Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 32 of 402
Found at i:6782236 original size:30 final size:29
Alignment explanation
Indices: 6782194--6782271 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 29
6782184 ATTAAATTAG
*
6782194 AAAAATAAAAACAAAAAA-AAGTAAAAAAGA
1 AAAAACAAAAACAAAAAACAA--AAAAAAGA
* *
6782224 TAAAACAAAAACAAAAAGACAAAAAGAAGA
1 AAAAACAAAAACAAAAA-ACAAAAAAAAGA
*
6782254 AAAAACAAAAATAAAAAA
1 AAAAACAAAAACAAAAAA
6782272 GAGCTTATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 1 0.02
30 37 0.90
31 1 0.02
32 2 0.05
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.05
Consensus pattern (29 bp):
AAAAACAAAAACAAAAAACAAAAAAAAGA
Found at i:6782528 original size:29 final size:30
Alignment explanation
Indices: 6782480--6782554 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 30
6782470 CTTATTTATG
* *
6782480 TATAAATATAGTATTTTTATTAAATTAAGATA
1 TATAAATA-A-TATTATTATTAAAATAAGATA
*
6782512 T-TAAATAATATTATTATTAAAATAATATA
1 TATAAATAATATTATTATTAAAATAAGATA
6782541 TATAAATAAATATT
1 TATAAAT-AATATT
6782555 TAAAACTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
29 19 0.50
30 6 0.16
31 12 0.32
32 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (30 bp):
TATAAATAATATTATTATTAAAATAAGATA
Found at i:6783148 original size:11 final size:11
Alignment explanation
Indices: 6783108--6783149 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
6783098 TATAAAAATC
*
6783108 TAAAAAAAT-G
1 TAAAAAAATAT
6783118 TAAAAAAATAT
1 TAAAAAAATAT
**
6783129 TAATTAAATAT
1 TAAAAAAATAT
6783140 TAAAAAAATA
1 TAAAAAAATA
6783150 AATAAATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (11 bp):
TAAAAAAATAT
Found at i:6783155 original size:19 final size:19
Alignment explanation
Indices: 6783091--6783165 Score: 66
Period size: 19 Copynumber: 3.9 Consensus size: 19
6783081 CAATAATATC
**
6783091 AAATAAATA-TAAAAATCT
1 AAATAAATATTAAAAAAAT
6783109 AAA-AAA-ATGTAAAAAAAT
1 AAATAAATAT-TAAAAAAAT
6783127 ATTAATTAAATATTAAAAAAAT
1 A--AA-TAAATATTAAAAAAAT
*
6783149 AAATAAATAATAAAAAA
1 AAATAAATATTAAAAAA
6783166 GAGAGAAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
16 1 0.02
17 3 0.06
18 11 0.23
19 13 0.28
20 4 0.09
22 13 0.28
23 2 0.04
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (19 bp):
AAATAAATATTAAAAAAAT
Found at i:6783615 original size:15 final size:15
Alignment explanation
Indices: 6783593--6783630 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
6783583 TTAAAATAAG
6783593 GAAAAAAAT-AAAAA
1 GAAAAAAATGAAAAA
*
6783607 GATAAAAAATGAAAAT
1 GA-AAAAAATGAAAAA
6783623 GAAAAAAA
1 GAAAAAAA
6783631 GGAAGTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 13 0.62
16 6 0.29
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (15 bp):
GAAAAAAATGAAAAA
Found at i:6783938 original size:19 final size:20
Alignment explanation
Indices: 6783902--6783939 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6783892 CATCTTTAAA
**
6783902 AAAAATAAAATTTGTTTATG
1 AAAAATAAAAAATGTTTATG
6783922 AAAAATAAAAAAT-TTTAT
1 AAAAATAAAAAATGTTTAT
6783940 TAAATTAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
AAAAATAAAAAATGTTTATG
Found at i:6784573 original size:6 final size:6
Alignment explanation
Indices: 6784564--6784658 Score: 64
Period size: 6 Copynumber: 15.8 Consensus size: 6
6784554 TAATTTGGAT
* * * * * *
6784564 TTTTAG TTTTAA TTTTGA TTTTAA TTTTGA TTTTGA TTCTAA TTTTGA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
* * * * * * * *
6784612 TTTTGA TTTTGA TGTTGA TTTTAT TTTTAG TTTTAT TTTTAA GTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
6784659 GTCAAAGTCA
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 73 1.00
ACGTcount: A:0.21, C:0.01, G:0.12, T:0.66
Consensus pattern (6 bp):
TTTTAA
Found at i:6784585 original size:12 final size:12
Alignment explanation
Indices: 6784556--6784638 Score: 87
Period size: 12 Copynumber: 6.9 Consensus size: 12
6784546 AAAAAATTTA
* *
6784556 ATTTGGATTTTT
1 ATTTTGATTTTG
*
6784568 AGTTTTAATTTTG
1 A-TTTTGATTTTG
*
6784581 ATTTTAATTTTG
1 ATTTTGATTTTG
* *
6784593 ATTTTGATTCTA
1 ATTTTGATTTTG
6784605 ATTTTGATTTTG
1 ATTTTGATTTTG
*
6784617 ATTTTGATGTTG
1 ATTTTGATTTTG
6784629 ATTTT-ATTTT
1 ATTTTGATTTT
6784639 TAGTTTTATT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
11 4 0.07
12 47 0.78
13 9 0.15
ACGTcount: A:0.20, C:0.01, G:0.13, T:0.65
Consensus pattern (12 bp):
ATTTTGATTTTG
Found at i:6784591 original size:18 final size:18
Alignment explanation
Indices: 6784552--6784621 Score: 86
Period size: 18 Copynumber: 3.8 Consensus size: 18
6784542 GCCTAAAAAA
* *
6784552 TTTAATTTGGATTTTTAGT
1 TTTAATTTTGA-TTTTAAT
6784571 TTTAATTTTGATTTTAAT
1 TTTAATTTTGATTTTAAT
* *
6784589 TTTGATTTTGATTCTAAT
1 TTTAATTTTGATTTTAAT
*
6784607 TTTGATTTTGATTTT
1 TTTAATTTTGATTTT
6784622 GATGTTGATT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
18 36 0.78
19 10 0.22
ACGTcount: A:0.21, C:0.01, G:0.11, T:0.66
Consensus pattern (18 bp):
TTTAATTTTGATTTTAAT
Found at i:6784629 original size:18 final size:18
Alignment explanation
Indices: 6784564--6784638 Score: 98
Period size: 18 Copynumber: 4.2 Consensus size: 18
6784554 TAATTTGGAT
* *
6784564 TTTTAGTTTTAATTTTGA
1 TTTTAATTTTGATTTTGA
6784582 TTTTAATTTTGATTTTGA
1 TTTTAATTTTGATTTTGA
*
6784600 TTCTAATTTTGATTTTGA
1 TTTTAATTTTGATTTTGA
* *
6784618 TTTTGATGTTGATTTT-A
1 TTTTAATTTTGATTTTGA
6784635 TTTT
1 TTTT
6784639 TAGTTTTATT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
17 5 0.10
18 46 0.90
ACGTcount: A:0.20, C:0.01, G:0.12, T:0.67
Consensus pattern (18 bp):
TTTTAATTTTGATTTTGA
Found at i:6785702 original size:20 final size:20
Alignment explanation
Indices: 6785677--6785783 Score: 136
Period size: 20 Copynumber: 5.5 Consensus size: 20
6785667 TTTTGCATGA
6785677 ATTTGCATGATTATTGATAT
1 ATTTGCATGATTATTGATAT
6785697 ATTTGCATGATTATTGATAT
1 ATTTGCATGATTATTGATAT
*
6785717 ATTTGCATGATTATTAATAT
1 ATTTGCATGATTATTGATAT
*
6785737 ATTTGCCTGA-T-TTG-T-T
1 ATTTGCATGATTATTGATAT
6785753 ATTTGCATGATTTATT-A-AGT
1 ATTTGCATGA-TTATTGATA-T
6785773 ATTTGCATGAT
1 ATTTGCATGAT
6785784 ATTTGTGCTT
Statistics
Matches: 77, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
16 10 0.13
17 1 0.01
18 3 0.04
19 4 0.05
20 59 0.77
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (20 bp):
ATTTGCATGATTATTGATAT
Found at i:6795526 original size:27 final size:25
Alignment explanation
Indices: 6795496--6795547 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 25
6795486 AAAGAAAATC
6795496 TAAAAATAAAATAAATAAGAATGAAAA
1 TAAAAATAAAATAAA-AA-AATGAAAA
*
6795523 TAAAAATAAAATGAAAAAATGAAAA
1 TAAAAATAAAATAAAAAAATGAAAA
6795548 ACCTACAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.33
26 2 0.08
27 14 0.58
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (25 bp):
TAAAAATAAAATAAAAAAATGAAAA
Found at i:6797564 original size:17 final size:17
Alignment explanation
Indices: 6797542--6797574 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6797532 AATTTGCAAC
6797542 AATGAAAGATTCACAAG
1 AATGAAAGATTCACAAG
*
6797559 AATGAAATATTCACAA
1 AATGAAAGATTCACAA
6797575 AATCTCAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.21
Consensus pattern (17 bp):
AATGAAAGATTCACAAG
Found at i:6797811 original size:66 final size:66
Alignment explanation
Indices: 6797702--6797894 Score: 210
Period size: 66 Copynumber: 2.9 Consensus size: 66
6797692 AAATTTAAAA
* * * * * * *
6797702 AGTCAGAAAGAT-AAAGTCACCAAGATTGAGTTAAGGTCAAAGATGAATGACCGGGGTCGAA-TG
1 AGTCAGAAAGATGAAA-TGACCAGGACTGAGTCAAGGTCGAAGATGAATGACCGGGATCAAACT-
*
6797765 ATG
64 ACG
* *
6797768 AGTCAGAAAGATGAAATGACTAGGACTGAGTCAAGGTCGAAGATGAATGATCGGGATCAAACTAC
1 AGTCAGAAAGATGAAATGACCAGGACTGAGTCAAGGTCGAAGATGAATGACCGGGATCAAACTAC
6797833 G
66 G
* * * * **
6797834 AGTTAGAAAGATGAAGTGACCAGGACTGAGTCAAGGTCGAAAATGAGTGACCAAGATCAAA
1 AGTCAGAAAGATGAAATGACCAGGACTGAGTCAAGGTCGAAGATGAATGACCGGGATCAAA
6797895 TCGTGATTAA
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
66 103 0.96
67 4 0.04
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.18
Consensus pattern (66 bp):
AGTCAGAAAGATGAAATGACCAGGACTGAGTCAAGGTCGAAGATGAATGACCGGGATCAAACTAC
G
Found at i:6798261 original size:66 final size:66
Alignment explanation
Indices: 6798009--6798340 Score: 174
Period size: 65 Copynumber: 5.1 Consensus size: 66
6797999 TGAGTAACCG
* * * * * * * *
6798009 GGATCGAACTATGAATCAAAAAGACAAAGCAA-CAGGATCGAGTTAAGGTCGAAGATGAACGACT
1 GGATCGAACCATGAGTCAGAAAGATAAAACAACCAGGATCAAGTCAAGGTCGAAGATGAATGACT
6798073 A
66 A
** * * * *** * * * *
6798074 TAATTGAACCACGAGTCAAAAAGATAAAGTGACCAAGATCAAGTCGAGGTTGAAAATGAATGA-T
1 GGATCGAACCATGAGTCAGAAAGATAAAACAACCAGGATCAAGTCAAGGTCGAAGATGAATGACT
*
6798138 CG
66 -A
* * * * * * * ** ** *
6798140 GGGTCAAACC-CGAGTC-GAAAAGATGAAACTA-CAAGTTACATTTCCTGGTCAAAGATGAATGA
1 GGATCGAACCATGAGTCAG-AAAGATAAAACAACCAGGAT-CAAGTCAAGGTCGAAGATGAATGA
6798202 CT-
64 CTA
* * * * **
6798204 GAGATCGAACCATGAGTCAGAAAGATAAAACGACTATGATCGAGTTGAGGTCGAAGATG-ATGAC
1 G-GATCGAACCATGAGTCAGAAAGATAAAACAACCAGGATCAAGTCAAGGTCGAAGATGAATGAC
6798268 TA
65 TA
* * * * * *
6798270 GGGTCGAACTATGATTTAGAAAGATAAAATAACCAGGATCAAGTCAAGGTTGAAGATGAATGACT
1 GGATCGAACCATGAGTCAGAAAGATAAAACAACCAGGATCAAGTCAAGGTCGAAGATGAATGACT
6798335 A
66 A
6798336 GGATC
1 GGATC
6798341 ATACTGCAAT
Statistics
Matches: 193, Mismatches: 63, Indels: 21
0.70 0.23 0.08
Matches are distributed among these distances:
64 6 0.03
65 114 0.59
66 69 0.36
67 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (66 bp):
GGATCGAACCATGAGTCAGAAAGATAAAACAACCAGGATCAAGTCAAGGTCGAAGATGAATGACT
A
Found at i:6799153 original size:16 final size:16
Alignment explanation
Indices: 6799132--6799190 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
6799122 TAAGTCTCCC
**
6799132 TTTTTTCTTTTTTTTT
1 TTTTTTCTTTTTAATT
6799148 TTTTTTGC-TTTTAACTT
1 TTTTTT-CTTTTTAA-TT
*
6799165 TTTTTTCTTTTTCATT
1 TTTTTTCTTTTTAATT
6799181 TTTTTTCTTT
1 TTTTTTCTTT
6799191 GTACACCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
16 23 0.62
17 14 0.38
ACGTcount: A:0.05, C:0.10, G:0.02, T:0.83
Consensus pattern (16 bp):
TTTTTTCTTTTTAATT
Found at i:6799183 original size:24 final size:24
Alignment explanation
Indices: 6799138--6799183 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
6799128 TCCCTTTTTT
* **
6799138 CTTTTTTTTTTTTTTTGCTTTTAA
1 CTTTTTTTTCTTTTTCACTTTTAA
*
6799162 CTTTTTTTTCTTTTTCATTTTT
1 CTTTTTTTTCTTTTTCACTTTT
6799184 TTTCTTTGTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (24 bp):
CTTTTTTTTCTTTTTCACTTTTAA
Found at i:6799226 original size:12 final size:14
Alignment explanation
Indices: 6799198--6799229 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
6799188 TTTGTACACC
6799198 TCTTTCTCATATTT
1 TCTTTCTCATATTT
6799212 TCTTT-TCAT-TTT
1 TCTTTCTCATATTT
6799224 TCTTTC
1 TCTTTC
6799230 CCCTTTATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 8 0.47
13 4 0.24
14 5 0.29
ACGTcount: A:0.09, C:0.22, G:0.00, T:0.69
Consensus pattern (14 bp):
TCTTTCTCATATTT
Found at i:6799519 original size:11 final size:11
Alignment explanation
Indices: 6799503--6799545 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
6799493 CTTTGCTTCC
6799503 TTTCTTTTTTT
1 TTTCTTTTTTT
6799514 TTTC--TTTTT
1 TTTCTTTTTTT
*
6799523 TTTCCTTTTTT
1 TTTCTTTTTTT
6799534 TTTCTTTTTTT
1 TTTCTTTTTTT
6799545 T
1 T
6799546 ATTATTTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 9 0.31
11 20 0.69
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:6799521 original size:9 final size:9
Alignment explanation
Indices: 6799509--6799545 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
6799499 TTCCTTTCTT
6799509 TTTTTTTTC
1 TTTTTTTTC
6799518 TTTTTTTTCC
1 TTTTTTTT-C
6799528 TTTTTTTTTC
1 -TTTTTTTTC
6799538 TTTTTTTT
1 TTTTTTTT
6799546 ATTATTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 16 0.62
10 2 0.08
11 8 0.31
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:6799523 original size:10 final size:10
Alignment explanation
Indices: 6799503--6799545 Score: 68
Period size: 10 Copynumber: 4.2 Consensus size: 10
6799493 CTTTGCTTCC
6799503 TTTCTTTTTTT
1 TTTC-TTTTTT
6799514 TTTCTTTTTT
1 TTTCTTTTTT
*
6799524 TTCCTTTTTT
1 TTTCTTTTTT
6799534 TTTCTTTTTT
1 TTTCTTTTTT
6799544 TT
1 TT
6799546 ATTATTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 26 0.87
11 4 0.13
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:6799531 original size:20 final size:20
Alignment explanation
Indices: 6799503--6799545 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
6799493 CTTTGCTTCC
*
6799503 TTTCTTTTTTTTTTCTTTTT
1 TTTCCTTTTTTTTTCTTTTT
6799523 TTTCCTTTTTTTTTCTTTTT
1 TTTCCTTTTTTTTTCTTTTT
6799543 TTT
1 TTT
6799546 ATTATTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (20 bp):
TTTCCTTTTTTTTTCTTTTT
Found at i:6802732 original size:223 final size:222
Alignment explanation
Indices: 6802343--6802793 Score: 839
Period size: 223 Copynumber: 2.0 Consensus size: 222
6802333 AAGACTTGGA
6802343 AAATAAGAAATCATTTACTGGCCCTACTCTTATTGTCTTCAATAGAGTCGCCAAACTATCATAAC
1 AAATAAGAAATCATTTACTGGCCCTACTCTTATTGTCTTCAATAGAGTCGCCAAACTATCATAAC
6802408 ATATAAATCTGTAAACCTACCGCTAGATATAGTTTTTAGCAGTCGCCACCAATCTTTTTTATTTA
66 ATATAAATCTGTAAACCTACCGCTAGATATAGTTTTTAGCAGTCGCCACCAATCTTTTTTATTTA
*
6802473 GGTGTGATTGGCCACCTGATTGAATTTGTTCCATTTAAAGAGGAGTCCTAAGATTGACTTAGGTA
131 GGTGTGATTGGCCACCTGATTGAATTTGTCCCATTTAAAGAGGAGTCCTAAGATTGACTTAGGTA
6802538 TCTTTAAATAGTATATTCTGATCCACG
196 TCTTTAAATAGTATATTCTGATCCACG
6802565 ATAATAAGAAATCATTTACTGGCCCTACTCTTATTGTCTTCAATAGAGTCGCCAAACTATCATAA
1 A-AATAAGAAATCATTTACTGGCCCTACTCTTATTGTCTTCAATAGAGTCGCCAAACTATCATAA
* * * *
6802630 CATATAAATCTGTAAACTTACCGCTAGATATGGTTTTTAGGAGTCGCCACCAATCTTTTTTGTTT
65 CATATAAATCTGTAAACCTACCGCTAGATATAGTTTTTAGCAGTCGCCACCAATCTTTTTTATTT
6802695 AGGTGTGATTGGCCACCTGATTGAATTTGTCCCATTTAAAGAGGAGTCCTAAGATTGACTTAGGT
130 AGGTGTGATTGGCCACCTGATTGAATTTGTCCCATTTAAAGAGGAGTCCTAAGATTGACTTAGGT
*
6802760 ATCTTTAAATAGTATATTCTGATCCATG
195 ATCTTTAAATAGTATATTCTGATCCACG
6802788 AAATAA
1 AAATAA
6802794 ATTTTAGGTT
Statistics
Matches: 222, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
222 6 0.03
223 216 0.97
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (222 bp):
AAATAAGAAATCATTTACTGGCCCTACTCTTATTGTCTTCAATAGAGTCGCCAAACTATCATAAC
ATATAAATCTGTAAACCTACCGCTAGATATAGTTTTTAGCAGTCGCCACCAATCTTTTTTATTTA
GGTGTGATTGGCCACCTGATTGAATTTGTCCCATTTAAAGAGGAGTCCTAAGATTGACTTAGGTA
TCTTTAAATAGTATATTCTGATCCACG
Found at i:6803510 original size:27 final size:26
Alignment explanation
Indices: 6803460--6803544 Score: 84
Period size: 27 Copynumber: 3.0 Consensus size: 26
6803450 GGCATTAAAT
6803460 AAATAATTAATTAAAATTAAAATAAGTA
1 AAATAA-TAATTAAAATTAAAATAA-TA
6803488 AAATAATAATTAAAGATATAATAATAATA
1 AAATAATAATTAAA-AT-TAA-AATAATA
6803517 ATAATAATAA-TAATAA-TAATAATAATA
1 A-AATAATAATTAA-AATTAA-AATAATA
6803544 A
1 A
6803545 TAGTAATAGT
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
27 20 0.38
28 8 0.15
29 10 0.19
30 14 0.27
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (26 bp):
AAATAATAATTAAAATTAAAATAATA
Found at i:6803516 original size:6 final size:6
Alignment explanation
Indices: 6803480--6803595 Score: 114
Period size: 6 Copynumber: 19.3 Consensus size: 6
6803470 TTAAAATTAA
6803480 AATAAGT AA-AAT AATAATT AA-AGAT -ATAAT AATAAT AATAAT AATAAT
1 AATAA-T AATAAT AATAA-T AATA-AT AATAAT AATAAT AATAAT AATAAT
* * * * *
6803528 AATAAT AATAAT AATAAT AGTAAT AGTAAT AGTAAT AGTAAT AGTAAT
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
*
6803576 AATAAT AGTAAGT AA-AAT AA
1 AATAAT AATAA-T AATAAT AA
6803596 AAGAAAATCT
Statistics
Matches: 99, Mismatches: 4, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
5 9 0.09
6 82 0.83
7 8 0.08
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (6 bp):
AATAAT
Found at i:6803655 original size:19 final size:20
Alignment explanation
Indices: 6803606--6803657 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
6803596 AAGAAAATCT
6803606 AAAAATATAATAAATAAGAATG
1 AAAAATA-AA-AAATAAGAATG
*
6803628 -AAAACAAAAAATAA-AATG
1 AAAAATAAAAAATAAGAATG
6803646 AAAAATAAAAAA
1 AAAAATAAAAAA
6803658 CTTGAGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 4 0.15
19 16 0.59
20 2 0.07
21 5 0.19
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAAAATAAAAAATAAGAATG
Found at i:6804831 original size:51 final size:51
Alignment explanation
Indices: 6804801--6804907 Score: 162
Period size: 51 Copynumber: 2.1 Consensus size: 51
6804791 ATTTGATTTA
*
6804801 ATTTTAATATGAATTGATTTTGAAATTAAATCTCAAAATTTTCTTAACATT
1 ATTTTAATATAAATTGATTTTGAAATTAAATCTCAAAATTTTCTTAACATT
* * *
6804852 ATTTTAATGTAAATTGATTTTGAAATTAAATCCCAAAAATTTT-TTAACATC
1 ATTTTAATATAAATTGATTTTGAAATTAAATCTC-AAAATTTTCTTAACATT
6804903 ATTTT
1 ATTTT
6804908 CACCAGATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
51 43 0.84
52 8 0.16
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (51 bp):
ATTTTAATATAAATTGATTTTGAAATTAAATCTCAAAATTTTCTTAACATT
Found at i:6807155 original size:20 final size:20
Alignment explanation
Indices: 6807130--6807170 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
6807120 CAATATAAAT
6807130 TACAGATTACAAAATTACAA
1 TACAGATTACAAAATTACAA
* *
6807150 TACAGATTATAAGATTACAA
1 TACAGATTACAAAATTACAA
6807170 T
1 T
6807171 CAGTTGTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.29
Consensus pattern (20 bp):
TACAGATTACAAAATTACAA
Found at i:6807298 original size:21 final size:21
Alignment explanation
Indices: 6807274--6807360 Score: 56
Period size: 21 Copynumber: 4.1 Consensus size: 21
6807264 ATATTATTAT
6807274 TATTATAGTAGTATAGTATAA
1 TATTATAGTAGTATAGTATAA
* **
6807295 TATTAT-GTTAGTATGGTATTGT
1 TATTATAG-TAGTATAGTA-TAA
* *
6807317 TATTATTATTACTAATAGTAT--
1 TATTA-TAGTAGT-ATAGTATAA
*
6807338 TATTATATTA-TATAGTATAA
1 TATTATAGTAGTATAGTATAA
6807358 TAT
1 TAT
6807361 ATTATATTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
18 7 0.13
19 1 0.02
20 9 0.17
21 20 0.38
22 6 0.11
23 5 0.09
24 5 0.09
ACGTcount: A:0.37, C:0.01, G:0.11, T:0.51
Consensus pattern (21 bp):
TATTATAGTAGTATAGTATAA
Found at i:6807324 original size:3 final size:3
Alignment explanation
Indices: 6807311--6807486 Score: 64
Period size: 3 Copynumber: 59.3 Consensus size: 3
6807301 GTTAGTATGG
* * * * *
6807311 TAT TGT TAT TAT TAT TAC TAA TAG TAT TAT TA- TAT TAT ATAG TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * * * *
6807356 AAT ATAT TA- TAT TGT ATAT TAT TAT TAT T-G TAGCC TAC TAG TAT TAT
1 TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT
* *
6807403 TAT TA- TAT T-T T-T TAT TAT TA- TATT TAT CAT TAT TAT TA- TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * * *
6807444 TAT ATAT TA- TAT TAC AAT TAC AAC TAT TAT TAT TAT TAT TAT T
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
6807487 TTTTTTTTTG
Statistics
Matches: 131, Mismatches: 27, Indels: 30
0.70 0.14 0.16
Matches are distributed among these distances:
2 17 0.13
3 101 0.77
4 11 0.08
5 2 0.02
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:6807363 original size:17 final size:17
Alignment explanation
Indices: 6807317--6807383 Score: 71
Period size: 17 Copynumber: 3.6 Consensus size: 17
6807307 ATGGTATTGT
6807317 TATTATTATTACTAATAGTA
1 TATTA-TATTA-T-ATAGTA
6807337 TTATTATATTATATAGTA
1 -TATTATATTATATAGTA
* *
6807355 TAATATATTATATTGTA
1 TATTATATTATATAGTA
6807372 TATTATTATTAT
1 TATTA-TATTAT
6807384 TGTAGCCTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
17 19 0.45
18 12 0.29
19 1 0.02
20 5 0.12
21 5 0.12
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (17 bp):
TATTATATTATATAGTA
Found at i:6807850 original size:28 final size:28
Alignment explanation
Indices: 6807818--6807882 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
6807808 ATTTTGGAAA
6807818 GTTTTTGGAATTTTGGGTTGATATTTAG
1 GTTTTTGGAATTTTGGGTTGATATTTAG
6807846 GTTTTTGGAATTTTGGGTTGATATTTAG
1 GTTTTTGGAATTTTGGGTTGATATTTAG
6807874 GTTTTTGGA
1 GTTTTTGGA
6807883 GTTTAAGGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.54
Consensus pattern (28 bp):
GTTTTTGGAATTTTGGGTTGATATTTAG
Found at i:6808288 original size:5 final size:5
Alignment explanation
Indices: 6808273--6808320 Score: 51
Period size: 5 Copynumber: 8.6 Consensus size: 5
6808263 GATCGTAGGT
6808273 TTTTAA TTTTA TTTTA TTTTA TTTTAA GTTTTAA TTTTTA TTTTA TTT
1 TTTT-A TTTTA TTTTA TTTTA TTTT-A -TTTT-A -TTTTA TTTTA TTT
6808321 CCAATTTTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
5 23 0.59
6 6 0.15
7 10 0.26
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:6808328 original size:24 final size:22
Alignment explanation
Indices: 6808277--6808342 Score: 64
Period size: 24 Copynumber: 3.0 Consensus size: 22
6808267 GTAGGTTTTT
*
6808277 AATTTTA-TTTTATTTTATTTT
1 AATTTTATTTTTATTTTATTTC
6808298 AAGTTTTAATTTTTATTTTATTTCC
1 AA-TTTT-ATTTTTATTTTATTT-C
* *
6808323 AATTTTGTTTTT-TATTATTT
1 AATTTTATTTTTATTTTATTT
6808343 TATTGATCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 2 0.05
22 11 0.29
23 6 0.16
24 17 0.45
25 2 0.05
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (22 bp):
AATTTTATTTTTATTTTATTTC
Found at i:6812934 original size:17 final size:17
Alignment explanation
Indices: 6812907--6812950 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
6812897 TATGGTGGAG
6812907 CAATT-GAATAAGATGC
1 CAATTAGAATAAGATGC
6812923 CAATTAGAATAAGATGC
1 CAATTAGAATAAGATGC
6812940 CAATTAGAATA
1 CAATTAGAATA
6812951 TCTTTGCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.19
17 22 0.81
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (17 bp):
CAATTAGAATAAGATGC
Found at i:6818838 original size:37 final size:35
Alignment explanation
Indices: 6818765--6818854 Score: 92
Period size: 37 Copynumber: 2.5 Consensus size: 35
6818755 ATTATAGTGG
* * * *
6818765 TATAGTATAATATTATGTTAGTATGGTATTATTAT
1 TATAGTATATTATTATATTAGTATAGTATAATTAT
6818800 TACTAGTAGTATTATTATATTA-TATAGTATAATATAT
1 TA-TAGTA-TATTATTATATTAGTATAGTATAAT-TAT
6818837 TATATTGTATATTATTAT
1 TATA--GTATATTATTAT
6818855 TATTGTAGCC
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
35 2 0.04
36 16 0.35
37 25 0.54
38 3 0.07
ACGTcount: A:0.37, C:0.01, G:0.10, T:0.52
Consensus pattern (35 bp):
TATAGTATATTATTATATTAGTATAGTATAATTAT
Found at i:6818856 original size:43 final size:40
Alignment explanation
Indices: 6818809--6818928 Score: 102
Period size: 43 Copynumber: 2.9 Consensus size: 40
6818799 TTACTAGTAG
* *
6818809 TATTATTATATTATATAGTATAATATATTATATTGTATAT
1 TATTATTATATTATATAGTATAATATATTATATTTTTTAT
*
6818849 TATTATTAT-TGTAGCCTACTAGTATTAT-TATTATATTTTTTAT
1 TATTATTATAT-TA---TA-TAGTATAATATATTATATTTTTTAT
*
6818892 TATTATTTATCATTAT-TATTATACTATATATTATATT
1 TATTA-TTAT-ATTATATAGTATA--ATATATTATATT
6818929 ACTATTACAA
Statistics
Matches: 64, Mismatches: 5, Indels: 19
0.73 0.06 0.22
Matches are distributed among these distances:
39 1 0.02
40 16 0.25
42 3 0.05
43 29 0.45
44 12 0.19
45 2 0.03
46 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (40 bp):
TATTATTATATTATATAGTATAATATATTATATTTTTTAT
Found at i:6818952 original size:3 final size:3
Alignment explanation
Indices: 6818791--6818935 Score: 54
Period size: 3 Copynumber: 48.7 Consensus size: 3
6818781 GTTAGTATGG
* * * * *
6818791 TAT TAT TAT TAC TAG TAG TAT TAT TA- TAT TAT ATAG TAT AAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * *
6818837 TA- TAT TGT ATAT TAT TAT TAT T-G TAGCC TAC TAG TAT TAT TAT TA-
1 TAT TAT TAT -TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT TAT TAT
* *
6818882 TAT T-T T-T TAT TAT TATT TAT CAT TAT TAT TA- TAC TAT ATAT TA-
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT
*
6818925 TAT TAC TAT TA
1 TAT TAT TAT TA
6818936 CAACTATCAT
Statistics
Matches: 110, Mismatches: 18, Indels: 28
0.71 0.12 0.18
Matches are distributed among these distances:
2 15 0.14
3 81 0.74
4 12 0.11
5 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:6818976 original size:16 final size:15
Alignment explanation
Indices: 6818951--6818981 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
6818941 ATCATTATTA
6818951 TTTTTTTTTTTTGTT
1 TTTTTTTTTTTTGTT
6818966 TTTTTTCTTTTTTGTT
1 TTTTTT-TTTTTTGTT
6818982 CTAATCTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTTTGTT
Found at i:6819751 original size:19 final size:19
Alignment explanation
Indices: 6819724--6819763 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6819714 GATCGCAGGC
* *
6819724 TTTTCTTTTTTCATTTTAT
1 TTTTATTTTTTCATTTGAT
*
6819743 TTTTATTTTTTTATTTGAT
1 TTTTATTTTTTCATTTGAT
6819762 TT
1 TT
6819764 GATTTGATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.12, C:0.05, G:0.03, T:0.80
Consensus pattern (19 bp):
TTTTATTTTTTCATTTGAT
Found at i:6820978 original size:50 final size:51
Alignment explanation
Indices: 6820924--6821034 Score: 120
Period size: 50 Copynumber: 2.2 Consensus size: 51
6820914 GAAACGTAAT
* *
6820924 TTTTATTAAAAAAT-TATAAATATTGCATTTTTAAAAGTAAAAATGT-GATC
1 TTTTATTAAAAAATAAATAAATATTACATTTTTAAAAGTAAAAATGTAG-TC
* * ** *
6820974 TTTTA-TCAAAAATAAATAAATATTACGTTTTTGTAAGTAAAATTGTAGTC
1 TTTTATTAAAAAATAAATAAATATTACATTTTTAAAAGTAAAAATGTAGTC
*
6821024 TTTAATTAAAA
1 TTTTATTAAAA
6821035 TATATATATA
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
49 7 0.14
50 37 0.76
51 5 0.10
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (51 bp):
TTTTATTAAAAAATAAATAAATATTACATTTTTAAAAGTAAAAATGTAGTC
Found at i:6821730 original size:23 final size:23
Alignment explanation
Indices: 6821680--6821730 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
6821670 TAAACATATG
6821680 TTGAATTTGGACATGAGCCACAT
1 TTGAATTTGGACATGAGCCACAT
* **
6821703 ATGAATTTGGACATGAGTTACAT
1 TTGAATTTGGACATGAGCCACAT
6821726 TTGAA
1 TTGAA
6821731 CATATATCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (23 bp):
TTGAATTTGGACATGAGCCACAT
Found at i:6822405 original size:2 final size:2
Alignment explanation
Indices: 6822398--6822465 Score: 73
Period size: 2 Copynumber: 34.0 Consensus size: 2
6822388 TTCTTAGGTT
* * * * * *
6822398 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TG TG TA TG TG TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
6822440 TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
6822466 AAACGTTTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (2 bp):
TA
Found at i:6830850 original size:47 final size:45
Alignment explanation
Indices: 6830785--6830878 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 45
6830775 TTCCAAATGT
*
6830785 TTATAGTATCAATATGCATATTTTTTACAACAAGATATATTAGCAAA
1 TTATAGTACCAATATGCATATTTTTTACAA-AA-ATATATTAGCAAA
* **
6830832 TTATAGTGCCAATATGCATATTTTTTATTAAAATATATTAGCAAA
1 TTATAGTACCAATATGCATATTTTTTACAAAAATATATTAGCAAA
6830877 TT
1 TT
6830879 CTATTAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
45 15 0.35
46 2 0.05
47 26 0.60
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (45 bp):
TTATAGTACCAATATGCATATTTTTTACAAAAATATATTAGCAAA
Found at i:6833324 original size:2 final size:2
Alignment explanation
Indices: 6833317--6833343 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6833307 AAATAAAATT
6833317 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6833344 TTTCAACAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6834840 original size:27 final size:26
Alignment explanation
Indices: 6834792--6834848 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 26
6834782 CTATTGAAAG
*
6834792 AGAAGAAAAGTGACAGAATGGGAAGA
1 AGAAGAAAAGAGACAGAATGGGAAGA
*
6834818 AGAAGAAAGAGAGATAGAATGGGAAGA
1 AGAAGAAA-AGAGACAGAATGGGAAGA
6834845 AGAA
1 AGAA
6834849 AAGTGAAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.56, C:0.02, G:0.35, T:0.07
Consensus pattern (26 bp):
AGAAGAAAAGAGACAGAATGGGAAGA
Found at i:6836039 original size:52 final size:52
Alignment explanation
Indices: 6835949--6836095 Score: 174
Period size: 52 Copynumber: 2.8 Consensus size: 52
6835939 TATAATCATA
* * **
6835949 CAAACTTGCCCATTAAGAAT-CCTTCTCCTCTTACAATTCTTTTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCTT-TCCTCTTACAATTCTTCTCCTACAAGT
* * *
6836001 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTACAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTACAATTCTTCTCCTACAAGT
*
6836053 CAAACTTACCTATTAAGAATCCTCTTT-CTCTTGA-AATTCTTCT
1 CAAACTTGCCTATTAAGAATCC-CTTTCCTCTT-ACAATTCTTCT
6836096 TTTGCAAGTC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
52 74 0.89
53 9 0.11
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTTTCCTCTTACAATTCTTCTCCTACAAGT
Found at i:6836432 original size:24 final size:25
Alignment explanation
Indices: 6836391--6836481 Score: 85
Period size: 25 Copynumber: 3.7 Consensus size: 25
6836381 TACTTCTCAA
* *
6836391 ATCTCGTACTTTCAGCTCTTT-CAC
1 ATCTCGAACCTTCAGCTCTTTCCAC
*
6836415 ATCTCGAACCTTCGGCTCTTTCCAC
1 ATCTCGAACCTTCAGCTCTTTCCAC
* * * *
6836440 ATCTTGAATCTTCAACTCTTTTCAC
1 ATCTCGAACCTTCAGCTCTTTCCAC
* * *
6836465 GTTTCTAACCTTCAGCT
1 ATCTCGAACCTTCAGCT
6836482 TTAATACCAT
Statistics
Matches: 52, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
24 18 0.35
25 34 0.65
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.40
Consensus pattern (25 bp):
ATCTCGAACCTTCAGCTCTTTCCAC
Found at i:6836452 original size:25 final size:24
Alignment explanation
Indices: 6836391--6836452 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
6836381 TACTTCTCAA
* * *
6836391 ATCTCGTACTTTCAGCTCTTTCAC
1 ATCTCGAACCTTCGGCTCTTTCAC
6836415 ATCTCGAACCTTCGGCTCTTTCCAC
1 ATCTCGAACCTTCGGCTCTTT-CAC
* *
6836440 ATCTTGAATCTTC
1 ATCTCGAACCTTC
6836453 AACTCTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.18, C:0.34, G:0.10, T:0.39
Consensus pattern (24 bp):
ATCTCGAACCTTCGGCTCTTTCAC
Found at i:6837045 original size:51 final size:51
Alignment explanation
Indices: 6836985--6837130 Score: 170
Period size: 51 Copynumber: 2.8 Consensus size: 51
6836975 TATAATCATA
* * *
6836985 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAAAATTTTTTTCTGT-AAGT
1 CAAACTTGCCTATTAAGAATCCCTCTCCTCTTAAAATTCTTCTCT-TAAAGT
* * *
6837036 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTACAAGT
1 CAAACTTGCCTATTAAGAATCCCTCTCCTCTTAAAATTCTTCTCTTA-AAGT
* * *
6837088 CAAACTTACCTATTAAGAAT-CCTCTTTCTCTTGAAATTCTTCT
1 CAAACTTGCCTATTAAGAATCCCTC-TCCTCTTAAAATTCTTCT
6837131 TTTGCAAGTC
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
50 1 0.01
51 42 0.52
52 37 0.46
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.40
Consensus pattern (51 bp):
CAAACTTGCCTATTAAGAATCCCTCTCCTCTTAAAATTCTTCTCTTAAAGT
Found at i:6837100 original size:52 final size:51
Alignment explanation
Indices: 6836985--6837140 Score: 174
Period size: 52 Copynumber: 3.0 Consensus size: 51
6836975 TATAATCATA
* * * * *
6836985 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAAAATTTTTTTCTGT-AAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCT-TCAAGT
*
6837036 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTACAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCTT-CAAGT
* *
6837088 CAAACTTACCTATTAAGAATCCTCTTT-CTCTT-GAAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-CTTTCCTCTTAG-AATTCTTCTCTT-CAAGT
6837140 C
1 C
6837141 TTCTTATCCA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
50 1 0.01
51 40 0.44
52 46 0.51
53 4 0.04
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (51 bp):
CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCTTCAAGT
Found at i:6837181 original size:11 final size:11
Alignment explanation
Indices: 6837165--6837195 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
6837155 GTAATATCTG
6837165 ACAAATCTCAA
1 ACAAATCTCAA
6837176 ACAAATCTCAA
1 ACAAATCTCAA
6837187 ACAAATCTC
1 ACAAATCTC
6837196 TTATGAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:6837478 original size:24 final size:25
Alignment explanation
Indices: 6837437--6837527 Score: 85
Period size: 25 Copynumber: 3.7 Consensus size: 25
6837427 TACTTCTCAA
* *
6837437 ATCTCGTACTTTCAGCTCTTT-CAC
1 ATCTCGAACCTTCAGCTCTTTCCAC
*
6837461 ATCTCGAACCTTCGGCTCTTTCCAC
1 ATCTCGAACCTTCAGCTCTTTCCAC
* * * *
6837486 ATCTTGAATCTTCAACTCTTTTCAC
1 ATCTCGAACCTTCAGCTCTTTCCAC
* * *
6837511 GTTTCTAACCTTCAGCT
1 ATCTCGAACCTTCAGCT
6837528 TTAATACCAT
Statistics
Matches: 52, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
24 18 0.35
25 34 0.65
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.40
Consensus pattern (25 bp):
ATCTCGAACCTTCAGCTCTTTCCAC
Found at i:6837498 original size:25 final size:24
Alignment explanation
Indices: 6837437--6837498 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
6837427 TACTTCTCAA
* * *
6837437 ATCTCGTACTTTCAGCTCTTTCAC
1 ATCTCGAACCTTCGGCTCTTTCAC
6837461 ATCTCGAACCTTCGGCTCTTTCCAC
1 ATCTCGAACCTTCGGCTCTTT-CAC
* *
6837486 ATCTTGAATCTTC
1 ATCTCGAACCTTC
6837499 AACTCTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.18, C:0.34, G:0.10, T:0.39
Consensus pattern (24 bp):
ATCTCGAACCTTCGGCTCTTTCAC
Found at i:6838097 original size:52 final size:52
Alignment explanation
Indices: 6838030--6838186 Score: 217
Period size: 52 Copynumber: 3.0 Consensus size: 52
6838020 TATAATCATA
* *
6838030 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTGCAAGT
* * *
6838082 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTACAAGT
1 CAAACTTGCCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTGCAAGT
* * * *
6838134 CAAACTTACCTATTAAGAAT-CCTCTTTCTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTC-TCCTCTTAGAATTCTTCTCTTGCAAGT
6838186 C
1 C
6838187 TTCTTGTCCA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 3 0.03
52 89 0.97
ACGTcount: A:0.25, C:0.26, G:0.09, T:0.39
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:6838227 original size:11 final size:11
Alignment explanation
Indices: 6838211--6838252 Score: 84
Period size: 11 Copynumber: 3.8 Consensus size: 11
6838201 GTAATATCTG
6838211 ACAAATCTCAA
1 ACAAATCTCAA
6838222 ACAAATCTCAA
1 ACAAATCTCAA
6838233 ACAAATCTCAA
1 ACAAATCTCAA
6838244 ACAAATCTC
1 ACAAATCTC
6838253 TTATGGGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:6838562 original size:25 final size:25
Alignment explanation
Indices: 6838534--6838586 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
6838524 AACCTTCGGT
* *
6838534 TCTTTTCACATCTT-GAATCTTCAAC
1 TCTTCTCACAT-TTCGAACCTTCAAC
*
6838559 TCTTCTCACGTTTCGAACCTTCAAC
1 TCTTCTCACATTTCGAACCTTCAAC
6838584 TCT
1 TCT
6838587 GATACCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.21, C:0.32, G:0.06, T:0.42
Consensus pattern (25 bp):
TCTTCTCACATTTCGAACCTTCAAC
Found at i:6839242 original size:52 final size:52
Alignment explanation
Indices: 6839087--6839243 Score: 185
Period size: 52 Copynumber: 3.0 Consensus size: 52
6839077 TATAATCATA
* * *
6839087 CAAACTTGCCCATTAAGAATCC-CTCTCTTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTGCCTATTAAGAATCCTCTTTC-TCTTAGAATTCTTCTCTTGCAAGT
* * *
6839139 CAAACTTGCCTATTAAGAAT-CTATTTCCTTTTAGAATTCTTCTCTTACAAGT
1 CAAACTTGCCTATTAAGAATCCTCTTT-CTCTTAGAATTCTTCTCTTGCAAGT
* * *
6839191 CAAACTTACCTATTAAGAATCCTCTTTCTCTT-GAAATTCTTTTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCTCTTTCTCTTAG-AATTCTTCTCTTGCAAGT
6839243 C
1 C
6839244 TTCTTGTCCA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
51 2 0.02
52 81 0.91
53 6 0.07
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCTCTTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:6839615 original size:25 final size:24
Alignment explanation
Indices: 6839539--6839620 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
6839529 ACCTCGTACT
*
6839539 TTCAGCTCTTTCACGTCTCGAACC
1 TTCAGCTCTTTCACGTTTCGAACC
* * *
6839563 TTCGGCTCTTTCCACATCTT-GAATC
1 TTCAGCTCTTT-CACGT-TTCGAACC
*
6839588 TTCAACTCTTCTCACGTTTCGAACC
1 TTCAGCTCTT-TCACGTTTCGAACC
6839613 TTCAGCTC
1 TTCAGCTC
6839621 CGATACCATT
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
24 12 0.27
25 31 0.69
26 2 0.04
ACGTcount: A:0.17, C:0.35, G:0.11, T:0.37
Consensus pattern (24 bp):
TTCAGCTCTTTCACGTTTCGAACC
Found at i:6840226 original size:52 final size:52
Alignment explanation
Indices: 6840133--6840278 Score: 179
Period size: 52 Copynumber: 2.8 Consensus size: 52
6840123 AAAGTTGCCC
* * * * * *
6840133 ATTAAGAATCCCTCTCCTTTTAAAATTTTTTTCCTGTAAGTCAAACTTACCT
1 ATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGTCAAACTTACCT
*
6840185 ATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTACAAGTCAAACTTACCT
1 ATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGTCAAACTTACCT
* *
6840237 ATTAAGAATCCTCTTT-CTCTT-GAAATTCTTCTTTTGCAAGTC
1 ATTAAGAATCC-CTTTCCTTTTAG-AATTCTTCTCTTGCAAGTC
6840279 TACTTGTCCA
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
51 1 0.01
52 77 0.94
53 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.42
Consensus pattern (52 bp):
ATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGTCAAACTTACCT
Found at i:6840319 original size:11 final size:11
Alignment explanation
Indices: 6840303--6840333 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
6840293 GTAATATCTG
6840303 ACAAATCTCAA
1 ACAAATCTCAA
6840314 ACAAATCTCAA
1 ACAAATCTCAA
6840325 ACAAATCTC
1 ACAAATCTC
6840334 TTATGGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:6844051 original size:27 final size:28
Alignment explanation
Indices: 6843999--6844066 Score: 129
Period size: 27 Copynumber: 2.5 Consensus size: 28
6843989 CACTATTTAT
6843999 AAATCTTTAAAATAAAAAAATTTGTAAC
1 AAATCTTTAAAATAAAAAAATTTGTAAC
6844027 AAATCTTTAAAATAAAAAAA-TTGTAAC
1 AAATCTTTAAAATAAAAAAATTTGTAAC
6844054 AAATCTTTAAAAT
1 AAATCTTTAAAAT
6844067 CACAATAATG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.32
Consensus pattern (28 bp):
AAATCTTTAAAATAAAAAAATTTGTAAC
Found at i:6844245 original size:25 final size:24
Alignment explanation
Indices: 6844217--6844266 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
6844207 TGACTTTTCA
*
6844217 TTTTCAATTCAAGTAAAAATTCAAT
1 TTTTCAA-TCAAGTAAAAATGCAAT
*
6844242 TTTTCAATCAAGTATAAATGCAAT
1 TTTTCAATCAAGTAAAAATGCAAT
6844266 T
1 T
6844267 AAGTTTAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (24 bp):
TTTTCAATCAAGTAAAAATGCAAT
Found at i:6844940 original size:125 final size:122
Alignment explanation
Indices: 6844749--6845148 Score: 305
Period size: 124 Copynumber: 3.2 Consensus size: 122
6844739 TTTTTTAACC
* * * **
6844749 AAAAATACCTTAAATA--ATCCTTTTTATTTCTTAAAGGGCATTATTTCAA-GCA-ACTCTAGAC
1 AAAAATACCTTAAATAGTTTCC-TTATATTTTTTAAAGGGCATTATTT-AAGGCATTTTC-AGA-
* * *
6844810 CAAAAATCACATT-AGTAATGCCTTTTCAAAAAATAAAAGAGATTATTTAAGATATTTTTTGTCT
62 TAAAAAT-AC-TTAAATAATGCCTTTT-AAAAAAT-AATGAGATTATTTAAGATATTTTTTGTCT
* *
6844874 AAAAATACCTTAAATAGTTTCCTTAT-TTGTTTTAAATGGCATTATTTAAGGTATTTTCAGATAA
1 AAAAATACCTTAAATAGTTTCCTTATATT-TTTTAAAGGGCATTATTTAAGGCATTTTCAGATAA
* * * *
6844938 AAATATCTTAAATAATGCCTTTTAAAAAA-ATTGTGGTATTATTTAA-AGCATTTTTAGTCT
65 AAATA-CTTAAATAATGCCTTTTAAAAAATAATG-AG-ATTATTTAAGA-TATTTTTTGTCT
* * * * **
6844998 AAAAATGCCTTAAACAATGTT-CTCATATTTTTTAAAGGGCATTATTTAAGGCATTTTTGGATAA
1 AAAAATACCTTAAATAGT-TTCCTTATATTTTTTAAAGGGCATTATTTAAGGCATTTTCAGATAA
* * * * * * *
6845062 GAAGTGTCTTAAATAATGCCCTTTAAAAAATTGAATGAAATTTTTTAAGGTATTTTTTATCT
65 -AAAT-ACTTAAATAATGCCTTTTAAAAAA-T-AATGAGATTATTTAAGATATTTTTTGTCT
* *
6845124 AAAAAACACCTTAAATAGTCTCCTT
1 -AAAAATACCTTAAATAGTTTCCTT
6845149 TAAAAAAATG
Statistics
Matches: 216, Mismatches: 39, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
122 2 0.01
123 2 0.01
124 78 0.36
125 68 0.31
126 42 0.19
127 21 0.10
128 3 0.01
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (122 bp):
AAAAATACCTTAAATAGTTTCCTTATATTTTTTAAAGGGCATTATTTAAGGCATTTTCAGATAAA
AATACTTAAATAATGCCTTTTAAAAAATAATGAGATTATTTAAGATATTTTTTGTCT
Found at i:6845009 original size:124 final size:125
Alignment explanation
Indices: 6844863--6845091 Score: 311
Period size: 124 Copynumber: 1.8 Consensus size: 125
6844853 TATTTAAGAT
* * * * * *
6844863 ATTTTTTGTCTAAAAATACCTTAAATAGT-TTC-CTTATTTGTTTTAAATGGCATTATTTAAGGT
1 ATTTTTAGTCTAAAAATACCTTAAACAATGTTCTCATA-TT-TTTTAAAGGGCATTATTTAAGGC
*
6844926 ATTTTCAGATAA-AAATATCTTAAATAATGCCTTTTAAAAAAATTGTGGTATTATTTAAAGC
64 ATTTTCAGATAAGAAATATCTTAAATAATGCCCTTTAAAAAAATTGTGGTATTATTTAAAGC
*
6844987 ATTTTTAGTCTAAAAATGCCTTAAACAATGTTCTCATATTTTTTAAAGGGCATTATTTAAGGCAT
1 ATTTTTAGTCTAAAAATACCTTAAACAATGTTCTCATATTTTTTAAAGGGCATTATTTAAGGCAT
** * *
6845052 TTTTGGATAAGAAGTGTCTTAAATAATGCCCTTTAAAAAA
66 TTTCAGATAAGAAATATCTTAAATAATGCCCTTTAAAAAA
6845092 TTGAATGAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
124 56 0.62
125 31 0.34
126 3 0.03
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (125 bp):
ATTTTTAGTCTAAAAATACCTTAAACAATGTTCTCATATTTTTTAAAGGGCATTATTTAAGGCAT
TTTCAGATAAGAAATATCTTAAATAATGCCCTTTAAAAAAATTGTGGTATTATTTAAAGC
Found at i:6845708 original size:63 final size:62
Alignment explanation
Indices: 6845627--6845824 Score: 186
Period size: 63 Copynumber: 3.1 Consensus size: 62
6845617 CCTAAACCTT
*
6845627 AAAATATAAAAAGATTATTTAAAACATTTTCTATACA-AAAGCACTTTAAATAATCTATTTATA
1 AAAATATAAAAA-ATTATTTAAAGCATTTTCTATACAGAAA-CACTTTAAATAATCTATTTATA
* ** * * * *
6845690 AAAATATAAAACAATTATTTAAGGTGTTTTTTTTTTATAGAAACACCTTAAATAATCTATTTATA
1 AAAATATAAAA-AATTATTTAA--AGCATTTTCTATACAGAAACACTTTAAATAATCTATTTATA
* * * * *
6845755 AAAATATAAAAGGATTATTTAAGGCGTTTTCTATACAGAAAC-GTCTTAAATAACCCT-TTTATA
1 AAAATATAAAA-AATTATTTAAAGCATTTTCTATACAGAAACACT-TTAAATAA-TCTATTTATA
6845818 AAAATAT
1 AAAATAT
6845825 TCACCATAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
63 55 0.50
64 3 0.03
65 49 0.45
66 3 0.03
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.38
Consensus pattern (62 bp):
AAAATATAAAAAATTATTTAAAGCATTTTCTATACAGAAACACTTTAAATAATCTATTTATA
Found at i:6845890 original size:212 final size:211
Alignment explanation
Indices: 6845458--6845903 Score: 513
Period size: 212 Copynumber: 2.1 Consensus size: 211
6845448 TTAACCTTAA
* * **
6845458 ACCTTAAATAATCTATTTATAAAAATATAAAAGAATTATTTGAGGTATTTTTTTATACAAAAATG
1 ACCTTAAATAATCTATTTATAAAAATATAAAACAATTATTTAAGGTATTTTTTTATACAAAAACA
* * * *
6845523 CTTTAAATAATCTGTGTAAAAATATAAAAGGATTATTTAAGGCATTTTTTATACAAAAATGCCTT
66 CCTTAAATAATCTGTATAAAAATATAAAAGGATTATTTAAGGCATTTTCTATACAAAAACGCCTT
* ** *
6845588 TATAAAAATATTAATCCTAAACATTAAACCCTAAACCTTAAAATATAAAAAGATTATTTAAAACA
131 AATAAAAATATTAATCAAAAACATTAAACCATAAACCTTAAAATATAAAAAGATTATTTAAAACA
*
6845653 TTTTCTATACAAAAGC
196 TTTTCTATACAAAAAC
* * * * *
6845669 ACTTTAAATAATCTATTTATAAAAATATAAAACAATTATTTAAGGTGTTTTTTTTTTATAGAAAC
1 ACCTTAAATAATCTATTTATAAAAATATAAAACAATTATTTAAGGT-ATTTTTTTATACAAAAAC
* * * *
6845734 ACCTTAAATAATCTATTTATAAAAATATAAAAGGATTATTTAAGGCGTTTTCTATACAGAAACGT
65 ACCTTAAATAATC--TGTATAAAAATATAAAAGGATTATTTAAGGCATTTTCTATACAAAAACGC
*** * * *
6845799 CTTAAATAACCCT-TTTAT-AAAAATATT-CACCATAAA-CTCTAAAATATAAAAAGATTATTTA
128 CTT-AATAAAAATATTAATCAAAAACATTAAACCATAAACCT-TAAAATATAAAAAGATTATTTA
* * * * *
6845860 AGATATTTTTTATATAAAAAT
191 AAACATTTTCTATACAAAAAC
*
6845881 ACCTTAAATAATCCATTTATAAA
1 ACCTTAAATAATCTATTTATAAA
6845904 TACAGAAAAA
Statistics
Matches: 195, Mismatches: 35, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
211 45 0.23
212 89 0.46
213 6 0.03
214 50 0.26
215 5 0.03
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.37
Consensus pattern (211 bp):
ACCTTAAATAATCTATTTATAAAAATATAAAACAATTATTTAAGGTATTTTTTTATACAAAAACA
CCTTAAATAATCTGTATAAAAATATAAAAGGATTATTTAAGGCATTTTCTATACAAAAACGCCTT
AATAAAAATATTAATCAAAAACATTAAACCATAAACCTTAAAATATAAAAAGATTATTTAAAACA
TTTTCTATACAAAAAC
Found at i:6855506 original size:17 final size:17
Alignment explanation
Indices: 6855468--6855506 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
6855458 TGTGTTTTGA
* *
6855468 AATTTTTTATTTTATTT
1 AATTTTTTAATTTATTG
*
6855485 TATTTTTTAATTTATTG
1 AATTTTTTAATTTATTG
6855502 AATTT
1 AATTT
6855507 GAAAATATAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (17 bp):
AATTTTTTAATTTATTG
Found at i:6857292 original size:480 final size:479
Alignment explanation
Indices: 6856392--6857356 Score: 1452
Period size: 480 Copynumber: 2.0 Consensus size: 479
6856382 CTAAGCTTGA
*
6856392 TAACTTTGTTAATTACGACACATAAAAGCTCTCTTTTCATATGGTTATTTCCCCTGCAATTATAT
1 TAACTTTGTTAATTACGACACATAAAAGCTCTCTTTTCATATGGTTATTTCCCCTGCAATTAGAT
* * ** *
6856457 CACAATTTTTAGTAAATCTGACAATTTTAATATAACATGATACTATGATACGAAATTGATTAAAA
66 CACAATTTCTAGTAAATCTGACAATTTTAATATAACATGATACAACAATACGAAATTGATAAAAA
* * * *
6856522 AAAACATCAAAGCATTTTAAATTTTTAACAAAAATTATAAATAGGTTCGATAAAAAAACTTGTTT
131 AAAACACCAAAACATTTTAAAATTTTAACAAAAATTATAAATAAGTTCGATAAAAAAACTTGTTT
** * *
6856587 TGTGTTTAACATATTAAAATAATCTGTGACATAGCAATTTTTGCATTAATTTATATATGTTTGAT
196 TGTGTTTAACATATTAAAATAATCTAAGACATAGCAATTTTTACATTAATTTATATATGTTTGAC
* * * * *
6856652 AGGAAATTAACACAATTAAGATATACAAATTGTCAAGTTTAGTTTTTAGTTATACTTGGATTAGG
261 AGGAAATAAACACAACTAAGATATACAAATTGCCAAGTCTAGTTTCTAGTTATACTTGGATTAGG
6856717 TGTACAAAATTATTGATTTAAACAGGAACAACTCAACTGTTTTTGCTGATATTAACACATATGAA
326 TGTACAAAATTATTGATTTAAACAGGAACAACTCAACTGTTTTTGCTGATATTAACACATATGAA
* *
6856782 TTAAGAAATGAAATTGCTTTTTTGAATTCTTCATGATCACTCAAGAAACTTCCACCAATATCAAG
391 TTAAGAAATGAAATTGCTCTTTTGAATTCTTCATGATCACTCAAGAAACTTCCACCAATATCAAA
6856847 CATTGAAGTTCGTTTCCAAGTAAT
456 CATTGAAGTTCGTTTCCAAGTAAT
*
6856871 TAACTTTGTTAATTACAGACACA-AAAAGCTCTCTTTTCATATGGTTATTTCCCCTGTAATTAGA
1 TAACTTTGTTAATTAC-GACACATAAAAGCTCTCTTTTCATATGGTTATTTCCCCTGCAATTAGA
** * * * * *
6856935 TCACTGTTTCTAGTAGATTTGATAATTTTAATATAACATGATAGAACAATATGAAATTGATAAAA
65 TCACAATTTCTAGTAAATCTGACAATTTTAATATAACATGATACAACAATACGAAATTGAT-AAA
* * *
6857000 AAAAAACACCAAAACATTTTAAAATTTTAACAAAAATTATATATAAGTTTGATAGAAAAA-TGTG
129 AAAAAACACCAAAACATTTTAAAATTTTAACAAAAATTATAAATAAGTTCGATAAAAAAACT-TG
* * * *
6857064 TTTTGTGTTTAACGTATTAACATGAAT-TAAGACATTA-TAATTTTTACATTAATTTGTATATGT
193 TTTTGTGTTTAACATATTAAAAT-AATCTAAGACA-TAGCAATTTTTACATTAATTTATATATGT
*** ** * * *
6857127 TTGACAGGAAATAAACGTTACTAAGATATAGGAATTGCCAAGTCTAGTTTCTGGTTATGCTTGTA
256 TTGACAGGAAATAAACACAACTAAGATATACAAATTGCCAAGTCTAGTTTCTAGTTATACTTGGA
6857192 TTAGGTGTACAAAATTATTGATTTAAACAGGAACAACTCAACTGTTTTTGCTGATATTAACACAT
321 TTAGGTGTACAAAATTATTGATTTAAACAGGAACAACTCAACTGTTTTTGCTGATATTAACACAT
6857257 ATGAATTAAGAAATGAAATTGCTCTTTTGAATTCTTCATGATCACTCAAGAAACTTCCACCAATA
386 ATGAATTAAGAAATGAAATTGCTCTTTTGAATTCTTCATGATCACTCAAGAAACTTCCACCAATA
*
6857322 TCAAACATTGAAGTTCGTTTCTAAGTAAT
451 TCAAACATTGAAGTTCGTTTCCAAGTAAT
6857351 TAACTT
1 TAACTT
6857357 CCCCTTGTTG
Statistics
Matches: 436, Mismatches: 45, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
479 106 0.24
480 325 0.75
481 5 0.01
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (479 bp):
TAACTTTGTTAATTACGACACATAAAAGCTCTCTTTTCATATGGTTATTTCCCCTGCAATTAGAT
CACAATTTCTAGTAAATCTGACAATTTTAATATAACATGATACAACAATACGAAATTGATAAAAA
AAAACACCAAAACATTTTAAAATTTTAACAAAAATTATAAATAAGTTCGATAAAAAAACTTGTTT
TGTGTTTAACATATTAAAATAATCTAAGACATAGCAATTTTTACATTAATTTATATATGTTTGAC
AGGAAATAAACACAACTAAGATATACAAATTGCCAAGTCTAGTTTCTAGTTATACTTGGATTAGG
TGTACAAAATTATTGATTTAAACAGGAACAACTCAACTGTTTTTGCTGATATTAACACATATGAA
TTAAGAAATGAAATTGCTCTTTTGAATTCTTCATGATCACTCAAGAAACTTCCACCAATATCAAA
CATTGAAGTTCGTTTCCAAGTAAT
Found at i:6863103 original size:23 final size:22
Alignment explanation
Indices: 6863034--6863115 Score: 80
Period size: 22 Copynumber: 3.6 Consensus size: 22
6863024 CAAATATTAT
*
6863034 AAAAATCATACT-AAAATCATAC
1 AAAAATCATA-TAAAAATCATGC
*
6863056 AAAGATCATAATAGAAATATCATGC
1 AAAAATCAT-ATA-AAA-ATCATGC
6863081 AATAAATCATATAAAAATCATGC
1 AA-AAATCATATAAAAATCATGC
6863104 AAAAA-CAT-TAAA
1 AAAAATCATATAAA
6863116 TAAATAAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
20 4 0.08
21 3 0.06
22 12 0.23
23 10 0.19
24 6 0.12
25 11 0.21
26 6 0.12
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.23
Consensus pattern (22 bp):
AAAAATCATATAAAAATCATGC
Found at i:6863107 original size:11 final size:11
Alignment explanation
Indices: 6863034--6863108 Score: 60
Period size: 11 Copynumber: 6.5 Consensus size: 11
6863024 CAAATATTAT
6863034 AAAAATCATAC
1 AAAAATCATAC
*
6863045 TAAAATCATAC
1 AAAAATCATAC
* *
6863056 AAAGATCATAAT
1 AAAAATCAT-AC
*
6863068 AGAAATATCATGC
1 A-AAA-ATCATAC
*
6863081 AATAAATCATAT
1 AA-AAATCATAC
*
6863093 AAAAATCATGC
1 AAAAATCATAC
6863104 AAAAA
1 AAAAA
6863109 CATTAAATAA
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
11 29 0.59
12 10 0.20
13 5 0.10
14 5 0.10
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.23
Consensus pattern (11 bp):
AAAAATCATAC
Found at i:6863352 original size:13 final size:13
Alignment explanation
Indices: 6863331--6863371 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
6863321 AATGACAATT
*
6863331 AATAATAAATAAGA
1 AATAATAAA-AAAA
6863345 AA-AATAAAAAAA
1 AATAATAAAAAAA
6863357 AATAATAAAAAAA
1 AATAATAAAAAAA
6863370 AA
1 AA
6863372 AAAAACTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 5 0.20
13 18 0.72
14 2 0.08
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (13 bp):
AATAATAAAAAAA
Found at i:6863384 original size:20 final size:19
Alignment explanation
Indices: 6863337--6863376 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
6863327 AATTAATAAT
*
6863337 AAATAAGAAAAATAAAAAA
1 AAATAATAAAAATAAAAAA
6863356 AAATAATAAAAA-AAAAAA
1 AAATAATAAAAATAAAAAA
6863374 AAA
1 AAA
6863377 CTTAATAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.88, C:0.00, G:0.03, T:0.10
Consensus pattern (19 bp):
AAATAATAAAAATAAAAAA
Found at i:6873167 original size:6 final size:6
Alignment explanation
Indices: 6873156--6873230 Score: 89
Period size: 6 Copynumber: 12.5 Consensus size: 6
6873146 CAAAGAATAA
* *
6873156 TAAAAC TAAAACT AAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
1 TAAAAT TAAAA-T TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
* * *
6873205 TAAACT AAAAAC T-AAAT TAAAAT TAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAA
6873231 GCCAAAAATT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
5 4 0.07
6 50 0.86
7 4 0.07
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (6 bp):
TAAAAT
Found at i:6873237 original size:23 final size:23
Alignment explanation
Indices: 6873171--6873243 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
6873161 CTAAAACTAA
*** *
6873171 AAATTAAAATTAAAATTAAAATT
1 AAATTAAAATTAAACCAAAAACT
*
6873194 AAAATTAAAATTAAACTAAAAACT
1 -AAATTAAAATTAAACCAAAAACT
* *
6873218 AAATTAAAATTAAGCCAAAAATT
1 AAATTAAAATTAAACCAAAAACT
6873241 AAA
1 AAA
6873244 CTAATAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 23 0.53
24 20 0.47
ACGTcount: A:0.66, C:0.05, G:0.01, T:0.27
Consensus pattern (23 bp):
AAATTAAAATTAAACCAAAAACT
Found at i:6881354 original size:3 final size:3
Alignment explanation
Indices: 6881346--6881372 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6881336 TAATGTTATT
6881346 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
6881373 GAGAAGGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6882490 original size:13 final size:13
Alignment explanation
Indices: 6882472--6882496 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6882462 ATATTTTAAG
6882472 TTTTTTATTTTTA
1 TTTTTTATTTTTA
6882485 TTTTTTATTTTT
1 TTTTTTATTTTT
6882497 CTGATTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:6884376 original size:14 final size:14
Alignment explanation
Indices: 6884357--6884390 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6884347 TACCCCTAAT
*
6884357 TTAATTAGTATGAA
1 TTAATTAGTATAAA
*
6884371 TTAATTGGTATAAA
1 TTAATTAGTATAAA
6884385 TTAATT
1 TTAATT
6884391 TTGGATGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (14 bp):
TTAATTAGTATAAA
Found at i:6886852 original size:3 final size:3
Alignment explanation
Indices: 6886844--6886893 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
6886834 AATCAAATCA
6886844 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6886892 AT
1 AT
6886894 ATGGATATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:6896147 original size:25 final size:25
Alignment explanation
Indices: 6896119--6896182 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 25
6896109 CTAAATCGCA
* ****
6896119 TGCTGAATGGTGTTTATGAGTGGTT
1 TGCTGAATGGTGTGTATGAGCACAT
* *
6896144 TGCTAAAGGGTGTGTATGAGCACAT
1 TGCTGAATGGTGTGTATGAGCACAT
6896169 TGCTGAATGGTGTG
1 TGCTGAATGGTGTG
6896183 CTAAATACTA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.20, C:0.08, G:0.36, T:0.36
Consensus pattern (25 bp):
TGCTGAATGGTGTGTATGAGCACAT
Found at i:6907003 original size:25 final size:25
Alignment explanation
Indices: 6906969--6907019 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
6906959 TTTTAATTTT
6906969 TGGAAACTATAATCACTAAAGTCAC
1 TGGAAACTATAATCACTAAAGTCAC
6906994 TGGAAACTATAATCACTAAAGTCAC
1 TGGAAACTATAATCACTAAAGTCAC
6907019 T
1 T
6907020 ACTACAAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (25 bp):
TGGAAACTATAATCACTAAAGTCAC
Found at i:6907040 original size:4 final size:4
Alignment explanation
Indices: 6907031--6907083 Score: 88
Period size: 4 Copynumber: 13.2 Consensus size: 4
6907021 CTACAAACAC
* *
6907031 TTCT TTCT TTCT TTAT TTCT TTCT TTCT TTCT TTAT TTCT TTCT TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
6907079 TTCT T
1 TTCT T
6907084 CCTTCTTCCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (4 bp):
TTCT
Found at i:6907056 original size:20 final size:20
Alignment explanation
Indices: 6907031--6907083 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
6907021 CTACAAACAC
6907031 TTCTTTCTTTCTTTATTTCT
1 TTCTTTCTTTCTTTATTTCT
6907051 TTCTTTCTTTCTTTATTTCT
1 TTCTTTCTTTCTTTATTTCT
6907071 TTCTTTCTTTCTT
1 TTCTTTCTTTCTT
6907084 CCTTCTTCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (20 bp):
TTCTTTCTTTCTTTATTTCT
Found at i:6914190 original size:18 final size:19
Alignment explanation
Indices: 6914169--6914209 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
6914159 ATTACAAACT
6914169 AAATTA-AAATAAAATAAA
1 AAATTATAAATAAAATAAA
* *
6914187 AAA-TATCAATAAATTAAA
1 AAATTATAAATAAAATAAA
6914205 AAATT
1 AAATT
6914210 TTATTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 2 0.11
18 16 0.84
19 1 0.05
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (19 bp):
AAATTATAAATAAAATAAA
Found at i:6916481 original size:18 final size:18
Alignment explanation
Indices: 6916455--6916507 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 18
6916445 AATATAAAAA
*
6916455 TAAATTTTTAAAAAAATT
1 TAAAATTTTAAAAAAATT
*
6916473 TAAAATTTT-TAAAAATT
1 TAAAATTTTAAAAAAATT
*
6916490 TTAAATTTCCTAAAAAAA
1 TAAAATTT--TAAAAAAA
6916508 ATTCTAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 14 0.50
18 8 0.29
19 1 0.04
20 5 0.18
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTTAAAAAAATT
Found at i:6916602 original size:31 final size:32
Alignment explanation
Indices: 6916532--6916604 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
6916522 ACTAAAATTG
*
6916532 TTTTTAAAAAATTTTTAAAATTTTTTTATAAA
1 TTTTTAAAAAAATTTTAAAATTTTTTTATAAA
**
6916564 -TACTAAAAAAATTTT-AAATTTTTCTTA-AAA
1 TTTTTAAAAAAATTTTAAAATTTTT-TTATAAA
6916594 TTTTTAAAAAA
1 TTTTTAAAAAA
6916605 TTCAAAACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
30 11 0.32
31 23 0.68
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (32 bp):
TTTTTAAAAAAATTTTAAAATTTTTTTATAAA
Found at i:6916661 original size:31 final size:32
Alignment explanation
Indices: 6916594--6916665 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
6916584 TTTCTTAAAA
*
6916594 TTTTTAAAAAATTCAAAACAAATCTAAACATT
1 TTTTTAAAAAATTCAAAACAAATCTAAACATG
*
6916626 TTTTTAAAAAA-TCATAAA-ATATTCTAAA-ATG
1 TTTTTAAAAAATTCA-AAACA-AATCTAAACATG
6916657 TTTTTAAAA
1 TTTTTAAAA
6916666 TTTTTAACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 15 0.42
32 21 0.58
ACGTcount: A:0.51, C:0.08, G:0.01, T:0.39
Consensus pattern (32 bp):
TTTTTAAAAAATTCAAAACAAATCTAAACATG
Found at i:6916875 original size:19 final size:19
Alignment explanation
Indices: 6916853--6916909 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
6916843 GATAATTTTC
*
6916853 AAAATTTTAAAAAT-TCTAA
1 AAAATTTTAAAAATAT-AAA
6916872 AAAA-TTTAATAAATATAAA
1 AAAATTTTAA-AAATATAAA
6916891 AAAATTTTAAAAATA-AAA
1 AAAATTTTAAAAATATAAA
6916909 A
1 A
6916910 TTTTTAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
18 9 0.26
19 19 0.56
20 6 0.18
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATTTTAAAAATATAAA
Found at i:6916920 original size:19 final size:19
Alignment explanation
Indices: 6916870--6916923 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
6916860 TAAAAATTCT
*
6916870 AAAAAATTTAATAAATATA
1 AAAAAATTTAATAAAAATA
6916889 AAAAAATTT--TAAAAATA
1 AAAAAATTTAATAAAAATA
**
6916906 AAAATTTTTAATAAAAAT
1 AAAAAATTTAATAAAAAT
6916924 TAGATTTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 14 0.47
19 16 0.53
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAAATTTAATAAAAATA
Found at i:6917010 original size:10 final size:10
Alignment explanation
Indices: 6916997--6917109 Score: 58
Period size: 9 Copynumber: 11.2 Consensus size: 10
6916987 AAATTTTTTT
6916997 AAATTTTAAA
1 AAATTTTAAA
*
6917007 AAA-TATAAA
1 AAATTTTAAA
6917016 AAATTTT--A
1 AAATTTTAAA
*
6917024 AAATTTTATGA
1 AAATTTTA-AA
6917035 AAATTTCTAAA
1 AAATTT-TAAA
*
6917046 AATTATCTTAAAA
1 AA--AT-TTTAAA
*
6917059 AAATACTTTCAA
1 AAAT--TTTAAA
*
6917071 AAA-TCT-AA
1 AAATTTTAAA
*
6917079 AAATTCTAAA
1 AAATTTTAAA
*
6917089 AAA-TTAAAA
1 AAATTTTAAA
6917098 AAATTTTAAA
1 AAATTTTAAA
6917108 AA
1 AA
6917110 TAGAAAATAA
Statistics
Matches: 81, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
8 13 0.16
9 20 0.25
10 17 0.21
11 12 0.15
12 10 0.12
13 7 0.09
14 2 0.02
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (10 bp):
AAATTTTAAA
Found at i:6917248 original size:11 final size:10
Alignment explanation
Indices: 6917218--6917268 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
6917208 AAAAAATATG
*
6917218 AAAAATTTTT
1 AAAATTTTTT
*
6917228 AGAA-TTTTT
1 AAAATTTTTT
6917237 AAAACTTTTTT
1 AAAA-TTTTTT
*
6917248 ACAATTTTTT
1 AAAATTTTTT
*
6917258 AAAAATTTTT
1 AAAATTTTTT
6917268 A
1 A
6917269 TATCTTTTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 8 0.24
10 18 0.53
11 8 0.24
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (10 bp):
AAAATTTTTT
Found at i:6917248 original size:20 final size:21
Alignment explanation
Indices: 6917218--6917267 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
6917208 AAAAAATATG
*
6917218 AAAAA-TTTTTAGAA-TTTTT
1 AAAAATTTTTTACAATTTTTT
*
6917237 AAAACTTTTTTACAATTTTTT
1 AAAAATTTTTTACAATTTTTT
6917258 AAAAATTTTT
1 AAAAATTTTT
6917268 ATATCTTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 4 0.15
20 8 0.31
21 14 0.54
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (21 bp):
AAAAATTTTTTACAATTTTTT
Found at i:6917268 original size:20 final size:19
Alignment explanation
Indices: 6917218--6917268 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
6917208 AAAAAATATG
*
6917218 AAAAATTTTTAGAATTTTT
1 AAAAATTTTTACAATTTTT
*
6917237 AAAACTTTTTTACAATTTTTT
1 AAAA-ATTTTTACAA-TTTTT
6917258 AAAAATTTTTA
1 AAAAATTTTTA
6917269 TATCTTTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.15
20 14 0.52
21 9 0.33
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (19 bp):
AAAAATTTTTACAATTTTT
Found at i:6917276 original size:20 final size:19
Alignment explanation
Indices: 6917218--6917282 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
6917208 AAAAAATATG
6917218 AAAAATTTTTAGAA-TTTTT
1 AAAAATTTTTA-AATTTTTT
*
6917237 AAAACTTTTTTACAATTTTTT
1 AAAA-ATTTTTA-AATTTTTT
* *
6917258 AAAAATTTTTATATCTTTTC
1 AAAAATTTTTAAAT-TTTTT
6917278 AAAAA
1 AAAAA
6917283 AATTATATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
19 6 0.16
20 23 0.61
21 9 0.24
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.51
Consensus pattern (19 bp):
AAAAATTTTTAAATTTTTT
Found at i:6917282 original size:21 final size:21
Alignment explanation
Indices: 6917258--6917297 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6917248 ACAATTTTTT
* *
6917258 AAAAATTTTTATATCTTTTCA
1 AAAAAATTATATATCTTTTCA
*
6917279 AAAAAATTATATATTTTTT
1 AAAAAATTATATATCTTTT
6917298 ATTTTAACTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (21 bp):
AAAAAATTATATATCTTTTCA
Found at i:6917481 original size:19 final size:17
Alignment explanation
Indices: 6917454--6917490 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
6917444 AGTTTCTTTA
6917454 AATTATTTTAGAATTTTT
1 AATTATTTTAG-ATTTTT
6917472 AATTATTTTTAGATTTTT
1 AATTA-TTTTAGATTTTT
6917490 A
1 A
6917491 CAAAATTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
AATTATTTTAGATTTTT
Found at i:6917529 original size:19 final size:19
Alignment explanation
Indices: 6917389--6917660 Score: 117
Period size: 20 Copynumber: 13.8 Consensus size: 19
6917379 ACTTTTGAAT
* * *
6917389 TTTTTTAAATTTTTTTGGA
1 TTTTTAAAATTTTTTAGAA
*
6917408 TTTTCTAAAAATTTTTAG-A
1 TTTT-TAAAATTTTTTAGAA
* *
6917427 TTTATTGAAAA-ATTTTA-AG
1 TTT-TT-AAAATTTTTTAGAA
*
6917446 TTTCTTTAAATTATTTTAGAA
1 TTT-TTAAAATT-TTTTAGAA
*
6917467 TTTTT-AATTATTTTTAG-A
1 TTTTTAAAAT-TTTTTAGAA
* * *
6917485 TTTTTACAAAATTGTTAAAAA
1 TTTTT--AAAATTTTTTAGAA
* *
6917506 ATTTTAAAATTTTTTAGGAT
1 TTTTTAAAATTTTTTA-GAA
* *
6917526 TTTTTCAAGTTTTTTA-AA
1 TTTTTAAAATTTTTTAGAA
** ** *
6917544 TTTTTTTTAATTTTCAAAAAAA
1 -TTTTTAAAATTTT--TTAGAA
* *
6917566 TTTCTAAAATTATTTTTGAA
1 TTTTTAAAATT-TTTTAGAA
*
6917586 TTTTTAAAAAGTTTTTAGAA
1 TTTTT-AAAATTTTTTAGAA
6917606 TTTTT-AAATTTTTTAGAAAA
1 TTTTTAAAATTTTTTAG--AA
* *
6917626 TTTTTAGAATTTTTTAAAA
1 TTTTTAAAATTTTTTAGAA
*
6917645 TTTTTAGAATTTTTTA
1 TTTTTAAAATTTTTTA
6917661 AAAATCTTTT
Statistics
Matches: 190, Mismatches: 41, Indels: 44
0.69 0.15 0.16
Matches are distributed among these distances:
18 20 0.11
19 65 0.34
20 66 0.35
21 35 0.18
22 4 0.02
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTTAAAATTTTTTAGAA
Found at i:6917590 original size:8 final size:9
Alignment explanation
Indices: 6917584--6917663 Score: 70
Period size: 9 Copynumber: 8.2 Consensus size: 9
6917574 ATTATTTTTG
6917584 AATTTTTAAA
1 AATTTTT-AA
*
6917594 AAGTTTTTAG
1 AA-TTTTTAA
6917604 AATTTTTAA
1 AATTTTTAA
*
6917613 ATTTTTTAGAA
1 AATTTTT--AA
6917624 AATTTTTAGA
1 AATTTTTA-A
*
6917634 ATTTTTTAA
1 AATTTTTAA
6917643 AATTTTTAGA
1 AATTTTTA-A
*
6917653 ATTTTTTAA
1 AATTTTTAA
6917662 AA
1 AA
6917664 ATCTTTTAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
9 23 0.40
10 21 0.37
11 13 0.23
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (9 bp):
AATTTTTAA
Found at i:6917618 original size:29 final size:28
Alignment explanation
Indices: 6917577--6917653 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 28
6917567 TTCTAAAATT
*
6917577 ATTTTTGAATTTTTA-AAAAGTTTTTAGA
1 ATTTTTAAATTTTTAGAAAA-TTTTTAGA
6917605 ATTTTTAAATTTTTTAGAAAATTTTTAGA
1 ATTTTTAAA-TTTTTAGAAAATTTTTAGA
6917634 ATTTTTTAAAATTTTTAGAA
1 A-TTTTT-AAATTTTTAGAA
6917654 TTTTTTAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
28 8 0.18
29 15 0.34
30 18 0.41
31 3 0.07
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.55
Consensus pattern (28 bp):
ATTTTTAAATTTTTAGAAAATTTTTAGA
Found at i:6917661 original size:19 final size:19
Alignment explanation
Indices: 6917372--6917679 Score: 117
Period size: 19 Copynumber: 16.3 Consensus size: 19
6917362 ATCTTCATTC
*
6917372 TTTTT-AAACTTTT-GAATT
1 TTTTTAAAATTTTTAGAA-T
* * *
6917390 TTTTTAAATTTTTTTGGAT
1 TTTTTAAAATTTTTAGAAT
*
6917409 TTTCTAAAAATTTTTAG-AT
1 TTT-TTAAAATTTTTAGAAT
* * *
6917428 TTATTGAAAAATTTTA-AGT
1 TT-TTTAAAATTTTTAGAAT
*
6917447 TTCTTTAAATTATTTTAGAA-
1 TT-TTTAAAAT-TTTTAGAAT
*
6917467 TTTTTAATTATTTTTAG-AT
1 TTTTTAA-AATTTTTAGAAT
* * * *
6917486 TTTTACAAAATTGTTAAAAA
1 TTTT-TAAAATTTTTAGAAT
* *
6917506 ATTTTAAAATTTTTTAGGAT
1 TTTTTAAAA-TTTTTAGAAT
**
6917526 TTTTTCAAGTTTTTTA-AAT
1 TTTTT-AAAATTTTTAGAAT
** *
6917545 TTTTTTTAATTTTCA-AA-
1 TTTTTAAAATTTTTAGAAT
* *
6917562 -----AAAATTTCTAAAAT
1 TTTTTAAAATTTTTAGAAT
** * *
6917576 TATTTTTGAATTTTTAAAAAG
1 T-TTTTAAAATTTTT-AGAAT
*
6917597 TTTTTAGAATTTTTA-AAT
1 TTTTTAAAATTTTTAGAAT
6917615 TTTTTAGAAAATTTTTAGAAT
1 TTTTT--AAAATTTTTAGAAT
6917636 TTTTTAAAATTTTTAGAAT
1 TTTTTAAAATTTTTAGAAT
6917655 TTTTTAAAAATCTTTTAG-AT
1 TTTTT-AAAAT-TTTTAGAAT
6917675 TTTTT
1 TTTTT
6917680 TTTTGAAATT
Statistics
Matches: 216, Mismatches: 47, Indels: 52
0.69 0.15 0.17
Matches are distributed among these distances:
12 6 0.03
13 2 0.01
18 20 0.09
19 84 0.39
20 82 0.38
21 22 0.10
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTTAAAATTTTTAGAAT
Found at i:6917680 original size:21 final size:20
Alignment explanation
Indices: 6917604--6917679 Score: 113
Period size: 20 Copynumber: 3.9 Consensus size: 20
6917594 AAGTTTTTAG
6917604 AATTTTTA-AATTTTTTAGAA
1 AATTTTTAGAATTTTTTA-AA
6917624 AATTTTTAGAATTTTTT-AA
1 AATTTTTAGAATTTTTTAAA
6917643 AATTTTTAGAATTTTTTAAA
1 AATTTTTAGAATTTTTTAAA
6917663 AATCTTTTAG-ATTTTTT
1 AAT-TTTTAGAATTTTTT
6917680 TTTTGAAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
19 19 0.36
20 20 0.38
21 14 0.26
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.58
Consensus pattern (20 bp):
AATTTTTAGAATTTTTTAAA
Found at i:6918295 original size:31 final size:31
Alignment explanation
Indices: 6918252--6918318 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
6918242 AATTAAATTA
6918252 ATATA-TTTTTATTCAAAAATATATATTAAT
1 ATATATTTTTTATTCAAAAATATATATTAAT
*
6918282 ATATATTTTTTATTGAAAAATATATATTAAT
1 ATATATTTTTTATTCAAAAATATATATTAAT
6918313 ATATAT
1 ATATAT
6918319 CTATAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 5 0.14
31 30 0.86
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (31 bp):
ATATATTTTTTATTCAAAAATATATATTAAT
Found at i:6921437 original size:11 final size:11
Alignment explanation
Indices: 6921421--6921445 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6921411 TTGCATTGGA
6921421 AAACACTTCTT
1 AAACACTTCTT
6921432 AAACACTTCTT
1 AAACACTTCTT
6921443 AAA
1 AAA
6921446 AGGCACCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACACTTCTT
Found at i:6923652 original size:14 final size:14
Alignment explanation
Indices: 6923633--6923660 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6923623 TTTGGAATTT
6923633 AAGTTAGATTTTTG
1 AAGTTAGATTTTTG
6923647 AAGTTAGATTTTTG
1 AAGTTAGATTTTTG
6923661 GGATTGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (14 bp):
AAGTTAGATTTTTG
Found at i:6923798 original size:14 final size:15
Alignment explanation
Indices: 6923766--6923798 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6923756 GTTTTGTTTG
*
6923766 AATTTTTGGGAATTT
1 AATTTTTGGGAATTA
6923781 AATTTTTGGGAA-TA
1 AATTTTTGGGAATTA
6923795 AATT
1 AATT
6923799 GAATTTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (15 bp):
AATTTTTGGGAATTA
Found at i:6924260 original size:24 final size:24
Alignment explanation
Indices: 6924210--6924260 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
6924200 AATTGCATGT
*
6924210 TTATTTGCATTATTTATATTATTA
1 TTATTTGCATTATTTATATTATAA
6924234 TTATTTGC-TTGATTATATATT-TAA
1 TTATTTGCATT-ATT-TATATTATAA
6924258 TTA
1 TTA
6924261 CATGTTTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 2 0.08
24 16 0.67
25 6 0.25
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (24 bp):
TTATTTGCATTATTTATATTATAA
Found at i:6924303 original size:20 final size:20
Alignment explanation
Indices: 6924243--6924305 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
6924233 ATTATTTGCT
6924243 TGATTATATATTTAATTACA
1 TGATTATATATTTAATTACA
* * *
6924263 TG-TTTTACATTGTTAAGTACA
1 TGATTATATA-T-TTAATTACA
6924284 TGATTATATATTTAATTACA
1 TGATTATATATTTAATTACA
6924304 TG
1 TG
6924306 TCTATTTGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 5 0.15
20 13 0.38
21 11 0.32
22 5 0.15
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.49
Consensus pattern (20 bp):
TGATTATATATTTAATTACA
Found at i:6924344 original size:56 final size:57
Alignment explanation
Indices: 6924284--6924395 Score: 124
Period size: 56 Copynumber: 2.0 Consensus size: 57
6924274 GTTAAGTACA
6924284 TGATTATAT-A-T-TTAATTACATGTCTATTTGCATGATTATTAATTTATTAAT-TTATG
1 TGATTATATGATTATTAA-TACAT-T-TATTTGCATGATTATTAATTTATTAATATTATG
* * * * *
6924340 TGATTGTATGATTATTAATATATTTATTTGCATGGTTGTTTATTTATTAATATTAT
1 TGATTATATGATTATTAATACATTTATTTGCATGATTATTAATTTATTAATATTAT
6924396 TACATGATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
56 32 0.68
57 6 0.13
58 5 0.11
59 4 0.09
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.55
Consensus pattern (57 bp):
TGATTATATGATTATTAATACATTTATTTGCATGATTATTAATTTATTAATATTATG
Found at i:6924454 original size:24 final size:25
Alignment explanation
Indices: 6924405--6924460 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
6924395 TTACATGATT
**
6924405 TTATA-TTTATTGCATGATATGTTA
1 TTATATTTTATTGCATGATATAATA
6924429 TTATATTTTATTGCATGAT-TAATA
1 TTATATTTTATTGCATGATATAATA
*
6924453 TTTTATTT
1 TTATATTT
6924461 GAATGATATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.29, C:0.04, G:0.09, T:0.59
Consensus pattern (25 bp):
TTATATTTTATTGCATGATATAATA
Found at i:6924458 original size:44 final size:44
Alignment explanation
Indices: 6924383--6924469 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
6924373 GGTTGTTTAT
* *
6924383 TTATTAATATTATTACATGATTTTATATTTA-TTGCATGATATG
1 TTATTAATATTATTACATGATTATATATTTATTTGAATGATATG
* *
6924426 TTATTATATTTTATTGCATGATTA-ATATTTTATTTGAATGATAT
1 TTATTA-ATATTATTACATGATTATATA-TTTATTTGAATGATAT
6924470 CAAATTACAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 9 0.24
44 18 0.49
45 10 0.27
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.55
Consensus pattern (44 bp):
TTATTAATATTATTACATGATTATATATTTATTTGAATGATATG
Found at i:6924595 original size:20 final size:20
Alignment explanation
Indices: 6924570--6924698 Score: 105
Period size: 20 Copynumber: 6.8 Consensus size: 20
6924560 TTATTGCATG
6924570 ATTATATTTGCATGAATGA-T
1 ATTATATTTGCATG-ATGATT
*
6924590 ATTATATATT-TAT-ATGATT
1 ATTATAT-TTGCATGATGATT
* *
6924609 ATTATATTTGTATGATAATT
1 ATTATATTTGCATGATGATT
*
6924629 AATATATTTGCATGAT-ATT
1 ATTATATTTGCATGATGATT
6924648 A-TATATTT--AT-ATGATT
1 ATTATATTTGCATGATGATT
*
6924664 ATTAT-TATTGCATGATTATT
1 ATTATAT-TTGCATGATGATT
* *
6924684 AATACATTTGCATGA
1 ATTATATTTGCATGA
6924699 CATTCTTGTA
Statistics
Matches: 91, Mismatches: 7, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
15 2 0.02
16 7 0.08
17 5 0.05
18 13 0.14
19 17 0.19
20 44 0.48
21 3 0.03
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.50
Consensus pattern (20 bp):
ATTATATTTGCATGATGATT
Found at i:6924645 original size:55 final size:55
Alignment explanation
Indices: 6924585--6924698 Score: 185
Period size: 55 Copynumber: 2.1 Consensus size: 55
6924575 ATTTGCATGA
* *
6924585 ATGATATTATATATTTATATGATTATTA-TATTTGTATGATAATTAATATATTTGC
1 ATGATATTATATATTTATATGATTATTATTA-TTGCATGATAATTAATACATTTGC
*
6924640 ATGATATTATATATTTATATGATTATTATTATTGCATGATTATTAATACATTTGC
1 ATGATATTATATATTTATATGATTATTATTATTGCATGATAATTAATACATTTGC
6924695 ATGA
1 ATGA
6924699 CATTCTTGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
55 53 0.96
56 2 0.04
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.51
Consensus pattern (55 bp):
ATGATATTATATATTTATATGATTATTATTATTGCATGATAATTAATACATTTGC
Found at i:6924662 original size:38 final size:37
Alignment explanation
Indices: 6924606--6924684 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 37
6924596 TATTTATATG
*
6924606 ATTATTATATTTGTATGATAATTAATATATTTGCATGA-T
1 ATTATTATATTTATATGATAATT-AT-TA-TTGCATGATT
*
6924645 ATTA-TATATTTATATGATTATTATTATTGCATGATT
1 ATTATTATATTTATATGATAATTATTATTGCATGATT
6924681 ATTA
1 ATTA
6924685 ATACATTTGC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
35 8 0.22
36 7 0.19
37 2 0.05
38 16 0.43
39 4 0.11
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (37 bp):
ATTATTATATTTATATGATAATTATTATTGCATGATT
Found at i:6931426 original size:20 final size:20
Alignment explanation
Indices: 6931403--6931440 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6931393 ATGTGTAAGG
6931403 AAAAAAAAAGAAAA-AAAGTT
1 AAAAAAAAA-AAAAGAAAGTT
6931423 AAAAAAAAAAAAAGAAAG
1 AAAAAAAAAAAAAGAAAG
6931441 ACTCAAGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (20 bp):
AAAAAAAAAAAAAGAAAGTT
Found at i:6932664 original size:43 final size:43
Alignment explanation
Indices: 6932596--6932789 Score: 211
Period size: 43 Copynumber: 4.6 Consensus size: 43
6932586 AGAATAAACT
*
6932596 CATTTTATTTTTT-AAAG-TTCTAAAGCCTCAGTTGT-GGAAGAG
1 CATTTTATTTTTTCAAAGTTTC-AAAGCCTCAGTTGTAGG-GGAG
* * *
6932638 CATTTTATTTTTTCAAAGTTTCAAAGCCTTAGTTGTGGGGGAA
1 CATTTTATTTTTTCAAAGTTTCAAAGCCTCAGTTGTAGGGGAG
* * * *
6932681 CATTTTA-TTTTTCAAAAGTTTTAAAACTTTAGTTGTCA-GGGAG
1 CATTTTATTTTTTC-AAAGTTTCAAAGCCTCAGTTGT-AGGGGAG
* *
6932724 TATTTTA-TTTTTCAAAGTTTCAAAGCCTCAATTGTAGGGGAG
1 CATTTTATTTTTTCAAAGTTTCAAAGCCTCAGTTGTAGGGGAG
*
6932766 CATTTTATTTTTTCAAAGTCTCAA
1 CATTTTATTTTTTCAAAGTTTCAA
6932790 TTGTGAGTGA
Statistics
Matches: 129, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 47 0.36
43 76 0.59
44 5 0.04
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (43 bp):
CATTTTATTTTTTCAAAGTTTCAAAGCCTCAGTTGTAGGGGAG
Found at i:6932692 original size:85 final size:83
Alignment explanation
Indices: 6932596--6932784 Score: 227
Period size: 85 Copynumber: 2.2 Consensus size: 83
6932586 AGAATAAACT
*
6932596 CATTTTATTTTTTAAAGTTCTAAAGCCTCAGTTGT-GGAAGAGCATTTTATTTTTTCAAAGTTTC
1 CATTTTATTTTTTAAAGTTCTAAAACCTCAGTTGTAGG--GAGCATTTTA-TTTTTCAAAGTTTC
* * *
6932660 AAAGCCTTAGTTGTGGGGGAA
63 AAAGCCTCAATTGTAGGGGAA
* * * * *
6932681 CATTTTATTTTTCAAAAGTTTTAAAACTTTAGTTGTCAGGGAGTATTTTATTTTTCAAAGTTTCA
1 CATTTTATTTTT-TAAAGTTCTAAAACCTCAGTTGT-AGGGAGCATTTTATTTTTCAAAGTTTCA
*
6932746 AAGCCTCAATTGTAGGGGAG
64 AAGCCTCAATTGTAGGGGAA
6932766 CATTTTATTTTTTCAAAGT
1 CATTTTATTTTTT-AAAGT
6932785 CTCAATTGTG
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
85 60 0.67
86 27 0.30
88 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.43
Consensus pattern (83 bp):
CATTTTATTTTTTAAAGTTCTAAAACCTCAGTTGTAGGGAGCATTTTATTTTTCAAAGTTTCAAA
GCCTCAATTGTAGGGGAA
Found at i:6934253 original size:18 final size:18
Alignment explanation
Indices: 6934226--6934272 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
6934216 GCAACATTTT
*
6934226 TTTCTTTTTTCATTTTAA
1 TTTCTATTTTCATTTTAA
* *
6934244 TTTCTATTTTTATTTTGA
1 TTTCTATTTTCATTTTAA
6934262 TTTCTATTTTC
1 TTTCTATTTTC
6934273 CAATTTTCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.15, C:0.11, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTCTATTTTCATTTTAA
Found at i:6934629 original size:20 final size:19
Alignment explanation
Indices: 6934606--6934668 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
6934596 ATATTATTAT
6934606 TTGCATTATTATATATTTAA
1 TTGCA-TATTATATATTTAA
* *
6934626 TTGCATATTTTACATTGTTAA
1 TTGCATATTATATA-T-TTAA
*
6934647 TTGCACGATTATATATTTAA
1 TTGCA-TATTATATATTTAA
6934667 TT
1 TT
6934669 ACATGTCTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 7 0.20
20 12 0.34
21 10 0.29
22 6 0.17
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (19 bp):
TTGCATATTATATATTTAA
Found at i:6934733 original size:36 final size:36
Alignment explanation
Indices: 6934657--6934772 Score: 105
Period size: 36 Copynumber: 3.3 Consensus size: 36
6934647 TTGCACGATT
* * * * *
6934657 ATATATTTAATTACATGTCTACTTATATGATTATTA
1 ATATATTTATTTATATGTCTATTTGTATAATTATTA
* * *
6934693 ATTTATTTA-TT-TGTGT-GA-TTGTATAATTATTA
1 ATATATTTATTTATATGTCTATTTGTATAATTATTA
* * *
6934725 ATATATTTAGTTGTATGTCTATTTGTATGATTATTA
1 ATATATTTATTTATATGTCTATTTGTATAATTATTA
6934761 ATATATTTATTT
1 ATATATTTATTT
6934773 GCATGGTTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
32 20 0.31
33 3 0.05
34 7 0.11
35 3 0.05
36 32 0.49
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (36 bp):
ATATATTTATTTATATGTCTATTTGTATAATTATTA
Found at i:6934784 original size:36 final size:34
Alignment explanation
Indices: 6934682--6934784 Score: 120
Period size: 36 Copynumber: 3.0 Consensus size: 34
6934672 TGTCTACTTA
* *
6934682 TATGATTATTAATTTATTTATTTG-TGTGA-TTG
1 TATGATTATTAATATATTTATTTGATGTTATTTG
* *
6934714 TATAATTATTAATATATTTAGTTGTATGTCTATTTG
1 TATGATTATTAATATATTTATTTG-ATGT-TATTTG
6934750 TATGATTATTAATATATTTATTTGCATGGTTATTT
1 TATGATTATTAATATATTTATTTG-AT-GTTATTT
6934785 ATTATTAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
32 21 0.36
34 3 0.05
35 1 0.02
36 32 0.54
37 2 0.03
ACGTcount: A:0.28, C:0.02, G:0.13, T:0.57
Consensus pattern (34 bp):
TATGATTATTAATATATTTATTTGATGTTATTTG
Done.