Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 322 of 402
Found at i:29957910 original size:25 final size:25
Alignment explanation
Indices: 29957882--29957931 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
29957872 CGGTCTGATC
29957882 TTAGAC-TGGGAATGAACTCTGTATG
1 TTAGACAT-GGAATGAACTCTGTATG
*
29957907 TTAGACATGGAATGAACTTTGTATG
1 TTAGACATGGAATGAACTCTGTATG
29957932 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (25 bp):
TTAGACATGGAATGAACTCTGTATG
Found at i:29958402 original size:26 final size:26
Alignment explanation
Indices: 29958366--29958418 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29958356 CCGATCTGAT
*
29958366 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29958392 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29958418 C
1 C
29958419 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29958915 original size:159 final size:156
Alignment explanation
Indices: 29958535--29959137 Score: 551
Period size: 159 Copynumber: 3.8 Consensus size: 156
29958525 GCCAGTCCTA
* ***
29958535 CTGCCACAACCCTCGGTCCGACTGGGG-TTAGACATGGAATGAACTCTGGATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * ** *
29958599 CATGAAACAAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAAAATGCACAAGCCGGGGATCGACC
66 CATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACC
* *
29958664 CAGTCCCC-CT-TGTGCTGTCGATCCTG
131 GA-TCCCCTCTGTGTGCTGTCGGTCC-G
* * * ** * * * *
29958690 CTGCCGCAACCCTCGGTCTGG-TCCGATCTTGGAC-TGGGAATGAACTTCGTATGCCTAAGTCAA
1 CTGCCACAACCCTCGGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA
* * ** * * *
29958753 CCCATGAAACGAGCGTGCGGGTGCTGAGTTGACTGGAGAGGCATAATGCGTAACCCGGGGATCGA
64 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCGA
29958818 CTCGATCACCCTCTGTGTGCTGTCGGTCTCG
129 C-CGATC-CCCTCTGTGTGCTGTCGGTC-CG
* *
29958849 CTGGCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * * *
29958914 CATGAAACGGGCACGCGGGCACTCAGCC-AGC-GGAAAAGGTAAAATGCGCAAGCCGGGGATCGG
66 CATGAAACGAGCGTGCGGGCGCTCAGCCGA-CTGG-AGAGGCAAAATGCGCAAGCCGGGGATC-G
* *
29958977 CCCGATCCCCCTCTGTGTGCTG-CTAGTCCCG
128 ACCGAT-CCCCTCTGTGTGCTGTC-GGT-CCG
* * * **
29959008 TTGCCAGAACCCTCTGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * *
29959073 CACGAAATG-GACGTACGGGCGCTCAGCTG-GTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGA
66 CATGAAACGAG-CGTGCGGGCGCTCAGCCGACT-GGAGAGGCAAAATGCGCAAGCCGGGGATCGA
29959136 CC
129 CC
29959138 TGGTCCCCCT
Statistics
Matches: 356, Mismatches: 72, Indels: 37
0.77 0.15 0.08
Matches are distributed among these distances:
154 1 0.00
155 20 0.06
156 84 0.24
157 5 0.01
158 10 0.03
159 227 0.64
160 9 0.03
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (156 bp):
CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACC
GATCCCCTCTGTGTGCTGTCGGTCCG
Found at i:29959233 original size:26 final size:26
Alignment explanation
Indices: 29959204--29959256 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29959194 CTGGTCCGAT
* *
29959204 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACGCCGTATG
29959230 CTTAGACATGGAATGAACGCCGTATG
1 CTTAGACATGGAATGAACGCCGTATG
29959256 C
1 C
29959257 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACGCCGTATG
Found at i:29959582 original size:26 final size:26
Alignment explanation
Indices: 29959546--29959598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29959536 CTGGTCTGAT
*
29959546 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29959572 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29959598 C
1 C
29959599 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29961707 original size:26 final size:26
Alignment explanation
Indices: 29961678--29961730 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29961668 CTGCTCTGAT
*
29961678 CTTAGACTA-GGAATGATCTCCATATG
1 CTTAGA-TATGGAATGAACTCCATATG
*
29961704 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATATGGAATGAACTCCATATG
29961730 C
1 C
29961731 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGATATGGAATGAACTCCATATG
Found at i:29962088 original size:159 final size:158
Alignment explanation
Indices: 29961704--29962088 Score: 393
Period size: 159 Copynumber: 2.4 Consensus size: 158
29961694 TCTCCATATG
*
29961704 CTTAGA-TATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGA--GTGCATGGGCGCTC
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAG-TAACCCATGAAACGAGCGTGC--GGGCGCTC
* ** * * * * * *
29961766 AACCATCCGGAGAGGTAGAATGCGTATGTCGGGAACCGACCCAATCCCCTCCTGTATGCTGTCGA
62 AGCCGGCCAGAAAGGCAGAATGCGCAAGTCGGGAACCGACCCAATCCCCTCCTGCATGCTGTCGA
* *
29961831 TCTTGCTATCGGAACCCTCAATCCATTCCGAT
127 TCTTGCTACCGGAACCCTCAATCCAGTCCGAT
* * * * * * *
29961863 CTTAGACTAGGAATGAACTCCGTATCCCAAAGTCAACCCATGAAACCAGCATTCGGACGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGT-AACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
29961928 CGGCCAGAAAGGCATAATGCGCAAGTCGGGGATCGACTCGATCCCC-CTCTGCATGCTGTCGATC
65 CGGCCAGAAAGGCAGAATGCGCAAGTCGGGAACCGACCCAATCCCCTC-CTGCATGCTGTCGAT-
* * **
29961992 CTT-CTACCGTAACCCTCAGTCTGGTCCGAT
128 CTTGCTACCGGAACCCTCAATCCAGTCCGAT
* *
29962022 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGT-AACCCATGAAACGAGCGTGCGGGCGCTCAGC
29962087 CG
65 CG
29962089 ATCGGAGAGG
Statistics
Matches: 182, Mismatches: 38, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
158 2 0.01
159 173 0.95
160 5 0.03
161 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAAAGGCAGAATGCGCAAGTCGGGAACCGACCCAATCCCCTCCTGCATGCTGTCGATCTT
GCTACCGGAACCCTCAATCCAGTCCGAT
Found at i:29962675 original size:32 final size:32
Alignment explanation
Indices: 29962611--29962675 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
29962601 GGGAGCTCAA
* *
29962611 GTCGGGGATCAGCCCGGTTCCCCCTACTTGTT
1 GTCGGGGATCAGCCCGGTCCCCCCTACATGTT
*
29962643 GTCGGGGATC-GACCCGGTCCCCCCTGCATGTT
1 GTCGGGGATCAG-CCCGGTCCCCCCTACATGTT
29962675 G
1 G
29962676 CCAATCCTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 1 0.03
32 28 0.97
ACGTcount: A:0.09, C:0.35, G:0.31, T:0.25
Consensus pattern (32 bp):
GTCGGGGATCAGCCCGGTCCCCCCTACATGTT
Found at i:29962763 original size:26 final size:26
Alignment explanation
Indices: 29962712--29962764 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29962702 CCGATCCGAT
***
29962712 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29962738 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
29962764 C
1 C
29962765 CTAAGTCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29963483 original size:26 final size:26
Alignment explanation
Indices: 29963446--29963497 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29963436 GCTCAAACTT
29963446 TTAGACTGGGAATGAAATACGTATGC
1 TTAGACTGGGAATGAAATACGTATGC
* *
29963472 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAAATACGTATGC
29963498 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATACGTATGC
Found at i:29964789 original size:171 final size:172
Alignment explanation
Indices: 29964481--29964804 Score: 413
Period size: 171 Copynumber: 1.9 Consensus size: 172
29964471 CGTATGCTAG
* * * *
29964481 ATGGGATGAACTCTGTATGCCTAAGTCAAACCCATGGAACGAGCGTGTGGGCACTGAATCGGTCG
1 ATGGAATGAACTCTGTATGCCTAAGTCAAACCCATGAAACGAGCGTGCGGGCACTGAACCGGTCG
* * * * *
29964546 GAGAGGCAAAATACGTATGTCGGGGATCAGCTCGGTCCCCCTCTACGTGCTGTTGATCCTGCTGC
66 GAGAGGCAAAATACGCAAGTCGAGGATCAGCTCGGTCCCCCTCTACGTGCTGTCGATCCTACTGC
29964611 CGGTCCTGCTGCCACAACCCTCGATCCGATTGGGGCTTAGAC
131 CGGTCCTGCTGCCACAACCCTCGATCCGATTGGGGCTTAGAC
* ** * *
29964653 ATGGAATGAACT-TCGTATGCCTAAG-CCAACCCATGAAACGAGCGTGCGGGTGCTTAGCCGGTC
1 ATGGAATGAACTCT-GTATGCCTAAGTCAAACCCATGAAACGAGCGTGCGGGCACTGAACCGGTC
* * *
29964716 GGAGAGGCATAATGCGCAAGTCGAGGATCAGC-CTGGTCCACCC-CTGCGTGCTGTCGATCCTAC
65 GGAGAGGCAAAATACGCAAGTCGAGGATCAGCTC-GGTCC-CCCTCTACGTGCTGTCGATCCTAC
* * *
29964779 TGCTGGTCCTGCTGTCGCAACCCTCG
128 TGCCGGTCCTGCTGCCACAACCCTCG
29964805 GTCTGATCCA
Statistics
Matches: 129, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
170 1 0.01
171 103 0.80
172 25 0.19
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (172 bp):
ATGGAATGAACTCTGTATGCCTAAGTCAAACCCATGAAACGAGCGTGCGGGCACTGAACCGGTCG
GAGAGGCAAAATACGCAAGTCGAGGATCAGCTCGGTCCCCCTCTACGTGCTGTCGATCCTACTGC
CGGTCCTGCTGCCACAACCCTCGATCCGATTGGGGCTTAGAC
Found at i:29965142 original size:159 final size:158
Alignment explanation
Indices: 29964840--29965189 Score: 411
Period size: 159 Copynumber: 2.2 Consensus size: 158
29964830 GAACTCCATA
* * *
29964840 AGCTTAGACATGGAATGAACTTTGTATGCCTAAAACAACCCACGAAACAAACGTGCAGGCGCTCA
1 AGCTTAGACATGGAATGAACTCTGTATGCCTAAAACAACCCACAAAACAAACGTACAGGCGCTCA
* * *
29964905 GTCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATC
66 GTCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATC
* * *
29964970 CTGCTATCGCAACCCTCGGTCCTATCT-G
131 CTGCTACCACAACCCTCGGTCCGA-CTGG
* ** * * *
29964998 ATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCCACAAAACAAGCGTACGGGCGTT
1 AGCTTAGACAT-GGAATGAACTCTGTATGCCTAAAACAA-CCCACAAAACAAACGTACAGGCGCT
* * * * *
29965062 GAG-CTGACCGGAGAGGCATAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTT
64 CAGTC-GACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCC-CTACGTGCTATC
*
29965126 GGTCCTGCT-CCACAACCCTCGGTCCGACTGG
127 GATCCTGCTACCACAACCCTCGGTCCGACTGG
* **
29965157 GGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 AGCTTAGACATGGAATGAACTCTGTATGCCTAA
29965190 CCCAAACCAT
Statistics
Matches: 161, Mismatches: 25, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
157 1 0.01
158 35 0.22
159 107 0.66
160 18 0.11
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
AGCTTAGACATGGAATGAACTCTGTATGCCTAAAACAACCCACAAAACAAACGTACAGGCGCTCA
GTCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATC
CTGCTACCACAACCCTCGGTCCGACTGG
Found at i:29965346 original size:26 final size:26
Alignment explanation
Indices: 29965317--29965369 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29965307 CCAGTTTGAT
29965317 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
29965343 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
29965369 C
1 C
29965370 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29966073 original size:26 final size:26
Alignment explanation
Indices: 29966037--29966089 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29966027 GGCTCAAACT
29966037 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
29966063 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29966089 C
1 C
29966090 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:29966275 original size:26 final size:26
Alignment explanation
Indices: 29966246--29966298 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29966236 CTGGTCTGAT
29966246 CTTAAAC-TGGGAATGAACTCTGTATG
1 CTTAAACAT-GGAATGAACTCTGTATG
*
29966272 CTTAGACATGGAATGAACTCTGTATG
1 CTTAAACATGGAATGAACTCTGTATG
29966298 C
1 C
29966299 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCTGTATG
Found at i:29967143 original size:26 final size:26
Alignment explanation
Indices: 29967107--29967159 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29967097 CCGGTTCGAT
*
29967107 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29967133 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29967159 C
1 C
29967160 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29968059 original size:26 final size:25
Alignment explanation
Indices: 29968020--29968068 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
29968010 CCGGTTCGAT
29968020 CTTAGACTGGAATGAACTCTGTAGG
1 CTTAGACTGGAATGAACTCTGTAGG
29968045 CTTAGACATGGAATGAACTCTGTA
1 CTTAGAC-TGGAATGAACTCTGTA
29968069 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTAGG
Found at i:29968434 original size:704 final size:700
Alignment explanation
Indices: 29967064--29968741 Score: 2020
Period size: 704 Copynumber: 2.4 Consensus size: 700
29967054 ACCCTCAGTC
* *
29967064 TGTGCTACCGA-CCTTACTATCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCT
1 TGTGCTACCGATCC-TACTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCC
*
29967128 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGC
65 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
** * * * *
29967193 TCAACCGATCAAAGAGGTCGGTCGGAGAGGCCA-AATGTGCAAGCCGAGGATCGGCCTAGGCCCC
130 TCAACCGATCGGAGA-GTCGGTCGGAGAGG-CAGAATGCGCAAGCTGAGGATCGACCTGGGCCCC
* *
29967257 CCTACATGCTGCCGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGA
193 CCTACATGCTGCCGATCCTGCTGCTGGTCCTACTGCCACAACCCTCGGTCCGGTTCGATCTTAGA
* *
29967322 TTGGGAATGAACTCTGTATGCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAA
258 CT-GGAATGAACTCTGTAGGCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAA
* * * * * *
29967387 TGAGCGTACGGGTGCTCAGTCGTCGGAGAGGCAGAATCCGTAAGTCGAGGATCAGCCCGGTCCCC
322 CGAGCGTACGGGTGCTCAGTCGTCAGAGAGGCAGAATCAGCAAGCCGAGGATCAGCCCGATCCCC
* ** *
29967452 CCTGCGTGCTATCGATCCTGCTACCGTAATCCTTGATCCAATCTTAGACTGGGAATGAGCTCCAT
387 CCTGCGTGCTATCGATCCTACTACCACAATCCTAGATCCAATCTTAGACTGGGAATGAGCTCCAT
* * * ** * *
29967517 ATGCCTAAGATAACCCATGAAATGAGCGTTCGGGTGCTGTGCCAGCCGGAGAGGCATAATACGCA
452 ATGCCTAAGACAACCCATAAAACGAGCGTTCGGGTGCTAAGCCAACCAGAGAGGCATAATACGCA
*** * ** * * *
29967582 TACCGATAATTGGCCTGGTCCCCCTTTGCGTGATGTCGATCCCGCTGCCACAACCCTCGGTCCGG
517 TACCGATAATCAACCTGGTCCCCCTCTGCGTGATACCGATCCCGCTACCACAACCCTCGATCCGA
* * * *
29967647 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCAAACCCATGAAATTGGCGTGCTGACG
582 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCAAACCCACGAAACTAGCATGCTGACG
* *
29967712 CTCAGCCGACCAGAGAGGCAGAATGCGCAAGCC-GAGGATCGGCCCGATACCCCATA
647 CTCAACCGACCAGAGAGGCA-AATGCGCAAGCCAG-GGATCGGCCAG-TACCCCATA
* * * * *
29967768 TGTGCTACCGATCCTATTGTCGTAACCCTCGATCCGGTTCAATCTTAGAATGGGAATGAACTCCA
1 TGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCG
* **
29967833 TATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
66 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * *
29967898 TAACCGGTTGGAGATGTCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCTGGGCCCCCC
131 CAACCGATCGGAGA-GTCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCTGGGCCCCCC
* *
29967963 TACATGCTGTCGATCCTGCTGCTGGTCCTACTGCTACAACCCTCGGTCCGGTTCGATCTTAGACT
195 TACATGCTGCCGATCCTGCTGCTGGTCCTACTGCCACAACCCTCGGTCCGGTTCGATCTTAGACT
* *
29968028 GGAATGAACTCTGTAGGCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCACGGAACG
260 GGAATGAACTCTGTAGGCTTAGACATGGAATAAACTTC-GTATGCCTAAGCCAACCCACGAAACG
* * *
29968092 AGCGTGCGGGTGCTCAGTCGATCAGAGAGGCAGAATGAGCAAGCCGGGGAT-AGGCCCGATCCCC
324 AGCGTACGGGTGCTCAGTCG-TCAGAGAGGCAGAATCAGCAAGCCGAGGATCA-GCCCGAT-CCC
* * * * * *
29968156 CCCTGCGTGCTGTCGATCGTACTGCCACAATCCTCAG-TCCGATCTTAGATTGGGAATGAGCTTC
386 CCCTGCGTGCTATCGATCCTACTACCACAATCCT-AGATCCAATCTTAGACTGGGAATGAGCTCC
* * * **
29968220 GTATGCCTAAGACAACCCATAAAACGAGTGTTCGGGTGCTAAGCCAATCAGAGAGGCATAATGTG
450 ATATGCCTAAGACAACCCATAAAACGAGCGTTCGGGTGCTAAGCCAACCAGAGAGGCATAATACG
* * * * * * * *
29968285 CA-AGTCGGTGATCAA-CTCGGT-CCTCTCTGTGTGCTACCGGTCTCGCTACCACAACCCTCGAT
515 CATA-CCGATAATCAACCT-GGTCCCCCTCTGCGTGATACCGATCCCGCTACCACAACCCTCGAT
* *
29968347 CCGACTGGGGTTTAGACATGGAATGAACTGCCTATGCCTAAGCC-AACCCACGAAACTAGCATG-
578 CCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA-CCAAACCCACGAAACTAGCATGC
** * * *
29968410 TGGGTGCTCAACCGACCGGAGAGGCAAATGCGCAAGCCAGGGATCGGCCAGTCCCCCTTA
642 T-GACGCTCAACCGACCAGAGAGGCAAATGCGCAAGCCAGGGATCGGCCAGTACCCCATA
* * ** * * * * * *
29968470 GGTACTGTCGATCCTGCTGCCGCAACCCTCGATCTGATTCGATATTAGACTGGGAATGAACTTCG
1 TGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCG
*
29968535 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCT
66 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * * * * *
29968600 CAATCGACCGGAGAGGCTGGTCGGAGAGGC-GTAATGCGCAAG-TCAGGGATC-AGCTCGGTCCC
131 CAACCGATCGGAGAGTC-GGTCGGAGAGGCAG-AATGCGCAAGCTGA-GGATCGACCT-GGGCCC
* * * * **
29968662 CCTCTACATGCTACCGATCC-ACTG-TCGGTCCTACTACCACAACCCTCGGTCCGGTTGGGGCTT
192 CC-CTACATGCTGCCGATCCTGCTGCT-GGTCCTACTGCCACAACCCTCGGTCCGGTTCGATCTT
29968725 AGACATGGAATGAACTC
255 AGAC-TGGAATGAACTC
29968742 CCTATGCCTA
Statistics
Matches: 829, Mismatches: 126, Indels: 39
0.83 0.13 0.04
Matches are distributed among these distances:
701 9 0.01
702 202 0.24
703 129 0.16
704 366 0.44
705 122 0.15
706 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (700 bp):
TGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
CAACCGATCGGAGAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCTGGGCCCCCCT
ACATGCTGCCGATCCTGCTGCTGGTCCTACTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTG
GAATGAACTCTGTAGGCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAACGAG
CGTACGGGTGCTCAGTCGTCAGAGAGGCAGAATCAGCAAGCCGAGGATCAGCCCGATCCCCCCTG
CGTGCTATCGATCCTACTACCACAATCCTAGATCCAATCTTAGACTGGGAATGAGCTCCATATGC
CTAAGACAACCCATAAAACGAGCGTTCGGGTGCTAAGCCAACCAGAGAGGCATAATACGCATACC
GATAATCAACCTGGTCCCCCTCTGCGTGATACCGATCCCGCTACCACAACCCTCGATCCGACTGG
GGCTTAGACATGGAATGAACTCCCTATGCCTAACCAAACCCACGAAACTAGCATGCTGACGCTCA
ACCGACCAGAGAGGCAAATGCGCAAGCCAGGGATCGGCCAGTACCCCATA
Found at i:29968543 original size:26 final size:26
Alignment explanation
Indices: 29968514--29968565 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29968504 TGATTCGATA
*
29968514 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
29968540 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
29968566 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:29968916 original size:26 final size:26
Alignment explanation
Indices: 29968880--29968932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29968870 CTGGTCTGAT
29968880 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29968906 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29968932 C
1 C
29968933 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29969219 original size:12 final size:12
Alignment explanation
Indices: 29969202--29969236 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
29969192 GTGCTGTCGA
29969202 TCCTACTACTGG
1 TCCTACTACTGG
*
29969214 TCCTACTGCTGG
1 TCCTACTACTGG
29969226 TCCTACTACTG
1 TCCTACTACTG
29969237 CAACCCTCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.14, C:0.34, G:0.17, T:0.34
Consensus pattern (12 bp):
TCCTACTACTGG
Found at i:29970507 original size:26 final size:26
Alignment explanation
Indices: 29970469--29970547 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
29970459 GGCTCAAAAT
29970469 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29970495 CTTAGACATGGAATGAACTCCGGATG
1 CTTAGACATGGAATGAACTCCGTATG
*
29970521 CTTAGACATGGAATGAACTCAGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29970547 C
1 C
29970548 CTAAGGCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29971047 original size:26 final size:26
Alignment explanation
Indices: 29970996--29971048 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29970986 CCGACCGGAT
**
29970996 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
29971022 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
29971048 C
1 C
29971049 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:29972047 original size:158 final size:155
Alignment explanation
Indices: 29971757--29972240 Score: 472
Period size: 158 Copynumber: 3.1 Consensus size: 155
29971747 TTAGACATGT
* *
29971757 AATGAACTCCGTATGCCTAAGAT-AACCCACGAAAGGAGCGTGCGGGCGCTCAGTCGGCCAGAGT
1 AATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GCCA-AGA
* ** * * **
29971821 GGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCCTACGTGCTATCGATCCTGCTGCCGTA
63 GGCAGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGT-GATCCTGCTGCCACA
* * *
29971886 ACCCTCAGTTTGGTCTGATCATAGATTAGG
126 ACCCTCGGTCTGGTCTGATCTTAGATTAGG
* * * * *
29971916 AATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCGAAGAGG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GCCAAGAGG
* * *
29971981 CATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTGGGTCCTGCTGCCACAAC
65 CAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGT-GATCCTGCTGCCACAAC
** *
29972046 CCTCGGTCTGG-CTGGGGCTTAGA-CATGG
128 CCTCGGTCTGGTCT-GATCTTAGATTA-GG
* * * * * * **
29972074 AATGAACTGCC-TATGCCTAAGCCAACACACGAAATGGGCGTGCCGGTGCTCAGTCGACTTTAGA
1 AATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG-C-CAAGA
** * *
29972138 GGCAGAATGCATAAGTCGGCGATCGGCCCAGTCCCCCCTGCGTGCTGCTGATCCTGCTGCCACAA
63 GGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTG-TGATCCTGCTGCCACAA
* *
29972203 CCCTTGGTCTGGTCCGATCTTAGATTAGG
127 CCCTCGGTCTGGTCTGATCTTAGATTAGG
*
29972232 AATCAACTC
1 AATGAACTC
29972241 TGTGTGCTTA
Statistics
Matches: 265, Mismatches: 50, Indels: 22
0.79 0.15 0.07
Matches are distributed among these distances:
157 10 0.04
158 164 0.62
159 91 0.34
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (155 bp):
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGCCAAGAGGC
AGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTGATCCTGCTGCCACAACCCT
CGGTCTGGTCTGATCTTAGATTAGG
Found at i:29973015 original size:25 final size:25
Alignment explanation
Indices: 29972946--29973022 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 25
29972936 CTCAAAATCT
* * * *
29972946 TTAGACTAGGAATGAAATCCATACGC
1 TTAGAC-ATGAATGAACTCCGTATGC
29972972 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACAT-GAATGAACTCCGTATGC
29972998 TTAGACATGAATGAACTCCGTATGC
1 TTAGACATGAATGAACTCCGTATGC
29973023 CTAAGCCAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
25 18 0.39
26 28 0.61
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (25 bp):
TTAGACATGAATGAACTCCGTATGC
Found at i:29973290 original size:158 final size:157
Alignment explanation
Indices: 29972997--29973374 Score: 381
Period size: 158 Copynumber: 2.4 Consensus size: 157
29972987 ACTCCGTATG
* *
29972997 CTTAGACATGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGCGGGTGCTCAGCC
1 CTTAGACAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCC
* * ***
29973062 GACCAGAGAGGCAAAATGTGCAAGTCGAGGATCGGCCCAATCCCCCCTACGTGCTGTCAATCTTG
66 GACCAGAGAGGCAAAATGTGCAAGTCCAGGATCGGCCCAATCCCCCCTACGTGCTATCAATCCCA
29973127 CTGCCACAACCCTCGGTCCAGGCCGAT
131 CTGCCACAACCCTCGGTCCAGGCCGAT
* * *
29973154 CTTAGACTAGGAATGAACTCTGTAT-CCATAAGTCAACCCACGAAACGAGCATGCGGGTGCTGAG
1 CTTAGAC-AGGAATGAACTCCGTATGCC-TAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* * * * ** * **
29973218 CTGGCC-GAAGAGGCATAATGTGCAAG-CCAGGATTGGCCCGGTCCCCCTTTACGTGCTATCGGT
64 CCGACCAG-AGAGGCAAAATGTGCAAGTCCAGGATCGGCCCAATCCCCC-CTACGTGCTATCAAT
* * * **
29973281 CCCATTGCCACAACCCTCGGT-CTGGCTAGGG
127 CCCACTGCCACAACCCTCGGTCCAGGC-CGAT
* * * * *
29973312 CTTACACATGGAACGAACTTCC-TATGCGTAAGCCAACCCACTAAAC-ATGCGTGCGGGTGCTCA
1 CTTAGACA-GGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGA-GCATGCGGGTGCTCA
29973375 ACTGGCTGGA
Statistics
Matches: 180, Mismatches: 32, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
157 33 0.18
158 144 0.80
159 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCC
GACCAGAGAGGCAAAATGTGCAAGTCCAGGATCGGCCCAATCCCCCCTACGTGCTATCAATCCCA
CTGCCACAACCCTCGGTCCAGGCCGAT
Found at i:29973522 original size:26 final size:26
Alignment explanation
Indices: 29973470--29973522 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29973460 CTGATCCTAT
* *
29973470 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
29973496 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
29973522 C
1 C
29973523 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:29974230 original size:26 final size:26
Alignment explanation
Indices: 29974192--29974244 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29974182 GGCTCAAAAT
29974192 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29974218 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29974244 C
1 C
29974245 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29974516 original size:159 final size:157
Alignment explanation
Indices: 29974336--29974720 Score: 380
Period size: 159 Copynumber: 2.4 Consensus size: 157
29974326 CCCCCGTGCT
* * * *
29974336 TGCTGTCGATCCTGCTGCCATAACCCTCAGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGACGATCCTACTACCATAACCCTCAGTTCGGTCTGATCTTAGACT-GGAATGAACTCCGTA
* * * * * *
29974401 TGCATAAGTCAACCCATGAAATGAGCGTACGAGCGCTGAGCCGACCGAAGAGGCATAATGCACAA
65 TGCATAAGCCAACCCATAAAACGAGCGTACGAGCACTCAGCCGACCGAAGAGGCAAAATGCACAA
* * *
29974466 GCCGGGGATCAGCCCGATCCCCCTCTGCG
130 GCAGGGGATCAGCACGATCCCCC-CTACG
* * **
29974495 TGCT-ACAGATGCC-ACTACCATAACCCTCAATCCGG-CTGGGGCTTAGACATGGAATGAACTCC
1 TGCTGAC-GAT-CCTACTACCATAACCCTCAGTTCGGTCT-GATCTTAGAC-TGGAATGAACTCC
* * * * * * * *
29974557 CTATGCCTAAGCCAACCCATAAAACGGGCGTGCGTGCACTCAGCCGGCCGGAGAGGTAAAATGCA
62 GTATGCATAAGCCAACCCATAAAACGAGCGTACGAGCACTCAGCCGACCGAAGAGGCAAAATGCA
* * *
29974622 CAAGTAGGGGATCAGCATGGTCCCCCCTACG
127 CAAGCAGGGGATCAGCACGATCCCCCCTACG
* * ** * *
29974653 TGCTGTCGATCCTACTGCCGCAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGAACTCCGTA
1 TGCTGACGATCCTACTACCATAACCCTCAGTTCGGTCTGATCTTAGACT-GGAATGAACTCCGTA
29974718 TGC
65 TGC
29974721 TTAGACTGTG
Statistics
Matches: 179, Mismatches: 39, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.02
158 54 0.30
159 119 0.66
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
TGCTGACGATCCTACTACCATAACCCTCAGTTCGGTCTGATCTTAGACTGGAATGAACTCCGTAT
GCATAAGCCAACCCATAAAACGAGCGTACGAGCACTCAGCCGACCGAAGAGGCAAAATGCACAAG
CAGGGGATCAGCACGATCCCCCCTACG
Found at i:29975102 original size:26 final size:26
Alignment explanation
Indices: 29975073--29975125 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29975063 CCAATCCGAT
29975073 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29975099 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29975125 C
1 C
29975126 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29977239 original size:25 final size:25
Alignment explanation
Indices: 29977201--29977251 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
29977191 CCAATCTAAT
29977201 CTTAGACTGGAATGAACTC-GTATG
1 CTTAGACTGGAATGAACTCTGTATG
29977225 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCTGTATG
29977251 C
1 C
29977252 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 7 0.28
25 12 0.48
26 6 0.24
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:29978458 original size:26 final size:26
Alignment explanation
Indices: 29978420--29978472 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29978410 GGCTCAAACT
29978420 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29978446 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29978472 C
1 C
29978473 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29978791 original size:26 final size:25
Alignment explanation
Indices: 29978762--29978813 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
29978752 CCGGTCTGAT
*
29978762 CTTAAACTAGGAATGAACTCTGTATG
1 CTTAAACT-GGAATGAACTCCGTATG
* *
29978788 CTTAGACTGGGATGAACTCCGTATG
1 CTTAAACTGGAATGAACTCCGTATG
29978813 C
1 C
29978814 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAAACTGGAATGAACTCCGTATG
Found at i:29979046 original size:26 final size:26
Alignment explanation
Indices: 29979010--29979062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29979000 CCTGTTTGAT
29979010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29979036 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29979062 C
1 C
29979063 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29980085 original size:26 final size:26
Alignment explanation
Indices: 29980056--29980108 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29980046 CCAGCCTGAT
*
29980056 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATAAACTCCATATG
*
29980082 CTTAGACTAGGGATAAACTCCGTATG
1 CTTAGACTAGGGATAAACTCCATATG
29980108 C
1 C
29980109 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCATATG
Found at i:29980845 original size:26 final size:26
Alignment explanation
Indices: 29980809--29980858 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
29980799 CCAGTCTAAT
29980809 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
29980835 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
29980859 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:29980998 original size:362 final size:367
Alignment explanation
Indices: 29980435--29981116 Score: 851
Period size: 362 Copynumber: 1.9 Consensus size: 367
29980425 GCAACTCTCA
* * * *
29980435 GTCCAGTCTGATCTTAGACTAGCAATGAACTCCATATGCTTAGACTAGGGATGAGCTCCGTTTGC
1 GTCCAGTCTAATCTTAGACTAGCAATGAACTCCATAAGCTTAGACTAGGGATGAACTCCGTATGC
* ** * *
29980500 CTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGACCGAAGAGGCCGGTCGGAGAGGCA
66 CTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAGTCGACCGAAGAGGCCGATCGAAGAGGCA
** * * * * * *
29980565 TAATGTGCAAGCCGAGGATTAGCTCGATCCCTCTTTACGTGCTGCCAATCATGCTGCCCGTCTTG
131 TAATGCACAAGCCGAGGATCAGCTCGATCCCTCTCTACGTGCTGCCAATCACGCTACCCGTCCTA
* * *
29980630 CTACCACAA-CC-C-T-TGGTT-CGGTTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
196 CTACCACAACCCTCGTCTAGTTGCGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
*
29980690 ACAAAACGAGCATACGGGCACTCAA-TCGGTCGGAGAGGCAAAATGA-GCAAGCCGAGGATCGAT
261 ACAAAACGAGCATACGGGCACTCAACT-GATCGGAGAGGCAAAAT-ACGCAAGCCGAGGATCGAT
29980753 CCGATCCCCCCTGCATTCTGTCGATCCTACTGCTACAAACCTAG
324 CCGATCCCCCCTGCATTCTGTCGATCCTACTGCTACAAACCTAG
* * * *
29980797 GTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGGATGAACTCCGTATGC
1 GTCCAGTCTAATCTTAGACTAGCAATGAACTCCATAAGCTTAGACTAGGGATGAACTCCGTATGC
* * * *
29980862 CTAAGTCAACCCATAAAACGAGTGTGCGGGCACTGAGTCGACCGAAGAGGCCGATCGAAGAGGCA
66 CTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAGTCGACCGAAGAGGCCGATCGAAGAGGCA
* * * * * * * * *
29980927 TAATGCATAAGCCGGGGATCAGC-CTGGTCTCC-CTCTACGTGTTGTCGATCCCGTTACCGGTCC
131 TAATGCACAAGCCGAGGATCAGCTC-GATC-CCTCTCTACGTGCTGCCAATCACGCTACCCGTCC
*
29980990 TACTACCACAACCCTCGGTCTAGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
194 TACTACCACAACCCTC-GTCTAGTTGCGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
** ** * *
29981055 CCCATGAAACGAGCATACGGGTGCTCAACTGATCGGAGAGGCAGAATACGCAAGTCGAGGAT
258 CCCACAAAACGAGCATACGGGCACTCAACTGATCGGAGAGGCAAAATACGCAAGCCGAGGAT
29981117 TGGGCTGGTC
Statistics
Matches: 265, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
361 1 0.00
362 165 0.62
363 4 0.02
364 1 0.00
366 1 0.00
367 5 0.02
368 87 0.33
369 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (367 bp):
GTCCAGTCTAATCTTAGACTAGCAATGAACTCCATAAGCTTAGACTAGGGATGAACTCCGTATGC
CTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAGTCGACCGAAGAGGCCGATCGAAGAGGCA
TAATGCACAAGCCGAGGATCAGCTCGATCCCTCTCTACGTGCTGCCAATCACGCTACCCGTCCTA
CTACCACAACCCTCGTCTAGTTGCGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACAAAACGAGCATACGGGCACTCAACTGATCGGAGAGGCAAAATACGCAAGCCGAGGATCGATCC
GATCCCCCCTGCATTCTGTCGATCCTACTGCTACAAACCTAG
Found at i:29981446 original size:158 final size:156
Alignment explanation
Indices: 29981158--29981688 Score: 521
Period size: 158 Copynumber: 3.4 Consensus size: 156
29981148 CTACTGCTGG
* *
29981158 TCCTGCTACCGCAACTCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
29981223 CAGCCCATGAAACGAGCGTGTGGCCGTTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCAGGGAT
66 CAACCCATGAAACGAACGTGAGGCC--TCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGAT
*
29981288 CGACACGATCCCCCCTGCGTGCTGTCGA
129 CGACCCGATCCCCCCTGCGTGCTGTCGA
* * *
29981316 TCCTGCTATCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
29981381 CAACCCACGAAACGAACGTGCAGGCACTGAGCCAGTCGGAAAGGCATAATGTGCAAGTCGGGGAT
66 CAACCCATGAAACGAACGTG-AGGC-CTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGAT
* * * *
29981446 CGGCCCGGTCCCCTTCTACGTGCTGTCGA
129 CGACCCGATCCCC-CCTGCGTGCTGTCGA
* * * * * ** *
29981475 T-CTCGCTGCCACAACCCTCGGT-TCGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTA
1 TCCT-GCTACCGCAACCCTCAGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
* * * * * * *
29981537 AGCCAACCCATGAAAC-AGACATGAGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCGTAAGCCGA
63 AGCCAACCCATGAAACGA-ACGTGA-GG-CCTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGG
* * * **
29981601 GGATCGACCCAATCCCTCTTGCGTGCTACCGA
125 GGATCGACCCGATCCCCCCTGCGTGCTGTCGA
** * * * *
29981633 TCCTGCTGTCGCAACCCTCAGCCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
1 TCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
29981689 GGCTTAGACT
Statistics
Matches: 297, Mismatches: 64, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 174 0.59
159 120 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (156 bp):
TCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAACGTGAGGCCTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCG
ACCCGATCCCCCCTGCGTGCTGTCGA
Found at i:29982436 original size:26 final size:26
Alignment explanation
Indices: 29982398--29982450 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29982388 GGCTCAAACT
*
29982398 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29982424 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29982450 C
1 C
29982451 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29982768 original size:158 final size:160
Alignment explanation
Indices: 29982424--29982768 Score: 423
Period size: 160 Copynumber: 2.2 Consensus size: 160
29982414 ACTCTGTATG
* *
29982424 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * ** *
29982489 CGGGCCGGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCTTGTTGCTGATC
66 CGAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCTACTTGCCGATC
* *
29982554 CGGCTGCCACAACCCTCGGTCTGGCTGGGA
131 CGGCTACCACAACCCTCGATCTGGCTGGGA
* * * * * *
29982584 CTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCTACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
29982649 C-AGCCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCCGATCCCCC-CTGCATACTT-CCGA
66 CGAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAG-CCCGATCCCCCTCTGC-TACTTGCCGA
* * * **
29982710 TCCTGCTACCGCAACCCTTGATCTGG-TTTGA
129 TCCGGCTACCACAACCCTCGATCTGGCTGGGA
29982741 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 -CTTAGACAT-GGAATGAACTCCGTATGC
29982769 TTAGACTAGG
Statistics
Matches: 158, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
157 4 0.03
158 52 0.33
159 44 0.28
160 58 0.37
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCTACTTGCCGATC
CGGCTACCACAACCCTCGATCTGGCTGGGA
Found at i:29982786 original size:25 final size:26
Alignment explanation
Indices: 29982742--29982793 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
29982732 CTGGTTTGAT
*
29982742 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29982768 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29982793 C
1 C
29982794 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:29983845 original size:26 final size:26
Alignment explanation
Indices: 29983816--29983868 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
29983806 CCGATCCAAT
29983816 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
29983842 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
29983868 C
1 C
29983869 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:29984067 original size:26 final size:26
Alignment explanation
Indices: 29984029--29984081 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29984019 CTGGTCTGAT
29984029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
29984055 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
29984081 C
1 C
29984082 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29990335 original size:26 final size:26
Alignment explanation
Indices: 29990306--29990358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29990296 CCGGTCCGAT
*
29990306 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
29990332 CTTAAACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
29990358 C
1 C
29990359 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:29990675 original size:26 final size:26
Alignment explanation
Indices: 29990646--29990698 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29990636 CCGGTCTGAT
*
29990646 CTTAGGTTGGGAATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
*
29990672 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
29990698 C
1 C
29990699 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCGTATG
Found at i:29991950 original size:26 final size:26
Alignment explanation
Indices: 29991921--29991971 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
29991911 CAGTCCGATC
* *
29991921 TTAGATTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
29991947 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
29991972 CCTAAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:29992629 original size:26 final size:26
Alignment explanation
Indices: 29992593--29992643 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
29992583 TGGTTTGATC
29992593 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
29992619 TTAGACTGGGAATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
29992644 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:29993813 original size:26 final size:26
Alignment explanation
Indices: 29993784--29993836 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29993774 CCGATCCGAT
*
29993784 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
29993810 CTTAGACTGGGGATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29993836 C
1 C
29993837 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29995067 original size:26 final size:26
Alignment explanation
Indices: 29995016--29995068 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
29995006 GGCTCAAAAT
*
29995016 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
29995042 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
29995068 C
1 C
29995069 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29995397 original size:158 final size:157
Alignment explanation
Indices: 29995041--29995461 Score: 431
Period size: 158 Copynumber: 2.6 Consensus size: 157
29995031 AACTCCGTAT
* * *
29995041 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAG-CAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * * * * *
29995106 CCGATTGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCAGTCCCCTCCTGCGTGCTGTCAATC
65 CCGGTCGAAGAGGCAGAATGCGCAAG-CGAGGATCGACCCAGTCCCCTCCTGCGTGCTGCCAATC
*
29995171 CTACTGCCACAACCCTCGATCTGATTCGA
129 CTACTGCCACAACCCTCGATCTGACTCGA
* * * * * ** *
29995200 TCCTAGAC-TGAGAATGAACTTCGTATG-CATAAGTCAACCCACGACATGAGCGTGCGGGCACTG
1 GCTTAGACATG-GAATGAACTCCATATGCCA-AAG-CAACCCACGAAATGAGCGTGCGGGTGCTC
* * * *
29995263 AGCAGGTCGAAGAGGCATAATGCGCAAGCCAGGATCGACCC-GATCCCC-CTCTGTGTGCTGCCA
63 AGCCGGTCGAAGAGGCAGAATGCGCAAGCGAGGATCGACCCAG-TCCCCTC-CTGCGTGCTGCCA
* * * * * *
29995326 GTCTTGCTGCCACAACCCTC-AGTCTGGCTGGG
126 ATCCTACTGCCACAACCCTCGA-TCTGACTCGA
*
29995358 GCTTAGACATGGAATGAACTCCATATGCCAAAGCAAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAGC-AACCCACGAAATGAGCGTGCGGGTGCTCAG
29995423 CCGGTC-AGAGAGGCAGAATGCGCAAGCTGAGGATCGACC
65 CCGGTCGA-AGAGGCAGAATGCGCAAGC-GAGGATCGACC
29995462 TGGTTCCCCC
Statistics
Matches: 210, Mismatches: 42, Indels: 20
0.77 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 122 0.58
159 83 0.40
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCAAAGCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCGAGGATCGACCCAGTCCCCTCCTGCGTGCTGCCAATCCT
ACTGCCACAACCCTCGATCTGACTCGA
Found at i:29996943 original size:26 final size:26
Alignment explanation
Indices: 29996914--29996965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29996904 CAGTCCGATT
29996914 TTAGACT-GAGAATGAACTCCGTATGC
1 TTAGACTAG-GAATGAACTCCGTATGC
*
29996940 TTAGACTAGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
29996966 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:29998153 original size:158 final size:158
Alignment explanation
Indices: 29997646--29998243 Score: 524
Period size: 159 Copynumber: 3.8 Consensus size: 158
29997636 GACTCCGTAT
* * * *
29997646 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** * * * * * * *
29997711 TTGGCCAGAGAGACAGAATGCGTAAGTCAGGGGATCAGCCCGAT-CCCCCTGCATGCTGTCGATC
66 CCGGCTGGAGAGGCAGAATGCGCAAG-CCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATC
* *
29997775 TTGTTGCCTCAACCCTCGGTCCGATCTGAT-
130 TCGTTGCCACAACCCTCGGTCCGA-CTG-TG
* * * * * ** * *
29997805 -CTTAGAC-TGGAAATGAACTTCGTATGCATAAGTCAGCCCATAAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
29997868 GCC-GATCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTACCGA
65 GCCGGCT-GGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCC-CTGCGTGCTGCCGA
* ** * * * * *
29997932 TCCCACTACCATAACCCTCGGTCTGGCTGGG
128 TCTCGTTGCCACAACCCTCGGTCCGACTGTG
* * * *
29997963 GCTTAGGCATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
29998028 CCAGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGGTCCCCCCGGTGTGCTGCCAATCT
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCT
29998093 CGTTGCCACAACCCTCGGTCCGACTGTG
131 CGTTGCCACAACCCTCGGTCCGACTGTG
* * * * *
29998121 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCCTACAGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCGCTCA
* * * * * *
29998186 ACCGGCTGGAGAGGTAGAATGCGCAAGCTGGGGATC-GACCTGGTCTCCCCTGCGTGCT
65 GCCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGGTCCCCCCTGCGTGCT
29998244 TTCGATCCTG
Statistics
Matches: 341, Mismatches: 88, Indels: 20
0.76 0.20 0.04
Matches are distributed among these distances:
157 15 0.04
158 155 0.45
159 166 0.49
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCT
CGTTGCCACAACCCTCGGTCCGACTGTG
Found at i:29998267 original size:317 final size:317
Alignment explanation
Indices: 29997646--29998243 Score: 665
Period size: 317 Copynumber: 1.9 Consensus size: 317
29997636 GACTCCGTAT
* * **
29997646 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
*** * * * * * *
29997711 TTGGCCAGAGAGACAGAATGCGTAAGTCAGGGGATCAGCCCGATCCCCCTGCATGCTGTCGATCT
66 CCAGCCAGAGAGACAGAATGCGCAAGTCAGAGGATCAACCCGATCCCCCGGCATGCTGCCAATCT
* * * * * *
29997776 TGTTGCCTCAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTTCGTATGCATAAGTCAG
131 CGTTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTCCCTATGCATAAGCCAA
* * * * * * * *
29997841 CCCATAAAACGAGCGTGCGGGTGCTGAGCCGATCGAAGAGGCATAATGCGTAAGTCGAGGATCGG
196 CCCATAAAACGAGCCTACGGGCGCTCAACCGATCGAAGAGGCAGAATGCGCAAGTCGAGGATCGA
29997906 CCTGGTCCCCCTCTGCGTGCTACCGATCCCACTACCATAACCCTCGGTCTGGCTGGG
261 CCTGGTCCCCCTCTGCGTGCTACCGATCCCACTACCATAACCCTCGGTCTGGCTGGG
* *
29997963 GCTTAGGCATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCA
1 GCTTAGACATGGAATCAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCA
** * * * **
29998027 GCCAGCTGGAGAGGCAGAATGCGCAAG-CCGAGGATCAACCCGGTCCCCCCGGTGTGCTGCCAAT
65 GCCAGCCAGAGAGACAGAATGCGCAAGTCAGAGGATCAACCCGAT-CCCCCGGCATGCTGCCAAT
29998091 CTCGTTGCCACAACCCTCGGTCCGA-CTG-TGGCTTAGACATGG-AATGAACTCCCTATG-ACTA
129 CTCGTTGCCACAACCCTCGGTCCGATCTGAT--CTTAGAC-TGGAAATGAACTCCCTATGCA-TA
* * * * *
29998152 AGCCAACCCATGAAACGGGCCTACAGGGCGCTCAACCG-GCTGGAGAGGTAGAATGCGCAAG-CT
190 AGCCAACCCATAAAACGAGCCTAC-GGGCGCTCAACCGATC-GAAGAGGCAGAATGCGCAAGTC-
* *
29998215 GGGGATCGACCTGGTCTCCC-CTGCGTGCT
252 GAGGATCGACCTGGTCCCCCTCTGCGTGCT
29998244 TTCGATCCTG
Statistics
Matches: 229, Mismatches: 43, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
315 1 0.00
316 17 0.07
317 164 0.72
318 47 0.21
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
CCAGCCAGAGAGACAGAATGCGCAAGTCAGAGGATCAACCCGATCCCCCGGCATGCTGCCAATCT
CGTTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTCCCTATGCATAAGCCAA
CCCATAAAACGAGCCTACGGGCGCTCAACCGATCGAAGAGGCAGAATGCGCAAGTCGAGGATCGA
CCTGGTCCCCCTCTGCGTGCTACCGATCCCACTACCATAACCCTCGGTCTGGCTGGG
Found at i:29998310 original size:26 final size:26
Alignment explanation
Indices: 29998281--29998330 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
29998271 CCGGTCTGAT
29998281 CTTAGACTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAATGAACTCTGTAAG
* * *
29998307 CTTAGATTGGGGATGAACTTTGTA
1 CTTAGACTGGGAATGAACTCTGTA
29998331 TGCCTAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAAG
Found at i:29998677 original size:26 final size:26
Alignment explanation
Indices: 29998648--29998700 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29998638 CCGATCTGAT
*
29998648 CTTAGA-ATGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAAGGAACTCTGTATG
29998674 CTTAGACATGGAAGGAACTCTGTATG
1 CTTAGACATGGAAGGAACTCTGTATG
29998700 C
1 C
29998701 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAAGGAACTCTGTATG
Found at i:29998874 original size:26 final size:26
Alignment explanation
Indices: 29998845--29998897 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29998835 CTGATCCGAT
29998845 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
29998871 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
29998897 C
1 C
29998898 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:29998972 original size:197 final size:197
Alignment explanation
Indices: 29998477--29998992 Score: 572
Period size: 197 Copynumber: 2.6 Consensus size: 197
29998467 TCCGACTGGG
* ** * * **
29998477 GCTTAGACATGGAATGAACTAC-GTATGCCTTAGCCAACAGACGAAATGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
** * ** * * * ** *
29998541 GTCGACTGGAGAGGCAGAATACGTAAGCCGGGGATC-GACTCGGT-CCCCCCTGCGTGCTGTCGA
65 ACCGGCCAGAGAGGCAGAATGCGAAAGCCGAGGATCAG-CTCGGTCCCCCCCTGCGTGCTACCAA
* * * * *
29998604 TCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGAATGGGAATGAACTCT
129 TCCTACTACTGGTCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGAATAGGAATGAACTCC
29998669 GTAT
194 GTAT
* * * *
29998673 GCTTAGACATGGAAGGAACTCTGTATGCCTAAGCCAACCCACAAAACGAACGTATGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
* * * * * * * *
29998738 CAGGCCAGAGAGGCAAAAAGTGCAAGCCAACGATCAGCCCGGTCCCCCCCTGCGTGCTACCAATC
66 CCGGCCAGAGAGGCAGAATGCGAAAGCCGAGGATCAGCTCGGTCCCCCCCTGCGTGCTACCAATC
* ** * *
29998803 CTACTACTGGTCCTGTTGCCGTAACCCTC-AGTCTGATCCGATCTTAGACTAGGAATGAACTCCG
131 CTACTACTGGTCCTGCTGCCACAACCCTCGA-TCCGATCCGATCTTAGAATAGGAATGAACTCCG
29998867 TAT
195 TAT
29998870 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
** * * *
29998935 CCGGCCAGAGAGATAGAATGCGAAAGTCGAGGATCAGCTCGATCCCCCCCTTCGTGCT
66 CCGGCCAGAGAGGCAGAATGCGAAAGCCGAGGATCAGCTCGGTCCCCCCCTGCGTGCT
29998993 GTCGATCCTG
Statistics
Matches: 260, Mismatches: 56, Indels: 7
0.80 0.17 0.02
Matches are distributed among these distances:
195 1 0.00
196 79 0.30
197 180 0.69
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
CCGGCCAGAGAGGCAGAATGCGAAAGCCGAGGATCAGCTCGGTCCCCCCCTGCGTGCTACCAATC
CTACTACTGGTCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGAATAGGAATGAACTCCGT
AT
Found at i:29999264 original size:159 final size:159
Alignment explanation
Indices: 29998870--29999272 Score: 413
Period size: 159 Copynumber: 2.5 Consensus size: 159
29998860 AACTCCGTAT
** * ***
29998870 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTGG
** * * *
29998935 CCGGCCAGAGAGATAGAATGCGAAAGTCGAGGATCAGCTCGATCCCCCCCTTCGTGCTGTCGATC
66 CCGGCCAGAGAGGCAGAATGAGAAAGCCAAGGATCAGCTCGATCCCCCCCTTCGTGCTGTCGATC
* ** *
29999000 CTGCTGCCACAACCCTCGGTCCGATCTGA
131 CCGCAACCACAACCCTCAGTCCGATCTGA
* * * * *
29999029 TCTTAGA-TTGGGAATGAACTCCGC-ATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGC-T
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTT
* * * * * *
29999091 GAGCCGGCCAGAGAGGCATAATGAGCAAGCCAAGGATCGGC-CTGGT-CCCCCTTTGTGTGCTGT
64 G-GCCGGCCAGAGAGGCAGAATGAGAAAGCCAAGGATCAGCTC-GATCCCCCCCTT-CGTGCTGT
* *
29999154 CGATCCCGCAACCACAACCCTCAGTCCGGT-TGGG
126 CGATCCCGCAACCACAACCCTCAGTCCGATCT-GA
* *
29999188 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCTGGTGCTTGG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTGG
* * *
29999253 TCGGTCGGAGAGGCAGAATG
66 CCGGCCAGAGAGGCAGAATG
29999273 CGTAAGCTGG
Statistics
Matches: 196, Mismatches: 39, Indels: 18
0.77 0.15 0.07
Matches are distributed among these distances:
158 11 0.06
159 182 0.93
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTGG
CCGGCCAGAGAGGCAGAATGAGAAAGCCAAGGATCAGCTCGATCCCCCCCTTCGTGCTGTCGATC
CCGCAACCACAACCCTCAGTCCGATCTGA
Found at i:30003067 original size:159 final size:156
Alignment explanation
Indices: 30002779--30003269 Score: 447
Period size: 159 Copynumber: 3.1 Consensus size: 156
30002769 CTTAGACATA
* * * * * *
30002779 GAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAACGTACGGGCGCTCAGCCGATCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGCT-GAAGA
* * ** * * *
30002844 GGTAGAATGCGCAAGTCAAGGATCGGCCCAATCCCCCTCTGCGTGTTGTCGATC-CTGCTACCAC
65 GGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCT-TGCGTG-TGTCGATCTCTGCTGCCAC
*
30002908 AACCCTCGGTCCGATTCGATCTTAGACTGG
128 AACCCTCAGTCCG-TTCGATCTTAGACTGG
* * *
30002938 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTAAGCCAGCTGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCC-GCTGAAGA
* * * * *
30003003 GGCATAATACGCAAGCCGGGGATCGGCTCGGTCCCTCATTGCGTGCTGTCGGTCTC-GCTGCCAC
65 GGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTC-TTGCGTG-TGTCGATCTCTGCTGCCAC
* * * ** *
30003067 AACCCTCAGTCTGGCTGGGGCTTACACAT-G
128 AACCCTCAGTC-CGTTCGATCTTAGAC-TGG
* * *
30003097 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTTAA-CCGGCCGGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGC-TAAGCC-GCTGAA
* * * * * * *
30003160 GAGGCAGAATGCACAAGCTGGGGATTGACCCGATCCCTCTTACGTGTCGTAGAT-TCTGCTGCCG
63 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTTGCGTGT-GTCGATCTCTGCTGCCA
*
30003224 CAACCCTCAATCC-TGTCTGATCTTAGACTGG
127 CAACCCTCAGTCCGT-TC-GATCTTAGACTGG
30003255 GAATGAACTCCGTAT
1 GAATGAACTCCGTAT
30003270 ACTTAGACTA
Statistics
Matches: 264, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 50 0.19
159 200 0.76
160 9 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGCTGAAGAG
GCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTTGCGTGTGTCGATCTCTGCTGCCACAAC
CCTCAGTCCGTTCGATCTTAGACTGG
Found at i:30003286 original size:26 final size:26
Alignment explanation
Indices: 30003245--30003295 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30003235 CCTGTCTGAT
30003245 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
30003271 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
30003296 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:30003852 original size:317 final size:317
Alignment explanation
Indices: 30003271--30003855 Score: 861
Period size: 317 Copynumber: 1.8 Consensus size: 317
30003261 ACTCCGTATA
* *
30003271 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAGCCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
* * * **
30003336 CGGTCGTAGAGGCCGATCAAAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGGTCCCTCTCTGT
66 CGGCCGTAGAGGCCGATCAAAGAGGCATAATACGTAAGCCGGGGATCAGCTCGGTCCCCCTCTAC
* * * *
30003401 GTGCTGCTGATCCCGCTGTCGGTCCTACCCCCATAACCCTCGGTCCGGCTGGGGCTTAGACATGG
131 GTGCTGCTGATCCCACTGCCAGTCCTACCCCCATAACCCTCGATCCGGCTGGGGCTTAGACATGG
* * *
30003466 AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAACCGGAGAG
196 AATGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAATCAACCGGAAAG
30003531 GCAGAATGCGTAAGTCGGGGATCGACCCGTCCCCCCTGCGTGCTATCGATCTTGCTG
261 GCAGAATGCGTAAGTCGGGGATCGACCCGTCCCCCCTGCGTGCTATCGATCTTGCTG
* ** *
30003588 CTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATTGTGCGTGCGGGTGCTCAG
1 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
30003652 TCGGCCGTAGAGGCCGATCAGAA-AGGCATAATACGTAAGTCGGGGATTAGCTCGGTCCCCCTCT
65 TCGGCCGTAGAGGCCGATCA-AAGAGGCATAATACGTAAGCCGGGGATCAGCTCGGTCCCCCTCT
* ** * *
30003716 ACGTGCTG-TCGATCCCACTGCCAGTCCTGCTGCCATAACCCTTGATCCGGTTGGGGCTTAGACA
129 ACGTGCTGCT-GATCCCACTGCCAGTCCTACCCCCATAACCCTCGATCCGGCTGGGGCTTAGACA
* * * *
30003780 TGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCGCTCAATCGACTGGA
193 TGGAATGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAATCAACCGGA
30003845 AAGGCAGAATG
258 AAGGCAGAATG
30003856 AGCAAGCCAC
Statistics
Matches: 236, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
316 4 0.02
317 230 0.97
318 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.21
Consensus pattern (317 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
CGGCCGTAGAGGCCGATCAAAGAGGCATAATACGTAAGCCGGGGATCAGCTCGGTCCCCCTCTAC
GTGCTGCTGATCCCACTGCCAGTCCTACCCCCATAACCCTCGATCCGGCTGGGGCTTAGACATGG
AATGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAATCAACCGGAAAG
GCAGAATGCGTAAGTCGGGGATCGACCCGTCCCCCCTGCGTGCTATCGATCTTGCTG
Found at i:30003970 original size:26 final size:26
Alignment explanation
Indices: 30003941--30003993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30003931 CTGGTCCGAT
*
30003941 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
30003967 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
30003993 C
1 C
30003994 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:30004690 original size:26 final size:26
Alignment explanation
Indices: 30004661--30004713 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30004651 CCGGTCTGAT
*
30004661 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
30004687 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30004713 C
1 C
30004714 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30006220 original size:153 final size:153
Alignment explanation
Indices: 30005844--30006225 Score: 371
Period size: 153 Copynumber: 2.5 Consensus size: 153
30005834 GACCGATCCG
* * * * *
30005844 GTCCCC-CTGCATCCTGTCGATCTTGCTATCACAATCCTCGGTCTGGTCTGATCTTAGACTGGGA
1 GTCCCCTCTGCATGCTGTCGATCCTGCTGTCACAACCCTCGATCTGGTCTGATCTTAGACTGGGA
* * *
30005908 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGTGCTAAGCCAGCCGAAGAGGC
66 ATGAACTCCCTATGCC--A--CAACCCATGAAACGAGCGTGAGGCGCTAAGCCAGCCGAAGAGGC
* * *
30005973 ATAATGCGCAAGCCGGGGATCGACCTG
127 AGAATGCGCAAGCCAGGGATCGACCTA
* * * * **
30006000 GTCCCCCTCTACATGCTGT-TAGTCCCGCTGCCACAACCCTCGATCTGG-CTAGGGCTTAGACAT
1 GT-CCCCTCTGCATGCTGTCGA-TCCTGCTGTCACAACCCTCGATCTGGTCT-GATCTTAGAC-T
* * * * *
30006063 -GGAATGAACTCCCTATGCC-CAACCCATTAAACGGGCGTGCAGGCGCTCAGCCAGTCGTAGAGG
62 GGGAATGAACTCCCTATGCCACAACCCATGAAACGAGCGTG-AGGCGCTAAGCCAGCCGAAGAGG
* * *
30006126 CAGAATGTGCAAGCCAGGGAT-TAGCTCA
126 CAGAATGCGCAAGCCAGGGATCGACCT-A
* ** *
30006154 GTCCCCTCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCTGGTCTGATCTCAGACTGGGA
1 GTCCCCTCTGCATGCTGTCGATCCTGCTGTCACAACCCTCGATCTGGTCTGATCTTAGACTGGGA
30006219 ATGAACT
66 ATGAACT
30006226 TCATATGCTT
Statistics
Matches: 181, Mismatches: 35, Indels: 23
0.76 0.15 0.10
Matches are distributed among these distances:
152 1 0.01
153 74 0.41
154 41 0.23
156 2 0.01
157 7 0.04
158 55 0.30
159 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.23
Consensus pattern (153 bp):
GTCCCCTCTGCATGCTGTCGATCCTGCTGTCACAACCCTCGATCTGGTCTGATCTTAGACTGGGA
ATGAACTCCCTATGCCACAACCCATGAAACGAGCGTGAGGCGCTAAGCCAGCCGAAGAGGCAGAA
TGCGCAAGCCAGGGATCGACCTA
Found at i:30007690 original size:26 final size:26
Alignment explanation
Indices: 30007639--30007691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30007629 CCAGTTCGAT
*
30007639 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30007665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30007691 C
1 C
30007692 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30008387 original size:26 final size:26
Alignment explanation
Indices: 30008346--30008398 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30008336 TCGATCCGAT
*
30008346 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30008372 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
30008398 C
1 C
30008399 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30008560 original size:184 final size:182
Alignment explanation
Indices: 30008189--30008740 Score: 628
Period size: 184 Copynumber: 3.0 Consensus size: 182
30008179 TCCGGCTGGG
* ** *
30008189 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCT-CTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGG-TGCTCA
* * * * * *
30008253 GCTGACCGGAGAGGCAGAATGCGTAA-TTCAGGGATCGGCCCGATCCCCTACGTGCTGCCGATCC
65 GCCGATCGAAGAGGCAGAATGCGTAAGTT-GGGGATCGGCCCGGTCCCCTACGTGCTGTCGATCC
* * *
30008317 TGCTGCCGGAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
129 TGCTTCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
30008371 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACACACGAAACAAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCA
* *
30008435 GCCGATCGAAGAGGCAGATTGCGTAAGTTGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATC
65 GCCGATCGAAGAGGCAGAATGCGTAAGTTGGGGATCGGCCCGGT--CCCCTACGTGCTGTCGATC
* * * *
30008500 CTGCTTTCGCAACCCTCGATTTGATCTGATCTTAGATTGGGAATGAACTCCGTAT
128 CTGCTTCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** * * *
30008555 GCTTAGACATGGAATGAACTCTGTATGCCTAAGGAAACCCACGAAACGAA-CGTACCGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AAGCGTGCGGGTGCTCA
* * * * * * *
30008619 ACCGATC-AGAGAGACAGAATGCGCAAGCTGGGGACCGACCCGGTGGCCCCTACGTACTGTCGAT
65 GCCGATCGA-AGAGGCAGAATGCGTAAGTTGGGGATCGGCCCGGT--CCCCTACGTGCTGTCGAT
* * * * *
30008683 CCTACTGCTGCAACCCTCGCTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
127 CCTGCTTCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
30008739 GC
1 GC
30008741 CTAAGTCAAC
Statistics
Matches: 312, Mismatches: 50, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
181 2 0.01
182 87 0.28
183 3 0.01
184 217 0.70
185 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
CCGATCGAAGAGGCAGAATGCGTAAGTTGGGGATCGGCCCGGTCCCCTACGTGCTGTCGATCCTG
CTTCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:30009066 original size:26 final size:26
Alignment explanation
Indices: 30009030--30009082 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30009020 CTGGTCTGAT
*
30009030 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
30009056 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30009082 C
1 C
30009083 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30010657 original size:26 final size:26
Alignment explanation
Indices: 30010606--30010658 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30010596 GGCTCAAACT
*
30010606 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
30010632 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTCCATATG
30010658 C
1 C
30010659 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30012282 original size:26 final size:26
Alignment explanation
Indices: 30012246--30012322 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
30012236 CCGATCCGAT
* *
30012246 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
30012272 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
30012298 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGGATGAACTCCGTAT
30012323 AACTAAGTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:30012529 original size:159 final size:158
Alignment explanation
Indices: 30012297--30013054 Score: 634
Period size: 159 Copynumber: 4.8 Consensus size: 158
30012287 AACTCCGTAT
* ** * * *
30012297 GCTTAGAC-TGGGGATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* *
30012361 GCCGACCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCTCTACGTGCTACCGAT
65 GCCGACCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCAGTCCCCC-CTACGTGCTACCGAT
* *
30012426 CCCGCTGCCACAACCCTCGATCCGACTAGG
129 CCCGCTACCACAACCCTCGATCCGACTGGG
* *
30012456 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCAGGCGCTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGC-TCA
* * * * * * * * **
30012521 -CCGGCCGGAGAGGTAGAATACGTAAGCCAGGGATCGGTCCGGTCCCCCCTACGTGATGTCGATC
65 GCCGACCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTACCGATC
* * *
30012585 CAGCTACCGCAACCCTCGATCCGATCT-GA
130 CCGCTACCACAACCCTCGATCCGA-CTGGG
* * * * * * *
30012614 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* *** * * * * *
30012678 GCTGGTTGAAGAGGCATAATAAGCAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTACCGGT
65 GCCGACCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCAGTCCCCC-CTACGTGCTACCGAT
*
30012743 CCCGCTGCCACAACCCTCGATCCTG-CTGGG
129 CCCGCTACCACAACCCTCGATCC-GACTGGG
* * * * * * *
30012773 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAAGTGCTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * ** * * * * **
30012838 CCGATCGGAGAGG-TTGAATGTGCAAGTCGAGGATCGGCCC-GATCCCCCATACGTGTTGTCGAT
66 CCGACCGGAGAGGCAT-AATACGCAAGCCGGGGATCGGCCCAG-TCCCCCCTACGTGCTACCGAT
* * * *
30012901 CCTGCTACCATAACCCTCGATCTGGCTGGG
129 CCCGCTACCACAACCCTCGATCCGACTGGG
** * * * * * *
30012931 GCTTAGACATGGAATGAACTCCCCATGCCCTAAGTCAAACCCA-TAAACGGGCATGTAGGGTGCT
1 GCTTAGACATGGAATGAACTCCGTATG-CCTAAG-CCAACCCACGAAACGAGCGTGCA-GGCGCT
* * * * * * *
30012995 CAGTC-AGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCCTACATGCT
63 CAGCCGA-CCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCT
30013055 GCTGATTCTA
Statistics
Matches: 477, Mismatches: 104, Indels: 35
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 184 0.39
159 229 0.48
160 59 0.12
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTACCGATCC
CGCTACCACAACCCTCGATCCGACTGGG
Found at i:30012874 original size:317 final size:317
Alignment explanation
Indices: 30012298--30012922 Score: 833
Period size: 317 Copynumber: 2.0 Consensus size: 317
30012288 ACTCCGTATG
* * *
30012298 CTTAGACTGGGGATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAGC
* ** * *
30012363 CGACCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCTCTACGTGCTACCGATCC
66 CGACCGAAGAGGCATAATAAGCAAGCCGGGGATCGGCCCAATCCCCCTCTACGTGCTACCGATCC
*
30012428 CGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
30012493 CCAACGAAATGAGCGTGCAGGCGCTTCACCGGCCGGAGAGGTAGAATACGTAAGCCAGGGATCGG
196 CCAACGAAACGAGCATGCAAGCGCTCCACCGACCGGAGAGGTAGAATACGCAAGCCAGGGATCGG
* * * *
30012558 TCCGGTCCCCCCTACGTGATGTCGATCCAGCTACCGCAACCCTCGATCCGATCTGAT
261 CCCGATCCCCCATACGTGATGTCGATCCAGCTACCACAACCCTCGATCCGATCTGAT
* *
30012615 CTTAGACTGGGAATGAACTCCGTAT-GCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTAAG
1 CTTAGACTGGGAATGAACTCCGTATAAC-TAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAG
* *** * *
30012679 CTGGTTGAAGAGGCATAATAAGCAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTACCGGTC
65 CCGACCGAAGAGGCATAATAAGCAAGCCGGGGATCGGCCCAATCCCCCTCTACGTGCTACCGATC
*
30012744 CCGCTGCCACAACCCTCGATCCTG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
130 CCGCTGCCACAACCCTCGATCC-GACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * * ** *
30012808 AACCCATGAAACGGGCATGCAAGTGCTCCGCCGATCGGAGAGGTTGAATGTGCAAGTC-GAGGAT
194 AACCAACGAAACGAGCATGCAAGCGCTCCACCGACCGGAGAGGTAGAATACGCAAGCCAG-GGAT
* * *
30012872 CGGCCCGATCCCCCATACGTGTTGTCGATCCTGCTACCATAACCCTCGATC
258 CGGCCCGATCCCCCATACGTGATGTCGATCCAGCTACCACAACCCTCGATC
30012923 TGGCTGGGGC
Statistics
Matches: 264, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
316 2 0.01
317 261 0.99
318 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAGC
CGACCGAAGAGGCATAATAAGCAAGCCGGGGATCGGCCCAATCCCCCTCTACGTGCTACCGATCC
CGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCAACGAAACGAGCATGCAAGCGCTCCACCGACCGGAGAGGTAGAATACGCAAGCCAGGGATCGG
CCCGATCCCCCATACGTGATGTCGATCCAGCTACCACAACCCTCGATCCGATCTGAT
Found at i:30013496 original size:26 final size:26
Alignment explanation
Indices: 30013458--30013507 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
30013448 CTGGTCTGAT
30013458 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
30013484 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
30013508 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:30013658 original size:352 final size:343
Alignment explanation
Indices: 30012773--30013768 Score: 955
Period size: 366 Copynumber: 2.8 Consensus size: 343
30012763 TCCTGCTGGG
* * * * *
30012773 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAAGTGCTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
** * * * *
30012838 CCGATCGGAGAGGTTGAATGTGCAAGTCGAGGATCGGCCCGATCCCCCATACGTGTTGTCGATCC
66 CCGATCGGAGAGGCAGAATGTGCAAGTCGAGGATCAGCCCGATCCCCC-TGCGTGCTATCGATCC
** * * * ** *
30012903 TGCTACCATAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCCATGCCCTAAGTCA
130 TGCTGTCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATG-CCTAAG-CC
* * * * * * *
30012968 AACCCA-TAAACGGGCATGTAGGGTGCTCAGTCAGCCGGAGAGGTAGAATGCGCAAGCCAGGGAT
193 AACCCACGAAACGAGCGTG-CGGGTGCTCAGTCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGAT
* * * * *
30013032 CAGCCCAGT-CCCC-CCTACATGCTGCTGATTCTACTGCCGCAACCCTTGGTCCAGTCCGATCTT
257 CAGCCCGGTCCCCCTCCTACATCCTGCCGATTCTACTACCGCAACCCTTAGTCCAGTCCGATCTT
*
30013095 AGACTGGGAATGAACTCCATAT
322 AGACTGGGAATGAACTCCATAA
* * * * ** *
30013117 GATTAGA-TTGGAGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCA
* * * ** * * *
30013181 ACCGGTCGGAGAGGCATAATGCACAAATCGAGGATTAGCCC-AGTCCCCCTCTGCGTACTATCGA
65 GCCGATCGGAGAGGCAGAATGTGCAAGTCGAGGATCAGCCCGA-T-CCCC-CTGCGTGCTATCGA
* *
30013245 TCTTGCTACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTC
127 TC---CT----G--CTG-T--CACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCC
* *
30013310 ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCGGAGAGCCAAAATGCG
180 ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCAGCCGGAGAGGCAAAATGCG
* * *
30013375 CAAGCCGGGGATC-GACCCGGTCCCCCTGCGTGCTGCCAATCCTGCCGCTGGTCTTGCTACCGCA
245 CAAGCCGGGGATCAG-CCCGGTCCCCCT-C---CT-AC-ATCCTGCCGAT--TC-TACTACCGCA
** * *
30013439 ACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAA
300 ACCCTTAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAA
* *
30013483 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
* * *
30013548 CCGACCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCCGATCCCCCTGCGTGCTATCGATCCT
66 CCGATCGGAGAGGCAGAATGTGCAAGTCGAGGATCAGCCCGATCCCCCTGCGTGCTATCGATCCT
* * ** * *
30013613 GCTGTCACAACCCTCGGTCCGGTTCGATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAA
131 GCTGTCACAACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
* * * * * *
30013677 CCCACGAAATGAGCGTGCGGGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAG
195 CCCACGAAACGAGCGTGCGGGTGCTCAGTCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAG
* * *
30013742 CCCGATCCCCCT-CTGCATGCTGCCGAT
260 CCCGGTCCCCCTCCTACATCCTGCCGAT
30013769 CCCACTGCCA
Statistics
Matches: 521, Mismatches: 98, Indels: 65
0.76 0.14 0.10
Matches are distributed among these distances:
343 5 0.01
344 79 0.15
345 24 0.05
346 2 0.00
347 2 0.00
348 2 0.00
351 1 0.00
352 116 0.22
353 1 0.00
354 4 0.01
355 55 0.11
356 19 0.04
357 43 0.08
358 1 0.00
361 4 0.01
362 1 0.00
363 8 0.02
364 15 0.03
365 6 0.01
366 128 0.25
367 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (343 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
CCGATCGGAGAGGCAGAATGTGCAAGTCGAGGATCAGCCCGATCCCCCTGCGTGCTATCGATCCT
GCTGTCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGTGCTCAGTCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGC
CCGGTCCCCCTCCTACATCCTGCCGATTCTACTACCGCAACCCTTAGTCCAGTCCGATCTTAGAC
TGGGAATGAACTCCATAA
Found at i:30013850 original size:159 final size:157
Alignment explanation
Indices: 30013482--30013927 Score: 538
Period size: 159 Copynumber: 2.8 Consensus size: 157
30013472 GAACTCCGTA
* * *
30013482 AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCA
1 AGCTTA-AAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTGA
** * * **
30013547 GCCGACCGGAGAGGCAGAATGTGCAAGCCGAAGATCAGCCCGAT-CCCCCTGCGTGCTATCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATC
** * * * *
30013611 CTGCTGTCACAACCCTCGGTCCGGTTCG
130 CCACTGCCACAACCCTCGGTCCAGCTAG
* * * * * *
30013639 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 AGCTTAAAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTGA
* * *
30013704 GCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCC-CTGCGTGCTGCCGAT
30013769 CCCACTGCCACAACCCTCGGTCCAGCTAG
129 CCCACTGCCACAACCCTCGGTCCAGCTAG
* *
30013798 GGCTTAAAAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCG
1 AGCTT-AAAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCT-G
* * ** *
30013863 -GCCGGTCGGAGAGGTAGAATGCGTAAGCCGAGGATTGGCCTTG-TCCCCCCTGCGTGCTGCCGA
64 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCC-CGATCCCCCCTGCGTGCTGCCGA
30013926 TC
128 TC
30013928 TTGCTGCTGT
Statistics
Matches: 243, Mismatches: 40, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
156 1 0.00
157 92 0.38
158 19 0.08
159 126 0.52
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
AGCTTAAAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTGAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCC
CACTGCCACAACCCTCGGTCCAGCTAG
Found at i:30014008 original size:26 final size:26
Alignment explanation
Indices: 30013958--30014010 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30013948 CTAGTTCGAT
**
30013958 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30013984 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30014010 C
1 C
30014011 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30021424 original size:26 final size:26
Alignment explanation
Indices: 30021395--30021447 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30021385 CCGATTCGAT
30021395 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
30021421 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
30021447 C
1 C
30021448 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:30021804 original size:26 final size:26
Alignment explanation
Indices: 30021775--30021827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30021765 CCGATCCGAT
*
30021775 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
30021801 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
30021827 C
1 C
30021828 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30022259 original size:862 final size:873
Alignment explanation
Indices: 30020691--30022322 Score: 2175
Period size: 862 Copynumber: 1.9 Consensus size: 873
30020681 ATCTCGCTAC
*
30020691 CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCAA
1 CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCAA
** * * * * *
30020756 GCCAACCCACGAAACGAGCGTGCGAGCGGTCAGCCGGTCGGAGAGGCAAAATTCGTAAGACGGGG
66 GCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAGCCGAAGAGGCAAAATGCGCAAGACGGGG
* * * * * *
30020821 ATCAACTCGGTCCCCCCTTCGTGCTGCCGATCCGGCTACTGGTCCTACTGCCACAACCCTCAGTC
131 ATCAACCCGATCCCCCCTACATGCTACCGATCCGGCTACTGGTCCTACTACCACAACCCTCAGTC
* * ** *
30020886 CAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGAATGAACTCTGTACGCTTAA
196 CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAATGAACTCCATACGCCTAA
* ** *
30020951 GCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGAAGAGGTGGAATGCGCAAGTTGGGG
261 GCCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCGAAGAGGTCAAATGCGCAAGTCGGGG
* * *
30021016 ATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTTGATCTGGTCTAATCTT
326 ATCAGCCCGATCCCCCCTGCGTACTGTCGATCCTGCTATCGCAACCCTAGATCTGGTCTAATCTT
*
30021081 AGACAGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATGCAGGCACTGAGTTGG
391 AGACAGGGAATGAACTCCGTATGCATAAGTCAACCCAC--AACGAGAATGCAGG-AC-GAG-TGG
* * *
30021146 CCAAAGAGGCATAATACGTAAGCTAGGGATCGGCTCTATCCCCCTCTGCGTGCTATCGGTCTTGC
451 CCAAAGAGGCATAATACGCAAGCTAGGGATCGGCTCTATCCCCCTCTACGTGCTACCGGTCTTGC
* **
30021211 TGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCC
516 TGCCACAACCCTCGGTCCGGCTGGGAATTAGACATGGAATGAACTCCCTATGACTAAGCCAACCC
* * *
30021276 ATGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATACGCAAGCCAGGGATCGGCCC
581 ACGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATACGCAAGCCAGGGATCAGCCC
* * *
30021341 GATCCCCCCTACGTGCTACCGATCCTACTACTGCAATCCTCGGTCCGATTCGATCTTAGACTGGG
646 GATCCCCCCTACGTGCTACCGATCATACTACTGCAACCCTCGGTCCGATCCGATCTTAGACTGGG
* *
30021406 AATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTATGTCAACCCATGAAACAAGC
711 AATGAACT-CATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGC
30021471 GTACGGGCACTCAGCCGGCTGGAGAGGCCGACCGGAGAGGCATAATGCGCAACTCAAGGATCAGC
775 GTACGGGCACTCAGCCGGCTGGAGAGGCCGACCGGAGAGGCATAATGCGCAACTCAAGGATCAGC
30021536 TCGATCCCCCTCTGCGTGCTACCGATCCTGCTGT
840 TCGATCCCCCTCTGCGTGCTACCGATCCTGCTGT
* * * *
30021570 CGGTCCTGCTGCCATAACCCTCGGTCCGATTGGAGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCC-A
* * * * *
30021635 AGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGGG
65 AGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAGCCGAAGAGGCAAAATGCGCAAGACGGG
* ** * * * **
30021700 GATCGACCCGATCCCCCCTACATGCTATTGATCCTGCTGCTGGTCCTCCTACCACAACCCTTGGT
130 GATCAACCCGATCCCCCCTACATGCTACCGATCCGGCTACTGGTCCTACTACCACAACCCTCAGT
*
30021765 CC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCC
195 CCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GAATGAACTCCATACGCC
* *
30021829 TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGG-CAAATGCGCAAGTCG
258 TAAGCCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCGAAGAGGTCAAATGCGCAAGTCG
** * * *
30021893 GGGATTGGCCCGATCCCCCCTGCGTACTGTCGATCCTGCTGTCGTAACCCTCAG-TCTGGTC-GA
323 GGGATCAGCCCGATCCCCCCTGCGTACTGTCGATCCTGCTATCGCAACCCT-AGATCTGGTCTAA
* * * *
30021956 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC-A-CC-C-ATGA-AATG-A-G-C-A-T-G-
387 TCTTAGACAGGGAATGAACTCCGTATGCATAAGTCAACCCACAACGAGAATGCAGGACGAGTGGC
* * * *
30022009 CGAAGAGGCATAATGCGCAAG-TCGGGGATCGGC-CTGGTCCCCCTCTACGTGCTACCGGTCTTG
452 CAAAGAGGCATAATACGCAAGCT-AGGGATCGGCTCT-ATCCCCCTCTACGTGCTACCGGTCTTG
* * *
30022072 TTGCCACAACCCTCGGTCCGGTTGGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
515 CTGCCACAACCCTCGGTCCGGCTGGGAATTAGACATGGAATGAACTCCCTATGACTAAGCCAACC
* ** * * * * *
30022137 CCCGAAACGGGTGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCT
580 CACGAAACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATACGCAAGCCAGGGATCAGCC
* * * * * * * *
30022202 CGATCCTCCCTGCGTGCTATCGATCATGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGATTGG
645 CGATCCCCCCTACGTGCTACCGATCATACTACTGCAACCCTCGGTCCGATCCGATCTTAGACTGG
* *
30022267 GAATGAACTCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAT
710 GAATGAACTCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCAT
30022323 AAAATGAGCG
Statistics
Matches: 652, Mismatches: 95, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
861 46 0.07
862 227 0.35
863 1 0.00
864 1 0.00
866 1 0.00
868 1 0.00
870 1 0.00
871 1 0.00
872 3 0.00
873 3 0.00
876 1 0.00
877 2 0.00
878 1 0.00
879 92 0.14
880 210 0.32
881 61 0.09
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (873 bp):
CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCAA
GCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAGCCGAAGAGGCAAAATGCGCAAGACGGGG
ATCAACCCGATCCCCCCTACATGCTACCGATCCGGCTACTGGTCCTACTACCACAACCCTCAGTC
CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAATGAACTCCATACGCCTAA
GCCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCGAAGAGGTCAAATGCGCAAGTCGGGG
ATCAGCCCGATCCCCCCTGCGTACTGTCGATCCTGCTATCGCAACCCTAGATCTGGTCTAATCTT
AGACAGGGAATGAACTCCGTATGCATAAGTCAACCCACAACGAGAATGCAGGACGAGTGGCCAAA
GAGGCATAATACGCAAGCTAGGGATCGGCTCTATCCCCCTCTACGTGCTACCGGTCTTGCTGCCA
CAACCCTCGGTCCGGCTGGGAATTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAA
ACGGGCATGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATACGCAAGCCAGGGATCAGCCCGATCC
CCCCTACGTGCTACCGATCATACTACTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGA
ACTCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGG
GCACTCAGCCGGCTGGAGAGGCCGACCGGAGAGGCATAATGCGCAACTCAAGGATCAGCTCGATC
CCCCTCTGCGTGCTACCGATCCTGCTGT
Found at i:30023395 original size:158 final size:155
Alignment explanation
Indices: 30023005--30023446 Score: 412
Period size: 158 Copynumber: 2.8 Consensus size: 155
30022995 AACTCCGTAT
* * * * *
30023005 GCTTAGACATGGAATGAACTCAATATGGCTAAGCAAACCCACGAAACGAGAGTGC-GGCGCCCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
30023069 CCAGCCGCAA-AGGCAGAATGTGCAAGTCAGGGATTGACCTAGTCCCCCTACGTGTTGTCGATCC
65 CCAGACG-AAGAGGCAGAATGCCCAAGTCAGGGATTGACCGAGTCCCCCTACGTGCTGCCGATCC
* *
30023133 TGCTGCCACAACCCTCAGTCTGGTCGA
129 AGCTGCCACAACCCTCAGTCCGGTCGA
* * * * * *
30023160 TCTTAGAC-TGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
30023224 GCC-GACCAGAGAGGCATAATGCCCAAGTCAGGGATTGGCCCGA-TCCCCCTCTGCGTGCTGCCG
64 GCCAGACGA-AGAGGCAGAATGCCCAAGTCAGGGATT-GACCGAGT-CCCC-CTACGTGCTGCCG
* * *
30023287 GTCCAGCTGCCACAACCCTC-GATCCGGTTGGG
125 ATCCAGCTGCCACAACCCTCAG-TCCGG-TCGA
*
30023319 GCTTAGACATGGAATGAACTCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * *
30023384 CAGTCGAAGAGGTAGAATGCATAAGCCGGGGATCGATCCG-GTCCCCCTGCGTGCTGTCGATCC
66 CAGACGAAGAGGCAGAATGCCCAAGTCAGGGATTGA-CCGAGTCCCCCTACGTGCTGCCGATCC
30023447 TACTATCGCA
Statistics
Matches: 228, Mismatches: 45, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
154 2 0.01
155 46 0.20
156 47 0.21
157 14 0.06
158 95 0.42
159 23 0.10
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGACGAAGAGGCAGAATGCCCAAGTCAGGGATTGACCGAGTCCCCCTACGTGCTGCCGATCCAG
CTGCCACAACCCTCAGTCCGGTCGA
Found at i:30023512 original size:26 final size:26
Alignment explanation
Indices: 30023476--30023528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30023466 CATGTTTGAT
30023476 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
30023502 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30023528 C
1 C
30023529 CTAAAGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30023873 original size:24 final size:26
Alignment explanation
Indices: 30023837--30023887 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30023827 CTGGTCTGAT
30023837 CTTAGACTGGAA-TG-ACTCCGTATG
1 CTTAGACTGGAATTGAACTCCGTATG
30023861 CTTAGACAT-GAATTGAACTCCGTATG
1 CTTAGAC-TGGAATTGAACTCCGTATG
30023887 C
1 C
30023888 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 10 0.42
25 3 0.12
26 11 0.46
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAATTGAACTCCGTATG
Found at i:30024686 original size:26 final size:26
Alignment explanation
Indices: 30024657--30024709 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30024647 CCGATCTGAT
*
30024657 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
30024683 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
30024709 C
1 C
30024710 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30025181 original size:157 final size:154
Alignment explanation
Indices: 30024683--30025181 Score: 449
Period size: 157 Copynumber: 3.2 Consensus size: 154
30024673 ACTCCGTATG
** *
30024683 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAG-ATGCGGGCGCTCAGC
* * * *
30024748 CGACTGGAGAGGCAGAATGCGTAAGCCGAAGA-CTGACTCGATCCCCCCTATGTGCTGTCGATCC
65 CGAC-CGAGAGGCAGAATGCGTAAGCCGAGGATC-GGCTCGAT-CCCCCTGTGTGCTGTCGATCC
* * * * *
30024812 TGCTGCTGTAATCCTCGATCCAGTCTGAT
127 TGTTGC-GCAACCCTCGATCCGGTCCGAT
* ** * * *
30024841 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGAGTTTGGGCGTTGAC
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGA-TGCGGGCGCTCAG
* * * * *
30024905 CCGA-CGAGAGGCATAATACGTAAGCCGAGGATCGGCTCGGTCTCTCTCTGTGTGCTGCCGGA-C
64 CCGACCGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATC-C-CCCTGTGTGCTGTC-GATC
** * * ** **
30024968 CCATTACGACAACCCTCGATCCGCTTGGGG
126 CTGTTGCG-CAACCCTCGATCCGGTCCGAT
30024998 CTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAAC-AGGCATGCGGGCGCTCA
1 CTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACGA-G-ATGCGGGCGCTCA
* **
30025061 GCCGACCCGAGAGGCAGAATGCGCAAGCC-AGGGATCGG-TCTGATCCCCCTGCATGCTGTCGAT
63 GCCGA-CCGAGAGGCAGAATGCGTAAGCCGA-GGATCGGCTC-GATCCCCCTGTGTGCTGTCGAT
*
30025124 CTTGTTGTCGCAACCCTCGATCCGGTCCGAT
125 CCTGTTG-CGCAACCCTCGATCCGGTCCGAT
30025155 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
30025182 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 53, Indels: 39
0.75 0.15 0.11
Matches are distributed among these distances:
155 1 0.00
156 37 0.14
157 135 0.50
158 67 0.25
159 29 0.11
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGATGCGGGCGCTCAGCC
GACCGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATCCCCCTGTGTGCTGTCGATCCTGTT
GCGCAACCCTCGATCCGGTCCGAT
Found at i:30025191 original size:26 final size:26
Alignment explanation
Indices: 30025155--30025207 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30025145 CCGGTCCGAT
*
30025155 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30025181 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30025207 C
1 C
30025208 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30025400 original size:171 final size:171
Alignment explanation
Indices: 30025180--30025549 Score: 420
Period size: 171 Copynumber: 2.2 Consensus size: 171
30025170 AACTCTGTAT
* * * *
30025180 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAA
* * * * * * ** **
30025245 CCGGCCGGAGAGGCATAATGCACAAGCTGAGGTTC-AGCTCGATCTGCCTCTGTGTGCTGTCGAT
66 CCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGA-CCCGATCCCCCTCTACGTGCTGTCGAT
* * * *
30025309 CCCGCTACCAGTCCTGCTACTGCAACCTTCGGTCTGGCTGGG
130 CCCGCTACCAGTCCTGCTACCGCAACCCTCGGTCTGGCTCGA
** * *
30025351 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCA
* * * *
30025415 ACCGATCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGAT
65 ACCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGAT
* * * * *
30025480 CCTGCTGCTAGTCCTGCTACCGTAACCCTCGGTCTGGTTCGA
130 CCCGCTACCAGTCCTGCTACCGCAACCCTCGGTCTGGCTCGA
*
30025522 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
30025550 TTAGACATGG
Statistics
Matches: 164, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
170 1 0.01
171 161 0.98
172 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAA
CCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATC
CCGCTACCAGTCCTGCTACCGCAACCCTCGGTCTGGCTCGA
Found at i:30025561 original size:26 final size:26
Alignment explanation
Indices: 30025523--30025575 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30025513 CTGGTTCGAT
30025523 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30025549 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30025575 C
1 C
30025576 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30026337 original size:341 final size:342
Alignment explanation
Indices: 30025794--30026423 Score: 807
Period size: 341 Copynumber: 1.8 Consensus size: 342
30025784 TAATGCGTAA
* * *
30025794 GCCCGATCCCTCTCTGCATGCTGTCGGTCTCACTACCACAACCCTCGGTCTGGCTGGGGCTTAGA
1 GCCCGATCCCTCTCTGCATGCTGCCAGTCTCACTACCACAACCCTCGATCTGGCTGGGGCTTAGA
* * * * *
30025859 CATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAATGGGCGTGCGAGTACTAAGCTGGTCG
66 CATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGAGCACTAAGCCGGTCG
* ** * * *
30025924 GAGAGGTAGAATGCGTAAGCCAAGAATCGGCCCGATCCCCCCTGCATGCTGCCAAACCTTCTGTC
131 GAGAGGCAGAATGCGTAAGCCAAGAATCAACCCGATCCCCCCTGCATGCTACCAAACCTACTCTC
* *
30025989 ACAACCCTTGGTCCGGCCTGATCTTAGACT-GGAATGAACTCCATATGCTTAGACTGGGGATGAA
196 ACAACCCTCGGTCCGGCCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAA
*
30026053 CTTAGTATGCATAAGTCAACCCACGAAACGAGCATACAGGCACTGAGCTGGCTGAAGAGGCATAA
261 CTCAGTATGCATAAGTCAACCCACGAAACGAGCATACAGGCACTGAGCTGGCTGAAGAGGCATAA
30026118 TGTGTAAGCGAGGATCG
326 TGTGTAAGCGAGGATCG
* ** * * *
30026135 GCCCGATCTCC-CTCTGCGTGCTGCCAGTCTTGCTGCCACAACCCTCGATTTGGTTGGGGCTTAG
1 GCCCGATC-CCTCTCTGCATGCTGCCAGTCTCACTACCACAACCCTCGATCTGGCTGGGGCTTAG
* * * *
30026199 ACATGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCGCTCAGCCGGTC
65 ACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGAGCACTAAGCCGGTC
* ** * * * ** * * *
30026264 GGAGAGGCAGAATGCGTAAGTCGGGGATCAACCCGATCCCTCTTGTGTGTTACCGATCCTACTAC
130 GGAGAGGCAGAATGCGTAAGCCAAGAATCAACCCGATCCCCCCTGCATGCTACCAAACCTACT-C
* * * *
30026329 T-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATG
194 TCACAACCCTCGGTCCGGCCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATG
* * * *
30026393 AACTCCGTATGCCTATGTCAACCCATGAAAC
259 AACTCAGTATGCATAAGTCAACCCACGAAAC
30026424 AAGTGGGCGG
Statistics
Matches: 240, Mismatches: 46, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
341 181 0.75
342 59 0.25
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (342 bp):
GCCCGATCCCTCTCTGCATGCTGCCAGTCTCACTACCACAACCCTCGATCTGGCTGGGGCTTAGA
CATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGAGCACTAAGCCGGTCG
GAGAGGCAGAATGCGTAAGCCAAGAATCAACCCGATCCCCCCTGCATGCTACCAAACCTACTCTC
ACAACCCTCGGTCCGGCCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAA
CTCAGTATGCATAAGTCAACCCACGAAACGAGCATACAGGCACTGAGCTGGCTGAAGAGGCATAA
TGTGTAAGCGAGGATCG
Found at i:30026384 original size:855 final size:853
Alignment explanation
Indices: 30024654--30026455 Score: 1854
Period size: 855 Copynumber: 2.1 Consensus size: 853
30024644 GGTCCGATCT
30024654 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
* *
30024719 CCCACGAAACGAGTATGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGTAAGCCGAAGACTGA
66 CCCACGAAACAAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGTAAGCCGAAGACTGA
* * * ** * * *
30024784 CTCGATCCCCCCTATGTGCTGTCGATCCTGCTGCTGTAATCCTCGATCCAGTCTGATCTTAGACT
131 CTCGATCCCCCCTACGTACTATCGATCCTGCTGCTACAACCCTAGATCCAGTCTGATCTAAGACT
* * * *
30024849 GGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGAGTTTGGGCGTTGACCCGACGAGA
196 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTTCGGGCGCTGACCCGACGAAA
* ** * *
30024914 GGCATAATACGTAAGCCGAGGATCGGCTCGGTCTCTCTCTGTGTGCTGCCGGACCCATTACGACA
261 GGCATAATACGTAAGCC---G--CGGATC-G-CTCTCTCTGCATGCTGCCGGACCCACTACCACA
* *
30024979 ACCCTCGATCCGCTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAAC
319 ACCCTCGATCCGCTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * * * * *
30025044 AGGCATGCGGGCGCTCAGCCGACCCGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCTGATCCCC
384 AGGCATGCGAGCACTAAGCCGACCCGAGAGGCAGAATGCGCAAGCCAAGAATCGGCCCGATCCCC
* * * * *
30025109 CTGCATGCTGTCGATCTTGTTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT
449 CTGCATGCTGCCAACCTTGCTGTCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT
** * * * **
30025174 CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGC
514 CCATATGCTTAGACTGGGGATGAACTCAGTATGCATAAGTCAACCCACAAAACGAGCATACAGGC
* * * *
30025239 GCTCAGCCGGCCGGAGAGGCATAATGCACAAGCTGAGGTTCAGCTCGATCTGCCTCTGTGTGCTG
579 ACTCAGCCGGCCGAAGAGGCATAATGCACAAGCTGAGGATCAGCCCGATCTGCCTC---GTGCTG
** * * *
30025304 TCGATCCCGCTACCAGTCCTGCTACTGCAACCTTCGGTCTGGCTGGGGCTTAGACATGGAATGAA
641 TCGAT--CGCTACCAGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGAAATGAA
* * * *
30025369 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGATCAGAGAGGTAGAA
704 CTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGATCAGAGAGGCAGAA
* ** * * *
30025434 TGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCTGCTGCTAGTCCTGCTA
769 TGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTACCGATCCTACTGCAACTCCTGCTA
** * *
30025499 CCGTAACCCTCGGTCTGGTTC
834 CCGTAA-CCTCGGAATGCTCC
* *
30025520 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
* * * * * *
30025585 CCCATGAAACAAGCGTGCGGGTGCTCAGCCG-GTCGGAGAGGTAGAATGCGTAAGCC-AGGGAC-
66 CCCACGAAACAAGCATGCGGGCGCTCAGCCGACT-GGAGAGGCAGAATGCGTAAGCCGA-AGACT
* * * * * * * **
30025647 GGCTCGGTGCCCTCTGCGTACTATCGATCCTGCTGCTACAACCCTTAG-TTCGGTCTTTTCTAAG
129 GACTCGATCCCCCCTACGTACTATCGATCCTGCTGCTACAACCC-TAGATCCAGTCTGATCTAAG
* * * ** *
30025711 ACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGTGCTGAGCTGGCC
193 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTTCGGGCGCTGA-CCCGAC
* * * *
30025775 GAAAAGGCATAATGCGTAAGCC-C-GATC-C-CTCTCTGCATGCTGTCGGTCTCACTACCACAAC
257 G-AAAGGCATAATACGTAAGCCGCGGATCGCTCTCTCTGCATGCTGCCGGACCCACTACCACAAC
* * * **
30025836 CCTCGGTCTGGC-TGGGGCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAATG
321 CCTCGATC-CGCTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA
* * * ** * * *
30025900 GGCGTGCGAGTACTAAGCTGGTCGGAGAGGTAGAATGCGTAAGCCAAGAATCGGCCCGATCCCCC
385 GGCATGCGAGCACTAAGCCGACCCGAGAGGCAGAATGCGCAAGCCAAGAATCGGCCCGAT-CCCC
* *
30025965 CTGCATGCTGCCAAACCTT-CTGTCACAACCCTTGGTCCGG-CCTGATCTTAGACT-GGAATGAA
449 CTGCATGCTGCC-AACCTTGCTGTCACAACCCTCGATCCGGTCC-GATCTTAGACTGGGAATGAA
* *
30026027 CTCCATATGCTTAGACTGGGGATGAACTTAGTATGCATAAGTCAACCCACGAAACGAGCATACAG
512 CTCCATATGCTTAGACTGGGGATGAACTCAGTATGCATAAGTCAACCCACAAAACGAGCATACAG
* * * *** *
30026092 GCACTGAGCTGGCTGAAGAGGCATAATGTGTAAGC-GAGGATCGGCCCGATCT-CC-C-T-CTG-
577 GCACTCAGCCGGCCGAAGAGGCATAATGCACAAGCTGAGGATCAGCCCGATCTGCCTCGTGCTGT
* * * * *
30026151 CG-T-GCTGCCAGTCTTGCTGCCACAACCCTCGATTTGGTTGGGGCTTAGACATGAAATGAACTC
642 CGATCGCTACCAGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGAAATGAACTC
* * * * *
30026214 CCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGC
707 CCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGATCAGAGAGGCAGAATGC
* * * ** *
30026279 GTAAGTCGGGGATCAACCCGATCCCTCT-TGTGTGTTACCGATCCTACT---A---CTGC-A---
772 GCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTACCGATCCTACTGCAACTCCTGCTACCG
* ** * *
30026333 -ACCCTCGGTCTGGTCT
837 TAACCTCGGAATGCTCC
* * *
30026349 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAGATGAACTCCGTATGCCTATGTCA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA-ATGAACTCCATATGCCTAAGCCA
* *** * * *
30026413 ACCCATGAAACAAGTGGGCGGGCACTCAGCCGGCCGGAGAGGC
65 ACCCACGAAACAAGCATGCGGGCGCTCAGCCGACTGGAGAGGC
30026456 CGACCGGAGA
Statistics
Matches: 789, Mismatches: 136, Indels: 59
0.80 0.14 0.06
Matches are distributed among these distances:
828 4 0.01
829 104 0.13
830 1 0.00
834 1 0.00
835 4 0.01
838 1 0.00
841 14 0.02
842 130 0.16
845 1 0.00
846 2 0.00
847 3 0.00
848 1 0.00
852 1 0.00
853 2 0.00
854 14 0.02
855 218 0.28
856 46 0.06
857 4 0.01
859 3 0.00
860 1 0.00
864 48 0.06
865 53 0.07
866 133 0.17
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (853 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACAAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGTAAGCCGAAGACTGA
CTCGATCCCCCCTACGTACTATCGATCCTGCTGCTACAACCCTAGATCCAGTCTGATCTAAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTTCGGGCGCTGACCCGACGAAA
GGCATAATACGTAAGCCGCGGATCGCTCTCTCTGCATGCTGCCGGACCCACTACCACAACCCTCG
ATCCGCTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATG
CGAGCACTAAGCCGACCCGAGAGGCAGAATGCGCAAGCCAAGAATCGGCCCGATCCCCCTGCATG
CTGCCAACCTTGCTGTCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
CTTAGACTGGGGATGAACTCAGTATGCATAAGTCAACCCACAAAACGAGCATACAGGCACTCAGC
CGGCCGAAGAGGCATAATGCACAAGCTGAGGATCAGCCCGATCTGCCTCGTGCTGTCGATCGCTA
CCAGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGAAATGAACTCCCTATGCCT
AAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGATCAGAGAGGCAGAATGCGCAAGCCGG
GGATCAACCCGATCCCCCTCTACGTGCTACCGATCCTACTGCAACTCCTGCTACCGTAACCTCGG
AATGCTCC
Found at i:30026393 original size:26 final size:26
Alignment explanation
Indices: 30026352--30026404 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30026342 CTGGTCTGAT
30026352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30026378 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
30026404 C
1 C
30026405 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30026597 original size:26 final size:26
Alignment explanation
Indices: 30026561--30026613 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
30026551 CTGATCCAAT
30026561 CTCAGACATGGAATGAACTCCGTATG
1 CTCAGACATGGAATGAACTCCGTATG
30026587 CTCAGACATGGAATGAACTCCGTATG
1 CTCAGACATGGAATGAACTCCGTATG
30026613 C
1 C
30026614 CTAAGCCCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (26 bp):
CTCAGACATGGAATGAACTCCGTATG
Found at i:30027090 original size:26 final size:26
Alignment explanation
Indices: 30027061--30027113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30027051 CCGGTCCGAT
*
30027061 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30027087 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30027113 C
1 C
30027114 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30027454 original size:170 final size:171
Alignment explanation
Indices: 30027086--30027454 Score: 383
Period size: 171 Copynumber: 2.2 Consensus size: 171
30027076 AACTCGGTAT
* *
30027086 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGGGTGCAGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGGGTGCAGGCGCTCAA
* * * * * * * *
30027151 CTGGCCGGAGAGGCATAATGCACAAGTCGAAGATCAGCCCGATCTGCCTCTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAAGATCAGCCCGATCTCCCCCTACATGCTATCGATC
* * * * * *
30027216 CCGCTGTCGGTCCTGCTGCTACAACCTTCGGTCTGGCTGGG
131 CCGCTGTCAGTCCTGCTGCCACAACCCTCGATCTGGCTCGA
** * * *
30027257 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CTAACCCATGAAACGAGTGTGCGGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-AACCCACAAAACGAGGGTGCAGGCGCTC
* * * *
30027320 AACCGATCGGAGAGGTAGAATGCGCAAGCC-AGGGATC-GACCCGATC-CCCCCTACATGCTATC
64 AACCGACCGGAGAGGCAGAATGCACAAGCCGA-AGATCAG-CCCGATCTCCCCCTACATGCTATC
* *
30027382 GATCCTGCTG-CTAGTCCTGCTGCCGCAACCCTCGATCTGG-TCCGA
127 GATCCCGCTGTC-AGTCCTGCTGCCACAACCCTCGATCTGGCT-CGA
*
30027427 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
30027455 TTAGATATGA
Statistics
Matches: 163, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
169 3 0.02
170 73 0.45
171 86 0.53
172 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGGGTGCAGGCGCTCAA
CCGACCGGAGAGGCAGAATGCACAAGCCGAAGATCAGCCCGATCTCCCCCTACATGCTATCGATC
CCGCTGTCAGTCCTGCTGCCACAACCCTCGATCTGGCTCGA
Found at i:30027750 original size:867 final size:866
Alignment explanation
Indices: 30026455--30028031 Score: 2386
Period size: 867 Copynumber: 1.8 Consensus size: 866
30026445 GCCGGAGAGG
* * * * * * *
30026455 CCGACCGGAGAGGTATAATACGCAAGCCAGGGATTAGCCCGGTCCCCCTTACGTGTTGTCGATCC
1 CCGACCGGAGAGGTAGAATACGCAAGCCAGGGATGAGCCCGATCCCCCCTACATGCTATCGATCC
* *
30026520 TGCTGTTGGTCCTGCTGCAACAACCCTCGATCTGATCCAATCTCAGACATGGAATGAACTCCGTA
66 TGCTGCTAGTCCTGCTGCAACAACCCTCGATCTGATCCAATCTCAGACATGGAATGAACTCCGTA
* * * *
30026585 TGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCCACCCATGAAATGAGCGTACGGGTGCTCA
131 TGCTCAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * * *
30026650 GCAGGCCAGAGAGGTAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATC
196 ACAGACCAGAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTATCGATC
* *
30026715 TTGCTACCGCAACCCTCAGTCTGATCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
261 TTGCTACCGCAACCCTCAGTCTGATCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
** * * *
30026780 CCCACAAAATGAGCATGCGGGTGCTGAGCCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCGA
326 CCCACAAAATGAGCATGCGGGTGCTGAGCCGACCAGAGAAGCATAATGCGCAAGCCAGGGATCGA
* * *
30026845 CCCGTTCCCCCTTTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCGAT-TCGACTGGGAATTAGA
391 CCCGATCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCT-GACTGGGAATTAGA
* *
30026909 CATGGAATAAACTCCCTATGCCTAAGCCAACCCCCGAAACGGGTGTGCGGGCACTTAGCCGGTCA
455 CATGGAATAAACTCCCTATGCCTAAGCCAACCCCCGAAACGGGCGTGCGGGCACTCAGCCGGTCA
* *
30026974 GAAAGGCAGAATACGCAAGCCAGGGATCGGTCCGATCCCCCCTGCATGCTATCGATCCTGCTGCC
520 GAAAGGCAGAATACGCAAGCCAGGGATCGG-CCGATCCACCCTGCATGCTATCGATCCTGCTACC
*
30027039 GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGGATGAA
584 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGGATGAA
* * * *
30027104 CTCCGTATGCCTAAGTCAACCCACAAAACGAGGGTGCAGGCGCTCAGCTGGCCGGAGAGGCATAA
649 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCATAA
30027169 TGCACAAGTCGAAGATCAGCCCGATCTGCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTG
714 TGCACAAGTCGAAGATCAGCCCGATCTGCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTG
30027234 CTACAACCTTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCAT
779 CTACAACCTTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCAT
30027299 GAAACGAGTGTGCGGGTGCTCAA
844 GAAACGAGTGTGCGGGTGCTCAA
* *
30027322 CCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCCCTACATGCTATCGATC
1 CCGACCGGAGAGGTAGAATACGCAAGCCAGGGAT-GAGCCCGATCCCCCCTACATGCTATCGATC
** * * *
30027386 CTGCTGCTAGTCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGAC-TGGGAATGAACTCCG
65 CTGCTGCTAGTCCTGCTGCAACAACCCTCGATCTGATCCAATCTCAGACAT-GGAATGAACTCCG
* *
30027450 TATGCTTAGATATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCT
129 TATGCTCAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCT
* * * * **
30027515 CAACCGACCAGAGAGGCAGAATGCGTAAGTCGAGGATTGGCCTGATCCCCTTTGCGTGCTATCGA
194 CAACAGACCAGAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTATCGA
* * *
30027580 TCTTGCTGCCGCAACCCTCAGTCTGGTCGATCTTATACTGGGAATGAACTCCATATGCCTAAGTC
259 TCTTGCTACCGCAACCCTCAGTCTGATCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
* * *
30027645 AACCCACAAAATTAGCATGCGGGTGCTGAGCCGACCAGAGAAGCATAATGCGCAAGCCGGGGATT
324 AACCCACAAAATGAGCATGCGGGTGCTGAGCCGACCAGAGAAGCATAATGCGCAAGCCAGGGATC
* *
30027710 GGCCCGATCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGTGAATTAG
389 GACCCGATCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGAATTAG
* * * *
30027775 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAAGGGGCGTGCGGGCGCTCAGTCGGTC
454 ACATGGAATAAACTCCCTATGCCTAAGCCAACCCCCGAAACGGGCGTGCGGGCACTCAGCCGGTC
* * * * * * * *
30027840 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCACCCTGCGTGCTGTCGATCCTGCTACT
519 AGAAAGGCAGAATACGCAAGCCAGGGATCGGCCGATCCACCCTGCATGCTATCGATCCTGCTACC
* * * * *
30027905 GTAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAA
584 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGGATGAA
* **
30027970 CTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCA
649 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCA
30028032 GGATGCGCAA
Statistics
Matches: 628, Mismatches: 79, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
866 143 0.23
867 483 0.77
868 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (866 bp):
CCGACCGGAGAGGTAGAATACGCAAGCCAGGGATGAGCCCGATCCCCCCTACATGCTATCGATCC
TGCTGCTAGTCCTGCTGCAACAACCCTCGATCTGATCCAATCTCAGACATGGAATGAACTCCGTA
TGCTCAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
ACAGACCAGAGAGGCAGAATGCGCAAGTCAAGGATTGGCCCGATCCCCCCTGCGTGCTATCGATC
TTGCTACCGCAACCCTCAGTCTGATCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
CCCACAAAATGAGCATGCGGGTGCTGAGCCGACCAGAGAAGCATAATGCGCAAGCCAGGGATCGA
CCCGATCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGAATTAGAC
ATGGAATAAACTCCCTATGCCTAAGCCAACCCCCGAAACGGGCGTGCGGGCACTCAGCCGGTCAG
AAAGGCAGAATACGCAAGCCAGGGATCGGCCGATCCACCCTGCATGCTATCGATCCTGCTACCGC
AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCATAATG
CACAAGTCGAAGATCAGCCCGATCTGCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTGCT
ACAACCTTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGA
AACGAGTGTGCGGGTGCTCAA
Found at i:30027953 original size:157 final size:155
Alignment explanation
Indices: 30027465--30027953 Score: 505
Period size: 157 Copynumber: 3.1 Consensus size: 155
30027455 TTAGATATGA
* *
30027465 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGACCAGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGAG
* * * * * *
30027530 GCAGAATGCGTAAGTCGAGGATTGGCCTGATCCCCTTTGCGTGCTATCGATCTTGCTGCCGCAAC
66 GCAGAATGCGCAAGCCGGGGATTGGCC-GATCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCAAC
* * * *
30027595 CCTCAGTCTGGTCGATCTTATACTGGG
129 CCTCGGTCTGATCGATCTTAGAATGGG
* * * * * * * *
30027622 AATGAACTCCATATGCCTAAGTCAACCCACAAAATTAGCATGCGGGTGCTGAGCCGACCAGAGAA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGAG
* * * *
30027687 GCATAATGCGCAAGCCGGGGATTGGCCCGATCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAA
66 GCAGAATGCGCAAGCCGGGGATTGG-CCGATCCCCC--TGCGTGCTGTCGATCCTGCTGCCGCAA
* *
30027752 CCCTCGGTCTGACTGTGA-ATTAGACAT-GG
128 CCCTCGGTCTGA-T-CGATCTTAGA-ATGGG
* * * * * ** *
30027781 AATGAACTCCCTATGCCTAAGCCAACCCCCGAAAGGGGCGTGCGGGCGCTCAGTCGGTCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGAG
* * * * *
30027846 GCAGAATGCGCAAGCCGGGGATCGGCCGGTCCACCCTGCGTGCTGTCGATCCTGCTACTGTAACC
66 GCAGAATGCGCAAGCCGGGGATTGGCCGATCC-CCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
*
30027911 CTCGGTCTGATCCGATCTTAGATTGGG
130 CTCGGTCTGAT-CGATCTTAGAATGGG
*
30027938 AATGAACTCTGTATGC
1 AATGAACTCCGTATGC
30027954 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 56, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
156 4 0.01
157 137 0.51
158 40 0.15
159 83 0.31
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (155 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGAG
GCAGAATGCGCAAGCCGGGGATTGGCCGATCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCC
TCGGTCTGATCGATCTTAGAATGGG
Found at i:30027956 original size:26 final size:26
Alignment explanation
Indices: 30027927--30027979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30027917 CTGATCCGAT
*
30027927 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
30027953 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30027979 C
1 C
30027980 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30028673 original size:26 final size:26
Alignment explanation
Indices: 30028635--30028687 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30028625 GGCTCAAAAT
30028635 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30028661 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30028687 C
1 C
30028688 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30029183 original size:26 final size:26
Alignment explanation
Indices: 30029154--30029206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30029144 CAAGTCCGAT
30029154 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
30029180 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30029206 C
1 C
30029207 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30029599 original size:367 final size:367
Alignment explanation
Indices: 30029122--30029965 Score: 939
Period size: 367 Copynumber: 2.3 Consensus size: 367
30029112 GTGCTGTCGA
* * * ** *
30029122 TCCTACTATCGCAGCCCTCGGTCAAGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
30029187 -TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGTAGGCTG
66 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCAGACTG
* * * ** *
30029251 GAGGGGCATACGGCGCAAGCCGGGGAACAACCCGATCCCCCTCTGCGTGCTGTCGATCCCGTTGC
130 GAGAGGCATAAGGCGCAAGCCAGGGAACAACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGC
* * * * *
30029316 CTGTCTTGCTGCCACAACCCTCGAT-T-CAGTTGGGGCTTAGACATAGATTGAACTTCGTATGCC
195 CGGTCCTGCTGCCACAA-CCT-GATGTCCAGCTGGGGCTTAGACATAGAATGAACTCCGTATGCC
* ** * **
30029379 TAAGCCAACCCAGGAAA-TAA-GCATACAGGCGTTCGA-TCGATCGAAGAGGCAGAAT-CGTAAG
258 TAAGCCAACCCAGGAAACGAATG--TACAGGCACTC-ATTCGACCGAAGAGGCAGAATGCACAAG
** *
30029440 CCGGGGA-TCAACCTGGTCCCCTCCTGCGTGCTGCCAATCCTGCTACTGG
320 CCAAGGATTCAACC-GGT-CCCTCCCGCGTGCTGCCAATCCTGCTACTGG
* * * * * * *
30029489 TCCTGCTACCGCGACCCTCTGTCCGGTCCAATCTTAGACTGGGAATGAACACTGCAGGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
30029554 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGACTGG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCAGACTGG
* * * * * *
30029619 AGAGGCATAATGTGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCTTGCTACCGATCCCGCTGTC
131 AGAGGCATAAGGCGCAAGCCAGGGAACAACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCC
* * *
30029684 GGTCCTGCTGCCACAACCTTATGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
196 GGTCCTGCTGCCACAACCTGATGTCCAGCTGGGGCTTAGACATAGAATGAACTCCGTATGCCTAA
* * * *
30029749 GCCAACCCATGAAACGAATGTGCGGGCACTCATTCGACCGGAGAGGCAGAATGCACAAGCCAAGG
261 GCCAACCCAGGAAACGAATGTACAGGCACTCATTCGACCGAAGAGGCAGAATGCACAAGCCAAGG
** * ** * * *
30029814 ATTGGATCGGTCTGTCCCGCGTGCTGTCGATCCTGCTGCTGG
326 ATTCAACCGGTCCCTCCCGCGTGCTGCCAATCCTGCTACTGG
** * * * * *
30029856 TCCTGCTGTCGCAACCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
30029921 ATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGT
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
30029966 ATGGGTGCTG
Statistics
Matches: 392, Mismatches: 77, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
365 2 0.01
366 5 0.01
367 366 0.93
368 15 0.04
369 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (367 bp):
TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCAGACTGG
AGAGGCATAAGGCGCAAGCCAGGGAACAACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCC
GGTCCTGCTGCCACAACCTGATGTCCAGCTGGGGCTTAGACATAGAATGAACTCCGTATGCCTAA
GCCAACCCAGGAAACGAATGTACAGGCACTCATTCGACCGAAGAGGCAGAATGCACAAGCCAAGG
ATTCAACCGGTCCCTCCCGCGTGCTGCCAATCCTGCTACTGG
Found at i:30030996 original size:26 final size:26
Alignment explanation
Indices: 30030979--30031045 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
30030969 TAGACTGGGA
*
30030979 ATGAACTCCGTATGCTTAGATTAAGG
1 ATGAACTCCGTATGCTTAGATTAGGG
*
30031005 ATGAACTCTGTATGCTTAGATTAGGG
1 ATGAACTCCGTATGCTTAGATTAGGG
30031031 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
30031046 CTAAGTCAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGATTAGGG
Found at i:30031230 original size:26 final size:26
Alignment explanation
Indices: 30031201--30031253 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30031191 CCGATCAGAT
**
30031201 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
30031227 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
30031253 C
1 C
30031254 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:30031569 original size:26 final size:26
Alignment explanation
Indices: 30031531--30031583 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30031521 CCAATTTGAT
30031531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30031557 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30031583 C
1 C
30031584 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30031859 original size:158 final size:157
Alignment explanation
Indices: 30031557--30032059 Score: 363
Period size: 158 Copynumber: 3.2 Consensus size: 157
30031547 ACTCCGTATG
* * * * *
30031557 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAAGCGTGCG-GTCACTC
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAA-CAGGCGTGCGAG-CGCTC
* * * * * * ** * * * * * * *
30031620 AGCCAATCGGAGAGGTAGAATGCGTAAGCCGGGGATCAACCTGGTTCCCCCTTACATGCTATCGA
63 AGTCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATC-AGCTCGATCCCCCCTGCGTGCTGTCGA
* * ** *
30031685 TCCTACTACCGTAACCCTTAGTCCAGTCTGAT
127 TCCCACTGCCACAACCCTCAGTCC-GTCTGAT
* * * *
30031717 CTTAGATTGGGAATGAACTCCGTATGCGTAAG-TCAA-CCACGAAAC-GAGCGTGCGGGCGCTGA
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACAG-GCGTGCGAGCGCTCA
* * * * * ** *
30031779 GTCGGA-TGAAGAGGCATAATGCGTAAGTCGAGGATTGGCTCGATCCCCCTCTGTGTGCTGTCGA
64 GTC-GACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCCC-CTGCGTGCTGTCGA
* * **
30031843 TCCCGCTGCCACAACCCTCAGTCCGGCTGGGG
127 TCCCACTGCCACAACCCTCAGTCCGTCT-GAT
* *
30031875 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCGCGAAACAGGCGTGCGAGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAGGCGTGCGAGCGCTCAG
* *
30031939 TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCTCCTGCGTGCTGTCGATCC
65 TCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCC
* * ** * *
30032004 TACTGTCGTAACCCTCGGTCTGGTCTGAT
130 CACTGCCACAACCCTCAGTC-CGTCTGAT
* * *
30032033 CTTAGACTGGAAATGAACTCTGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
30032060 TTAGACGGGG
Statistics
Matches: 264, Mismatches: 65, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
157 13 0.05
158 147 0.56
159 73 0.28
160 31 0.12
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAGGCGTGCGAGCGCTCAGT
CGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCCC
ACTGCCACAACCCTCAGTCCGTCTGAT
Found at i:30032062 original size:26 final size:25
Alignment explanation
Indices: 30032033--30032084 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
30032023 CTGGTCTGAT
*
30032033 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGAC-GGAAATGAACTCCGTATG
**
30032059 CTTAGACGGGGATGAACTCCGTATG
1 CTTAGACGGAAATGAACTCCGTATG
30032084 C
1 C
30032085 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACGGAAATGAACTCCGTATG
Found at i:30032143 original size:13 final size:13
Alignment explanation
Indices: 30032125--30032149 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30032115 CATTCAGCCA
30032125 GTCGAAGAGGCAG
1 GTCGAAGAGGCAG
30032138 GTCGAAGAGGCA
1 GTCGAAGAGGCA
30032150 TAATGCGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.44, T:0.08
Consensus pattern (13 bp):
GTCGAAGAGGCAG
Found at i:30033731 original size:26 final size:26
Alignment explanation
Indices: 30033682--30033732 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30033672 GTTGGCTTAG
**
30033682 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCAACCCATGTCTAA
30033708 GCATACGGAGTTCACACCCA-GTCTA
1 GCATACGGAGTTCA-ACCCATGTCTA
30033733 TGAGTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCATGTCTAA
Found at i:30034440 original size:26 final size:26
Alignment explanation
Indices: 30034404--30034456 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30034394 GTTGACTTAG
30034404 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30034430 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30034456 G
1 G
30034457 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30035680 original size:183 final size:186
Alignment explanation
Indices: 30035372--30035848 Score: 477
Period size: 195 Copynumber: 2.5 Consensus size: 186
30035362 CACTCGTTCA
* * * * * * **
30035372 ATCCCCGGCTTGTGCATCCTGCCTCTCTGGTTGGCTGAGCGTCCGCACGCTCATTTTGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTG
* * * **
30035437 ACTTAGGCATACA-GAGTTCATCCCCAGTATAAGCATATGGAGTTCATTCCCAATCTAAGATCAG
65 GCTTAGGCATA-AGGAGTTCAT-TCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAG
* *
30035501 ACC-GTACTGAGGG-T-TG-C-G-GCAGCAGGATCGATAGCACGCAGGGGGACCAAGCTC-
128 ACCAG-ACCGAGGGTTGTGACAGAGCAGCAGGATCGACAGCACGCAGGGGGACCAAGC-CG
* *
30035555 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCACGCCCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC-GCACGCTCGTTTCATGGGTTG
*
30035620 GCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CCAAGTCTAAGATCGG
65 GCTTAGGCATAAGGAGTTCATTCCA-GTCTAAGCATACAGAGTTCATTCCCAA-TCTAAGATCAG
* * * **
30035684 ACCAGACCGAGGGTTGTGACAATAGGACCAGCAGCAGGATTGGCAGCACGCAGGGGGATCGGGCC
128 ACCAGACCGAGGGTTGTGAC---A-G---AGCAGCAGGATCGACAGCACGCAGGGGGACCAAGCC
30035749 G
186 G
* * *
30035750 ATCCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACACTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTG
* * *
30035815 GCTTAGGCATACGGTGTTCATTCCACATCTAAGC
65 GCTTAGGCATAAGGAGTTCATTCCA-GTCTAAGC
30035849 CTCAGCCAGA
Statistics
Matches: 243, Mismatches: 32, Indels: 26
0.81 0.11 0.09
Matches are distributed among these distances:
182 10 0.04
183 109 0.45
184 2 0.01
185 2 0.01
186 1 0.00
191 1 0.00
194 1 0.00
195 115 0.47
196 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.24
Consensus pattern (186 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATAAGGAGTTCATTCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACC
AGACCGAGGGTTGTGACAGAGCAGCAGGATCGACAGCACGCAGGGGGACCAAGCCG
Found at i:30036035 original size:26 final size:26
Alignment explanation
Indices: 30036005--30036057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30035995 GTTGACTTAG
*
30036005 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
30036031 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30036057 G
1 G
30036058 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30036534 original size:26 final size:26
Alignment explanation
Indices: 30036505--30036557 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30036495 GTTGGCTTAG
30036505 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30036531 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30036557 G
1 G
30036558 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30036750 original size:26 final size:25
Alignment explanation
Indices: 30036715--30036764 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
30036705 TTGACTTAGG
*
30036715 CATACGAGTTCATACCCAGTCTAAC
1 CATACGAGTTCATACCCAATCTAAC
*
30036740 CATACCGAGTTCATTCCCAATCTAA
1 CATA-CGAGTTCATACCCAATCTAA
30036765 GATCTAACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.32, C:0.32, G:0.10, T:0.26
Consensus pattern (25 bp):
CATACGAGTTCATACCCAATCTAAC
Found at i:30036912 original size:709 final size:709
Alignment explanation
Indices: 30035935--30037792 Score: 2554
Period size: 709 Copynumber: 2.6 Consensus size: 709
30035925 CCGACTTATG
* * * * * * *
30035935 CATTATGCCTCTCCGATCGGCCTCTCTGGCCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGA
1 CATTCTGCCTCTCCGGTCGGCCTCTCTGGCCGATTGAGCGCCTGTACGCTTGTTTCGTGGGTTGA
* * *
30036000 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA-CGAAGTTCATTCCCAGTCTAAGATC-AG
66 CTTAGGCATACGGAGTTCATACCCAGTCTAACCATACCG-AGTTCATTCCCAATCTAAGATCTA-
* * * * * * ** *
30036063 ATCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCAAAGGGGACT--GGCCGATTTGTGAC
129 ACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGC--AGGGGGCTCGGGCCGATCTCCGGC
** * * * * *
30036126 TTATGCATTCTGCCTCTCAGGCCGGCTGAGCACCCGCACGTCCATTTTGTGGGTTGGTTTAGGCA
192 TTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATG-CCTTTTTGTGGGTTGGCTTAGGCA
* *
30036191 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCA
256 TAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCA
* * *
30036256 CGGAGAGAGGGACCAGGTTGATCCCCAGCTTGCGCATTACGCCTCTCTGATCGGTTCAGTGCCTG
321 CGGAGAGAGGGACCAGGCTGATCCCCAGCTTGCGCATTACGCCTCTCCGATCGGTTCAGTGCCCG
30036321 AATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGATCAGAC
386 AATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGATCAGAC
*
30036386 CGAAGGTTGTAGCAACAGGATCGACAGCATGCAGGGGGGACC-GAGCC-GATCCCTACCTTGCGC
451 CGAAGGTTGCAGCAACAGGATCGACAGCATGCAGGGGGGACCAG-GCCAG-TCCCTACCTTGCGC
*
30036449 ATTCTACCTCCCCAGTCAGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGAA
514 ATTCTACCTCCCCAGCCAGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGAA
* * *
30036514 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGGCCGAGGGTTA
579 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTA
30036579 -CGGCAGTAGGACCAGTAGCAGGATCGGTAGCACGTAAGGGGGA-CTGGGCCGATCCCCGGCTTG
644 GCGGCAGTAGGACCAGTAGCAGGATCGGTAGCACGTAAGGGGGATC-GGGCCGATCCCCGGCTTG
*
30036642 CG
708 CA
* * *
30036644 TATTCTGCCTCTTCGGTCGGCCTCTCCGGCCGATTGAGCGCCTGTACGCTTGTTTCGTGGGTTGA
1 CATTCTGCCTCTCCGGTCGGCCTCTCTGGCCGATTGAGCGCCTGTACGCTTGTTTCGTGGGTTGA
30036709 CTTAGGCATAC-GAGTTCATACCCAGTCTAACCATACCGAGTTCATTCCCAATCTAAGATCTAAC
66 CTTAGGCATACGGAGTTCATACCCAGTCTAACCATACCGAGTTCATTCCCAATCTAAGATCTAAC
* * *
30036773 CAGACCAAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGCTCGGGCCGATCTCCGGCTTG
131 CGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCA-GGGGGCTCGGGCCGATCTCCGGCTTG
* * * *
30036838 CGCATTCTGCCTCTCCGGTCGGGTGAGTGCCCGCATGCCCTTTTTGTGGGTTGGCTTAGGTATAG
195 CGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATG-CCTTTTTGTGGGTTGGCTTAGGCATAG
*
30036903 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGG
259 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGG
* * * * * *
30036968 AGAGAGGGACCAGGCTGATCCCCAGTTTACGCATTATGCCTCTCGGACCGGCTCAGTGCCCGAAT
324 AGAGAGGGACCAGGCTGATCCCCAGCTTGCGCATTACGCCTCTCCGATCGGTTCAGTGCCCGAAT
* * * *
30037033 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCTTTCCCAGTCTAAGATCAGATCGGATCGA
389 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGATCAGACCGA
* * **
30037098 AGGTTGCAGTAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCAGTCCCTGGCTTGCGCATTCT
454 AGGTTGCAGCAACAGGATCGACAGCATGCAGGGGGGACCAGGCCAGTCCCTACCTTGCGCATTCT
* * *
30037163 ACCTCTCCAGCCGGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
519 ACCTCCCCAGCCAGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCA
* *
30037228 TTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTAGTGGC
584 TTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTAGCGGC
* * *
30037293 AGTAGGATCAGTAGCAGGATCGGTAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCA
649 AGTAGGACCAGTAGCAGGATCGGTAGCACGTAAGGGGGATCGGGCCGATCCCCGGCTTGCA
* * * *
30037354 CATTCTGCCTCTCCGGTCGACCTCTCTGGCCGGTTGAGCGCTTGCACGCTTGTTTCGTGGGTTGA
1 CATTCTGCCTCTCCGGTCGGCCTCTCTGGCCGATTGAGCGCCTGTACGCTTGTTTCGTGGGTTGA
* *
30037419 CTTAGGCATACGGAGTTCATACCTAGTCTAACCATACAGAGTTCATTCCCAATCTAAGATCTAAC
66 CTTAGGCATACGGAGTTCATACCCAGTCTAACCATACCGAGTTCATTCCCAATCTAAGATCTAAC
* * * * *
30037484 TGGACCGAA-GGTTGCGGCAGCAGGATCGACAGCGCGTAGGGGGCTCGAGTCGATCTCCGGCTTG
131 CGGACC-AAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGCTCGGGCCGATCTCCGGCTTG
* * * *
30037548 CGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCATGCCTTTTTCATGGGTTCGCTTAGGCATAG
195 CGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCTTTTT-GTGGGTTGGCTTAGGCATAG
* * * * *
30037613 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGTGGGACCAACAGCAAGC
259 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGG
* * * * * * ** *
30037678 AAAGGGGGACCAGGCCGAT-CCCTGACTTGTGCATT-CTGCCTCTCCGATCGGTTGAGCACCCGC
324 AGAGAGGGACCAGGCTGATCCCCAG-CTTGCGCATTAC-GCCTCTCCGATCGGTTCAGTGCCCGA
* * * * *
30037741 ACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAATTCATT-CCATGTCTAAG
387 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCA-GTCTAAG
30037793 CATACGGAGT
Statistics
Matches: 1011, Mismatches: 123, Indels: 29
0.87 0.11 0.02
Matches are distributed among these distances:
706 1 0.00
707 6 0.01
708 75 0.07
709 502 0.50
710 344 0.34
711 81 0.08
712 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (709 bp):
CATTCTGCCTCTCCGGTCGGCCTCTCTGGCCGATTGAGCGCCTGTACGCTTGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATACCCAGTCTAACCATACCGAGTTCATTCCCAATCTAAGATCTAAC
CGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGCTCGGGCCGATCTCCGGCTTGC
GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCTTTTTGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGGAG
AGAGGGACCAGGCTGATCCCCAGCTTGCGCATTACGCCTCTCCGATCGGTTCAGTGCCCGAATGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGATCAGACCGAAG
GTTGCAGCAACAGGATCGACAGCATGCAGGGGGGACCAGGCCAGTCCCTACCTTGCGCATTCTAC
CTCCCCAGCCAGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT
CCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTAGCGGCAG
TAGGACCAGTAGCAGGATCGGTAGCACGTAAGGGGGATCGGGCCGATCCCCGGCTTGCA
Found at i:30037067 original size:159 final size:159
Alignment explanation
Indices: 30036863--30037242 Score: 367
Period size: 158 Copynumber: 2.4 Consensus size: 159
30036853 CGGTCGGGTG
* * * * * * *
30036863 AGTGCCCGCATGCCCTTTTTGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGTGCCCGAATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* ** * * *
30036928 A-ACCGGA-CTGAGGGTTGTGGCAGCGGGACCGACAGCACGGAGAGAGGGACCAGG-CTGATCCC
66 AGACCGGATC-GAAGGTTGCAGCAGCAGGACCGACAGCACGCAG-GAGGGACCAGGCCAG-TCCC
* * *
30036990 CAGTTTACGCATTATGCCTCT-CGGACCGGCTC
128 CAGCTTACGCATTATACCTCTCCAG-CCGGCTC
* * * *
30037022 AGTGCCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCTTTCCCA-GTCTAAG-AT
1 AGTGCCCGAATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * * * **
30037085 CAGATCGGATCGAAGGTTGCAGTAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCAGTCCCTG
65 CAGACCGGATCGAAGGTTGCAGCAGCAGGACCGACAGCACGCAGGAGGGACCAGGCCAGTCCCCA
* * * *
30037150 GCTTGCGCATTCTACCTCTCCAGCCGGTTG
130 GCTTACGCATTATACCTCTCCAGCCGGCTC
* * *
30037180 AGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 AGTGCCCGAATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30037243 TATGGAGTTC
Statistics
Matches: 177, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 87 0.49
159 83 0.47
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
AGTGCCCGAATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGACCGGATCGAAGGTTGCAGCAGCAGGACCGACAGCACGCAGGAGGGACCAGGCCAGTCCCCAG
CTTACGCATTATACCTCTCCAGCCGGCTC
Found at i:30037264 original size:26 final size:26
Alignment explanation
Indices: 30037214--30037266 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30037204 GTTGGCTTAG
*
30037214 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
30037240 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
30037266 G
1 G
30037267 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:30037474 original size:26 final size:26
Alignment explanation
Indices: 30037425--30037475 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
30037415 TTGACTTAGG
* * *
30037425 CATACGGAGTTCATACCTAGTCTAAC
1 CATACAGAGTTCATACCCAATCTAAC
*
30037451 CATACAGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATACCCAATCTAA
30037476 GATCTAACTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATACCCAATCTAAC
Found at i:30037805 original size:26 final size:26
Alignment explanation
Indices: 30037767--30037818 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30037757 TTGGCTTAGT
30037767 CATACGGAATTCATT-CCATGTCTAAG
1 CATACGGAATTCATTCCCA-GTCTAAG
*
30037793 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAATTCATTCCCAGTCTAAG
30037819 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAATTCATTCCCAGTCTAAG
Found at i:30037908 original size:11 final size:11
Alignment explanation
Indices: 30037888--30037917 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
30037878 CTCAAGGCAC
30037888 CATCACCGGAG
1 CATCACCGGAG
*
30037899 CATTACCGGAG
1 CATCACCGGAG
30037910 CATCACCG
1 CATCACCG
30037918 AAGAGCCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.37, G:0.23, T:0.13
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:30038530 original size:26 final size:26
Alignment explanation
Indices: 30038501--30038552 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30038491 GTTGACTTAG
*
30038501 GCATACGAATTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
30038527 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30038553 CATCGGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30039203 original size:26 final size:26
Alignment explanation
Indices: 30039167--30039219 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30039157 GTTGACTTAG
30039167 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30039193 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30039219 G
1 G
30039220 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30039671 original size:158 final size:157
Alignment explanation
Indices: 30039193--30039694 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 157
30039183 CCCAGTCTAA
* * * * *
30039193 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGCGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAAGATTGATA
* * * * *
30039258 GCACGAAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTTTGGCTCTCCGGTCGACTGAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTT-CCTCTCCGGTCGGCTGAGCGCC
30039323 CGCACG-TCCGTTTCATGGGTTGGCTTAG
130 CGCACGCT-CGTTTCATGGGTTGGCTTAG
* * ** * * * * * *
30039351 GCATAGGGAGTTCATT-CGATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTGGTAGCGAGACTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGATAGCAAGATTGA
* * * * * *
30039414 TAGCATGTTGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
64 TAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATT-TTCCTCTCCGGTCGGCTGAGC
* * * ** *
30039479 ACCCGAACGCTCATTTCATGGGTTAACTTTG
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
30039510 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAAGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAAGATTGATA
* * * ** *
30039575 GCACGTAGGGGGGACCGGGCCGGTCTCCGGCTTGCGCATTCTTTCTCTAAGGCCGGCTGAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT-TTCCTCTCCGGTCGGCTGAGCGCC
*
30039640 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
30039668 GCATACGGAGTTCATTCCCTA-TCTAAG
1 GCATACGGAGTTCATTCCC-AGTCTAAG
30039695 CATACGGAGT
Statistics
Matches: 272, Mismatches: 64, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 143 0.53
159 123 0.45
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAAGATTGATA
GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Done.