size: 875
29762556 GGGTCGGAGG
* * * * *
29762566 TTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGTGCGCTGTGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCC
* * * * *
29762631 GATCGAAGAGGCATAATGTGCAAG-CTGGGGATCGGCCCGATCACCCTTTGCGTGCTGCCTGTCC
66 GATCGGAGAGGCATAATGAGCAAGTC-GGGGATCGGCCCGATCCCCCTTTGCATGCTGCCAGTCC
* *
29762695 CGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAA
130 CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
29762760 CCCACGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCTGAGATTGG
195 CCCACGAAACGGGCA-GCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGG
* * * * * *
29762825 TCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTTGGTCCGGACCGATCTTAGACT
259 CCCGATCCCCCCTGCGTGCTACCAATCCTGCTACCACAACCCTCGGTCCGGACCGATCTTAGACT
* * * * *
29762890 GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTAGTATGCCTAAGTCTACCCACGAAACG
324 GGGAATGAACTCCGTATGCCTAGACTAGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAACG
** * * * *
29762955 AGCGTGCGGGCACTCAGTCGGCCAGAGAGGTCGATCGGAGAGGCATAACGCGCAAGCTGAGGATC
389 AGCGTGCGGGCACTCAACCGACCAGAGAGGTCGATCGAAGAGGCATAACGCGCAAGCCGAGGATA
* ** *
29763020 AGCCCGGTCCCTCTCTGCGTGCTGTCGATCCCACTGTTGATCCTGCTGCCACAACCCTCAGTCTG
454 AGCCCGGTCCCTCTCTGCGTGCTGCCGATCCCACTGCCGATCCAGCTGCCACAACCCTCAGTCTG
* * **
29763085 GTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGC
519 GTTGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGC
* *
29763150 GCTCAGCCATTCGAAGAGGCAAAATGCATAAGCCAGGGATCGGCCTGGTCCCGTCGCGTGCTATC
584 ACTCAGCCATTCGAAGAGGCAAAATGCACAAGCCAGGGATCGGCCTGGTCCCG-CGC--GCTATC
* * * * *
29763215 GATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAGCT
646 GA-CCTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT
*
29763280 CAGTATGCTTAGACATGGAATGAACCTCGTATGGCTAAGCCAACCCACGAAAAGAGCGTGCGGGC
710 CAGTATGCTTAGACATGGAATGAACCTCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGC
* * * *
29763345 GCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGTTGGGGATCGACCCGATCCCCCCTGCGTTCTAT
775 GCTCAACCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTACTAT
* * * *
29763410 CGATCTTGCTACCATAACCATCGGTCCAGTCCGATC
840 CGATCCTACTACCAGAACCATCGGTCCAGTCCAATC
* * * * *
29763446 TTAGACTGGAAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGCGGGCCCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCC
* * * * *
29763511 GATGGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCTTTTGCATGCTAG-CAGTCC
66 GATCGGAGAGGCATAATGAGCAAGTCGGGGATCGGCCCGATCCCCCTTTGCATGCT-GCCAGTCC
* * *
29763575 TGCTGCCACAACCCTCGATCCGACTGGGGCGTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
29763640 CCCATGAAACGGGCGAGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGGTCGG
195 CCCACGAAACGGGC-AGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGG
* * ** * * *
29763705 CCCGATCCCCCCTGCGTGCTGCCAATCTTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGATT
259 CCCGATCCCCCCTGCGTGCTACCAATCCTGCTACCACAACCCTCGGTCCGGACCGATCTTAGACT
* * *
29763770 GGGAATGAACTCCGTATGCCTAGACTATGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
324 GGGAATGAACTCCGTATGCCTAGACTAGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * * *
29763835 AGCGTGTGGGCGCTCAACCGACCGGAGAGG-CTGGTCGAAGATGTATAATGCGTAAGCCGGGGAT
389 AGCGTGCGGGCACTCAACCGACCAGAGAGGTC-GATCGAAGAGGCATAACGCGCAAGCCGAGGAT
* * * * *
29763899 AAGCCCGAT-TCTCCTCTGCGTGCTGCCGATGCCGA-TGCCGGTCCAGCTGCCACAACCCTCGGT
453 AAGCCCGGTCCCT-CTCTGCGTGCTGCCGAT-CCCACTGCCGATCCAGCTGCCACAACCCTCAGT
**
29763962 -TCGGTTGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTTT
516 CT-GGTTGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGC
* * * * * * *
29764026 GGGCACTCAGCCGGTT-GGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCTGGT-CC-C-C-CT-
580 GGGCACTCAGCC-ATTCGAAGAGGCAAAATGCACAAGCCAGGGATCGGCCTGGTCCCGCGCGCTA
* **
29764085 T-G-CGTGCTACCGATCCTGCTGCCGCAACCCTC-AGTTTGGTCCGATCTTAGACTGGGAATGAA
644 TCGACCTGCTACCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAA
* * *
29764147 CTCCGTTTGCTTAGACATGGAATGAA-CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
708 CTCAGTATGCTTAGACATGGAATGAACCT-CGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCG
* * * *
29764211 GGCGTTCAACCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATC-AGCCCGATCCCCCTTGTGTA
772 GGCGCTCAACCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGA-CCCGATCCCCCCTGCGTA
* * * * *
29764275 CTATCGATCCTACTATCGGAACCCTCGGT-CTGATCTAATC
836 CTATCGATCCTACTACCAGAACCATCGGTCCAG-TCCAATC
* *
29764315 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGCT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCC
** * * * *
29764380 GGCCGGAGAGGCATAATGAGCAAGTCGGGGATTGGCCCGGTCCCCCTCTGCATGCTGCCGGTCCC
66 GATCGGAGAGGCATAATGAGCAAGTCGGGGATCGGCCCGATCCCCCTTTGCATGCTGCCAGTCCC
* * *
29764445 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAC
131 GCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
29764510 CCACGAAACGGGCCTGCAGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCC
196 CCACGAAACGGG-CAGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCC
29764565 AAGGATCGGC
Statistics
Matches: 955, Mismatches: 150, Indels: 39
0.83 0.13 0.03
Matches are distributed among these distances:
868 7 0.01
869 405 0.42
870 1 0.00
871 1 0.00
872 1 0.00
873 2 0.00
876 1 0.00
877 1 0.00
879 6 0.01
880 522 0.55
881 8 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (875 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCC
GATCGGAGAGGCATAATGAGCAAGTCGGGGATCGGCCCGATCCCCCTTTGCATGCTGCCAGTCCC
GCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCAGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGGCC
CGATCCCCCCTGCGTGCTACCAATCCTGCTACCACAACCCTCGGTCCGGACCGATCTTAGACTGG
GAATGAACTCCGTATGCCTAGACTAGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCACTCAACCGACCAGAGAGGTCGATCGAAGAGGCATAACGCGCAAGCCGAGGATAAG
CCCGGTCCCTCTCTGCGTGCTGCCGATCCCACTGCCGATCCAGCTGCCACAACCCTCAGTCTGGT
TGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCAC
TCAGCCATTCGAAGAGGCAAAATGCACAAGCCAGGGATCGGCCTGGTCCCGCGCGCTATCGACCT
GCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCAGTAT
GCTTAGACATGGAATGAACCTCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTACTATCGATCC
TACTACCAGAACCATCGGTCCAGTCCAATC
Found at i:29764518 original size:159 final size:158
Alignment explanation
Indices: 29764155--29764562 Score: 390
Period size: 159 Copynumber: 2.6 Consensus size: 158
29764145 AACTCCGTTT
* * **
29764155 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCACTCAA
* * ** *
29764220 CCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCCGATCCCCCTTGTGTACTATCGATCC
66 CCGACCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGATCCCCCTTGCATACTACCGATCC
* * ** *
29764285 TACTATCGGAACCCTCGGTCTGATCTAA
131 CACTACCACAACCCTCGGTCCGATCTAA
* * *
29764313 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-TCAACCCATGAAACGAGCATGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCATGCGGGCACTC
* * * * ** * * * *
29764376 AGCTGGCCGGAGAGGCATAATGAGCAAGTCGGGGATTGGCCCGGTCCCCCTCTGCATGCTGCCGG
64 AACCGACCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGATCCCCCT-TGCATACTACCGA
* * * **
29764441 TCCCGCTGCCACAACCCTCGGTCCGGT-TGGG
128 TCCCACTACCACAACCCTCGGTCCGATCT-AA
* * * * * *
29764472 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCCTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCACTCAA
* * *
29764537 CCGATCGGAGAGGCAAAATGCGCAAG
66 CCGACCGGAGAGGCAGAATGAGCAAG
29764563 CCAAGGATCG
Statistics
Matches: 199, Mismatches: 45, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 96 0.48
159 100 0.50
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCACTCAA
CCGACCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGATCCCCCTTGCATACTACCGATCC
CACTACCACAACCCTCGGTCCGATCTAA
Found at i:29764938 original size:26 final size:26
Alignment explanation
Indices: 29764900--29764952 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29764890 GGCTTAAAAT
29764900 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
*
29764926 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCGGTATG
29764952 C
1 C
29764953 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:29765404 original size:158 final size:157
Alignment explanation
Indices: 29764926--29765426 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 157
29764916 ACTCGGTATG
* * *
29764926 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *** *
29764990 -CTAACTGGAGAGGCAAAATGCGCAAGCAGGTGATTGGTTTGGTCCCCCCTGCGTTCTGTCGATC
65 TC-GACTGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
*
29765054 CTGTTGCTGCAACCCTC-AGTCCAGTCTGAT
129 CTGTTGCAGCAACCCTCGA-TCCAGTC-GAT
* * * * * * *
29765084 CTTAGACTGGGAATGAACTTCGTACGCATAAGTCAATCCACGAAACGAGCATGCGGGCGCTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * * *
29765149 CGGCCGAAGAGCCATAATGCCCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTG-CTGGTC
66 CGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTC-GATC
* * * * * * **
29765213 CCGCTGCCA-CAA-CCTTGGTCCGACTGGGG
129 CTGTTG-CAGCAACCCTCGATCC-AGTCGAT
* * * * *
29765242 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAATCGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
29765306 TCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATACCACCTACGTGCTGTCGATCC
65 TCGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
29765371 TGTTGCAGCAACCCTCGATCCAGTTCGAT
130 TGTTGCAGCAACCCTCGATCCAG-TCGAT
* *
29765400 CTTAGACTGGGAATGCACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
29765427 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 70, Indels: 26
0.73 0.20 0.07
Matches are distributed among these distances:
156 2 0.01
157 21 0.08
158 214 0.82
159 22 0.08
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GTTGCAGCAACCCTCGATCCAGTCGAT
Found at i:29765429 original size:26 final size:26
Alignment explanation
Indices: 29765400--29765452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29765390 CCAGTTCGAT
*
29765400 CTTAGACTGGGAATGCACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29765426 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29765452 C
1 C
29765453 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29773143 original size:26 final size:26
Alignment explanation
Indices: 29773114--29773166 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29773104 CTGATTTAAT
29773114 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCTGTATG
29773140 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGATGAACTCTGTATG
29773166 C
1 C
29773167 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCTGTATG
Found at i:29773326 original size:26 final size:26
Alignment explanation
Indices: 29773297--29773349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29773287 CCGATCCAAT
*
29773297 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29773323 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29773349 C
1 C
29773350 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29773398 original size:183 final size:183
Alignment explanation
Indices: 29772968--29773400 Score: 487
Period size: 183 Copynumber: 2.4 Consensus size: 183
29772958 TAGAAATGGA
* * * *
29772968 ATGAACTCCCTATGCCTAAGCCAACCCACGAAAT-AGGCGTGCAGGCGCTTAGCTGACCGGAGAG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAATGA-GCGTGCGGGCGCTCAGCTGACCGGAGAG
* * ** * * * * * * *
29773032 GTAGAATGCCCAAGCAGTGGATTAGCCCGATCCCCCCTGTATGCTGTCGATCTTGCTGCTGCAAT
65 GCAGAATACCCAAGCAGTGGAACAGCACGATCCCCCCTGTAT-CTATCAATCCTACTGCCGCAAC
* ** *
29773097 CCTCGGTCTGATTTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGAGG
129 CCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGG
** * * * * * * **
29773152 ATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTCAACCGTTCGGAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGACCGGAGAGG
* * *
29773217 CAGAATACGCAAGCTAG-GGAACGGCACGAT-CCCCCTACGTAT-TATCAATCCTACTGCCGTAA
66 CAGAATACCCAAGC-AGTGGAACAGCACGATCCCCCCT--GTATCTATCAATCCTACTGCCGCAA
*
29773279 CCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
128 CCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGG
*
29773335 ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGCTGACCGGAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGACCGGAGAGG
29773400 C
66 C
29773401 CGGCCAGAGA
Statistics
Matches: 202, Mismatches: 43, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
183 125 0.62
184 70 0.35
185 7 0.03
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.22
Consensus pattern (183 bp):
ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGACCGGAGAGG
CAGAATACCCAAGCAGTGGAACAGCACGATCCCCCCTGTATCTATCAATCCTACTGCCGCAACCC
TCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGG
Found at i:29773703 original size:26 final size:26
Alignment explanation
Indices: 29773665--29773717 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29773655 TCGGTCTGAT
29773665 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
29773691 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
29773717 C
1 C
29773718 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29773853 original size:184 final size:184
Alignment explanation
Indices: 29773506--29773875 Score: 417
Period size: 184 Copynumber: 2.0 Consensus size: 184
29773496 TTCAGCTGGG
** * *
29773506 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAA
** * * ** * *
29773571 TCGGTCAGAGAGGTAGAATGCGTAAGACGGGGATCGGGTCGATCCCCCCTGTGTGCTACCCATCC
66 TCGACCAGAGAGGTAGAATGCGTAAGACAGGGACCGCCTCGATCCCCCCTATGTGCTACCAATCC
* * * * **
29773636 TGCTGCTGCAACCCTTGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
131 TGCTGCTGCAAACCTTAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTAT
* *
29773690 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAA
* * * *
29773755 TCGACC-GAAGAGGTAGAATGCGTAAG-CTAGGGACCGACCT-GGTCCCTCTTATGTGCTGCCAA
66 TCGACCAG-AGAGGTAGAATGCGTAAGAC-AGGGACCG-CCTCGATCCCCCCTATGTGCTACCAA
* * *
29773817 TCCTGTTG-T-CACAACCTTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTAT
128 TCCTGCTGCTGCA-AACCTT-AGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTAT
29773874 GC
1 GC
29773876 CTAAGTCAAC
Statistics
Matches: 154, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
182 2 0.01
183 8 0.05
184 143 0.93
185 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.24
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAA
TCGACCAGAGAGGTAGAATGCGTAAGACAGGGACCGCCTCGATCCCCCCTATGTGCTACCAATCC
TGCTGCTGCAAACCTTAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:29774105 original size:159 final size:158
Alignment explanation
Indices: 29773690--29774119 Score: 420
Period size: 159 Copynumber: 2.7 Consensus size: 158
29773680 AACTCCGTAT
* *
29773690 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* * * * * * * * *
29773755 TCGACCGAAGAGGTAGAATGCGTAAGCTAGGGACCGACCTGGTCCCTCTTATGTGCTGCCAATCC
66 CCGATCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCTCTTACGTGCTACCAATCC
* * *
29773820 TGTTGTCACAACCTTCAGTCCAGTCCAA
131 TGCTGCCACAACCCTCAGTCCAGTCCAA
* * * * * * * *
29773848 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCTTTCGGGCGTTAA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCA
* ** * * * * **
29773912 GCCGATCGGAGAGGCATAATGCACAAGCCAGGGATTGGCCCGGTCCCTCTCTGCGTGCTATCGGT
65 GCCGATCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCTCT-TACGTGCTACCAAT
****
29773977 -CTGGCTGCCACAACCCTC-GATCC-GATTGGG
129 CCT-GCTGCCACAACCCTCAG-TCCAG-TCCAA
*
29774007 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCA
* * *
29774071 GCCGATCGGAGAGGCAGAATGTGTAAGCTGGGGATCGGCCCGATCCCTC
65 GCCGATCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCTC
29774120 CAATGCTGCC
Statistics
Matches: 214, Mismatches: 51, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 95 0.44
159 115 0.54
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
CCGATCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCTCTTACGTGCTACCAATCC
TGCTGCCACAACCCTCAGTCCAGTCCAA
Found at i:29774193 original size:26 final size:26
Alignment explanation
Indices: 29774164--29774216 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29774154 CCGGTCCGAT
29774164 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
29774190 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
29774216 C
1 C
29774217 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:29774758 original size:26 final size:26
Alignment explanation
Indices: 29774729--29774784 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
29774719 CTGGTTCGAT
*
29774729 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29774755 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29774781 CTTA
1 CTTA
29774785 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29774876 original size:185 final size:185
Alignment explanation
Indices: 29774522--29774906 Score: 486
Period size: 185 Copynumber: 2.1 Consensus size: 185
29774512 TCCTACTACT
* *
29774522 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATATGGAATAAA
1 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATAGGGAATAAA
* * *
29774587 CTCCGTATGCCTAAGCCAATCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGGTAGAA
66 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGATCGGAGAGGTAGAA
* * * * * * *
29774652 TGCGCAAGCTGGGGACCGACCTGGTCCCCCCCAACGTGCTGTCAATCCTGCTGCC
131 TGCACAAGCTGAGGACCAACCCGATCCCCCCCAACGTGCTGCCAATCCCGCTGCC
* * * *
29774707 GCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GGGGATGA
1 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-TAGGGAATAA
* * * * *
29774771 ACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGGTCGGAGAGGTAGA
65 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGATCGGAGAGGTAGA
* * * * *
29774836 ATGCACAA-ATCGAGGATCAACCCGATCCCCCTCTACGTGCTGCCAGTCCCGCTGCC
130 ATGCACAAGCT-GAGGACCAACCCGATCCCCCCCAACGTGCTGCCAATCCCGCTGCC
* *
29774892 ACAACCCTCGGTCCG
1 GCAACCCTCAGTCCG
29774907 ACTGGGGCTT
Statistics
Matches: 169, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 1 0.01
185 167 0.99
186 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (185 bp):
GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATAGGGAATAAA
CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGATCGGAGAGGTAGAA
TGCACAAGCTGAGGACCAACCCGATCCCCCCCAACGTGCTGCCAATCCCGCTGCC
Found at i:29775772 original size:26 final size:26
Alignment explanation
Indices: 29775697--29775774 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
29775687 GGCTCAAAAT
* *
29775697 CTTAGAC-TGGGAAAGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29775723 CTTAGACATGCAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
29775749 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29775775 GCTAAGAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 45 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29776043 original size:159 final size:158
Alignment explanation
Indices: 29775748--29776177 Score: 443
Period size: 159 Copynumber: 2.7 Consensus size: 158
29775738 AACTCCGTAT
* * *
29775748 GCTTAGACATGGAATGAACTTCGTATGGCTAAGAAAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTAT-GCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
29775813 CCGGCCGGAGAGGCAAAATGTGCAAACCGGGGATTGGCCCAATCCCCCCCTATGTGCTGTCGATC
65 CCGGCCGAAGAGGCAAAATGTGCAAGCCGGGGATCGACCCAATCCCCCCCAACGTGCTATCGATC
**
29775878 CTGCTGCTGCAACCCTCGGTCCGATTCGA
130 CTGCTGCCACAACCCTCGGTCCGATTCGA
* * * * *
29775907 TCTTAGACTTGGAATGAACTCCGTATGCATAAGTCAATCCATGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACTTGGAATGAACTCCGTATGC-TAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * *
29775972 CTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTGATCCCCCTCAACGTGCTATCGGT-
65 CCGGCCGAAGAGGCAAAATGTGCAAGCCGGGGATCGACCCAATCCCCCCCAACGTGCTATCGATC
* * * *
29776036 CTCGCTGCCACAACCCTTGGTCCGGTTGGG
130 CT-GCTGCCACAACCCTCGGTCCGATTCGA
* * * * * *
29776066 GCTTAGACATT-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGGCGCTCA
1 GCTTAGAC-TTGGAATGAACTCCGTATG-CTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** *
29776130 GCCGGCC-AGAGAGGCAGAATGTGCAAGCCAAGGATCGACCCAGTCCCC
64 GCCGGCCGA-AGAGGCAAAATGTGCAAGCCGGGGATCGACCCAATCCCC
29776178 TCTGCGTGCT
Statistics
Matches: 220, Mismatches: 46, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
158 5 0.02
159 212 0.96
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACTTGGAATGAACTCCGTATGCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAAAATGTGCAAGCCGGGGATCGACCCAATCCCCCCCAACGTGCTATCGATCC
TGCTGCCACAACCCTCGGTCCGATTCGA
Found at i:29776263 original size:26 final size:26
Alignment explanation
Indices: 29776225--29776277 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29776215 CTGGTCCAAT
29776225 CTTAGACTAGGAATGAACTTCC-TATG
1 CTTAGACTAGGAATGAAC-TCCATATG
*
29776251 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
29776277 C
1 C
29776278 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29776630 original size:26 final size:26
Alignment explanation
Indices: 29776592--29776644 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29776582 CTGGTCTGAT
*
29776592 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29776618 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
29776644 C
1 C
29776645 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29777066 original size:159 final size:157
Alignment explanation
Indices: 29776617--29777070 Score: 422
Period size: 159 Copynumber: 2.9 Consensus size: 157
29776607 AACTCCGTAT
* * **
29776617 GCTTAGACATGGAATAAACTCCGTATGCCAAAGCCAACCCACCTAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAG-GCTCAG
* * *
29776682 CCGATCGGAGAGGCAGAATAGGCAAGCCGGGGACCAG-CCCAGTCCCCCC-TGCGTACTGTCGAT
65 CCGATCGGAGAGGCAGAAT-GGCAAGCCGGGGA-TAGACCCGGTCCCCCCTTGCGTGCTGTCGAT
*
29776745 CCTGCTACCACAACCCTCGAGCCGATCTGA
128 CCTGCTGCCACAACCCTCGAGCCGATCTGA
* * * *
29776775 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAA-CTCAACCCACGAAACAAGCGT-CCAGGCACT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGAGG--CT
* * * * * * * * * *
29776837 GAGCC-AGTCAGAGAGGCATAATGCGCAGGCCAGGGATCGACCCGATCCCCCTTTGCATGCT-AC
62 CAGCCGA-TCGGAGAGGCAGAATG-GCAAGCCGGGGATAGACCCGGTCCCCCCTTGCGTGCTGTC
* *
29776900 CAGTCCTGCTGCCACAACCCTCG-GTCCGA-CTGGG
125 GA-TCCTGCTGCCACAACCCTCGAG-CCGATCT-GA
* * * * * *
29776934 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGAGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAG-GCTCAG
* * *
29776999 CCGACCGGAGAGGCAGAATGTGCAAGCTGGGGATAGACACGGTCCCCCCTTGCGTGCTGTCGATC
65 CCGATCGGAGAGGCAGAATG-GCAAGCCGGGGATAGACCCGGTCCCCCCTTGCGTGCTGTCGATC
29777064 CTGCTGC
129 CTGCTGC
29777071 TGGTCTGACT
Statistics
Matches: 230, Mismatches: 49, Indels: 33
0.74 0.16 0.11
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 85 0.37
159 128 0.56
160 7 0.03
161 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGGCTCAGC
CGATCGGAGAGGCAGAATGGCAAGCCGGGGATAGACCCGGTCCCCCCTTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGAGCCGATCTGA
Found at i:29777135 original size:26 final size:26
Alignment explanation
Indices: 29777106--29777158 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29777096 CCGGTCTGAT
29777106 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29777132 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29777158 C
1 C
29777159 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29777232 original size:514 final size:510
Alignment explanation
Indices: 29776383--29777725 Score: 1534
Period size: 514 Copynumber: 2.6 Consensus size: 510
29776373 ATCGATCCCA
* * * * **
29776383 CTACCGGTCCTGCTACCACAACCCTCGATTCGGCTAGGGCTTAGACATGGTATGAACTCTGTATG
1 CTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGTATGAACTCCCTATG
* * * * * * *
29776448 CCTAAGCCATCCCATAAAATGAGCGTGCGGGTACTCAGCC-AGCCAGAGAGGTAGAATGCGTAAG
66 CCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAG
* * ** * * *
29776512 CCAGGGATCGACCCGGTCCCCCCTGTGTGCTACCGATCTTGCTACTGGTCTGGCTGCCGTAACCT
130 CCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCT-GCT-CCGCAACC-
* * *
29776577 TTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTA
192 TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTA
* *** * * * *
29776642 TGCCAAAGCCAACCCACCTAACGAGCGTGCGAGCGCTCAGCCGATCGGAGAGGCAGAATAG-GCA
257 TGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAAT-GCGCA
* *
29776706 AGCCGGGGACCAGCCC-AGTCCCCCCTGCGTACTGTCGATCCTGCTACCA-CAACCCTCGAGCCG
321 AGCCGGGGACCAGCCCGA-TCCCCCCTACGTACTATCGATCCTGCT-CCAGCAACCCTCGAGCCG
* *
29776769 ATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCCACGAAACAAGCGTCCAGGC
384 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTCCAGGC
* *
29776834 ACTGAGCCAGTCAGAGAGGCATAATGCGCAGGCCAGGGATCGACCCGA-TCCCCCTTTGCATG
449 ACTGAGCCAGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGA-CCGAGTCCCCCTCTGCATG
* * *
29776896 CTACCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGTATGAACTCCCTATG
* * * *
29776961 CCTAAGCCAACCCATGAAATGGGCGTGTGAGTGCTCAACCGACCGGAGAGGCAGAATGTGCAAGC
66 CCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGC
* * *
29777026 TGGGGATAGACACGGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCTGGTCTGACTACCGCAATCC
131 CGGGGATCGACCCGGTCCCCCC-TGCGTGCTGTCGATCCTGCTGCTGGTCTG-CT-CCGCAA-CC
*
29777091 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTA
192 TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTA
* *
29777156 TGCCTAAGCCAACCCATGAAATC-AGCGTGCGGGCGCTTAGTCGACCGGAGAGGTAGAATGCGCA
257 TGCCTAAGCCAACCCATGAAA-CAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCA
* * * * ** **** *
29777220 AGCTGTGGACCAGCCCGATCCCCCCTACGTGCTATCTATCCTGCTGTAGCAACCCTCGTTTTGGT
321 AGCCGGGGACCAGCCCGATCCCCCCTACGTACTATCGATCCTGCTCCAGCAACCCTCGAGCCGAT
* * * * * ***
29777285 CCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGT
386 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTCCAGGCAC
* * * * *
29777350 TGAGCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCTAGTCCCCCTCTGCATG
451 TGAGCCAGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCGAGTCCCCCTCTGCATG
** * *
29777410 CTATTGGTACC-GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGTACGAACTCGCTAT
1 CTACCGGT-CCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGTATGAACTCCCTAT
* * * *
29777474 GCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCTGACCGGAGAGGCAGAATGCGCAAG
65 GCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
* * * * *
29777539 CCGAGGATCGGCCCAGTCCCCCCTACATGCTGTCGATCC--C-GCT-G--T--T--GCAACCCTC
130 CCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCTGCTCCGCAA-CCTC
* * * * * *
29777594 GTTCCGATCTGATCTTAGACTTGGAATGAACTCCATATGCTTAGAC-TAGGGATGAACTCTGTAT
194 GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTAT
* * * * *
29777658 GCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAACCAGAGAGGTAGGATGCGTAAG
258 GCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAG
29777723 CCG
323 CCG
29777726 AGGATCGAAC
Statistics
Matches: 706, Mismatches: 112, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
500 2 0.00
501 122 0.17
504 1 0.00
507 1 0.00
509 1 0.00
510 3 0.00
511 1 0.00
513 146 0.21
514 423 0.60
515 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (510 bp):
CTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGTATGAACTCCCTATG
CCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGC
CGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCTGCTCCGCAACCTCGA
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
TAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCG
GGGACCAGCCCGATCCCCCCTACGTACTATCGATCCTGCTCCAGCAACCCTCGAGCCGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTCCAGGCACTGAGC
CAGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCGAGTCCCCCTCTGCATG
Found at i:29777401 original size:868 final size:864
Alignment explanation
Indices: 29775734--29777401 Score: 1891
Period size: 868 Copynumber: 1.9 Consensus size: 864
29775724 TTAGACATGC
* * * * *
29775734 AATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGGCTAAGAAAACCCACGAAACGAGC
1 AATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCAAAGAAAACCCACCAAACGAGC
* * ***
29775799 GTGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGTGCAAACCGGGGATTGGCCCAATCCCCCCCT
66 GTGCGAGCGCTCAGCCGACCGGAGAGGCAAAATGTGCAAACCGGGGACCAGCCCAATCCCCCCCT
* * * ** *
29775864 ATGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGATTCGATCTTAGACTTGGAATGAACTCC
131 ACGTACTGTCGATCCTGCTACCACAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCC
* * * * * * * * *
29775929 GTATGCATAAGTCAATCCATGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCATAATGCG
196 GTATGCATAACTCAACCCACGAAACAAGCGTCCAGGCACTGAGCAGGCAGAAGAGGCATAATGCG
* * * * * *
29775994 CAAGCCGGGGATCGACCTGATCCCCCTCAACGTGCTATCGGTCTCGCTGCCACAACCCTTGGTCC
261 CAAGCCAGGGATCGACCCGATCCCCCTCAACATGCTACCAGTCTCGCTGCCACAACCCTCGGTCC
** * * *
29776059 GGTTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGG
326 GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGAG
* * * * *
29776124 CGCTCAGCCGGCCAGAGAGGCAGAATGTGCAAGCCAAGGATCGACCCAGTCCCCTCTGCGTGCTG
391 CGCTCAACCGACCAGAGAGGCAGAATGTGCAAGCCAAGGATAGACACAGTCCCCCCTGCGTGCTG
*
29776189 CCGATCCTACTGTCGCAACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAACTTCCTATGCTT
456 CCGATCCTACTGTCGCAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTTCCTATGCTT
* *
29776254 AGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGG
521 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGA
* * * * * *
29776319 CCGGAGAGGCATAATGTGCAAGTCGAGGATCAGCCTGATCCCCCTCTTCGTGTTATCGATCCCAC
586 CCGGAGAGGCAGAATGCGCAAGTCGAGGACCAGCCCGATCCCCCTCTACGTGCTATC-AT--CAC
* * *
29776384 TACCGGTCCTGCTACCACAACCCTCGATTCGGCTAGGGCTTAGACATGGTATGAACTCTGTATGC
648 TACC-GTCCTGCTA-CACAACCCTCGATTCGGCTAGAGCTTAGACATGGAATGAACTCCGTATGC
* * * * *
29776449 CTAAGCCATCCCATAAAATGAGCGTGCGGGTACTCAGCCAGCCAGAGAGGTAGAATGCGTAAGCC
711 CTAAGCCAACCCACAAAACGAGCGTGCGGGTACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCC
*
29776514 AGGGATCGACCCGGTCCCCCCTGTGTGCTACCGATCTTGCTACTGGTCTGGCTGCCGTAACCTTT
776 AGGGATCGACCCAGTCCCCCCTGTGTGCTACCGATCTTGCTACTGGTCTGGCTGCCGTAACCTTT
29776579 GATCTGGTCTGATCTTAGACTGGG
841 GATCTGGTCTGATCTTAGACTGGG
** *
29776603 AATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCAAAGCCAACCCACCTAACGAGC
1 AATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCAAAGAAAACCCACCAAACGAGC
* * * *
29776668 GTGCGAGCGCTCAGCCGATCGGAGAGGCAGAATAG-GCAAGCCGGGGACCAGCCCAGT-CCCCCC
66 GTGCGAGCGCTCAGCCGACCGGAGAGGCAAAAT-GTGCAAACCGGGGACCAGCCCAATCCCCCCC
*
29776731 TGCGTACTGTCGATCCTGCTACCACAACCCTCGAG-CCGA-TCTGATCTTAGACTGGGAATGAAC
130 TACGTACTGTCGATCCTGCTACCACAACCCTCG-GTCCGATTC-GATCTTAGACTGGGAATGAAC
* * *
29776794 TCTGTATGCCTAACTCAACCCACGAAACAAGCGTCCAGGCACTGAGCCAGTCAG-AGAGGCATAA
193 TCCGTATGCATAACTCAACCCACGAAACAAGCGTCCAGGCACTGAG-CAGGCAGAAGAGGCATAA
* ***
29776858 TGCGCAGGCCAGGGATCGACCCGATCCCCCTTTGCATGCTACCAGTC-CTGCTGCCACAACCCTC
257 TGCGCAAGCCAGGGATCGACCCGATCCCCCTCAACATGCTACCAGTCTC-GCTGCCACAACCCTC
*
29776922 GGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGT
321 GGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGT
** * * *** *
29776987 GTGAGTGCTCAACCGACCGGAGAGGCAGAATGTGCAAGCTGGGGATAGACACGGTCCCCCCTTGC
386 ACGAGCGCTCAACCGACCAGAGAGGCAGAATGTGCAAGCCAAGGATAGACACAGTCCCCCC-TGC
* * * * ** *
29777052 GTGCTGTCGATCCTGCTGCTGGTCTGACTACCGCAATCCTCGGTCCGGTCTGATCTTAGACTGGG
450 GTGCTGCCGA---T-C--CT--ACTG--T--CGCAACCCTCGATCCGGTCCAATCTTAGACTAGG
* * *
29777117 AATGAAC-TCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATC-
503 AATGAACTTCC-TATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCA-CAAAACG
* * * *
29777179 AGCGTGCGGGCGCTTAGTCGACCGGAGAGGTAGAATGCGCAAG-CTGTGGACCAGCCCGATCCCC
565 AGCGTACGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGTC-GAGGACCAGCCCGATCCCC
* * * * * * *
29777243 C-CTACGTGCTATC-T-A-T-CC-TGCTG-TA-GCAACCCTCGTTTTGG-TCCGATCTTAGA-TT
629 CTCTACGTGCTATCATCACTACCGTCCTGCTACACAACCCTCGATTCGGCT-AGAGCTTAGACAT
* * ** * * * *
29777298 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGCCGGTCGGA
693 -GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTACTCAGCCAGCCAGA
* * * *
29777363 GAGGCATAATGCGCAAGTCGGGGATCGACCTAGTCCCCC
757 GAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCC
29777402 TCTGCATGCT
Statistics
Matches: 659, Mismatches: 116, Indels: 49
0.80 0.14 0.06
Matches are distributed among these distances:
867 5 0.01
868 366 0.56
869 120 0.18
870 3 0.00
871 4 0.01
872 1 0.00
873 3 0.00
874 1 0.00
875 3 0.00
877 3 0.00
878 1 0.00
879 1 0.00
880 14 0.02
881 129 0.20
882 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (864 bp):
AATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCAAAGAAAACCCACCAAACGAGC
GTGCGAGCGCTCAGCCGACCGGAGAGGCAAAATGTGCAAACCGGGGACCAGCCCAATCCCCCCCT
ACGTACTGTCGATCCTGCTACCACAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCC
GTATGCATAACTCAACCCACGAAACAAGCGTCCAGGCACTGAGCAGGCAGAAGAGGCATAATGCG
CAAGCCAGGGATCGACCCGATCCCCCTCAACATGCTACCAGTCTCGCTGCCACAACCCTCGGTCC
GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGAG
CGCTCAACCGACCAGAGAGGCAGAATGTGCAAGCCAAGGATAGACACAGTCCCCCCTGCGTGCTG
CCGATCCTACTGTCGCAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTTCCTATGCTT
AGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGA
CCGGAGAGGCAGAATGCGCAAGTCGAGGACCAGCCCGATCCCCCTCTACGTGCTATCATCACTAC
CGTCCTGCTACACAACCCTCGATTCGGCTAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACAAAACGAGCGTGCGGGTACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGA
TCGACCCAGTCCCCCCTGTGTGCTACCGATCTTGCTACTGGTCTGGCTGCCGTAACCTTTGATCT
GGTCTGATCTTAGACTGGG
Found at i:29779319 original size:26 final size:25
Alignment explanation
Indices: 29779290--29779341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
29779280 TCCGGTCCAT
29779290 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACT-CGTATG
29779316 CTTAGACATGGAATGAACTCGTATG
1 CTTAGACATGGAATGAACTCGTATG
29779341 C
1 C
29779342 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 17 0.68
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCGTATG
Found at i:29786445 original size:26 final size:26
Alignment explanation
Indices: 29786407--29786458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29786397 GGCTCAAAAT
29786407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29786433 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29786459 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29786788 original size:25 final size:26
Alignment explanation
Indices: 29786748--29786799 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
29786738 TCTGATTGAT
29786748 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29786773 CTTAGACTGAGG-ATGAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCTGTATG
29786799 C
1 C
29786800 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29786978 original size:25 final size:26
Alignment explanation
Indices: 29786928--29786979 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
29786918 CCGATCCAAT
*
29786928 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29786954 CTTAGACTGGG-ATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29786979 C
1 C
29786980 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29787326 original size:26 final size:25
Alignment explanation
Indices: 29787288--29787339 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
29787278 TCGGTCTGAT
29787288 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACT-CGTATG
29787314 CTTAGAC-ATGGAATGAACTCGTATG
1 CTTAGACTA-GGAATGAACTCGTATG
29787339 C
1 C
29787340 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCGTATG
Found at i:29787813 original size:26 final size:25
Alignment explanation
Indices: 29787779--29787830 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
29787769 TCCGGTCGAT
29787779 CTTAACTGGGAATGAACTCCGTATG
1 CTTAACTGGGAATGAACTCCGTATG
* *
29787804 CTTAGACTGGGGATGAACTTCGTATG
1 CTTA-ACTGGGAATGAACTCCGTATG
29787830 C
1 C
29787831 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAACTGGGAATGAACTCCGTATG
Found at i:29788366 original size:25 final size:26
Alignment explanation
Indices: 29788332--29788386 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
29788322 CTGGTTCGAT
29788332 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29788357 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29788383 CTTA
1 CTTA
29788387 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29789363 original size:26 final size:26
Alignment explanation
Indices: 29789288--29789365 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
29789278 GGCTCAAAAT
* *
29789288 CTTAGAC-TGGGAAAGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29789314 CTTAGACATGCAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
29789340 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29789366 GCTAAGAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 45 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29789666 original size:156 final size:154
Alignment explanation
Indices: 29789339--29789778 Score: 410
Period size: 156 Copynumber: 2.8 Consensus size: 154
29789329 AACTCCGTAT
* * *
29789339 GCTTAGACATGGAATGAACTTCGTATGGCTAAGAAAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATTGAATGAACTCCGTAT-GCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
29789404 CGGCCG-AGAGGCAAAATGTGCAA-CCGGGGATTGGCCCAATCCCCCTATGTGCTGTCGATCCTG
65 CGGCCGAAGAGGCAAAATGTGCAAGCCGGGGA-TCGACCAATCCCCCTACGTGCTATCGATCCTG
** *
29789467 CTGCTGCAACCCTCGGTCCGATTCGA
129 CTGCCACAACCCTCGGTCAGATTCGA
* * * * *
29789493 TCTTAGAC-TTGGAATGAACTCCGTATGCATAAGTCAATCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATT-GAATGAACTCCGTATGC-TAAGACAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
29789557 GCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCGATCCCCCTCAACGTGCTATCGGT-
64 GC-GGCCGAAGAGGCAAAATGTGCAAGCCGGGGATCGACCAATCCCCCT--ACGTGCTATCGATC
*
29789621 CTCGCTGCCACAACCCTTGGTCTAG-TT-G-
126 CT-GCTGCCACAACCCTCGGTC-AGATTCGA
* * * * * *
29789649 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGGCGCTCAG
1 GCTTAGACATTGAATGAACTCCGTATG-CTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * **
29789714 CCGGCC-AGAGAGGCAGAATGTGCAAGCCAAGGATCGACCCAGTCCCCCTGCGTGCTGCCGATCC
65 -CGGCCGA-AGAGGCAAAATGTGCAAGCCGGGGATCGA-CCAATCCCCCTACGTGCTATCGATCC
29789778 T
127 T
29789779 ACTGTCGCAA
Statistics
Matches: 231, Mismatches: 40, Indels: 28
0.77 0.13 0.09
Matches are distributed among these distances:
153 3 0.01
154 53 0.23
155 15 0.06
156 108 0.47
157 23 0.10
158 28 0.12
159 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (154 bp):
GCTTAGACATTGAATGAACTCCGTATGCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAGC
GGCCGAAGAGGCAAAATGTGCAAGCCGGGGATCGACCAATCCCCCTACGTGCTATCGATCCTGCT
GCCACAACCCTCGGTCAGATTCGA
Found at i:29789856 original size:25 final size:26
Alignment explanation
Indices: 29789806--29789857 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
29789796 CTGGTCCAAT
29789806 CTTAGACTAGGAATGAACTTCCTATG
1 CTTAGACTAGGAATGAACTTCCTATG
*
29789832 CTTAGACT-GGGATGAAC-TCCATATG
1 CTTAGACTAGGAATGAACTTCC-TATG
29789857 C
1 C
29789858 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 3 0.12
25 13 0.54
26 8 0.33
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCCTATG
Found at i:29790202 original size:26 final size:26
Alignment explanation
Indices: 29790164--29790216 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29790154 CTGGTCTGAT
*
29790164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29790190 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
29790216 C
1 C
29790217 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29790705 original size:26 final size:26
Alignment explanation
Indices: 29790676--29790729 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
29790666 GTCTGATCTT
*
29790676 AGAC-TGGAATGAACTCCGTATGCTTA
1 AGACATGGAATGAACTCCG-ATGCCTA
29790702 AGACATGGAATGAACTCCGATGCCTA
1 AGACATGGAATGAACTCCGATGCCTA
29790728 AG
1 AG
29790730 CCAACCCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
AGACATGGAATGAACTCCGATGCCTA
Found at i:29790841 original size:509 final size:502
Alignment explanation
Indices: 29789961--29791291 Score: 1424
Period size: 509 Copynumber: 2.6 Consensus size: 502
29789951 ATCGATCCCA
* * * *
29789961 CTACCGGTCCTGCTACCACAACCCTCGATTCGGCTAGGGCTTAGACATGGTATGAACT-CGTATG
1 CTACCGGTCCTGCTGCCACAACCCTCG-TCCGGCTGGGGCTTAGACATGGTATGAACTCCCTATG
* ** * * * * *
29790025 CCTAAGCCATCCCACAAAATGAGCGTGCGGTACTCAGCCAGCCAGAGA-GCAGAATGCGTAAGCC
65 CCTAAGCCAACCCATGAAATGGGCGTGCGGTGCTCAGCC-GACGGAGAGGCAGAATGCGCAAG-C
* * ** * * * *
29790089 AGGGATCGACCCGTCCCCCCTGTGTGCTACCGATCTTGCTACTGGTCTGGCTGCCGTAA-CCTGA
128 AGGGATCGACCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCT-GTCT-GCTACCGCAATCCTG-
* *
29790153 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCC
190 TCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
* *** * * * *
29790218 AAAGCCAACCCACCTAACGAGCGTGCGAGCGCTCAGCCGATCGGAGAGGCAGAATAG-GCAAGCC
254 TAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAAT-GCGCAAGCC
* * *
29790282 GGGACCAGCCCAGTCCCCCCTGCGTACTGTCGATCCTGCTACCACAACCCTCGAGCCGATCTGAT
318 GGGACCAGCCCAGTCCCCCCTACGTACTATCGATCCTGCTACCACAACCCTCGAGCCGATCCGAT
*
29790347 CTTAGACTGGGAATGAACTCTGTATGCCTAACTCAA-CCACGAAACAAGCGTCCAGGCACTGAGC
383 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTCCAGGCACTGAGC
* *
29790411 CAGTCAGAGAGGCATAATGCGCAGGCCAGGGATCGACCCGA-TCCCCCTTTGCATG
448 CAGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGA-CCGAGTCCCCCTCTGCATG
* * *
29790466 CTACCAGTCCTGCTGCCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
1 CTACCGGTCCTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGTATGAACTCCCTATGC
* * *
29790531 CTAAGCCAACCCATGAAATGGGCGTGTGAGTGCTCAACCGACGGAAAGAGGCAGAATGTGCAAGC
66 CTAAGCCAACCCATGAAATGGGCGTGCG-GTGCTCAGCCGACGG--AGAGGCAGAATGCGCAAGC
* * *
29790596 TGGGATAGACACGGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCTGTCTGACTACCGCAATCCTC
128 AGGGATCGAC-CAGTCCCCCC-TGCGTGCTGTCGATCCTGCTGCTGTCTG-CTACCGCAATCCT-
29790661 GTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCTTAAGACATGGAATGAACTCCG-ATGC
189 GTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCTT-AGACATGGAATGAACTCCGTATGC
* *
29790725 CTAAGCCAACCCATGAAATC-AGCGTGCGGGCGCTTAGTCGACCGGAGAGGTAGAATGCGCAAGC
253 CTAAGCCAACCCATGAAA-CAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGC
* * * ** **** *
29790789 TGTGGACCAGCCC-GATCCCCCCTACGTGCTATCTATCCTGCT-GTAGCAACCCTCGTTTTGGTC
317 CG-GGACCAGCCCAG-TCCCCCCTACGTACTATCGATCCTGCTACCA-CAACCCTCGAGCCGATC
* * * * * ***
29790852 CGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTT
379 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTCCAGGCACT
* * * * *
29790917 GAGCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCTAGTCCCCCTCTGCATG
444 GAGCCAGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCGAGTCCCCCTCTGCATG
** * *
29790976 CTATTGGTACC-GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGTACGAACTCGCTAT
1 CTACCGGT-CCTGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGTATGAACTCCCTAT
* * * *
29791040 GCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCTGACCGGAGAGGCAGAATGCGCAAG
64 GCCTAAGCCAACCCATGAAATGGGCGTGC-GGTGCTCAGCCGA-CGGAGAGGCAGAATGCGCAAG
* * * * * *
29791105 CCGAGGATCGGCCCAGTCCCCCCTACATGCTGTCGATCC--C-GCTGT-TGCAACC-C--TCGT-
127 CAG-GGATC-GACCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGTCTGCTACCGCAATCCTG
* * * *
29791162 TCCGATCTGATCTTAGACTTGGAATGAACTCCATATGCTTAGAC-TAGGGATGAACTCTGTATGC
190 TCCGGTCTGATCTTAGAC-TGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGC
* * * * *
29791226 CTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAACCAGAGAGGTAGGATGCGTAAGCC
253 CTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCC
29791291 G
318 G
29791292 AGGATCGAAC
Statistics
Matches: 696, Mismatches: 102, Indels: 60
0.81 0.12 0.07
Matches are distributed among these distances:
499 1 0.00
500 33 0.05
501 80 0.11
502 3 0.00
504 27 0.04
505 61 0.09
506 10 0.01
507 19 0.03
508 111 0.16
509 142 0.20
510 120 0.17
511 83 0.12
512 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (502 bp):
CTACCGGTCCTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGTATGAACTCCCTATGC
CTAAGCCAACCCATGAAATGGGCGTGCGGTGCTCAGCCGACGGAGAGGCAGAATGCGCAAGCAGG
GATCGACCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGTCTGCTACCGCAATCCTGTCCGGT
CTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGACCAG
CCCAGTCCCCCCTACGTACTATCGATCCTGCTACCACAACCCTCGAGCCGATCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACAAGCGTCCAGGCACTGAGCCAGTCAGA
GAGGCATAATGCGCAAGCCAGGGATCGACCGAGTCCCCCTCTGCATG
Found at i:29792825 original size:26 final size:26
Alignment explanation
Indices: 29792796--29792848 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29792786 CTGATCCGAT
29792796 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
29792822 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
29792848 C
1 C
29792849 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:29793726 original size:25 final size:25
Alignment explanation
Indices: 29793671--29793720 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
29793661 CTCAGTCCGG
29793671 TCTG-ATCTTAGACTGGGAATGAAC
1 TCTGTATCTTAGACTGGGAATGAAC
*
29793695 TCTGTATCTTAGACTGGGGATGAAC
1 TCTGTATCTTAGACTGGGAATGAAC
29793720 T
1 T
29793721 TCGTATGCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (25 bp):
TCTGTATCTTAGACTGGGAATGAAC
Found at i:29794219 original size:159 final size:156
Alignment explanation
Indices: 29793833--29794336 Score: 557
Period size: 159 Copynumber: 3.2 Consensus size: 156
29793823 TGTCAATCCC
* * * * *
29793833 GCTGTCGATCCTGCTGTCACAACCCTCAGTCCGACTGGGGCTTAGACATCGAGTGAACTCTGTAT
1 GCTGTCGATCCTGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTAT
* * * * * *
29793898 GCCTAAGCTAACCAATGAAACGAGCGTGCGGGCGCTCAACCGGCTGGACAGGCAGAATGCACAAA
66 GCCTAAGC-AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAAAATGCGCAAG
29793963 TCGAGGAT-GGCCTGGTCCCCCCTGCGT
130 TCGAGGATCGGCCT-GTCCCCCCTGCGT
* * * * * ** * *
29793990 CCTGTCGATCTTGCTGCCACAACCCTCAGTCGGTC-CGATCTTAGACAGGGAATGAACTTCGTAT
1 GCTGTCGATCCTGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTAT
* ** * * * *
29794054 GCCTAAGTCAACCCATGAAACGAGCATGCGGGCATTGAGCTGG-TCGGAGATGCATAATGCGCAA
66 GCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCT-GGAGAGGCAAAATGCGCAA
* * *
29794118 GTCGGGGATCGACCTAGTCCCCTTCTGCGT
129 GTCGAGGATCGGCCT-GTCCCC-CCTGCGT
* * *
29794148 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGATCCTGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTAT
* *
29794213 GCCTAAGCCAACCCCTGAAACG-GACGTGTGGGCGCTCAGCCGGCTGGAGAGGCAAAATGCGCAA
66 GCCTAAG-CAACCCATGAAACGAG-CGTGCGGGCGCTCAGCCGGCTGGAGAGGCAAAATGCGCAA
*
29794277 GTCGAGGATCGGCCTGATCCCCCCAGCGT
129 GTCGAGGATCGGCCTG-TCCCCCCTGCGT
* *
29794306 GCTGTCGATCCTGTTGCCGCAACCCTCAGTC
1 GCTGTCGATCCTGCTGCCACAACCCTCAGTC
29794337 TAGTCCGATC
Statistics
Matches: 280, Mismatches: 59, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
155 1 0.00
156 77 0.28
157 41 0.15
158 69 0.25
159 91 0.32
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTGTCGATCCTGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAAAATGCGCAAGT
CGAGGATCGGCCTGTCCCCCCTGCGT
Found at i:29795737 original size:318 final size:316
Alignment explanation
Indices: 29795106--29795782 Score: 829
Period size: 318 Copynumber: 2.1 Consensus size: 316
29795096 TCCATACGCT
** * * * *
29795106 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGCAATGAGTGTGCGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAGCCG
* *
29795171 ACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCAGGTCCCCCTGCCTGCTGTCGACCCAGCT
66 ACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCAGGTCCCCCTGCCTGCTATCGACCCAGCT
* * * * * * *
29795236 GCTGCAACCTTCAGTTCGGTCGGATATTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA
131 GCCGCAACCCTCAGTCCAGTCGGATATTAAACTAGGAATGAACTCCATATGCATAAGTCAACCCA
* * * *
29795301 TGAAATGAGCGTGCAGGAACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGACGATCGACCCA
196 TGAAACGAGCGTACAGGAACTGAGCCGACCGAAGAGGCATAATGCGCAAGCAGACGATCGACCCA
* *
29795366 GTCCCCCTCTACGTGTTGCCGGTCCCACTGCCACAACCCTCGGTCCAGCTGGGGCA
261 GTCCCCCTCTACGTGCTGCCGGTACCACTGCCACAACCCTCGGTCCAGCTGGGGCA
*
29795422 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-TAGTACGGGCGCTCAGCC
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGT-GTACGGGCGCTCAGCC
* * * * *
29795486 GATCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGGTCCCCTCCTGCGTGCTATCGATCC
65 GACCGAAGAGGCAGAATGCACAAGCCGGGGATCAG-CCAGGT-CCC-CCTGCCTGCTATCGACCC
* * * ** *
29795550 TGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAAACTAGGAATGAACTCTGTATGCATAATTCAA
127 AGCTGCCGCAACCCTCAGTCCAGTCGGATATTAAACTAGGAATGAACTCCATATGCATAAGTCAA
* * ** * *
29795615 CCCATGAAACGAGTGTACGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGTCAG-GGATCG
192 CCCATGAAACGAGCGTACAGGAACTGAGCCGACCGAAGAGGCATAATGCGCAAG-CAGACGATCG
* *** * * * ** * *
29795679 GCTTGGTGCCCCTCTCCGTGCTGTCGGTACTGCTGCCACAACCCTCGGTCCGGCTGGGGCT
256 ACCCAGTCCCCCTCTACGTGCTGCCGGTACCACTGCCACAACCCTCGGTCCAGCTGGGGCA
*
29795740 TAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
29795783 TGGGCGTGCG
Statistics
Matches: 304, Mismatches: 52, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
315 2 0.01
316 90 0.30
317 3 0.01
318 207 0.68
319 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAGCCG
ACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCAGGTCCCCCTGCCTGCTATCGACCCAGCT
GCCGCAACCCTCAGTCCAGTCGGATATTAAACTAGGAATGAACTCCATATGCATAAGTCAACCCA
TGAAACGAGCGTACAGGAACTGAGCCGACCGAAGAGGCATAATGCGCAAGCAGACGATCGACCCA
GTCCCCCTCTACGTGCTGCCGGTACCACTGCCACAACCCTCGGTCCAGCTGGGGCA
Found at i:29795814 original size:159 final size:157
Alignment explanation
Indices: 29795103--29795879 Score: 628
Period size: 159 Copynumber: 4.9 Consensus size: 157
29795093 AACTCCATAC
* ** * * *
29795103 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGCAATGAGTGTGCGGGTGCTCAG
1 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
29795168 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCAGGTCCCC-CTGCCTGCTGTCGACCC
66 CCGACC-GAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCC
* ** * *
29795232 AGCTGCTGCAACCTTCAGTTCGG-TCGGA
130 TGCTGCCACAACCCTCAGTCCGGCT-GGA
** * * * * ** *
29795260 TATTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGAACTGAG
1 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
29795325 CCGACCGGAGAGGCATAATGCGCAAGCC-GACGATCGACCCAGTCCCCCTCTACGTGTTGCCGGT
66 CCGACC-GAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGT-CCCCTCTACGTGCTGTCGAT
** * * *
29795389 CCCACTGCCACAACCCTCGGTCCAGCTGGG
128 CCTGCTGCCACAACCCTCAGTCCGGCTGGA
* * * * ** *
29795419 GCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGATAGTACGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
29795484 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTGCGTGCTATCGATC
66 CCGACCG-AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCT-CTACGTGCTGTCGATC
* *
29795549 CTGCTGCCGCAACCCTCAGTCCAGTCT-GA
129 CTGCTGCCACAACCCTCAGTCC-GGCTGGA
* * * ** * ** * * * *
29795578 TCTTAAACTAGGAATGAACTCTGTATGCATAATTCAACCCATGAAACGAGTGTACGGGCGCTGAG
1 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * ** * * *
29795643 CCGATCGAAGAGGCATAATGCGCAAGTCAGGGATCGGCTTGGTGCCCCTCTCCGTGCTGTCGGTA
66 CCGACCG-AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCTCTACGTGCTGTCGATC
* *
29795708 CTGCTGCCACAACCCTCGGTCCGGCTGGG
129 CTGCTGCCACAACCCTCAGTCCGGCTGGA
* **
29795737 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGTTGCTCAG
1 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
29795802 TCGGCCAGAGAGGCAAAATGTGCAAGTCAGGGATCGGCCCGATCCCC-CTTACGTGCTGTCGATA
66 CCGACC-GAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTC-TACGTGCTGTCGATC
* *
29795866 CTGCTACCATAACC
129 CTGCTGCCACAACC
29795880 TTTCGTCCGA
Statistics
Matches: 486, Mismatches: 122, Indels: 23
0.77 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 87 0.18
158 42 0.09
159 346 0.71
160 10 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGACCGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCCT
GCTGCCACAACCCTCAGTCCGGCTGGA
Found at i:29795932 original size:26 final size:26
Alignment explanation
Indices: 29795896--29795948 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29795886 CCGATCCGAT
*
29795896 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
29795922 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29795948 C
1 C
29795949 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29796612 original size:26 final size:26
Alignment explanation
Indices: 29796577--29796627 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29796567 CGATTTGATC
* *
29796577 TTAGATTGGGAATGAACTTCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
29796603 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
29796628 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:29797334 original size:26 final size:26
Alignment explanation
Indices: 29797297--29797346 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29797287 GGCTCAAATA
29797297 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
29797323 TTAGACAT-GGAATGAACTCCGTAT
1 TTAGAC-TGGGAATGAACTCCGTAT
29797347 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:29797833 original size:26 final size:26
Alignment explanation
Indices: 29797797--29797849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29797787 CCGGTCCGAT
29797797 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
29797823 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
29797849 C
1 C
29797850 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:29798444 original size:11 final size:11
Alignment explanation
Indices: 29798428--29798452 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
29798418 TGGTTGGGCT
29798428 CTCCGGTGATG
1 CTCCGGTGATG
29798439 CTCCGGTGATG
1 CTCCGGTGATG
29798450 CTC
1 CTC
29798453 TGGCGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:29798946 original size:159 final size:160
Alignment explanation
Indices: 29798556--29799215 Score: 685
Period size: 159 Copynumber: 4.2 Consensus size: 160
29798546 ACTCTGTATG
* * *
29798556 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAAT-GAGCCTGCGGGCGCTCAG
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCGTGCGGGCGCTCAG
* * * * * *
29798620 TCGGCCGGAGAGGCAGAATGCGCAAGACAGGGATCGACCCGG-CCCCCCTGTGTGCTATCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * **
29798684 TACTACCGCAACCCTCGGT-TTGATCCGAT
131 TACTACCGCAACCCTCGGTCTGGCTGGGAT
* * * * * * *
29798713 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACA-AGCGTACGGGCGTTGAG
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCGTGCGGGCGCTCAG
* * * *
29798777 TCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCTCTGCGTGCTGTCGGT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCC-CTGCGTGCTGTCGAT
* * *
29798841 TCTGCTA-CGACAACCCTCGGTCTGGCTGGGGT
129 CCTACTACCG-CAACCCTCGGTCTGGCTGGGAT
* * * * *
29798873 -TTAGACAAGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATAG-GCGTGCGGGTGCTGAA
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCGTGCGGGCGCTCAG
* * * *
29798936 CCGGCTGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTTTGCGTGCTGTCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
* *
29799001 CCACTACCACAACCCTCGGTCTGGCTGGGA-
130 CTACTACCGCAACCCTCGGTCTGGCTGGGAT
* * * *
29799031 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CGAGCGTGCGGGCGCTCAG
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCGTGCGGGCGCTCAG
* * * * ** * * * *
29799095 CCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGACCGGTCCGATCCCTCCTGCGTGCTGCCGATCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* ** **
29799160 TGCTACCGCAACCCTCGGTCCAG-TTTGAT
131 TACTACCGCAACCCTCGGTCTGGCTGGGAT
*
29799189 CTTAGACAAGGAATGAACTCCATATGC
1 CTTAGACAAGGAATGAACTCCGTATGC
29799216 TTAGACTGGG
Statistics
Matches: 418, Mismatches: 73, Indels: 23
0.81 0.14 0.04
Matches are distributed among these distances:
156 1 0.00
157 91 0.22
158 65 0.16
159 254 0.61
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (160 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TACTACCGCAACCCTCGGTCTGGCTGGGAT
Found at i:29799517 original size:343 final size:342
Alignment explanation
Indices: 29798978--29799607 Score: 886
Period size: 343 Copynumber: 1.8 Consensus size: 342
29798968 ATCGACCCGG
* *
29798978 TCCCCCTTTGCGTGCTGTCGATCCCACTACCACAACCCTCGGTCTGGCTGGGACTTAGACATGGA
1 TCCCCCTCTGCGTGCTGTCGATCCCACTACCACAACCCTCGGTCCGGCTGGGACTTAGACATGGA
* *
29799043 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
66 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCGAAGAGG
** * ** * * *
29799108 CAGAATGCGTAAGCTGGGGACCGGTCCGATCCCTCCTGCGTGCTGCCGATCTTGCTACCGCAACC
131 CAGAATGCACAAGCTAGGGACCGACCCGATCCCCCCTGCGTGCTACCGATCTTGCTACCACAACC
* *
29799173 CTCGGTCCAGTTTGATCTTAGACAAGGAATGAACTCCATATGCTTAGACTGGGGACGAACTCCGT
196 CTCGGTCCAGTTCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACT-GGCACGAACTCCGT
* * *
29799238 ATGTCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCGAAAAGGTAGAATGCGCA
260 ATGCCTAAATCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAAAAGGTAGAATGCGCA
29799303 AGCCGTGGATTGGCCTGA
325 AGCCGTGGATTGGCCTGA
* * * * *
29799321 TCCCCCTCTGCGTGCTG-CTGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGG
1 TCCCCCTCTGCGTGCTGTC-GATCCCACTACCACAACCCTCGGTCCGGCTGGGACTTAGACATGG
* * *
29799385 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAGCCGGTCGAAGAG
65 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCGAAGAG
* * * *
29799450 GTAGAATGCACAAGCTAGGGATCGACCC-AGTCCCCCCTGTGTGCTACCGATCTTGCTGCCACAA
130 GCAGAATGCACAAGCTAGGGACCGACCCGA-TCCCCCCTGCGTGCTACCGATCTTGCTACCACAA
** * * * *
29799514 CCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGCATGAACTCTG
194 CCCTCGGTCCAGTTCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACTGGCACGAACTCCG
* *
29799579 TATGCCTAAATCAATCCACGAACCGAGCG
259 TATGCCTAAATCAACCCACGAAACGAGCG
29799608 CGTGGGCACT
Statistics
Matches: 248, Mismatches: 37, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
342 36 0.15
343 212 0.85
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (342 bp):
TCCCCCTCTGCGTGCTGTCGATCCCACTACCACAACCCTCGGTCCGGCTGGGACTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCGAAGAGG
CAGAATGCACAAGCTAGGGACCGACCCGATCCCCCCTGCGTGCTACCGATCTTGCTACCACAACC
CTCGGTCCAGTTCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACTGGCACGAACTCCGTA
TGCCTAAATCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAAAAGGTAGAATGCGCAA
GCCGTGGATTGGCCTGA
Found at i:29799576 original size:25 final size:26
Alignment explanation
Indices: 29799532--29799583 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
29799522 CTGGTTCGAT
29799532 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
29799558 CTTAGACT-GGCATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29799583 C
1 C
29799584 CTAAATCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29801027 original size:159 final size:158
Alignment explanation
Indices: 29800634--29801096 Score: 353
Period size: 157 Copynumber: 2.9 Consensus size: 158
29800624 AACTTCATAT
* * * * *
29800634 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAA
* * * * ** * * * ** * * *
29800699 TCGACCGGAGAGCCAGAATGCGTAAGCAGGGGACCG-TTTCGGTCCCCCCTGTGTGCTA-TCGAT
66 CCGACCGAAGAGGCAAAATGCACAAGCCGAGGATCGACCT-GATCCCCCATGCGTG-TACTCGAT
* ** ** * * * *
29800762 CCTGTTGTCGTAACCCTCGATCTGGTCT-GA
129 CCTGCTACCACAACCCTCGGT-TTGACTAGG
* * * * * * *
29800792 TCTTAG--ATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGATGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCA
* * * * ** * *
29800855 GCCGATCGGAGAGGCATAATGCGTAAGTCGAGGATCGACCTGATCCCCCTCTGCGTGCTACT-GA
65 ACCGACCGAAGAGGCAAAATGCACAAGCCGAGGATCGACCTGATCCCCC-ATGCGTG-TACTCGA
29800919 TCCTGCTACCACAACCCTCGGTTTGACTAGG
128 TCCTGCTACCACAACCCTCGGTTTGACTAGG
* * *
29800950 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAA
* * * **
29801015 CCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCTGATTCCCCATGCGTGTTGTCGATCC
66 CCGACCGAAGAGGCAAAATGCACAAGCCGAGGATCGACCTGATCCCCCATGCGTGTACTCGATCC
* *
29801080 TGCTATCGCAACCCTCG
131 TGCTACCACAACCCTCG
29801097 ATCCGATCTG
Statistics
Matches: 242, Mismatches: 55, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 88 0.36
158 65 0.27
159 85 0.35
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAA
CCGACCGAAGAGGCAAAATGCACAAGCCGAGGATCGACCTGATCCCCCATGCGTGTACTCGATCC
TGCTACCACAACCCTCGGTTTGACTAGG
Found at i:29802891 original size:26 final size:26
Alignment explanation
Indices: 29802850--29802900 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29802840 CCGGTTCAAT
*
29802850 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29802876 CTTAGACTGAGG-ATGACCTCCGTAT
1 CTTAGACTG-GGAATGAACTCCGTAT
29802901 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29803254 original size:25 final size:26
Alignment explanation
Indices: 29803217--29803268 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
29803207 CCTGTCTGAT
29803217 CTTAGACTGGGAATGAACT-TGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29803242 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
29803268 C
1 C
29803269 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29803634 original size:159 final size:158
Alignment explanation
Indices: 29803241--29803658 Score: 400
Period size: 159 Copynumber: 2.6 Consensus size: 158
29803231 GAACTTGTAT
* *
29803241 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTG-TGGAGCTCAG
* * * * *
29803306 TCGACCTGAGAGGCAAAATGCGCAAGCTGGGGA-CCGATCCAGTCCCCCTTACGTACTGTCGATC
65 CCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGATCCAGTCCCCCTTACGTACTGCCGATC
* * * * *
29803370 CTGCTGCTACAACCTTCGGTCCGGTCTGA
130 CCGCTGCAAAAACCTTCGATCCGATCTGA
* * * *
29803399 TCTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGT-TCAGGCA-CTG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGT--GG-AGCTC
** * * * * * * * *
29803462 AGCCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCGGTTCGA-TCCCCCTCTGCGTGCTGCC-
63 AGCCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGATCCAGTCCCCCT-TACGTACTGCCG
* *
29803525 AGTCCCGCTGCCAAAAATCTT-GATCCGAT-TGGG
127 A-TCCCGCTG-CAAAAACCTTCGATCCGATCT-GA
** *
29803558 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGATGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGA-GCTCAG
* * *
29803623 CCGACCAGAGAGGTAGAATGCCCAAGCCGGGGATCG
65 CCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCG
29803659 ACCTGGTCAC
Statistics
Matches: 207, Mismatches: 42, Indels: 21
0.77 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 92 0.44
159 106 0.51
160 8 0.04
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGAGCTCAGC
CGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGATCCAGTCCCCCTTACGTACTGCCGATCC
CGCTGCAAAAACCTTCGATCCGATCTGA
Found at i:29803746 original size:26 final size:26
Alignment explanation
Indices: 29803717--29803769 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29803707 CCAGTCTGAT
29803717 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
29803743 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
29803769 C
1 C
29803770 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:29803924 original size:867 final size:864
Alignment explanation
Indices: 29802249--29804908 Score: 2991
Period size: 867 Copynumber: 3.1 Consensus size: 864
29802239 GAGGCCAACC
* * * * * *
29802249 GGAGAGGCAGAATGCGCAAGCCGGGGATCGG-TCCGGTCCCTCTTACATGCTACCGATCCTACTA
1 GGAGAGGCAGAATGCACAAGCCGGGGATCGGCT-CGGTCCCCCCTACGTGCTATCGAT-CTACTG
* * * **
29802313 CTAGTCCTACTACTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTT
64 CTAGTCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTT
* * * * *
29802378 AGACATGGAATGGACTACT-TATGCCTAAGCCAACACATGAAACGAGCGTGC-GGCGCTCAATTG
129 AGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCAAGAAA-GAGCGTGCGGGCGCTCAGTCG
** * * * * * *
29802441 GTCGGAGAGGCAGAATACAAAAGCCGGGGACCGACTCGA-TCCCCCCTGCATGCTGTTGATCCTG
192 ACCTGAGAGGCAGAATGCACAAGCTGGGGACCGACTCCAGTCCCCCCTGCATGCTGTCGATCCTG
* * ** * * *
29802505 CTGCCGTAACCCTCATTCCGATCTGATCTTAGATTGGGAATGAACT-TCGTCTGCCTAAGTCAAC
257 CTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAAC
* * *
29802569 CCACGAAATGAGCGTTCAGGACGCTGAGTCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGG
321 CCACGAAATGAGCGTTCAGG-CACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGG
* * * * *
29802634 CCTGATCCCCCTCTGCTTGCTGTCGGTCCCGCTACCACAACTCTCAATCCGGCTGGGACTTAGAC
385 TC-GATCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACTCTCGATCCGGCTGGGGCTTAGAC
* *
29802699 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCAGCTGGCCG
449 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCAGCCGGCCG
* * * *
29802763 GAGAGGTAGAATGCCCAAGTCGAGGAGT-GACCTGGTCACCCCTGCGTGCTGTCGATCCTACTGT
513 GAGAGGTAGAATGCCCAAGCCGGGGA-TCGACCTGGTCACCCCTGTGTGCTGTCGATCCTGCTGT
*
29802827 CGCAACCCTCGGTCCGGT-TCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GAGGAT
577 CGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAG-GGAT
* * * * * * *
29802890 GACCTCCGTATACCTAAGTCAACCCATGAAAAGTGCATGCGGGCGCTCAGCCGACCGGAGAGGCA
640 GAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTCAGTCGGCCGGAGAGGCA
* * * * * * *
29802955 TAATGCGTAATCCGGGGATCAGCCCGATCCCCCTCTTCTTGCTATCGATCCTGCTACCGGTCTTG
705 TAATGCGTAAGCCGGGGATCAG-CCGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGGTCCTG
* * * *
29803020 CTACCATAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCATATTCCTAAGCCAACC
769 CTGCCATAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
29803085 CACGAAATGAGTGTGCAGGCGCTCAACCTGCT
834 CACGAAACGAGCGTGCGGGCGCTCAGCC-GCT
* *
29803117 GGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGGTCCCCCCTATTGTGCTATCGATACTACTG
1 GGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTA-CGTGCTATCGAT-CTACTG
* * * *
29803182 CTGGTTCTGCTGC-CCAACCCTCGATCCTGTCTGATCTTAGACTGGGAATGAACT-TGTATGCTT
64 CTAGTCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTT
*
29803245 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGA
129 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAA-GAGCGTGCGGGCGCTCAGTCGA
* * * * * *
29803310 CCTGAGAGGCAAAATGCGCAAGCTGGGGACCGA-TCCAGTCCCCCTTACGTACTGTCGATCCTGC
193 CCTGAGAGGCAGAATGCACAAGCTGGGGACCGACTCCAGTCCCCCCTGCATGCTGTCGATCCTGC
* * *
29803374 TGCTACAACCTTCGGTCCGGTCTGATCTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCC
258 TGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
*
29803439 ACGAAATGAGCGTTCAGGCACTGAGCCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCGGTTC
323 ACGAAATGAGCGTTCAGGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGG-TC
* * * * * * **
29803504 GATCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCAAAAATCTTGATCCGATTGGGGCTTAGACATG
387 GATCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACTCTCGATCCGGCTGGGGCTTAGACATG
* * * *
29803569 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGATGCTCAGCCGACCAGAGA
452 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGA
**
29803634 GGTAGAATGCCCAAGCCGGGGATCGACCTGGTCACCCCTGTGTGCTACCGATCCTGCTGTCGCAA
517 GGTAGAATGCCCAAGCCGGGGATCGACCTGGTCACCCCTGTGTGCTGTCGATCCTGCTGTCGCAA
* * *
29803699 CCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTTC
582 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCC
* * * * *
29803764 GTATGCCTAAGTCAAGCCACGAAACGAGCGTGTGGGTGCTCAGTCGGCCGGAGAGGCATAATACG
647 GTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTCAGTCGGCCGGAGAGGCATAATGCG
* ** * *
29803829 CAAGCCAAGGATCAGCACGGTCCCCCTCTACGTGCTGTCGATCTTGCTGCCGGTCCTACTGCCAT
712 TAAGCCGGGGATCAGC-CGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGGTCCTGCTGCCAT
* * *
29803894 AAACCTCGATC-CAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
776 AACCCTCGATCTGA-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * *
29803958 ACAAGCGTGCGGGCACCCAGCCGAT
840 ACGAGCGTGCGGGCGCTCAGCCGCT
* * *** * * ** *
29803983 CAGAGAGGTAGAATGTGTAAGCCAGGGATCGGC-CTGATCCCCCCT--GATGCTGCCGATCTTGC
1 -GGAGAGGCAGAATGCACAAGCCGGGGATCGGCTC-GGTCCCCCCTACG-TGCTATCGATC-TAC
* * **
29804045 TGCTAGTCCTGCAGCTGCAACCCTCGTTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
62 TGCTAGTCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
* * * *
29804110 TTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATAGAACA-AGCATACGTGCGCTCAG-
127 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA-AGAA-AGAGCGTGCGGGCGCTCAGT
* * ** *
29804173 C-AGGCTAGAGAGGTAGAATGCACAAGCTGGGGA-TTAGC-CCGGTCCCCCCTGCATGCTGTCGA
190 CGA-CCT-GAGAGGCAGAATGCACAAGCTGGGGACCGA-CTCCAGTCCCCCCTGCATGCTGTCGA
* **
29804235 TCTTGCTG-TCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
252 TCCTGCTGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
*
29804299 TCAACCCACGAAATGAGCGTAT-GGGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGG
316 TCAACCCACGAAATGAGCGT-TCAGGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGG
* * * *
29804363 A----TCGA-----C-CTGACATGCTATCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCT
380 ATCGGTCGATCCCCCTCTG-CATGCTGTCGGTCCCGCTGCCACAACTCTCGATCCGGCTGGGGCT
* * *
29804418 TAGACATGGAATGAACT-CCTAATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCC
444 TAGACATGGAATGAACTCCCT-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * ** *
29804482 GGTCGGAGAGGCAGAATGCGTAAGCCGGGGATC-AGCCCGGTC-CCCC-GTGTGCTGTCGATCCT
508 GGCCGGAGAGGTAGAATGCCCAAGCCGGGGATCGA-CCTGGTCACCCCTGTGTGCTGTCGATCCT
* * * * **
29804544 GCTGTCGCAACCCTCGATTCGGTCCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTAGG
572 GCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGG
* *
29804609 GATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTTAGTCAGTCGGAGAG
637 GATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGC----TCAGTC------
* * ** * * *
29804674 GAGCCGAAGAGGCATAATGCATAAGTTGGGGATCAACCTTGGTCCCCTTTTACGTGCTGTCGATC
692 G-GCCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCC--GGTCCCCCTCTACGTGCTGTCGATC
* * *
29804739 CCGCTGCCAGTCCTGCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCGT
754 CTGCTGCCGGTCCTGCTGCCATAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCGT
* * * *
29804804 ATGCCTATGCCAACCCACAAAACGAGCGTGTGGGCGCTCAGCCGACG
819 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CT
* * *
29804851 GGACAGGTAGAATGCACAAGTCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATC
1 GGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATC
29804909 CTGTTGTTGG
Statistics
Matches: 1505, Mismatches: 239, Indels: 96
0.82 0.13 0.05
Matches are distributed among these distances:
855 114 0.08
856 11 0.01
857 122 0.08
859 6 0.00
862 4 0.00
864 2 0.00
865 25 0.02
866 77 0.05
867 895 0.59
868 222 0.15
869 27 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (864 bp):
GGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATCTACTGCT
AGTCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
ACATGGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAAGAGCGTGCGGGCGCTCAGTCGACCT
GAGAGGCAGAATGCACAAGCTGGGGACCGACTCCAGTCCCCCCTGCATGCTGTCGATCCTGCTGC
TGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
AAATGAGCGTTCAGGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGTCGATC
CCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACTCTCGATCCGGCTGGGGCTTAGACATGGAAT
GAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTA
GAATGCCCAAGCCGGGGATCGACCTGGTCACCCCTGTGTGCTGTCGATCCTGCTGTCGCAACCCT
CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTAT
GCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTCAGTCGGCCGGAGAGGCATAATGCGTAAG
CCGGGGATCAGCCGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGGTCCTGCTGCCATAACCC
TCGATCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGCT
Found at i:29805685 original size:26 final size:26
Alignment explanation
Indices: 29805647--29805699 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29805637 GGCTCAAACT
29805647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29805673 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29805699 C
1 C
29805700 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29806031 original size:26 final size:26
Alignment explanation
Indices: 29805990--29806042 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29805980 CCAATCCAAT
* *
29805990 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
29806016 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
29806042 C
1 C
29806043 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:29806542 original size:158 final size:158
Alignment explanation
Indices: 29806170--29806542 Score: 358
Period size: 159 Copynumber: 2.3 Consensus size: 158
29806160 CTACTGGTCC
* * * * *
29806170 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTACCACAACCCTCGGTC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAA
* * * * * * *
29806235 CCCACAAAATGAGCGTTCAGACGCTGAGCAGGTCGAAGAGTCATAATGCGCAAGCCGGGAATCGG
65 CCAACAAAACGAGCGTGCAGACGCTCAGCAGGTCGAAGAGGCAGAATGCGCAAGCCGGGAATCGA
*
29806300 CCCAATCCCCCTCTGCATGCTGCCGGTCT
130 CCCAATCCCCCTCTGCATGCTGCCGATCT
* * * ** *
29806329 TGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCGAAGCCA
1 TGCTACCACAACCCTCGGTCAGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCGAAGCCA
* * * ** * * *
29806393 ACCAACGAAACGTGCGTGCGGGTGCTCAGCCGGTCGAA-ACGGCAGAATGCGTAAGTCGAGG-AT
64 ACCAACAAAACGAGCGTGCAGACGCTCAGCAGGTCGAAGA-GGCAGAATGCGCAAGCCG-GGAAT
** * *
29806456 CGACCCGGTCCCCC-CTGCGTGCTGTCGATCT
127 CGACCCAATCCCCCTCTGCATGCTGCCGATCT
* * *
29806487 TGCTACCGCAACCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 TGCTACCACAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
29806543 TTAGACTGGG
Statistics
Matches: 171, Mismatches: 37, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 58 0.34
159 109 0.64
160 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
TGCTACCACAACCCTCGGTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAAC
CAACAAAACGAGCGTGCAGACGCTCAGCAGGTCGAAGAGGCAGAATGCGCAAGCCGGGAATCGAC
CCAATCCCCCTCTGCATGCTGCCGATCT
Found at i:29806567 original size:26 final size:27
Alignment explanation
Indices: 29806516--29806573 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
29806506 CCAGTCTGAT
* **
29806516 CTTAGACTGGGAATGAACTCTGTATG-
1 CTTAGACTGGGAATAAACTCCATATGC
*
29806542 CTTAGACTGGGGATAAACTCCATATGC
1 CTTAGACTGGGAATAAACTCCATATGC
29806569 CTTAG
1 CTTAG
29806574 TCAACCCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATAAACTCCATATGC
Found at i:29807437 original size:159 final size:158
Alignment explanation
Indices: 29807008--29807537 Score: 378
Period size: 159 Copynumber: 3.3 Consensus size: 158
29806998 GCCGGTCCTG
* ** *
29807008 CTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* ** * * *
29807073 CACGAAACGATG-GTGCAGGTGCTCAGCCGGTCGGAGTGGCAGAATACGTAAGCT-AGGGATCAA
66 CACGAAACGA-GCGTGCGGGCACTCAGCCGGTCAGAGAGG-AGAATGCGTAAGCTGA-GGATCAA
* * ** **
29807136 CCTGGTCCCCTCCTGCGTGCTGTTGATCCTG
128 CCCGATCCCCTCCTGCGTGCTGCAGATCCCA
* ** * * * ** * * ** *
29807167 CTACTGCAACGCTCAGTCTAGTCT-GATCTTAGA-TTGAGAATGAGCTCTGTATGCCTAAGTCAA
1 CTGCCACAACCCTCGGTCTGGT-TGGGGCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAA
* * * * * * * *
29807230 CCCACGAAATGAGCATACGGGCACTGAGCTGGCCAGAAAGGCGTAATGCGTAAGCTGAGGATCAA
64 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGAG-AATGCGTAAGCTGAGGATCAA
29807295 CCCGAT-CCCTCTCTGCGTGCTGCCAG-TCCCA
128 CCCGATCCCCTC-CTGCGTGCTG-CAGATCCCA
* * *
29807326 CTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTGAGCCAACA
1 CTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * * *
29807391 CACGAAACGAGCGTGCGGGCACTCAGCCAGTCAGAGAGGAAGAATGCGCAAGCTGGGGATCGACC
66 CACGAAACGAGCGTGCGGGCACTCAGCCGGTCAGAGAGG-AGAATGCGTAAGCTGAGGATCAACC
* * * * **
29807456 TGGTCCCC-CTTACGTGCTGTC-GATCCTG
130 CGATCCCCTCCTGCGTGCTG-CAGATCCCA
* * * * **
29807484 CT-ACAGTAACCCTCGATCTGGTTTGATCTTAGAC-TGGGAATGAACTCCATATGC
1 CTGCCA-CAACCCTCGGTCTGGTTGGGGCTTAGACAT-GGAATGAACTCCATATGC
29807538 TTAGATTGGG
Statistics
Matches: 279, Mismatches: 78, Indels: 29
0.72 0.20 0.08
Matches are distributed among these distances:
157 4 0.01
158 64 0.23
159 202 0.72
160 9 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (158 bp):
CTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGAGAATGCGTAAGCTGAGGATCAACCC
GATCCCCTCCTGCGTGCTGCAGATCCCA
Found at i:29807838 original size:354 final size:349
Alignment explanation
Indices: 29807326--29808405 Score: 967
Period size: 354 Copynumber: 3.1 Consensus size: 349
29807316 GCCAGTCCCA
* * * *
29807326 CTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTGAGCCAA-C
1 CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * *
29807390 ACACGAAACGAGCGTGCGGGCACTCAGCCAGTCAGAGAGGAAGAATGCGCAAGCTGGGGATCGAC
66 A-ACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGAAGAATGCGCAAGC-GGGGATCGAC
* * *
29807455 CTGGTCCCC-CTTACGTGCTGTCGATCCTGCTACAGTAACCCTCGATCTGGTTTGATCTTAGACT
129 CCGGTCCCCTC-TACGTGCTGTCAATCCTGCTAC-GTAACCCTCGATCTGGTTCGATCTTAGACT
*
29807519 GGGAATGAACTCCATATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACG
192 GGGAATGAACTCCATATGCTTAGAAT-GGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
29807584 AACGTGCGGGCGCTTAGTCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGGTCCCCC
256 AAAGTGCGGGCGCTTAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC
29807649 TCTGCATGCTGTCGATCAGTTGTTGGTCCTG
321 TCTGCATGCTGTCGATCAG-TG-TGGTCCTG
* * *
29807680 CTGCCACAACCCTCAGTCCGGCTGGCGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
** * * *
29807745 AATAAAACGAGTGTGCGGGCGCTCAGTCGGCC-GAAGAGGTAGAATGCACAAGTCGGGGATCGAC
66 AACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAG-AGAGGAAGAATGCGCAAG-CGGGGATCGAC
* * * * * * * *
29807809 CCGGTCCCCTCTGCGTGCGGCCAATCCTGCTGCTGTCCTGCTACCACAACCCTCGGTCCGATCCG
129 CCGGTCCCCTCTACGTGCTGTCAAT-C--CTGC--TAC-G-T-----AACCCTCGATCTGGTTCG
* * *
29807874 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAA
182 ATCTTAGACTGGGAATGAACTCCATATGCTTAGA-ATGGGATGAACTTC-GTATGCCTAAGTCAA
* ** * * * * * *
29807938 CCCACAAAACGAGTGTGTGGGTG-TTCAGCCGACCGGAGAGGCAGAATGCGGAAGCCGGGGATTG
245 CCCACGAAACGAAAGTGCGGGCGCTT-AGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
* * *
29808002 GCCCGGTCGCCCTCTACGTGCTGTC-A--A------TCCTG
309 GCCCGGTCCCCCTCTGCATGCTGTCGATCAGTGTGGTCCTG
* ** * * * * *
29808034 CTGTCGTAACCCTCGGTTCAGCTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCGAACC
1 CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * ** *
29808099 CACGAAAC-AGGTGTACGGGCGCTCAGCCGGCCAGAGAGGCCGAATGCGCAAGCCGGGGATCGGC
66 AACGAAACGA-GTGTGCGGGCGCTCAGCCGGCCAGAGAGGAAGAATGCGCAAG-CGGGGATCGAC
* * * * * * * *
29808163 TCGAT-CCCTCCAACGTGCTTTCAATCCTGCTGTCGCAA-CCTCGAT-TCAGTTCAATCTTAGAC
129 CCGGTCCCCT-CTACGTGCTGTCAATCCTGCT-ACGTAACCCTCGATCT-GGTTCGATCTTAGAC
* * * *
29808225 TGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
191 TGGGAATGAACTCCATATGCTTAGAAT-GGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
* * * ** * *
29808290 GAAAATGCAGGCGCTCAGTCGACCGGAGAGGCAGAATGCATAAGCCAAGGATCGGCTCGGTCCCC
255 GAAAGTGCGGGCGCTTAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCC
*
29808355 C-CTGCATGCTG-CAGATCCTGCTGTGGTCCTG
320 CTCTGCATGCTGTC-GAT-CAG-TGTGGTCCTG
* * *
29808386 CTACCGCAACCATCAGTCCG
1 CTGCCACAACCCTCAGTCCG
29808406 ATCTAATCTT
Statistics
Matches: 571, Mismatches: 117, Indels: 78
0.75 0.15 0.10
Matches are distributed among these distances:
340 1 0.00
341 9 0.02
342 120 0.21
343 4 0.01
349 2 0.00
350 1 0.00
351 4 0.01
352 18 0.03
353 7 0.01
354 246 0.43
355 6 0.01
357 4 0.01
359 3 0.01
360 1 0.00
362 1 0.00
364 5 0.01
365 138 0.24
366 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (349 bp):
CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
AACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGAAGAATGCGCAAGCGGGGATCGACCC
GGTCCCCTCTACGTGCTGTCAATCCTGCTACGTAACCCTCGATCTGGTTCGATCTTAGACTGGGA
ATGAACTCCATATGCTTAGAATGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAAAGT
GCGGGCGCTTAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGC
ATGCTGTCGATCAGTGTGGTCCTG
Found at i:29808259 original size:26 final size:26
Alignment explanation
Indices: 29808218--29808270 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29808208 TCAGTTCAAT
29808218 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29808244 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
29808270 C
1 C
29808271 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29808943 original size:26 final size:26
Alignment explanation
Indices: 29808914--29808966 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29808904 CTGATCCGAT
*
29808914 CTTAGACT-GAGAATGAACTCTGTATG
1 CTTAGACTAG-GAATGAACTCTATATG
*
29808940 CTTAGACTAGGGATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
29808966 C
1 C
29808967 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:29809324 original size:25 final size:26
Alignment explanation
Indices: 29809296--29809346 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29809286 CGATCTGATA
29809296 TTAGAC-GGGAATGAACTCCATATGC
1 TTAGACAGGGAATGAACTCCATATGC
* *
29809321 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACAGGGAATGAACTCCATATGC
29809347 CTAAGTCAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCATATGC
Found at i:29809936 original size:26 final size:26
Alignment explanation
Indices: 29809898--29809948 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29809888 GTCTTATCTT
29809898 AGACTGAGAATGAACTCTATATGCTA
1 AGACTGAGAATGAACTCTATATGCTA
* * *
29809924 AGACTGGGGATGAACTCTGTATGCT
1 AGACTGAGAATGAACTCTATATGCT
29809949 TAAGTCAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
AGACTGAGAATGAACTCTATATGCTA
Found at i:29811156 original size:158 final size:159
Alignment explanation
Indices: 29810641--29811301 Score: 599
Period size: 159 Copynumber: 4.2 Consensus size: 159
29810631 ACTCTGTATG
* * *
29810641 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * ** * * *
29810705 CGGGCCGGAGAGATAGAATGCGCAAGCCGTGGATCGACTCGATCCTCCCCTGTGTACTATCGATC
65 CCGGTCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCC-CCCCTGCGTACTATCGATC
* * *
29810770 TTGCTACCACAACCCTCAGTCTGGTC-CAAT
129 CTGCTACCACAACCCTCAGTCCGGTCTCGAT
* * * * * * * *
29810800 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCATGTGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * *
29810865 CGATC-GAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGT-
66 CGGTCGGAA-AGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTACTATCGATC
* * * * **
29810928 CTCACTGCCACAACCCTCAGTCCAG-CTGGGG
129 CT-GCTACCACAACCCTCAGTCCGGTCTCGAT
* * *
29810959 CTTAGACAT-GGACTGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
29811023 CCGGTCGGAAAGGCAGAATGCACAAGCCG-GGTATCGACCCGATCCCCCCTACGTACTATCAATC
65 CCGGTCGGAAAGGCAGAATGCGCAAGCCGAGG-ATCGACCCGATCCCCCCTGCGTACTATCGATC
* *
29811087 CTGCTACCGCAACCCTCGGTCCGGTCT-GAT
129 CTGCTACCACAACCCTCAGTCCGGTCTCGAT
* * * * *
29811117 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGTGC-CGAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-AA
* * * * * * * *
29811181 CCAGTCGGAGAGGCATAATGCGCAGGCCGGGGATCGGA-CCGGTCCCCCCTGCGTGCTGTCGATC
65 CCGGTCGGAAAGGCAGAATGCGCAAGCCGAGGATC-GACCCGATCCCCCCTGCGTACTATCGATC
* ** *
29811245 CTGCTGCCGTAACCCTC-GATCCGAT-TCGAT
129 CTGCTACCACAACCCTCAG-TCCGGTCTCGAT
* *
29811275 CATAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
29811302 TTAGACTGGG
Statistics
Matches: 406, Mismatches: 80, Indels: 33
0.78 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 188 0.46
159 210 0.52
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGTCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTACTATCGATCCT
GCTACCACAACCCTCAGTCCGGTCTCGAT
Found at i:29811217 original size:317 final size:317
Alignment explanation
Indices: 29810640--29811241 Score: 850
Period size: 317 Copynumber: 1.9 Consensus size: 317
29810630 AACTCTGTAT
* * *
29810640 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAA
* * * * * ** *
29810705 CGGGCCGGAGAGATAGAATGCGCAAGCCGTGGATCGACTCGATCCTCCCCTGTGTACTATCGATC
66 CCGGCCGGAAAGACAGAATGCACAAGCCGTGGATCGACCCGATCCTCCCCTACGTACTATCAATC
* * *
29810770 TTGCTACCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
131 CTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * *
29810835 ACCCACGAAATGAGCATGTGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCG
196 ACCCACAAAATGAGCATGTGGGCGCCGAACCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCG
*
29810900 GCCCGATCCCCCTCTGCGTGCTGTCGGTCTCACTGCCACAACCCTCAGTCCAGCTGGG
261 GACCGATCCCCC-CTGCGTGCTGTCGGTCTCACTGCCACAACCCTCAGTCCAGCTGGG
* * *
29810958 GCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAA
* *
29811023 CCGGTCGGAAAGGCAGAATGCACAAGCCG-GGTATCGACCCGATCC-CCCCTACGTACTATCAAT
66 CCGGCCGGAAAGACAGAATGCACAAGCCGTGG-ATCGACCCGATCCTCCCCTACGTACTATCAAT
* * ** *
29811086 CCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
130 CCTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
* * * * *
29811151 AACCCACAAAATGAGCGTGTGGGTGCCGAACC-AGTCGGAGAGGCATAATGCGCAGGCCGGGGAT
195 AACCCACAAAATGAGCATGTGGGCGCCGAACCGA-TCGAAGAGGCATAATGCGCAAGCCGAGGAT
*
29811215 CGGACCGGTCCCCCCTGCGTGCTGTCG
259 CGGACCGATCCCCCCTGCGTGCTGTCG
29811242 ATCCTGCTGC
Statistics
Matches: 248, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
316 14 0.06
317 140 0.56
318 94 0.38
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGGAAAGACAGAATGCACAAGCCGTGGATCGACCCGATCCTCCCCTACGTACTATCAATC
CTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
ACCCACAAAATGAGCATGTGGGCGCCGAACCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCG
GACCGATCCCCCCTGCGTGCTGTCGGTCTCACTGCCACAACCCTCAGTCCAGCTGGG
Found at i:29811316 original size:26 final size:26
Alignment explanation
Indices: 29811277--29811327 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29811267 GATTCGATCA
*
29811277 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
29811303 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
29811328 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:29816554 original size:26 final size:26
Alignment explanation
Indices: 29816516--29816568 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29816506 GGCTCAAAAT
29816516 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29816542 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29816568 C
1 C
29816569 CTGAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.