Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 320 of 402
Found at i:29817812 original size:159 final size:159
Alignment explanation
Indices: 29817422--29817861 Score: 439
Period size: 159 Copynumber: 2.8 Consensus size: 159
29817412 AACTCCGTAT
* * * *
29817422 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTGAA
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* ** * ** *
29817487 CCGGTTGGATAGGCATAATTCATAAGCCGAGGATCAGCCCGGTACCCCCT-TGCGTGCTATCGAT
66 CCTGCCGGATAGGCATAATGCGCAAGCCGAGGATCAGCCCGGT-CCCCCTCTGCGTGCTACCGAT
*
29817551 CCTACTGCAGCAACCCTCGGTTCGGTCTGA
130 CCCACTGCAGCAACCCTCGGTTCGGTCTGA
* * * * * * * * *
29817581 TCTTTA-A-TTGGGAATGAACT-CTGTATGCCAAAGTCAACCCACGAAATGAGCATACCGGCACT
1 GC-TTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
*
29817643 GAG-CTGGCCGGATAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGTTACC
63 GAGCCT-GCCGGATAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACC
** *
29817707 GATCCCGTTGCCA-CAACCCTCGG-TCTGGT-TGGG
127 GATCCCACTG-CAGCAACCCTCGGTTC-GGTCT-GA
* * *
29817740 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * *
29817805 CCTGCCGGAAAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGT-CCCCTCTGCGTGCT
66 CCTGCCGGATAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCT
29817862 GTCAATCTTG
Statistics
Matches: 225, Mismatches: 44, Indels: 25
0.77 0.15 0.09
Matches are distributed among these distances:
158 28 0.12
159 187 0.83
160 10 0.04
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCTGCCGGATAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATC
CCACTGCAGCAACCCTCGGTTCGGTCTGA
Found at i:29819001 original size:159 final size:156
Alignment explanation
Indices: 29818647--29819148 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 156
29818637 ACTCCGTATG
*
29818647 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGAGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGT
* * * * *
29818712 CAGTCGAAGAGGTAGAATGCGCAAGCTGGGGATCTGCCTGGTCCCCCCTGTGTGCTGTCGATCCT
66 CGGTCGAAGAGGCAGAATGAGCAAG-TCGGGATC-GCCTGGTCCCCCCTGCGTGCTGTCGATCCT
* * * *
29818777 GCTGCCGTAACCCTTGGTCCGGTCTAAT
129 GCTGCCGCAACCCTCGGTCCGATCTAAC
* * * * * * * *
29818805 CTGAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTACGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAG
* * * *
29818869 TCGGTTGAAAAGGCATAATGTGCAAGTCAGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGATC
65 TCGGTCGAAGAGGCAGAATGAGCAAGTC-GGGATCG-CCTGGTCCCCC-CTGCGTGCTGTCGATC
* * * **
29818934 CCGCTGCCACAACCCTCGGTCTGAT-TGGGC
127 CTGCTGCCGCAACCCTCGGTCCGATCT-AAC
* * * **
29818964 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGT
* ** * *
29819029 CGGTCGGAGAGGCAGAATGAGCAAGTCGAGGATCGTCCTGGTCCTTCCTGCGTCCTGTCGATCTT
66 CGGTCGAAGAGGCAGAATGAGCAAGTCG-GGATCG-CCTGGTCCCCCCTGCGTGCTGTCGATCCT
* ** *
29819094 GCTACCGCAACCCTCGGTCCGATCCGAT
129 GCTGCCGCAACCCTCGGTCCGATCTAAC
*
29819122 CTTAGAC-TAGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29819149 TTAGACTGAG
Statistics
Matches: 278, Mismatches: 57, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.01
158 151 0.54
159 122 0.44
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGT
CGGTCGAAGAGGCAGAATGAGCAAGTCGGGATCGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCGGTCCGATCTAAC
Found at i:29819163 original size:26 final size:26
Alignment explanation
Indices: 29819122--29819174 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29819112 CCGATCCGAT
*
29819122 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29819148 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
29819174 C
1 C
29819175 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29820091 original size:26 final size:26
Alignment explanation
Indices: 29820039--29820091 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29820029 GGCTCAAAAT
*
29820039 CTTAGACTGGGAATGAACCCCGGATG
1 CTTAGACTGGGAATGAACCCCAGATG
* *
29820065 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACCCCAGATG
29820091 C
1 C
29820092 CGAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCAGATG
Found at i:29820439 original size:159 final size:157
Alignment explanation
Indices: 29820064--29820565 Score: 441
Period size: 159 Copynumber: 3.2 Consensus size: 157
29820054 AACCCCGGAT
*
29820064 GCTTAGACATGGAATGAACTCCATATGCCGAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * **
29820129 TCGGTCGGAGAGGCAGGATGCGCAAGCTGGGGATCGACCGGTCCCCCCTTGTGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGATCCCCCCTTGCGTGCTACCGATCC
* *
29820194 TGCTATCGTAACCCTCGGTCTGGTCTGA
131 TGCCATCG-AACCCTCGGTCCGGTCTGA
* * * * * * * * *
29820222 TCTTAGAC-TGGGAATGAATTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * *
29820286 GCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGAT-CCCCCTCTGCGTGCTACCGG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCGATCCCCCCT-TGCGTGCTACCGA
*
29820350 TCTCATTGCCA-C-AACCCTCGGTCCGG-CTGGG
128 TC-C--TGCCATCGAACCCTCGGTCCGGTCT-GA
* * * *
29820381 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
29820446 CCGGCCGGAGAGGCAGAATGCGTAAG-TGGGGATCAGCCCGGTCCCCCC--GACGTGCTGCCAAT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCGATCCCCCCTTG-CGTGCTACCGAT
* *
29820508 CCTACTGCCA-C-AACCCTCGATCCGGTCCGA
129 -C--CTGCCATCGAACCCTCGGTCCGGTCTGA
*
29820538 TCTTAGAC-TGAGAATGAACTCCATATGC
1 GCTTAGACATG-GAATGAACTCCATATGC
29820566 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 55, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 52 0.19
158 103 0.37
159 110 0.40
160 2 0.01
161 1 0.00
162 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGATCCCCCCTTGCGTGCTACCGATCC
TGCCATCGAACCCTCGGTCCGGTCTGA
Found at i:29820578 original size:26 final size:26
Alignment explanation
Indices: 29820539--29820591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29820529 CCGGTCCGAT
29820539 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
29820565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
29820591 C
1 C
29820592 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:29820930 original size:26 final size:26
Alignment explanation
Indices: 29820901--29820972 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
29820891 AATCTTATAT
*
29820901 TGGGAATGAACTCTGTATGCTTAGAC
1 TGGGAATGAACTCCGTATGCTTAGAC
29820927 TGGGAATGAACTCCGTATGCTTAGAC
1 TGGGAATGAACTCCGTATGCTTAGAC
**
29820953 TGGGGTTGAACTCCGTATGC
1 TGGGAATGAACTCCGTATGC
29820973 CTAAGTCAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
TGGGAATGAACTCCGTATGCTTAGAC
Found at i:29821637 original size:26 final size:26
Alignment explanation
Indices: 29821599--29821651 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29821589 GGCTCAAACT
*
29821599 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29821625 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29821651 C
1 C
29821652 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29821970 original size:26 final size:26
Alignment explanation
Indices: 29821941--29821993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29821931 CTGGTCCGAT
*
29821941 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACGTGGG-ATGAACTCCGTATG
29821967 CTTAGACGTGGGATGAACTCCGTATG
1 CTTAGACGTGGGATGAACTCCGTATG
29821993 C
1 C
29821994 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACGTGGGATGAACTCCGTATG
Found at i:29822189 original size:26 final size:26
Alignment explanation
Indices: 29822150--29822202 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29822140 CTGGTCTGAT
29822150 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
29822176 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
29822202 C
1 C
29822203 CAAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:29822701 original size:25 final size:26
Alignment explanation
Indices: 29822651--29822702 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
29822641 CTGATCTGAT
* *
29822651 CTTAGACTGGGAAGGAATTCCGTATG
1 CTTAGACTAGGAAGGAACTCCGTATG
*
29822677 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAAGGAACTCCGTATG
29822702 C
1 C
29822703 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAAGGAACTCCGTATG
Found at i:29823424 original size:26 final size:26
Alignment explanation
Indices: 29823386--29823437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29823376 GCTCAAACTT
29823386 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
29823412 TTAGACATG-GAATGAACTCCGTATGC
1 TTAGAC-TGAGAATGAACTCCGTATGC
29823438 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:29823763 original size:26 final size:26
Alignment explanation
Indices: 29823727--29823779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29823717 CTGGTCTGAT
*
29823727 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
29823753 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
29823779 C
1 C
29823780 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:29824586 original size:26 final size:26
Alignment explanation
Indices: 29824550--29824602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29824540 CCGGTTTGAT
29824550 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29824576 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29824602 C
1 C
29824603 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29825281 original size:26 final size:26
Alignment explanation
Indices: 29825245--29825297 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29825235 TCGGTCCAAT
29825245 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
29825271 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29825297 C
1 C
29825298 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29826189 original size:158 final size:157
Alignment explanation
Indices: 29825644--29826241 Score: 549
Period size: 159 Copynumber: 3.8 Consensus size: 157
29825634 ACTCTGTATG
* * *
29825644 CTTAGACAT-GGAATGAACTCCGTCTGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* * * * * * *
29825708 CCCGGTCAGAGAGGCAAAATGCACAAGCTGGGGA-CTGTCTCGATCCCCCCTGCGTGCTATCGAT
65 -CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATC-GGCCCGATCCCCCCTGCGTGCTGTCGAT
* ** **
29825772 CCTACTGTCGTAACCCTCGGTCCGTTCCGAT
128 CCTGCTACCACAACCCTCGGTCCG-TCCGAT
* * * * * * * *
29825803 CTTAGATTGGGAATGAACTCCGTATGCTTATGTCAACCCATGAAACGAACGTGCGAGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
* * * * * *
29825868 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATTGGCTC-AGTCCCCCTCTGCGTGCTGTCGGTC
66 CGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGA-TCCCCC-CTGCGTGCTGTCGATC
* * * * **
29825932 CCGCAACCACAACCCTCGGTCCGGCTGGGG
129 CTGCTACCACAACCCTCGGTCCGTC-CGAT
* * * * *
29825962 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATGCGGGCA-CTCC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-AGCTCA
* * *
29826025 TCCGATCGGAGAGACAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
64 GCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
29826090 CTGCTACCACAACCCTCGGTCCGATCCGAT
129 CTGCTACCACAACCCTCGGTCCG-TCCGAT
* * ** * ** *
29826120 CTTATACTGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAATGAGCGTATGGGAGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
**** * *
29826185 CGATCGGAGAGGCAGAATATGTAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCT
66 CGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGAT-CCCCCCTGCGTGCT
29826242 ACCGATCTTG
Statistics
Matches: 350, Mismatches: 77, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 161 0.46
159 185 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
CGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGGTCCGTCCGAT
Found at i:29826239 original size:317 final size:317
Alignment explanation
Indices: 29825643--29826241 Score: 727
Period size: 317 Copynumber: 1.9 Consensus size: 317
29825633 AACTCTGTAT
* * * * * *
29825643 GCTTAGACATGGAATGAACTCCGTCTGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCA-
* * * * *
29825708 CCCGGTCAGAGAGGCAAAATGCACAAGCTGGGGACTGTCTCGATCCCCCCTGCGTGCTATCGATC
65 CCCGATCAGAGAGACAAAATGCACAAGCCGGGGACTGGCCCGATCCCCCCTGCGTGCTATCGATC
** ** * * * *
29825773 CTACTGTCGTAACCCTCGGTCCGTTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTATGTCA
130 CTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
29825838 ACCCATGAAACGAACGTGCGAGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATTG
195 ACCCATGAAACGAACGTACGAGAGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCG
* * *
29825903 GCTCAGTCCCCCTCTGCGTGCTGTCGGTCCCGCAACCACAACCCTCGGTCCGGCTGGG
260 ACCCAGTCCCCCCCTGCGTGCTGTCGGTCCCGCAACCACAACCCTCGGTCCGGCTGGG
*
29825961 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATGCGGGCACTC-C
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCAC
* * * *
29826025 TCCGATCGGAGAGACAGAATGCACAAGCCGGGGA-TCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
66 -CCGATCAGAGAGACAAAATGCACAAGCCGGGGACT-GGCCCGATCCCCCCTGCGTGCTATCGAT
* * * *
29826089 CCTGCTACCACAACCCTCGGTCCGATCCGATCTTATACTGGGAATGAACTCTGTATGCCTAAGTT
129 CCTACTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
29826154 AACCCATGAAATGAGCGTATGGGAGCTCAGTCGATCGGAGAGGCAGAATATGTAAGCCAGGGATC
194 AACCCATGAAACGAACGTACGAGAGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCAGGGATC
29826219 GACCC-GATCCCCCCCTGCGTGCT
259 GACCCAG-TCCCCCCCTGCGTGCT
29826242 ACCGATCTTG
Statistics
Matches: 232, Mismatches: 46, Indels: 7
0.81 0.16 0.02
Matches are distributed among these distances:
316 3 0.01
317 173 0.75
318 56 0.24
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCACTCAC
CCGATCAGAGAGACAAAATGCACAAGCCGGGGACTGGCCCGATCCCCCCTGCGTGCTATCGATCC
TACTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAACGTACGAGAGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCGA
CCCAGTCCCCCCCTGCGTGCTGTCGGTCCCGCAACCACAACCCTCGGTCCGGCTGGG
Found at i:29826706 original size:26 final size:26
Alignment explanation
Indices: 29826668--29826720 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29826658 CCGATCCGAT
29826668 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
29826694 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
29826720 C
1 C
29826721 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:29827306 original size:317 final size:316
Alignment explanation
Indices: 29826693--29827510 Score: 857
Period size: 317 Copynumber: 2.6 Consensus size: 316
29826683 AACTCAGTAT
* * *
29826693 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * *
29826758 CCGGTCAGAGAGGTAGAATGCGTAAGCCGGGGACCGACCTGGGCCCCCTGCGTGCTGTCGATCCT
66 CCGGCCAGAGAGGCAGAATGCGTAAGCCGGAGACCGACCTGGGCCCCCTACGTGCTGTCGATCCT
* * * * * *
29826823 ACTACCGCAACCATCAGTCCAGTCAGATCTTAGACTAGGAATGAACTCCGTGTGCCTAAGTCAGC
131 ACTACCGCAACCATCAGTCCAGCCAGATCTTAAACTAGGAATCAACTCCGTATGCATAAGTCAAC
* * * **
29826888 CCACGAAACGAGCGTACAGGCACTGAGCAGACCAGATAGGCATAATGTGCAACTCAGGGATCAGC
196 CCACGAAACGAACGTACAGGCACTAAGCAGACCAGAGAGGCATAATGCACAACTCAGGGATCAGC
*
29826953 CCGATCCCCCTCTACGTGCTACTGATCCCGCTGCCACAACCCTCGATCCGGCTGGG
261 CCGATCCCCCTCTACGTGCTACTGATCCCACTGCCACAACCCTCGATCCGGCTGGG
*
29827009 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * * *
29827074 CCGGCC-GAAGGGGCAGAATGCGTAAGCTGGAGATC-ATCTCGGTCCCTCCTACGTGCTGTCGAT
66 CCGGCCAG-AGAGGCAGAATGCGTAAGCCGGAGACCGACCT-GGGCCC-CCTACGTGCTGTCGAT
* ** * * * * *
29827137 CCTGCTGTCGTAAGCC-TCGGT-CTGACCTGATCTTAAACTGGGAATCAACTCCGTATGCATAAG
128 CCTACTACCGCAA-CCATCAGTCCAG-CCAGATCTTAAACTAGGAATCAACTCCGTATGCATAAG
* * * * * * * *
29827200 TCAACCCACGAAATGAATGTTCGGGCACTAAGCCGATCGGAGAGGCATAATGCACAAGCTGA-GG
191 TCAACCCACGAAACGAACGTACAGGCACTAAGCAGACCAGAGAGGCATAATGCACAA-CTCAGGG
* * * *
29827264 ATC-GACCCGGTCCCCCTCTGCGTGCTA-TCGATCTCACTGCCACAACCCTCGGTCCGGCTGGG
255 ATCAG-CCCGATCCCCCTCTACGTGCTACT-GATCCCACTGCCACAACCCTCGATCCGGCTGGG
* * *
29827326 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCGCTCA
** ** ** * * ** **
29827390 GTCGATCAGAGAGGCAGAATGCACAACCCAGG-GATCGACCCT-ATCCCCCCGCGTGCTGTCGAT
65 ACCGGCCAGAGAGGCAGAATGCGTAAGCC-GGAGACCGA-CCTGGGCCCCCTACGTGCTGTCGAT
* * * * * *
29827453 CCTGCTACCGCAACCCTCAGTTCAGCCCGATC-TAAGACTGGGAATGAACTCCGTATGC
128 CCTACTACCGCAACCATCAGTCCAGCCAGATCTTAA-ACTAGGAATCAACTCCGTATGC
29827511 TTAGACTAGG
Statistics
Matches: 417, Mismatches: 69, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
315 9 0.02
316 153 0.37
317 244 0.59
318 9 0.02
319 2 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
CCGGCCAGAGAGGCAGAATGCGTAAGCCGGAGACCGACCTGGGCCCCCTACGTGCTGTCGATCCT
ACTACCGCAACCATCAGTCCAGCCAGATCTTAAACTAGGAATCAACTCCGTATGCATAAGTCAAC
CCACGAAACGAACGTACAGGCACTAAGCAGACCAGAGAGGCATAATGCACAACTCAGGGATCAGC
CCGATCCCCCTCTACGTGCTACTGATCCCACTGCCACAACCCTCGATCCGGCTGGG
Found at i:29827425 original size:159 final size:156
Alignment explanation
Indices: 29826693--29827510 Score: 576
Period size: 159 Copynumber: 5.2 Consensus size: 156
29826683 AACTCAGTAT
* * * *
29826693 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * *
29826758 CCGGTCAGAGAGGTAGAATGCGTAAGCCGGGGACCGACCTGG-GCCCCCTGCGTGCTGTCGATCC
65 CCGATCAGAGAGGCAGAATGCGCAA-CCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * * *
29826822 TACTACCGCAACCATCAGTCCAG-TCAGA
129 TACTGCCACAACCCTCGGTCCGGCT-GGA
* * * * * * *
29826850 TCTTAGACTAGGAATGAACTCCGTGTGCCTAAGTCAGCCCACGAAACGAGCGTACAGGCACTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * *
29826915 CAGACCAGATAGGCATAATGTGCAACTCAGGGATC-AGCCCGATCCCCCTCTACGTGCT-ACTGA
65 CCGATCAGAGAGGCAGAATGCGCAAC-CAGGGATCGA-CCCGGTCCCCC-CTGCGTGCTGTC-GA
** * *
29826978 TCCCGCTGCCACAACCCTCGATCCGGCTGGG
126 TCCTACTGCCACAACCCTCGGTCCGGCTGGA
* *
29827009 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * * *
29827074 CCG-GCCGAAGGGGCAGAATGCGTAAGCTGGAGATC-ATCTCGGTCCCTCCTACGTGCTGTCGAT
65 CCGATCAG-AGAGGCAGAATGCGCAACCAGG-GATCGA-CCCGGTCCCCCCTGCGTGCTGTCGAT
* * ** * * *
29827137 CCTGCTGTCGTAAGCCTCGGTCTGACCT-GA
127 CCTACTGCCACAACCCTCGGTCCG-GCTGGA
* * * * * * ** * * * *
29827167 TCTTAAACTGGGAATCAACTCCGTATGCATAAGTCAACCCACGAAATGAATGTTCGGGCACTAAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
29827232 CCGATCGGAGAGGCATAATGCACAAGCTGAGGATCGACCCGGTCCCCCTCTGCGTGCTATCGAT-
65 CCGATCAGAGAGGCAGAATGCGCAACCAG-GGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
*
29827296 CTCACTGCCACAACCCTCGGTCCGGCTGGG
128 CT-ACTGCCACAACCCTCGGTCCGGCTGGA
* *
29827326 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTGCAGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCGCTCA
* * **
29827390 GTCGATCAGAGAGGCAGAATGCACAACCCAGGGATCGACCCTATCCCCCC-GCGTGCTGTCGATC
64 GCCGATCAGAGAGGCAGAATGCGCAA-CCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
* * * * * * **
29827454 CTGCTACCGCAACCCTCAGTTCAGCCCGA
128 CTACTGCCACAACCCTCGGTCCGGCTGGA
* *
29827483 TCTAAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
29827511 TTAGACTAGG
Statistics
Matches: 504, Mismatches: 133, Indels: 48
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.01
157 132 0.26
158 132 0.26
159 231 0.46
160 5 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGATCAGAGAGGCAGAATGCGCAACCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCCGGCTGGA
Found at i:29827525 original size:26 final size:26
Alignment explanation
Indices: 29827487--29827536 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29827477 GCCCGATCTA
*
29827487 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACCCCGTATGCTT
29827513 AGACTAGGG-ATGAACCCCGTATGC
1 AGACT-GGGAATGAACCCCGTATGC
29827537 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACCCCGTATGCTT
Found at i:29828232 original size:159 final size:158
Alignment explanation
Indices: 29828045--29828344 Score: 375
Period size: 159 Copynumber: 1.9 Consensus size: 158
29828035 TCTTAGACTG
* * * ** *
29828045 GGAATGAACTCCGTAGGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGTTGAGCCAACCGGAG
1 GGAATGAACTCCCTAGGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGCCAACCGGAG
* * * * *
29828110 TGGCATAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAT
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGATCCCGCTGCCAT
29828175 AACCCTCGGTCCGGCTGGGGCTAGGACAT
130 AACCCTCGGTCCGGCTGGGGCTAGGACAT
* * ** * * * *
29828204 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGTGGGCACTCAGCCGATCGGAG
1 GGAATGAACTCCCTAGGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGCCAACCGGAG
* * * * *
29828269 AGGCAGAATGCGCAAGCCGGGGATCGATCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTA
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCCGCTGCCATA
29828334 ACCCTCGGTCC
131 ACCCTCGGTCC
29828345 AGTCCGATCT
Statistics
Matches: 117, Mismatches: 24, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
158 34 0.29
159 83 0.71
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (158 bp):
GGAATGAACTCCCTAGGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGCCAACCGGAG
AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCCGCTGCCATA
ACCCTCGGTCCGGCTGGGGCTAGGACAT
Found at i:29830509 original size:27 final size:27
Alignment explanation
Indices: 29830479--29830539 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
29830469 TGATAGAGTT
*
29830479 CAAGCCTCTGAACAAGTTTGAGTCTAC
1 CAAGCCCCTGAACAAGTTTGAGTCTAC
29830506 CAAGCCCCTGAACAAGTTTGAGTCTAC
1 CAAGCCCCTGAACAAGTTTGAGTCTAC
29830533 CAAGCCC
1 CAAGCCC
29830540 AAGGGTAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (27 bp):
CAAGCCCCTGAACAAGTTTGAGTCTAC
Found at i:29835059 original size:26 final size:26
Alignment explanation
Indices: 29835021--29835073 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29835011 GGCTCAAACT
29835021 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29835047 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29835073 C
1 C
29835074 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29835089 original size:27 final size:26
Alignment explanation
Indices: 29835032--29835090 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
29835022 TTAGACTGGG
* ***
29835032 AATGAACTCCGTATGCTTAGACATGG
1 AATGAACTCCGTATGCTAAGACAACC
29835058 AATGAACTCCGTATGCCTAAGACAACC
1 AATGAACTCCGTATG-CTAAGACAACC
*
29835085 CATGAA
1 AATGAA
29835091 ACGAGCGTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (26 bp):
AATGAACTCCGTATGCTAAGACAACC
Found at i:29835236 original size:26 final size:26
Alignment explanation
Indices: 29835207--29835257 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29835197 GGTCCAATCA
29835207 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
29835233 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
29835258 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:29835456 original size:25 final size:26
Alignment explanation
Indices: 29835419--29835470 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
29835409 CTAATCTGAT
29835419 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29835444 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29835470 C
1 C
29835471 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29835787 original size:159 final size:157
Alignment explanation
Indices: 29835444--29835945 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 157
29835434 AACTCGTATG
* * * *
29835444 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGT-GGGTGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAATGAGCGT-TCGAGCGCTCAG
* * * * * * * *
29835508 CCGATCGGAGAGGTAGAATCCATAAGCCAAGGACCGACCCGGTCCCCCCTGCGTGCTATCGATCC
64 CCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
* **
29835573 TACTACCGTAACCCTCGGTCCGGTCCGAT
129 CACTACCACAACCCTCGGTCCGGTCCGAT
* * *
29835602 CTTAGAC-TAGAAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAATGAGCGTTCGAGCGCTCAG
* * ** * *
29835666 CCGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTATCGGTC
64 CCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATC
* * ** *
29835731 CCACTACCACAACCCTTGGTTCGGCTGGGGT
128 CCACTACCACAACCCTCGGTCCGG-TCCGAT
* * * *
29835762 -TTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAA-CATGCGTGC-AGGCGCTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAATGA-GCGTTCGA-GCGCTCA
* * * * * *
29835824 GCCAACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCC-AGTCCCTCATGCGTGCTACCTAT
63 GCCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGA-TCCCCCCTGCGTGCTATCGAT
** ** * *
29835888 CCTGCTGTCGCAACCCTTGGTCCGGTCCGAT
127 CCCACTACCACAACCCTCGGTCCGGTCCGAT
*
29835919 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29835946 TTAGGCTGGG
Statistics
Matches: 273, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 143 0.52
159 120 0.44
160 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAATGAGCGTTCGAGCGCTCAGCC
GACCGAAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCCA
CTACCACAACCCTCGGTCCGGTCCGAT
Found at i:29835955 original size:26 final size:26
Alignment explanation
Indices: 29835919--29835969 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29835909 CCGGTCCGAT
*
29835919 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29835945 CTTAGGCTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
29835970 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29836302 original size:26 final size:26
Alignment explanation
Indices: 29836266--29836322 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
29836256 TCTTGCTGCT
29836266 GGTCCTGTAACCGCAACCCTCGGTCC
1 GGTCCTGTAACCGCAACCCTCGGTCC
*
29836292 GGTCCTGTAACCGTAACCCTCGGTCC
1 GGTCCTGTAACCGCAACCCTCGGTCC
29836318 GGTCC
1 GGTCC
29836323 GATATTAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.14, C:0.40, G:0.25, T:0.21
Consensus pattern (26 bp):
GGTCCTGTAACCGCAACCCTCGGTCC
Found at i:29836356 original size:26 final size:26
Alignment explanation
Indices: 29836327--29836377 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29836317 CGGTCCGATA
29836327 TTAGAC-TGAGAATGAACTCCGTATGT
1 TTAGACATG-GAATGAACTCCGTATGT
29836353 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
29836378 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:29836985 original size:26 final size:26
Alignment explanation
Indices: 29836934--29836986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29836924 GGCTCAAAAT
**
29836934 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29836960 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29836986 C
1 C
29836987 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29837462 original size:26 final size:26
Alignment explanation
Indices: 29837433--29837485 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29837423 CCGATCCAAT
29837433 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
29837459 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
29837485 C
1 C
29837486 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:29839182 original size:26 final size:26
Alignment explanation
Indices: 29839144--29839196 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29839134 CTGGTCTGAT
29839144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29839170 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29839196 C
1 C
29839197 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29839674 original size:26 final size:26
Alignment explanation
Indices: 29839645--29839697 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29839635 CTGGTCCGAT
*
29839645 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
29839671 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29839697 C
1 C
29839698 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29840420 original size:26 final size:26
Alignment explanation
Indices: 29840380--29840432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29840370 GGCTCAAAAT
29840380 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
29840406 CTTAGACATGG-AATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
29840432 C
1 C
29840433 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:29840783 original size:160 final size:159
Alignment explanation
Indices: 29840405--29840833 Score: 413
Period size: 160 Copynumber: 2.7 Consensus size: 159
29840395 AACTCCGTAT
* *
29840405 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
29840470 CCGGTCGGAGAGGCAGAATGCGGAAG-CTGAGGATCACCCCGATCCCCCCTTGTGAGCTGTCGAT
66 CCGGTCGAAGAGGCAGAATGCGCAAGTCAGAGGATCAGCCCGATCCCCCCTTGCGAGCTACCGAT
* * ** **
29840534 CTGCTATCGTAACCCTCGATCTGGTCTGA
131 CCGCTACCACAACCCTCGATCCAGTCTGA
* * * * * * *
29840563 TC-T-GACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTG
1 GCTTAGACA-T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
29840626 AGCCGGTCGAAGAGGCATAATGCGCAAGTCAGGGGATCAGCCCGAT-CCCCGTCTGCGTGCTACC
64 AGCCGGTCGAAGAGGCAGAATGCGCAAGTCAGAGGATCAGCCCGATCCCCCCT-TGCGAGCTACC
* * *
29840690 GATCCCGCTGCCACAACCCTCGGTCCAG-CTGGG
128 GAT-CCGCTACCACAACCCTCGATCCAGTCT-GA
* * *
29840723 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
29840788 TCGG-CTAGAGGGGCAGAATGCGCAAGTCA-TGGATCGGCCCGGTCCC
66 CCGGTCGA-AGAGGCAGAATGCGCAAGTCAGAGGATCAGCCCGATCCC
29840834 TCCTAAGTGC
Statistics
Matches: 215, Mismatches: 46, Indels: 18
0.77 0.16 0.06
Matches are distributed among these distances:
156 4 0.02
157 2 0.01
158 76 0.35
159 39 0.18
160 88 0.41
161 2 0.01
162 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGTCAGAGGATCAGCCCGATCCCCCCTTGCGAGCTACCGAT
CCGCTACCACAACCCTCGATCCAGTCTGA
Found at i:29840916 original size:25 final size:25
Alignment explanation
Indices: 29840879--29840930 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
29840869 GTCCGGTCTG
*
29840879 ATCTTAGATTGGGAATGAACTCCGT
1 ATCTTAGACTGGGAATGAACTCCGT
*
29840904 ATCTTAGACTGGGGATGAACTCCGT
1 ATCTTAGACTGGGAATGAACTCCGT
29840929 AT
1 AT
29840931 GCCTAAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (25 bp):
ATCTTAGACTGGGAATGAACTCCGT
Found at i:29841206 original size:341 final size:342
Alignment explanation
Indices: 29840569--29841363 Score: 989
Period size: 341 Copynumber: 2.3 Consensus size: 342
29840559 CTGATCTGAC
* * * * *
29840569 ACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGCCGGTC
1 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTC
* * *
29840634 GAAGAGGCATAATGCGCAAGTCAGGGGATCAGCCCGATCCCCGTCTGCGTGCTACCGATCCCGCT
66 GAAGAGGCATAATGCGCAAGTCA-GGGATCAGCCAG-TCCCCCTCTACGTGCTACCGATCCCGCT
*
29840699 GCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCA
129 GCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCA
* * * * * * * *
29840764 CGAAACGGGCGTGCGGGCGCTCAGTCGGCTAGAGGGGCAGAATGCGCAAGTCATGGATCGGCCCG
194 CGAAACGGGCATCCGGGCACACAGCCGGCTAGAGAGGCAGAATGCACAAGTCATGGATCGACCCG
* * *
29840829 GTCCCTCCTAAGTGCTGGCGATCCTGCTACCGCAA-CCTCAGTCCGGTCTGATCTTAGATTGGGA
259 GTCCCTCCCAAGTGCTGGCGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGA
*
29840893 ATGAACTCCGTAT-CTTAG
324 ATGAACTCCATATGCTTAG
* *
29840911 ACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
1 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTC
*
29840976 GAAGAGGCATAATGCGTAAGTCAGGGATCAGTCCAGTCCCCCTCTACGTGCTACCGATCCCGCTG
66 GAAGAGGCATAATGCGCAAGTCAGGGATCAG-CCAGTCCCCCTCTACGTGCTACCGATCCCGCTG
* *
29841041 CCATAACCCTCGATCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
130 CCACAACCCTCGATCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCA
* * * * *
29841105 CGAAATGGGCATCCGGGCACACAGCCGG-TCGGAGAGGTAGAATGCATAAG-C-TGGGGATTGAC
194 CGAAACGGGCATCCGGGCACACAGCCGGCT-AGAGAGGCAGAATGCACAAGTCAT--GGATCGAC
* * ** * *
29841167 CCTGTCCC-CCC-AGCATGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGAC
256 CCGGTCCCTCCCAAG--TGCTGGCGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGAC
29841230 TGGGAATGAACTCCATATGCTTAG
319 TGGGAATGAACTCCATATGCTTAG
* * * * * *
29841254 ATTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGACCATGCGGACACTCAGCCGG-C
1 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTC
* * * *
29841318 CATCA-AGGCATAATGCGCAGGTCGGGGATCAGCCCGGTCCCCCTCT
66 GA--AGAGGCATAATGCGCAAGTCAGGGATCAG-CCAGTCCCCCTCT
29841364 GCATCCTGTC
Statistics
Matches: 391, Mismatches: 51, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
339 3 0.01
340 5 0.01
341 163 0.42
342 123 0.31
343 96 0.25
344 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (342 bp):
ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTC
GAAGAGGCATAATGCGCAAGTCAGGGATCAGCCAGTCCCCCTCTACGTGCTACCGATCCCGCTGC
CACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACG
AAACGGGCATCCGGGCACACAGCCGGCTAGAGAGGCAGAATGCACAAGTCATGGATCGACCCGGT
CCCTCCCAAGTGCTGGCGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAAT
GAACTCCATATGCTTAG
Found at i:29841259 original size:26 final size:26
Alignment explanation
Indices: 29841223--29841275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29841213 CTGGTCTGAT
29841223 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29841249 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29841275 C
1 C
29841276 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29841531 original size:355 final size:339
Alignment explanation
Indices: 29840569--29841532 Score: 986
Period size: 341 Copynumber: 2.8 Consensus size: 339
29840559 CTGATCTGAC
* * * * * * * * * * *
29840569 ACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGCCGGTC
1 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCATGCGGACACTCAGCCGGTC
* * *
29840634 GAAGAGGCATAATGCGCAAGTCAGGGGATCAGCCC-GATCCCCGTCTGCGTGCTACCGATCCCGC
66 CAAGAGGCATAATGCGCAAGTCA-GGGATCAGCCCAG-TCCCCCTCTACGTGCTACCGATCCCGC
* *
29840698 TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCC
129 TGCCACAACCCTCGGT-CAGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * * *
29840763 ACGAAACGGGCGTGCGGGCGCTCAGTCGGCTAGAGGGGCAGAATGCGCAAGTCATGGATCGGCCC
193 ACGAAACGGGCGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCT
* * *
29840828 GGTCCCTCCTAAGTGCTGGCGATCCTGCTACCGCAACCTCAGTCCGGTCTGATCTTAGATTGGGA
258 GGTCCC-CCCAAGTGCTGGCGATCCTACTACCGCAACCTCAGTCCGGTCTGATCTTAGACTGGGA
*
29840893 ATGAACTCCGTATCTTAG
322 ATGAACTCCATATCTTAG
* * * * * *
29840911 ACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
1 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCATGCGGACACTCAGCCGGTC
* * *
29840976 GAAGAGGCATAATGCGTAAGTCAGGGATCAGTCCAGTCCCCCTCTACGTGCTACCGATCCCGCTG
66 CAAGAGGCATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCTACGTGCTACCGATCCCGCTG
* * *
29841041 CCATAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
131 CCACAACCCTCGGTCAGA-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * * ** ** *
29841106 GAAATGGGCATCCGGGCACACAGCCGGTCGGAGAGGTAGAATGCATAAGCTGGGGATTGACCCT-
195 GAAACGGGCGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGAATGCGCAAGCCAGGGATTG-GCCTG
* ** * *
29841170 GTCCCCCC-AGCATGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
259 GTCCCCCCAAG--TGCTGGCGATCCTACTACCGCAA-CCTCAGTCCGGTCTGATCTTAGACTGGG
29841234 AATGAACTCCATATGCTTAG
321 AATGAACTCCATAT-CTTAG
* *
29841254 ATTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGACCATGCGGACACTCAGCCGG-C
1 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCATGCGGACACTCAGCCGGTC
* * *
29841318 CATCA-AGGCATAATGCGCAGGTCGGGGATCAGCCCGGTCCCCCTCTGCATCCTGTCGATCT-CG
66 CA--AGAGGCATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCT--A--C-GT-G--CTAC-
** * ***
29841381 CTGTCAGTCTTGCTGCCACAACCCTCGGTCTGATAGGGGCTTAGACATGGAATGAACTTTGTATG
120 C-G--A-TCCCGCTGCCACAACCCTCGGTCAGAT-GGGGCTTAGACATGGAATGAACTCCCTATG
* * * * *
29841446 CCGAAGCCAAGCCACGAAACGAGTGTGCAGGCGCTCAGTCGGTTGGAGAGGCAGAATGCGCAAGC
180 CCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGAATGCGCAAGC
*
29841511 CAGGGATTGGTCTGGTCCCCCC
245 CAGGGATTGGCCTGGTCCCCCC
29841533 TGCGGGCTAT
Statistics
Matches: 512, Mismatches: 86, Indels: 35
0.81 0.14 0.06
Matches are distributed among these distances:
339 2 0.00
340 4 0.01
341 159 0.31
342 123 0.24
343 96 0.19
344 1 0.00
345 1 0.00
347 1 0.00
348 2 0.00
349 1 0.00
350 1 0.00
351 3 0.01
352 1 0.00
354 4 0.01
355 113 0.22
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (339 bp):
ACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCATGCGGACACTCAGCCGGTC
CAAGAGGCATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCTACGTGCTACCGATCCCGCTG
CCACAACCCTCGGTCAGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAACGGGCGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCTGGT
CCCCCCAAGTGCTGGCGATCCTACTACCGCAACCTCAGTCCGGTCTGATCTTAGACTGGGAATGA
ACTCCATATCTTAG
Found at i:29841765 original size:200 final size:199
Alignment explanation
Indices: 29841419--29841868 Score: 566
Period size: 200 Copynumber: 2.3 Consensus size: 199
29841409 TCTGATAGGG
* * *
29841419 GCTTAGACATGGAATGAACTTTGTATGCCGAAGCCAAGCCACGAAACGA--GT-GTGCAGGCGCT
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGGTGCAGGCGCT
** ** * * * * * *
29841481 CAGTCGGTTGGAGAGGCAGAATGCGCAAGCCAGGGATTGGTCTGGTCCCCCCTGCGGGCTATCAA
66 CAACCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCCTACGGGCTACCAA
* * * ** *
29841546 TCTTGCTGCTGGTCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGTCTGGGAATA-AACTC
131 TCCTGCTACTGGTCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGAATAGGAA-AGAACTC
29841610 TGTAT
195 TGTAT
*
29841615 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGTGCAGGCGT
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTG-GTGCAGGCGC
* * * * * *
29841680 TCAACCGGCCGAAGAGGTAGAATGCATAAGTCAGGGATCGGCCTGGTCCCCCCTATGTGCTACCG
65 TCAACCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCCTACGGGCTACCA
* * **
29841745 ATCCTGCTACTGGTCCTGCTATCGCAAGCCTTGGTCCGGTCCGATCTTAGAATAGGAAAGAACTC
130 ATCCTGCTACTGGTCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGAATAGGAAAGAACTC
29841810 TGTAT
195 TGTAT
* *
29841815 GGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTG
29841869 CGGGCACTGA
Statistics
Matches: 217, Mismatches: 32, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
196 46 0.21
198 2 0.01
199 1 0.00
200 168 0.77
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.22
Consensus pattern (199 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGGTGCAGGCGCT
CAACCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCCTACGGGCTACCAA
TCCTGCTACTGGTCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGAATAGGAAAGAACTCT
GTAT
Found at i:29841828 original size:26 final size:26
Alignment explanation
Indices: 29841791--29841841 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29841781 CGGTCCGATC
*
29841791 TTAGAATAGGAAAGAACTCTGTATGG
1 TTAGAATAGGAAAGAACTCCGTATGG
*
29841817 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGA-ATAGGAAAGAACTCCGTATG
29841842 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGAATAGGAAAGAACTCCGTATGG
Found at i:29842115 original size:159 final size:158
Alignment explanation
Indices: 29841817--29842318 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 158
29841807 CTCTGTATGG
* * * *
29841817 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTGAGCC
* ** * * *
29841882 GATTGGAGAGGCAGAATGCGCAAG-CTGGGCACCGCCCCGGTCCCCCCCTGTGTGCTGTCGATCC
66 GATCGGAGAGGCAGAATGCGCAAGCCAAGG-ATCGACCCGAT-CCCCCCTGTGTGCTGTCGATCC
*
29841946 TGCTACCACAACCCTCGGTCCGGTCCGATC
129 TGCTGCCACAACCCTCGGTCCGGTCCGATC
* * * * *
29841976 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAGCCTACAAAATGAGTGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTGAGC
* * * *
29842040 CGGTCGAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATCCCCCTCTGTGTGCTGTCGGTCC
65 CGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCC-CTGTGTGCTGTCGATCC
* * * * * *
29842105 CGCTGGCACAACCCTCAGTCC-GACTGGGTC
129 TGCTGCCACAACCCTCGGTCCGGTC-CGATC
* * *
29842135 TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACAAAAT-AGGCGTGCGGGCGCTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGA-GCGTGCGGGCGCTGAGC
* * * * *
29842199 CGACCGGAGACGCAGAATGCGCAAGCCGAGGATCGACCC-AGTCCCCCCTGCGTGCTGCCGATCC
65 CGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGA-TCCCCCCTGTGTGCTGTCGATCC
* * * * * * *
29842263 TACTGTCGCAACCCTCGATCTGATCTGATC
129 TGCTGCCACAACCCTCGGTCCGGTCCGATC
* *
29842293 CTAGAC-TGGGAATGAACTTCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
29842319 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 58, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 61 0.22
159 210 0.76
160 4 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTGAGCC
GATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGTCCGATC
Found at i:29842333 original size:26 final size:26
Alignment explanation
Indices: 29842294--29842344 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29842284 GATCTGATCC
29842294 TAGACTGGGAATGAACT-TCGTATGCT
1 TAGACTGGGAATGAACTCT-GTATGCT
*
29842320 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
29842345 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:29843043 original size:26 final size:26
Alignment explanation
Indices: 29843005--29843057 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29842995 GGCTCAAACT
29843005 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
29843031 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
29843057 C
1 C
29843058 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29843962 original size:160 final size:158
Alignment explanation
Indices: 29843569--29844070 Score: 510
Period size: 160 Copynumber: 3.2 Consensus size: 158
29843559 ACTCTGTAGG
* * *
29843569 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAA-GGAGCGTGCAGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGG-GCGTGCGGGCGCTCAG
* *
29843633 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCAGTCCCCCCCGCGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCCCCGCGTGCTGTCGATCC
* ** * *
29843698 TACTGTCGCAACCCTTGGTCCGATTCGAT
130 CACTACCACAACCCTCGGTCCGATTCGAT
* * * * *
29843727 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
* * *
29843791 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTCTGCGTGCTGTCGGT
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCCC-C-GCGTGCTGTCGAT
* * * * *
29843856 CCCATTACCACAACCCTCGGTTCGGTTGGGGT
128 CCCACTACCACAACCCTCGGTCCGATT-CGAT
* * * * *
29843888 -TTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
** * * * * ** * *
29843952 CGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCTACCCGGT-CCCCCTGTATGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCCCCGCGTGCTGTCGATCCC
* * * * *
29844016 GCTATCGCAACCCTCGATCCGATCCGAT
131 ACTACCACAACCCTCGGTCCGATTCGAT
* *
29844044 CTTAGAC-TGGGAATGAGCTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29844071 TTAGACTAGG
Statistics
Matches: 276, Mismatches: 60, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 48 0.17
158 97 0.35
159 7 0.03
160 118 0.43
161 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCCCCGCGTGCTGTCGATCCC
ACTACCACAACCCTCGGTCCGATTCGAT
Found at i:29844085 original size:26 final size:26
Alignment explanation
Indices: 29844044--29844095 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29844034 CCGATCCGAT
* *
29844044 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29844070 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
29844096 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29846050 original size:26 final size:26
Alignment explanation
Indices: 29846013--29846064 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29846003 GCTCAAAATA
*
29846013 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
29846039 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
29846065 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:29849374 original size:26 final size:26
Alignment explanation
Indices: 29849336--29849388 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29849326 GGCTCAAAAT
* *
29849336 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
29849362 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
29849388 C
1 C
29849389 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:29849707 original size:26 final size:26
Alignment explanation
Indices: 29849678--29849730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29849668 CTGATCTAAT
*
29849678 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29849704 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29849730 C
1 C
29849731 CTAAGCCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29850087 original size:26 final size:26
Alignment explanation
Indices: 29850058--29850110 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29850048 CTGGTCTGAT
*
29850058 CTTAGAC-TGAGAATGAACTCTGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
29850084 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29850110 C
1 C
29850111 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29850184 original size:367 final size:341
Alignment explanation
Indices: 29849333--29850193 Score: 904
Period size: 367 Copynumber: 2.4 Consensus size: 341
29849323 CATGGCTCAA
*
29849333 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACACCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
29849398 CCTACGAAATGAGCGTGCGGGCACTCAACCGGCTGAAGAGGCATAATGCGCAAGCCGGGGATC-G
66 CCCACGAAATGAGCATGCGGGCACTCAACCGACCGAAGAGGCATAATGCGCAAG-CGGGGATCAG
* * * *
29849462 ACCCGGTCCCCCTTTGCGTGCTACTGGTCCTACTGCCACAACCCTCAGTTCGACTAGGGCTTAGA
130 -CCCGATCCCCCTCTGCGTGCTACTGGTCCTACTACCAAAACCCTCAGTTCGACTAGGGCTTAGA
* *
29849527 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCAGGCGCTCAGCCGACCA
194 CATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGAGCATGCAGGCGCTCAGCCGACCA
* * * * * *
29849592 GAGAGGCAGAATGCGTAAGTCGGGGATCAGCCTGGTCCCCCTGCGTGCTTCCCATCCTACTGTCA
259 GAGAGGCAGAATACGCAAATCGGGGATCAGCCCGGTCCCCCTACGTACTTCCCATCCTACTGTCA
*
29849657 CAACCCTCGGTCTGATCT
324 CAACCCTCAGTCTGATCT
* *
29849675 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCG
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* *
29849739 ACCCACGAAATGAGCATACGGGCACTCAGCCGACCGGAGAGGCCAGTCAGAGAGGCATAATGCAC
65 ACCCACGAAATGAGCATGCGGGCACTCA----ACC---GA--CC-G--A-AGAGGCATAATGCGC
* *
29849804 AAGCTGGGGATCAGCCTGATCCCCCTCTGCGTGTTACCGATCCCGCTGTCGGTCCTACTACCAAA
117 AAGC-GGGGATCAGCCCGATCCCCCTCTGCGTG----C--T---AC--T-GGTCCTACTACCAAA
* *
29849869 ACCCTCAGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAAT
169 ACCCTCAGTTCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAAT
* * * * *
29849934 GAGCGTGCAGGTGCTTAGCCGATC-GAAGAGGCAGAATACGCAAATTGGGGATC-GACCCGGTCC
234 GAGCATGCAGGCGCTCAGCCGACCAG-AGAGGCAGAATACGCAAATCGGGGATCAG-CCCGGTCC
* *
29849997 CCCATACGTACTGTCGATCC-TGCTACTGGTCCTGCTATCGTAACCCTCAGTCTGGTCT
297 CCC-TACGTACT-TC---CCATCCTACT-G---T-C-A-C--AACCCTCAGTCTGATCT
* *
29850055 GATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
29850120 CCCATAAAATGAGCATGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCGTAAGTCGAGGATCAG
66 CCCACGAAATGAGCATGCGGGCACTCAACCGACCGAAGAGGCATAATGCGCAAG-CGGGGATCAG
29850185 CCCGATCCC
130 CCCGATCCC
29850194 TCATGCGTGA
Statistics
Matches: 427, Mismatches: 46, Indels: 67
0.79 0.09 0.12
Matches are distributed among these distances:
341 1 0.00
342 84 0.20
346 3 0.01
349 1 0.00
351 1 0.00
352 1 0.00
354 2 0.00
355 40 0.09
356 1 0.00
359 1 0.00
361 1 0.00
364 1 0.00
366 3 0.01
367 158 0.37
368 8 0.02
369 2 0.00
370 1 0.00
371 8 0.02
372 3 0.01
373 2 0.00
375 1 0.00
376 4 0.01
377 1 0.00
378 1 0.00
380 97 0.23
381 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (341 bp):
AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAATGAGCATGCGGGCACTCAACCGACCGAAGAGGCATAATGCGCAAGCGGGGATCAGC
CCGATCCCCCTCTGCGTGCTACTGGTCCTACTACCAAAACCCTCAGTTCGACTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGAGCATGCAGGCGCTCAGCCGACCAGA
GAGGCAGAATACGCAAATCGGGGATCAGCCCGGTCCCCCTACGTACTTCCCATCCTACTGTCACA
ACCCTCAGTCTGATCT
Found at i:29850497 original size:158 final size:158
Alignment explanation
Indices: 29850241--29850900 Score: 535
Period size: 159 Copynumber: 4.2 Consensus size: 158
29850231 TCGGTTCGAT
* * * * * * *
29850241 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGAGCGCACAGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * *
29850306 CGGTCGGAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTGTCGGTCC
66 CGGTCGGAGAGGCAGAATGCACAAGCCG-GGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCC
*
29850371 CGCAGCCACAACCCTCTGTCCGACTAGGG
130 CGCAGCCACAACCCTCGGTCCGACTAGGG
* * * * *
29850400 CTTAGAC-ATGGAATGAACTCCTTATGCCTAGGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* ** * *
29850464 CTGGT-GGAGAGGCAGAATGTGCAAGCCGTGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATGCACAAGCCG-GGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTC
** * * * * * * **
29850528 CTACTGTCGCAACCCTCGGCTCAGTC-CGTT
129 CCGCAGCCACAACCCTCGG-TCCGACTAGGG
* ** ** * * * *
29850558 CTTAGACTAGGAATGAACTTCGTATGCCTAAATCAACCCACGAAATTAGTGTTCAGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * * * * * * * *
29850623 CGATCGAAGAGGCATAATGCACAAGTCAGGGATCGGCCCGGTCCACCTCTGCATGCTGCCAGTCT
66 CGGTCGGAGAGGCAGAATGCACAAG-CCGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCC
* *
29850688 CGCTA-CCACAACCCTCGGTCCGGCTGGGG
130 CGC-AGCCACAACCCTCGGTCCGACTAGGG
* * * * *
29850717 CTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* * * * * * **
29850781 CTGGCCGGAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGT-CCCC-CTACATGCTGCCAATC
65 CCGGTCGGAGAGGCAGAATGCACAAG-CCGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTC
** * * * *
29850844 CTACTGTCACAACCCTCGGTCTGATCT-GGT
129 CCGCAGCCACAACCCTCGGTCCGA-CTAGGG
*
29850874 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
29850901 TTAGACTGGG
Statistics
Matches: 387, Mismatches: 103, Indels: 24
0.75 0.20 0.05
Matches are distributed among these distances:
157 55 0.14
158 128 0.33
159 202 0.52
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCACAAGCCGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCC
GCAGCCACAACCCTCGGTCCGACTAGGG
Found at i:29850674 original size:317 final size:313
Alignment explanation
Indices: 29850083--29850900 Score: 917
Period size: 317 Copynumber: 2.6 Consensus size: 313
29850073 AACTCTGTAT
* * * * * *
29850083 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * * *
29850148 CCGACCGAAGAGGCAGAATGCGTAAGTCGAGGATC-AGCCCGATCCCTCATGCGTGATGTCGATC
66 CTG-GCGGAGAGGCAGAATGCGCAAGCCG-GGATCGA-CCCGGTCCCCCCTGCGTGCTGTCGATC
* * * * * * *
29850212 CTACT-ACCATAACCTTGATTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
128 CTACTGTCCA-ACCCTCG-GTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCA
* ** * * *
29850276 TCCCACGAAATGAGCGCACAGGTGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGAGGATCA
191 ACCCACGAAATGAGCGCACAGGCACTGAGCCGATCGAAGAGGCATAATGCACAAGCAGAGGATCA
* * * * *
29850341 ACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGC-AGCCACAACCCTCTGTCCGACTAGG
256 ACCCGATCCACCTCTGCATGCTGCCAGTCCCGCTA-CCACAACCCTCGGTCCGACTAGG
* * *
29850399 GCTTAGACATGGAATGAACTCCTTATGCCTAGGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* *
29850464 CTGGTGGAGAGGCAGAATGTGCAAGCCGTGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCC
66 CTGGCGGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGGT-CCCCCCTGCGTGCTGTCGATCC
* * *
29850529 TACTGTCGCAACCCTCGGCTCAGTCCGTTCTTAGACTAGGAATGAACTTCGTATGCCTAAATCAA
129 TACTGTC-CAACCCTCGG-TCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAA
* * ** *
29850594 CCCACGAAATTAGTGTTCAGGCACTGAGCCGATCGAAGAGGCATAATGCACAAGTCAG-GGATCG
192 CCCACGAAATGAGCGCACAGGCACTGAGCCGATCGAAGAGGCATAATGCACAAG-CAGAGGATCA
* * * * *
29850658 GCCCGGTCCACCTCTGCATGCTGCCAGTCTCGCTACCACAACCCTCGGTCCGGCTGGG
256 ACCCGATCCACCTCTGCATGCTGCCAGTCCCGCTACCACAACCCTCGGTCCGACTAGG
*
29850716 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * *
29850781 CTGGCCGGAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGT-CCCCCTACATGCTGCCAATCC
66 CTGG-CGGAGAGGCAGAATGCGCAAG-CCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
29850845 TACTGTCACAACCCTCGGTCTGATCTGGTCTTAGACTGGGAATGAACTCCGTATGC
129 TACTGTC-CAACCCTCGGTCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
29850901 TTAGACTGGG
Statistics
Matches: 423, Mismatches: 69, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
315 32 0.08
316 146 0.35
317 207 0.49
318 36 0.09
319 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (313 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CTGGCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTA
CTGTCCAACCCTCGGTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCA
CGAAATGAGCGCACAGGCACTGAGCCGATCGAAGAGGCATAATGCACAAGCAGAGGATCAACCCG
ATCCACCTCTGCATGCTGCCAGTCCCGCTACCACAACCCTCGGTCCGACTAGG
Found at i:29850721 original size:159 final size:157
Alignment explanation
Indices: 29850083--29850900 Score: 417
Period size: 159 Copynumber: 5.2 Consensus size: 157
29850073 AACTCTGTAT
* ** * * * *
29850083 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCATGCGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCA
* ** * * * * * * *
29850147 ACCGACCGAAGAGGCAGAATGCGTAAGTC-GAGGATC-AGCCCGATCCCTCATGCGTGATGTCGA
65 GCCGACCGAAGAGGCAGAATGCACAAGTCAG-GGATCGA-CCCGGTCCC-CCTACATGCTGCCAA
* * * * * *
29850210 TCCTACTACCATAA-CCTTGATTCG-GTTCGA
127 TCCTACTACCACAACCCTCGGTCCGAGCT-GG
* * ** * * ** ** *
29850240 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGAGCGCACAGGTGCTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAG
** * * * * * * * * **
29850305 CCGGTCGGAGAGGCATAATGCACAAG-CCGAGGATCAACCCGATCCCCCTCTGCGTGCTGTCGGT
66 CCGACCGAAGAGGCAGAATGCACAAGTCAG-GGATCGACCCGGT-CCCC-CTACATGCTGCCAAT
** *
29850369 CCCGC-AGCCACAACCCTCTGTCCGA-CTAGG
128 CCTACTA-CCACAACCCTCGGTCCGAGCT-GG
* ** * * * * *
29850399 GCTTAGAC-ATGGAATGAACTCCTTATGCCTAGGCCAACCCATGAAACGGGCGTACGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCA
* ** * ** * * * * *
29850463 GCTG-GTGGAGAGGCAGAATGTGCAAG-CCGTGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGA
65 GCCGACCGAAGAGGCAGAATGCACAAGTCAG-GGATCGACCCGGT--CCCCCTACATGCTGCCAA
** * * *
29850526 TCCTACTGTCGCAACCCTCGG-CTC-AGTCCGT
127 TCCTACTACCACAACCCTCGGTC-CGAG-CTGG
* * * ** * * *
29850557 TCTTAGACTAGGAATGAACTTCGTATGCCTAAATCAACCCACGAAATTAGTGTTCAGGCACTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * * *
29850622 CCGATCGAAGAGGCATAATGCACAAGTCAGGGATCGGCCCGGTCCACCTCTGCATGCTGCCAGT-
66 CCGACCGAAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCC-CC-CTACATGCTGCCAATC
*
29850686 CTCGCTACCACAACCCTCGGTCCG-GCTGGG
129 CT-ACTACCACAACCCTCGGTCCGAGCT-GG
* * * * * *
29850716 GCTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCA
* * *
29850780 GCTGGCCGGAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCTACATGCTGCCAATCC
65 GCCGACCGAAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCTACATGCTGCCAATCC
** * *
29850845 TACTGTCACAACCCTCGGTCTGATCTGG
130 TACTACCACAACCCTCGGTCCGAGCTGG
* *
29850873 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTAGGAATGAACTCCGTATGC
29850901 TTAGACTGGG
Statistics
Matches: 507, Mismatches: 127, Indels: 54
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 145 0.29
158 148 0.29
159 210 0.41
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAG
CCGACCGAAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCTACATGCTGCCAATCCT
ACTACCACAACCCTCGGTCCGAGCTGG
Found at i:29850910 original size:26 final size:26
Alignment explanation
Indices: 29850874--29850926 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29850864 CTGATCTGGT
*
29850874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29850900 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29850926 C
1 C
29850927 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29851261 original size:25 final size:25
Alignment explanation
Indices: 29851233--29851282 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
29851223 TCTGATCTTA
* **
29851233 GACTGGGGATGAACTCTGTATGCTT
1 GACTAGGGATGAACTCCATATGCTT
29851258 GACTAGGGATGAACTCCATATGCTT
1 GACTAGGGATGAACTCCATATGCTT
29851283 AAGTCAACCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (25 bp):
GACTAGGGATGAACTCCATATGCTT
Found at i:29851269 original size:354 final size:352
Alignment explanation
Indices: 29850689--29851662 Score: 1394
Period size: 354 Copynumber: 2.8 Consensus size: 352
29850679 TGCCAGTCTC
* **
29850689 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAC
* * * * * * *
29850754 CCATGAAACGGGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCACAAGTC-AGGGATCGA
66 CCATGAAACGAGCATGCGGGGGTTCAGCCGACCGGAGAGGTAGAATGCACAAG-CAAGGGATCGA
* * ** * * * * *
29850818 CCCGGTCCCCCTACATGCTGCCAATCCTACTGTCACAACCCTCGGTCTGATCTGGTCTTAGACTG
130 CCCGGTCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGTTC-GATCTGATCTTAGACTG
29850883 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGA
194 GGAATGAACTCCGTATGCTT-GACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGA
* ** *
29850948 GCGTGCGGGTGCTCAACCGGTCGGAGAGGCATAATGAACAAGTCGGGGATCAGCCCGATCCCCCT
258 GCGTACGGGTGCTCAACCAATCGGAGAGGCATAATGAACAAGTCCGGGATCAGCCCGATCCCCCT
29851013 CTACGTGCTACTGATCCCGCTGTCAGTCCT
323 CTACGTGCTACTGATCCCGCTGTCAGTCCT
* *
29851043 GCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCAGTATGCCAAAGCCAAC
1 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAC
* * *
29851108 CCA-CAGAACGAGCATACGGGGGTTCAGCCGACCGGAGAGGTAGAATGCACAAGCAAGGGATCGG
66 CCATGA-AACGAGCATGCGGGGGTTCAGCCGACCGGAGAGGTAGAATGCACAAGCAAGGGATCGA
*
29851172 CTCGGTCCCTCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAGTTCGATCTGATCTTAGACT
130 CCCGGTCCC-CCTGCGTGCTATCGATCCTGCTGCCACAACCCTC-GTTCGATCTGATCTTAGACT
* * * * * *
29851237 GGGGATGAACTCTGTATGCTTGACTAGGGATGAACTCCATATGCTTAAGTCAACCCATGAAATGA
193 GGGAATGAACTCCGTATGCTTGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGA
** *
29851302 GCGTACGGGTGCTCAACCAATCGGAGAGGCATAATGAGTAAGTCCGGGATCAGCCCGATCCCTCT
258 GCGTACGGGTGCTCAACCAATCGGAGAGGCATAATGAACAAGTCCGGGATCAGCCCGATCCCCCT
** * *
29851367 CTGTGTGCTATTGATCCCGCTGTCGGTCCT
323 CTACGTGCTACTGATCCCGCTGTCAGTCCT
*
29851397 GCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAC
* * * *
29851462 CCATGAAATGAGCATGCAGGGGTTCAGACGATCGGAGAGGTAGAATGCACAAGCAAGGGATCGAC
66 CCATGAAACGAGCATGCGGGGGTTCAGCCGACCGGAGAGGTAGAATGCACAAGCAAGGGATCGAC
* * *
29851527 CCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTTTGGTCTGATCTTAGACTG
131 CCGGT-CCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTC-GTTCGATCTGATCTTAGACTG
* *
29851592 GGAATGAACTCCGTATGCTTGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAG
194 GGAATGAACTCCGTATGCTTGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG
29851657 CGTACG
259 CGTACG
29851663 AGCGCTTAAT
Statistics
Matches: 549, Mismatches: 65, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
353 2 0.00
354 479 0.87
355 65 0.12
356 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (352 bp):
GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAC
CCATGAAACGAGCATGCGGGGGTTCAGCCGACCGGAGAGGTAGAATGCACAAGCAAGGGATCGAC
CCGGTCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGTTCGATCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCG
TACGGGTGCTCAACCAATCGGAGAGGCATAATGAACAAGTCCGGGATCAGCCCGATCCCCCTCTA
CGTGCTACTGATCCCGCTGTCAGTCCT
Found at i:29852137 original size:26 final size:26
Alignment explanation
Indices: 29852108--29852158 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29852098 CGATTCGATC
*
29852108 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
29852134 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
29852159 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:29852539 original size:26 final size:26
Alignment explanation
Indices: 29852488--29852540 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29852478 CCGATCTGAT
* *
29852488 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACACCATATG
*
29852514 CTTAGACAT-GGAATCAACACCGTATG
1 CTTAGAC-TGGGAATCAACACCATATG
29852540 C
1 C
29852541 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACACCATATG
Found at i:29852786 original size:196 final size:196
Alignment explanation
Indices: 29852316--29852835 Score: 640
Period size: 196 Copynumber: 2.6 Consensus size: 196
29852306 TCTGACTGGG
* *
29852316 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
** * * * **
29852380 ACCGGGTGGAGAGGCAGAATGCGCAAGCC-AGGTATCGACCCGATCCACCCCTACGTGCTGCCAA
66 A-CGACTGGAGAGGCAGAATACACAAGCCGAGG-ATCGACCCGATCC-CCCCTGCGTGCTATCAA
* * * *
29852444 TCCTTCTGCTGGTCTTGCTATCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCC
128 TCCTACTGCTAGTCCTGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCC
29852509 ATAT
193 ATAT
* *
29852513 GCTTAGACATGGAATCAAC-ACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
1 GCTTAGACATGGAATGAACTACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * * *
29852577 ACCAGCCGGAGAGGTAGAATCCACATGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTATCGATC
66 ACGA-CTGGAGAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCAATC
* *
29852642 CTACTGCTAGTCCTGCT-TGCCGTAA-CCTCGAT-CTATCT-ATCTTAGATTGGGAATGAAACTC
130 CTACTGCTAGTCCTGCTAT--CGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATG-AACTC
*
29852703 CTTAT
192 CATAT
* * *
29852708 GCTTAGACATGAAATGAACTACCGTATGCCTAAGCCAACCCACGAATCGAACATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * *
29852773 ATCGACTGGAGAGGCAGAATACACAAGTCGGGGATCGACCCGATCCCTCCTGCGTGCTATCAA
66 A-CGACTGGAGAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCAA
29852836 ATCTGCTGCC
Statistics
Matches: 276, Mismatches: 39, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
194 16 0.06
195 32 0.12
196 128 0.46
197 97 0.35
198 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
ACGACTGGAGAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCAATCC
TACTGCTAGTCCTGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATA
T
Found at i:29853066 original size:159 final size:158
Alignment explanation
Indices: 29852708--29853066 Score: 370
Period size: 158 Copynumber: 2.3 Consensus size: 158
29852698 AACTCCTTAT
* * *
29852708 GCTTAGACATGAAATGAACTACCGTATGCCTAAGCCAACCCACGAATCGAACATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACAAATCGAACATGCGGGCGCTCA
* ** * *
29852773 ATCGACTGGAGAGGCAGAATACACAAGTCGGGGATCGACCCGATCCCTCCTGCGTGCTATCAAAT
65 ACCGACCAGAGAGGCAGAATACACAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTAGCAAAT
* * *
29852838 CTGCTGCCGCAACCCTCGGTCCGGTCTGA
130 CTGCTGCCACAACCCTCGATCCGGACTGA
* * * ** * * *
29852867 TCATAAAC-TAGGAATGAACTCTGTATGCCTAATTCAACCCACAAAAT-GAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCAC-AAATCGAACATGCGGGCGCTC
* * * * *
29852930 AGCC-AGCCAGAGAGGCATAATACGCCAGTCGGGGATC-AGCCCGATCCCCCTCTGTGTGCT-GC
64 AACCGA-CCAGAGAGGCAGAATACACAAGTCGGGGATCGA-CCCGATCCCCC-CTGCGTGCTAGC
* *
29852992 CAGTCTCGCTGCCACAACCCTCGATCC-GACTGA
126 AAATCT-GCTGCCACAACCCTCGATCCGGACTGA
29853025 GGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 -GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
29853067 TGAAACGGGC
Statistics
Matches: 161, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 81 0.50
159 77 0.48
160 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAATCGAACATGCGGGCGCTCAA
CCGACCAGAGAGGCAGAATACACAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTAGCAAATC
TGCTGCCACAACCCTCGATCCGGACTGA
Found at i:29853082 original size:159 final size:158
Alignment explanation
Indices: 29852708--29853088 Score: 385
Period size: 159 Copynumber: 2.4 Consensus size: 158
29852698 AACTCCTTAT
* * * *
29852708 GCTTAGACATGAAATGAACTACCGTATGCCTAAGCCAACCCACGAATCGAACATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* ** * *
29852773 ATCGACTGGAGAGGCAGAATACACAAGTCGGGGATCGACCCGATCCCTCCTGCGTGCTATCAAAT
65 ACCGACCAGAGAGGCAGAATACACAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTAGCAAAT
* * *
29852838 CTGCTGCCGCAACCCTCGGTCCGGTCTGA
130 CTGCTGCCACAACCCTCGATCCGGACTGA
* * * ** * * * *
29852867 TCATAAAC-TAGGAATGAACTCTGTATGCCTAATTCAACCCACAAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * *
29852931 GCC-AGCCAGAGAGGCATAATACGCCAGTCGGGGATC-AGCCCGATCCCCCTCTGTGTGCT-GCC
65 ACCGA-CCAGAGAGGCAGAATACACAAGTCGGGGATCGA-CCCGATCCCCC-CTGCGTGCTAGCA
*
29852993 AGTCTCGCTGCCACAACCCTCGATCC-GACTGA
127 AATCT-GCTGCCACAACCCTCGATCCGGACTGA
* * *
29853025 GGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTC
1 -GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
29853089 GGTTGGTCGG
Statistics
Matches: 175, Mismatches: 40, Indels: 14
0.76 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 83 0.47
159 89 0.51
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
CCGACCAGAGAGGCAGAATACACAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTAGCAAATC
TGCTGCCACAACCCTCGATCCGGACTGA
Found at i:29853203 original size:26 final size:26
Alignment explanation
Indices: 29853174--29853227 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
29853164 GATCCAATCT
*
29853174 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
29853200 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
29853226 TA
1 TA
29853228 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:29854256 original size:26 final size:26
Alignment explanation
Indices: 29854227--29854279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29854217 CTGATCTGAT
29854227 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
29854253 CTTAGACTGGGGATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29854279 C
1 C
29854280 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29854568 original size:196 final size:196
Alignment explanation
Indices: 29854221--29854581 Score: 487
Period size: 196 Copynumber: 1.8 Consensus size: 196
29854211 CTTGGTCTGA
** * ** **
29854221 TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTTTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAACC
* *
29854286 CAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGTGAT
66 CAACCCACGAAACGAGCATACGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGTGAC
*
29854351 CGACTCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCAGTCCG
131 CGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCAGTCCG
29854416 G
196 G
* *
29854417 TCTGATCTTAGGCTGGGAATGAACTCCATATGCTTAGACAT-GTAATGAACTCCGTATGCCTAAC
1 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAC
* * * * *
29854481 CCAACCCACGAAACGAGCTTACGGGTGCTCAGCCGATCGGAGAGAG-AGAATGCATAAG-CTGG-
65 CCAACCCACGAAACGAGCATACGGGCGCTCAACCGACCGGAGAG-GCAGAATGCACAAGTC-GGT
* *
29854543 GACCGGCCCGATCACCCCTTACGTGCTGTCGATCCTGCT
128 GACCGACCCGATC-CCCCCTACGTGCTGTCGATCCTGCT
29854582 ACCACAACCC
Statistics
Matches: 142, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
195 11 0.08
196 129 0.91
197 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (196 bp):
TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAACC
CAACCCACGAAACGAGCATACGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCGGTGAC
CGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCAGTCCG
G
Found at i:29855042 original size:317 final size:317
Alignment explanation
Indices: 29854448--29855074 Score: 696
Period size: 317 Copynumber: 2.0 Consensus size: 317
29854438 AACTCCATAT
* * * * *
29854448 GCTTAGACATGTAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCTTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACCAAACGAGCATACGGGCGCTCAG
*
29854513 CCGATCGGAGAGAGAGAATGCATAAGCTGGGACCGGCCCGATCACCCCTTACGTGCTGTCGATCC
66 CCGATCGGAGAGAGAGAATGCACAAGCTGGGACCGGCCCGATCACCCCTTACGTGCTGTCGATCC
* * * *
29854578 TGCTACCACAACCCTAGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTCTGCCTAAGTCAA
131 TGCTACCACAACCCTAGATCCAGTCCGATCTTACACTGGGAATGAACTCCATATGCCTAAGTCAA
* * * *
29854643 CCCACGAAAAGAGCGTAAGGGTACCGAGCCAGTCGGAGAGGCATAATGTGCAAGCCGAGGATCGA
196 CCCACGAAAAGAGCGTAAGAGCACCGAGCCAGTCGAAGAGGCATAATGTGCAAGCAGAGGATCGA
*
29854708 CCTGATCCTCCTCTGCATGCTGCCGAACCCGCTGCCACAACCCTCAGTCCGGCTGGG
261 CCAGATCCTCCTCTGCATGCTGCCGAACCCGCTGCCACAACCCTCAGTCCGGCTGGG
* * ** * *
29854765 GCTTAGACCTGGAATGAACTCCCTCTGCCTAAGTCAACCCACCAAACGGGCATGCGGGCGCTC-G
1 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACCAAACGAGCATACGGGCGCTCAG
* * * * *
29854829 ACCGATCGGAGAG-GCAGAATGCGCAAGCTGCGGATCGGCCTGGTC-CATCCTT-CGTGCTGTCG
66 -CCGATCGGAGAGAG-AGAATGCACAAGCTG-GGACCGGCCCGATCAC-CCCTTACGTGCTGTCG
* ** * * * *
29854891 ATCCTGCTATCGTAACCCTCA-ATCCAGTTCGATCTTAGACTGGGAATGAACTCTATATGCTTAA
127 ATCCTGCTACCACAACCCT-AGATCCAGTCCGATCTTACACTGGGAATGAACTCCATATGCCTAA
* * * ** * * *
29854955 GTCAACCCATGAAACGAGTGTGCGAGCACTGAGTCAGTTGAAGAGGCATAATGCT-CAAGCTAG-
191 GTCAACCCACGAAAAGAGCGTAAGAGCACCGAGCCAGTCGAAGAGGCATAATG-TGCAAGC-AGA
* * * * *
29855018 GGATTGGCCCAG-TCC-CCTTCTGCATGCTGTCGATCCCGCTGCCACAACCCTCGGTCC
254 GGA-TCGACCAGATCCTCC-TCTGCATGCTGCCGAACCCGCTGCCACAACCCTCAGTCC
29855075 AGCTCAGCCG
Statistics
Matches: 255, Mismatches: 46, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
316 4 0.02
317 228 0.89
318 23 0.09
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACCAAACGAGCATACGGGCGCTCAG
CCGATCGGAGAGAGAGAATGCACAAGCTGGGACCGGCCCGATCACCCCTTACGTGCTGTCGATCC
TGCTACCACAACCCTAGATCCAGTCCGATCTTACACTGGGAATGAACTCCATATGCCTAAGTCAA
CCCACGAAAAGAGCGTAAGAGCACCGAGCCAGTCGAAGAGGCATAATGTGCAAGCAGAGGATCGA
CCAGATCCTCCTCTGCATGCTGCCGAACCCGCTGCCACAACCCTCAGTCCGGCTGGG
Found at i:29858149 original size:23 final size:23
Alignment explanation
Indices: 29858119--29858166 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
29858109 AGAGTTAGTT
29858119 GATGCTGGCTTCATCAAGCCATC
1 GATGCTGGCTTCATCAAGCCATC
29858142 GATGCTGGCTTCATCAAGCCATC
1 GATGCTGGCTTCATCAAGCCATC
29858165 GA
1 GA
29858167 AGGTACCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (23 bp):
GATGCTGGCTTCATCAAGCCATC
Found at i:29862146 original size:158 final size:156
Alignment explanation
Indices: 29861646--29862138 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 156
29861636 ACACCGTATG
* * * * * *
29861646 CTTAGAC-ATGGAATCAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTACGGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
29861710 TCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATC-AGCTCGATCCCCCATGCGTGCTGTCGATC
65 CCGGCCAAAGAAGCAGAATGCGCAAG-TAGGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATC
*
29861774 CTGCTATCACAACCCTCGGTCCTGTCCGAT
128 CTGCTATCACAACCCTCGGTCC-GTCTGAT
* * * *
29861804 CTTAGACT-GAAAATGAACTCCGTATGCATATGTCAACCCATGAAACGAGCGTACGGGCGCTGAG
1 CTTAGACTAG-GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
29861868 CCGGCCAAAGAGGCATAATGCGCAAGTCGGGATCGACCTGATCCCCTTCTGCATGCTGTCGGTCC
65 CCGGCCAAAGAAGCAGAATGCGCAAGTAGGGATCGACCCGATCCCC-CCTGCGTGCTGTCGATCC
* * **
29861933 TGCTACCACAACCCTCGGTCCGACTGGGG
129 TGCTATCACAACCCTCGGTCCGTCT-GAT
* * *
29861962 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGACGTGCGGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAG-CGTACGGGCGCTCA
* * * * * * * *
29862025 GCCTGTCGAAGAAGTAGAATGTGCAAGCTAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATC
64 GCCGGCCAAAGAAGCAGAATGCGCAAG-TAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* * *
29862090 CTGCTGTCACAACCCTCAGTCAGGTCTGAT
128 CTGCTATCACAACCCTCGGTC-CGTCTGAT
29862120 CTTAGACTAGGAATGAACT
1 CTTAGACTAGGAATGAACT
29862139 TTGTATGCTT
Statistics
Matches: 268, Mismatches: 56, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 18 0.07
158 228 0.85
159 22 0.08
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGGCCAAAGAAGCAGAATGCGCAAGTAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTATCACAACCCTCGGTCCGTCTGAT
Found at i:29862170 original size:26 final size:26
Alignment explanation
Indices: 29862120--29862172 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29862110 CAGGTCTGAT
**
29862120 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
29862146 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29862172 C
1 C
29862173 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29862935 original size:158 final size:158
Alignment explanation
Indices: 29862330--29862972 Score: 420
Period size: 158 Copynumber: 4.1 Consensus size: 158
29862320 CCGGTTGGGG
* * * ** *
29862330 CTTAGACATGGAATGAACTCTGTATGCCCAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAAT
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* ** * * * * * ** *
29862395 CGATCGGAGAGGCAGAATACGCAAGCC-GTGAATCGGCTCGAT-CCCCCTATGTACTGTCGATCT
66 CGATCGGAGAGGCAAAATGTGCAAGCCAG-GGATCGACCCGATCCCCCCTACGTGCTACCGATCC
* * * * * *
29862458 TACTGCTGCAACCTTCAGTCCGATCCGAT
130 CACTACCGTAACCCTCGGTCCGATCCGAT
* * * * *** *
29862487 CTTAGA-TTGAGAATGAACTC-CGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGTGTTGA
1 CTTAGACATG-GAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
** * * * * * * *
29862550 GTC-AGCTGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGAT--CCCCTAC-TGCGTGCTG-
64 ACCGATC-GGAGAGGCAAAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGC-TACCGA
** * * * * **
29862610 TTGC-C-A-C--AACCCTCGATCTG-GCTAGGG
127 TCCCACTACCGTAACCCTCGGTCCGATC-CGAT
* *
29862637 CTTAGACATGGAATGATCTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * **
29862702 CGATCGGAGAGGGAAAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCC
66 CGATCGGAGAGGCAAAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCC
* * *
29862767 ATTACCGTAACCCTTGGTTCGATCCGAT
131 ACTACCGTAACCCTCGGTCCGATCCGAT
* * * *
29862795 CTTAGACATGGAATGAACTGC-CTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAG
1 CTTAGACATGGAATGAACT-CTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * **
29862859 CCGGTCGGAGAGGCAGAATGTGCAAGTCAGGGATTGGTCCGATCCCCCCTACGTGCTACCGATCC
65 CCGATCGGAGAGGCAAAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
** *** * *
29862924 TGCTGTTGTAACCCTCGGTCCGGTCTGAT
130 CACTACCGTAACCCTCGGTCCGATCCGAT
29862953 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
29862973 CATTTGCTTA
Statistics
Matches: 373, Mismatches: 92, Indels: 42
0.74 0.18 0.08
Matches are distributed among these distances:
149 1 0.00
150 93 0.25
151 4 0.01
152 9 0.02
153 5 0.01
154 1 0.00
155 4 0.01
156 14 0.04
157 83 0.22
158 157 0.42
159 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CGATCGGAGAGGCAAAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCC
ACTACCGTAACCCTCGGTCCGATCCGAT
Found at i:29863688 original size:26 final size:26
Alignment explanation
Indices: 29863647--29863699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29863637 GGCTCAAAAT
29863647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29863673 CTTAGACATGGG-ATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29863699 C
1 C
29863700 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29864019 original size:26 final size:26
Alignment explanation
Indices: 29863990--29864042 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29863980 TCGATCCGAT
*
29863990 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29864016 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29864042 C
1 C
29864043 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29864703 original size:158 final size:157
Alignment explanation
Indices: 29864226--29864705 Score: 466
Period size: 158 Copynumber: 3.0 Consensus size: 157
29864216 ACTCCATATG
* * * ** * * * * *
29864226 CTTAGACAAGGTATGAACTCCATATGCCTAAGGCAACCCATGAAACGAGCGTACGGGCACCCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGT
* * * * **
29864291 CGACCGAAGAGGTAGAATGCGTAAG-TCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGGT-CCCCCTGCGTGCTGTCGATCC
* * *
29864355 TGCTACCATAACCCTCTGTCCGGTCCGAT
129 TGCTACCACAACCCTCGGTCCGGTCCAAT
* * * * * ** *
29864384 CTTAGAC-TGGATTGAACTCCGTACGACTAAGCCAACCCACAAAATGGGCGTGTGGATGCTGAG-
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGT
* * * *
29864447 CTGACCAAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTTGCGTGCTGCCGGTCC
66 C-GACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCC-TGCGTGCTGTCGATCC
* *
29864512 TGCTGCCACAACCCTCGGTCCGG--CAAGGG
129 TGCTACCACAACCCTCGGTCCGGTCCAA--T
* * *
29864541 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACAAAATGGGGGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGT
* * * * *
29864606 CGGCTGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCCGGTCCCTCCTGCGTGCTGTCGATCTT
66 CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCC-CCTGCGTGCTGTCGATCCT
* * *
29864671 GCTATCGCAACCATCGGTCCGGTCCAAT
130 GCTACCACAACCCTCGGTCCGGTCCAAT
29864699 CTTAGAC
1 CTTAGAC
29864706 TGGGAATAAA
Statistics
Matches: 255, Mismatches: 57, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
155 2 0.01
156 6 0.02
157 110 0.43
158 131 0.51
159 3 0.01
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGT
CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCGGTCCGGTCCAAT
Found at i:29865481 original size:26 final size:26
Alignment explanation
Indices: 29865452--29865504 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
29865442 GGCTCAAAAT
29865452 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29865478 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29865504 C
1 C
29865505 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29866519 original size:26 final size:27
Alignment explanation
Indices: 29866481--29866535 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
29866471 GTTTGATCAT
29866481 AGACTGGGAATGAACTCTGTATG-CTA
1 AGACTGGGAATGAACTCTGTATGCCTA
*
29866507 AGACTGGGGATGAACTCTGTATGCCTA
1 AGACTGGGAATGAACTCTGTATGCCTA
29866534 AG
1 AG
29866536 TCAACCCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (27 bp):
AGACTGGGAATGAACTCTGTATGCCTA
Found at i:29867236 original size:26 final size:26
Alignment explanation
Indices: 29867198--29867250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29867188 GGCTTAAAAT
*
29867198 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29867224 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
29867250 C
1 C
29867251 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29868442 original size:316 final size:315
Alignment explanation
Indices: 29867854--29868463 Score: 889
Period size: 316 Copynumber: 1.9 Consensus size: 315
29867844 AGAACCCTCA
*
29867854 GTCCCCCCTCTGTACTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
1 GTCCCCCCTCTGTACTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGA
* * * * **
29867919 ATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCATACGGGCACTGAGTCGGTCGAAGAGG
66 ATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCATACGGGCACTGAGCCAATCGAAGAGG
** * ** *
29867984 CATAATGTGCAACCTGGGATCGACCCGGTCCCCATCTGGGTGCTACCGGTCCCGCTGCCACAACC
131 CATAATCCGCAACCGGGGATCGACCCGGTCCCCATCTACGTGCTACCGATCCCGCTGCCACAACC
* ** *
29868049 CTCTGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAG
196 CTCGGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
* * *
29868114 CGTACAGGCACTCAGCTGGCCGGAGAGGCAGAATCGCAAGCCGGGGATCGGCCTG
261 CGTACAGGCACTCAGCCGACAGGAGAGGCAGAATCGCAAGCCGGGGATCGGCCTG
* *
29868169 GTCCCCCCTGC-GTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGG
1 GTCCCCCCT-CTGTACTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGG
* * * **
29868233 AATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTGAGCCAATCGAAGAG
65 AATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCATACGGGCACTGAGCCAATCGAAGAG
* * *
29868298 GCATAATCCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTACTGATCCCGCTGCCACAA
130 GCATAATCCGCAA-CCGGGGATCGACCCGGTCCCCATCTACGTGCTACCGATCCCGCTGCCACAA
* *
29868363 CCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTTTGCCTAAGCCAACCCACGAAACG
194 CCCTCGGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* *
29868428 AGCGTTCGGGCACTCAGCCGACAGGAGAGGCAGAAT
259 AGCGTACAGGCACTCAGCCGACAGGAGAGGCAGAAT
29868464 ACGTGCTGTC
Statistics
Matches: 259, Mismatches: 34, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
315 124 0.48
316 135 0.52
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (315 bp):
GTCCCCCCTCTGTACTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGA
ATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCATACGGGCACTGAGCCAATCGAAGAGG
CATAATCCGCAACCGGGGATCGACCCGGTCCCCATCTACGTGCTACCGATCCCGCTGCCACAACC
CTCGGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
CGTACAGGCACTCAGCCGACAGGAGAGGCAGAATCGCAAGCCGGGGATCGGCCTG
Found at i:29868538 original size:26 final size:26
Alignment explanation
Indices: 29868508--29868560 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29868498 CCGGTCCCAT
*
29868508 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29868534 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29868560 C
1 C
29868561 CTAAGTCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29868917 original size:26 final size:26
Alignment explanation
Indices: 29868888--29868940 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29868878 CCGATCTGAT
* *
29868888 CTTAGAC-TAGGAATGAAGTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29868914 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29868940 C
1 C
29868941 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29869413 original size:26 final size:26
Alignment explanation
Indices: 29869384--29869436 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29869374 CTGATCCGAT
29869384 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTAGGGA-TGAACTCCGTATG
29869410 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
29869436 C
1 C
29869437 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:29869754 original size:863 final size:845
Alignment explanation
Indices: 29868465--29870313 Score: 2081
Period size: 863 Copynumber: 2.2 Consensus size: 845
29868455 AGGCAGAATA
* *
29868465 CGTGCTGTCGATCCTGCTACCTCAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAAGTCCG
1 CGTGCTGTCGATCCTGCTACCTCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
29868530 TATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCTACCCATGAAACTAGTGTACGGGTGCT
66 TATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCAT-AAA--A-TG-A-GCGTGCT
* * * * ** * *
29868595 CAACCGGCCAGAGAGGCCAGTCGGAGAGGCATAATGCGCAAGTCAGGGATTAGCCCGGTCCCCCT
124 --A---G-CACACAGGCCAGCCGAAGAGGCATAATGCGCAACCCAGGGATCAACCCGGTCCCCCT
* * *
29868660 CTACGTGCTGCCGATCTCGCTTCCGATCCTACTACCACAACCCTCGGTCTGGCTGAGGCTTAGAC
183 CTACGTGCTACCGATCTCGCTTCCGATCCTACTACCACAACCCTCGGTCTGACTGAGGCTTACAC
* * *
29868725 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGAGGGTGCTCAGCCGGCCGG
248 ATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGAGGGCGCTCAGCCGACCGG
* * *
29868790 AGAGGTAGAATGCACAAGCCAGGGATCGACTCGGTCCCGCCTGCGTGCTCCCGATCCTACTGCTG
313 AGAGGTAGAATGCACAAGCCAGGGATCGACCCGGTCCCGCCTGCATGCTCCCGATCCTACTGCTA
* * * * *
29868855 GTCCTGCTATCAAAACCCTTGGTCCGATCTGATCTTAGACTAGGAATGAAGTCTGTATGCTTAGA
378 GTCCTACTATCAAAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* * * * *
29868920 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGCCGACCG
443 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCCCAACCGACAG
**
29868985 GAAAGGCAAAATGTGCAAGTCGA-GGATCGACCCAGTCCCCCCCTGCGTGCTATCGATCCTACTA
508 GAAAGGCAAAATGCACAAG-CGAGGGATCGACCCAGT-CCCCCCTGCGTGCTATCGATCCTACTA
* * * *
29869049 TCGTAACCCTCGGTTCGA-TCCGATCTTAGACTGGGAATGATCTCTGTATGCCTAAGTCAACCCA
571 TCGAAACCCTCAG-TCGAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCA
** * **
29869113 TGAAATGAGTGTGCGGGAGCCTGCTGGCGAGGCATAATGCACAAGCCAAGTATCGGC-T-CGGTC
635 CAAAATGAGTGTAC-GG-G-C-G-T--CGA-GC---ATGC-C-AG---AG-A--GGCATAATG-C
* * *
29869176 CCCCTCTGCATGCTGTCGGTCCCGCTACCACAACCCTTAGTCCGGCT-GGGCATAGACATGGAAT
680 CCCCTCTACATGCTGTCGGTCCCGCTACCACAACCCTCAATCCGGCTGGGGCATAGACATGGAAT
* *
29869240 GAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCAACCGGAGAGGTA
745 GAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCAACCGAAGAGGCA
* * *
29869305 GAATGCGCAAGCCAGGGATCGACTTGGTCCCCCCTG
810 GAATGCGCAAGCCAGGGACCGACTCGATCCCCCCTG
* * * * *
29869341 CGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGACTGAACTCCG
1 CGTGCTGTCGATCCTGCTACCTCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
*
29869406 TATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCTAGCACT
66 TATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCTAGCACA
* * * * **
29869471 CA-GCC-GACCGAAGAGGCATAATGTGCCACCCGGGGATCAACCCGGTCCCCTTCTGTGTGCTAC
130 CAGGCCAG-CCGAAGAGGCATAATGCGCAACCCAGGGATCAACCCGGTCCCCCTCTACGTGCTAC
*
29869534 CGATC-CAG-TTACCGATCCTACTACCACAACCCTCGGT-TCGACTGGGGCTTACACATGGAATA
194 CGATCTC-GCTT-CCGATCCTACTACCACAACCCTCGGTCT-GACTGAGGCTTACACATGGAATA
* * * *
29869596 AACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCA-GGCGCTCAATCC-ACCGGAGAGGT
256 AACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTG-AGGGCGCTC-AGCCGACCGGAGAGGT
* * ** * *
29869659 AGAATGCGCAAGCC-GAGGATCGGCCCGGTCCAC-CCTGCATGCTGTCGATCTTGCTGCTAGTCC
319 AGAATGCACAAGCCAG-GGATCGACCCGGTCC-CGCCTGCATGCTCCCGATCCTACTGCTAGTCC
* ** ** * * *
29869722 TACT-GCTTTAACCCTCGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT
382 TACTATC-AAAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT
* * * ** *
29869786 GGAATGAACTCTGTATGCCTAAGCCAACCCGCAAAACGAGCATGCGGGCGCCCAACCGGTAGGAG
446 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCCCAACCGACAGGAA
* * * * * * *
29869851 AGGCAAAATGCATAAGCTAGGGATTGACCCGGTCTCCCCTGCGTGCTGTCGATCCTGCTATCGAA
511 AGGCAAAATGCACAAGCGAGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTACTATCGAA
* * *
29869916 ACCTTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCACAAAAT
576 ACCCTCAGTCGAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCACAAAAT
* * * *
29869981 GAGTGTACGGGCGTTGAGCCTGCCAGAGAGGCATAATGCGCCCTCTACCTGCTGTCGGTCCCGCT
641 GAGTGTACGGGCGTCGAGCATGCCAGAGAGGCATAATGCCCCCTCTACATGCTGTCGGTCCCGCT
* * **
29870046 GCCACAACCCTCAATCCGGTTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
706 ACCACAACCCTCAATCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * *
29870111 CGAAACGGGTGTGCGGGGGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACTCG
771 CAAAACGGGCGTGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACTCG
*
29870176 ATCCCCCTTG
836 ATCCCCCCTG
* * * *
29870186 CGTGCTGTCGATCCTGCTGCCTTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGCACTCCG
1 CGTGCTGTCGATCCTGCTACCTCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *
29870251 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGAGCA
66 TATGCTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCTAGCA
29870314 TTGAGCCGGC
Statistics
Matches: 831, Mismatches: 127, Indels: 61
0.82 0.12 0.06
Matches are distributed among these distances:
843 3 0.00
844 45 0.05
845 217 0.26
846 2 0.00
849 2 0.00
850 1 0.00
851 3 0.00
854 2 0.00
855 2 0.00
857 1 0.00
858 1 0.00
859 1 0.00
860 1 0.00
861 5 0.01
862 97 0.12
863 325 0.39
864 8 0.01
865 1 0.00
868 1 0.00
870 6 0.01
871 1 0.00
872 2 0.00
873 1 0.00
875 3 0.00
876 100 0.12
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (845 bp):
CGTGCTGTCGATCCTGCTACCTCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCTAGCACAC
AGGCCAGCCGAAGAGGCATAATGCGCAACCCAGGGATCAACCCGGTCCCCCTCTACGTGCTACCG
ATCTCGCTTCCGATCCTACTACCACAACCCTCGGTCTGACTGAGGCTTACACATGGAATAAACTC
CGTATGCCTAAGCCAACCCACAAAACAAGCGTGAGGGCGCTCAGCCGACCGGAGAGGTAGAATGC
ACAAGCCAGGGATCGACCCGGTCCCGCCTGCATGCTCCCGATCCTACTGCTAGTCCTACTATCAA
AACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCCCAACCGACAGGAAAGGCAAAATG
CACAAGCGAGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTACTATCGAAACCCTCAGTC
GAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCACAAAATGAGTGTACGG
GCGTCGAGCATGCCAGAGAGGCATAATGCCCCCTCTACATGCTGTCGGTCCCGCTACCACAACCC
TCAATCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGC
GTGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACTCGATCCCCCCTG
Found at i:29870258 original size:26 final size:26
Alignment explanation
Indices: 29870229--29870281 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29870219 CCGGTCTGAT
*
29870229 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29870255 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29870281 C
1 C
29870282 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29870584 original size:158 final size:154
Alignment explanation
Indices: 29870340--29870882 Score: 462
Period size: 158 Copynumber: 3.4 Consensus size: 154
29870330 CAACACTACC
* * * * ** *
29870340 TGCTGTCGATCTTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGTCGATCCTACTGCCACAACCCTC-GTCCGTCT-GATCTTAGACATGGAATGAACTCCGTA
* ** * *
29870405 TGCCTAAGCCAACCCACGAAATGAGCTTGTGGGCGCTTAGCCGATCGGAGAGGCAGAATGTGCAA
64 TGCCTAAGCCAACCCA-GAAATGAGCATACGGGCGCTCAGCCGA-CGAAGAGGCAGAATGTGCAA
** *
29870470 GCCAAGGATCGGCCCGATCCCCCCTACG
127 GCCGGGGATCGGCCCGATCCCCCCTGCG
*
29870498 TGCTGTCGATCCTACCGCCACAACCCTCAGTCCAGTCTGATCTTAGAC-TGGGAATGAACTCCGT
1 TGCTGTCGATCCTACTGCCACAACCCTC-GTCC-GTCTGATCTTAGACAT-GGAATGAACTCCGT
* * * * * * * * *
29870562 ATGCCTATGTCAACCCATGAAATGAGCGTACGGGTGCTGATCCGGACGAAGAGACATAATGCGCA
63 ATGCCTAAGCCAACCCA-GAAATGAGCATACGGGCGCTCAGCC-GACGAAGAGGCAGAATGTGCA
* *
29870627 AGACGGGGATCGGCCCGGTCCCCCTCTGCG
126 AGCCGGGGATCGGCCCGATCCCCC-CTGCG
* * * * * * *
29870657 TGCTGCCGGTCCCACTGCCACAACACTCGATCCGACTAGGGT-TTAGACATGGAATGAACTCCTT
1 TGCTGTCGATCCTACTGCCACAACCCTCG-TCCGTCT--GATCTTAGACATGGAATGAACTCCGT
* * * * *
29870721 ATGCCTAAGCCAATCCGAGAAACGGGCATACGGGCACTCAGCCGACCGAAGAGGTAGAATGTGCA
63 ATGCCTAAGCCAA-CCCAGAAATGAGCATACGGGCGCTCAGCCGA-CGAAGAGGCAGAATGTGCA
* ** *
29870786 AGCTGGGGATCGGCTTGATCCCCCTTGCG
126 AGCCGGGGATCGGCCCGATCCCCCCTGCG
* * * * * *
29870815 TACTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC-TGGGAAGGAACTCCGT
1 TGCTGTCGATCCTACTGCCACAACCCTC-GTC-CGTCTGATCTTAGACAT-GGAATGAACTCCGT
29870879 ATGC
63 ATGC
29870883 TTAGACTGGC
Statistics
Matches: 303, Mismatches: 68, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 172 0.57
159 121 0.40
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (154 bp):
TGCTGTCGATCCTACTGCCACAACCCTCGTCCGTCTGATCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCAGAAATGAGCATACGGGCGCTCAGCCGACGAAGAGGCAGAATGTGCAAGCCG
GGGATCGGCCCGATCCCCCCTGCG
Found at i:29870794 original size:159 final size:155
Alignment explanation
Indices: 29870354--29870809 Score: 407
Period size: 159 Copynumber: 2.9 Consensus size: 155
29870344 GTCGATCTTG
* * * *
29870354 CTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGACT-GGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * * **
29870419 CACGAAATGAGCTTGTGGGCGCTTAGCCGATCGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCC
65 CACGAAATGAGCATACGGGCGCTCAGCCGA-CGAAGAGGCAGAATGTGCAAG-CGGGGATCGGCC
* *
29870484 CGATCCCCCCTACGTGCTGTCGATCCTA
128 CGATCCCCCCTACGTGCTGCCGATCCCA
* * * * * *
29870512 CCGCCACAACCCTC-AGTCCAGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTATGTCA
1 CTGCCACAACCCTCGA-TCC-GACTGGGT-TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * *
29870574 ACCCATGAAATGAGCGTACGGGTGCTGATCCGGACGAAGAGACATAATGCGCAAGACGGGGATCG
62 ACCCACGAAATGAGCATACGGGCGCTCAGCC-GACGAAGAGGCAGAATGTGCAAG-CGGGGATCG
* * *
29870639 GCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCA
125 GCCCGATCCCCC-CTACGTGCTGCCGATCCCA
* *
29870671 CTGCCACAACACTCGATCCGACTAGGGTTTAGACATGGAATGAACTCCTTATGCCTAAGCCAATC
1 CTGCCACAACCCTCGATCCGACT-GGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-C
* * * * *
29870736 CGA-GAAACGGGCATACGGGCACTCAGCCGACCGAAGAGGTAGAATGTGCAAGCTGGGGATCGGC
64 CCACGAAATGAGCATACGGGCGCTCAGCCGA-CGAAGAGGCAGAATGTGCAAGC-GGGGATCGGC
**
29870800 TTGATCCCCC
127 CCGATCCCCC
29870810 TTGCGTACTG
Statistics
Matches: 235, Mismatches: 50, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
157 2 0.01
158 109 0.46
159 117 0.50
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
CTGCCACAACCCTCGATCCGACTGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAATGAGCATACGGGCGCTCAGCCGACGAAGAGGCAGAATGTGCAAGCGGGGATCGGCCCGA
TCCCCCCTACGTGCTGCCGATCCCA
Found at i:29870899 original size:26 final size:26
Alignment explanation
Indices: 29870856--29870908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29870846 CTGGTCTGAT
29870856 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
29870882 CTTAGACTGGCG-ATGAACTCTGTATG
1 CTTAGACTGG-GAAGGAACTCCGTATG
29870908 C
1 C
29870909 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:29871618 original size:26 final size:26
Alignment explanation
Indices: 29871569--29871619 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
29871559 GATCCGATCC
*
29871569 TAGACTGGGAATAAACTCTATATGCT
1 TAGACTGGGAATAAACTCCATATGCT
* * *
29871595 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATAAACTCCATATGC
29871620 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCATATGCT
Found at i:29871671 original size:343 final size:344
Alignment explanation
Indices: 29870539--29872070 Score: 1331
Period size: 343 Copynumber: 4.4 Consensus size: 344
29870529 CCAGTCTGAT
* * * * * * * *
29870539 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGTACGGGTGCTGATC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
29870604 CGGA-CGAAGAGACATAATGCGCAAGACGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTC
66 CGGACCGAAGAGGCATAATGCGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCTGTC
* * * * *
29870668 CCACTGCCACAACACTCGATCCGACTAGGGTTTAGACATGGAATGAACTCCTTATGCCTAAGCCA
131 CCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
29870733 ATCCGA-GAAACGGGCATACGGGCACTCAGCCGACCGAAGAGGTAGAATGTGCAAG-CTGGGGAT
196 A-CCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTC-GGGGAT
* * * *
29870796 CGGCTTGATCCCCCTTGCGTACTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAG
259 CGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAG
* *
29870861 ACTGGGAAGGAACTCCGTATG
324 ACTGGGAATGAACTCTGTATG
* * *
29870882 CTTAGACTGGCGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* **
29870947 CAGTTGGAGAGGCCAGATGGAGAGGCATAATGCGTAA-GCGGAGGATC-AGCCCGGTCCTTCTCT
66 C-----G-GA--CC-GA---AGAGGCATAATGCGCAAGGCGG-GGATCGA-CCCGGTCCCCCTCT
* *
29871010 GCGTGCTGTCGATCCCGCTGTCGTTCCTACTACCACAACCCTCGGTCC-AGCTGGGGTTTAGACA
117 GCGTGC--T-G----C-CTGTC---CC-ACTACCACAACCCTCGATCCGA-CTGGGGCTTAGACA
* * * *
29871074 TGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGCGCTCAACCGGCAGGA
169 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGA
* *
29871139 GAGGTAGAATGCGCAAGTCGAGGATCGGC-CTGGTCCCCCCTGCGTGGTGTCGATCCTGCTACCG
234 GAGGTAGAATGCGCAAGTCGGGGATCGGCTC-GGTCCCCCCTGCGTGCTGTCGATCCTGCTACCG
* * * *
29871203 TAACCCTTGGTTTGGTCTGATCTTAGATTGGGAATGAACT-TCGTATG
298 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATG
** * * * * *
29871250 CTTAGACTAAGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
29871315 C-GACCGAAGAGGCATAATGCGCAAGGTGGGGATCGACCCGGTCCCCCTCTTCGTGCTGCCTGTC
66 CGGACCGAAGAGGCATAATGCGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCTGTC
* * * * *
29871379 CCATTGCCACAACCCTTGATCTGACTGCGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
131 CCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * **
29871444 ACCCATGAAACGGGCGCGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCG
196 ACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCG
* * * ** * * * * *
29871509 ACTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCCTAGAC
261 GCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* *
29871574 TGGGAATAAACTCTATATG
326 TGGGAATGAACTCTGTATG
* * *
29871593 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
29871658 C-GACCGGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGATCCCCCGCTGCATGCTGTC-GAT
66 CGGACCGAAGAGGCATAATGCGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCTG-T
* * * *
29871721 CCCGCTACCACAACCCTC-ATTCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCATAAGC
130 CCCACTACCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* ** * * * * * * * * *
29871785 TAACCCACAAAACGAGTGTGCAGGCGTTCAGCCCGTCGAAGAGGCAGAATGTGCAAG-CTGGGGA
194 CAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTC-GGGGA
* *
29871849 TCGG-TCCGGTCCCCCATGCGTGCTATAGATCCTGTTACTTGTCCTACTACCGCAACCCTCGGTC
258 TCGGCT-CGGTCCCCCCTGCGTGC--T-G-T-C-G--A----TCCTGCTACCGCAACCCTCGGTC
* * * *
29871913 CGAATC-GATCTTAGACTAGCAATGAACTGC-GTATG
310 TG-GTCTGATCTTAGACTGGGAATGAACT-CTGTATG
* * * * * * *
29871948 CTTAGACAT-TGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAATGAGCGTACGGGCGCTCAG
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
29872012 TC-GATCGGAGAGGCAGAATGCGTAA-GCTGGGGACCGGCCCGGTCCCCACT-TGCGTGCTG
65 CCGGACCGAAGAGGCATAATGCGCAAGGC-GGGGATCGACCCGGTCCCC-CTCTGCGTGCTG
29872071 TCAATCCTGT
Statistics
Matches: 963, Mismatches: 168, Indels: 104
0.78 0.14 0.08
Matches are distributed among these distances:
342 4 0.00
343 455 0.47
344 5 0.01
345 1 0.00
346 1 0.00
347 5 0.01
348 3 0.00
349 3 0.00
351 1 0.00
352 2 0.00
353 3 0.00
354 1 0.00
355 181 0.19
356 48 0.05
358 3 0.00
359 3 0.00
361 2 0.00
363 1 0.00
364 4 0.00
367 5 0.01
368 231 0.24
369 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (344 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGACCGAAGAGGCATAATGCGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCTGTC
CCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCG
GCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
TGGGAATGAACTCTGTATG
Found at i:29872453 original size:26 final size:26
Alignment explanation
Indices: 29872424--29872476 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29872414 CTGATCCGAT
29872424 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
29872450 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
29872476 C
1 C
29872477 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:29873225 original size:159 final size:158
Alignment explanation
Indices: 29872830--29873281 Score: 498
Period size: 159 Copynumber: 2.8 Consensus size: 158
29872820 AACTCTGTAT
*
29872830 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
29872895 TCGACCGGAGAGGTAGAATGTGTAAGCCAAGAATCTACCCGGTCCCCCCTTGGGTGCTGTCGATC
65 TCGGCCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACCCGGTCCCCTCTTGGGTGCTGCCGATC
* * *
29872960 CTGCTACTACAACCCTCGATCCGGTTCGA
130 CTGCTACCACAACCCTCGAGCCGGCTCGA
* ** *
29872989 TCTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * * * *
29873054 CCGGCCAAAGAGGCATAATGTGCAAGCCAGGGACCGACCCGGTCTCCCTC-TGTGTGCTGCCGGT
65 TCGGCCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACCCGGTC-CCCTCTTGGGTGCTGCCGAT
* * *
29873118 -CTCGCTGCCACAACCCTCG-GCCTGGCTGGG
129 CCT-GCTACCACAACCCTCGAGCC-GGCTCGA
* * *
29873148 GCTTAGACGTGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
29873213 TCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCC-CTTGCGTCCTGCCGATC
65 TCGGCCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACCCGGTCCCCTCTTGGGTGCTGCCGATC
29873277 CTGCT
130 CTGCT
29873282 GCCGTAACCC
Statistics
Matches: 239, Mismatches: 47, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 22 0.09
159 211 0.88
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAT
CGGCCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACCCGGTCCCCTCTTGGGTGCTGCCGATCC
TGCTACCACAACCCTCGAGCCGGCTCGA
Found at i:29874418 original size:159 final size:158
Alignment explanation
Indices: 29874232--29874523 Score: 361
Period size: 159 Copynumber: 1.8 Consensus size: 158
29874222 TTAGACTAGG
* * * * *
29874232 AATGAACTCCGTATGCATAAGTCAACCCACGAAA-TGAGCGTACGGGCGCTGAGTCGGTCGAAGA
1 AATGAACTCCGTATGCATAAGCCAACCCACAAAACGGA-CGTACGGGCACTCAGTCGGTCGAAGA
* * * * *
29874296 GGCATAACGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCTGGTCCCACTGCCATA
65 GGCAGAACGCGCAAGCCGAGGATCAGCCCGATCCCCCT-TGCGTGCTGCTGATCCCACTGCCATA
29874361 ACCCTCAGTTTGGCTGGGGCTTAGACATGC
129 ACCCTCAGTTTGGCTGGGGCTTAGACATGC
* * * * *
29874391 AATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGACGTATGGGCACTCAGTTGGTCGGAGAG
1 AATGAACTCCGTATGCATAAGCCAACCCACAAAACGGACGTACGGGCACTCAGTCGGTCGAAGAG
* * * * ** *
29874456 GCAGAATGTGCAAGCCGAGGATCAGCTCGATCCCCCTTGTGTGCTGCTGATCCTGCTGCCGTAAC
66 GCAGAACGCGCAAGCCGAGGATCAGCCCGATCCCCCTTGCGTGCTGCTGATCCCACTGCCATAAC
29874521 CCT
131 CCT
29874524 TGATCCAGTC
Statistics
Matches: 110, Mismatches: 22, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
158 26 0.24
159 82 0.75
160 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
AATGAACTCCGTATGCATAAGCCAACCCACAAAACGGACGTACGGGCACTCAGTCGGTCGAAGAG
GCAGAACGCGCAAGCCGAGGATCAGCCCGATCCCCCTTGCGTGCTGCTGATCCCACTGCCATAAC
CCTCAGTTTGGCTGGGGCTTAGACATGC
Found at i:29874579 original size:26 final size:26
Alignment explanation
Indices: 29874538--29874590 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29874528 CCAGTCTGAT
*
29874538 CTTAGACTGGAAATGAACTCCTTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
29874564 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
29874590 C
1 C
29874591 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:29875611 original size:26 final size:26
Alignment explanation
Indices: 29875582--29875634 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29875572 CCGATCCAAT
29875582 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29875608 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29875634 C
1 C
29875635 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29876122 original size:26 final size:26
Alignment explanation
Indices: 29876071--29876122 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
29876061 CTAGTCTGAT
***
29876071 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29876097 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
29876123 TCGAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29876574 original size:26 final size:26
Alignment explanation
Indices: 29876536--29876586 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29876526 GGCTCAAAAT
*
29876536 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
29876562 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
29876587 GCCTAACCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:29876785 original size:26 final size:26
Alignment explanation
Indices: 29876733--29876785 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29876723 TTGGTCCGAT
* *
29876733 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGAATG
29876759 CTTAGACAT-GGAATGAACTCTGAATG
1 CTTAGAC-TGGGAATGAACTCTGAATG
29876785 C
1 C
29876786 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGAATG
Found at i:29877668 original size:26 final size:26
Alignment explanation
Indices: 29877630--29877679 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29877620 TCGAGGTGAT
29877630 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29877656 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
29877680 CGCCTAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29878153 original size:158 final size:154
Alignment explanation
Indices: 29877656--29878191 Score: 463
Period size: 154 Copynumber: 3.4 Consensus size: 154
29877646 ACTCCGTATG
* * * *
29877656 CTTAGACATGGAATGAACTCCGTACGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * *
29877721 C-GGTCGAAGAGGCAGAATGCATAAGCCGGGGATTAGCCCGGTCCCTCCTTGCATGTTGTCGATC
65 CAGATAGAA-AGGCAGAATGCATAAGCCGGGGATTGGCCCGGTCCC-CC-TGCATGCTGTCGATC
*
29877785 CTGCTTTCGCAA--C-C-GTCGGTCCGAT
127 CTGCTCT-GCAACCCTCGGTCGGTCCGAT
* * * * * *
29877810 CTGAGACTTTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGTTAAG-
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * ** * ** *
29877874 CAGATCGGAAAGGCATAATGCGCAAGCCAGGGATTGGCCCAATCCCCCTCTGCATGCTGTCGGTC
65 CAGAT-AGAAAGGCAGAATGCATAAGCCGGGGATTGGCCCGGT-CCCC-CTGCATGCTGTCGATC
* ** * * * **
29877939 CCGCTGCCACAACCCTCGGTCCGACTGGGG
127 CTGCT-CTGCAACCCTCGGTCGGTC-CGAT
* * * ** * *
29877969 CTTAGACAAGGAATGGACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
29878034 CAGCTAGAAAGGCAGAATGTATAAGCCGGGGATCGGCTCGGTCTCCCCTGCGTGCTGTCGATCCT
65 CAGATAGAAAGGCAGAATGCATAAGCCGGGGATTGGCCCGGTC-CCCCTGCATGCTGTCGATCCT
29878099 GCTACTGCAACCCTCGGTTCGGTCCGAT
129 GCT-CTGCAACCCTCGG-TCGGTCCGAT
* * * *
29878127 CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
29878192 TGATCGGAGA
Statistics
Matches: 290, Mismatches: 78, Indels: 24
0.74 0.20 0.06
Matches are distributed among these distances:
153 1 0.00
154 102 0.35
155 7 0.02
156 1 0.00
157 1 0.00
158 89 0.31
159 85 0.29
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (154 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
AGATAGAAAGGCAGAATGCATAAGCCGGGGATTGGCCCGGTCCCCCTGCATGCTGTCGATCCTGC
TCTGCAACCCTCGGTCGGTCCGAT
Found at i:29878842 original size:26 final size:26
Alignment explanation
Indices: 29878813--29878863 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
29878803 CCGGTCTGAT
29878813 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
* *
29878839 CTTAGACTGGGGATTAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
29878864 GTCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATA
Found at i:29879281 original size:171 final size:171
Alignment explanation
Indices: 29878976--29879296 Score: 473
Period size: 171 Copynumber: 1.9 Consensus size: 171
29878966 TCCTGCTGTC
* * *
29878976 GCAACCCTCGACCCGGTCTGATCTTAGACTGGTGATGAACTCCGTATGCCTAAGTTAACCCATGA
1 GCAACCCTCGACCCGGTCTGATCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGA
* ** * * **
29879041 AACGAGCGTGCGAGCGCTCAACTGGCCGGAGAGGTCGATCGGAGAGGCAGAATGTGAAAGCCAGG
66 AACGAGCGTGCGAGCGCTCAACAGGCCAAAGAGGCCGATCGGAGAGGCAAAATACGAAAGCCAGG
*
29879106 GATTGGCTCGGTCCACCCCTACTGCTGCTAGTCCTACAGCT
131 GATTGGCTCAGTCCACCCCTACTGCTGCTAGTCCTACAGCT
**
29879147 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGA
1 GCAACCCTCGACCCGGTCTGATCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGA
* * * *
29879212 AACGAGCGTGCGGGCGCTCAGCAGGCCAAAGAGGCCGA-CTGGAGAGGCAAAATACGAAAGTCGG
66 AACGAGCGTGCGAGCGCTCAACAGGCCAAAGAGGCCGATC-GGAGAGGCAAAATACGAAAGCCAG
29879276 GGATTGGCTCAGTCCACCCCT
130 GGATTGGCTCAGTCCACCCCT
29879297 GCATGCTACT
Statistics
Matches: 132, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
170 1 0.01
171 131 0.99
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.18
Consensus pattern (171 bp):
GCAACCCTCGACCCGGTCTGATCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGA
AACGAGCGTGCGAGCGCTCAACAGGCCAAAGAGGCCGATCGGAGAGGCAAAATACGAAAGCCAGG
GATTGGCTCAGTCCACCCCTACTGCTGCTAGTCCTACAGCT
Found at i:29879735 original size:159 final size:158
Alignment explanation
Indices: 29879369--29879735 Score: 353
Period size: 158 Copynumber: 2.3 Consensus size: 158
29879359 CTTGGAATGA
* *
29879369 ACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
1 ACTCCG-A-GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCG
* * *
29879434 GGTGCTCAGCCGACCAAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGC
64 GGCGCTCAACCGACCAAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTCCGTGC
* * * **
29879499 TATCGATCCTATTGCCGTAACCCTCGGTCG
129 TACCGATCCCACTGCCACAACCCTCGGTCG
* * * * * * * *
29879529 AGTCCGATCTTTG-ACTGGGAATGAACTCTGTATGCATAAG-TCAACCCACAAAACGAGTGTGTG
1 ACTCCGAGCTTAGAAAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACAAAACGAGCGTGCG
* * * * * * * * * *
29879592 GGCGCTGAACTGGCCGAAGAGGCATAATGCGTAAGTTGGGGATCGGCTCGATCCCCCTCTCCGTG
64 GGCGCTCAACCGACCAAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCC-CTCCGTG
* *
29879657 CTGCCGGTCCCACTGCCACAACCCTCGGTCCG
128 CTACCGATCCCACTGCCACAACCCTCGGT-CG
* * * *
29879689 ACT-GGGGCTTAGAAATGGAATGAACCCCCTATGCCTAAGCTAACCCA
1 ACTCCGAGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCTAACCCA
29879736 TGAAACCGAC
Statistics
Matches: 161, Mismatches: 40, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 88 0.55
159 59 0.37
160 12 0.07
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
ACTCCGAGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGG
CGCTCAACCGACCAAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTCCGTGCTA
CCGATCCCACTGCCACAACCCTCGGTCG
Found at i:29880212 original size:26 final size:26
Alignment explanation
Indices: 29880174--29880226 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29880164 CTGGTCCGAT
*
29880174 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29880200 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29880226 C
1 C
29880227 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29880337 original size:196 final size:196
Alignment explanation
Indices: 29880003--29880440 Score: 628
Period size: 196 Copynumber: 2.2 Consensus size: 196
29879993 TCCGGCTGGG
* * **
29880003 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTACTCAG
* * ** *
29880068 TCGGCCGGAGAGGTAGAATGCGCAAGCCTGGGATCGGCCCAGTCCCCCTTACGTGCTGTCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCAGTCCCCCTTACATGCTGTCGATCC
* * * *
29880133 TGCTGCTGGTCTTGCTGTCGTAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGT
131 TGCTGCTGGTCCTGCTGTCGCAACCCTCAGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGT
29880197 AT
195 AT
* *
29880199 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTACTCAG
* * * ** *
29880264 TCGATCGGAGAGGCAGAATGCGTAAGGCAAGGATCGGCCTGGTCCTTCC-TACATGCTGTCGATC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCAGTCC-CCCTTACATGCTGTCGATC
*
29880328 CTGCTGCTGGTCCTGCTGTCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGT
130 CTGCTGCTGGTCCTGCTGTCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGT
29880393 AT
195 AT
* *
29880395 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
29880441 TGGGCATGCG
Statistics
Matches: 216, Mismatches: 24, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
196 211 0.98
197 5 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTACTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCAGTCCCCCTTACATGCTGTCGATCC
TGCTGCTGGTCCTGCTGTCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
T
Found at i:29880412 original size:26 final size:26
Alignment explanation
Indices: 29880370--29880422 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29880360 TCGGTTCGAT
*
29880370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
29880396 CTTAGACAT-GGAGTGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
29880422 C
1 C
29880423 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:29881334 original size:26 final size:26
Alignment explanation
Indices: 29881296--29881346 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29881286 GGCTCAAAAT
29881296 CTTAGAATGGGAATGAACTCCGTATA
1 CTTAGAATGGGAATGAACTCCGTATA
*
29881322 CTTAGACAT-GGAATGAACTTCGTAT
1 CTTAGA-ATGGGAATGAACTCCGTAT
29881347 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATA
Found at i:29881624 original size:159 final size:158
Alignment explanation
Indices: 29881461--29881783 Score: 382
Period size: 159 Copynumber: 2.0 Consensus size: 158
29881451 CTGCTATTGT
* * *
29881461 AACCCTTGGTCCGATCT-GATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTC-AAACCATG
1 AACCCTTGGT-CGAACTGGAGCTTAGACAT-GGAATGAACTCCCTATGCATAAG-CGAAACCATG
** * * *
29881523 AAACGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT
63 AAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGT
* *
29881588 CCCCCTCTGCATGCTGCCGGTCTCGCTGCCAC
128 CCCCC-CTGCATGCTGCCGATCTCGCTACCAC
* * * *
29881620 AACCCTTGGTCTAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCATGAAA
1 AACCCTTGGTCGAACTGGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCGAAACCATGAAA
* * * * * *
29881685 TGGGTGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCTCGGTCCC
66 CGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCC
* * *
29881750 CCCTGCGTGCTGCCGATCTTGCTACCGC
131 CCCTGCATGCTGCCGATCTCGCTACCAC
29881778 AACCCT
1 AACCCT
29881784 CGATCCAGTC
Statistics
Matches: 138, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
158 32 0.23
159 105 0.76
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
AACCCTTGGTCGAACTGGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCGAAACCATGAAA
CGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCC
CCCTGCATGCTGCCGATCTCGCTACCAC
Found at i:29881909 original size:134 final size:134
Alignment explanation
Indices: 29881662--29881923 Score: 330
Period size: 134 Copynumber: 2.0 Consensus size: 134
29881652 ATGAACTCCC
* * * * * * *
29881662 TATGCCTAAGCGAACCCATGAAATGGGTGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGA
1 TATGCCTAAGCAAACCCATGAAACGAGCGTGCAGGCACTCAACCGATCGGAGAGCCAGAATGCGA
** *
29881727 AAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGCAACCCTCGATCCAG
66 AAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGCAACCCTCGATCCAG
29881792 TCTG
131 TCTG
* * *
29881796 TATGCCTAAGCAAACCCATGAAACGAGCGTGCAGGCGCTCAACC-AGCTGGAGAGCCAGAATGTG
1 TATGCCTAAGCAAACCCATGAAACGAGCGTGCAGGCACTCAACCGATC-GGAGAGCCAGAATGCG
* * * * *
29881860 CAAGCTGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCCTT-CTACCGTAACCTTCGATCC
65 AAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGCCGAT-CTTGCTACCGCAACCCTCGATCC
29881924 GGTCCAACCT
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
133 2 0.02
134 103 0.95
135 3 0.03
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (134 bp):
TATGCCTAAGCAAACCCATGAAACGAGCGTGCAGGCACTCAACCGATCGGAGAGCCAGAATGCGA
AAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGCAACCCTCGATCCAG
TCTG
Found at i:29882654 original size:26 final size:26
Alignment explanation
Indices: 29882603--29882655 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29882593 TCCGGTCTAT
* *
29882603 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29882629 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29882655 C
1 C
29882656 CTAAGCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29883130 original size:158 final size:157
Alignment explanation
Indices: 29882629--29883130 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 157
29882619 ACTTCGTATG
* * * * *
29882629 CTTAGACATGGAATGAACTCCATATGCCTAAGCAAAACCACGAAACGAGCATGCGGTCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
29882694 CAACCGAAAAGGTAGAATGTGCAAACCGGGGATCGACCCGAG-CCCCCTTGCGTGCTATCGATCC
66 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCG-GTCCCCCCTGCGTGCTATCGATCC
* * *
29882758 TACTACCACAACCCTCAGTCTAGTCCAAT
130 TGCTACCACAACCCTCAGTC-CGTCTAAT
* * * * *
29882787 CTTATA-TTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * * * * *
29882851 -CTGCTTGGAGAGACATAATGCGTAAGCCAGGGATCGACCCGATCCTTCTCTGCATGCTACCGGT
65 CCAGC-CGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC-CCCCTGCGTGCTATCGAT
* * ** **
29882915 -CTCGTTACCATAACCCTCAGTCCAACTAGGG
128 CCT-GCTACCACAACCCTCAGTCCGTCTA-AT
* * * *
29882946 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
29883011 CGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATC-AGCCTGGTCCCCCCTGTGTGCTATCGATCC
66 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGCGTGCTATCGATCC
*
29883075 TGCTACCGCAACCCTCAGTCCGGTCTAAT
130 TGCTACCACAACCCTCAGTCC-GTCTAAT
29883104 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29883131 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 71, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 6 0.02
158 136 0.52
159 113 0.43
160 6 0.02
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCT
GCTACCACAACCCTCAGTCCGTCTAAT
Found at i:29883133 original size:26 final size:26
Alignment explanation
Indices: 29883104--29883156 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29883094 CCGGTCTAAT
29883104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29883130 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29883156 C
1 C
29883157 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29884581 original size:158 final size:157
Alignment explanation
Indices: 29884162--29884590 Score: 387
Period size: 158 Copynumber: 2.7 Consensus size: 157
29884152 GCTTAGACAT
* * * * * *
29884162 GGAATAAACTCCCTATGCCTAA-ACCAACCTATGAAAGGGGCGTGCGGGTGCTCAGCCGATCGGA
1 GGAATAAACTCCGTATG-CTAAGA-CAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGTCGGA
* * * * * * * *
29884226 GAGGTAGAATGCATAAGCCAGGGATCGACCTGGTCCCCCCTACGTGCTGTCAATCCTACTATCGC
64 GAGGCAAAATGCACAAGCTAGGGATCGACCTGATCCCCCTTACGTGCTATCAATCCTACTATAGC
* * * * *
29884291 AACCCTCGGTTCGGTCTGATCTTAGACGG
129 AACCCTCAGTCCGATCCGATCTTAGAAGG
* * * * * * * *
29884320 GGAATGAACTCCGTATGCTTAGACTACCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCCAGACA
1 GGAATAAACTCCGTATGCTAAGACAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGTCGGAGA
* * * * ** *
29884385 GGCAAAATGCACTAG-TCAGGGATCGACCCGATCGCCCCTTACGTGCTATCGATCTTGTTGTAGC
66 GGCAAAATGCACAAGCT-AGGGATCGACCTGATC-CCCCTTACGTGCTATCAATCCTACTATAGC
*
29884449 AACCCTTAGTCCGATCCGATCTTA-AAGTG
129 AACCCTCAGTCCGATCCGATCTTAGAAG-G
* * * *
29884478 GGAATAAACTCCGTATGCTGAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGTCGGTCGGAG
1 GGAATAAACTCCGTATGCT-AAGACAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGTCGGAG
* * * *
29884543 AGGCATAATGCGCAAGCTGGGGATCGACCTGATCCCCCTCTGCGTGCT
65 AGGCAAAATGCACAAGCTAGGGATCGACCTGATCCCCCT-TACGTGCT
29884591 GCCGGTCCCG
Statistics
Matches: 212, Mismatches: 52, Indels: 13
0.77 0.19 0.05
Matches are distributed among these distances:
157 62 0.29
158 81 0.38
159 68 0.32
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
GGAATAAACTCCGTATGCTAAGACAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGTCGGAGA
GGCAAAATGCACAAGCTAGGGATCGACCTGATCCCCCTTACGTGCTATCAATCCTACTATAGCAA
CCCTCAGTCCGATCCGATCTTAGAAGG
Found at i:29884589 original size:159 final size:159
Alignment explanation
Indices: 29883853--29884621 Score: 526
Period size: 159 Copynumber: 4.9 Consensus size: 159
29883843 ACATGCAAGG
* * * * * *
29883853 AACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGTTCAGCTGGCCGGAGAGGCAG
1 AACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAG
** * * *
29883918 AATGCACAAGCCGGGGATCGGTCGGGTCCCCC-CTGAGTGCTGTCGATCCTGCTGTAGCAA-CCT
65 AATGCACAAGCCGGGGATCGACCTGATCCCCCTCTGCGTGCTGTCGATCCTGCTGTAGCAACCCT
* *
29883981 CAGTCC-AGTCCGATCTT--AACTGGGAATG
130 CAGTCCGA-TCCGATCTTAGAAGTGGGAATA
* * * * * * * * *
29884009 AACTCCGTACGCATAAGTCAACCCACGAAACAAGGGTGCGGGAGCTGAGCCAGCCGAAGAGGCAT
1 AACTCCGTATGC-TAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAG
** * * * * * *
29884074 AATGCGTAGGCCGGTGATCGACC-CAGTCCCCCTCTGCATGCTG-CCATTCCTGCTGCCA-CAAC
65 AATGCACAAGCCGGGGATCGACCTGA-TCCCCCTCTGCGTGCTGTCGA-TCCTGCTG-TAGCAAC
* * * * **
29884136 CCTCGGTCTG-GCTGGGGCTTAGACA-T-GGAATA
127 CCTCAGTCCGATC-CGATCTTAGA-AGTGGGAATA
* * * * * * ** *
29884168 AACTCCCTATGCCTAAACCAACCTATGAAAGGGGCGTGCGGGTGCTCAGCCGATCGGAGAGGTAG
1 AACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAG
* * * * * * * *
29884233 AATGCATAAGCCAGGGATCGACCTGGTCCCCC-CTACGTGCTGTCAATCCTACTATCGCAACCCT
65 AATGCACAAGCCGGGGATCGACCTGATCCCCCTCTGCGTGCTGTCGATCCTGCTGTAGCAACCCT
* * * * * *
29884297 CGGTTCGGTCTGATCTTAGACG-GGGAATG
130 CAGTCCGATCCGATCTTAGAAGTGGGAATA
* * * * * * * *
29884326 AACTCCGTATGCTTAGACTACCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCCAGACAGGCAAA
1 AACTCCGTATGCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAGA
* * * * * * * *
29884391 ATGCACTAGTCAGGGATCGACCCGATCGCCCCT-TACGTGCTATCGATCTTGTTGTAGCAACCCT
66 ATGCACAAGCCGGGGATCGACCTGATC-CCCCTCTGCGTGCTGTCGATCCTGCTGTAGCAACCCT
*
29884455 TAGTCCGATCCGATCTTA-AAGTGGGAATA
130 CAGTCCGATCCGATCTTAGAAGTGGGAATA
* * * * * *
29884484 AACTCCGTATGCTGAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGTCGGTCGGAGAGGCAT
1 AACTCCGTATGCT-AAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAG
* * * * * *
29884549 AATGCGCAAGCTGGGGATCGACCTGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCA-CAACCC
65 AATGCACAAGCCGGGGATCGACCTGATCCCCCTCTGCGTGCTGTCGATCCTGCTG-TAGCAACCC
29884613 TCAGTCCGA
129 TCAGTCCGA
29884622 CTGGGGCTTA
Statistics
Matches: 454, Mismatches: 135, Indels: 45
0.72 0.21 0.07
Matches are distributed among these distances:
155 1 0.00
156 73 0.16
157 83 0.18
158 125 0.28
159 167 0.37
160 4 0.01
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
AACTCCGTATGCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGCCGGAGAGGCAGA
ATGCACAAGCCGGGGATCGACCTGATCCCCCTCTGCGTGCTGTCGATCCTGCTGTAGCAACCCTC
AGTCCGATCCGATCTTAGAAGTGGGAATA
Found at i:29884998 original size:26 final size:26
Alignment explanation
Indices: 29884969--29885021 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29884959 CTGATCCGAT
*
29884969 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29884995 CTTAGACATGGAATGATCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29885021 C
1 C
29885022 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29885496 original size:26 final size:26
Alignment explanation
Indices: 29885467--29885516 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
29885457 CCGGTCCGAT
29885467 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
29885493 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
29885517 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:29885914 original size:158 final size:156
Alignment explanation
Indices: 29885673--29886158 Score: 471
Period size: 158 Copynumber: 3.1 Consensus size: 156
29885663 GCTTAGACAT
* * * * *
29885673 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGGGTGTGCGGGCGCTCAGCCGGTCGGAG
* * *
29885738 AGGCAGAATGCACTAGCCGGGTACCGACCCGATCCCCCTTGCATGCTGTCGATCCTGCTACCGCA
66 AGGCAGAATGCACAAGCCGGG-ATCGACCCGATCCCCCTTGCGTGCTGTCGATCCTGCTACCGCA
*
29885803 ACCCTCGGTTCGGTCTAATATTAGATTG
130 ACCCTCGGTTCAGTCTAATATTAGA-TG
* * * * * * * * *
29885831 GGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGGGTGTGCAGGCACTGAGCCGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGGGTGTGCGGGCGCTCAGCCGGTCGGAG
* * * * * *
29885896 AGGCATAATGCACAAGCCGGGGATCGACTCGATCCTCCTCTGCGTGCTGTCGGT-CTCGCTGCCA
66 AGGCAGAATGCACAAGCC-GGGATCGACCCGATCCCCCT-TGCGTGCTGTCGATCCT-GCTACCG
* * *
29885960 CAACCCTCGGTCCAGTCT--TA-GACAT-
128 CAACCCTCGGTTCAGTCTAATATTAGATG
* * * *
29885985 GGAATGAACTCCCTATGCCTGAGCCAACCCATGAAATAGGCT-TGCGGGCGCTCAGCCGATCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-AGGGTGTGCGGGCGCTCAGCCGGTCGGA
* ** * * * * *
29886049 GAGGTAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCCTGCGGGCTGTCGTTCCTGTTACCGT
65 GAGGCAGAATGCACAAGCCG-GGATCGACCCGATCCCCCTTGCGTGCTGTCGATCCTGCTACCGC
* * *
29886114 AACCCTCGATTCAGTCCAATCTTAGACTG
129 AACCCTCGGTTCAGTCTAATATTAGA-TG
*
29886143 GGAATGAACTCTGTAT
1 GGAATGAACTCCGTAT
29886159 CCTTAGGCTG
Statistics
Matches: 257, Mismatches: 60, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
153 31 0.12
154 80 0.31
155 5 0.02
156 4 0.02
157 3 0.01
158 98 0.38
159 36 0.14
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGGGTGTGCGGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCACAAGCCGGGATCGACCCGATCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAA
CCCTCGGTTCAGTCTAATATTAGATG
Found at i:29886845 original size:158 final size:155
Alignment explanation
Indices: 29886372--29886867 Score: 453
Period size: 158 Copynumber: 3.1 Consensus size: 155
29886362 CCGTGTGCTT
* * * *
29886372 GACATGGAATG-ACTCCGTATGCCTAAGCGAACCCATTAACCGAGCGTGCAGGCGCTCAACCGGT
1 GACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGT
* * * * * * ** *
29886436 TGGAGAGGTAGAATGCGCAAGCCGGGGACCAACCTGGTCCCCCCTGCATGCTGTCGATCCTACTG
65 CGGAGAGGCAGAATGCGCAAG-CAGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCTGCTG
* **
29886501 TCGCAACCCTCGGTCCAATTGGATCTTA
129 TCGCAACCCTCGGT-CGATCCGATCTTA
* * ** * *
29886529 GAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGA
1 GACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * **
29886593 TCGGAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATCGCCCTTTGCATGCTACCGATCCTGC
64 TCGGAGAGGCAGAATGCGCAAGCAG-GGATCAGCCCGGTC-CCCCCTGCATGCTACCGATCCTGC
* * **
29886658 TGCCACAACCCTCGGTCG--CCTGGGGCTTA
127 TGTCGCAACCCTCGGTCGATCC--GATCTTA
* ** * * *
29886687 GACATGGAATGAACTCCCTATGCCTAAGACAACAAATGAAACGGGTGTGCGGGCGCTCAGTCGGT
1 GACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGT
* * *
29886752 CGGAGAGGCAGAATGCACAAGCTAGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTG
65 CGGAGAGGCAGAATGCGCAAGC-AGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCTGCTG
29886817 TCGCAACCCTCGGTCTGATCCGATCTTA
129 TCGCAACCCTCGGTC-GATCCGATCTTA
* *
29886845 GAC-TGGGAATAAACTTCGTATGC
1 GACAT-GGAATGAACTCCGTATGC
29886868 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 48 0.18
158 179 0.67
159 36 0.14
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
GACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTC
GGAGAGGCAGAATGCGCAAGCAGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCTGCTGTC
GCAACCCTCGGTCGATCCGATCTTA
Found at i:29886877 original size:26 final size:26
Alignment explanation
Indices: 29886841--29886893 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29886831 CTGATCCGAT
*
29886841 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
29886867 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29886893 C
1 C
29886894 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29887230 original size:26 final size:26
Alignment explanation
Indices: 29887194--29887246 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29887184 CCAGTTAGAT
*
29887194 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29887220 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29887246 C
1 C
29887247 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29887565 original size:26 final size:26
Alignment explanation
Indices: 29887536--29887588 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29887526 CCGATTCGAT
29887536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29887562 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29887588 C
1 C
29887589 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.