Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 321 of 402
Found at i:29887797 original size:26 final size:26
Alignment explanation
Indices: 29887746--29887798 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29887736 TCGGTCTGAT
**
29887746 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29887772 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29887798 C
1 C
29887799 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29888285 original size:159 final size:156
Alignment explanation
Indices: 29887905--29888300 Score: 411
Period size: 157 Copynumber: 2.5 Consensus size: 156
29887895 ATCCCGCTGC
* * * * *
29887905 CGATCCTGTTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGATCCAGCTGCCACAACCCTCTGTC-CGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * *
29887970 AGCCAACCCACGAAAGGAGCGTACGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCACAAGTCGGG
65 AGCCAACCCACGAAAGGAGCATACGAGCGCTCAGCCAGTCGGAGAGGCAGAATGCACAAGCCGGG
*
29888035 GACCGGCCCGGTCCCCCTGCGTGCTGT
130 GACCGGCCCGGTCCCCCTGCGTGCTAT
* * * * **
29888062 CGATCTAGCTACCACAACCCT-TGGTCCGGTCCGATCTTAGAC-TGTGAATGAACTCCGTATGCC
1 CGATCCAGCTGCCACAACCCTCT-GTCCGCT-GGGGCTTAGACATG-GAATGAACTCCGTATGCC
* * * ** * * **
29888125 TAAGTCAACCCACGAAATGAGCATTCGAGCTTTGAGCC-GATCGGAGAGGCATAATGTGCAAGCC
63 TAAGCCAACCCACGAAAGGAGCATACGAGCGCTCAGCCAG-TCGGAGAGGCAGAATGCACAAGCC
* * *
29888189 GGGGATCGGCTCGGTCCCCCTCTGCGTGTTAT
127 GGGGACCGGCCCGGT-CCCC-CTGCGTGCTAT
* * *
29888221 CGGTCCCGCTGCCACAACCCTCTGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGATCCAGCTGCCACAACCCTCTGTCC-GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
*
29888286 AGCCAACCCATGAAA
65 AGCCAACCCACGAAA
29888301 CGGGCGTGCG
Statistics
Matches: 192, Mismatches: 38, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
156 5 0.03
157 108 0.56
158 4 0.02
159 70 0.36
160 5 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CGATCCAGCTGCCACAACCCTCTGTCCGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
GCCAACCCACGAAAGGAGCATACGAGCGCTCAGCCAGTCGGAGAGGCAGAATGCACAAGCCGGGG
ACCGGCCCGGTCCCCCTGCGTGCTAT
Found at i:29888347 original size:159 final size:156
Alignment explanation
Indices: 29887905--29888400 Score: 442
Period size: 159 Copynumber: 3.1 Consensus size: 156
29887895 ATCCCGCTGC
* * * * *
29887905 CGATCCTGTTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGATCCAGCTGCCACAACCCTCTGTC-CGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* *
29887970 AGCCAACCCACGAAAGGAGCGTACGGGCGCTCAGTC-AGTCGGAGAGGCAGAATGCACAAGTCGG
65 AGCCAACCCACGAAAGG-GCGTACGGGCACTCAGTCGA-TCGGAGAGGCAGAATGCACAAGCCGG
* *
29888034 GGACCGGCCCGGT-CCCCCTGCGTGCTGT
128 GGATCGGCCCGGTCCCCCCTGCGTGCTAT
* * * * **
29888062 CGATCTAGCTACCACAACCCT-TGGTCCGGTCCGATCTTAGAC-TGTGAATGAACTCCGTATGCC
1 CGATCCAGCTGCCACAACCCTCT-GTCCGCT-GGGGCTTAGACATG-GAATGAACTCCGTATGCC
* * * * * ** * * * **
29888125 TAAGTCAACCCACGAAATGAGCATTCGAGCTTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCG
63 TAAGCCAACCCACGAAA-GGGCGTACGGGCACTCAGTCGATCGGAGAGGCAGAATGCACAAGCCG
* *
29888190 GGGATCGGCTCGGTCCCCCTCTGCGTGTTAT
127 GGGATCGGCCCGGTCCCCC-CTGCGTGCTAT
* * *
29888221 CGGTCCCGCTGCCACAACCCTCTGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGATCCAGCTGCCACAACCCTCTGTCC-GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * * * *
29888286 AGCCAACCCATGAAACGGGCGTGCGGGCACTCAATCGACCGGAAAGGTAGAATGCATAAGCCAGG
65 AGCCAACCCACGAAA-GGGCGTACGGGCACTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGG
* * * *
29888351 GTTTGGCCCGGTCCACCCTGCGTGCTAC
129 GATCGGCCCGGTCCCCCCTGCGTGCTAT
* * **
29888379 CAATCCTGCTGCTGCAACCCTC
1 CGATCCAGCTGCCACAACCCTC
29888401 AGTCTGGTCT
Statistics
Matches: 262, Mismatches: 67, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
156 4 0.02
157 106 0.40
158 32 0.12
159 115 0.44
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (156 bp):
CGATCCAGCTGCCACAACCCTCTGTCCGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
GCCAACCCACGAAAGGGCGTACGGGCACTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGA
TCGGCCCGGTCCCCCCTGCGTGCTAT
Found at i:29889476 original size:26 final size:26
Alignment explanation
Indices: 29889447--29889496 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
29889437 GTTTGATCTT
*
29889447 AGACTGGGAATGAACTTTGTATGCTC
1 AGACTGGGAATGAACTTCGTATGCTC
*
29889473 AGACTGGGGATGAACTTCGTATGC
1 AGACTGGGAATGAACTTCGTATGC
29889497 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTTCGTATGCTC
Found at i:29889778 original size:197 final size:196
Alignment explanation
Indices: 29889414--29889794 Score: 428
Period size: 197 Copynumber: 1.9 Consensus size: 196
29889404 GCTCTCGATC
* ** ***
29889414 CTGCTGCCGCAACCTTCAATCCAGTTTGATCTTAGACTGGGAATGAACTTTGTATGCTCAGACTG
1 CTGCTACCGCAACCTTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTG
* * * * * ** * *
29889479 GGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGTAG
66 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACCAACCGGAA
* ** * * * *
29889544 AGGTAGAATGCGTAAGTCGGGGATCGGTCCAGTCCCCCCCTGCGTACTGTCGATCCTATTGTTGG
131 AGGCAGAATGCACAAGTCGGAGACCGCTCCAGT-CCCCCCTGCGTACTATCGATCCTATTGTTGG
29889609 TT
195 TT
* * *
29889611 CTGCTACCGCAACCTTCAGTCCAGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACAT
1 CTGCTACCGCAACCTTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGAC-T
* *
29889676 -GGAATGAA-TTCCGTATGCC-ATAGCCAACCCACGAAACGAGCATACGAGCGCTTAGCCAACCG
65 GGGAATGAACTT-CGTATGCCTA-AGCCAACCCACGAAACGAGCATACGAGCGCTCAACCAACCG
* *
29889738 GAAAGGCAGAATGCACAAGTCGGAGACCGACT-CGGTCCCCCCTGCGTGCTATCGATC
128 GAAAGGCAGAATGCACAAGTCGGAGACCG-CTCCAGTCCCCCCTGCGTACTATCGATC
29889795 TTGCTACCGT
Statistics
Matches: 151, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
196 22 0.15
197 127 0.84
198 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
CTGCTACCGCAACCTTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTG
GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACCAACCGGAA
AGGCAGAATGCACAAGTCGGAGACCGCTCCAGTCCCCCCTGCGTACTATCGATCCTATTGTTGGT
T
Found at i:29890065 original size:13 final size:13
Alignment explanation
Indices: 29890047--29890074 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
29890037 CGGGCGCTCA
29890047 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
29890060 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
29890073 GC
1 GC
29890075 AGAATGCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.54, T:0.07
Consensus pattern (13 bp):
GCCGGTCGGAGAG
Found at i:29890206 original size:26 final size:26
Alignment explanation
Indices: 29890168--29890220 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29890158 CCGGTCCGAT
29890168 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29890194 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29890220 C
1 C
29890221 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29890559 original size:26 final size:26
Alignment explanation
Indices: 29890510--29890561 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29890500 CGGTCTGATT
**
29890510 TTAGACTGGCAATGAACTTTGTATGC
1 TTAGACTGGCAATGAACTCCGTATGC
**
29890536 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGCAATGAACTCCGTATGC
29890562 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGCAATGAACTCCGTATGC
Found at i:29890759 original size:26 final size:26
Alignment explanation
Indices: 29890719--29890771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29890709 CTGGTTCGAT
*
29890719 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCAGTATG
29890745 CTTAGACATGA-AATGAACTCAGTATG
1 CTTAGAC-TGAGAATGAACTCAGTATG
29890771 C
1 C
29890772 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCAGTATG
Found at i:29891092 original size:159 final size:158
Alignment explanation
Indices: 29890744--29891310 Score: 611
Period size: 159 Copynumber: 3.6 Consensus size: 158
29890734 AACTCCGTAT
* ** * * *
29890744 GCTTAGACATGAAATGAACTCAGTATGCCTAAGCCAACCCATGAAATGAGC-TTGCGGGCTCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTT-CGGGCGCTCA
* * * * * *
29890808 GTCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGTCCCCCCCT-CGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
** * ** ** * * *
29890872 CCTACTACTGCGGCCCTCGGTCCAGTCCGA
130 CCCGCTGCCACAACCCTCGGTCC-GGCTGG
* * * * * * *
29890902 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCA
* *
29890966 GCCGGTCGGAGAGGCATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
* *
29891031 CCCGTTGCCACAACCCTCAGTCCGGCTAGG
130 CCCGCTGCCACAACCCTCGGTCCGGCT-GG
*
29891061 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAG
* * * * ** * * *
29891126 CCGGCCAGAGAGACAGAATGTGCAAGCCGAGGATCGGTCCGATCCCCCTCTGTGTGCTGCCGGTC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
**
29891191 CCGCTGCCACAACCCTCGGTTTGGCTGG
131 CCGCTGCCACAACCCTCGGTCCGGCTGG
* * *
29891219 GTCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCACTC
1 G-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTTCGGGCGCTC
*
29891283 AGCCTGCCGGAGAGGCAGAATGCGCAAG
64 AGCCGGCCGGAGAGGCAGAATGCGCAAG
29891311 CCAGGGATCT
Statistics
Matches: 342, Mismatches: 60, Indels: 13
0.82 0.14 0.03
Matches are distributed among these distances:
157 1 0.00
158 99 0.29
159 241 0.70
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
CCGCTGCCACAACCCTCGGTCCGGCTGG
Found at i:29891625 original size:26 final size:26
Alignment explanation
Indices: 29891587--29891639 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29891577 CCGGTCCGAT
*
29891587 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29891613 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29891639 C
1 C
29891640 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29891883 original size:868 final size:867
Alignment explanation
Indices: 29890193--29892042 Score: 2406
Period size: 868 Copynumber: 2.1 Consensus size: 867
29890183 AACTCCATAT
* * * *
29890193 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
29890258 CCGGCCGGAGAGGCATAATGCACAAGACGGGGATAGGCCCGGTCCCCCTCTGCATACTGTCGGTC
66 CCGGCCAGAGAGGCA-AATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATACTGCCGGTC
* *
29890323 CTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCA
130 CCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCCTAGGCCTAAGCCA
* *
29890388 ACCCACGAAACGGGCGTAAAGGCACTCAACCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCG
195 ACCCACGAAACAGGCGTAAAGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCG
* * * * *
29890453 ACCCGATCACCCCTACGTGCTACCGATTCACTGCGTAACCCTCGATCCGGTCTGATTTTAGACTG
260 ACCCGATCACCCCTACGTGCTACCAATCCACTGCGAAACCCTCAATCCGGTCTGATCTTAGACTG
** * *
29890518 GCAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
325 GCAATGAACTCCGTAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAATGAAACGA
* * ** * * * * *
29890583 GCGTGCGGGCGCTCAGCCAGCTGGAGAGGCTGGTCGGAGAGGCAGAATGCGTAAGTCGGGGGTCG
390 GCGTGCGGGCGCTCAACCAGCTGGAGAGGCCGACCGAAGAGGCAGAATGCGCAAGTAGAGGATCG
* * * * *
29890648 GCCTGGTCCCCCTCTGCATGCTACCGATCCTACTACTGGTCCTACTGTCGCAACCTTCGGTCTGG
455 ACCTGATCCCCCACTGCATGCTACCGATCCTACTACTGGTCCTACTGTCGCAACCCTCGGTCCGG
*
29890713 TTCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGAAATGAACTCAGTATGCCTAAGC
520 TCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGAAATGAACTCAGTATGCCTAAGC
* * * ** * * * *
29890778 CAACCCATGAAATGAGCTTGCGGGCTCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGAC
585 CAACCCATGAAATGAGCGTACGGGCACTCACCCAGCCGAAGAGGCAGAATGCACAAGCCGAGGAC
* * **
29890843 CGACCCGGTCCCCCCCTCGTGCTGTCGATCCTACTACTGCGGCCCTCGGTCCAGTCCGATCTTAG
650 CGACCCGGTCCCCCCCGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCAGTCCGATCTTAG
* * * * *
29890908 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGAGCCGGTC
715 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGGGCTGAGCCAGCC
* * * * * *
29890973 GGAGAGGCATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCCGTTG
780 AGAGAGGCATAATGCGCAAGTCGAGGACCGACCAGATCCCCCTCTACGTGCTGTCGATCCCGCTA
29891038 CCACAACCCTCAGTCCGGCTAGG
845 CCACAACCCTCAGTCCGGCTAGG
29891061 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * ** *
29891126 CCGGCCAGAGAGACAGAATGTGCAAGCCGAGGATCGGTCCGATCCCCCTCTGTGTGCTGCCGGTC
66 CCGGCCAGAGAGGCA-AATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATACTGCCGGTC
* ** * * *
29891191 CCGCTGCCACAACCCTCGGTTTGGCTGGGTCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCA
130 CCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCCTAGGCCTAAGCCA
*** * *
29891256 ACCCACGAAACAGGCGTGCGGGCACTCAGCCTGCCGGAGAGGCAGAATGCGCAAGCC-AGGGATC
195 ACCCACGAAACAGGCGTAAAGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATC
* * * * * * *
29891320 TACCCGGTC-CTTCCTGCGTGCTGCCAATCCTGCTGTCGAAACCCTCAATCTGGTCTGATCTTAG
259 GACCCGATCAC-CCCTACGTGCTACCAATCC-ACTG-CGAAACCCTCAATCCGGTCTGATCTTAG
*
29891384 ACTGGGAATGAACTCCGTAAGCTTAGACTGGGGATGAACTCC-TATGCCTAAGTCAACCAATGAA
321 ACTGGCAATGAACTCCGTAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAATGAA
29891448 A-GAAGCGTGCGGGCGCTCAACC-GACTGGAGAGGCCGACCGAAGAGGCAGAATGCGCAAGTAGA
386 ACG-AGCGTGCGGGCGCTCAACCAG-CTGGAGAGGCCGACCGAAGAGGCAGAATGCGCAAGTAGA
* ** * * *
29891511 GGATCGACC-GATCCTCCCAC-GCGTGCTGTCGATCCTGCTACTGGTCCTGCTGTCGTAACCCTC
449 GGATCGACCTGATCC-CCCACTGCATGCTACCGATCCTACTACTGGTCCTACTGTCGCAACCCTC
* * * *
29891574 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATG
513 GGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGAAATGAACTCAGTATG
* *
29891639 CCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCACCCAGTCGAAGAGGTAGAATGCACAAGC
578 CCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCACCCAGCCGAAGAGGCAGAATGCACAAGC
*** * *
29891704 CGAGGACCGTTTCGGTCCCCCCCGCGTGCTGTCGATCCTACTGCCGCAACCCTTGGTCC-GATCC
643 CGAGGACCGACCCGGTCCCCCCCGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCAG-TCC
* * *
29891768 GATCTTAGACTGGGAATGAACTCCATATGCCTATGTCAACCCACGAAATGAGTGTTCGGGGGCTG
707 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGGGCTG
* * *
29891833 AGTCAGCCAGAGAGGCATAATGCGCAAGTCGGGGACC-AGCCAGGTCCCCCTCTACGTGCTGTCG
772 AGCCAGCCAGAGAGGCATAATGCGCAAGTCGAGGACCGA-CCAGATCCCCCTCTACGTGCTGTCG
* **
29891897 GTCCCGCTACCACAACCCTCAGTTTGGCTAGG
836 ATCCCGCTACCACAACCCTCAGTCCGGCTAGG
* * * * * *
29891929 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
29891994 TCGGCCAGAGAGGCAAAGTGCGCAAGCAGAGGATCGACCC-AGTCCCCCT
66 CCGGCCAGAGAGGCAAA-TGCGCAAGCCGAGGATCGGCCCGA-TCCCCCT
29892043 TACGTGCTGC
Statistics
Matches: 844, Mismatches: 127, Indels: 22
0.85 0.13 0.02
Matches are distributed among these distances:
867 7 0.01
868 689 0.82
869 86 0.10
870 62 0.07
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (867 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCAGAGAGGCAAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATACTGCCGGTCC
CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGAAATGAACTCCCTAGGCCTAAGCCAA
CCCACGAAACAGGCGTAAAGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
CCCGATCACCCCTACGTGCTACCAATCCACTGCGAAACCCTCAATCCGGTCTGATCTTAGACTGG
CAATGAACTCCGTAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAG
CGTGCGGGCGCTCAACCAGCTGGAGAGGCCGACCGAAGAGGCAGAATGCGCAAGTAGAGGATCGA
CCTGATCCCCCACTGCATGCTACCGATCCTACTACTGGTCCTACTGTCGCAACCCTCGGTCCGGT
CCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGAAATGAACTCAGTATGCCTAAGCC
AACCCATGAAATGAGCGTACGGGCACTCACCCAGCCGAAGAGGCAGAATGCACAAGCCGAGGACC
GACCCGGTCCCCCCCGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCCAGTCCGATCTTAGA
CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGGGCTGAGCCAGCCA
GAGAGGCATAATGCGCAAGTCGAGGACCGACCAGATCCCCCTCTACGTGCTGTCGATCCCGCTAC
CACAACCCTCAGTCCGGCTAGG
Found at i:29892493 original size:26 final size:26
Alignment explanation
Indices: 29892464--29892536 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
29892454 TCTTAGATTG
*
29892464 GGAATGAACTCCATATGCTTAGGCAT
1 GGAATGAACTCCGTATGCTTAGGCAT
*
29892490 GGAATGAACTCTGTATGCTTAGGCAT
1 GGAATGAACTCCGTATGCTTAGGCAT
*
29892516 GGAATTAACTCCGTATGCTTA
1 GGAATGAACTCCGTATGCTTA
29892537 AGCCAACCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGGCAT
Found at i:29892744 original size:159 final size:158
Alignment explanation
Indices: 29892516--29892850 Score: 390
Period size: 159 Copynumber: 2.1 Consensus size: 158
29892506 GCTTAGGCAT
* * * * *
29892516 GGAATTAACTCCGTATGCTTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGTCGACCGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAA
* * * ** * **
29892581 AGGCAGAATACGCAAGCCGGGGATCGG-TCCGGTCCTCC-CTACTTGCTGTAGATCCTGCTGTCG
66 AGGCAGAATACACAAGCCGGAGATCGGCT-CGGTCC-CCTCTACGTGCTACAGATCCCGCTACCG
29892644 CAACCCTCAG-TCTGGTCCGATCTTAGACTG
129 CAACCCTCAGTTC-GGTCCGATCTTAGACTG
* * *
29892674 GGAAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGTGCTCAGCCGACC-GA
1 GG-AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGA
* * * *
29892738 AGAGGCAGAATGCATAAGCCGGAGATCGGCTCGTTCCCCTCTACGTGCTACCGATCCCGCTACCG
65 A-AGGCAGAATACACAAGCCGGAGATCGGCTCGGTCCCCTCTACGTGCTACAGATCCCGCTACCG
* *
29892803 CAACCCTCGGTTCGGTCTGATCTTAGACTG
129 CAACCCTCAGTTCGGTCCGATCTTAGACTG
*
29892833 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
29892851 TTAGACTGGG
Statistics
Matches: 148, Mismatches: 24, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
158 21 0.14
159 124 0.84
160 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAA
AGGCAGAATACACAAGCCGGAGATCGGCTCGGTCCCCTCTACGTGCTACAGATCCCGCTACCGCA
ACCCTCAGTTCGGTCCGATCTTAGACTG
Found at i:29892860 original size:26 final size:26
Alignment explanation
Indices: 29892824--29892876 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
29892814 TCGGTCTGAT
29892824 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29892850 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29892876 C
1 C
29892877 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29893592 original size:26 final size:26
Alignment explanation
Indices: 29893554--29893603 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29893544 GGCATAAACT
*
29893554 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29893580 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
29893604 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29893925 original size:26 final size:26
Alignment explanation
Indices: 29893896--29893948 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
29893886 CGGATTCGAT
29893896 CTTACACT-GGGAATGAACT-TCGTATG
1 CTTACACTGGGGAA-GAACTCT-GTATG
*
29893922 CTTAGACTGGGGAAGAACTCTGTATG
1 CTTACACTGGGGAAGAACTCTGTATG
29893948 C
1 C
29893949 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGGAAGAACTCTGTATG
Found at i:29894121 original size:26 final size:26
Alignment explanation
Indices: 29894092--29894141 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29894082 CCGGTCCAAT
29894092 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29894118 CTTAGACATGGATTGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
29894142 AGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29894438 original size:158 final size:158
Alignment explanation
Indices: 29894255--29894611 Score: 359
Period size: 158 Copynumber: 2.3 Consensus size: 158
29894245 CCTAATGCTG
* * * * * *
29894255 CAACCCTCGATCTGGTCTGATCTTAGAC-TGAGAATGCACTCCATATGCCTAAGTCAACCCATGA
1 CAACCCCCGATCTGGTCTGAGCTTAGACATG-GAATGAACTCCATATCCCTAAGCCAACCCACGA
* * * * * *
29894319 AACGAGCGT-TCGGGTG-TTGAGCCGATCGGAGATGCATAATACGTAGGTCGGGGATCGGC-CTG
65 AACGAGCGTAT-GGGTGCTT-AGCCGATCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCTG
* *
29894381 ATCCTCCTCTGCGTGTTGTCGATCCCGCTGCCA
128 -TCC-CCTCTGCGTGCTATCGATCCCGCTGCCA
* *
29894414 CAACCCCCGATCTGG-CTGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAA
1 CAACCCCCGATCTGGTCTGAGCTTAGACATGGAATGAACTCCATATCCCTAAGCCAACCCACGAA
* * * *
29894478 ACGGGTGTATGGGTGCTTAGCCGATTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCTGTCC
66 ACGAGCGTATGGGTGCTTAGCCGATCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCTGTCC
** * *
29894543 CCTCTGCGTGCTATCGATCCTACTACCG
131 CCTCTGCGTGCTATCGATCCCGCTGCCA
* * * *
29894571 CAACCCTCGATCCGAT-TCGATCTTAGAC-TGGAATGAACTCC
1 CAACCCCCGATCTGGTCT-GAGCTTAGACATGGAATGAACTCC
29894612 GTATGCTTAG
Statistics
Matches: 163, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
157 48 0.29
158 93 0.57
159 22 0.13
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.23
Consensus pattern (158 bp):
CAACCCCCGATCTGGTCTGAGCTTAGACATGGAATGAACTCCATATCCCTAAGCCAACCCACGAA
ACGAGCGTATGGGTGCTTAGCCGATCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCTGTCC
CCTCTGCGTGCTATCGATCCCGCTGCCA
Found at i:29894620 original size:25 final size:26
Alignment explanation
Indices: 29894592--29894643 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29894582 CCGATTCGAT
29894592 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29894617 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29894643 C
1 C
29894644 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29895000 original size:26 final size:26
Alignment explanation
Indices: 29894971--29895023 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29894961 CAAGTCTGAT
*
29894971 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
29894997 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29895023 C
1 C
29895024 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29895508 original size:26 final size:26
Alignment explanation
Indices: 29895472--29895524 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29895462 CCGGTCCGAT
29895472 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29895498 CTTAGACTGGGGATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29895524 C
1 C
29895525 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29896235 original size:26 final size:26
Alignment explanation
Indices: 29896197--29896249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29896187 GGCTCAAACT
*
29896197 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29896223 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29896249 C
1 C
29896250 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29896785 original size:26 final size:26
Alignment explanation
Indices: 29896746--29896801 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
29896736 CCGGTCTGAT
29896746 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
29896772 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
29896798 CTTA
1 CTTA
29896802 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:29897199 original size:159 final size:160
Alignment explanation
Indices: 29896771--29897201 Score: 406
Period size: 159 Copynumber: 2.7 Consensus size: 160
29896761 AACTCCATAT
* * *
29896771 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGTGTCCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTCCGGGCGCTCAG
* * * * ** * * **
29896836 -CTGACCGGAGAGGCAGAATGCGTAATTTGGGGATCGGCCCGGT-CCCCTCCTGCGTGCTGTCGA
66 CCAG-CCCGAGAGGCATAATGCATAAACTGGGGATCGACCCGGTCCCCCTCCTACGTGCTACCGA
* *
29896899 TCCTGCTACCACAACCCTTAGTCCGGTCTGA
130 TCCCGCTACCACAACCCTCAGTCCGGTCTGA
* * * * * * *
29896930 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAG-TCAACCCACGAAACGAACGTTCAGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTCCGGGCGCTC
* *** * * * * *
29896993 AGCCGGCTTAAGAGGCATAATGCACAAACTAGGGATCAACTCAGTCCCCCT-CTACGTGCTACCG
64 AGCCAGCCCGAGAGGCATAATGCATAAACTGGGGATCGACCCGGTCCCCCTCCTACGTGCTACCG
* * * *
29897057 GTCCCGCTGCCACAACCCTCAGTCTGG-CTAGG
129 ATCCCGCTACCACAACCCTCAGTCCGGTCT-GA
* * * * * *
29897089 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAATGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTCCGGGCGCTCAG
*
29897154 CCAGCCCGAGAGGCATAATGCATAAGCTGGGGATCGACCCGGTCCCCC
66 CCAGCCCGAGAGGCATAATGCATAAACTGGGGATCGACCCGGTCCCCC
29897202 CTGCATGCTG
Statistics
Matches: 210, Mismatches: 55, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
158 3 0.01
159 198 0.94
160 9 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTCCGGGCGCTCAG
CCAGCCCGAGAGGCATAATGCATAAACTGGGGATCGACCCGGTCCCCCTCCTACGTGCTACCGAT
CCCGCTACCACAACCCTCAGTCCGGTCTGA
Found at i:29897294 original size:26 final size:26
Alignment explanation
Indices: 29897250--29897302 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29897240 CTAGTTCGAT
*
29897250 CTTAGACTGGTAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
29897276 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29897302 C
1 C
29897303 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29898049 original size:159 final size:159
Alignment explanation
Indices: 29897656--29898071 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 159
29897646 ACTCTGTATG
*
29897656 CTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAAC-GAG-TGTGCAGGCGTTCA
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGAGCT-TGCAGGCGTTCA
** * ** * * * *
29897719 ACCGGTCGGGGAGGCAGAATGCACAAGCTGGGGACCGATCCGATCCCCCTCGCGTACTGTCGATC
65 ACCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCACGTACTGTCGATC
** * * *
29897784 TTGCTACTACAACCCTCGATCTGATCTGAT
130 CCGCTACCACAACCCTCGATCGGATCGGAT
* * * * * * *
29897814 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAT-AAAAAGAGCGTGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGAGCTTGCAGGCGTTCA
* * * * * *
29897877 GCC-AGCTGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTC-A
65 ACCGA-CCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTC-ACGTACTGTCGA
* * * * * *
29897940 GTCCCGTTGCCACAGCCCTCGGTTCGGCTGGGA-
128 -TCCCGCTACCACAACCCTC-GATCGGATCGGAT
*
29897973 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCTTGCAGGCGTTCAA
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGAGCTTGCAGGCGTTCAA
*
29898037 CCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATC
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATC
29898072 AGCCTGGTCC
Statistics
Matches: 201, Mismatches: 47, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 86 0.43
159 97 0.48
160 14 0.07
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGAGCTTGCAGGCGTTCAA
CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCACGTACTGTCGATCC
CGCTACCACAACCCTCGATCGGATCGGAT
Found at i:29899258 original size:159 final size:159
Alignment explanation
Indices: 29898842--29899259 Score: 474
Period size: 159 Copynumber: 2.6 Consensus size: 159
29898832 ACTCCATATA
*
29898842 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
29898907 CAGCCGGAGAGGTAGAATGCGCAAGTCAGGAATC-AGCCCGGTCCCCCTCTACATCCTGCTGATC
65 CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGGTCCCCCTCTACATCCTGCTGATC
**
29898971 CTGCTACCACAACCATCGGTTTGACTGAGG
130 CTGCTACCACAACCATCGGTCGGACTGAGG
* *
29899001 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCATGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGA-GCGTGCGGGCGCTCAG
* ** * * * * * * *
29899065 CAGATCGGAGAGGTAGAATACGCAAACCGAGGATCGA-CCTTGGT-CCCCTCTACGTGCT-ATCG
64 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCC-CGGTCCCCCTCTACATCCTGCT-G
* *
29899127 ATCCTGCTACCACAACCCTCGGTCCGGTA-TGA-T
127 ATCCTGCTACCACAACCATCGGT-CGG-ACTGAGG
* * *
29899160 CTTAGAC-TAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
29899224 CCGGCCGGAGAGGTAGAATGCCCAAGCCGGGGATCG
64 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCG
29899260 GCTCAGTCCC
Statistics
Matches: 216, Mismatches: 34, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
158 3 0.01
159 202 0.94
160 10 0.05
161 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGGTCCCCCTCTACATCCTGCTGATCC
TGCTACCACAACCATCGGTCGGACTGAGG
Found at i:29899368 original size:25 final size:26
Alignment explanation
Indices: 29899330--29899381 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
29899320 TTGGTCCAAT
29899330 CTTAGACTGAGAATG-ACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
29899355 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
29899381 C
1 C
29899382 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:29900775 original size:26 final size:26
Alignment explanation
Indices: 29900737--29900789 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29900727 GGCTCAAACT
**
29900737 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
29900763 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
29900789 C
1 C
29900790 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:29901054 original size:158 final size:158
Alignment explanation
Indices: 29900762--29901067 Score: 350
Period size: 158 Copynumber: 1.9 Consensus size: 158
29900752 AACTCCATAT
*
29900762 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* ** * *
29900827 CCAGCCGGAGACGTAGGATGCATAAGCCAAGGATCAACCCGATCCCCCTCTACGTGCTGTCGGTT
66 CCAGCCGGAGACGCAAAATGCATAAGCCAAGGATCAACCCGATCCCCCTCTACGTGCTGTCGATC
29900892 CTGCTGCCACAACCCTCGGTCTGACTGG
131 CTGCTGCCACAACCCTCGGTCTGACTGG
* * * **
29900920 GCTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAACGGGCGTG-AGGGTGCTC
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AAACGAGCGTGCA-GGCACTC
* * * ** *** * *
29900984 AGCCGGCCGGAGA-GACAAAATGCGTAAGTCGGGGATTGGCCCTG-TCCCCCT-TGCGTGCTGTT
64 AGCCAGCCGGAGACG-CAAAATGCATAAGCCAAGGATCAACCC-GATCCCCCTCTACGTGCTGTC
*
29901046 GATCCTGCTGCCGCAACCCTCG
127 GATCCTGCTGCCACAACCCTCG
29901068 ATCCAGTTCG
Statistics
Matches: 122, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
158 70 0.57
159 51 0.42
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
CCAGCCGGAGACGCAAAATGCATAAGCCAAGGATCAACCCGATCCCCCTCTACGTGCTGTCGATC
CTGCTGCCACAACCCTCGGTCTGACTGG
Found at i:29901116 original size:26 final size:26
Alignment explanation
Indices: 29901080--29901132 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29901070 CCAGTTCGAT
29901080 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29901106 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29901132 C
1 C
29901133 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29902902 original size:26 final size:26
Alignment explanation
Indices: 29902864--29902914 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
29902854 CTGGTCTGAT
* *
29902864 CTTAGACTAGGAATGAACTTCGTATA
1 CTTAGACTAGGAATAAACTCCGTATA
29902890 CTTAGAC-ATGGAATAAACTCCGTAT
1 CTTAGACTA-GGAATAAACTCCGTAT
29902915 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATA
Found at i:29903217 original size:158 final size:157
Alignment explanation
Indices: 29902890--29903231 Score: 422
Period size: 157 Copynumber: 2.2 Consensus size: 157
29902880 ACTTCGTATA
* * * **
29902890 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATTCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATTCGGGCACTCAG
* * *
29902954 CCGATCAGAGAGGTAGAATGCGCAAGCAGGGGATCGACCGGTCCCTCCTACGTGCTGTCGATCCT
65 CAGATCAGAAAGGCAGAATGCGCAAGCAGGGGATCGACCGGTCCCTCCTACGTGCTGTCGATCCT
* *
29903019 GCTGCCACAACCCTTGGTCTGATCCGAT
130 ACTGCCACAACCCTCGGTCTGATCCGAT
* * * * *
29903047 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCATTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATTCGGGCACTCAG-
* * * * *
29903112 CAG-TCAGAAAGGCATAATGTGCAAGCCGGGGATCGGCCAGGTCCC-CTCTGCGTGCTGTCGATC
65 CAGATCAGAAAGGCAGAATGCGCAAGCAGGGGATCGACC-GGTCCCTC-CTACGTGCTGTCGATC
*
29903175 CTACTGTCACAACCCTCGGT-TCGATCCGAT
128 CTACTGCCACAACCCTCGGTCT-GATCCGAT
29903205 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
29903232 TTAGACTGGG
Statistics
Matches: 158, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
156 1 0.01
157 83 0.53
158 74 0.47
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATTCGGGCACTCAGC
AGATCAGAAAGGCAGAATGCGCAAGCAGGGGATCGACCGGTCCCTCCTACGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCTGATCCGAT
Found at i:29903234 original size:26 final size:26
Alignment explanation
Indices: 29903205--29903257 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29903195 TCGATCCGAT
29903205 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29903231 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29903257 C
1 C
29903258 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29903524 original size:550 final size:550
Alignment explanation
Indices: 29902325--29903638 Score: 1415
Period size: 550 Copynumber: 2.4 Consensus size: 550
29902315 NNNNNNNNNN
* * * *
29902325 TGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCAA
1 TGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAT
* * * * * * * * *
29902390 GCGGGCACTAAGTGGGCCAGAGAGGTAGAATGCACAAGCCGGGGATTGGCTCGGTCCCCCTCTGC
66 GTGGGCGCTCAGTAGACCAGAGAGGTAGAATGCACAAGCAGGGGATCGAC-CGGTCCCTC-CTGC
* * * **
29902455 GTGCTGCCGGT-CTCGCTGCCACAACCCTTGGTCTGA-CTGGGGCTTAGACAT-GGAATGAACTC
129 GTGCTGTCGATCCT-GCTGCCACAACCCTTGGTCTGATC-CGATCTTAGAC-TGGGAATGAACTC
* * * * * * * *
29902517 CCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAATCGGAGAGGCAGAATGC
191 CGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAATCAGAAAGGCAGAATGC
* * * **
29902582 GTAAGCCAGGGATCGGCCCGGTCCCCCTTACGTGCTGCCGATCCTGCTACCGTAACCCTCGATCT
256 GCAAGCCAGGGATCGGCCAGGTCCCCCTTACGTGCTGCCGATCCTACTACCACAACCCTCGATCT
* ** * * *
29902647 GGTTTGATCTTAGACTAGGAATGAAATCCGTATGCTTAGATTGAGGATTAACTCTGTATGCCTAA
321 GATCCGATCTTAGACTAGGAATGAAATCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAA
** * * *
29902712 GTCAACCCACGAAACGAGCGTGCAGGCACTCAGTCGGTCGGAGAGGCCGGCCAGAGAGGCAGAAT
386 GTCAACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGGCCAGAGAGGCAGAAT
* * * * * * * * * *
29902777 ATGTAAACTGGGGATCGATCCGATCCCCCCTGGATGCTGCTGATCTTGCTACTGGTCCTGCTATG
451 ATGCAAACCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTCCTACTAGTCCTGCTATG
* *
29902842 ATAACCCTCGGTCTGGTCTGATCTTAGACTAGGAA
516 ATAACCCTCGGTCCGATCTGATCTTAGACTAGGAA
* *
29902877 TGAACTTCGTATACTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAT
1 TGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAT
* ** * * *
29902942 -TCGGGTGCTCAGCCGATCAGAGAGGTAGAATGCGCAAGCAGGGGATCGACCGGTCCCTCCTACG
66 GT-GGGCGCTCAGTAGACCAGAGAGGTAGAATGCACAAGCAGGGGATCGACCGGTCCCTCCTGCG
*
29903006 TGCTGTCGATCCTGCTGCCACAACCCTTGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTA
130 TGCTGTCGATCCTGCTGCCACAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
29903071 TGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCATTGAGTCAGTCAGAAAGGCATAATGTGCAA
195 TGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAATCAGAAAGGCAGAATGCGCAA
* * * ** *
29903136 GCCGGGGATCGGCCAGGT-CCCCTCTGCGTGCTGTCGATCCTACTGTCACAACCCTCGGT-TCGA
260 GCCAGGGATCGGCCAGGTCCCCCT-TACGTGCTGCCGATCCTACTACCACAACCCTCGATCT-GA
* * *
29903199 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
323 TCCGATCTTAGACTAGGAATGAAATCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGT
* ** * *
29903264 CAACCCATGAAACGAGCGTGTGGGCACTCAACCGGCCAGAGAGGCAGG-CTGAGGAGGCA-TA-A
388 CAACCCACGAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGGCCAGA-GAGGCAGAATA
* * * * *
29903326 TGCACAAGCCGAGGATTGGCCCGGTCCCTCCTGCATGCTACCGATCCTCCTACTAGTCCTGTTAT
452 TGCA-AA-CCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTCCTACTAGTCCTGCTAT
*
29903391 CG-TAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
515 -GATAACCCTCGGTCCGATCTGATCTTAGACTAGGAA
* * * * **
29903427 TGAACTTCGTATGCTTAGATATGTAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGTGT
1 TGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAT
* * * * * * *
29903492 GTGGGCGCTCAGTAGACCGGAGAGGCAGAATGCACAAGCGGGGGATTGGCCCGATCCCTTCTTGC
66 GTGGGCGCTCAGTAGACCAGAGAGGTAGAATGCACAAGCAGGGGA-TCGACCGGTCCC-TCCTGC
* * * ** * * *
29903557 GTCCTGTTGATCCTGCTACCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGT
129 GTGCTGTCGATCCTGCTGCCACAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGT
* *
29903622 ATGCCTAATTCATCCCA
194 ATGCCTAAGTCAACCCA
29903639 TGGAACAAGC
Statistics
Matches: 628, Mismatches: 121, Indels: 26
0.81 0.16 0.03
Matches are distributed among these distances:
548 4 0.01
549 13 0.02
550 418 0.67
551 22 0.04
552 171 0.27
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (550 bp):
TGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAT
GTGGGCGCTCAGTAGACCAGAGAGGTAGAATGCACAAGCAGGGGATCGACCGGTCCCTCCTGCGT
GCTGTCGATCCTGCTGCCACAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAATCAGAAAGGCAGAATGCGCAAG
CCAGGGATCGGCCAGGTCCCCCTTACGTGCTGCCGATCCTACTACCACAACCCTCGATCTGATCC
GATCTTAGACTAGGAATGAAATCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGGCCAGAGAGGCAGAATATGCA
AACCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTCCTACTAGTCCTGCTATGATAAC
CCTCGGTCCGATCTGATCTTAGACTAGGAA
Found at i:29903849 original size:159 final size:158
Alignment explanation
Indices: 29903439--29903942 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 158
29903429 AACTTCGTAT
* * * *
29903439 GCTTAGATATGTAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGT-CGGGCGCTCAG
* * * * * *
29903504 TAGACCGGAGAGGCAGAATGCACAAGCGGGGGATTGGCCCGATCCCTTCTTGCGTCCTGTTGATC
65 TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCTTCTTGCGTCCTATCGATC
**
29903569 CTGCTACCGTAACCCTCGGTCTGATCTGA
130 CTGCTACCCCAACCCTCGGTCTGATCTGA
* ** * * *
29903598 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAATTCATCCCATGGAACAAGCA-TG-CGGGCGCT
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCA-CGAA-ATG-AGTGTCGGGCGCT
* * * * * * * *
29903660 GAGCCAGCTGGAGAGGCATAATGCATAAGCCGAGGATCGGCCCGATCCC-TCTCTGCGTGCTATC
62 CAGTCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCTTCT-TGCGTCCTATC
* *
29903724 GATGCTGCTACCCCAACCCTCGGTCTGA-CTGGG
126 GATCCTGCTACCCCAACCCTCGGTCTGATCT-GA
* ** * *
29903757 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGT-CGGGCGCTCAG
* * * * * * * * * *
29903822 TCGGCCGAAGAAGCAGAATGAACAAGCCGGGGATCAGTCTGGTCCC-CCTTGCGTGCTGTCGATC
65 TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCTTCTTGCGTCCTATCGATC
* * * * *
29903886 TTGCTGCCGCAACCCTTGGTCCGATCTGA
130 CTGCTACCCCAACCCTCGGTCTGATCTGA
* *
29903915 TCTTAGAC-TGGGAAGGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
29903943 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 63 0.24
159 190 0.71
160 3 0.01
161 4 0.02
162 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTCGGGCGCTCAGT
CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCTTCTTGCGTCCTATCGATCC
TGCTACCCCAACCCTCGGTCTGATCTGA
Found at i:29903945 original size:26 final size:26
Alignment explanation
Indices: 29903916--29903968 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29903906 CCGATCTGAT
29903916 CTTAGACTGGGAAGGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCTGTATG
* *
29903942 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCTGTATG
29903968 C
1 C
29903969 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCTGTATG
Found at i:29905325 original size:342 final size:342
Alignment explanation
Indices: 29904626--29905336 Score: 722
Period size: 342 Copynumber: 2.1 Consensus size: 342
29904616 GGCTCAAACT
* * *
29904626 CTTAGACTGGGAGTGATCTCCATATGCTTGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 CTTAGACTAGGAATGAACTCCATATGCTTGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * *
29904691 CAAAACGAGCGTGCGGGTGCTCAGTCGGTCGAAGAGGTAGAATGCACAAGCCGGGGATCGACTCG
66 CAAAACGAGCGTACGGGTGCTCAGTCCGACGAAGAGGCAGAATGCACAAGCCGGGGATCGACTCG
* * * * * *
29904756 ATCCCCCTCTGCATGTTGTCGGTCCCACTGCCACAACCCTTGGTCTAGCTGGGGCTTCAACATGG
131 ATCCCCCTCTACATGCTGTCAGTCCCACTGCCACAACCCTCGATCCAGCTGGGGCTTCAACATGG
* ** * * * *
29904821 AATGAACTCCCTCTGCCTAAGCCAACCCGTGAAACAGGTGTGCGGGCGCTTAGTCGGCTAGAGAG
196 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTGAGCCGACTAGAGAA
* ** * * ** *
29904886 GCAGAATGCGTAAGCCGGGGATTGCCCCGGTCCCTCCTGCATCTTGCCAATCCTGCTACCACAAC
261 GCAGAATGCGCAAGCCAAGGATCGACCCAATCCCTCCTACATCTTGCCAATCCTGCTACCACAAC
* * * *
29904951 CCTCAGTCTGGTTCGAT
326 CCTCAGTCCGGCTAGAG
* * *
29904968 ATTTGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
1 CTTAGACTAGGAATGAACTCCATATGCTT-GACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
29905033 ACGAAATGAGCGTACGGGTGCTCAG-CCGACGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTT
65 ACAAAACGAGCGTACGGGTGCTCAGTCCGACGAAGAGGCAGAATGCACAAGCCGGGGATCGACTC
* * * * * *
29905097 GGTCCCCCT-TACGTGCTGTCAGTCCTACTGCCGCAACCCTCGATCCAGTCT-GGTCTT-AGA-T
130 GATCCCCCTCTACATGCTGTCAGTCCCACTGCCACAACCCTCGATCCAG-CTGGGGCTTCA-ACA
* * * *
29905158 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT-T-CGGGTGCTGAGCCGACT
193 T-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-CAG-GTGTGCGGGCGCTGAGCCGACT
* * * * * * **
29905221 GGAGAATCATAATGCGCAAGCCAAGGATCGACTCAATCCCTCTCTACGTGC-TGTCGGT-CTCGC
255 AGAGAAGCAGAATGCGCAAGCCAAGGATCGACCCAATCCCTC-CTACAT-CTTGCCAATCCT-GC
*
29905284 TACCACAACCCTCAGTCCGGCTAGGG
317 TACCACAACCCTCAGTCCGGCTAGAG
*
29905310 CTTAGAC-ATGGAATGAACTCCCTATGC
1 CTTAGACTA-GGAATGAACTCCATATGC
29905337 CTAAGCCAAC
Statistics
Matches: 297, Mismatches: 62, Indels: 20
0.78 0.16 0.05
Matches are distributed among these distances:
340 2 0.01
341 113 0.38
342 123 0.41
343 59 0.20
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (342 bp):
CTTAGACTAGGAATGAACTCCATATGCTTGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CAAAACGAGCGTACGGGTGCTCAGTCCGACGAAGAGGCAGAATGCACAAGCCGGGGATCGACTCG
ATCCCCCTCTACATGCTGTCAGTCCCACTGCCACAACCCTCGATCCAGCTGGGGCTTCAACATGG
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTGAGCCGACTAGAGAA
GCAGAATGCGCAAGCCAAGGATCGACCCAATCCCTCCTACATCTTGCCAATCCTGCTACCACAAC
CCTCAGTCCGGCTAGAG
Found at i:29905420 original size:159 final size:157
Alignment explanation
Indices: 29904993--29905421 Score: 470
Period size: 159 Copynumber: 2.7 Consensus size: 157
29904983 AACTCCATAT
*
29904993 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
* * * * * *
29905058 CCGACGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTTGGTCCCCCTTACGTGCTGTCAGTCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCTCTTACGTGCTGTCAGTCCT
* * *
29905123 ACTGCCGCAACCCTCGATCCAGTCTGG
131 ACTACCACAACCCTCGATCCAGGCTGG
* * * * *
29905150 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCA
* * ** * * * ** *
29905214 GCCGACTGGAGAATCATAATGCGCAAGCCAAGGATCGACTCAATCCCTCTCTACGTGCTGTCGGT
65 G-CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCTCT-TACGTGCTGTCAGT
*
29905279 -CTCGCTACCACAACCCTC-AGTCC-GGCTAGG
128 CCT-ACTACCACAACCCTCGA-TCCAGGCT-GG
* * * * *
29905309 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
* *
29905374 TTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGGTCCCTC
66 -CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCTC
29905422 CTGCATGCTA
Statistics
Matches: 217, Mismatches: 48, Indels: 12
0.78 0.17 0.04
Matches are distributed among these distances:
156 1 0.00
157 57 0.26
158 39 0.18
159 119 0.55
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCTCTTACGTGCTGTCAGTCCT
ACTACCACAACCCTCGATCCAGGCTGG
Found at i:29905518 original size:26 final size:26
Alignment explanation
Indices: 29905480--29905532 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29905470 ATGATTCGAT
29905480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29905506 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29905532 C
1 C
29905533 AAAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29905852 original size:26 final size:26
Alignment explanation
Indices: 29905823--29905873 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29905813 CTGATCGATC
*
29905823 TTAGACTGCGAATGAACTCTGTATGG
1 TTAGACTGCGAATGAACTCCGTATGG
* *
29905849 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGCGAATGAACTCCGTATG
29905874 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGG
Found at i:29906290 original size:364 final size:360
Alignment explanation
Indices: 29905286--29906568 Score: 1127
Period size: 364 Copynumber: 3.6 Consensus size: 360
29905276 GGTCTCGCTA
29905286 CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * ** * *
29905351 GAAACGGGCATACGGGCGCTCAGTTGGCCGGAGAGGCAGAATGCGTAAGCC-GAGGATCGGCTCG
66 AAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGC--AATGCGCAAGCCAG-GGATCGGCTCG
* * * * * * * *
29905415 GTCCCTCCTGCATGCTATCGATCCTGCTGCTGGTCATGCTACCGCAACCTTCGGTATGATTCGAT
128 GTCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTACTGCAACCCTCGGT-CGATTCGAT
** *
29905480 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCAAAAGTCAACCT
192 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * *
29905545 ATGAAACGAGCGTGCGGGCGCTGAGCCGATCGAACTGGCATAATGCGTAAGCCGGGGATCACCCC
257 ATGAAACGAGCGTGCGGGCACTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCC
* * * *
29905610 GAT---CCT-C-C-T-CT-ACGTGCTGCCGATCCCGCTG
322 GGTCCCCCTCCGCATGCTGTCGTACTGCCGATCCTGCTG
* * *
29905641 CCACATA-CCTCGGTCCGGCTAGGGCTTAGTCATGGAATGAACTCCCTATGCCTAAGCCATCCCA
1 CCACA-ACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * **
29905705 CGAAACGGGCGTGCGGGCACTCAGTCGATTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCG
65 CAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGC--AATGCGCAAGCCAGGGATCGGCTCG
* * * * * * *
29905770 GT-----CTAC--CCTA-CG----TGCAGCTGATCCTACT-GTCGCAACCTTTGGTCTGA-TCGA
128 GTCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTACT-GCAACCCTCGGTC-GATTCGA
* * * *
29905821 TCTTAGACTGCGAATGAACTCTGTATGGTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
191 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
29905885 CCATGAAATGAGCGTGCGGGCACTCAGCCG-GCCAGAGAGGCATAATGGGCAAGTCGGGGATCAG
255 CCATGAAACGAGCGTGCGGGCACTCAGCCGATCGA-AGAGGCATAATGCGCAAGCCGGGGATCAG
*
29905949 CCCGGTCCCCCTCCGCATGCTGTCGATCCCACTGCCGATCCTACTG
319 CCCGGTCCCCCTCCGCATGCTGTCG-T---ACTGCCGATCCTGCTG
* *
29905995 CCACAACCCTCAGTCCGGCT-GGGACTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCAGTCCGGCTAGGG-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * *
29906059 CAAAATGAGCGTGCGGGTGCCCAACCGATCGGAGAGGC-A-GCGTAAGCCAGGGATCAGCTCGGT
65 CAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAATGCGCAAGCCAGGGATCGGCTCGGT
* * *
29906122 CCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTGCTGCAACCCTCAGCTCGGTTCGATC
130 -CCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTACTGCAACCCTC-GGTCGATTCGATC
* ** *
29906187 TTATACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTAAGTATGCCTAAGCCAACCCA
193 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
29906252 TGAAACGAGCGTGCGGGCACTCAACCGATCGAAGAGGCAAAATACGCAAGCCGAGGATC-GATCC
258 TGAAACGAGCGTGCGGGCACTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAG-CCC
29906316 GGTCTCCCC-CCGCATGCTGTCG-A-T--C--T--TGCTG
322 GGTC-CCCCTCCGCATGCTGTCGTACTGCCGATCCTGCTG
* * * * ** * *
29906347 CCACAACCCTCGGTTCAG-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAACCAACCC
1 CCACAACCCTCAGTCCGGCT-AGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * * * **
29906410 ACAAAATGAGCGTGTGGGTGCTCAGCCGGCCAGAGAGGTAGAATGCGCAAACTGGGGATCGGCTC
64 ACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG--CAATGCGCAAGCCAGGGATCGGCTC
* * ** * * *
29906475 GGTCCCCCCTTGCGTGCTGCCGATCCTGCTGCTGGTCTTGTTATTGCAACGCTCGGTTCGATCCG
127 GGTCCCCCC-TGCGTGCTACCGATCCTGCTGCTGGTCCTACTACTGCAACCCTCGG-TCGATTCG
* *
29906540 ATCTTATACTGGGAATGAACTCTGTATGC
190 ATCTTAGACTGGGAATGAACTCCGTATGC
29906569 CTAAGCCAAC
Statistics
Matches: 761, Mismatches: 118, Indels: 97
0.78 0.12 0.10
Matches are distributed among these distances:
341 3 0.00
342 114 0.15
343 25 0.03
345 3 0.00
346 1 0.00
347 3 0.00
348 4 0.01
349 2 0.00
350 27 0.04
351 4 0.01
352 86 0.11
353 5 0.01
354 96 0.13
355 124 0.16
356 96 0.13
358 4 0.01
359 3 0.00
363 23 0.03
364 131 0.17
365 7 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (360 bp):
CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAATGCGCAAGCCAGGGATCGGCTCGGTC
CCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTACTGCAACCCTCGGTCGATTCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
AACGAGCGTGCGGGCACTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTC
CCCCTCCGCATGCTGTCGTACTGCCGATCCTGCTG
Found at i:29907084 original size:184 final size:184
Alignment explanation
Indices: 29906768--29907107 Score: 497
Period size: 184 Copynumber: 1.8 Consensus size: 184
29906758 CACTCAGCCA
** * *
29906768 AAGCCAACCCATGAAACGGGCATGCGGGTGCTCAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAG
1 AAGCCAACCCATGAAACGAACATGCGAGCGCTCAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAG
*
29906833 GGATCAGCTCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGGTCGGTCCGATC
66 GGATCAGCTCAGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGGTCGGTCCGATC
29906898 TTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCT
131 TTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCT
*
29906952 AAGCCAACCCATGAAACGAACATGCGAGCGCTCAGCCAGTCGGAGAGGCAGAATGCA-CAAGCCG
1 AAGCCAACCCATGAAACGAACATGCGAGCGCTCAGCCAGTCGGAGAGGCAGAATG-AGCAAGCCA
** * * ** * *
29907016 GGGATGGGCTC-GATCCCCCCTATGTGTTGTCGATCCTGCTGTTGCAACCCT-TGGTCCGGTCTG
65 GGGATCAGCTCAG-TCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGGT-CGGTCCG
*
29907079 ATCTTAGATTGGGAATGAACTCCGTATGC
128 ATCTTAGACTGGGAATGAACTCCGTATGC
29907108 CTAAGTCAAC
Statistics
Matches: 138, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
183 4 0.03
184 133 0.96
185 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (184 bp):
AAGCCAACCCATGAAACGAACATGCGAGCGCTCAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAG
GGATCAGCTCAGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGGTCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCT
Found at i:29908702 original size:26 final size:26
Alignment explanation
Indices: 29908673--29908723 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29908663 CTGGTCCGAT
29908673 CTTAGAC-TGGGAATGAACTCCGTATA
1 CTTAGACAT-GGAATGAACTCCGTATA
29908699 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
29908724 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:29914902 original size:26 final size:26
Alignment explanation
Indices: 29914866--29914918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29914856 TCAATCTGAT
*
29914866 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29914892 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29914918 C
1 C
29914919 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29916012 original size:170 final size:170
Alignment explanation
Indices: 29915759--29916138 Score: 397
Period size: 170 Copynumber: 2.2 Consensus size: 170
29915749 CGTAAGTTGG
* * * * * * * *
29915759 GGATCAGCCCGGTCCCCCTTTACTTGCTATCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCG
1 GGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGGACCTGCTGCCACAACCCTCA
* * * *
29915824 GTCCGACTGGGGCTTAGACAT-GGAACGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGT
65 GTCCGACTGGAGCTTAGAC-TGGGAACGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGT
* ** * * *
29915888 ACATGTGCTCAACCGGCC-GAAGAGGTAGAATGCGCAAGCCGA
129 ACAGGCACTCAACCGGCCAG-AGAAGCAGAACGCGCAAGCCGA
* * **
29915930 GGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTGCTGGACCTGCTGCCGTAACCCTCAG
1 GGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGGACCTGCTGCCACAACCCTCAG
* * * *
29915995 TCCAGTCT-GATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTG
66 TCC-GACTGGAGCTTAGACTGGGAACGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTA
* * * *
29916059 CGGGCACTCAGCCGGTCAGAGAAGCAGAACGCGCAAGCCGG
130 CAGGCACTCAACCGGCCAGAGAAGCAGAACGCGCAAGCCGA
* ** *
29916100 GGATTGGTTCGGTCCCCCCTGTGTGCTGTCGATCCTGCT
1 GGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCT
29916139 ACCGCAACCC
Statistics
Matches: 171, Mismatches: 35, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
169 1 0.01
170 150 0.88
171 20 0.12
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (170 bp):
GGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGGACCTGCTGCCACAACCCTCAG
TCCGACTGGAGCTTAGACTGGGAACGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTAC
AGGCACTCAACCGGCCAGAGAAGCAGAACGCGCAAGCCGA
Found at i:29916259 original size:158 final size:157
Alignment explanation
Indices: 29915986--29916665 Score: 605
Period size: 158 Copynumber: 4.3 Consensus size: 157
29915976 CTGCTGCCGT
* * * * *
29915986 AACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAA
1 AACCCTCGGTCC-GTCCGATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * ** *
29916051 CGAGCGTGCGGGCACTCAGCCGGTCAGAGAAGCAGAACGCGCAAGCCGGGGATTGGTTCGGTCCC
65 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCC
* * *
29916116 CCCTGTGTGCTGTCGATCCTGCTACCGC
130 CCCTGCGTGCTGTCGATCCCGCTACCAC
** * * *
29916144 AACCCTCGGTTTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
1 AACCCTCGGTCCG-TCCGATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * * *
29916209 AGAGCGTGCGGGCGTTGAGCCAGCCGGAGAGGCATAATGCACAAGTCGGGGATCGGCTCGATCCC
65 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCC
** * * * * **
29916274 TTCGGCATACTGTCGGTCCCGCTGTCAC
130 CCCTGCGTGCTGTCGATCCCGCTACCAC
* * * ** *
29916302 AACCCTCAGTCCGGCTGGGGCTTGGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
1 AACCCTCGGTCCGTC-CGATCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * *
29916366 ATGGGCGTGCGGGCGCTCAGCCAACCAGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCC
64 ACGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCC
* * *
29916431 CCCTCTGAGTGC-GATCGGTCCCACTACCAC
129 CCC-CTGCGTGCTG-TCGATCCCGCTACCAC
** *
29916461 AACCCTCGGTCCG-CCTGGGGCTTAGAC-ATGGAATAAACTCCCTATGCCTAAGCCAACCCACGA
1 AACCCTCGGTCCGTCC--GATCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * * * *
29916524 AACGGGCATGCGGGCGCTCAACC-GACCGGAGAGGCAAAATGCTCAAGCCGAGGATCGACACGGT
63 AACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGAT
* *
29916588 CCCCCCTGCGTGCTGTCGATCCTGCTACCGC
127 CCCCCCTGCGTGCTGTCGATCCCGCTACCAC
* *
29916619 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCG-TCCGATCTTAGACTAGGAATGAACTCCCTATGC
29916666 TTAGATCGGG
Statistics
Matches: 418, Mismatches: 92, Indels: 24
0.78 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 283 0.68
159 130 0.31
160 2 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
AACCCTCGGTCCGTCCGATCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCC
CCTGCGTGCTGTCGATCCCGCTACCAC
Found at i:29916654 original size:317 final size:316
Alignment explanation
Indices: 29915812--29916665 Score: 797
Period size: 317 Copynumber: 2.7 Consensus size: 316
29915802 GGTCCTGCTG
* *
29915812 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAACGAACTCCATATGCCTAAGTCAACCCAT
1 CCACAACCCTCGGTCCGCCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCAT
* ** * * * * * * *
29915877 GAAACGAGCGTACATGTGCTCAACCGGCCGAAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGG
66 GAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGGCACGG
*
29915942 TCCCTCCTGCGTGCTGTCGATCCTGCTGCTGGACCTGCTGCCGTAACCCTCAGTCC-AGTCTGAT
131 TCCCTCCTGCGTGCTGTCGAT-C--CTGCT--A-C--C-G-C--AACCCTCAGTCCGA-TCCGAT
29916006 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
183 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
*** * *** * * *
29916071 CGGTCAGAGAAGCAGAACGCGCAAGCCGGGGATTGGTTCGGTCCCCCCTGTGTGCTGTCGATCCT
248 CAACCAGAGAAGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGAGTGCTGTCGATCCC
*
29916136 GCTA
313 ACTA
* ** ** *
29916140 CCGCAACCCTCGGTTTGATCC--GATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACC
1 CCACAACCCTCGGTCCG--CCTGGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACC
* * * * * * *
29916202 CATGAAAAGAGCGTGCGGGCGTTGAGCC-AGCCGGAGAGGCATAATGCACAAGTCGGGGATCGGC
63 CATGAAACGAGCGTGCGGGCGCTCAACCGA-CCGGAGAGGCAAAATGCACAAGCCGAGGATCGGC
* * * * * * * * ** * * * ** *
29916266 TCGATCCCTTCGGCATACTGTCGGTCCCGCTGTCACAACCCTCAGTCCG-GCTGGGGCTTGGACA
127 ACGGTCCCTCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGATC-CGATCTTAGAC-
* * * * *
29916330 T-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCAACCAG
190 TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCAG
* * * * *
29916394 AGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGAGTGC-GATCGGTCCCACTA
255 AGAAGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGAGTGCTG-TCGATCCCACTA
* * * *
29916457 CCACAACCCTCGGTCCGCCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGCCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCAT
* * * *
29916522 GAAACGGGCATGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCTCAAGCCGAGGATCGACACGG
66 GAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGGCACGG
* *
29916587 TCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
131 TCCCTCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAA
*
29916652 TGAACTCCGTATGC
196 TGAACTCCATATGC
29916666 TTAGATCGGG
Statistics
Matches: 412, Mismatches: 99, Indels: 41
0.75 0.18 0.07
Matches are distributed among these distances:
315 3 0.01
316 107 0.26
317 175 0.42
318 4 0.01
320 1 0.00
325 4 0.01
327 2 0.00
328 115 0.28
330 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (316 bp):
CCACAACCCTCGGTCCGCCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCAT
GAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAGGATCGGCACGG
TCCCTCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAA
TGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCAGAGAAGC
AGAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGAGTGCTGTCGATCCCACTA
Found at i:29916668 original size:26 final size:26
Alignment explanation
Indices: 29916639--29916691 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29916629 CCGATCCGAT
*
29916639 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATGAACTCCATATG
*
29916665 CTTAGATCGGGGATGAACTCCATATG
1 CTTAGATCGGGAATGAACTCCATATG
29916691 C
1 C
29916692 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCATATG
Found at i:29917570 original size:26 final size:26
Alignment explanation
Indices: 29917532--29917584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29917522 GGCTCAAAAT
*
29917532 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29917558 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29917584 C
1 C
29917585 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29918059 original size:158 final size:157
Alignment explanation
Indices: 29917558--29918059 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 157
29917548 ACTCTGTATG
** ** *
29917558 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATGCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTCAAC
* * *
29917623 TGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCTGGTCCCCC-CTGTATGCTGTCGATCC
66 TGGCCGAAGAGGCAGAATTCGCAAGTTGGGGATCAGCC-GGTCCCCCTCT-CATGCTGTCGATCC
* * * ** ***
29917687 TACTGCCACAACCCTCAGTTTGGTATAAT
129 TGCTACCACAACCCTCGGTCCGGTCCGAT
* * * * * *
29917716 CTTAGAC-TGGGAATGAACTCCGTTTGCATAAGTCAACCCATAAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTCAA
* * * *** * * *
29917780 CCGGCCGAAGAGGCATAATGT-GCAAATCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGGT
65 CTGGCCGAAGAGGCAGAAT-TCGCAAGTTGGGGATCAG-CCGGTCCCCCTCT-CATGCTGTCGAT
* * * **
29917844 CCCGCTACCACAACCCTCGATCCGG-CTGGGG
127 CCTGCTACCACAACCCTCGGTCCGGTC-CGAT
* *
29917875 CTTAGACATGGAATGAACTACC-TATGCCTAAGCCAACCCAAAAAATGGGCGTGCGGGCGCTCAA
1 CTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTCAA
* * * * * *
29917939 CTGACCGGAGAGGCAGAATTCGTAAGTTGGGGATCGGCTCGGTCTACCCT-TCATGCTATCGATC
65 CTGGCCGAAGAGGCAGAATTCGCAAGTTGGGGATCAGC-CGGTC-CCCCTCTCATGCTGTCGATC
* *
29918003 TTGCTATCACAACCCTCGGTCCGGTCCGAT
128 CTGCTACCACAACCCTCGGTCCGGTCCGAT
29918033 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29918060 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 64, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 142 0.53
159 114 0.43
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGCGGGCGCTCAAC
TGGCCGAAGAGGCAGAATTCGCAAGTTGGGGATCAGCCGGTCCCCCTCTCATGCTGTCGATCCTG
CTACCACAACCCTCGGTCCGGTCCGAT
Found at i:29918062 original size:26 final size:26
Alignment explanation
Indices: 29918033--29918085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29918023 CCGGTCCGAT
*
29918033 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29918059 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29918085 C
1 C
29918086 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29918229 original size:343 final size:343
Alignment explanation
Indices: 29917716--29918451 Score: 931
Period size: 343 Copynumber: 2.1 Consensus size: 343
29917706 TTGGTATAAT
* * * *
29917716 CTTAGACTGGGAATGAACTCCGTTTGCATAAGTCAACCCATAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
* * * *
29917781 CGGCCGAAGAGGCATAATGTGCAAATCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CGGCCGAAGAGGCATAATGCGCAAACCAAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGATCC
* * *
29917846 CGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAA
131 CACTACCACAACCCTCGATCCGACTGGGGCATAGACATGGAATGAACTACCTATGCCTAAGCCAA
* * * * * ***
29917911 CCCAAAAAATGGGCGTGCGGGCGCTCAACT-GACCGGAGAGGCAGAATTCGTAAGTTGGGGATCG
196 CCCAAAAAACGGGCGTGCGAGCGCTC-ACTCGACCGAAAAGGCAGAATGCGTAAGCCAGGGATCG
** * * * * * * *
29917975 G-CTCGGTCTACCCTTCATGCTATCGATCTTGCTATCACAACCCTCGGTCCGGTCCGATCTTAGA
260 GCCT-GACCCACCCTGCATGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCCGATCTTAGA
29918039 CTGGGAATGAACTCCGTATG
324 CTGGGAATGAACTCCGTATG
* * * *
29918059 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAGAAC-AGGCGTGTGGGCGTTGAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA-GCGTGCGGGCGCTGAG
* * * * *
29918123 CCGGCCGAAGAGGCATAATGCGTAAGCCGAGGATC-GACTCGGTCCCTCTCTGCATGCTGCCGAT
65 CCGGCCGAAGAGGCATAATGCGCAAACCAAGGATCAG-CCCGGTCCCCCTCTGCATGCTGCCGAT
* *
29918187 CCCACTACCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCACTACCACAACCCTCGATCCGACTGGGGCATAGACATGGAATGAACTACCTATGCCTAAGCC
** * *
29918252 AACCCATGAAACGGGTGTGCGAGCGCTCAGTCGACCGAAAAGGCAGAATGCGTAAGCCAGGGATC
194 AACCCAAAAAACGGGCGTGCGAGCGCTCACTCGACCGAAAAGGCAGAATGCGTAAGCCAGGGATC
* * * ** * **
29918317 GGCCTGACCCCCCCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGATCTAGTTTGATCTTAGA
259 GGCCTGACCCACCCTGCATGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCCGATCTTAGA
29918382 CTGGGAATGAACTCCGTATG
324 CTGGGAATGAACTCCGTATG
* *
29918402 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
29918452 ATACGAACGC
Statistics
Matches: 333, Mismatches: 55, Indels: 10
0.84 0.14 0.03
Matches are distributed among these distances:
342 4 0.01
343 326 0.98
344 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
CGGCCGAAGAGGCATAATGCGCAAACCAAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGATCC
CACTACCACAACCCTCGATCCGACTGGGGCATAGACATGGAATGAACTACCTATGCCTAAGCCAA
CCCAAAAAACGGGCGTGCGAGCGCTCACTCGACCGAAAAGGCAGAATGCGTAAGCCAGGGATCGG
CCTGACCCACCCTGCATGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCCGATCTTAGACT
GGGAATGAACTCCGTATG
Found at i:29918412 original size:26 final size:26
Alignment explanation
Indices: 29918376--29918428 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29918366 CTAGTTTGAT
29918376 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29918402 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29918428 C
1 C
29918429 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29919261 original size:26 final size:26
Alignment explanation
Indices: 29919232--29919284 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29919222 CCGATCCGAT
*
29919232 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29919258 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29919284 C
1 C
29919285 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29919993 original size:26 final size:26
Alignment explanation
Indices: 29919955--29920007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29919945 GGCTCAAAAT
29919955 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29919981 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29920007 C
1 C
29920008 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29920485 original size:26 final size:26
Alignment explanation
Indices: 29920456--29920508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29920446 CCGATCCGAT
29920456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29920482 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29920508 C
1 C
29920509 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29920632 original size:343 final size:342
Alignment explanation
Indices: 29920139--29920824 Score: 908
Period size: 343 Copynumber: 2.0 Consensus size: 342
29920129 TCGGTCCAAT
* * * *
29920139 CTTAGATTGGGAATGAACTCCATATGAATAAGTCAACCCATAAAACGAGCGTGCGAGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCATATGAATAAGTCAACCCATAAAACAAGCATGCGAGCGCTGAGC
* * * *
29920204 CGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCC
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCGGTCC
* * *
29920269 CGCTGCCACAACCTTCGGTCCAGCTAGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGTCAA
131 CGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * **
29920334 CCCA-GAAAATGGGCGTGCGGGCACTCAACCGATCGGAGAGACAGAATGCACAAGCTGGGGATCG
196 CCCATG-AAACGGGCGTACGGGCACTCAACCGACCGGAGAGACAGAATGCACAAGCCAGGGATCG
* * * * * * *
29920398 GCTCGATCCGCCCTCCGTGCTGCCGATCCTGCTGTCAAAACCCTC-AGTCCGATCCGATCTTAGA
260 ACCCG-GCCCCCCTCCATGCTACCGATCCTGCTATCAAAACCCTCGA-TCCGATCCGATCTTAGA
29920462 CTGGGAATGAACTCCGTATG
323 CTGGGAATGAACTCCGTATG
* * ** ** * *
29920482 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGTAACAAGCATGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGAATAAGTCAACCCATAAAACAAGCATGCGAGCGCTGAGC
* *
29920547 CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTATCGGTCC
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCGGTCC
* * *
29920612 CGCTGCCACAACCCTCGGTCCGGGTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
29920677 CCCATGAAACGGGCGTACGGGCGCTCAGCCGGCCGGAGAGTCAGAATGCGCAAGCCAGGGATCGA
196 CCCATGAAACGGGCGTACGGGCACTCAACCGACCGGAGAGACAGAATGCACAAGCCAGGGATCGA
* ** * *
29920742 CCCGGCCCCCCTGCATGCTACCGATCCTGCTATCGTAACCCTCGATCCGGTTCGATCTTAGACTG
261 CCCGGCCCCCCTCCATGCTACCGATCCTGCTATCAAAACCCTCGATCCGATCCGATCTTAGACTG
*
29920807 GGAATGAACTTCGTATG
326 GGAATGAACTCCGTATG
29920824 C
1 C
29920825 CTAAGTCAAC
Statistics
Matches: 294, Mismatches: 47, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
342 66 0.22
343 227 0.77
344 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCCATATGAATAAGTCAACCCATAAAACAAGCATGCGAGCGCTGAGC
CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCGGTCC
CGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAACGGGCGTACGGGCACTCAACCGACCGGAGAGACAGAATGCACAAGCCAGGGATCGA
CCCGGCCCCCCTCCATGCTACCGATCCTGCTATCAAAACCCTCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:29920835 original size:157 final size:159
Alignment explanation
Indices: 29920481--29920875 Score: 438
Period size: 157 Copynumber: 2.5 Consensus size: 159
29920471 AACTCCGTAT
* * * * * *
29920481 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGTAACAAGCATGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAG
** * * * *
29920546 CCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTATCGGTC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCGATC
* * * *
29920611 CCGCTGCCACAACCCTCGGTCCGGGTGGG
131 CCGCTACCACAACCCTCGATCCGGGTCGA
* * * *
29920640 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCA
*
29920704 GCCGGCCGGAGAGTCAGAATGCGCAAGCC-AGGGATCGACCCGG-CCCCC-CTGCATGCTACCGA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGGTCCCCCTCTGCATGCTACCGA
* * ** *
29920766 TCCTGCTATCGTAACCCTCGATCCGGTTCGA
129 TCCCGCTACCACAACCCTCGATCCGGGTCGA
* * ** * **
29920797 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGTTTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAG
*
29920862 TCGGCCGGAGAGGC
66 CCGGCCGGAGAGGC
29920876 CGATCGAAGA
Statistics
Matches: 195, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
156 1 0.01
157 99 0.51
158 6 0.03
159 88 0.45
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCGATC
CCGCTACCACAACCCTCGATCCGGGTCGA
Found at i:29921479 original size:159 final size:158
Alignment explanation
Indices: 29921187--29921680 Score: 412
Period size: 159 Copynumber: 3.1 Consensus size: 158
29921177 GCTTAAACAT
* * * * * * * ** * *
29921187 GGAATCAACTCTGTGTGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGTTCAGTCGA-TCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAGCCGACT-GAA
* * * * * * * *
29921251 GAGGCAGAATGCGCAAGCCGGGGA-CTGACTCAGTCCCCCCCTGCTTGCTATC-GATCCTGCTGC
65 GAGGCAGAATGCACAAACCGAGGATCAG-CCCAGT-CCCCCCTACGTGCT-GCAGATCCTGCTGC
* *
29921314 CGCAACCCTCTGTCCGATCCGATCTTAGACTG
127 CACAACCCTCGGTCCGATCCGATCTTAGACTG
* * * * *
29921346 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC-GATCGTGCGGGCGCTGAGCCGA-TCGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTACGGGCACTCAGCCGACT-GA
* * * *
29921409 AGAGGC-GTAATGCACAAACCGGGGATCAGCCCGGTCCCTCTCTACGTGCTGCAGATCCCGCTGC
64 AGAGGCAG-AATGCACAAACCGAGGATCAGCCCAGTCCC-CCCTACGTGCTGCAGATCCTGCTGC
* * **
29921473 CACAACCCTCGGTCC-AACTGGGGCTTAGACAT-
127 CACAACCCTCGGTCCGATC-CGATCTTAGAC-TG
* * *
29921505 GAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTATGGGCACTCAGCCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAGCCGACTGAAG
* * * * * *
29921570 AGGCAGAATGCGCAAGCTGAGGATCAGCCCAGTCCCCCCTGCGTGTTGCTGATCCTGCTG-CAGC
66 AGGCAGAATGCACAAACCGAGGATCAGCCCAGTCCCCCCTACGTGCTGCAGATCCTGCTGCCA-C
* * *
29921634 AACCCTCGGTCTGGTTCGATCTTAGACTG
130 AACCCTCGGTCCGATCCGATCTTAGACTG
29921663 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
29921681 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 54, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.01
158 63 0.24
159 196 0.73
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAGCCGACTGAAG
AGGCAGAATGCACAAACCGAGGATCAGCCCAGTCCCCCCTACGTGCTGCAGATCCTGCTGCCACA
ACCCTCGGTCCGATCCGATCTTAGACTG
Found at i:29921690 original size:26 final size:26
Alignment explanation
Indices: 29921654--29921706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29921644 CTGGTTCGAT
*
29921654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29921680 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29921706 C
1 C
29921707 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29922426 original size:26 final size:26
Alignment explanation
Indices: 29922378--29922430 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29922368 TAAGTCTGAT
*
29922378 CTTAGACTAGGAATTAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
* * *
29922404 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
29922430 C
1 C
29922431 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:29924090 original size:21 final size:21
Alignment explanation
Indices: 29924039--29924090 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
29924029 ACCAAAGATG
*
29924039 GCAAGAAGAAGCCACCAGCAA
1 GCAAGAGGAAGCCACCAGCAA
*
29924060 GCAAGAGGAAGCCACCAGCAG
1 GCAAGAGGAAGCCACCAGCAA
*
29924081 GCAAGTGGAA
1 GCAAGAGGAA
29924091 AGCAAAAGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.42, C:0.25, G:0.31, T:0.02
Consensus pattern (21 bp):
GCAAGAGGAAGCCACCAGCAA
Found at i:29929527 original size:26 final size:26
Alignment explanation
Indices: 29929476--29929528 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29929466 CCAGTCTGAT
* *
29929476 CTTAGATTGGGAATGAACTTTATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
29929502 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
29929528 C
1 C
29929529 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:29930610 original size:26 final size:26
Alignment explanation
Indices: 29930559--29930611 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29930549 CCTTTCCAAT
* *
29930559 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
29930585 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACT-AGGAATGAACTCCATATG
29930611 C
1 C
29930612 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:29930967 original size:26 final size:26
Alignment explanation
Indices: 29930938--29930993 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
29930928 CCGGTCTGAT
29930938 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
29930964 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
29930990 CTTA
1 CTTA
29930994 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:29931665 original size:317 final size:313
Alignment explanation
Indices: 29930963--29931783 Score: 1054
Period size: 317 Copynumber: 2.6 Consensus size: 313
29930953 AACTCTGTAT
* * * * *
29930963 GCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACGAAACGAGTGTGCATACGGGCGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC--G-G-GCGTGCGGGCGC
* * * * **
29931028 TCAACCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGGTCCCCCCTATGTGCTGTCG
62 TCAGCC-GTCGGAGAGGCAGAAT--GCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCG
* * *
29931093 ATGCTGCTACCGTAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
124 ATCCTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
29931158 TCAACCCACGAAACTAGGGTACGGGCGCTAAGCAATCGGAGAGGCATAATGCGCAAGCGAGGGAT
189 TCAACCCACGAAACGAGCGTACGGGCGCTAAGCAATCAGAGAGGAATAATGCGCAAGCGAGGGAT
* * *
29931223 CTGCCCGGTCCCCCTCTATGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGTTGGG
254 CTGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
* * *
29931283 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * *
29931348 CCGATCGGAGAGGCAGAATGACAAGTCGGGGACCGACCCGATCCCTCCCTGCGTGCTGTCGATCC
66 CCG-TCGGAGAGGCAGAATG-CAAGCCAGGGATCGACCCGATCCC-CCCTGCGTGCTGTCGATCC
*
29931413 TGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
128 TGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
29931478 CCCACTAAACGAGCGTGCGGGCGCTCAATCGATCAGAGAGGAATAATGCGTAAGCCGA-GGATC-
193 CCCACGAAACGAGCGTACGGGCGCT-AAGCAATCAGAGAGGAATAATGCGCAAG-CGAGGGATCT
*
29931541 GACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
256 G-CCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
* * *
29931600 GCTTAGACATGGAATGAACTCCTTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * *
29931665 CCGGCTGGAGCGGTAGAATGCGTAAGCCAGGGATCG-GCCTAGTCCCCCCTGCGTGCTGTCGATC
66 CCGTC-GGAGAGGCAGAATGC--AAGCCAGGGATCGACCCGA-TCCCCCCTGCGTGCTGTCGATC
* * * *
29931729 CTGTTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
127 CTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
29931784 ACTTAGACCG
Statistics
Matches: 439, Mismatches: 52, Indels: 23
0.85 0.10 0.04
Matches are distributed among these distances:
314 1 0.00
315 20 0.05
316 131 0.30
317 227 0.52
318 18 0.04
320 42 0.10
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (313 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
CCGTCGGAGAGGCAGAATGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGC
TACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTACGGGCGCTAAGCAATCAGAGAGGAATAATGCGCAAGCGAGGGATCTGCCCG
GTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:29931685 original size:159 final size:159
Alignment explanation
Indices: 29930963--29931783 Score: 777
Period size: 158 Copynumber: 5.2 Consensus size: 159
29930953 AACTCTGTAT
* * * *
29930963 GCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACGAAACGAGTGTGCATACGGGCGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC--G-G-GCGTGCGGGCGC
* * * * **
29931028 TCAACCGGTCAGAGAGGCAGAATGCGCAAGCC-AGGGATCGACTCGGTCCCCCCTATGTGCTGTC
62 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGACCCGGTCCCCCCTGCGTGCTGTC
* * * *
29931092 GATGCTGCTACCGTAACCCTCAGTCTGGTTCGA
127 GATCCTGCTACCGCAACCCTCGGTCCGGTTCGA
* * * * *
29931125 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGG-GTACGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GGGCGTGCGGGCGCTC
* * **
29931188 AG-CAATCGGAGAGGCATAATGCGCAAG-CGAGGGATCTG-CCCGGTCCCCCTCTATGTGCTGTC
64 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGGATC-GACCCGGTCCCCC-CTGCGTGCTGTC
* * * * * * *
29931250 GGTCCCGCTGCCACAACCCTCGGTTCGGTTGGG
127 GATCCTGCTACCGCAACCCTCGGTCCGGTTCGA
* * * *
29931283 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * *
29931348 CCGATCGGAGAGGCAGAATG-ACAAGTCG-GGGACCGACCCGATCCCTCCCTGCGTGCTGTCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGACCCGGTCCC-CCCTGCGTGCTGTCGAT
* * *
29931411 CCTGCTACCGTAACCCTCGGTCTGGTCCGA
130 CCTGCTACCGCAACCCTCGGTCCGGTTCGA
* ** * *
29931441 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACTAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
** * * * * *
29931505 ATCGATCAGAGAGGAATAATGCGTAAGCCGA-GGATCGACCCGGTCCCCCTCTGCGTGCTGTCGG
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGA
* * * * * *
29931569 TCCCGCTGCCACAACCCTCGGTCCGGCTGGG
129 TCCTGCTACCGCAACCCTCGGTCCGGTTCGA
* * *
29931600 GCTTAGACATGGAATGAACTCCTTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * **
29931665 CCG-GCTGGAGCGGTAGAATGCGTAAGCC-AGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGAT
66 CCGATC-GGAGAGGCAGAATGCGCAAGCCGAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
* * *
29931728 CCTGTTACCGCAACCCTCGATCCGGTCCGA
130 CCTGCTACCGCAACCCTCGGTCCGGTTCGA
*
29931758 TCTTAGAC-TGGGAATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
29931784 ACTTAGACCG
Statistics
Matches: 533, Mismatches: 108, Indels: 40
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 42 0.08
158 280 0.53
159 166 0.31
160 2 0.00
161 1 0.00
162 41 0.08
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
CTGCTACCGCAACCCTCGGTCCGGTTCGA
Found at i:29932193 original size:26 final size:26
Alignment explanation
Indices: 29932155--29932204 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
29932145 GGCTCAAACT
*
29932155 CTTAGACTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAATAAACTCTGTAAG
29932181 CTTAGACAT-GGAATAAACTCTGTA
1 CTTAGAC-TGGGAATAAACTCTGTA
29932205 TGCCTAAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTAAG
Found at i:29932526 original size:26 final size:26
Alignment explanation
Indices: 29932485--29932537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29932475 TCGGTCTGAT
29932485 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
* *
29932511 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
29932537 C
1 C
29932538 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:29934066 original size:26 final size:26
Alignment explanation
Indices: 29933988--29934058 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
29933978 CTGGTCTGAT
*
29933988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
29934014 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
29934040 CTTAGACTGGGGATGAACT
1 CTTAGACTGGGGATGAACT
29934059 TTGTATGCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:29934566 original size:159 final size:156
Alignment explanation
Indices: 29934119--29934662 Score: 543
Period size: 159 Copynumber: 3.4 Consensus size: 156
29934109 CGGACAAGTT
* * *
29934119 GGCCGGAGAGGCATAATGCACAAGCCAAGGATCAACCCGGTCCCTCTCTTCGTGCTGTCGATCCT
1 GGCCGGAGAGGCATAATGCACAAGCC-AGGATCAGCCCGATCCC-CTCTGCGTGCTGTCGATCCT
* *
29934184 GCTACTACAACCTTCGGTCCGGCTGGGGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAAC
64 GCTACCACAACCTTCGGTCCGACTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAAC
*
29934249 CCACGAAACAAGCGTGCGGGTGCTCAACC
128 CCACGAAACAAGCGTGCGGGCGCTCAACC
* * * * * * **
29934278 GGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCAATCCCCCCTGTGTATTGTCGATCCTG
1 GGCCGGAGAGGCATAATGCACAAGCCA-GGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCCTG
* * * * * * ** * *
29934343 CTACCGCAACCCTCGATTC-AGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
65 CTACCACAACCTTCGGTCCGACT-GGGGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * **
29934407 CCATGAAACGAGTGTGCGGGCGCTGAGTC
128 CCACGAAACAAGCGTGCGGGCGCTCAACC
* * * * *
29934436 GGCTGGAGAGACATAATGCACAAGCCGAGGATCAGCTCGATCACCCTCTGCGTGCTGTCGGTCCC
1 GGCCGGAGAGGCATAATGCACAAGCC-AGGATCAGCCCGATC-CCCTCTGCGTGCTGTCGATCCT
*
29934501 GCTGCCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
64 GCTACCACAACCTTCGGTCCGACTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
29934566 CCACGAAACAAGCGTGCAGGTGCTCAGCC
128 CCACGAAACAAGCGTGCGGGCGCTCAACC
* * * * * * **
29934595 AGCCGGAGAGGCAGAATG-AGCGAGCCAGGGATCGGCCCGGTCCCTCCCTGCACGCTGTCGATCC
1 GGCCGGAGAGGCATAATGCA-CAAGCCA-GGATCAGCCCGATCCC-CTCTGCGTGCTGTCGATCC
29934659 TGCT
63 TGCT
29934663 GTGCACCATG
Statistics
Matches: 301, Mismatches: 74, Indels: 20
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 124 0.41
159 172 0.57
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GGCCGGAGAGGCATAATGCACAAGCCAGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCCTGC
TACCACAACCTTCGGTCCGACTGGGGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACAAGCGTGCGGGCGCTCAACC
Found at i:29934801 original size:26 final size:26
Alignment explanation
Indices: 29934762--29934811 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
29934752 GGCTCAAACT
29934762 CTTAGACTGAGAATGAACTCCGTAAG
1 CTTAGACTGAGAATGAACTCCGTAAG
29934788 CTTAGACATG-GAATGAACTCCGTA
1 CTTAGAC-TGAGAATGAACTCCGTA
29934812 TGCCTAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTAAG
Found at i:29935156 original size:26 final size:26
Alignment explanation
Indices: 29935118--29935170 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29935108 CCGATTCGAT
*
29935118 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29935144 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29935170 C
1 C
29935171 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29935639 original size:26 final size:26
Alignment explanation
Indices: 29935603--29935655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29935593 CCAGTCTGAT
29935603 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29935629 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29935655 C
1 C
29935656 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29935802 original size:184 final size:184
Alignment explanation
Indices: 29935457--29935805 Score: 389
Period size: 184 Copynumber: 1.9 Consensus size: 184
29935447 TAGACATAGA
* ** ** *
29935457 ATGAACTCCCTATGCCTAAGCCAACCGACAAAACGGGCGTACGGGTGCTCAGCCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCAACCGACCGGAGAGG
* * * * * * ** *
29935522 TAGAATGCGCAAGCTGGGTATCGGCCCGGTCCCCCCTGCGTGTTGTCGATCTTGCTACCGCAACC
66 CAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCCGCTACCACAACC
* * *
29935587 CTCTGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
131 CTCGGTCCAGACTGAGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * **
29935641 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCACTCAACCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCAACCGACCGGAGAGG
* * * * *
29935706 CATAATGCGTAAGCCGGGGGTCAGCCTGGTCCCCCTCTGCGTGCTGCC-AGTCCCGCTGCCACAA
66 CAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGCCGA-TCCCGCTACCACAA
* *
29935770 CCCTCGGTCC-GACTGGGGTTAGACAT-GGAATGAACT
129 CCCTCGGTCCAGACTGAGCTTAGAC-TGGGAATGAACT
29935806 TTGGATGCCT
Statistics
Matches: 133, Mismatches: 29, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
184 103 0.77
185 30 0.23
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCAACCGACCGGAGAGG
CAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCCGCTACCACAACC
CTCGGTCCAGACTGAGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
Found at i:29936138 original size:159 final size:159
Alignment explanation
Indices: 29935628--29936374 Score: 704
Period size: 159 Copynumber: 4.7 Consensus size: 159
29935618 AACTCCGTAT
* * * * *
29935628 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
29935692 ACCGACCGGAGAGGCATAATGCGTAAGCCGGGGGTC-AGCCTGGTCCCCCTCTGCGTGCTGCCAG
65 GCCGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGG
*
29935756 TCCCGCTGCCACAACCCTCGGTCCGACTGGG
129 TCCCGCTGCCACAACCCTCGGTCCGGCTGGG
** * * *
29935787 G-TTAGACATGGAATGAACTTTGGATGCCTAAG-CTAACCCACGAAACAAGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCA
* * *** * *
29935850 GCCAGCTAGAGAGGCAAAATGCGCAAGCCGGGGATCGGTTCGGTCCCCC-CTGTGTGCTGTCGAT
65 GCCGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
* ** ** * *
29935914 CCTGCTATCGTAACCCTCGGTCTGGTCT-GA
130 CCCGCTGCCACAACCCTCGGTCCGG-CTGGG
* * * * *
29935944 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
29936008 GCCGGCTGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCGCACTTTACGTGCTGTCGGT
65 GCCGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
* *
29936073 CCCGCTGCCACAACCTTCGGTCCGGTTGGG
130 CCCGCTGCCACAACCCTCGGTCCGGCTGGG
* * * **
29936103 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGGGCGCACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
29936168 CCAG-TCAAAAAGACAAAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCTCTGCGTGCTGTTGG
66 CCGGCT-GGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGG
* * **
29936231 TCCCGTTGCCAGAACCCTCGGTCTAGCTGGG
129 TCCCGCTGCCACAACCCTCGGTCCGGCTGGG
* * *
29936262 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACG-GCCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * * * *
29936326 GCTGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCC
65 GCCGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCC
29936375 CTATGTAATG
Statistics
Matches: 466, Mismatches: 107, Indels: 30
0.77 0.18 0.05
Matches are distributed among these distances:
157 32 0.07
158 182 0.39
159 250 0.54
160 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTC
CCGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:29936462 original size:26 final size:26
Alignment explanation
Indices: 29936433--29936485 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29936423 CCGGTCCGAT
* *
29936433 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATCAACGCCGTATG
29936459 CTTAGACATGGAATCAACGCCGTATG
1 CTTAGACATGGAATCAACGCCGTATG
29936485 C
1 C
29936486 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATCAACGCCGTATG
Found at i:29936803 original size:26 final size:26
Alignment explanation
Indices: 29936774--29936829 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
29936764 CTGGTTCGAT
*
29936774 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
29936800 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
29936826 CTTA
1 CTTA
29936830 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:29937589 original size:26 final size:26
Alignment explanation
Indices: 29937560--29937612 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29937550 CCGGTCTGAT
29937560 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29937586 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29937612 C
1 C
29937613 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29938076 original size:26 final size:26
Alignment explanation
Indices: 29938047--29938099 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29938037 CCGATCTGAT
* * *
29938047 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
29938073 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
29938099 C
1 C
29938100 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:29938828 original size:159 final size:156
Alignment explanation
Indices: 29938224--29938829 Score: 551
Period size: 159 Copynumber: 3.8 Consensus size: 156
29938214 CTGCTGCCAC
***
29938224 AACCCTCGGTCTGGCTGGGG-TTAGACATGGAATGAACTCTGGATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCT-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * ** * *
29938288 CAAGCGTGCGGGCACTCAACCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACCC-AGTCC
65 CGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TCC
* * *
29938352 CCC-CT-TGTGCTGCTGATCCTGCTGCCG
129 CCCTCTGTGTGCTGCTG-TCCCGTTGCAG
* **** * * * *
29938379 CAACCCTCGGTCTGGTCCAATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGA
1 -AACCCTCGGTCTGCT-GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * * *
29938443 AACGAGCGTGCGGGTGCTGAGTCAGCT-GGAGAGGCATAATGCGTAACCCGGGGATCGGCCCGAT
63 AACGAGCGTGCGGGCGCTCAG-CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT
* * * *
29938507 CGCCCTCTGTGTGCTGTCGGTCCCGCTGGCAC
127 CCCCCTCTGTGTGCTG-CTGTCCCG-TTGCAG
* * * *
29938539 AACCTTTGGTCCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGT-CTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * * * *
29938604 CGGGCGCGCGAGCGCTCAGCTAG-CGAAAAAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCC
65 CGAGCGTGCGGGCGCTCAGCTGGTCG-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
29938668 CCCTCTGTGTGCTGCTAGTCCCGTTGCTAG
129 CCCTCTGTGTGCTGCT-GTCCCGTTGC-AG
*
29938698 AACCCTCTGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCT-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * *
29938763 TGGGCGTACGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCC
65 CGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC
29938828 CC
130 CC
29938830 CTATGTAATG
Statistics
Matches: 356, Mismatches: 77, Indels: 31
0.77 0.17 0.07
Matches are distributed among these distances:
155 2 0.01
156 13 0.04
157 85 0.24
158 12 0.03
159 234 0.66
160 10 0.03
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (156 bp):
AACCCTCGGTCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC
CTCTGTGTGCTGCTGTCCCGTTGCAG
Found at i:29938917 original size:26 final size:26
Alignment explanation
Indices: 29938888--29938940 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
29938878 CCGGTCTGAT
29938888 CTTAGAC-TGGGAATGAAC-TCCGTATG
1 CTTAGACAT-GGAATGAACGT-CGTATG
29938914 CTTAGACATGGAATGAACGTCGTATG
1 CTTAGACATGGAATGAACGTCGTATG
29938940 C
1 C
29938941 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACGTCGTATG
Found at i:29939265 original size:26 final size:26
Alignment explanation
Indices: 29939229--29939281 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29939219 CTGGTCTGAT
*
29939229 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
29939255 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29939281 C
1 C
29939282 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29940122 original size:158 final size:157
Alignment explanation
Indices: 29939636--29940135 Score: 418
Period size: 158 Copynumber: 3.2 Consensus size: 157
29939626 CTCCGTATGC
* * * * * *
29939636 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTC-TGCGGGTGCACAG
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAG-CGTGAGGGCGCTCAG
* * * * * * * * ** *
29939699 TCGATCGGAGAGGTAGATTGCGTAAGCCGGGGACCGGCTCGATCCCCTCTATGTGCTGTCGATCT
64 -CCAGCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCC
* * * * *
29939764 TGCTGCTGCAACCCT-TGGTCTGGTCTGATC
128 TGCTGCAGCAACCCTCAGATC-GGTCTAATG
* * * *
29939794 TTAGACTGGGAATCAACTCCGTATGCCTAAGTCGACCCATGAAACTAGCGTGCGGGCGCTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAGCGTGAGGGCGCTCAGCC
* * * * * * * * * * *
29939859 AGCGAAGAGGCATAATGCACAAGTCAAGGTTCGGCCCGATCCTCATCTGCATGCTATCGGTCCCG
66 AGCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCC-CCTCTGCGTGCTGTCGATCCTG
* * * **
29939924 CTGCAACAACCCTCA-ATCCGACTAGGG
130 CTGCAGCAACCCTCAGATCGGTCTAATG
* * * *
29939951 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCGACCCATGAAAGGGGCGTGAGGGCGTTCAG
1 -TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAGCGTGAGGGCGCTCAG
* * *
29940015 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
64 CCAG-CGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCC
*
29940080 TGCTGTC-GCAACCCTCAGTTCGGTCTAATG
128 TGCTG-CAGCAACCCTCAGATCGGTCTAATG
*
29940110 TTAAACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
29940136 TTAGACTGCG
Statistics
Matches: 262, Mismatches: 70, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
157 36 0.14
158 184 0.70
159 42 0.16
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAGCGTGAGGGCGCTCAGCC
AGCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTGC
TGCAGCAACCCTCAGATCGGTCTAATG
Found at i:29940867 original size:26 final size:26
Alignment explanation
Indices: 29940831--29940883 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29940821 GGCTCAAACT
29940831 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
29940857 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29940883 C
1 C
29940884 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29941069 original size:26 final size:26
Alignment explanation
Indices: 29941040--29941096 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
29941030 CTGGTCTGAT
*
29941040 CTTAAAC-TGGGAATGAACTCTGTATG
1 CTTAAACAT-GGAATGAACTCCGTATG
*
29941066 CTTAGACATGGAATGAACTCCGTATG
1 CTTAAACATGGAATGAACTCCGTATG
29941092 CTTAA
1 CTTAA
29941097 GCCAACCCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTATG
Found at i:29942639 original size:26 final size:26
Alignment explanation
Indices: 29942603--29942655 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29942593 CCGGTTCAAT
29942603 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* * *
29942629 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
29942655 C
1 C
29942656 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:29942852 original size:26 final size:25
Alignment explanation
Indices: 29942812--29942863 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
29942802 CCAGTTCGAT
*
29942812 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACCGGAATGAACTCTGTATG
29942837 CTTAGACACGGAATGAACTCTGTATG
1 CTTAGAC-CGGAATGAACTCTGTATG
29942863 C
1 C
29942864 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACCGGAATGAACTCTGTATG
Found at i:29943209 original size:704 final size:701
Alignment explanation
Indices: 29941858--29943395 Score: 1812
Period size: 704 Copynumber: 2.2 Consensus size: 701
29941848 ACCCTCAGTC
* * * * * * *
29941858 TGTGCTATCGACCCTACTATTGCAACCCTCAATCCAGTTCGATCTTAGACTGGGAATGAACTCTG
1 TGTGCTATCGATCCTACTGTCGTAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCG
* * * * **
29941923 TGTGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGATCGTGCAGGTGCT
66 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT
* ** * *
29941988 CAACCGGTCAAAGAGGTAGGTCGGAGAGGCCAAATGTGCAAGCCGAGGATCAACCTAGGCCCCCT
131 CAACCGGTCAAAGAGGCAGGTCGGAGAGGCCAAATGCACAAGCCGAGGATCAACCAAGCCCCCCT
* *
29942053 ACATGCTACTGATCCTGCTGCTGGTCCTACTACCGCAACCCTCAGTCCGGTTCGATCTTAGATTG
196 ACATGCTACTGATCCTGCTGCTGGTCCTACTACCGCAACCCTCAGTCCAGTTCGATCTTAGACTG
* * *
29942118 GGAATGAACTCTGTATGCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAATGA
261 GGAATGAACTCTGTATGCTTAGACACGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAAAGA
* * * * * *
29942183 GCGTACGGGTGCTCAGTCGGTCGGAGAGGCAGAATCCGTAAGTCGGGGATCAGCCCGGTCCCCCC
326 GCGTACGGATGCTCAGTCGGTCGGAGAGCCAGAATCAGCAAGTCCGGGATCAGCCCGGTCACCCC
* * ** ** *
29942248 TGCGCTATCGATCCTGCTACCGTAATCTTTGATCCGATCTTAGACTGGGAATGAGCTCCGTATGC
391 TGCGCTATCGATCATACTACCACAATCTCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * ** * * *
29942313 CTAAGATAACCCATGAAATGAGCGTTCGGGTGCTGTGCCAGCCGGAGAGGCATAATACGCATGCC
456 CTAAGACAACCCAAAAAATGAGCGTTCGGGCGCTAAGCCAACCAGAGAGGCATAATACGCAAGCC
* ** * *
29942378 GGTGATTGGCCCGGTCCCCCTCTGCGTGATGTCGATCCCGCTGCCACAACCCTCAGTCCGGCTAG
521 GGTGATCGGCCCGGTCCCCCTCTGCGTGATACCGATCCCACTACCACAACCCTCAGTCCGGCTAG
* * * * * *
29942443 GGCTTAGACATGGAATGAACTCCCTATGCCTAACCAAACCCATGAAATTGGCGTGCGGGCGCTCA
586 GACTTAGACATGGAATGAACTACCTATGCCTAACCAAACCCACGAAACTAGCATGCGGGCGCTCA
* ** *
29942508 ACCGACCG-GAGAGGCAGAATGTGCAGGCCAAGGATCGGCCCGATACCCCC-TA
651 ACCGACCGAGAGAGGCAAAATGCACAAGCCAAGGATCGG--CGAT-CCCCCTTA
* * * *
29942560 TGTGCTACCGATCCTACTGTCGTAACCCTCGATCCGGTTCAATCTTAGAATGGGAATGAACTCCA
1 TGTGCTATCGATCCTACTGTCGTAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCG
*
29942625 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
66 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT
* *** * * * * *
29942690 TAACCGGTTGGAGATGCCGGTTGGAGAGG-CAGAATGCACAAGCTGAGGATCGACCCAAGCCCCC
131 CAACCGGTCAAAGAGGCAGGTCGGAGAGGCCA-AATGCACAAGCCGAGGATC-AACCAAGCCCCC
* * *
29942754 CTACATGCT-GTCGATCCTGCTGCTGGTCCTACTGCTGCAACCCTC-GATCCAGTTCGATCTTAG
194 CTACATGCTACT-GATCCTGCTGCTGGTCCTACTACCGCAACCCTCAG-TCCAGTTCGATCTTAG
* *
29942817 ACT-GGAATGAACTCTGTATGCTTAGACACGGAATGAAC-TCTGTATGCCTAAGGCAACCCAGCG
257 ACTGGGAATGAACTCTGTATGCTTAGACACGGAATAAACTTC-GTATGCCTAAGCCAACCCA-CG
* * *
29942880 AACAAG-GCGTGCGGATGCCTCAGTCGGTCAGGAG-GCCAGAATGAGCAAG-CCGGGATCGGCCC
320 AA-AAGAGCGTACGGATG-CTCAGTCGGTC-GGAGAGCCAGAATCAGCAAGTCCGGGATCAGCCC
* * *
29942942 -GT-ACCCCTGCGTGCTGTTCAGATCATACT-CCACAATCCTCAG-TCCGATCTTAGATTTGGAA
382 GGTCACCCCTGC--GCT-ATC-GATCATACTACCACAAT-CTCAGATCCGATCTTAGACTGGGAA
*
29943003 TGAACTCCGTATGCCTAAGACAACCCAAAAAATGAGTGTTCGGGCGCTAAGCCAACCAGAGAGGC
442 TGAACTCCGTATGCCTAAGACAACCCAAAAAATGAGCGTTCGGGCGCTAAGCCAACCAGAGAGGC
** * * * *
29943068 ATAATGTGCAAGTCGGTGATCGGCTCGGTCCCCCTCTGCGTGCTACC-AGTCTCACTACCACAAC
507 ATAATACGCAAGCCGGTGATCGGCCCGGTCCCCCTCTGCGTGATACCGA-TCCCACTACCACAAC
* *
29943132 CCTCGGTCCGGCTAGGATTTAGACATGGAATGAACTACCTATGCCTAAGCC-AACCCACGAAACT
571 CCTCAGTCCGGCTAGGACTTAGACATGGAATGAACTACCTATGCCTAA-CCAAACCCACGAAACT
* * *
29943196 AGCATGTGGGCGCTCAGCCGACCGAAGAGAGGCAAAATGCACAAGCCAGGGATCGGCGATCCCCC
635 AGCATGCGGGCGCTCAACCGACCG-AGAGAGGCAAAATGCACAAGCCAAGGATCGGCGATCCCCC
29943261 TTA
699 TTA
* * * * ** * *
29943264 GGTGCTGTCGATCCTGCTGCCGTAACCCTCGATTTGATTCGATATTAGACTGGGAATGAACTCCG
1 TGTGCTATCGATCCTACTGTCGTAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCG
* * *
29943329 TATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCT
66 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT
29943394 CA
131 CA
29943396 GCCGACCGGA
Statistics
Matches: 703, Mismatches: 114, Indels: 36
0.82 0.13 0.04
Matches are distributed among these distances:
701 11 0.02
702 204 0.29
703 98 0.14
704 349 0.50
705 16 0.02
706 25 0.04
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (701 bp):
TGTGCTATCGATCCTACTGTCGTAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT
CAACCGGTCAAAGAGGCAGGTCGGAGAGGCCAAATGCACAAGCCGAGGATCAACCAAGCCCCCCT
ACATGCTACTGATCCTGCTGCTGGTCCTACTACCGCAACCCTCAGTCCAGTTCGATCTTAGACTG
GGAATGAACTCTGTATGCTTAGACACGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAAAGA
GCGTACGGATGCTCAGTCGGTCGGAGAGCCAGAATCAGCAAGTCCGGGATCAGCCCGGTCACCCC
TGCGCTATCGATCATACTACCACAATCTCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGACAACCCAAAAAATGAGCGTTCGGGCGCTAAGCCAACCAGAGAGGCATAATACGCAAGCC
GGTGATCGGCCCGGTCCCCCTCTGCGTGATACCGATCCCACTACCACAACCCTCAGTCCGGCTAG
GACTTAGACATGGAATGAACTACCTATGCCTAACCAAACCCACGAAACTAGCATGCGGGCGCTCA
ACCGACCGAGAGAGGCAAAATGCACAAGCCAAGGATCGGCGATCCCCCTTA
Found at i:29943348 original size:26 final size:26
Alignment explanation
Indices: 29943308--29943359 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29943298 TGATTCGATA
29943308 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
29943334 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
29943360 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:29943523 original size:183 final size:182
Alignment explanation
Indices: 29943161--29943578 Score: 529
Period size: 183 Copynumber: 2.3 Consensus size: 182
29943151 TAGACATGGA
* * * * *
29943161 ATGAACTACCTATGCCTAAGCCAACCCACGAAACTAGCATGTGGGCGCTCAGCCGACCGAAGAGA
1 ATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCG-AGAGA
** *
29943226 GGCAAAATGCACAAGCCAGGGATCGGCGATCCCCCTTAGGTGCTGTCGATCCTGCTGCCGTAACC
65 GGCAAAATGCACAAGCCAGGGATCGGCGATCCCCCTTA-GTGCTACCGATCCTACTGCCGTAACC
** * * *
29943291 CTCGATTTGATTCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
129 CTCGATCCGATTCAATATTAGAATGGGAATGAACTCCATATGCTTAGACTGGGG
* *
29943345 ATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCG-GAGAG
1 ATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGAGAGAG
* * *
29943409 GC-AGATGCATAAGCC-GAGGATCGGCCTGATACCCCCTGT-GTGCTACCGATCCTACTGTCGTA
66 GCAAAATGCACAAGCCAG-GGATCGG-C-GAT-CCCCCT-TAGTGCTACCGATCCTACTGCCGTA
* * *
29943471 TCCCTCGATCCGGTTCAATCTTAGAATGGGAATGAACTCCATATGCTTAGACTGGGG
126 ACCCTCGATCCGATTCAATATTAGAATGGGAATGAACTCCATATGCTTAGACTGGGG
* * *
29943528 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
1 ATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCA
29943579 ATCGGTTGGA
Statistics
Matches: 204, Mismatches: 25, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
180 1 0.00
181 18 0.09
182 8 0.04
183 118 0.58
184 58 0.28
185 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (182 bp):
ATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGAGAGAG
GCAAAATGCACAAGCCAGGGATCGGCGATCCCCCTTAGTGCTACCGATCCTACTGCCGTAACCCT
CGATCCGATTCAATATTAGAATGGGAATGAACTCCATATGCTTAGACTGGGG
Found at i:29943526 original size:26 final size:26
Alignment explanation
Indices: 29943490--29943542 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29943480 CCGGTTCAAT
29943490 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* * *
29943516 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
29943542 C
1 C
29943543 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:29944167 original size:888 final size:887
Alignment explanation
Indices: 29942444--29944298 Score: 2856
Period size: 888 Copynumber: 2.1 Consensus size: 887
29942434 TCCGGCTAGG
* * * * ***
29942444 GCTTAGACAT-GGAATGAACTCCCTATGCCTAA-CCAAACCCATGAAATTGGCGTGCGGGCGCTC
1 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTC-AACCCATGAAACAAGCGTGCGGGCGCTC
** *
29942507 AACCGACCGGAGAGGCAGAATGTGCAGGCCAAGGATCGGCCCGATACCCCCTATGTGCTACCGAT
64 AACCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATACCCCCTATGTGCTACCGAT
29942572 CCTACTGTCGTAACCCTCGATCCGGTTCAATCTTAGAATGGGAATGAACTCCATATGCTTAGACT
129 CCTACTGTCGTAACCCTCGATCCGGTTCAATCTTAGAATGGGAATGAACTCCATATGCTTAGACT
*
29942637 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAACCGGTTGGA
194 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTTGGA
* * *
29942702 GATGCCGGTTGGAGAGGCAGAATGCACAAGCTGAGGATCGACCCAAGCCCCCCTACATGCTGTCG
259 GATGCCGGTCGAAGAGGCAGAATGCACAAGCTGAGGATCGACCCAAGCCCCCCTACATGCTGCCG
* *
29942767 ATCCTGCTGCTGGTCCTACTGCTGCAACCCTCGATCCAGTTCGATCTTAGACTGGAATGAACTCT
324 ATCCTACTGCTAGTCCTACTGCTGCAACCCTCGATCCAGTTCGATCTTAGACTGGAATGAACTCT
*
29942832 GTATGCTTAGACACGGAATGAACTCTGTATGCCTAAGGCAACCCAGCGAACAAGGCGTGCGGATG
389 GTATGCTTAGACACGGAATGAACTCTGTATGCCTAAGCCAACCCAGCGAACAAGGCGTGCGGATG
* *
29942897 CCTCAGTCGGTCAGGAGGCCAGAATGAGCAAGCCGGGATCGGCCCGTACCCCTGCGTGCTGTTCA
454 CCTCAGTCGGTCAGGAGGCCAGAATGAGCAAGCCGGGATCAGCCCGTACCCCTGCATGCTGTTCA
* *
29942962 GATCATACTCCACAATCCTCAGTCCGATCTTAGATTTGGAATGAACTCCGTATGCCTAAGACAAC
519 GATCATACTCCACAATCCTCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCGAAGACAAC
* *
29943027 CCAAAAAATGAGTGTTCGGGCGCTAAGCCAACCAGAGAGGCATAATGTGCAAGTCGGTGATCGGC
584 CCAAAAAATGAGTGTTCGGGCGCTAAGCCAACCAGAGAGGCATAATGTGCAAGTCGATGATCGAC
*
29943092 TCGGTCCCCCTCTGCGTGCTACCAGTCTCACTACCACAACCCTCGGTCCGGCTAGGATTTAGACA
649 TCGGTCCCCCTCTGCGTGCTACCAGTCTCACTACCACAACCCTCGGTCCGACTAGGATTTAGACA
29943157 TGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACTAGCATGTGGGCGCTCAGCCGACCGAA
714 TGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACTAGCATGTGGGCGCTCAGCCGACCG-A
* *
29943222 GAGAGGCAAAATGCACAAGCCAGGGATCGGCGATCCCCCTTAGGTGCTGTCGATCCTGCTGCCGT
778 GAGAGGCAAAATGCACAAGCCAGGGATCGGCCATCCCCCTTAGGTGCTGTCGATCCTGCTGCCGC
* *
29943287 AACCCTCGATTTGATTCGATATTAGACTGGGAATGAACTCCGTAT
843 AACCCTCAATCTGATTCGATATTAGACTGGGAATGAACTCCGTAT
*
29943332 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAA
* * * *
29943397 CCGACCGGAGAGGCAG-ATGCATAAGCCGAGGATCGGCCTGATACCCCCTGTGTGCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATACCCCCTATGTGCTACCGATCC
*
29943461 TACTGTCGTATCCCTCGATCCGGTTCAATCTTAGAATGGGAATGAACTCCATATGCTTAGACTGG
131 TACTGTCGTAACCCTCGATCCGGTTCAATCTTAGAATGGGAATGAACTCCATATGCTTAGACTGG
*
29943526 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAATCGGTTGGAGA
196 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTTGGAGA
** * ***
29943591 TGCCGGTCGAAGAGGCAGAATGTGCAAGCTGAGGATCGGCCTGGGCCCCCCTACATGCTGCCGAT
261 TGCCGGTCGAAGAGGCAGAATGCACAAGCTGAGGATCGACCCAAGCCCCCCTACATGCTGCCGAT
* * * *
29943656 CCTACTGCTAGTCCTACTGCTGTAACCCTCGGTCTAGTTTGATCTTAGACTGGAATGAACTCTGT
326 CCTACTGCTAGTCCTACTGCTGCAACCCTCGATCCAGTTCGATCTTAGACTGGAATGAACTCTGT
* * * *
29943721 TTGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA-CGGAACGA-GCGTGCGGGTG-
391 ATGCTTAGACACGGAATGAACTCTGTATGCCTAAGCCAACCCAGC-GAACAAGGCGTGCGGATGC
** *
29943783 CTCAGTCGGTC-GGAGAGGTAGAATGAGCAAGCCGGGGATCAGCCCGATCCCCCCCTGCATGCTG
455 CTCAGTCGGTCAGGAG-GCCAGAATGAGCAAGCC-GGGATCAGCCCG-T--ACCCCTGCATGCTG
* *
29943847 -TC-GATCGTACTGCCACAATCCTCAGTCCGATCTTAGATTGGGAATGAGCTCCGTATGCCGAAG
515 TTCAGATCATACT-CCACAATCCTCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCGAAG
* *
29943910 ACAACCCATAAAATGAGTGTTCGGGCGCTAAGCCAATC-GAAGAGGCATAATGTGCAAGTCGATG
579 ACAACCCAAAAAATGAGTGTTCGGGCGCTAAGCCAACCAG-AGAGGCATAATGTGCAAGTCGATG
* * * *
29943974 ATCGACTCGGTCCCTCTCTGCGTGCTACCGGTCTCGCTACCACAACCCTCGGTCCGACT-GGTGT
643 ATCGACTCGGTCCCCCTCTGCGTGCTACCAGTCTCACTACCACAACCCTCGGTCCGACTAGG-AT
*
29944038 TTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACTAGCATGTGGGCGCTTAGCC
707 TTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACTAGCATGTGGGCGCTCAGCC
* ** *
29944103 GACCG-GAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCAGT-CCCCTCTAGGTGCTGTTGATCC
772 GACCGAGAGAGGCAAAATGCACAAGCCAGGGATCGG-CCA-TCCCCCT-TAGGTGCTGTCGATCC
*
29944166 TGCTGCCGCAACCCTCAATCTGATTCGATATTAGACTGGGAATGAACTTCGTAT
834 TGCTGCCGCAACCCTCAATCTGATTCGATATTAGACTGGGAATGAACTCCGTAT
* *
29944220 GCTTAGACTGGGGATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCA
1 GCTTAGACTGGGGATGAACTTC-GTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCA
29944284 ACCGACCGGAGAGGC
65 ACCGACCGGAGAGGC
29944299 TGGTCGAAAA
Statistics
Matches: 883, Mismatches: 69, Indels: 30
0.90 0.07 0.03
Matches are distributed among these distances:
884 4 0.00
885 26 0.03
886 49 0.06
887 350 0.40
888 441 0.50
889 13 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (887 bp):
GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGATACCCCCTATGTGCTACCGATCC
TACTGTCGTAACCCTCGATCCGGTTCAATCTTAGAATGGGAATGAACTCCATATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTTGGAGA
TGCCGGTCGAAGAGGCAGAATGCACAAGCTGAGGATCGACCCAAGCCCCCCTACATGCTGCCGAT
CCTACTGCTAGTCCTACTGCTGCAACCCTCGATCCAGTTCGATCTTAGACTGGAATGAACTCTGT
ATGCTTAGACACGGAATGAACTCTGTATGCCTAAGCCAACCCAGCGAACAAGGCGTGCGGATGCC
TCAGTCGGTCAGGAGGCCAGAATGAGCAAGCCGGGATCAGCCCGTACCCCTGCATGCTGTTCAGA
TCATACTCCACAATCCTCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCGAAGACAACCC
AAAAAATGAGTGTTCGGGCGCTAAGCCAACCAGAGAGGCATAATGTGCAAGTCGATGATCGACTC
GGTCCCCCTCTGCGTGCTACCAGTCTCACTACCACAACCCTCGGTCCGACTAGGATTTAGACATG
GAATGAACTACCTATGCCTAAGCCAACCCACGAAACTAGCATGTGGGCGCTCAGCCGACCGAGAG
AGGCAAAATGCACAAGCCAGGGATCGGCCATCCCCCTTAGGTGCTGTCGATCCTGCTGCCGCAAC
CCTCAATCTGATTCGATATTAGACTGGGAATGAACTCCGTAT
Found at i:29944225 original size:26 final size:26
Alignment explanation
Indices: 29944196--29944247 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29944186 TGATTCGATA
29944196 TTAGACTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATGAACTCT-GTATGC
*
29944222 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
29944248 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:29944599 original size:26 final size:26
Alignment explanation
Indices: 29944563--29944615 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29944553 CTGGTCTGAT
29944563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29944589 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29944615 C
1 C
29944616 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29945285 original size:159 final size:159
Alignment explanation
Indices: 29944953--29945318 Score: 396
Period size: 159 Copynumber: 2.3 Consensus size: 159
29944943 AACTCCGTAT
* * *
29944953 GCTTAGAA-ATGGAATGAACTCCATATACCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA
1 GCTTA-AACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACACA
* * * * *
29945017 ACTGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGAT
65 ACTGGTCGGAGAGACAAAACGCGCAAGCCGAGGATCGGCCTGATCCCCCCCTGCGTGCTATCGAT
** * *
29945082 CTTGCTGTCGCAACCCTCAGTCCGGTCCGA
130 CTCACTGCCACAACCCTCAGTCCGGTCCGA
* * * * * * *
29945112 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCAGA
1 GCTTAAACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACACA
* * * * * * *
29945176 GCTGGTCGGAGAGACATAACGCGTAAGCCGGGGATTGATCC-GATCCCCCTCTGCGTGCTATCGA
65 ACTGGTCGGAGAGACAAAACGCGCAAGCCGAGGATCG-GCCTGATCCCCCCCTGCGTGCTATCGA
** *
29945240 TCTCACTGCCACAACCCTCAGTCCGGTTGGG
129 TCTCACTGCCACAACCCTCAGTCCGGTCCGA
* * *
29945271 GCTTAAACATGGAATGACCTCCCTATGCCTAAGCCAGCCCATGAAACG
1 GCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACG
29945319 GGCATACGGG
Statistics
Matches: 167, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 2 0.01
159 162 0.97
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACACAA
CTGGTCGGAGAGACAAAACGCGCAAGCCGAGGATCGGCCTGATCCCCCCCTGCGTGCTATCGATC
TCACTGCCACAACCCTCAGTCCGGTCCGA
Found at i:29945363 original size:159 final size:159
Alignment explanation
Indices: 29944963--29945374 Score: 378
Period size: 159 Copynumber: 2.6 Consensus size: 159
29944953 GCTTAGAAAT
* * * * * * * ** * *
29944963 GGAATGAACTCCATATACCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAACTGGTCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCAGAGCCGGTCGGAG
* * * ** * *
29945028 AGGCAAAATGCGCAAGTCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGATCTTGCTGTCGC
66 AGGCAAAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCCTGCGTGCTATCGATCTCACTGCCAC
* *
29945093 AACCCTCAGTCCGGTCCGATCTTAGACTA
131 AACCCTCAGTCCGGTCCGAGCTTAAACTA
* * * * *
29945122 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCAGAGCTGGTCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCAGAGCCGGTCGGAG
* * * * * * * *
29945187 AGACATAACGCGTAAGCCGGGGATTGATCC-GATCCCCCTCTGCGTGCTATCGATCTCACTGCCA
66 AGGCAAAATGCGCAAGCCGAGGATCG-GCCTGATCCCCCCCTGCGTGCTATCGATCTCACTGCCA
** *
29945251 CAACCCTCAGTCCGGTTGGGGCTTAAAC-A
130 CAACCCTCAGTCCGGTCCGAGCTTAAACTA
* * * * * * **
29945280 TGGAATGACCTCCCTATGCCTAAGCCAGCCCATGAAACGGGCATACGGGTGCTTAGCCGGTCGGA
1 -GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCAGAGCCGGTCGGA
* *
29945345 GAGGCAGAATGCGCAAGCCGAAGATCGGCC
65 GAGGCAAAATGCGCAAGCCGAGGATCGGCC
29945375 CGGTCCCTCT
Statistics
Matches: 201, Mismatches: 50, Indels: 5
0.79 0.20 0.02
Matches are distributed among these distances:
158 3 0.01
159 196 0.98
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCAGAGCCGGTCGGAG
AGGCAAAATGCGCAAGCCGAGGATCGGCCTGATCCCCCCCTGCGTGCTATCGATCTCACTGCCAC
AACCCTCAGTCCGGTCCGAGCTTAAACTA
Found at i:29946180 original size:26 final size:26
Alignment explanation
Indices: 29946142--29946220 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
29946132 GGCTCAAAAT
29946142 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29946168 CTTAGACATGGAATGAACTCCGCATG
1 CTTAGACATGGAATGAACTCCGTATG
29946194 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29946220 C
1 C
29946221 CTAAGGCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29946695 original size:158 final size:158
Alignment explanation
Indices: 29946194--29946695 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 158
29946184 ACTCCGCATG
* * * *
29946194 CTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCAGGCGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
29946259 CGGTCGGAGAGGTAGAATGCGCAAGCC-AGAGATCGACCCGGTCCCCCCTGCGTGCTGTTGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGAG-GATCGACCTGGTCCCCCTTGCGTGCTGTCGATCC
* ** * * **
29946323 TACTGTCGCAACCCTCAAT-TTGATCCAAT
130 TACTGCCGCAACCCTCGGTCTGGCT-GGAT
* * * * * * *
29946352 CTTATAC-TGGGAATGAACTCCGTATGCATAAGTCAACTCC-CGAAACGAGCGTACGAGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC-CCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * ** *
29946415 GCCGGTCGAAGAGGCATAATGCGTGAGCCGGGGATCGACTTGGTCCCCCTCTATGTGCTGTCGGT
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCCT-TGCGTGCTGTCGAT
* * * **
29946480 CTCGA-TGCCACAACCCTCGGTCTGCCTGGGG
128 C-CTACTGCCGCAACCCTCGGTCTGGCTGGAT
* * *
29946511 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
29946576 CAATCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTGGTTCCCCTTGCGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTTGCGTGCTGTCGATCCT
* *
29946641 ACTACCGCAACCCTCGGTCCGGCTGGAT
131 ACTGCCGCAACCCTCGGTCTGGCTGGAT
* *
29946669 CTTAGAC-TGGGAATAAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
29946696 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 68, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 144 0.54
159 113 0.42
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTTGCGTGCTGTCGATCCT
ACTGCCGCAACCCTCGGTCTGGCTGGAT
Found at i:29946705 original size:26 final size:26
Alignment explanation
Indices: 29946669--29946721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29946659 CCGGCTGGAT
*
29946669 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
29946695 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
29946721 C
1 C
29946722 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:29947717 original size:158 final size:153
Alignment explanation
Indices: 29947427--29947910 Score: 443
Period size: 158 Copynumber: 3.1 Consensus size: 153
29947417 TTAGACATGT
* * *
29947427 AATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCAGGCGCTCAGCCGGCCAGAGTG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TAGCGTGCAGGCGCTCAGCC-GCGA-AGAG
* * * * * **
29947492 GCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCCTATGTGTTGTCGATCCTGCTGCCGTAA
63 GCAGAATGCGCAAGTCGGGGATCGACCCGGT-CCCCCCTACGTGCT-ACGATCCTGCTGCCACAA
*
29947557 CCCTCAGTTTGGTCTGATCTTAGATTAGG
126 CCCTC-GTCTGGTCTGATCTTAGATTAGG
* * * * *
29947586 AATGAACTCCGTATGCCTAAGTCGACCCATGAAACTAGCGTGCGGGCGCTGAGCCAGCGAAGAGG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TAGCGTGCAGGCGCTCAGCC-GCGAAGAGG
* * *
29947651 CATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACATGCTACGGGTCCTGCTGCCACAAC
64 CAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCC-CTACGTGCTAC-GATCCTGCTGCCACAAC
** *
29947716 CCTCGATCTGG-CTGGGGCTTAGA-CATGG
127 CCTCG-TCTGGTCT-GATCTTAGATTA-GG
* * * *
29947744 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCCGGTGCTCAGCCGACTTG-AGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-AGCGTGCAGGCGCTCAGCCG-C--GAAGA
** * * * * *
29947808 GGCAGAATGCTTAAGTCGGCGATTGGCCCGGTTCCCCCTGCGTGCTATCGATCCTGCTGCCACAA
62 GGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTA-CGATCCTGCTGCCACAA
* * *
29947873 CCCTTGGTCTGGTCCGATCTTAGATTGGG
126 CCC-TCGTCTGGTCTGATCTTAGATTAGG
*
29947902 AATCAACTC
1 AATGAACTC
29947911 TGTGTGCTTA
Statistics
Matches: 263, Mismatches: 49, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
157 12 0.05
158 162 0.62
159 88 0.33
160 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (153 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGCGTGCAGGCGCTCAGCCGCGAAGAGGCA
GAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTACGATCCTGCTGCCACAACCCTC
GTCTGGTCTGATCTTAGATTAGG
Found at i:29948689 original size:25 final size:26
Alignment explanation
Indices: 29948614--29948691 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
29948604 GGCTCAAAAT
* *
29948614 CTTAGAC-TGGGAATGAAATCCATACG
1 CTTAGACAT-GGAATGAAATCCGTATG
* *
29948640 CTTAGACATGGAATGAATTCTGTATG
1 CTTAGACATGGAATGAAATCCGTATG
*
29948666 CTTAGACAT-GAATGAACTCCGTATG
1 CTTAGACATGGAATGAAATCCGTATG
29948691 C
1 C
29948692 CTAAGCCAAC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
25 15 0.33
26 29 0.64
27 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:29949153 original size:158 final size:155
Alignment explanation
Indices: 29948675--29949166 Score: 452
Period size: 158 Copynumber: 3.1 Consensus size: 155
29948665 GCTTAGACAT
* * * * * *
29948675 GAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGTGGGTGCTCAGCCGACCGGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCACTAAACGAGCATGCGGGTGCTCAGCCGGCTGGAGA
* * * * *
29948740 GGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCCTACGTGCTGTCAATCCTGCTGCCACA
66 GGCAGAATGTGCAAGTC-GGGATCGGCCCGAT-CCCCCCTACGTGCTGTCGATCCTACTGCCACA
*
29948805 ACCCTTGGTCCGGGCCGATCTTAGACTGG
129 ACCCTTGGTCC--GCCTATCTTAGACTGG
* * * * * *
29948834 GAATGAACTCTGTATCCATAAGTCAACCCA-TGAAACGAGCATGCGGGTGTTGAGCCGG-TCGAA
1 GAATGAACTCCGTATGCATAAGCCAACCCACT-AAACGAGCATGCGGGTGCTCAGCCGGCT-GGA
* * * * *
29948897 GAGGCATAATGTGCAAGTCGGGATCGGCCCGGTCCCCCTCTACGTACTGTCGGTCCCACTGCCAC
64 GAGGCAGAATGTGCAAGTCGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCCTACTGCCAC
* * * ** *
29948962 AACCCTCGGTCTGGCTGGGGCTTACACAT-G
128 AACCCTTGGTCCGCCT--ATCTTAGAC-TGG
* * * * * * *
29948992 GAATGAACTCCCTATGCGTAAGCCAACCCACTAAATGGGCGTGCGGGTGCTCAACTGGCTGGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCACTAAACGAGCATGCGGGTGCTCAGCCGGCTGGAGA
* * * * *
29949057 GGCAGAATGTGCAAGTCGAGGATCGACCCGATCCCCCCTGCATGCTG-CTGATCTTACTACCACA
66 GGCAGAATGTGCAAGTCG-GGATCGGCCCGATCCCCCCTACGTGCTGTC-GATCCTACTGCCACA
29949121 ACCCTTGGTCCGATCCTATCTTAGACTGG
129 ACCCTTGGTCCG--CCTATCTTAGACTGG
*
29949150 GAATGAACTTCGTATGC
1 GAATGAACTCCGTATGC
29949167 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 60, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 165 0.63
159 84 0.32
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
GAATGAACTCCGTATGCATAAGCCAACCCACTAAACGAGCATGCGGGTGCTCAGCCGGCTGGAGA
GGCAGAATGTGCAAGTCGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTGCCACAAC
CCTTGGTCCGCCTATCTTAGACTGG
Found at i:29949192 original size:26 final size:26
Alignment explanation
Indices: 29949140--29949192 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29949130 CCGATCCTAT
*
29949140 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
*
29949166 CTTAGACTGGGGATGAAC-TCTGCATG
1 CTTAGACTGGGAATGAACTTC-GCATG
29949192 C
1 C
29949193 CTAAGCAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:29949900 original size:26 final size:27
Alignment explanation
Indices: 29949862--29949915 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
29949852 GGCTCAAAAT
29949862 CTTAGACTGGGAATG-AACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
*
29949888 CTTAGACAT-GGAATGAAACTCTGTATG
1 CTTAGAC-TGGGAATGAAACTCCGTATG
29949915 C
1 C
29949916 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCCGTATG
Found at i:29950395 original size:158 final size:159
Alignment explanation
Indices: 29950046--29950395 Score: 395
Period size: 159 Copynumber: 2.2 Consensus size: 159
29950036 TTAGTCCGGG
* ** * *
29950046 TCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCA
* * * * *
29950111 CTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGC
66 CTCAGCCGACCGAAGAGGCAAAATGCACAAGCAGGGGATCAGCACGATCCCCCTCTGCGTGCTGC
* *
29950176 CGATGCCACTGCCATAACCCTCAATCCGG
131 CGATGCCACTGCCACAACCCTCAATCCGA
** * * * *
29950205 T-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGG
1 TCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGG
* * * *
29950268 CACTCAGCCGGCCGGAA-AGGTAAAATGCACAAGCAGGGGATCAGCATGGTCCCCC-CTGCGTGC
64 CACTCAGCCGACC-GAAGAGGCAAAATGCACAAGCAGGGGATCAGCACGATCCCCCTCTGCGTGC
* ** *
29950331 TGTCGAT-CCTACTGCCACAACCCTCGGTTCGA
128 TGCCGATGCC-ACTGCCACAACCCTCAATCCGA
29950363 TCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGC
29950396 TTAGACTGTG
Statistics
Matches: 156, Mismatches: 29, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
157 3 0.02
158 58 0.37
159 91 0.58
160 4 0.03
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCA
CTCAGCCGACCGAAGAGGCAAAATGCACAAGCAGGGGATCAGCACGATCCCCCTCTGCGTGCTGC
CGATGCCACTGCCACAACCCTCAATCCGA
Found at i:29950410 original size:26 final size:27
Alignment explanation
Indices: 29950369--29950426 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
29950359 TCGATCTGAT
29950369 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
29950395 CTTAGACTGTGG-ATGAACTCCGTATGC
1 CTTAGACTG-GGAATGAACTCCGTATGC
29950422 CTTAG
1 CTTAG
29950427 TCAACCCATG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:29950787 original size:26 final size:26
Alignment explanation
Indices: 29950749--29950801 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29950739 CCAATCCGAT
29950749 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29950775 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
29950801 C
1 C
29950802 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29951455 original size:26 final size:26
Alignment explanation
Indices: 29951426--29951476 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29951416 CAGTCAGATC
29951426 TTAGAC-TGGGAATGAACTCCATATGT
1 TTAGACAT-GGAATGAACTCCATATGT
*
29951452 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCATATG
29951477 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGT
Found at i:29951728 original size:185 final size:183
Alignment explanation
Indices: 29951269--29951732 Score: 515
Period size: 185 Copynumber: 2.5 Consensus size: 183
29951259 ACTGGGGCTT
* *
29951269 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGCTGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCTCAGC-GA
* * * ** * *
29951334 TCGAAGAGGTAGAATGTGTAAG-TCAAGGATCGACCCGGTCTCCCTCCGCATGCTGCAGATCCTG
64 CCAAAGAGGTAGAATGTGCAAGCT-GGGGACCGACCCGGTCTCCCTCCGCATGCTGCAGATCCTA
* * *
29951398 CTGCCGCAACCCTCGATCCAGTCAGATCTTAGACTGGGAATGAACTCCATATGTTT
128 CTGCCGCAACCCTCGATCCAGTCAGATCTTAGACTAGGAATGAACTCCATATGCTG
* * * *
29951454 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTTGGCGCTCAGCCCA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-CGGCGCTCAG-CGA
* * * *
29951519 CCAGAGAGGTAGAATGTGCAAGCTGGGGACCGGCCTGGTC-CCC-CCATGCGTGCTGTC-GATCC
64 CCAAAGAGGTAGAATGTGCAAGCTGGGGACCGACCCGGTCTCCCTCC--GCATGCTG-CAGATCC
* * * * * *
29951581 TACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTGTGCTG
126 TACTGCCGCAACCCTCGATCCAGTCAGATCTTAGACTAGGAATGAACTCCATATGCTG
* *
29951639 AGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGTCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG-CGCTCAG-CG
* * *
29951703 ACCAAAGAGGCAGGATGCGCAAGCTGGGGA
63 ACCAAAGAGGTAGAATGTGCAAGCTGGGGA
29951733 TCGAACGAGT
Statistics
Matches: 234, Mismatches: 37, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
183 2 0.01
184 6 0.03
185 223 0.95
186 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (183 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTCAGCGACC
AAAGAGGTAGAATGTGCAAGCTGGGGACCGACCCGGTCTCCCTCCGCATGCTGCAGATCCTACTG
CCGCAACCCTCGATCCAGTCAGATCTTAGACTAGGAATGAACTCCATATGCTG
Found at i:29952894 original size:25 final size:25
Alignment explanation
Indices: 29952856--29952906 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
29952846 CCAATCTGAT
29952856 CTTAGACTGGAATGAACTC-GTATG
1 CTTAGACTGGAATGAACTCTGTATG
29952880 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCTGTATG
29952906 C
1 C
29952907 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 7 0.28
25 12 0.48
26 6 0.24
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:29953397 original size:26 final size:26
Alignment explanation
Indices: 29953353--29953405 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
29953343 CCAGTCTGAT
*
29953353 CTTAAACTAGGAATGAAC-TCTGTATG
1 CTTAAACTAGGAATCAACTTC-GTATG
* *
29953379 CTTAGACTAGGGATCAACTTCGTATG
1 CTTAAACTAGGAATCAACTTCGTATG
29953405 C
1 C
29953406 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATCAACTTCGTATG
Found at i:29954716 original size:26 final size:26
Alignment explanation
Indices: 29954680--29954732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29954670 CCTGTTTGAT
29954680 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29954706 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29954732 C
1 C
29954733 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29956467 original size:158 final size:159
Alignment explanation
Indices: 29956277--29956624 Score: 405
Period size: 159 Copynumber: 2.2 Consensus size: 159
29956267 TCTTAGATTG
* ** * ** * * * * *
29956277 GGAATGAACTCCGTATGCCTAAAACAATCCATGAAACGAACGTGC-AGCGTTGAGCCGGTCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGCACGAGCGCTCAGCCAGTCGAAA
* * *
29956341 AGGCATAATGCGCAAGCCGAGAATCGACCCGATCGCACTCTGCGTGCTG-TCGGTCCCGCTGCCA
66 AGACAGAATGCGCAAGCCGAGAATCGACCCGATCCCACTCTGCGTGCTGCT-GGTCCCGCTGCCA
* *
29956405 CAAC-CTTCGGTCCGGTTGGGGCTTAGACAT
130 CAACTC-TCGGTCCAGCTGGGGCTTAGACAT
** *
29956435 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGCACGGGCGCTCAGCCAGTCGAAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGCACGAGCGCTCAGCCAGTCGAAA
* * * * * * *
29956500 AGATAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGGTCCCGTTGCCAG
66 AGACAGAATGCGCAAGCCGAGAATCGACCCGATCCCACTCTGCGTGCTGCTGGTCCCGCTGCCAC
*
29956565 AACTCTCGGTCTAGCTGGGGCTTAGACAT
131 AACTCTCGGTCCAGCTGGGGCTTAGACAT
*
29956594 GGAATGAACTCCTTATGCCTAAGCCAACCCA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCA
29956625 CAAAACGGAC
Statistics
Matches: 159, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
158 37 0.23
159 120 0.75
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGCACGAGCGCTCAGCCAGTCGAAA
AGACAGAATGCGCAAGCCGAGAATCGACCCGATCCCACTCTGCGTGCTGCTGGTCCCGCTGCCAC
AACTCTCGGTCCAGCTGGGGCTTAGACAT
Found at i:29956667 original size:159 final size:159
Alignment explanation
Indices: 29956336--29956696 Score: 429
Period size: 159 Copynumber: 2.3 Consensus size: 159
29956326 TTGAGCCGGT
* * * * * *
29956336 CGGAGAGGCATAATGCGCAAGCCGAGAATCGACCCGATCGCACTCTGCGTGCTGTCGGTCCCGCT
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCT
* *
29956401 GCCACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
66 GCCACAACCTTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
** * *
29956466 TGAAACGGGCGCACGGGCGCTCAGCCAGT
131 CAAAACGGACGCACGGGCGCTCAGCCAGC
* * ** *
29956495 CGAAAAGATAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTG-CTGGTCCCGT
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTC-GGTCCCGC
* * *
29956559 TGCCAGAA-CTCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACC
65 TGCCACAACCT-TCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
*** **
29956623 CACAAAACGGACGTGTGGGCGCTCAGCTGGC
129 CACAAAACGGACGCACGGGCGCTCAGCCAGC
* * * *
29956654 CGGAGAGGCAGAATGCACAAGTCAGGGATCGGCCCGGTCCCCC
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
29956697 CTATGTAATG
Statistics
Matches: 167, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
158 3 0.02
159 164 0.98
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (159 bp):
CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCT
GCCACAACCTTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CAAAACGGACGCACGGGCGCTCAGCCAGC
Found at i:29956784 original size:26 final size:26
Alignment explanation
Indices: 29956755--29956807 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29956745 CCGGTCTGAT
* *
29956755 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATCAACGCCGTATG
29956781 CTTAGACATGGAATCAACGCCGTATG
1 CTTAGACATGGAATCAACGCCGTATG
29956807 C
1 C
29956808 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATCAACGCCGTATG
Found at i:29957126 original size:26 final size:26
Alignment explanation
Indices: 29957097--29957150 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
29957087 GGTTCGATCG
29957097 TAGACTGGGAATGAACT-TCGTATGCT
1 TAGACTGGGAATGAACTCT-GTATGCT
*
29957123 TAGACTGGGGATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
29957149 TA
1 TA
29957151 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:29957575 original size:26 final size:26
Alignment explanation
Indices: 29957526--29957575 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
29957516 GGCTCAAACT
* *
29957526 CTTAGACTTAGAATGAACTTCGTAAG
1 CTTAGACATAGAATGAACTCCGTAAG
* *
29957552 CTTAGACATGGAATGAGCTCCGTA
1 CTTAGACATAGAATGAACTCCGTA
29957576 TGCCTAAGCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTAAG
Done.