Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 323 of 402
Found at i:30039894 original size:513 final size:500
Alignment explanation
Indices: 30039124--30040048 Score: 1144
Period size: 513 Copynumber: 1.8 Consensus size: 500
30039114 CAACCACTCT
* * *
30039124 GGCCGGTTGTGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* ** *
30039189 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGCGTTGCGATAGCAGGATC
66 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGCGTTGCGATAACAGGATC
* * * *
30039254 GACAGCACGAAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTTTGGCTCTCCGGTCGACTGAG
131 GACAGCACGAAGGGGGGACCGGGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGCTCGACTGAG
* * * *
30039319 CGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAG
196 CGCCCACACGTCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAG
* * ** *****
30039384 TC-GAACCGAGGGTTGTGGTAGCGAGACTGGTAGCATGTTGAGGGGGACCAGGTCGATCCCCGGC
261 TCAG-ACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAAAGGGGGACCAGGTCGATCCCCGGC
* * * *
30039448 TTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGAACGCTCATTTCATGGGTTAACTTTGGCA
325 TTGCGCATTATGCCTCTCCGGACAGCACAGCACCCGAACGCTCATTTCATGGGTTAACTTAGGCA
30039513 TACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAAGATTGATAGC
390 TA-GGAGTTCATT-CCATGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAAGATTGATAGC
30039577 ACGTAGGGGGGACCGGGCCGGTCTCCGGCTTGCGCATTCTTTCTCTAA
453 ACGTAGGGGGGACCGGGCCGGTCTCCGGCTTGCGCATTCTTTCTCTAA
* * *
30039625 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAG
* ** *
30039689 TCTAAGCATACGGAGTTCATT-CTAGTCTAAGATTGGATCAAACCGAGGGTTGTGGTAGCAGGAC
65 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGA--G-CGT--T-GC--G--
* *
30039753 CAATAACAGGATCGACAGCACGTAGTGGGGGACTGGG-TCGATCCCCGGCTTATGCATTCTGCCT
120 --ATAACAGGATCGACAGCACGAAG-GGGGGACCGGGCT-GATCCCCGGCTTATGCATTCTGCCT
* *
30039817 CTCCGACT-GACTGAGCGCCCACACG-CCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCCTT
181 CTCCG-CTCGACTGAGCGCCCACACGTCC-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
* * *
30039880 CCATGTCAAAGCCCCAGTCAGACTGAGGGTTGTGGCAGTGGGACCGACAGCACACAAAGGGGGAC
244 CCATGTCAAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAAAGGGGGAC
* * * * * * * **
30039945 CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGACAGCAGAGCGCCCGCACGCTCGTTTTG
309 CAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGACAGCACAGCACCCGAACGCTCATTTCA
**
30040010 TGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAG
374 TGGGTTAACTTAGGCATAGGAGTTCATTCCATGTCTAAG
30040049 CATACGGAGT
Statistics
Matches: 352, Mismatches: 53, Indels: 27
0.81 0.12 0.06
Matches are distributed among these distances:
500 20 0.06
501 72 0.20
502 6 0.02
503 2 0.01
505 1 0.00
506 2 0.01
508 1 0.00
511 3 0.01
512 41 0.12
513 202 0.57
514 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (500 bp):
GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGCGTTGCGATAACAGGATC
GACAGCACGAAGGGGGGACCGGGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGCTCGACTGAG
CGCCCACACGTCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAG
TCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAAAGGGGGACCAGGTCGATCCCCGGCT
TGCGCATTATGCCTCTCCGGACAGCACAGCACCCGAACGCTCATTTCATGGGTTAACTTAGGCAT
AGGAGTTCATTCCATGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAAGATTGATAGCACG
TAGGGGGGACCGGGCCGGTCTCCGGCTTGCGCATTCTTTCTCTAA
Found at i:30040058 original size:26 final size:25
Alignment explanation
Indices: 30040023--30040072 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
30040013 GTTGGCTTAG
30040023 GCATAGGAGTTCATTCCATGTCTAA
1 GCATAGGAGTTCATTCCATGTCTAA
30040048 GCATACGGAGTTCATTCCATGTCTA
1 GCATA-GGAGTTCATTCCATGTCTA
30040073 GAAGTTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCATGTCTAA
Found at i:30040700 original size:26 final size:26
Alignment explanation
Indices: 30040671--30040729 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
30040661 GTTGACTTAG
* *
30040671 GCATATGGATTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
30040697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30040723 -CAT-CGGA
1 GCATACGGA
30040730 CCGGACCAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 19 0.63
27 4 0.13
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30041829 original size:160 final size:156
Alignment explanation
Indices: 30041445--30042670 Score: 603
Period size: 159 Copynumber: 7.6 Consensus size: 156
30041435 CGATCCCCAA
* * * *
30041445 CTTGCGCATT-TGCCTCTCCGACCGGCTGAGCGCCTGTACACTCGTTTCGTTTGGTAGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCG-TGGGTTGCTTAGGC
* * * * * * * *
30041509 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGAACCGACGGTTGTGGCAACGGGACCGGTAAC
65 ATA-GGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTATGGCAGCAGGACTGGTAGC
* * * *
30041574 ATGCAGGGAGGACCGAGCCAATCCCCA-G
129 ACGCAGGGGGGACCGGGCCGAT-CCCAGG
* *
30041602 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT-GCTTAGGC
* * *
30041667 ATAGTGAGTTCATTCCATATCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGCAGGACTGGCAGC
65 ATAG-GAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTATGGCAGCAGGACTGGTAGC
*
30041732 ACGCAGAGGGGGATCGGGCCGATCCCGAGG
129 ACGCAG-GGGGGACCGGGCCGATCCC-AGG
* * ** * * *
30041762 CTTACGCATTATGCCTCTCCGATTGGCTCAGTGCCCGTACGCTCGTTTCGTGGCTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG-CTTAGGC
* * ** * * *
30041827 ATACAGAGTTTATTCCCA-GTCTAAG-ATCAGACCAGAAC-AAGGGTTACGGCAGCAGGA-TCGG
65 ATA-GGAGTTCATT-CCATGTCTAAGCCCCAG-TC-GAACTGAGGGTTATGGCAGCAGGACT-GG
* * *
30041888 TAGCACGTAGGGGGGGACCGGGTCGATCCCCGG
125 TAGCACGCA-GGGGGGACCGGGCCGATCCCAGG
* * * * * *
30041921 CTTGCACATTCTACCTCTCC-AGTCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGCCTTAGG
1 CTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG-CTTAGG
* * * *
30041985 CATACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACTGAGGGTTGTGGCAGCAGGACCGACAG
64 CATA-GGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTATGGCAGCAGGACTG---G
* * * ** **
30042050 CAGGATCGATAGCATGTAGAAGGGGATCGGGTTGATCCTTGG
125 TA-G--C-A-CGCA-G--G--GGGGACCGGGCCGATCCCAGG
* * * * *
30042092 CTTGTGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCAGGCTCGTTTCTTGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG-CTTAGGC
* ** * * * * * *
30042157 ATACGGAGTTCA-TCCCTAGTCTAAGCATATGAAATTCATTCCTAATCT-AAGATCA-GATCAAA
65 ATA-GGAGTTCATTCCAT-GTCTAAGC--------CCCAGT-CGAA-CTGAGGGTTATG-GC--A
* ** * * *
30042219 CCGAGGGTTGTGGCAGCACGCA-GGGGGCCCGAGCCGATCCCTA-G
115 GC-A-GG-ACTGGTAGCACGCAGGGGGGACCGGGCCGATCCC-AGG
* * * * ** * * * *
30042263 CTTACGCATTTTGCCTCTCC-AGTCGGCTAAGCATCCGCACGCCCGTTTTGTGGGTAGACTTAGG
1 CTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG-CTTAGG
* * * * **
30042327 CATAGGGATTTCATTCCATGTCTAAGCCCCAGTCGGA-TCGAGGGTTGTGGCAGCAGGACCGACA
64 CATA-GGAGTTCATTCCATGTCTAAGCCCCAGTCGAACT-GAGGGTTATGGCAGCAGGACTGGTA
* * *
30042391 GCATGCAGAGGGGGACCGGGCTGATCCCTGG
127 GCACGCAG-GGGGGACCGGGCCGATCCCAGG
* * * *** * * * * *
30042422 CTTGTGCATTATGACTCTCCGGTTGGCTTAGCGCCCGAATGCTCATTTCCTGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG-CTTAGGC
* ** * ** * * * * **
30042487 ATACGAAGTTCATTCCCA-GTCTAAGATCAAACCGGA-TCGAGGGTTACGACAGCAGGATTGACA
65 ATA-GGAGTTCATT-CCATGTCTAAGCCCCAGTCGAACT-GAGGGTTATGGCAGCAGGACTGGTA
* * ** * * *
30042550 ACACGCAGGGGTGACCATGTCGGTCCCTGG
127 GCACGCAGGGGGGACCGGGCCGATCCCAGG
* * * * * * *
30042580 CTTGTGCATTCTGCCTCTCCGGCTGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT-GCTTAGGC
30042645 ATACGGAGTTCATTCCATGTCTAAGC
65 ATA-GGAGTTCATTCCATGTCTAAGC
30042671 ATATGGAGTT
Statistics
Matches: 814, Mismatches: 194, Indels: 121
0.72 0.17 0.11
Matches are distributed among these distances:
157 27 0.03
158 201 0.25
159 226 0.28
160 125 0.15
161 7 0.01
162 8 0.01
163 5 0.01
165 1 0.00
166 1 0.00
167 3 0.00
169 1 0.00
170 5 0.01
171 172 0.21
172 5 0.01
173 1 0.00
177 3 0.00
178 1 0.00
179 5 0.01
180 5 0.01
181 3 0.00
182 5 0.01
183 1 0.00
184 2 0.00
185 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGCTTAGGCA
TAGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTATGGCAGCAGGACTGGTAGCAC
GCAGGGGGGACCGGGCCGATCCCAGG
Found at i:30042529 original size:159 final size:158
Alignment explanation
Indices: 30042313--30042669 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 158
30042303 GCCCGTTTTG
* * * * ** * ** ** *
30042313 TGGGTAGACTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAAACCGGATCGAGGGTTACGAC
* * *
30042378 AGCAGGACCGACAGCATGCAGAGGGGGACC-GGGCTGATCCCTGGCTTGTGCATTATGACTCTCC
66 AGCAGGACCGACAACACGCAG-GGGGGACCAGGTC-GATCCCTGGCTTGTGCATTATGACTCTCC
* * * ** *
30042442 GGTTGGCTTAGCGCCCGAATGCTCATTTCC
129 GGCTGACTGAGCGCCCGAACACTCATTTCA
30042472 TGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAAACCGGATCGAGGGTTACGA
1 TGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGATCAAACCGGATCGAGGGTTACGA
** * * * * *
30042536 CAGCAGGATTGACAACACGCAGGGGTGACCATGTCGGTCCCTGGCTTGTGCATTCTGCCTCTCCG
65 CAGCAGGACCGACAACACGCAGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTATGACTCTCCG
* *
30042601 GCTGACTGAGCGCCCGCACACTCGTTTCA
130 GCTGACTGAGCGCCCGAACACTCATTTCA
* *
30042630 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG
30042670 CATATGGAGT
Statistics
Matches: 163, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.02
158 89 0.55
159 68 0.42
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
TGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAAACCGGATCGAGGGTTACGAC
AGCAGGACCGACAACACGCAGGGGGGACCAGGTCGATCCCTGGCTTGTGCATTATGACTCTCCGG
CTGACTGAGCGCCCGAACACTCATTTCA
Found at i:30042693 original size:26 final size:26
Alignment explanation
Indices: 30042643--30042695 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30042633 GTTGGCTTAG
*
30042643 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
30042669 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
30042695 G
1 G
30042696 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:30043439 original size:26 final size:26
Alignment explanation
Indices: 30043409--30043461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30043399 GTTGACTTAG
*
30043409 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
30043435 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
30043461 G
1 G
30043462 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:30043628 original size:26 final size:26
Alignment explanation
Indices: 30043592--30043644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30043582 GTTGGCTTAG
*
30043592 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30043618 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30043644 G
1 G
30043645 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30044344 original size:26 final size:26
Alignment explanation
Indices: 30044314--30044366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30044304 GTTGGCTTAG
*
30044314 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATCGAGTTCATCCCCAGTCTAA
*
30044340 GCATATCGAGTTCATTCCCAGTCTAA
1 GCATATCGAGTTCATCCCCAGTCTAA
30044366 G
1 G
30044367 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATCGAGTTCATCCCCAGTCTAA
Found at i:30044688 original size:159 final size:160
Alignment explanation
Indices: 30044435--30044828 Score: 442
Period size: 159 Copynumber: 2.5 Consensus size: 160
30044425 ATGCATTCTA
* * * * * *
30044435 CCTCTCCGA-CGGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 CCTCTCCGATC-GACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* ** * * *
30044499 TT-CCATGTCTAAGCCCCAGGTGGACCGAGGGTTGTGGCAG-AGGGATCGACAGCATGCA-GAGG
65 TTCCCATGTCTAAGCACCAGCCGGACCGAGGGTTGTGGCAGCA-GAATCGACAACACGCATGA-G
* *
30044561 GGGATCGGGCCGATCCCCGACTTGCGCATTATG
128 GGGACCGGGCCGATCCCCGACTTGCACATTATG
* * *
30044594 CCTTTTCGATCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** * * *
30044659 TCCCA-GTCTAAG-ATTAGACCGGACCGAGGGTTGTGGTAGCAGAATGGGCAACACGCATGAGGG
66 TCCCATGTCTAAGCACCAG-CCGGACCGAGGGTTGTGGCAGCAGAATCGACAACACGCATGAGGG
* *
30044722 GACCGGGTCGATCCCCGACTTGCACATTCTG
130 GACCGGGCCGATCCCCGACTTGCACATTATG
* * * *
30044753 CCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGCCTTAGGCATTCGGAGTTCAT
1 CCTCTCCGATCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
30044818 T-CTATGTCTAA
66 TCCCATGTCTAA
30044829 TCCCCTGTCG
Statistics
Matches: 197, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
158 4 0.02
159 186 0.94
160 7 0.04
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
CCTCTCCGATCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCATGTCTAAGCACCAGCCGGACCGAGGGTTGTGGCAGCAGAATCGACAACACGCATGAGGGG
ACCGGGCCGATCCCCGACTTGCACATTATG
Found at i:30045395 original size:159 final size:158
Alignment explanation
Indices: 30045153--30045514 Score: 342
Period size: 158 Copynumber: 2.3 Consensus size: 158
30045143 TCTACGCCTG
* * * * * * *
30045153 TTTCGTGGGTTGCCTTAGGCAGAGGGAGTTCATTCCGT-GTCTATGCCCTAACCGGACTGAGGGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGACCTAACCGGACCGAGAGT
* * * * * *
30045217 TGTGGCAGCGGGACTGACAGCACGTAGAACTGGACCG-AGCCGATCCTCGGCTTGCT-CATTATG
65 TATGACAGCAGGACTGACAGCACGCAG-ACGGGACCGTA-CCAATCCTCGGCTTG-TGCATTATG
* * * * *
30045280 CCTCTCCGACTGGCTCAACGTCTATACGCTCA
127 CCTCTCCGACCGACTCAACGCCTACACACTCA
*
30045312 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AGACCGGACCGAGAGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCTA-ACCGGACCGAGAGT
* * ** *
30045376 TATGACAGTAGGA-TCGACAGCATGCAGGGGGGACCGTACCAATCCTCGGCTTGTGCATTCTGCC
65 TATGACAGCAGGACT-GACAGCACGCAGACGGGACCGTACCAATCCTCGGCTTGTGCATTATGCC
* * * *
30045440 TCTCCGACCGACTGAGCGCCTGCACACTCG
129 TCTCCGACCGACTCAACGCCTACACACTCA
*
30045470 TTTCGTGGGTT-AGCTTAGGCATACGGAGTTCGTTCC-ATGTCTAAG
1 TTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCTA-GTCTAAG
30045515 CATATGGAGT
Statistics
Matches: 167, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 92 0.55
159 72 0.43
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (158 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCTAACCGGACCGAGAGTT
ATGACAGCAGGACTGACAGCACGCAGACGGGACCGTACCAATCCTCGGCTTGTGCATTATGCCTC
TCCGACCGACTCAACGCCTACACACTCA
Found at i:30045905 original size:26 final size:26
Alignment explanation
Indices: 30045866--30045921 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
30045856 TGGGTTGACT
30045866 TAAGCATACAGAGTTCA-TCCCTAGTC
1 TAAGCATACAGAGTTCATTCCC-AGTC
** *
30045892 TAAGCATATGGAGTTTATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
30045918 TAAG
1 TAAG
30045922 ATTGGACAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:30046257 original size:159 final size:156
Alignment explanation
Indices: 30045895--30046334 Score: 431
Period size: 159 Copynumber: 2.8 Consensus size: 156
30045885 CCTAGTCTAA
* ** *
30045895 GCATATGGAGTTTATTCCCAGTCTAAGATTGGA-CAGGACCGAGGGTTGCAGCAGCAAGATCGAC
1 GCATA-GGAGTTTATTCCCAGTCTAAGATCGGATCA-GACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
30045959 AGCACGCAGGGGGGATTGAGCTGATCCACGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCAC
64 AGCACGCAGGGGGGATCGAGTTGATCC-CGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCAC
**
30046024 CCATACGTCTGTTTCATGGGTTGGCTTAG
128 CCATACGTCTAATTCATGGGTTGGCTTAG
* * ** * * * * *
30046053 GCATAGGTAGTTCATT-CCATGTCTAAG-CCCTAGTCGGACCAAGGGTTGTGGCAACGGGATCGG
1 GCATAGG-AGTTTATTCCCA-GTCTAAGATCGGA-TCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * *
30046116 CAGCATGCAGAGGGGGATCGGGTTGATCTCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGT
63 CAGCACGCAG-GGGGGATCGAGTTGATC-CCGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGC
*
30046181 GCCCGA-ACGGTC-AATTCATGGGTTGGCTTAG
126 ACCC-ATAC-GTCTAATTCATGGGTTGGCTTAG
* *
30046212 GCATACGGAGTTTATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTATGGCAGTAGGATCGACA
1 GCATA-GGAGTTTATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
30046277 GGACGCAGGGGGGATCCAGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCAATCGGCT
65 GCACGCAGGGGGGATCGAGTTGAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
30046335 GAACACCCGC
Statistics
Matches: 224, Mismatches: 46, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.03
158 89 0.40
159 117 0.52
160 12 0.05
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATAGGAGTTTATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGATCGAGTTGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCACCCA
TACGTCTAATTCATGGGTTGGCTTAG
Found at i:30046374 original size:158 final size:158
Alignment explanation
Indices: 30045895--30046395 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 158
30045885 CCTAGTCTAA
* * * ** *
30045895 GCATATGGAGTTTATTCCCAGTCTAAGATTGGA-CAGGACCGAGGGTTGCAGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA-GACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
30045959 AGCACGCAGGGGGGATTGAG-CTGATCCACGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCA
65 AGCACGCAGGGGGGATCGAGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
*
30046023 -CC-CATACGTC-TGTTTCATGGGTTGGCTTAG
129 CCCGCATGC-TCAT-TTT-ATGGGTTGGCTTAG
* ** * * * *
30046053 GCATA-GGTAGTTCATT-CCATGTCTAAG-CCCTAGTCGGACCAAGGGTTGTGGCAACGGGATCG
1 GCATACGG-AGTTCATTCCCA-GTCTAAGATCGGA-TCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * * *
30046115 GCAGCATGCAGAGGGGGATCGGGTTGATCTCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAG
63 ACAGCACGCAG-GGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
** * * * * *
30046180 TGCCCGAACGGTCAATTCATGGGTTGGCTTAG
127 CACCCGCATGCTCATTTTATGGGTTGGCTTAG
* * *
30046212 GCATACGGAGTTTATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTATGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
30046277 GGACGCAGGGGGGATCCAGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCAATCGGCTGAACACC
66 GCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
* *
30046342 CGCATGCTCATTTTGTGGGTTGACTTAG
131 CGCATGCTCATTTTATGGGTTGGCTTAG
* *
30046370 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30046396 CCATACAGAG
Statistics
Matches: 264, Mismatches: 67, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 6 0.02
158 137 0.52
159 107 0.41
160 13 0.05
161 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
CGCATGCTCATTTTATGGGTTGGCTTAG
Found at i:30046407 original size:26 final size:26
Alignment explanation
Indices: 30046371--30046421 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30046361 TTGACTTAGG
*
30046371 CATACGGAGTTCATCCCCAATCTAAC
1 CATACAGAGTTCATCCCCAATCTAAC
* *
30046397 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAATCTAA
30046422 GATCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAC
Found at i:30046409 original size:882 final size:880
Alignment explanation
Indices: 30044729--30046613 Score: 1986
Period size: 882 Copynumber: 2.1 Consensus size: 880
30044719 GGGGACCGGG
* * * *
30044729 TCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCCGACTTGCACATTCTACCCCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGG
* * * * *
30044794 TTGCCTTAGGCATTCGGAGTTCATTCTATGTCTAATCCCCTGTCGGAGTGAGGGGTTATGGCAGC
66 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAGTGAGGGGTTATGGCAGC
* * * * *
30044859 AGGACCGACAGCGGGATAGGCAGCACATAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTAT
131 AGGACCGACAGCGGGATAGGCAGCACACAGAGGGGGACCAGGCTAATCCCTGGCTTACGCATTAT
* * * * ** * ** *
30044924 GGCTCTCCGGTCGGCCCCTCTGACTGGCTGAGCTACCGCATGCTCGTTTCGTGGGTTGACTTAGG
196 GCCTCTCCGATCGACCCCTCAGACCAGCTGAGCTACCGCACGCTCGTTTAATGGGTTGACTTAAG
* * *
30044989 CATGCGGAGTTCATCCCCTATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGAACC
261 CATACAGAGTTCATCCCCTATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACAGAACC
** * * *
30045054 GAGGGTCGTGGCTATAGGATCGACAGCACGCAGGGGGACCGAGCCGATCACCGTCTTACGCAATC
326 GAGGGTCGCAGCTACAAGATCGACAGCACGCAGGGGGACCGAGCCGATCACCGGCTTACGCAATC
* *
30045119 TACGTCTCCGACAGGTGGAGCACCTCTACGCCTGTTTCGTGGGTTGCCTTAGGCAGAGGGAGTTC
391 TACCTCTCCGACAGGTGGAGCACCTCTACGCCTGTTTCATGGGTTGCCTTAGGCAGAGGGAGTTC
* * ** * * *
30045184 ATTCCGTGTCTATGCCCTAACCGGACTGAGGGTTGTGGCAGCGGGACTGACAGCACGTAGAACTG
456 ATTCCATGTCTAAGCCCTAACCGGACCAAGGGTTGTGGCAACGGGACTGACAGCACGCAGAACGG
* * * *
30045249 GACCGAGCCGATCCTCGGCTTGCTCATTATGCCTCTCCGACTGGCTCAACGTCTATACGCTCATT
521 GACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAACGCCGATACGCTCAAT
* * *
30045314 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGAGTTAT
586 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTAT
* * * *
30045379 GACAGTAGGATCGACAGCATGCAGGGGGGACCGTACCAATCCTCGGCTTGTGCATTCTGCCTCTC
651 GACAGTAGGATCGACAGCACGCAGGGGGGACCGTA-CAATCCCCGACTTGCGCATTCTGCCTCTC
* * * * * * * *
30045444 CGACCGACTGAGCGCCTGCACACTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCGTTCCATG
715 CAACCGACTGAACACCCGCACACTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATCCCATA
* **
30045509 TCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGAACTGGACTGAGGGTTGCGGCAGCAAGAC
780 TCTAACCATACAGAGTTCATTCCCAATCTAAGATCGAACTGGACTGAGGGTTGCGGCAGCAAGAC
30045574 CAGTAGCAGGATCAACAACACGCCGTGGGGACCAAA
845 CAGTAGCAGGATCAACAACACGCCGTGGGGACCAAA
* ** * * *
30045610 TCGATCCCCGGCTTGTGCATTCTACCCCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGACTTGCACATTCTACCCCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGG
* * * *
30045675 TTGACTTAGGTATACGGAGTTCATTCCATGTCTAAGCCTCAGTCGGA-TCGAGGGTTTGTGGCAG
66 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAGT-GAGGGGTTATGGCAG
* ** * *
30045739 CAGGACCGGCAGCGGGATCTGCAGCACGCAGAGGGGGACCAGGCTAATCCCTGGCTTACGTATTA
130 CAGGACCGACAGCGGGATAGGCAGCACACAGAGGGGGACCAGGCTAATCCCTGGCTTACGCATTA
* * ** *
30045804 TGCCTTTTCGATCGACCTTTTCAG-CCAGCTGAGC-CCTCGCACGCTCGTTTAATGGGTTGACTT
195 TGCCTCTCCGATCGACC-CCTCAGACCAGCTGAGCTAC-CGCACGCTCGTTTAATGGGTTGACTT
* * *
30045867 AAGCATACAGAGTTCAT-CCCTAGTCTAAGCATATGGAGTTTATTCCCAGTCTAAGATTGGACAG
258 AAGCATACAGAGTTCATCCCCTA-TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACAG
* * ** *
30045931 GACCGAGGGTTGCAGC-AGCAAGATCGACAGCACGCAGGGGGGATTGAGCTGATC-CACGGCTTA
322 AACCGAGGGTCGCAGCTA-CAAGATCGACAGCACGCA-GGGGGACCGAGCCGATCAC-CGGCTTA
* * * *
30045994 CGCATTCTACCTCTCCGGTC-GGCT-GAGCACC-CATACGTCTGTTTCATGGGTTGGCTTAGGCA
384 CGCAATCTACCTCTCC-GACAGG-TGGAGCACCTC-TACGCCTGTTTCATGGGTTGCCTTAGGCA
* * ** *
30046056 TAGGTAGTTCATTCCATGTCTAAGCCCTAGTCGGACCAAGGGTTGTGGCAACGGGA-TCGGCAGC
446 GAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCAAGGGTTGTGGCAACGGGACT-GACAGC
* ** * * ** **
30046120 ATGCAGAGGGGGATCGGGTTGAT-CTCCGGCTTGCGCATTATGCCTCTCCGA-TCGGCTCAGTGC
510 ACGCAGAACGGGACCGAGCCGATCCT-CGGCTTGCGCATTATGCCTCTCCGACT-GGCTCAACG-
* * * * *
30046183 CCGA-ACGGTCAATTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGATC
572 CCGATACGCTCAATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * **
30046247 AGACCGAGGGTTATGGCAGTAGGATCGACAGGACGCAGGGGGGATCCAGT-CGGTCCCCGACTTG
637 AGACCGAGAGTTATGACAGTAGGATCGACAGCACGCAGGGGGGA-CC-GTACAATCCCCGACTTG
* * ** *
30046311 CGCATTCTGCCTCTCCAATCGGCTGAACACCCGCATGCTCATTTTGTGGGTT-GACTTAGGCATA
700 CGCATTCTGCCTCTCCAACCGACTGAACACCCGCACACTCATTTCGTGGGTTAG-CTTAGGCATA
* * * **
30046375 CGGAGTTCATCCCCA-ATCTAACCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGAACCAA
764 CGGAGTTCAT-CCCATATCTAACCATACAGAGTTCATTCCCAATCTAAGATCGA-ACTGGACTGA
* *** * * * * **
30046438 AGGTTGCGGCAGC-AG----G--GCAGGATCGGTAGCTCGCAGGGGGGACCAGG
827 GGGTTGCGGCAGCAAGACCAGTAGCAGGATCAACAACACGCCGTGGGGACCAAA
* * * * * ** * * * * *
30046485 CCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCTG-CTGAGCGTTCACACACCCATTTCGTGG
1 TCGATCCCCGACTTGCACATTCTACCCCTCCGACC-GACTGAGCGCCCGCACGCTCGTTTCATGG
* * * * **
30046549 GTTGGCTTAGGCGTAAGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGA-GGGTTATGGCAG
65 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAGTGAGGGGTTATGGCAG
30046613 C
130 C
30046614 GAGACTGACA
Statistics
Matches: 822, Mismatches: 161, Indels: 49
0.80 0.16 0.05
Matches are distributed among these distances:
874 11 0.01
875 115 0.14
876 1 0.00
877 1 0.00
880 8 0.01
881 295 0.36
882 379 0.46
883 10 0.01
884 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (880 bp):
TCGATCCCCGACTTGCACATTCTACCCCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAGTGAGGGGTTATGGCAGC
AGGACCGACAGCGGGATAGGCAGCACACAGAGGGGGACCAGGCTAATCCCTGGCTTACGCATTAT
GCCTCTCCGATCGACCCCTCAGACCAGCTGAGCTACCGCACGCTCGTTTAATGGGTTGACTTAAG
CATACAGAGTTCATCCCCTATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACAGAACC
GAGGGTCGCAGCTACAAGATCGACAGCACGCAGGGGGACCGAGCCGATCACCGGCTTACGCAATC
TACCTCTCCGACAGGTGGAGCACCTCTACGCCTGTTTCATGGGTTGCCTTAGGCAGAGGGAGTTC
ATTCCATGTCTAAGCCCTAACCGGACCAAGGGTTGTGGCAACGGGACTGACAGCACGCAGAACGG
GACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAACGCCGATACGCTCAAT
TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTAT
GACAGTAGGATCGACAGCACGCAGGGGGGACCGTACAATCCCCGACTTGCGCATTCTGCCTCTCC
AACCGACTGAACACCCGCACACTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATCCCATAT
CTAACCATACAGAGTTCATTCCCAATCTAAGATCGAACTGGACTGAGGGTTGCGGCAGCAAGACC
AGTAGCAGGATCAACAACACGCCGTGGGGACCAAA
Found at i:30047997 original size:26 final size:26
Alignment explanation
Indices: 30047967--30048019 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30047957 GTTGACTTAG
*
30047967 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
30047993 GCATACATAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
30048019 G
1 G
30048020 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:30048514 original size:158 final size:158
Alignment explanation
Indices: 30048137--30048525 Score: 401
Period size: 158 Copynumber: 2.4 Consensus size: 158
30048127 ACCCATTTTT
* * * *
30048137 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGTACTGAAGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACAG-ACCGAAGGTTGTGGT
** ** *
30048202 AGTGGGATCGACAACACGCAGAGGGGGACCGACTCGATCCCCTACTCGTGCATTATGCCTCTTCG
65 AGCAGGATCGACAACACGCAGAGGGGGACCGACTCGATCCCCTACTCACGCATTATGCCTCTCCG
** *
30048267 GTCAGCTCAGTGCCCGAACGCTCGTTTCA
130 ACCAGCTCAGAGCCCGAACGCTCGTTTCA
* * * ** * * *
30048296 TGGATTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAG-ATCAGACCAGATCAAAGGTTGCG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCA-A-CAGACCGAAGGTTGTG
* * * * *
30048359 GTAGCAGGATCGACAGCATGCAG-GGGGGACCGAGC-CGGT-CCCTAGCTTACGCATTCTGCCTC
63 GTAGCAGGATCGACAACACGCAGAGGGGGACCGA-CTCGATCCCCTA-CTCACGCATTATGCCTC
* * * * *
30048421 TCCGACCGGTTGAGAGCCCGCACGCTCGTTTCG
126 TCCGACCAGCTCAGAGCCCGAACGCTCGTTTCA
*
30048454 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCAGACCGAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAA-CAGACCGAAGGTTGTGGT
30048519 AGCAGGA
65 AGCAGGA
30048526 CTGGCAGCGA
Statistics
Matches: 183, Mismatches: 40, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.03
158 110 0.60
159 66 0.36
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACAGACCGAAGGTTGTGGTA
GCAGGATCGACAACACGCAGAGGGGGACCGACTCGATCCCCTACTCACGCATTATGCCTCTCCGA
CCAGCTCAGAGCCCGAACGCTCGTTTCA
Found at i:30048703 original size:26 final size:26
Alignment explanation
Indices: 30048651--30048703 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
30048641 GTTGACTTAG
*
30048651 GCATACGGAGTTCATCCCCAATGTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * * *
30048677 GCATAGGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30048703 G
1 G
30048704 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30049203 original size:356 final size:344
Alignment explanation
Indices: 30048626--30049737 Score: 1047
Period size: 368 Copynumber: 3.1 Consensus size: 344
30048616 GAGAGCCCAC
*
30048626 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATG-TAAGCATAGGGAGTTC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC-ATGTTAAGCATATGGAGTTC
* * *
30048690 CTTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAACA--A-GATCGACAGCACG-CAGG
65 ATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAACAGCAGGATCGACAGCACGTAAGG
* * * * *
30048751 GGGGACCGGGCTGATCCTTGGCTTGCGTATTCTGCCTCTTC-AACCGACTGAGCACCCGCACGA-
130 GGGGA-CGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGAACAG-CTGAGCACCCGCAC-AC
30048814 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG
192 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG
* *
30048879 GTTGTGGCAATAGGACCGGCAGCACGTAGAGGTGGATCGGATCGATCCCCGGCTTACGCATTATG
257 GTTGTGGCAACAGGACCGGCAGCACGTAGAGG-GGA-CGGATCGATCCCCAGCTTACGCATTATG
30048944 CCTCTCAGGTCGGCTCAGTGCCCGA
320 CCTCTCAGGTCGGCTCAGTGCCCGA
* * * * * *
30048969 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-TCCATGTTTGAGCTTATCGAGTTC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCATG-TTAAGCATATGGAGTTC
* *
30049033 ATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGCGACAGTAGGACCAACAGCAGGATCGACAG
65 ATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT--G-C-----GA-CAACAGCAGGATCGACAG
* **
30049098 CACGTAAGGGGGGACAGGG-TCGATCCTCGACTTGTGCATTCTGCCTCTCCGATTAGCTGAGCAC
121 CACGTAAGGGGGGAC-GGGCT-GATCCTCGGCTTGTGCATTCTGCCTCTCCGAACAGCTGAGCAC
* *
30049162 CCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
184 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * *
30049227 GACC-AAGGGTTGTGGCAGCAAGACCGGCAGTGAGATCAGCAGTACGTAAAAGGGGACCGG-GCT
249 GACCGAA-GGTTGTGGCAACAGGACCGGC----AG--CA-C-GTA-G----AGGGGA-CGGATC-
* * * ** *
30049290 GATCCCCAGCTTACGTATTATGCCTCTTCGGCCAACCTTTTTGGTTGGCTGAGCACCCGC
298 GATCCCCAGCTTACGCATTATGCCTC-T----C-A-------GGTCGGCTCAGTGCCCGA
* * * * * *
30049350 ACGCTCGTTTCGTGTGTTAACTTAGGCATATGGAGTTCATCCCCAAT-CTAAGCATATGGAGTTC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC-ATGTTAAGCATATGGAGTTC
* *
30049414 ATTTCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCG---ACAGCAGGATCGACAGCACGTAA-
65 ATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGACAACAGCAGGATCGACAGCACGTAAG
* * * * *
30049474 GGGGGATCGGGCTGATCCTCGGCTTGTACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGC-
129 GGGGGA-CGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGAACAGCTGAGCACCCGCACACT
* *
30049538 CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGG
193 C-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG
* ** * * * *
30049603 GTTGTGGCAGC-GGCACCGGCAGCACACAGAGGGGGACCGAGTCGATCCTCAGTTTGCGCATTAT
257 GTTGTGGCAACAGG-ACCGGCAGCACGTAGA-GGGGACGGA-TCGATCCCCAGCTTACGCATTAT
* * * *
30049667 GCCTCTCTGGGCAGCTTAGTGCCCGA
319 GCCTCTCAGGTCGGCTCAGTGCCCGA
* * *
30049693 ACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
30049738 GTCTAAGATC
Statistics
Matches: 629, Mismatches: 82, Indels: 117
0.76 0.10 0.14
Matches are distributed among these distances:
341 3 0.00
342 3 0.00
343 129 0.21
345 1 0.00
346 1 0.00
351 3 0.00
352 5 0.01
354 1 0.00
355 22 0.03
356 153 0.24
357 3 0.00
359 1 0.00
360 3 0.00
361 1 0.00
362 4 0.01
363 1 0.00
364 5 0.01
365 1 0.00
367 3 0.00
368 157 0.25
369 30 0.05
373 2 0.00
374 1 0.00
378 1 0.00
379 1 0.00
380 1 0.00
381 89 0.14
382 2 0.00
383 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (344 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCATGTTAAGCATATGGAGTTCA
TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAACAGCAGGATCGACAGCACGTAAGGG
GGGACGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGAACAGCTGAGCACCCGCACACTCGT
TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTG
TGGCAACAGGACCGGCAGCACGTAGAGGGGACGGATCGATCCCCAGCTTACGCATTATGCCTCTC
AGGTCGGCTCAGTGCCCGA
Found at i:30049551 original size:368 final size:359
Alignment explanation
Indices: 30048409--30049624 Score: 1178
Period size: 368 Copynumber: 3.3 Consensus size: 359
30048399 CCTAGCTTAC
*
30048409 GCATTCTGCCTCTCCGACCGGTTGAG-AGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 GCATTCTGCCTCTCCGACCGGCTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
** * * *
30048473 GGAGTTCATTCCATGTCTAAGCCCCAATCAGACCGAGGGTTGTGGTAGCAGGACTGGCAGCGAGA
65 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGACCGGCAG-GAGA
* * * * * * *
30048538 TTGACAACA-CAC-AGAGGGGGACCGAGCTGATCCCTGGCTTGCATATTATGCCTCTTCGGCCTA
129 -T--CAGCAGTACGA-AAGGGGACCGGGCTGATCCCCGGCTTACGTATTATGCCTCTTCGGCC-A
* * ** * *
30048601 CCTCTCTAGCCGATTGAGAGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
189 CCT-T-TGGTCGGCTGAGA-CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
30048666 CCCCAATGTAAGCATAGGGAGTTCCTTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAA
251 CCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGCGACAG
* * * * *
30048731 CAAGATCGACAGCACGCAGGGGGGACCGGGCTGATCCTTGGCTTGC
315 CAGGATCGACAGCACGTAAGGGGGA-CGGGCTGATCCTCGGCTTGT
* * * * * *
30048777 GTATTCTGCCTCTTCAACCGACTGAGCACCCGCACGATCGTTTCGTGGGTTGGCTTAGGCATAGG
1 GCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
**
30048842 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAA-GGTTGTGGCAATAGGACCGGC---AG--
66 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACC-AAGGGTTGTGGCAGCAGGACCGGCAGGAGAT
* * *
30048901 CA-C-GTA-G--AGGTGGATC-GGATCGATCCCCGGCTTACGCATTATGCCTC-T----CA----
130 CAGCAGTACGAAAGG-GGACCGGGCT-GATCCCCGGCTTACGTATTATGCCTCTTCGGCCACCTT
* * * * *
30048951 -GGTCGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-TCCAT
193 TGGTCGGCTGAG-ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
* * * * * * *
30049014 GTTTGAGCTTATCGAGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGCGACAGTAGGA
256 ATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTT--G-C-----G-
*
30049079 CCAACAGCAGGATCGACAGCACGTAAGGGGGGACAGGG-TCGATCCTCGACTTGT
311 ---ACAGCAGGATCGACAGCACGTAA-GGGGGAC-GGGCT-GATCCTCGGCTTGT
*** * *
30049133 GCATTCTGCCTCTCCGATTAGCTGAGCACCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
30049198 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAAGACCGGCAGTGAGAT
66 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGACCGGCAG-GAGAT
*
30049263 CAGCAGTACGTAAAAGGGGACCGGGCTGATCCCCAGCTTACGTATTATGCCTCTTCGGCCAACCT
130 CAGCAGTACG--AAAGGGGACCGGGCTGATCCCCGGCTTACGTATTATGCCTCTTCGGCC-ACC-
* * * * *
30049328 TTTTGGTTGGCTGAGCACCCGCACGCTCGTTTCGTGTGTTAACTTAGGCATATGGAGTTCATCCC
191 -TTTGGTCGGCTGAG-ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
*
30049393 CAATCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGACAGCA
254 CAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GATC-GGACCGAGGGTTGCGACAGCA
30049457 GGATCGACAGCACGTAAGGGGGATCGGGCTGATCCTCGGCTTGT
317 GGATCGACAGCACGTAAGGGGGA-CGGGCTGATCCTCGGCTTGT
* * *
30049501 ACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAG
1 GCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAC
* *
30049565 GGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGC-GGCACCGGCAG
65 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGG-ACCGGCAG
30049625 CACACAGAGG
Statistics
Matches: 690, Mismatches: 101, Indels: 114
0.76 0.11 0.13
Matches are distributed among these distances:
342 3 0.00
343 90 0.13
345 1 0.00
346 1 0.00
350 1 0.00
351 2 0.00
355 28 0.04
356 151 0.22
358 2 0.00
359 2 0.00
360 2 0.00
362 2 0.00
363 1 0.00
364 5 0.01
365 1 0.00
367 2 0.00
368 263 0.38
369 34 0.05
373 2 0.00
374 1 0.00
378 1 0.00
379 1 0.00
380 1 0.00
381 90 0.13
382 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (359 bp):
GCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGACCGGCAGGAGATC
AGCAGTACGAAAGGGGACCGGGCTGATCCCCGGCTTACGTATTATGCCTCTTCGGCCACCTTTGG
TCGGCTGAGACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTA
AGCATATGGAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGTAAGGGGGACGGGCTGATCCTCGGCTTGT
Found at i:30049762 original size:159 final size:160
Alignment explanation
Indices: 30049409--30050063 Score: 426
Period size: 159 Copynumber: 4.1 Consensus size: 160
30049399 AAGCATATGG
* * * * **
30049409 AGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTG-CGACAGCAGGATCGACAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTCGACAGTAGGACCGACAGCACACA
* * * *** * * * ** ** ** *
30049473 A-GGGGGATCGGGCTGATCCTC-GGCTTGTACATTCTGCCTCTCCGACCGGTTGAGCACCCGCAC
66 AGGGGGGACCGAGCCGATCC-CAGGCTTACGCATTATACCTCTCTGGGCGACTGAGTGCCCGAAC
* * * *
30049536 GC-CTGTTTCGTGGGTTGGCTTAGGCATAGGG
130 GCTC-ATTTCGTGGGTTGACTTAGGCATACGA
* ** * * * *
30049567 AGTTCATT-CCATGTCTAAG-CCCTAGCCAGACCGAGGGTTGT-GGCAG-CGGCACCGGCAGCAC
1 AGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTCGACAGTAGG-ACCGACAGCAC
* * * * *
30049628 AC-AGAGGGGGACCGAGTCGATCCTCA-GTTTGCGCATTATGCCTCTCTGGGC-AGCTTAGTGCC
63 ACAAG-GGGGGACCGAGCCGATCC-CAGGCTTACGCATTATACCTCTCTGGGCGA-CTGAGTGCC
30049690 CGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA
125 CGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA
* * * *
30049726 AGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTT-TCGACAGTAGGATCGACAGCACCCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTCGACAGTAGGACCGACAGCACACA
* * * * * * *
30049790 AGGGGGGATCGGGCCGGTCCCAGGCTTACGTATTCTACCTCTCTGGTCGACTGAGTGCCCGCACG
66 AGGGGGGACCGAGCCGATCCCAGGCTTACGCATTATACCTCTCTGGGCGACTGAGTGCCCGAACG
* *
30049855 CTCGTTTCGTGGGTTGACTTAGGCATATGA
131 CTCATTTCGTGGGTTGACTTAGGCATACGA
* * ** * * **
30049885 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTG-CAACAACAGGATCGACGGCAC-GT
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTCGACAGTAGGACCGACAGCACACA
* * * * * * * * * * *
30049948 AGGGGGGA-CTAGGCCGGTCCCCA-GCTTGCGGATTCTACCTCTCCGGTC-AGTTGAGAGCCGGC
66 AGGGGGGACCGA-GCCGAT-CCCAGGCTTACGCATTATACCTCTCTGGGCGA-CTGAGTGCCCGA
* * * *
30050010 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
128 ACGCTCATTTCGTGGGTTGACTTAGGCATACGA
30050043 AGTTCATTCCCAGTCTAAGAT
1 AGTTCATTCCCAGTCTAAGAT
30050064 TTTGAGCCAC
Statistics
Matches: 399, Mismatches: 78, Indels: 40
0.77 0.15 0.08
Matches are distributed among these distances:
157 10 0.03
158 139 0.35
159 239 0.60
160 11 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (160 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTCGACAGTAGGACCGACAGCACACA
AGGGGGGACCGAGCCGATCCCAGGCTTACGCATTATACCTCTCTGGGCGACTGAGTGCCCGAACG
CTCATTTCGTGGGTTGACTTAGGCATACGA
Found at i:30050036 original size:317 final size:316
Alignment explanation
Indices: 30049409--30050063 Score: 707
Period size: 317 Copynumber: 2.1 Consensus size: 316
30049399 AAGCATATGG
* **
30049409 AGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAA
1 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACCCAA
* * **
30049474 GGGGGATCGGGCTGATCCTCGGCTTGTACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCC
66 GGGGGATCGGGCCGATCCTCGGCTTGTA-ATTCTACCTCTCCGACCGACTGAGCACCCGCACGCC
* * *
30049539 TGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGG
130 TGTTTCGTGGGTTGACTTAGGCATAGGAAGTTCATTCCATGTCTAAGCACTAGCCAGACCGAGGG
*** * * * * * * *
30049604 TTGTGGCAGCGGCACCGGCAGCACACAGAGGGGGACCGAGTCGATCCTCAGTTTGCGCATTATGC
195 TTGCAACAACGGCACCGACAGCACACAGAGGGGGACAGAGCCGATCCCCAGCTTGCGCATTATAC
* * *
30049669 CTCTCTGGGCAGCTTAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA
260 CTCTCCGGGCAGCTTAGAGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * *
30049726 AGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTTCGACAGTAGGATCGACAGCACCCAA
1 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACCCAA
* * ** **
30049791 GGGGGGATCGGGCCGGTCC-CAGGCTTACGT-ATTCTACCTCTCTGGTCGACTGAGTGCCCGCAC
66 -GGGGGATCGGGCCGATCCTC-GGCTT--GTAATTCTACCTCTCCGACCGACTGAGCACCCGCAC
* * * *
30049854 G-CTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCA-GTCTAAG-ATTGGACCGGAC
127 GCCT-GTTTCGTGGGTTGACTTAGGCATAGGAAGTTCATT-CCATGTCTAAGCACTAG-CCAGAC
* * ** *
30049916 CGAGGGTTGCAACAACAGG-ATCGACGGCACGTAG-GGGGGACTAG-GCCGGTCCCCAGCTTGCG
189 CGAGGGTTGCAACAAC-GGCACCGACAGCACACAGAGGGGGAC-AGAGCCGATCCCCAGCTTGCG
* * * * * * *
30049978 GATTCTACCTCTCCGGTCAG-TTGAGAGCCGGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
252 CATTATACCTCTCCGGGCAGCTT-AGAGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACG
*
30050042 G
316 A
30050043 AGTTCATTCCCAGTCTAAGAT
1 AGTTCATTCCCAGTCTAAGAT
30050064 TTTGAGCCAC
Statistics
Matches: 279, Mismatches: 49, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
316 2 0.01
317 156 0.56
318 114 0.41
319 5 0.02
320 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (316 bp):
AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACCCAA
GGGGGATCGGGCCGATCCTCGGCTTGTAATTCTACCTCTCCGACCGACTGAGCACCCGCACGCCT
GTTTCGTGGGTTGACTTAGGCATAGGAAGTTCATTCCATGTCTAAGCACTAGCCAGACCGAGGGT
TGCAACAACGGCACCGACAGCACACAGAGGGGGACAGAGCCGATCCCCAGCTTGCGCATTATACC
TCTCCGGGCAGCTTAGAGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGA
Found at i:30050767 original size:26 final size:26
Alignment explanation
Indices: 30050731--30050783 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30050721 GTTAACTTAG
30050731 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
30050757 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30050783 G
1 G
30050784 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30056867 original size:26 final size:26
Alignment explanation
Indices: 30056838--30056890 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30056828 GTTGGCTTAG
30056838 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
30056864 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30056890 G
1 G
30056891 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30057062 original size:26 final size:26
Alignment explanation
Indices: 30057032--30057085 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
30057022 GTTGACTTAG
30057032 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30057058 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30057084 GC
1 GC
30057086 TCGAATTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30057516 original size:158 final size:158
Alignment explanation
Indices: 30057105--30057557 Score: 492
Period size: 158 Copynumber: 2.9 Consensus size: 158
30057095 ACCGAGGATA
* * *
30057105 CGGTAGTAGGATTGGA-AGCACGCAAGGTGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCC-C
1 CGGTAGTAGGA-TCGACAGCACGCAAGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGCCTC
** ** * * * *
30057168 TCCAGCCGATTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
65 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA
* *
30057233 TGTCTAAGCCCTAGCCAGACTGAGGGTTG
130 TCTCTAAGACCTAGCCAGACTGAGGGTTG
* * * * * *
30057262 TGGTAGCAGGA-CTGGCAGCATGCAGAGGGGGACCAGGTCGAT-CCTCGGCTTGTGCATTATGCC
1 CGGTAGTAGGATC-GACAGCACGCA-AGGGGGACCGGGTCGATCCCT-GGCTTGTGCATTCTGCC
* * *
30057325 TCT-TCGGCCGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATT
63 TCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
*
30057389 CCCA-CTCTAAGATC-AGACCAGACTGAGGGTTG
127 -CCATCTCTAAGACCTAG-CCAGACTGAGGGTTG
*
30057421 CGGTAGTAGGATCGACAGCACGGC-AGGGGGACTGGGTCGATCCCTGGCTTGTGCATTCTGCCTC
1 CGGTAGTAGGATCGACAGCAC-GCAAGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGCCTC
* * * * *
30057485 TCTGGCCGGCGGAGCGCCCGCACGCTCGTTTCCTTGGTT-AGCTTAGGCATGCGGAGTTCACTCC
65 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCC
*
30057549 ATGTCTAAG
129 ATCTCTAAG
30057558 CATACGGAGT
Statistics
Matches: 243, Mismatches: 39, Indels: 27
0.79 0.13 0.09
Matches are distributed among these distances:
156 1 0.00
157 23 0.09
158 121 0.50
159 92 0.38
160 6 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CGGTAGTAGGATCGACAGCACGCAAGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT
CTCTAAGACCTAGCCAGACTGAGGGTTG
Found at i:30057567 original size:26 final size:26
Alignment explanation
Indices: 30057531--30057583 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30057521 GTTAGCTTAG
*
30057531 GCATGCGGAGTTCACTCC-ATGTCTAA
1 GCATACGGAGTTCACTCCTA-GTCTAA
*
30057557 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCACTCCTAGTCTAA
30057583 G
1 G
30057584 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCTAGTCTAA
Found at i:30058539 original size:159 final size:159
Alignment explanation
Indices: 30058233--30058540 Score: 336
Period size: 159 Copynumber: 1.9 Consensus size: 159
30058223 CCGCACGCTC
* * *
30058233 GTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGT
1 GTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGACCAAACCAAACCGAGGGT
** ** ** * * *
30058298 TGCGGCAGCAGGATTGGTAGCACGGAGGGGGGACCAGGCCGATCCCCGGCTTGCACTTTCTGCGT
66 TGCGGCAGCAGGACCGACAGCACACAGGGGCGACCAGGCCGATCCCCGGCTT-CACTTTATGCCT
*
30058363 CTCCGACCCACTGAGCACCTGCCCACACCT
130 CTCCGACCCACTCAGCACCTGCCCACACCT
* * * * * *
30058393 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATTCTAAGCCCCAGCCAAACCGAGGGT
1 GTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGACCAAACCAAACCGAGGGT
* *
30058457 TGTGGCAGCAGGACCGACAGCACACAGAGGGCGACC-GGGCGATCCCCGGCTT-ACGTATGTATG
66 TGCGGCAGCAGGACCGACAGCACACAG-GGGCGACCAGGCCGATCCCCGGCTTCAC-T-T-TATG
* *
30058520 CCTCT-CGGCCGACTCAGCACC
127 CCTCTCCGACCCACTCAGCACC
30058541 CGTATGCTCA
Statistics
Matches: 121, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.02
158 1 0.01
159 72 0.60
160 46 0.38
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (159 bp):
GTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGACCAAACCAAACCGAGGGT
TGCGGCAGCAGGACCGACAGCACACAGGGGCGACCAGGCCGATCCCCGGCTTCACTTTATGCCTC
TCCGACCCACTCAGCACCTGCCCACACCT
Found at i:30058935 original size:26 final size:26
Alignment explanation
Indices: 30058899--30058949 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30058889 TTGACTTAGG
*
30058899 CATATGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
30058925 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
30058950 GATCGGACGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:30059470 original size:20 final size:20
Alignment explanation
Indices: 30059445--30059496 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
30059435 ATATGGAGTT
30059445 CATTTTTTTTGCTGGTGCCG
1 CATTTTTTTTGCTGGTGCCG
30059465 CATTTTTTTTGCTGGTGCCG
1 CATTTTTTTTGCTGGTGCCG
30059485 CATTTTTTTTGC
1 CATTTTTTTTGC
30059497 CCAGGGCACC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.06, C:0.19, G:0.21, T:0.54
Consensus pattern (20 bp):
CATTTTTTTTGCTGGTGCCG
Found at i:30060868 original size:26 final size:26
Alignment explanation
Indices: 30060830--30060882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30060820 GGCTCAAAAT
*
30060830 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30060856 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30060882 C
1 C
30060883 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30061350 original size:26 final size:26
Alignment explanation
Indices: 30061310--30061360 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30061300 CGGTCTGATC
30061310 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
30061336 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
30061361 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:30062071 original size:158 final size:158
Alignment explanation
Indices: 30061515--30062079 Score: 578
Period size: 158 Copynumber: 3.6 Consensus size: 158
30061505 GCATAGACAT
* * * * * *
30061515 GGAATGAACTCCGCATACCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCGGAG
* * * ** *
30061580 AGGCAGAATGCGCAAGTCGGGGACCGGCTCGGTCCCCCCTACGTGCTATCGATCCTATTGTCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCA
* *
30061645 ACCCTCGGTCTGATCTGATCTT-GACTG
131 ACCCTCGGTCTGGTTTGATCTTAGACTG
** ** * * * *
30061672 GGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCATGCGGGTGCTGAGTCGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCGGAG
* * * ** * * *
30061737 AGGCATAATACGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGGTCCTGCTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTATCGATCCTGCTGCCGC
* * * ** *
30061802 AACCCTCGGTTTGGCTGGGGCTTAGAAAT-
130 AACCCTCGGTCTGGTTTGATCTTAG-ACTG
* * * * * * *
30061831 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCAGGTGCTCAGTGGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCGGAG
* * * * * *
30061896 ACGCAGAAAGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTCCGTGCTACCAATCCTGCTGCCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCA
30061961 ACCCTCGGTCTGGTTTGATCTTAGACTG
131 ACCCTCGGTCTGGTTTGATCTTAGACTG
* * * * *
30061989 GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAG-CTGACCAGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTC-GGCCGGA
* *
30062053 GAGGCAGGATGCGTAAGCCGGGGATCG
65 GAGGCAGAATGCGCAAGCCGGGGATCG
30062080 AACGGGTGGT
Statistics
Matches: 321, Mismatches: 82, Indels: 9
0.78 0.20 0.02
Matches are distributed among these distances:
157 87 0.27
158 147 0.46
159 85 0.26
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGCA
ACCCTCGGTCTGGTTTGATCTTAGACTG
Found at i:30062721 original size:26 final size:26
Alignment explanation
Indices: 30062679--30062731 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30062669 GGCTCAAAAT
*
30062679 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
30062705 CTTAGAC-ATGGAGTGAACTCCGCATG
1 CTTAGACTA-GGAATGAACTCCGCATG
30062731 C
1 C
30062732 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:30062939 original size:158 final size:158
Alignment explanation
Indices: 30062704--30063157 Score: 540
Period size: 158 Copynumber: 2.9 Consensus size: 158
30062694 AACTCCGTAT
* * * * *
30062704 GCTTAGACATGGAGTGAACTCCGCATGCCTAAGCCAACCAAGGAAACGAGCGTGCGGGCGCTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
30062769 CCGGCC-AGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATC
66 CCGGCCGA-AGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAATC
30062833 CTACTACCGCAACCCTCAGTCTGGTCT-GA
130 CTACTACCGCAACCCTCAGTCTGG-CTGGA
* * * * * *
30062862 TCTTAGA-GTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * ** * *
30062926 GCCGGCCGAAGAGGCATAATGCACAAGCC-GAGGATCGACCTGGTCCCCTCTGAATGCTGCCAGT
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCAG-GGATCGACCCGGTCCCCCCTGCGTGCTGTCAAT
* * *
30062990 CCTGCTACCACAACCCTCAGTCTGGCTGGG
129 CCTACTACCGCAACCCTCAGTCTGGCTGGA
* ** *
30063020 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
30063085 TCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCGCCTTGCGTGCT-TCCAATC
66 CCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGT-CAATC
30063149 CTACTACCG
130 CTACTACCG
30063158 TATCCCTCGG
Statistics
Matches: 242, Mismatches: 47, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 235 0.97
159 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAATCC
TACTACCGCAACCCTCAGTCTGGCTGGA
Found at i:30063207 original size:26 final size:26
Alignment explanation
Indices: 30063178--30063231 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
30063168 TCCAATTCGA
30063178 GCTTAGACTGGGAATGAACTCCATAT
1 GCTTAGACTGGGAATGAACTCCATAT
* *
30063204 GCTTAGACTGGGGATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCATAT
30063230 GC
1 GC
30063232 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCATAT
Found at i:30063354 original size:26 final size:26
Alignment explanation
Indices: 30063316--30063368 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30063306 CCGGTCTGAT
30063316 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30063342 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
30063368 C
1 C
30063369 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30070772 original size:158 final size:157
Alignment explanation
Indices: 30070118--30070779 Score: 521
Period size: 158 Copynumber: 4.2 Consensus size: 157
30070108 ATGGCTCAAA
* * * * * *
30070118 ATCTTAGACTGGGAATAAAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTC-GGCTCTC
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-T-TCGGGCACTC
* * * * ** *
30070182 AACCGACCGGAGAGGTAGAATGCGCAAGCTGGGGACCGGCCTAGTCCCCCCTACGTGCCGTCGAT
64 AGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGGTCCCCCCTACGTGCTGTCGAT
* ** * *
30070247 CCTGTTGTTGCAACCCTC-AGTTCGGTCTG
129 CCTGCTGCCGCAACCCTCGA-TCCAGTCTG
* * ** *
30070276 ATCATAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCACTCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CTTCGGGCACTCA
* * * ** * ** *
30070341 GTCGATCGGAGAGGTAGAATATACAAGCCTGGGACCGGCCCGGTCCCCCCTTGGGTGTTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGGTCCCCCC-TACGTGCTGTCGAT
*
30070406 CCTACTGCCGCAACCCTCGATCCAGTCTG
129 CCTGCTGCCGCAACCCTCGATCCAGTCTG
* ** * * * *
30070435 ATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCTATGAAATGAGCGTTCGGGCACTAA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TTCGGGCACTCA
* * * * * * * * * * * *
30070500 GCTGCCCGAAGAGGCATAATGCGCAAGCTGAGGATCGACCCGGTCCCCTCTGCGTGCTG-CCAGT
65 GCCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGGTCCCCCCTACGTGCTGTCGA-T
* * ** *
30070564 GCC-GCTACCACAACCCTCGAT-TTGGCTGG
129 -CCTGCTGCCGCAACCCTCGATCCAGTCT-G
** * * **
30070593 GGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAAC-AGGCTTACAGGTGCT
1 ATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GCTT-CGGGCACT
* * * *
30070656 CAGCCGATCGGAGAGGCAGAATGTACAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGA
63 CAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGGTCCCCCCTACGTGCTGTCGA
*
30070721 TCCTGCTGTCGCAACCCTC-AGTCCAGTCTG
128 TCCTGCTGCCGCAACCCTCGA-TCCAGTCTG
* *
30070751 ATCTTAGACTAGAAATGAACTCCATATGC
1 ATCTTAGACTAGGAATGAACTCCGTATGC
30070780 TTAGATTGGG
Statistics
Matches: 391, Mismatches: 97, Indels: 32
0.75 0.19 0.06
Matches are distributed among these distances:
157 12 0.03
158 247 0.63
159 131 0.34
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTCGATCCAGTCTG
Found at i:30070782 original size:26 final size:26
Alignment explanation
Indices: 30070753--30070805 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30070743 CCAGTCTGAT
30070753 CTTAGACTAGAAATGAACTCCATATG
1 CTTAGACTAGAAATGAACTCCATATG
* * **
30070779 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTAGAAATGAACTCCATATG
30070805 C
1 C
30070806 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCATATG
Found at i:30071606 original size:356 final size:354
Alignment explanation
Indices: 30070505--30071863 Score: 1250
Period size: 368 Copynumber: 3.8 Consensus size: 354
30070495 ACTAAGCTGC
* ** *
30070505 CCGAAGAGGCATAATGCGCAAG-CTGAGGATCGACCCGGTCC-CCTCTG-CGT-GCTGCCAGTGC
1 CCGAAGAGGCATAATACATAAGCCAG-GGATCGACCCGGTCCACCTCTGCCGTCGCTGCCAGT-C
* * ** *
30070566 C-GCTACCACAACCCTCGATTTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCA
64 CTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * **
30070630 ACCCACGAAAC-AGGCTTACAGGTGCTCAGCC-GATCGGAGAGGCAGAATGTACAAGCCGGGGAT
129 ACCCACGAAACGA-GCGTGCGGGTGCTCAGCCAG-TCGAAGAGGCAGAATGCACAAGCCAAGGAT
* *
30070693 CGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTCC-AGTCTGATCTTA
192 CGGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCAGTCCGA-TCTGATCTTA
* * * * *
30070757 GACTAGAAATGAACTCCATATGCTTAGATTGGGGATGAACTCCATATGCCTAAGTTAACACATGA
256 GACTGGGAATGAACTCCATATGCTTACATT-GGGATGAACTCCGTATGCCTAAGTTAACCCATGA
* *
30070822 AATGAGCGTGCGGGTGCTCAGTCGACCGG-AA-AGGTTGG
320 AATGAGCGTG-TGG-GCTC--TC-ACCGGTAAGAGGTCGG
* * * * *
30070860 CCGAAGAGGCATAATACGTAAGCCGGGGATCAACCCGGTCCCCCTTTACGTGCTGCCGATCTCAC
1 CCGAAGAGGCATAATACATAAGCCAGGGATCGACCCGGT---CC---ACCT-CTGCCG---TCGC
* * *
30070925 TGCCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGC
56 TGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * *
30070990 CTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCAGTCGAAGAGGTAGAATGCACAAGTC
121 CTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGTCGAAGAGGCAGAATGCACAAGCC
* * * *
30071055 GAGGATCGACCCTGTCCCCCTTTACATGCTGTCGATCCTGCTGTTGGTCCTACTGCCGCAACCCT
186 AAGGATCGGCCCGGTCCCCC-CTACATGCTGTCGATCCTGC---T-G------T--CGCAACCCT
* * *
30071120 CAGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTCAGACA-TGGAATGAACTCTGTA
238 CAGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCT--TACATTGGGATGAACTCCGTA
* * *
30071184 TGCCTAAGTTAACCCATGAAACGAGCGT-TCGGG----CA-C--T--GA-GCCGA
301 TGCCTAAGTTAACCCATGAAATGAGCGTGT-GGGCTCTCACCGGTAAGAGGTCGG
* * *
30071228 CC-AGAGAGGCATAATGCATAAGCCAGGGATTGACCCGGTCCACCTCTG-CGT-GCTGCCGGTCC
1 CCGA-AGAGGCATAATACATAAGCCAGGGATCGACCCGGTCCACCTCTGCCGTCGCTGCCAGTCC
* *
30071290 TGTTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
65 TGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
30071355 CCCACGAAACGACCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCAAGGATCAG
130 CCCACGAAACGAGCGTGCGGGTGCTCAGCCAGTCGAAGAGGCAGAATGCACAAGCCAAGGATCGG
* * * * * *
30071420 CCCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGTTGCAACCCTC-GATCTGATCCGATCTTAGAC
195 CCCGGTCCCCCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCAG-TCCGATCTGATCTTAGAC
* *
30071484 TGGGAAGGAACTCCATATGCTTACATTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAT
259 TGGGAATGAACTCCATATGCTTACATT-GGGATGAACTCCGTATGCCTAAGTTAACCCATGAAAT
30071549 GAGCGTGTGGGCTCTCAACCGGGTAGAGAGGTCGG
323 GAGCGTGTGGGCTCTC-ACC-GGTA-AGAGGTCGG
** * *
30071584 CCGAAGAATCATAATACATAAGCCAGGGATC-AGCCTGGTCCCCCTCTGTGTGTTGTCAATC-TC
1 CCGAAGAGGCATAATACATAAGCCAGGGATCGA-CCCGGTCCACCTC-------TG-C---CGTC
* * * *
30071647 GCTGCCAGTCTTGCTGCCACAACCCTCGGTCCGACTTGGGCTTAGACATGGAATGAACTCCGTAT
54 GCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * **
30071712 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCT-CTCAACCAGTCGGAGAGGCAGAATGCGTAA
119 GCCTAAGCCAACCCACGAAACGAGCGTGCGGG-TGCTCAGCCAGTCGAAGAGGCAGAATGCACAA
* * * ** *
30071776 GCCAGGGA-CTGGCCCAGTCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCTTC-GATCCGA
183 GCCAAGGATC-GGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCAG-TCCGA
30071839 TCTGATCTTAGACTGGGAATGAACT
246 TCTGATCTTAGACTGGGAATGAACT
30071864 TCGTATGCCT
Statistics
Matches: 826, Mismatches: 107, Indels: 129
0.78 0.10 0.12
Matches are distributed among these distances:
341 3 0.00
342 2 0.00
343 87 0.11
344 1 0.00
345 1 0.00
347 1 0.00
348 1 0.00
349 1 0.00
351 1 0.00
352 2 0.00
355 51 0.06
356 178 0.22
357 2 0.00
358 2 0.00
360 2 0.00
361 3 0.00
362 5 0.01
363 5 0.01
364 2 0.00
365 2 0.00
367 6 0.01
368 348 0.42
369 22 0.03
371 1 0.00
372 2 0.00
373 2 0.00
379 2 0.00
380 2 0.00
381 85 0.10
382 2 0.00
383 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (354 bp):
CCGAAGAGGCATAATACATAAGCCAGGGATCGACCCGGTCCACCTCTGCCGTCGCTGCCAGTCCT
GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGTGCTCAGCCAGTCGAAGAGGCAGAATGCACAAGCCAAGGATCGGC
CCGGTCCCCCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTG
GGAATGAACTCCATATGCTTACATTGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAG
CGTGTGGGCTCTCACCGGTAAGAGGTCGG
Found at i:30072188 original size:158 final size:156
Alignment explanation
Indices: 30071687--30072178 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 156
30071677 CCGACTTGGG
* * *
30071687 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGG-TCTCAGC
* * * * * * * * *
30071752 CAGTCGGAGAGGCAGAATGCGTAAGCCAGGGA-CTGGCCCAGTCCCCCCTGCATGCTGTCGATCC
65 CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GGTCCGGTCCCCCCTACGTGCTGTCGATCC
* * * *
30071816 TGCTACCGCAACCTTCGATCCGATCTGAT
129 TGCTGCCGCAACCTTCGGTCGGTTC-GAT
* * * * *
30071845 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGG-CATTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTC--TCA
* * * * * * *
30071908 GCTGACCGAAGAGGCATAATGCACGAGCAGGGGATCGAGT-CGGTCCCCCTCTACGTGCTGTCGA
63 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCG-GTCCGGTCCCCC-CTACGTGCTGTCGA
* * * **
30071972 TCCCGCTGCCACAACCTTCGGTACGGTTGGGG
126 TCCTGCTGCCGCAACCTTCGGT-CGGTTCGAT
* * * * *
30072004 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAAAAATGGGTGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGT-CTCAGC
*
30072069 CGGCCGGAGAGGAAAAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCCTACGTGCTGTCGATCCT
65 CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCCTACGTGCTGTCGATCCT
*
30072134 GCTGCCGCAACCATT-GGTCTGGTTCAAT
130 GCTGCCGCAACC-TTCGGTC-GGTTCGAT
30072162 CTTAGAC-TGGGAATGAA
1 CTTAGACAT-GGAATGAA
30072179 TCATGTATGC
Statistics
Matches: 266, Mismatches: 54, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 136 0.51
159 121 0.45
160 4 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTCTCAGCC
GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCCTACGTGCTGTCGATCCTG
CTGCCGCAACCTTCGGTCGGTTCGAT
Found at i:30072212 original size:26 final size:26
Alignment explanation
Indices: 30072162--30072214 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30072152 CTGGTTCAAT
*
30072162 CTTAGACTGGGAATGAATCATGTATG
1 CTTAGACTGGGAATGAATCACGTATG
*
30072188 CTTAGACTGGGGATGAACTC-CGTATG
1 CTTAGACTGGGAATGAA-TCACGTATG
30072214 C
1 C
30072215 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATCACGTATG
Found at i:30073791 original size:26 final size:26
Alignment explanation
Indices: 30073762--30073812 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30073752 CGGTCTGATC
*
30073762 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
30073788 TTAGATTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
30073813 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:30074043 original size:501 final size:501
Alignment explanation
Indices: 30073237--30074352 Score: 1248
Period size: 501 Copynumber: 2.2 Consensus size: 501
30073227 TCTGGCTATT
* * * * * *
30073237 GCAACCCTCAGTCCGATTTGATGTTAGACTAGGAATGAACTCTGTATGCG-TAGACATGGAATGA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG-GTTAGA-ATGGGATGA
*
30073301 ACTCCGTATGCCTAAG-CTAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAA
64 ACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAA
* * *
30073365 AATGCAGAAGCTGAGGACCTATCCGATTCCCCCCTATGTGCTATCGATCCTGCTACCACAACCCT
128 AATGCAGAAGCCGAGGACCTATCCGATTCCCCCCTATGTCCTATCGATCCTACTACCACAACCCT
* *
30073430 CGGTCTGATCTGATCTTAGACTGGGAAAGAACCCCGTAAGCCTAAGTCAACCCACGAAACAAGCG
193 CGGTCTGATCCGATCTTAGACTGGGAAAGAACCCCGTAAGCCTAAGCCAACCCACGAAACAAGCG
** * * *
30073495 TGCGGGCGTTGAGCCAATCGAATAGGCATAAGGTGCAAGCCGGGGATCAACCCGGTCCCCCTCTA
258 TGCGGGCACTGAGCCAATCGAAGAGGCATAAGGCGCAAGCCGGGGATCAACCCGGTCCCCCTATA
* * * *
30073560 CCTGATGTCGGTCCCGCTACCATAACCCTAT-GTCTGACTAGGGCTTAGACATGGAATGAACT-C
323 CCTGATGCCGATCCCGCTACCACAACCCT-TGGTCCGACTAGGGCTTAGACATGGAATGAACTAC
* * * **
30073623 CTTACGCCTAAGCCAACCCATGAAAC-G-GGTGTACGAACACTCAGCAGGTCAGAGAGGCAGAAT
387 C-TACGCCTAAGCCAACCCACGAAACAGACGTGT--GAACACTCAACAGACCAGAGAGGCAGAAT
* * *
30073686 GCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGAGCTGCTAATCCTGCTGCC
449 GCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGAGCTGCCAATCCTGCTGCC
* * *
30073739 GCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGATTGGGGATGAA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGAAT-GGGATGAA
* * * * * ** *
30073804 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGTGTTCAGTCGATTGGAGAGGCAGAA
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAAAA
* * * * * *
30073869 TGC-GCAAGCCGGGGACCTA-CTGGA-TCCCCCCTGTGTCCTGTCGATCCTACTGCCGCAACCCT
130 TGCAG-AAGCCGAGGACCTATC-CGATTCCCCCCTATGTCCTATCGATCCTACTACCACAACCCT
** * * ***
30073931 CGGTCTGATCCGATCTTAGACTGGGAATA-AACTTCGTATGCCTAAGCCAACCCATGAATTGA-C
193 CGGTCTGATCCGATCTTAGACTGGGAA-AGAACCCCGTAAGCCTAAGCCAACCCACGAAACAAGC
* * * * *
30073994 AGTTCGGGCACTGCGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTA
257 -GTGCGGGCACTGAGCCAATCGAAGAGGCATAAGGCGCAAGCCGGGGATCAACCCGGTCCCCCTA
* * * * *
30074059 TGCGTGTTGCCGATCCCGTTGCCACAACCCTTGGTCCGACTAGGGCTTAGACATGGAATGAACTA
321 TACCTGATGCCGATCCCGCTACCACAACCCTTGGTCCGACTAGGGCTTAGACATGGAATGAACTA
* **** * *
30074124 CCTATGCCTAAGCCAACCCACGAAACAGACGTGTGGGTGCTCAACCGACCAGAGAGGTAGAATGC
386 CCTACGCCTAAGCCAACCCACGAAACAGACGTGTGAACACTCAACAGACCAGAGAGGCAGAATGC
* * * * * *
30074189 GCAAGCCGTGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCTTGCTGCT
451 GCAAGCCGGGGATCGGCCCGATCCCCCCTGCGAGCTGCCAATCCTGCTGCC
* ** * * * *
30074240 GCAACCCTCGGTCCTGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGAAT-GGGATGAA
* * *
30074305 CTCTGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGAGG-GCTCAGC
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACG-GGCGCTCAGC
30074353 TGGCCGAAAA
Statistics
Matches: 510, Mismatches: 92, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
500 2 0.00
501 374 0.73
502 129 0.25
503 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (501 bp):
GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGGTTAGAATGGGATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAAAAT
GCAGAAGCCGAGGACCTATCCGATTCCCCCCTATGTCCTATCGATCCTACTACCACAACCCTCGG
TCTGATCCGATCTTAGACTGGGAAAGAACCCCGTAAGCCTAAGCCAACCCACGAAACAAGCGTGC
GGGCACTGAGCCAATCGAAGAGGCATAAGGCGCAAGCCGGGGATCAACCCGGTCCCCCTATACCT
GATGCCGATCCCGCTACCACAACCCTTGGTCCGACTAGGGCTTAGACATGGAATGAACTACCTAC
GCCTAAGCCAACCCACGAAACAGACGTGTGAACACTCAACAGACCAGAGAGGCAGAATGCGCAAG
CCGGGGATCGGCCCGATCCCCCCTGCGAGCTGCCAATCCTGCTGCC
Found at i:30075194 original size:26 final size:26
Alignment explanation
Indices: 30075142--30075194 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30075132 TTGGTCCGAT
*
30075142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
30075168 CTTAGATTGGGGATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
30075194 C
1 C
30075195 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:30075484 original size:881 final size:873
Alignment explanation
Indices: 30073662--30075537 Score: 2024
Period size: 881 Copynumber: 2.1 Consensus size: 873
30073652 TGTACGAACA
* *
30073662 CTCAGCAGGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGAGCTG-C
1 CTCAGCA-GTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCC
** ** * * **
30073726 -TAAT-C--CTGCTGCCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
65 ATCCTGCTACTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * ** * * *
30073787 GTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGTGTTCAGT
130 CTTAGAATGGGAACGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAAGCGCTCAAT
* * *
30073852 CGATTGGAGAGGCAGAATGCGCAAGCCGGGGACCTACTGGATCCCCCCTGTGTCCTGTCGATCCT
195 CGATCGGAGAGGCAGAATGCACAAGCCGGGGACCTACTGGATCCCCCCTGCGTCCTGTCGATCCT
30073917 ACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAAC
260 ACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAAC
* * * * * * * *
30073982 CCATGAATTGACAGTTCGGGCACTGCGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAAC
325 CCACGAAATGACAGTACAGACACTGAGCCAGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAAC
* * * * ** *
30074047 CCGGTCCCCCTATGCGTGTTGCCGATCCCGTTGCCACAACCCTTGGTCCGACTAGGGCTTAGACA
390 CCGGTCCACCTATGCGTGCTGCAGATCCCGCTGCCACAACCCTCAGTCCGACTAGGGCATAGACA
* * *
30074112 TGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACAGACGTGTGGGTGCTCAACCGACCAGA
455 CGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACAGACGTGTAGGCGCTCAACCGACCAGA
* * * * * **
30074177 GAGGTAGAATGCGCAAGCCGTGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCTTGCTGCTGC
520 GACGCAGAATGCGCAAGCCGTGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTACAGCCAC
30074242 AACCCTCGGTCCTGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACT
585 AACCCTCGGTCCTGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACT
* * * * * * *
30074307 CTGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGAGGGCTCAGCTGGCCGAAAAGGTCAGCCG
650 CTGCATGCCTAAGTCAACCCACGAAACGAGCATGCGAGAGCTCAGCAGGCAGAAAAGGCCAGCCG
* * * * *
30074372 AAAAGGCATAATACATAAGCCAGGGATTAGCCTGGTCCCCCTCTACGTGCTGCAGATCCCGCTGT
715 AAAAGCCATAATACACAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGCAGATCCCGCTGC
* * * *
30074437 CGGTCCTGCTGCCACAACCCTCAGTCCGACTGAGGGTTAGACATGGAATGAACTCTGTATACCTA
780 CGGTCCTGCTGCCACAACCCTCACTCCGACAGAGGGTTAGACATAGAATGAACTCTGAATACCTA
* * * *
30074502 AGTCAACCCATGAAACGAGCGTGTAGGTG
845 AGGCAACCCACGAAACGAGCGTGCAGGCG
* * * * * * * * * *
30074531 CTCAGCCGATCGGA-AGGGCAGAATGCACAAGCCGAGGATCGATCTGGTCCCCACGGCGTGTTGT
1 CTCAGCAG-TCAGAGA-GGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTG-
* *
30074595 CGATCCTGCTACTGGTCTTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAAC
63 CCATCCTGCTACT-G-C-TGC---CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAC
* ** *
30074660 TCCATATGCTTAGACAT-GGAACGAACTCCGTATGCCTCAG-CTAACCCATGAAACGAGTGTGCA
122 TCCATATGCTTAGA-ATGGGAACGAACTCCGTATGCCTAAGTC-AACCCACAAAACGAGCGTGCA
* *
30074723 AGCGCTCAATCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTAC-GG-TCCCCCCTGCGT
185 AGCGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCGGGGA-C-CTACTGGATCCCCCCTGCGT
* * * * * * *
30074786 GCTGTCGATCCTACTGTCGTAACTCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
248 CCTGTCGATCCTACTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATAAACTTCGTAT
* **
30074851 GCCTAAGTCAACCCACGAAATGAGC-GTACAGATGCTGAGCCAGTCGGAGAGGCATAATGAGCAA
313 GCCTAAGCCAACCCACGAAATGA-CAGTACAGACACTGAGCCAGTCGGAGAGGCATAATGAGCAA
** * ** * * *
30074915 GCCGAGGATCGGCTCGGTCCAGTTCTGCGTGCTGTCAG-TCCCGCTGCCACAACCCTCAGTTCGG
377 GCCGAGGATCAACCCGGTCCACCTATGCGTGCTG-CAGATCCCGCTGCCACAACCCTCAGTCCGA
* * * * * * *
30074979 TTGGGGCATAGACACGGAATGAACTCCCTCTGCCTAAGCCAACCCATGAAACGGGCGTAG-AGGC
441 CTAGGGCATAGACACGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACAGACGT-GTAGGC
* * * * * *
30075043 GCTCCACCTATCGGAGACGCAGAATGCGTAAGCCG-GTGATCGGCTCGGT-CCCCCTGCGTGCTG
505 GCTCAACCGACCAGAGACGCAGAATGCGCAAGCCGTG-GATCGGCTCGATCCCCCCTGCGTGCTG
* * * *
30075106 CCGATCCTACAGCCACGACCCTCGGT-TTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
569 CCGATCCTACAGCCACAACCCTCGGTCCT-GTCCAATCTTACACTGGGAATGAACTCCGTATGCT
* * *
30075170 TAGATTGGGGATGAACT-TCGCATGCCTAAGTCAACCCACGGAACGAGCATGCG-GTAGCTCAGC
633 TAGACTAGGGATGAACTCT-GCATGCCTAAGTCAACCCACGAAACGAGCATGCGAG-AGCTCAG-
* ** * * * * *
30075233 CAGTCAG-AGGGGCCGGTCGGAGAGCCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTA
695 CAGGCAGAAAAGGCCAGCCGAAAAGCCATAATACACAAGCCAGGGATCAGCCCGGTCCCCCTCTA
* ** * *
30075297 TGTGCTGCCTATCCCGCTGCCGGTCCTGCTGCTATAACCCTCACTCCGACAG-GGGATTAGACAT
760 CGTGCTGCAGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCACTCCGACAGAGGG-TTAGACAT
* *
30075361 AGAATGAACT-TCGAATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCG
824 AGAATGAACTCT-GAATACCTAAGGCAACCCACGAAACGAGCGTGCAGGCG
30075411 CTCAGTCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCTCCTGCGTGCTGC
1 CTCAG-CAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCC-CCTGCGTGCTG-
* ** * *
30075476 CCATCCTGCTA------CCACAACCCTCAGTCCGGTCTAATCTTAGGCTGGGAATGAACTCCGTA
63 CCATCCTGCTACTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATA
30075535 TGC
128 TGC
30075538 CTAAGTCAAC
Statistics
Matches: 819, Mismatches: 157, Indels: 62
0.79 0.15 0.06
Matches are distributed among these distances:
868 2 0.00
869 91 0.11
872 3 0.00
873 1 0.00
875 2 0.00
876 1 0.00
877 1 0.00
878 3 0.00
879 7 0.01
880 297 0.36
881 400 0.49
882 8 0.01
883 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (873 bp):
CTCAGCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCA
TCCTGCTACTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
TTAGAATGGGAACGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAAGCGCTCAATC
GATCGGAGAGGCAGAATGCACAAGCCGGGGACCTACTGGATCCCCCCTGCGTCCTGTCGATCCTA
CTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCAACC
CACGAAATGACAGTACAGACACTGAGCCAGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAACC
CGGTCCACCTATGCGTGCTGCAGATCCCGCTGCCACAACCCTCAGTCCGACTAGGGCATAGACAC
GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACAGACGTGTAGGCGCTCAACCGACCAGAG
ACGCAGAATGCGCAAGCCGTGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTACAGCCACA
ACCCTCGGTCCTGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTC
TGCATGCCTAAGTCAACCCACGAAACGAGCATGCGAGAGCTCAGCAGGCAGAAAAGGCCAGCCGA
AAAGCCATAATACACAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGCAGATCCCGCTGCC
GGTCCTGCTGCCACAACCCTCACTCCGACAGAGGGTTAGACATAGAATGAACTCTGAATACCTAA
GGCAACCCACGAAACGAGCGTGCAGGCG
Found at i:30075768 original size:158 final size:160
Alignment explanation
Indices: 30075332--30075753 Score: 480
Period size: 159 Copynumber: 2.7 Consensus size: 160
30075322 CTGCTGCTAT
* * * * * *
30075332 AACCCTCACTCCGA-CAGGGGATTAGACAT-AGAATGAACTTCGAATGCCTAAGGCAACCCACGA
1 AACCCTCAGTCCGACCTGGGGCTTAGACATGA-AATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * *
30075395 AACGAGCGTGCGGGCGCTCAGTCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTC
65 AACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATC
*
30075460 CCCTCCTGCGTGCTGCCCATCCTGCTACCAC
130 CCCTCCTACGTGCTGCCCATCCTGCTACCAC
** *** * * *
30075491 AACCCTCAGTCCGGTCT-AATCTTAGGC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 AACCCTCAGTCCGACCTGGGGCTTAGACAT-GAAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * *
30075554 AACGAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATC
65 AACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATC
* *
30075619 CCC-CTCTACGTGCTGTCGATCCT-CTACCAC
130 CCCTC-CTACGTGCTGCCCATCCTGCTACCAC
* * *
30075649 AACCCTCGGTCC-ACCTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCAGTCCGACCTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * *
30075713 ACGGGTGTGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGC
66 ACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGC
30075754 ATAAGCAGGG
Statistics
Matches: 214, Mismatches: 43, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 90 0.42
159 121 0.57
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (160 bp):
AACCCTCAGTCCGACCTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCC
CCTCCTACGTGCTGCCCATCCTGCTACCAC
Found at i:30075843 original size:26 final size:26
Alignment explanation
Indices: 30075814--30075866 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30075804 CCGGTCCGAT
*
30075814 CTTAGACTAGGAATGAACTCGATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
30075840 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
30075866 C
1 C
30075867 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30076574 original size:26 final size:26
Alignment explanation
Indices: 30076536--30076588 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30076526 GGCTCAAACT
30076536 CTTAGACTGGGAATGAAC-TCCATATG
1 CTTAGACTGGGAATGAACTTCC-TATG
30076562 CTTAGACAT-GGAATGAACTTCCTATG
1 CTTAGAC-TGGGAATGAACTTCCTATG
30076588 C
1 C
30076589 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCCTATG
Found at i:30077958 original size:159 final size:158
Alignment explanation
Indices: 30077529--30077959 Score: 415
Period size: 159 Copynumber: 2.7 Consensus size: 158
30077519 AACTCCATAT
* * * *
30077529 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCA-AAAACGAGCGTGTGGGCGCTCAG
* * * * * *
30077594 TCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGACGT-GGTCACCC-CTACGTGTTGTCGAT
65 CCGGCTGGAGAGGCAAAATGCACAAGCCGGGGATCGGC-TCGGTCCCCCTCTACATGCTGTCGAT
* ** * *
30077657 CCTGCTGTCGTAACCCTCGGTCCGGTTCGA
129 CCTGCTGCCACAACCCTCGATCCGATTCGA
* * * *
30077687 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCAT-TCGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCAA-AAACGAGCGTGT-GGGCGCTC
*** * * *
30077750 AGCCAATTGGAGAGGCATAATGCACAAGCCGGGGATCAGC-CTGGTCCCCCTCTGCATGCTGTCG
63 AGCCGGCTGGAGAGGCAAAATGCACAAGCCGGGGATCGGCTC-GGTCCCCCTCTACATGCTGTCG
* * *
30077814 GT-CTCGCTGCCACAACCCTCGATCCGATTGGG
127 ATCCT-GCTGCCACAACCCTCGATCCGATTCGA
* * * * *
30077846 GCTTAGACATGGAATGAAATCCCTATGCCTAAGTCTACCCACAAAACGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCA-AAAACGAGCGTGTGGGCGCTCAG
* ** *
30077911 CCGGCTGGAGAGGCAAAATGCATAAGCTAGGGATCGGCTCGGGCCCCCT
65 CCGGCTGGAGAGGCAAAATGCACAAGCCGGGGATCGGCTCGGTCCCCCT
30077960 GCGTGCTGCC
Statistics
Matches: 217, Mismatches: 45, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 93 0.43
159 119 0.55
160 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAAAAACGAGCGTGTGGGCGCTCAGC
CGGCTGGAGAGGCAAAATGCACAAGCCGGGGATCGGCTCGGTCCCCCTCTACATGCTGTCGATCC
TGCTGCCACAACCCTCGATCCGATTCGA
Found at i:30078661 original size:159 final size:155
Alignment explanation
Indices: 30078153--30078753 Score: 633
Period size: 159 Copynumber: 3.8 Consensus size: 155
30078143 GATCCGCTGT
**
30078153 CAGTCCTGCTGCCACAACCCTCGG-TCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
1 CAGTCCTGCTGCCACAACCCTCGGTTCTGACTGGGGCTTAGACATGGAATGAACTCC-TATGCCT
* * *** * * *
30078217 AAGGCAACCCACGAAACGAGCGTACGGGTGCTCAGCCTACCGAAGAGGTAGAATGTACAAGCCTG
65 AA-GCAA-CCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCTG
* *
30078282 GGATCGACCCGGTCCCCTCTACGTGCTAC
128 GGATCGGCCC-GTCCCCTCTGCGTGCTAC
* ** * ** *
30078311 CAATCCTGCTGCCGTAACCCTC-GTTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCTGTATGC
1 CAGTCCTGCTGCCACAACCCTCGGTTCT-GACTGGGGCTTAGACAT-GGAATGAACTC-CTATGC
* *
30078373 CTAAGTCAAGCCACGAAACGAGCGTACAGGCGCTGAGCCGGTCGGAGAGGCATAATGCACAAGCC
63 CTAAG-CAA-CCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCC
*
30078438 TCGGGATCGGCCCGATCCCCCTCTGCGTGCTGC
126 T-GGGATCGGCCCG-T-CCCCTCTGCGTGCTAC
*
30078471 CAGTCCTGCTGCCACAACCCTCGG-TCTGACTGGGGCTTAGATATGGAATGAACTCACTATGCCT
1 CAGTCCTGCTGCCACAACCCTCGGTTCTGACTGGGGCTTAGACATGGAATGAACTC-CTATGCCT
* * * *
30078535 AAGCCAACCTATGAAACGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CTG
65 AAG-CAACC-ACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCT-
*
30078599 GGGATTGGCCCAGTCCTCCTCTGCGTGCTAC
127 GGGATCGGCCC-GTCC-CCTCTGCGTGCTAC
* * * *
30078630 CGGTCCCGTTGCCACAACCGTCGGTTC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 CAGTCCTGCTGCCACAACCCTCGGTTCTGACTGGGGCTTAGACATGGAATGAACT-CCTATGCCT
* * * *
30078694 AAGCTACCAAACGAAACGAGTGTACAGGCGCTCAGCCGGTCGGAAAGGCA-AATGCGCAAG
65 AAGCAACC--ACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAG
30078754 TCGAGGATCG
Statistics
Matches: 372, Mismatches: 54, Indels: 34
0.81 0.12 0.07
Matches are distributed among these distances:
157 3 0.01
158 115 0.31
159 136 0.37
160 116 0.31
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (155 bp):
CAGTCCTGCTGCCACAACCCTCGGTTCTGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTA
AGCAACCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCTGGGA
TCGGCCCGTCCCCTCTGCGTGCTAC
Found at i:30079504 original size:26 final size:26
Alignment explanation
Indices: 30079467--30079526 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
30079457 CCTTGGTCCG
30079467 ATCCG-ATG-TTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
* *
30079491 CTCCGTATGCTTAGACTGGGGATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
30079517 ATCCATATGC
1 ATCCGTATGC
30079527 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:30081066 original size:26 final size:26
Alignment explanation
Indices: 30081030--30081082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30081020 CCGATCTGAT
* *
30081030 CTTAGATTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30081056 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30081082 C
1 C
30081083 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30082815 original size:26 final size:26
Alignment explanation
Indices: 30082775--30082825 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30082765 CGGTTAGATC
* *
30082775 TTAGATTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
30082801 TTAGACTGGGTATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
30082826 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:30083011 original size:26 final size:26
Alignment explanation
Indices: 30082982--30083034 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30082972 CCGATCTGAT
30082982 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30083008 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30083034 C
1 C
30083035 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30083263 original size:158 final size:156
Alignment explanation
Indices: 30083008--30083507 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 156
30082998 ACTCCGTATG
* * *
30083008 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATTCGGGCACTC-AC
* * * *
30083073 CGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCATGCTGTCGATCCT
65 CGG-TCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCT
* *
30083138 GCTGCTGCAACCCTTGATCCGATCT-GAT
129 GCTGCCGCAACCCTTGATCTG-TCTAGAT
* * *
30083166 CTTAGAC-TGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATTCGGGCACTCA-
* * * * * *
30083230 CCGGTTCGAGAGGCATAATGCGCAAGCTGGGGATCAGCCTGGTCCCTCTCTCCGTGCTGTCGGT-
64 CCGG-TCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCC-CCCTACGTGCTGTCGATC
* * * **
30083294 CTCGCTGCCACAACCCTTGATCTGGCTGGGG
127 CT-GCTGCCGCAACCCTTGATCTGTCTAGAT
* * *
30083325 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCATGT-GGGCACTCAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAT-TCGGGCACTCAC
* * * *
30083389 CCGCCGGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGAG-CCCCCCTACGTGCTGTCGATCC
65 CGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTG-GTCCCCCCTACGTGCTGTCGATCC
* *
30083453 TGCTGCCGTAACCCTTGGTCTGGT-TAGAT
128 TGCTGCCGCAACCCTTGATCT-GTCTAGAT
*
30083482 CTTAGA-TTGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30083508 GTTAGACTGG
Statistics
Matches: 283, Mismatches: 47, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
156 1 0.00
157 58 0.20
158 136 0.48
159 86 0.30
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATTCGGGCACTCACC
GGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGC
TGCCGCAACCCTTGATCTGTCTAGAT
Found at i:30083523 original size:26 final size:26
Alignment explanation
Indices: 30083483--30083533 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30083473 TGGTTAGATC
*
30083483 TTAGATTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
30083509 TTAGACTGGGTATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
30083534 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:30083729 original size:26 final size:26
Alignment explanation
Indices: 30083691--30083743 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30083681 CCAATCTGAT
30083691 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30083717 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30083743 C
1 C
30083744 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30083814 original size:709 final size:707
Alignment explanation
Indices: 30082477--30084256 Score: 2454
Period size: 709 Copynumber: 2.5 Consensus size: 707
30082467 GAATGAATTT
* * * * * * * *
30082477 CGTATGACTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGT
1 CGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCACTGAGCCGATC-GAGAGGCATAATGC
* * * * * * *
30082542 GCAAG-TCAGGGATC-GACCTGGTCCC-CTTTTGCTTGCTATTGGTCCCACTGCCACAACCCTCG
65 GCAAGCT-GGGGATCAG-CCTGGTCCCTC-TCTCCGTGCTGTCGGTCCCGCTGCCACAACCCTCG
* * *
30082604 GTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAAGGCATG
127 GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCATG
** * * *
30082669 CGGGCACTCAGTTGGTCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGAGCCCCCATACGT
192 CGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCC-GAGATCGGCCCGAGCCCCCCTACGT
*
30082734 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTTAGATCTTAGATTGGGAATGAACTCTGTAT
256 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTTAGATCTTAGATTGGGAATGAACTCCGTAT
**
30082799 GGTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAAGCGCTCAA
321 GGTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCAAGCGCTCAA
* * *
30082864 CCGGCCAGAGAGGTTGACCGAAGAGACGGAATGCGCAAGTCGAGGATCGAACCGGTCCCCCTTAC
386 CCGGCCAGAGAGGCTGACCGAAGAGACAGAATGCGCAAGTCGAGGATCGAACCAGTCCCCCTTAC
* * *
30082929 GTGCTGCCGATCCTGCTACTGATCTACTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGA
451 GTGCTACCGATCCTGCTACTGATCTACTGCCACAACCCTCGATCCAATCTGATCTTAGACTGGGA
* *
30082994 ATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCG
516 ATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCG
* *
30083059 TGCGGGCGCTCAACCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC-CTGGTCCCCCCTG
581 TGCGGGCGCTCAACCGGCTGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTC-GATCCCCCCTG
*
30083123 CATGCTGTCGATCCTGCTGCTGCAACCCTT-GATCCGATCTGATCTTAGACTGGGAAAGAACTC
645 CATGCTGTCGATCCTGCTGCGGCAA-CCTTCGATCCGATCTGATCTTAGACTGGGAAAGAACTC
*
30083186 CGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCACTGAGCCGGTTCGAGAGGCATAATGC
1 CGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCACTGAGCC-GATCGAGAGGCATAATGC
* * *
30083251 GCAAGCTGGGGATCAGCCTGGTCCCTCTCTCCGTGCTGTCGGTCTCGCTGCCACAACCCTTGATC
65 GCAAGCTGGGGATCAGCCTGGTCCCTCTCTCCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTC
* *
30083316 TGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCATGTGG
130 CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCATGCGG
*
30083381 GCACTCA-CCCGCCGGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGAGCCCCCCTACGTGCT
195 GCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCC-GAGATCGGCCCGAGCCCCCCTACGTGCT
* * *
30083445 GTCGATCCTGCTGCCGTAACCCTTGGTCTGGTTAGATCTTAGATTGGGAATGAACTCCGTATGGT
259 GTCGATCCTGCTGCCGCAACCCTCGGTCCGGTTAGATCTTAGATTGGGAATGAACTCCGTATGGT
* *
30083510 TAGACTGGGTATGAACTTCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCAGGCGCTCAACCG
324 TAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCAAGCGCTCAACCG
* * * * * ** *
30083575 GTCGGAGAGGCTGACCGAAGAGGCAGAATGCGCAAG-CTGGGGATTGGCCCAGTCCCTCC-TATG
389 GCCAGAGAGGCTGACCGAAGAGACAGAATGCGCAAGTC-GAGGATCGAACCAGTCCC-CCTTACG
* **
30083638 TGCTACCGATCCTGCTACTGGTCCTACTGCCGTAACCCTC-ATCCCAATCTGATCTTAGACTGGG
452 TGCTACCGATCCTGCTACTGAT-CTACTGCCACAACCCTCGAT-CCAATCTGATCTTAGACTGGG
30083702 AATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGC
515 AATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGC
*
30083767 GTGCGGGCGCTCAACCGGCTGGGGAGGCAAAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTG
580 GTGCGGGCGCTCAACCGGCTGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTG
* * *
30083832 CATGCTGTCGATCCTGTTGCGGCAACCTTCGGTCTGATCTGATCTTAGACTGGGAAAGAACTC
645 CATGCTGTCGATCCTGCTGCGGCAACCTTCGATCCGATCTGATCTTAGACTGGGAAAGAACTC
* * ** * *
30083895 CGTATGCCTAAGTCAACCCACGAAACGAGCATTCAGGCACTGAATCAATCGAAGAGGCGTAATGC
1 CGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCACTGAGCCGATCG-AGAGGCATAATGC
* * * * **
30083960 GTAAGCTGGGGATCAACTTGGTCCCTCTCTCCGTACTGTCAATCCCGCTGCCACAACCCTCGGTC
65 GCAAGCTGGGGATCAGCCTGGTCCCTCTCTCCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTC
* * *
30084025 CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTGAGCCAACCCAC-AAAATGGGCGTGCG
130 CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAA-GGGCATGCG
* * * ** *
30084089 GGCGCTCAGCCGGCCTGAGAGGTAGAATGCATAAGTCACG-GATCGG-CC-AGTCCCCCCTGCGT
194 GGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAG-C-CGAGATCGGCCCGAG-CCCCCCTACGT
* ** * * *
30084151 GCTATCGATCCTGCTATCGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTTCGTA
256 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGT-TAGATCTTAGATTGGGAATGAACTCCGTA
* *
30084215 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
320 TGGTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCA
30084257 TGAAACGAGC
Statistics
Matches: 949, Mismatches: 105, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
707 1 0.00
708 253 0.27
709 657 0.69
710 35 0.04
711 2 0.00
712 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (707 bp):
CGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCACTGAGCCGATCGAGAGGCATAATGCG
CAAGCTGGGGATCAGCCTGGTCCCTCTCTCCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCC
GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGCATGCGGG
CACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGATCGGCCCGAGCCCCCCTACGTGCTGT
CGATCCTGCTGCCGCAACCCTCGGTCCGGTTAGATCTTAGATTGGGAATGAACTCCGTATGGTTA
GACTGGGTATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCAAGCGCTCAACCGGC
CAGAGAGGCTGACCGAAGAGACAGAATGCGCAAGTCGAGGATCGAACCAGTCCCCCTTACGTGCT
ACCGATCCTGCTACTGATCTACTGCCACAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAA
CTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGG
GCGCTCAACCGGCTGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTGCATGCT
GTCGATCCTGCTGCGGCAACCTTCGATCCGATCTGATCTTAGACTGGGAAAGAACTC
Found at i:30084227 original size:26 final size:26
Alignment explanation
Indices: 30084191--30084243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30084181 CCGATCTGAT
*
30084191 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30084217 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30084243 C
1 C
30084244 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30085816 original size:158 final size:160
Alignment explanation
Indices: 30085463--30085816 Score: 376
Period size: 159 Copynumber: 2.2 Consensus size: 160
30085453 TGTGTACTAT
* * *
30085463 GGCTCAAACTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATGCG
1 GGCTCCAA-TCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCG
* * * * * **
30085528 GGCCCTCAGCCAGCCGGAGCGGTAGAATGCACAAGTCGGGGGTCGACCTGGTCCCCCTCTACGTG
65 GGCACTCAGCCAACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCTCTACGTG
* * *
30085593 CTGCTGGTCCCACTGCCACAACCCTCGATCC
130 CTGCCGATCCCACTACCACAACCCTCGATCC
**** * * * * * *
30085624 GGCTGGGGT-TTAGACAT-GGAATGAACTCCCTATGCCTATGCCAACCTATAAAACGGGCGTGCG
1 GGCTCCAATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCG
* * * *
30085687 GGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGGCCCAGTCTCCC-CTGCGT
65 GGCACTCAGCCAACCGGAGAGGCAGAATGCACAAGTC-GGGGATCGACCCAGTCCCCCTCTACGT
* * *
30085750 GCTGCCGATCCTACTACCGCAACCCTCGGTCC
129 GCTGCCGATCCCACTACCACAACCCTCGATCC
30085782 GG-TCCAATCTTAGACTGGGAATGAACTCCATATGC
1 GGCTCCAATCTTAGACTGGGAATGAACTCCATATGC
30085817 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 33, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 57 0.37
159 90 0.58
160 2 0.01
161 4 0.03
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (160 bp):
GGCTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCGG
GCACTCAGCCAACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCTCTACGTGC
TGCCGATCCCACTACCACAACCCTCGATCC
Found at i:30087612 original size:26 final size:26
Alignment explanation
Indices: 30087583--30087635 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30087573 GACTCAAACT
30087583 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
30087609 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
30087635 C
1 C
30087636 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30088077 original size:159 final size:159
Alignment explanation
Indices: 30087652--30088167 Score: 453
Period size: 158 Copynumber: 3.3 Consensus size: 159
30087642 CAACCCACGA
* * * * *
30087652 AATGAGCAAGCCGGGAATCGGCCCG-GTCCCCTCTGTGTGCTGTC-GACCTCGCTGCCACAACCC
1 AATGCGCAAGCCGGGGATCGGCCCGAGTCCCCTCTGAGTGCTGTCGGTCC-CGCTGCCAGAACCC
* *
30087715 TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGC
65 TCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGC
* *
30087780 GTACGAGCACTCAATCGGCCGAAGAGGCAG
130 GTACGAGCACTCAACCAGCCGAAGAGGCAG
* * * * * * *
30087810 AATGCGCAAGCCGAGGATCGGTCGGA-TCCCCTCT-ACGTGCTATCGATCCTGCTGTC-GCAACC
1 AATGCGCAAGCCGGGGATCGGCCCGAGTCCCCTCTGA-GTGCTGTCGGTCCCGCTGCCAG-AACC
* * ** * * * * *
30087872 CTCGATCCGGTCT-GATCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACTAAACG
64 CTCGGTCCGAT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
** * *
30087935 AGCAGT-C-AGGTGCT-AAGCCAGTCGAAGAGGCAT
127 AGC-GTACGA-GCACTCAA-CCAGCCGAAGAGGCAG
* *
30087968 AATGCGCAAGCCGGGGATCGGCCCGAGCCCCCTCTGAGTGCTGTCGGTCCCACTGCCAGAACCCT
1 AATGCGCAAGCCGGGGATCGGCCCGAGTCCCCTCTGAGTGCTGTCGGTCCCGCTGCCAGAACCCT
* * * * *
30088033 CGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACGCACGGAACGGGCA
66 CGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCG
* ** *
30088098 TATGAGTGCTCATCCAGCC-AGAGAGGCAG
131 TACGAGCACTCAACCAGCCGA-AGAGGCAG
* * * * * *
30088127 AATGCGTAAGTCGAGGATCGGCTCG-GTCCCCCCTGCGTGCT
1 AATGCGCAAGCCGGGGATCGGCCCGAGTCCCCTCTGAGTGCT
30088168 ACCGATCCTG
Statistics
Matches: 277, Mismatches: 63, Indels: 36
0.74 0.17 0.10
Matches are distributed among these distances:
157 4 0.01
158 150 0.54
159 118 0.43
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
AATGCGCAAGCCGGGGATCGGCCCGAGTCCCCTCTGAGTGCTGTCGGTCCCGCTGCCAGAACCCT
CGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCG
TACGAGCACTCAACCAGCCGAAGAGGCAG
Found at i:30088698 original size:157 final size:159
Alignment explanation
Indices: 30088319--30088698 Score: 358
Period size: 159 Copynumber: 2.4 Consensus size: 159
30088309 GGCCGAAGAG
* * *
30088319 GTCGATCTTGCTGCCGCAAACCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCC
1 GTCGATCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * ** * * * * **
30088384 TAAGTCAACGCATGAAATGAGCATTCAGGTGCTGAGCCAATCGGAGAGGCATAATGTGCAAGCCA
66 TAAGCCAACCCATGAAAAGAGCATGCAGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGCCA
30088449 AGGATCAGCCCGGTCCCCCTCTGAGTGCT
131 AGGATCAGCCCGGTCCCCCTCTGAGTGCT
** * * * * * * ** *
30088478 ACCGATCCCGTTGCCACAACCCT-TGTTCTG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTAT
1 GTCGATCCTGCTGCCACAACCCTCAG-TCCGATC-CGATCTTAGAC-TGGGAATGAACTCCGTAT
* ** *
30088540 GCCTAAGCCAACCCATGAAACAG-GCATGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCATAA
63 GCCTAAGCCAACCCATGAAA-AGAGCATGCAGGCACTCAGCCAACCAGAGAGGCAGAATGCACAA
*** * *
30088604 GCTGGGGATCGGCCC-GTCCCCC-CTGCGTGCT
127 GCCAAGGATCAGCCCGGTCCCCCTCTGAGTGCT
*
30088635 GTCGATCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAAGTCCGTATGC
1 GTCGATCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
30088699 TTAGACTTAG
Statistics
Matches: 167, Mismatches: 47, Indels: 16
0.73 0.20 0.07
Matches are distributed among these distances:
156 1 0.01
157 54 0.32
158 11 0.07
159 99 0.59
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GTCGATCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCCATGAAAAGAGCATGCAGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGCCA
AGGATCAGCCCGGTCCCCCTCTGAGTGCT
Found at i:30089485 original size:159 final size:158
Alignment explanation
Indices: 30089057--30089503 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 158
30089047 AACTCCGTAT
* ** * ** * *
30089057 GCTTAGACATTGAATGAACGCCGTATGCCAAAGCCAACCCACGAAATAAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
30089122 CCGACC-GAAGAGGCAGAATGAGCAAGCCAAGGACCGACCTGGTCCCCCCTACGTGCTGTCGATC
66 CCGACCGGAA-AGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCCACGTGCTGCCGATC
* ** **
30089186 CTGCTGCTGCAACCCTCGGTCTGGTCTGA
130 CCGCTGCCACAACCCTCGGTCTAATCTGA
* * * * *
30089215 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
30089279 GCCGACCGGAGAGGCATAATGCACAAGCCGAGGATCGGCTCGATCCCCCTCCGCGTGCTGCCGAT
65 GCCGACCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CCACGTGCTGCCGAT
*
30089344 CCCGCTGCCACAACCCTCGGT-TCAAT-TGGG
129 CCCGCTGCCACAACCCTCGGTCT-AATCT-GA
* *
30089374 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
30089439 CCGACCGGAAAGGAAGAATGCGCATGCTGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCC
66 CCGACCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCCACGTGCTGCCGATCC
30089504 TGCTACTGGT
Statistics
Matches: 230, Mismatches: 53, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 100 0.43
159 128 0.56
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCCACGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCTAATCTGA
Found at i:30089858 original size:175 final size:175
Alignment explanation
Indices: 30089544--30089868 Score: 420
Period size: 175 Copynumber: 1.9 Consensus size: 175
30089534 TTCGATCTGA
* * * *
30089544 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGTAATGAACTTCGTATGCCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCGTATGATTAGACATGGAATAAACTTCGTAAGCCTAAGCCAACC
** * ** * *
30089609 CATGAAACGAGTGTGCGGGAGCTTAGTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCT
66 CACAAAACAAACGTGCGGGAGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCC
* * *
30089674 TGGTCCCCCTCTGCGTGCTGTCGATCTTGTTGTCATGGTTCAAAC
131 CGATCCCCCTCTGCATGCTGTCGATCTTGTTGTCATGGTTCAAAC
* *
30089719 TCTTAGACTGGGAATGAACTCTGTATGATTAGACATGGAATAAACTTCGTAAGCCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCGTATGATTAGACATGGAATAAACTTCGTAAGCCTAAGCCAACC
* * * * **
30089784 CACAAAACAAACGTGCGAGTA-CTCAG-CAGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATTGG
66 CACAAAACAAACGTGCG-GGAGCTCAGTC-GGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGG
30089847 CCCGATCCCCCTCTGCATGCTG
129 CCCGATCCCCCTCTGCATGCTG
30089869 CTGGTCCCCC
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
174 1 0.01
175 123 0.98
176 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (175 bp):
TCTTAGACTAGGAATGAACTCCGTATGATTAGACATGGAATAAACTTCGTAAGCCTAAGCCAACC
CACAAAACAAACGTGCGGGAGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGGCC
CGATCCCCCTCTGCATGCTGTCGATCTTGTTGTCATGGTTCAAAC
Found at i:30090040 original size:26 final size:26
Alignment explanation
Indices: 30090011--30090063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30090001 CCAGTTCGAT
* *
30090011 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30090037 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30090063 C
1 C
30090064 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30090210 original size:26 final size:26
Alignment explanation
Indices: 30090180--30090232 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30090170 CCGTTCCGAT
30090180 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
30090206 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30090232 C
1 C
30090233 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30091452 original size:26 final size:26
Alignment explanation
Indices: 30091401--30091453 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30091391 CTGGTCCGAT
* *
30091401 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30091427 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30091453 C
1 C
30091454 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30091812 original size:26 final size:26
Alignment explanation
Indices: 30091776--30091828 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30091766 CCAGTCTGAT
*
30091776 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
30091802 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
30091828 C
1 C
30091829 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:30092094 original size:875 final size:875
Alignment explanation
Indices: 30090879--30092472 Score: 2108
Period size: 876 Copynumber: 1.8 Consensus size: 875
30090869 CCTGCTACCG
* ** * *
30090879 CAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTGTGCTTAGACATGGAATGAAC
1 CAACCCTCGATCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACAGGGAATGAAC
* * * *
30090944 TTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCAGGCCGAAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCACCAGGCCGAAGAGGCAGAAT
* * *
30091009 GCGCAAGCCGAGGATAGGCTCGATCCCTCCCTACGTGCTGTCGATCCTGCCGTCGCAACCCTCGG
131 GCGCAAGCCGAGGATAGGCCCGATCCCTCCCCACGTGCTGTCGATCCTGCCGTCGCAACCCTCGA
* * * * **
30091074 TCCGATCCGATCTTAGATTGGGAATGAACTCCATTTGTCAGAGTCAACCCACAAAATGAGCGTTT
196 TCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCAGAGTCAACCCACAAAATGAACGTAC
** * *
30091139 GGGTGTTGAGCCGGTCGAAAAGGCATAATACGTAAGTCAGGGATCGACCCAATCCCCCTCTGCGT
261 GGGCATCGAGCCGGTCGAAAAGGCATAATACGCAAGTCAGGGATCGACCCAATCCCCCTCTGCGT
* * * * *
30091204 GCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGG-TTAGACATGGAATGAACTTCGTAT
326 GCTACCGGACCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAAGGAATGAACTCCCTAT
* * ** * *
30091268 GCCTAAGCCAACCCACAAAACAGG-TGTGTGGGTGCTCAACCG-GCTAGAGAGGTAGAATGCACG
391 GCCTAAGCCAACCCACAAAAC-GGACGTGCGGGCACTCAACCGATC-AGAGAGGCAGAATGCACG
* * * * * ** * *
30091331 AGCCGGGGATCGATTTGGTTCCCCCTGCGTGCTATCGATCCTGCTACCGTAACCCTTGGTCTGGT
454 AGCCGGGGATCGATCTGATCCCCCCTGCGTGCTATCAATCCTGCTACCGCAACCCTCAGTCCGAT
* *
30091396 CCGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
519 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGAT-AACTCCGTATGCCTAAGTC
* * * ** * * *
30091461 AACCCATGAAATGAGCGTGCGAGCACTCAACCGGCCAGAGAGTTCAGTCGGAGAGGCATAATGTG
583 AACCCACGAAACGAGCGTGCGAGCACTCAACCGACCAGAGAGGCCAATCGGAGAGGCAGAATGCG
* * * * *
30091526 CAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGATCCCACT-GTCGGTCCTACTGCCA
648 CAAGTCGGGGATCAACCCGGACCCCC-CTGCATGCTGCCGATCCCACTACT-AGTCCTACTGCCA
30091590 TAACCCTCGATTTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
711 TAACCCTCGATTTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
30091655 AAGAGCGTGCAAGTGCTCAGCCGGTCGGAGAGGTAGAATGCGTAAGCTGAGGATCGGTCCCCCCT
776 AAGAGCGTGCAAGTGCTCAGCCGGTCGGAGAGGTAGAATGCGTAAGCTGAGGATCGGTCCCCCCT
30091720 ACGTGCTGCCGATCTTACTGCTGGTCTTGCTGCCT
841 ACGTGCTGCCGATCTTACTGCTGGTCTTGCTGCCT
* *
30091755 CAACCCTCGATCCAGTCTGATCTTAGACAGGGAATGAACTTCGTATGCTTAGACAGGGAATGAAC
1 CAACCCTCGATCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACAGGGAATGAAC
* * *
30091820 TCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAACCA-GTCGGAGAGGCAGAA
66 TCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTC-ACCAGGCCGAAGAGGCAGAA
* * * * * *
30091884 TGCGTAAGCTGGGGATCGGCCC-AGTCCC-CCCCACGTGCTGTCGATTCTGCTG-CTGCAACCCT
130 TGCGCAAGCCGAGGATAGGCCCGA-TCCCTCCCCACGTGCTGTCGATCCTGCCGTC-GCAACCCT
* * ** *
30091946 CGATCCGATCCGATCTTAGACTGGGACTGAACTCCGTATGCCTTAGTCAACCCACGAAATGAACG
193 CGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCAGAGTCAACCCACAAAATGAACG
* * * * * *
30092011 TACGGGCATCGAGCCGGTCGGAGAGGCATAATGCGCAAG-CTGGGGATCGACTCAATCCTCCTCT
258 TACGGGCATCGAGCCGGTCGAAAAGGCATAATACGCAAGTC-AGGGATCGACCCAATCCCCCTCT
** *
30092075 GCGTGCTGTCGGACCCGCTGCCACAGCCCTCGGTCCGGCTGGGGCTTAGACAAGGAATGAACTCC
322 GCGTGCTACCGGACCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAAGGAATGAACTCC
* * ** * *
30092140 CTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCATTCAGTCGATCGGAGAGGCAGAATGCG
387 CTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCACTCAACCGATCAGAGAGGCAGAATGCA
* * * *
30092205 CTAGCCGGGGATTGGTCTGATCCCCCCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCAGTCCG
452 CGAGCCGGGGATCGATCTGATCCCCCCTGCGTGCTATCAATCCTGCTACCGCAACCCTCAGTCCG
*
30092270 ATTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAACTCCGTATGCCTAAGT
517 ATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAACTCCGTATGCCTAAGT
* * * * * *
30092335 CAACCCACGAAACGCGCGTGCGGGCGCTCAGCTGACCGGAGAGGCCAATCGGAGAGGCAGAATGC
582 CAACCCACGAAACGAGCGTGCGAGCACTCAACCGACCAGAGAGGCCAATCGGAGAGGCAGAATGC
* * * * *
30092400 GCAAGTTGGGGATCAGCCTGGACCCCCCTGCATGCTGCCGATCCTACTACTAGTCCTACTGCCGT
647 GCAAGTCGGGGATCAACCCGGACCCCCCTGCATGCTGCCGATCCCACTACTAGTCCTACTGCCAT
30092465 AACCCTCG
712 AACCCTCG
30092473 GTCCAGTCTG
Statistics
Matches: 606, Mismatches: 104, Indels: 18
0.83 0.14 0.02
Matches are distributed among these distances:
874 40 0.07
875 269 0.44
876 293 0.48
877 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (875 bp):
CAACCCTCGATCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACAGGGAATGAAC
TCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCACCAGGCCGAAGAGGCAGAAT
GCGCAAGCCGAGGATAGGCCCGATCCCTCCCCACGTGCTGTCGATCCTGCCGTCGCAACCCTCGA
TCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCAGAGTCAACCCACAAAATGAACGTAC
GGGCATCGAGCCGGTCGAAAAGGCATAATACGCAAGTCAGGGATCGACCCAATCCCCCTCTGCGT
GCTACCGGACCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAAGGAATGAACTCCCTAT
GCCTAAGCCAACCCACAAAACGGACGTGCGGGCACTCAACCGATCAGAGAGGCAGAATGCACGAG
CCGGGGATCGATCTGATCCCCCCTGCGTGCTATCAATCCTGCTACCGCAACCCTCAGTCCGATCC
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGAGCACTCAACCGACCAGAGAGGCCAATCGGAGAGGCAGAATGCGCAA
GTCGGGGATCAACCCGGACCCCCCTGCATGCTGCCGATCCCACTACTAGTCCTACTGCCATAACC
CTCGATTTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAG
CGTGCAAGTGCTCAGCCGGTCGGAGAGGTAGAATGCGTAAGCTGAGGATCGGTCCCCCCTACGTG
CTGCCGATCTTACTGCTGGTCTTGCTGCCT
Found at i:30092157 original size:159 final size:157
Alignment explanation
Indices: 30091801--30092303 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 157
30091791 AACTTCGTAT
* * * * *
30091801 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAA
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGC-ATCAG
* * * * *
30091866 CCAGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCAGTCCCCCCCACGTGCTGTCGATTC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAATCCCCCCCACGTGCTGTCGATCC
* **
30091931 TGCTGCTGCAACCCTCGATCCGATCCGA
130 CGCTGCCACAACCCTCGATCCGATCCGA
* * * * * *
30091959 TCTTAGACTGGGACTGAACTCCGTATGCCTTAGTCAACCCACGAAATGAACGTACGGGCATCGAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCATC-AG
* * * **
30092024 CCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACTCAATCCTCCTCTGCGTGCTGTCGGA-
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAATCC-CCCCCACGTGCTGTC-GAT
* * * * *
30092088 CCCGCTGCCACAGCCCTCGGTCCG-GCTGGG
128 CCCGCTGCCACAACCCTCGATCCGATC-CGA
* * * *
30092118 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCATTCAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCA-TCAG
* * * * * ** ** ** *
30092183 TCGATCGGAGAGGCAGAATGCGCTAGCCGGGGATTGGTCTGATCCCCCCTGCGTGCTGTCAATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAATCCCCCCCACGTGCTGTCGATCC
* * * *
30092248 TGCTACCGCAACCCTC-AGTCCGATTCGA
130 CGCTGCCACAACCCTCGA-TCCGATCCGA
* * *
30092276 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACAGGGAATGAACTCCGTATGC
30092304 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 65, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 148 0.54
159 117 0.43
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCATCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAATCCCCCCCACGTGCTGTCGATCCC
GCTGCCACAACCCTCGATCCGATCCGA
Found at i:30092327 original size:25 final size:26
Alignment explanation
Indices: 30092277--30092328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30092267 CCGATTCGAT
30092277 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30092303 CTTAGACTGGGGAT-AACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30092328 C
1 C
30092329 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30093025 original size:26 final size:26
Alignment explanation
Indices: 30092989--30093041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30092979 CCGGTCTAAT
30092989 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
30093015 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30093041 C
1 C
30093042 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30093750 original size:26 final size:26
Alignment explanation
Indices: 30093712--30093764 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30093702 GGCTCAAACT
*
30093712 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30093738 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30093764 C
1 C
30093765 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30094300 original size:26 final size:26
Alignment explanation
Indices: 30094262--30094317 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
30094252 CCGGTCTGAT
30094262 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
**
30094288 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30094314 CTTA
1 CTTA
30094318 ATCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30094826 original size:158 final size:159
Alignment explanation
Indices: 30094572--30094876 Score: 400
Period size: 158 Copynumber: 1.9 Consensus size: 159
30094562 GCATGCTACC
* * * * *
30094572 GGTCTCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTCGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCATAGACATGGAATGAACTCCCTATGCCTAA
* * * * * *
30094637 GCCAACCCATGAAACGGATGTGTGGAAGCTCAG-CGGCCGGAAAGGTAGAATGCGCAAGCCGGGG
66 GCCAACCCACGAAAAGGACGTGCGGAAGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGG
*
30094701 ATCAGTCC-GGTCCCCCTCTGTGTGCTGCA
131 ATC-GACCTGGTCCCCCTCTGTGTGCTGCA
* *
30094730 GGTCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCTTAA
1 GGTCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCATAGACATGGAATGAACTCCCTATGCCTAA
** * * *
30094795 GCCAACCCACGAAATAGG-CGTGCGGGTGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCCGGG
66 GCCAACCCACGAAA-AGGACGTGCGGAAGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGG
30094859 GATCGACCTGGTCCCCCT
130 GATCGACCTGGTCCCCCT
30094877 GCGTGCTACC
Statistics
Matches: 125, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
158 85 0.68
159 40 0.32
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (159 bp):
GGTCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCATAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAAAGGACGTGCGGAAGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGG
ATCGACCTGGTCCCCCTCTGTGTGCTGCA
Found at i:30094962 original size:26 final size:26
Alignment explanation
Indices: 30094923--30094973 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30094913 AATTAGATCA
*
30094923 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
30094949 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
30094974 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:30095459 original size:867 final size:858
Alignment explanation
Indices: 30093737--30096067 Score: 2591
Period size: 867 Copynumber: 2.7 Consensus size: 858
30093727 AACTCCGTAT
* *
30093737 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTG-GA-AGCTCAG
* * * *
30093802 CCAGCCGGAGAGGTAGAATACGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAGTC
64 -CGGCCGGAAAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGTGTGCTGCCAGTC
* *
30093867 CCGTTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTGCCACAACCC-TAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
30093932 ACCCATGAAATGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAAAGCGTAAGCCGAGGA-CT
192 ACCCATGAAATGGGCGTGCGGGTGCTCAGTC-GACGGAGAGGCAGAATGCGTAAGCCGGGGATC-
* * * **
30093996 GTCCCGATCCCCCCTACGTGCTACCGATCCTATTGCCACAACCCTCGGTCCGTTAGATCTTAGAT
255 GACCCGGT-CCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGTTAGATCTTAGAT
* * * * * *
30094061 TGGGAATGAACTCCATGTGCTTAGACTGGGGAAGAACTTC-TATGCCTAACTCAGCCCATGAAAC
319 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAAT
* ** * * * * * * *
30094125 GACCGTGCGAGTGCTCAACCGACTGGAGAGGCCGGCCAAAGAGGCAGAATGCGCAAGCTGGGGAT
384 GACCGTGCGGGCACTCAACCGACCGGAGAGGTCGGTCGAAGAGGCAGAATGCACAAGCCGAGGAT
* ** * * *
30094190 CAGCCAGGTCCCCCCTACGTGCTGTTGATCCTGCTGCTGGTCCTACTACCGTAACCCTCGATCCG
449 CAGCCA-GTCCCCCTTAC-TGCTGCAGATCCTGCTGCTGGTCCTACT-GCGCAACCCTCGATCTG
* * *
30094255 GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCTTAA-
511 GTCTGATCTTAGA-TTGGAATGAACT-CGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAG
* ** * *
30094319 TCCAACCCATGGAACGAGCGTGCGGGTGCTCAGCAGGCTGGAGAGGCAGAATACGTAAGCCAGGG
574 T-CAACCCATGAAACGAGCGTGCGGGCACTCAACAGGCTGAAGAGGCAGAATACGTAAGCCAGGG
* * * * * *
30094384 ACCAACCCGGTCCCCTCTTACGTTCTGTCGATCCAAGTGCTGCAACCCTTAGTCTGGTCTAATCT
638 ACCAACCCGGTCCCATCCTACGTGCTGTCGATCCAAGTACCGCAACCCTCAGTCTGGTCTAATCT
* * * * ** *
30094449 TAGACTGGGAATGAACTCTGTATGCCTACGTCAACCCATGAAACCAGCGTACGAGCGTTGAGCCG
703 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCCCTGAGCCA
* * * * * * * * * *
30094514 GTCGGAGAGGCATAACACGCAAGCTGGGGATTGGCTCGATCCCCTTCAGCATGCTACCGGTCTCG
768 GTCGAAAAGGCATAACACGCAAGCCGAGGATCGACCCGATCCCCCTCAGCATCCTACCGATCTCG
* *
30094579 CTGCCACAACCCTCGGTCTGGCTAGG
833 CTGCCACAACCCTCGATCCGGCTAGG
* *
30094605 GCTTCGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGATGTGTGGAAGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAC-GA-GTGTGGAAGCTCAG
* *
30094670 CGGCCGGAAAGGTAGAATGCGCAAGCCGGGGATC-AGTCCGGTCCCCCTCTGTGTGCTG-CAGGT
64 CGGCCGGAAAGGTAGAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCCTCTGTGTGCTGCCA-GT
* * *
30094733 CCCGCTGCCACAACCCTCAGTCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCTTAAGCC
127 CCCGCTGCCACAACCCT-AGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * *
30094798 AACCCACGAAATAGGCGTGCGGGTGCTCAGCCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATC
191 AACCCATGAAATGGGCGTGCGGGTGCTCAGTC-GACGGAGAGGCAGAATGCGTAAGCCGGGGATC
* ** * * *
30094863 GACCTGGTCCCCCTGCGTGCTACCGATCCTGCTGCCATGACCCTCGGTCCAATTAGATCATAGAC
255 GACCCGGTCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCC-GTTAGATCTTAGAT
* * *
30094928 TGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACATGAAAT
319 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAAT
* * * * *
30094993 GAGCGTGCGGGCACTCAACTGGCCGGATAGGTCGGTCGAAGAGGCAGAATGCACGAGCCGAGGAT
384 GACCGTGCGGGCACTCAACCGACCGGAGAGGTCGGTCGAAGAGGCAGAATGCACAAGCCGAGGAT
* ** *
30095058 CAGCCTAGTCGCCCCTTACTGCTGCAGATCCTACTGCTGGTCCTGTTGTTGCAACCCTCGATCTG
449 CAGCC-AGTC-CCCCTTACTGCTGCAGATCCTGCTGCTGGTCCTACTG-CGCAACCCTCGATCTG
30095123 GTCTGATCTTAGATTGGAAATGAACTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGT
511 GTCTGATCTTAGATTGG-AATGAACTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGT
* * * * *
30095188 CAACCCACGAAACGAGCGTGTGGGCACTCAACCGG-TCGAAGAGGTAGAATACGTAAGCCGGGGA
575 CAACCCATGAAACGAGCGTGCGGGCACTCAACAGGCT-GAAGAGGCAGAATACGTAAGCCAGGGA
* * * * * * *
30095252 CCGACTCGGTGCCATCCTACGTGCTGTCGATCC-TGCTACCGTAACCCTCGGTCTGGTCTGATCT
639 CCAACCCGGTCCCATCCTACGTGCTGTCGATCCAAG-TACCGCAACCCTCAGTCTGGTCTAATCT
* ** * *
30095316 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTTTGATCCCTGAGTCA
703 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCCCTGAGCCA
** * * * * **
30095381 GTCGAAAAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTCCTGTCGATC-CT
768 GTCGAAAAGGCATAACACGCAAGCCGAGGATCGACCCGATCCCCCTCAGCATCCTACCGATCTC-
* * *
30095445 GTTGCCATAACCCTCGATCCGGCTGGG
832 GCTGCCACAACCCTCGATCCGGCTAGG
* * *
30095472 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTTGG-TGCTTA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA--GTG-TGGAAGC-TC
* ** * * * **
30095536 ACCGATC-GAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTGTGTGCTGTTAG
62 AGCGGCCGGAA-AGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGTGTGCTGCCAG
* * * * *
30095600 TCCCGCTACCACAACCCTAGGTCTGACTGGGGCTTAGACTTGGAATGAACTCCTTATTCCTAAGC
126 TCCCGCTGCCACAACCCTA-GTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * ** **
30095665 GAACCCATGAAACGGGGCGTGCAGATGCTAAGTCGACTGGAGAGGCAGAATGCACAAGTTGGGGA
190 CAACCCATGAAA-TGGGCGTGCGGGTGCTCAGTCGAC-GGAGAGGCAGAATGCGTAAGCCGGGGA
** * * * * *
30095730 TC-AGCCCGGTCCCCCTGCGTGCTGTCGATCGTGCTGCCGCAACCCTCGATTCGGTTTGATCTTA
253 TCGA-CCCGGTCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCG-GTCCGTTAGATCTTA
**
30095794 GATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAA
316 GATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGA
* * * * * * * *
30095859 AATGATCGTGCGGCCACTCAACCAACCGGAGAGGTCCGTCGGATAGGCAGAATGCATAAGCCAAG
381 AATGACCGTGCGGGCACTCAACCGACCGGAGAGGTCGGTCGAAGAGGCAGAATGCACAAGCCGAG
* * *
30095924 GATCGGCCCAGTCCCCCTGT-GTGATGCAGATCCTGCTGCTGGTCCTACTGCGCAACCCTCGATC
446 GATCAG-CCAGTCCCCCT-TACTGCTGCAGATCCTGCTGCTGGTCCTACTGCGCAACCCTCGATC
* * * *
30095988 TGATCTAATTTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTA
509 TGGTCTGATCTTAGA-TTGGAATGAACTC-GTATGCTTAGACATGGAATGAACTCTGTATGCCTA
30096053 AG-CGAACCCATGAAA
572 AGTC-AACCCATGAAA
30096068 TAAGCATGCG
Statistics
Matches: 1225, Mismatches: 206, Indels: 64
0.82 0.14 0.04
Matches are distributed among these distances:
866 46 0.04
867 563 0.46
868 387 0.32
869 221 0.18
870 8 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (858 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGGAAGCTCAGCG
GCCGGAAAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGTGTGCTGCCAGTCCCG
CTGCCACAACCCTAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ATGAAATGGGCGTGCGGGTGCTCAGTCGACGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCG
GTCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGTTAGATCTTAGATTGGGAAT
GAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGACCGTG
CGGGCACTCAACCGACCGGAGAGGTCGGTCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCAG
TCCCCCTTACTGCTGCAGATCCTGCTGCTGGTCCTACTGCGCAACCCTCGATCTGGTCTGATCTT
AGATTGGAATGAACTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
ACGAGCGTGCGGGCACTCAACAGGCTGAAGAGGCAGAATACGTAAGCCAGGGACCAACCCGGTCC
CATCCTACGTGCTGTCGATCCAAGTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCCCTGAGCCAGTCGAAAAGGCAT
AACACGCAAGCCGAGGATCGACCCGATCCCCCTCAGCATCCTACCGATCTCGCTGCCACAACCCT
CGATCCGGCTAGG
Found at i:30095545 original size:159 final size:159
Alignment explanation
Indices: 30095154--30095678 Score: 506
Period size: 159 Copynumber: 3.3 Consensus size: 159
30095144 GAACTCGTAT
* * * *
30095154 GCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTTGGTACTCAA
* * * * * * * * *
30095219 CCGGTCGAAGAGGTAGAATACGTAAGCCGGGGACCGACTCGGT-GCCATCCTACGTGCTGTCGAT
66 CCGATCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCT-CTGCGTGCTGTCGAT
* *
30095283 CCTGCTACCGTAACCCTCGGTCTGGTCT-GA
130 CCTGCTACCATAACCCTCGGTCTGG-CTGGG
* * * * * * *
30095313 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGT-TTGATCCCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTTGGT-ACTC
** * * *
30095376 AGTC-AGTCGAAAAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTCCTGTCG
64 AACCGA-TCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
* * * *
30095440 ATCCTGTTGCCATAACCCTCGATCCGGCTGGG
128 ATCCTGCTACCATAACCCTCGGTCTGGCTGGG
* * *
30095472 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTTGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTTGGTACTCAA
* * * * *
30095537 CCGATCGAAGAGGCAGAATGCGCAAG-CTAGGGATCGACCCGATCCCCCTCTGTGTGCTGT-TAG
66 CCGATCGAAGAGGCAGAATGCGTAAGCCGA-GGATCGACCCGGTCCCCCTCTGCGTGCTGTCGA-
* * * *
30095600 TCCCGCTACCACAACCCTAGGTCTGACTGGG
129 TCCTGCTACCATAACCCTCGGTCTGGCTGGG
* * * * *
30095631 GCTTAGACTTGGAATGAACTCCTTATTCCTAAGCGAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
30095679 GGGCGTGCAG
Statistics
Matches: 297, Mismatches: 59, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
158 8 0.03
159 280 0.94
160 9 0.03
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTTGGTACTCAA
CCGATCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
CTGCTACCATAACCCTCGGTCTGGCTGGG
Found at i:30095826 original size:26 final size:26
Alignment explanation
Indices: 30095790--30095842 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30095780 TCGGTTTGAT
*
30095790 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30095816 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30095842 C
1 C
30095843 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30096027 original size:26 final size:26
Alignment explanation
Indices: 30095998--30096049 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30095988 TGATCTAATT
30095998 TTAGAC-TAGGAATGAACTCTGTATGC
1 TTAGACAT-GGAATGAACTCTGTATGC
30096024 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
30096050 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCTGTATGC
Found at i:30096938 original size:26 final size:26
Alignment explanation
Indices: 30096900--30096952 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30096890 GGCTCAAAAT
30096900 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30096926 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30096952 C
1 C
30096953 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30097621 original size:26 final size:26
Alignment explanation
Indices: 30097585--30097637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30097575 CTGGTTCGAT
30097585 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30097611 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30097637 C
1 C
30097638 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30097707 original size:342 final size:340
Alignment explanation
Indices: 30096898--30097708 Score: 941
Period size: 342 Copynumber: 2.4 Consensus size: 340
30096888 GTGGCTCAAA
*
30096898 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAAC
** * * * * *
30096963 CCATGAAAGGAGCGTACG-GGCGCTCAGCCGGCCGGAGAGGCAGAATATG-CAAGATGGGGATCA
65 CCACAAAACGAGCGT--GTGTCGCTCAGTCGGTCGGAGAGGCAG-A-ATGCCAAGACGGGGATCA
* * * **
30097026 GCCCGATCCCCCTCTACGTGTTGTAGGTCCTGCTCCCACAACTTTCTATCCAGCTGGGGCTTAGA
126 ACCCGATCCCCCTCTACGTGCTGCAGGTCCTGCTCCCACAACCCTCTATCCAGCTGGGGCTTAGA
* * * * * *
30097091 CATGGACTAAACTCCCTATCCCTAAGCCAACCCATGAAACGGGCGCACAGGCACTCAGCCGGTCG
191 CATGGAATAAACTCCCTATCCCTAAGCCAACCCATGAAACAGGCACACAGGCACTCAACAGGCCG
* * *
30097156 GAGAGGCAGAATGCGCAAGTCGAGGATCGACCTGGTCCCCCTTGCATGCTGCCGATCCTGCTACC
256 GAGAGGCAGAATGAGCAAGTCGAGGATCGACCTGGTCCCCCCTGCATGCTGCCGATCCTACTACC
*
30097221 GTAACCCTTGGTCCGGTCCT
321 GTAACCCTTGGTCCGGTCCG
* * *
30097241 ATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTAGGAATGAACTCTGAATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
30097306 CCACAAAACGAGCGTTTAGTCGTTGAGTCGGTCGGAAAGGCATAATGCGAAGTCGGGGATTAACC
65 CCACAAAACGAGCGTGT-GTCGCTCAGTCGGTCGGAGAGGCAGAATGCCAAGACGGGGATCAACC
* * * * *
30097371 CGATCCCCCTCTGCGTGCTGCCA-GTCCTGTTGCCATAACCCTC-AGTCCGGCTGGGGCTTAGAC
129 CGATCCCCCTCTACGTGCTG-CAGGTCCTGCTCCCACAACCCTCTA-TCCAGCTGGGGCTTAGAC
* * ** * **
30097434 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGGGTGCTCAACAGGCCGG
192 ATGGAATAAACTCCCTATCCCTAAGCCAACCCATGAAACAGGCACACAGGCACTCAACAGGCCGG
** *
30097499 AGAGGCAGAATGAGCAAGTCGAGGATCGA-CTCGGTCCCCCCTGCATGCTGTTGATCTTACTACC
257 AGAGGCAGAATGAGCAAGTCGAGGATCGACCT-GGTCCCCCCTGCATGCTGCCGATCCTACTACC
* *
30097563 GTAA-CCTTCGGTCTGGTTCG
321 GTAACCCTT-GGTCCGGTCCG
* * *
30097583 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCGGTATGCCTATGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
30097648 CCACAAAATGAGCGTGTGTCGCTCAATCGGTCGGAGAGACAGAATGCACAAGCCGGGGATC
65 CCACAAAACGAGCGTGTGTCGCTCAGTCGGTCGGAGAGGCAGAATGC-CAAGACGGGGATC
30097709 GGCCTGGTTC
Statistics
Matches: 391, Mismatches: 68, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
341 34 0.09
342 267 0.68
343 90 0.23
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (340 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACC
CACAAAACGAGCGTGTGTCGCTCAGTCGGTCGGAGAGGCAGAATGCCAAGACGGGGATCAACCCG
ATCCCCCTCTACGTGCTGCAGGTCCTGCTCCCACAACCCTCTATCCAGCTGGGGCTTAGACATGG
AATAAACTCCCTATCCCTAAGCCAACCCATGAAACAGGCACACAGGCACTCAACAGGCCGGAGAG
GCAGAATGAGCAAGTCGAGGATCGACCTGGTCCCCCCTGCATGCTGCCGATCCTACTACCGTAAC
CCTTGGTCCGGTCCG
Found at i:30097819 original size:26 final size:26
Alignment explanation
Indices: 30097781--30097851 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
30097771 CCTATCCGAT
** *
30097781 CTTAGACCAGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30097807 CTTAGACTGGGAATGAACTCCGTGTG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30097833 CTTAGACTGGGGATGAACT
1 CTTAGACTGGGAATGAACT
30097852 TCATATGCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30098853 original size:158 final size:157
Alignment explanation
Indices: 30098555--30099000 Score: 518
Period size: 158 Copynumber: 2.8 Consensus size: 157
30098545 AACTCCATAT
** * * * *
30098555 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGTGCGTACGGGCGCGCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGT-GGGGCGCTCAG
* * * * * * *
30098620 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTCCCTCTCTGTGTGCTGCCGATC
65 CCGGCTGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCC-CTCTGTGTGCTGTCGATC
* *
30098685 CCACTACCACAACCCTAGGTTCGGCTGGG
129 CCACTACCACAACCCTAGGTCCGACTGGG
* *
30098714 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGCGCTCAAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGCGCTCAGC
* * *
30098779 CGGCTGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGGTCCCACTCTGTGTGCTGTCGGTCT
66 CGGCTGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCC-CTCTGTGTGCTGTCGATCC
* * **
30098844 CGCTGCCACAACCCTTTGTCCGACTGGG
130 CACTACCACAACCCTAGGTCCGACTGGG
* * * * *
30098872 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCGAACCCGCGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTG-GGGCGCTCAG
* * * * * *
30098937 TCGG-TCGGAAAGGTAGAATACGCAAGCTGGGGATCGGCCCGAT-CCCTCTGCGTGCTGTCGATC
65 CCGGCT-GGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTGTGCTGTCGATC
30099000 C
129 C
30099001 TACTGTCGCA
Statistics
Matches: 244, Mismatches: 41, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
157 16 0.07
158 136 0.56
159 92 0.38
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGCGCTCAGC
CGGCTGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTGTGCTGTCGATCCC
ACTACCACAACCCTAGGTCCGACTGGG
Found at i:30099050 original size:157 final size:158
Alignment explanation
Indices: 30098555--30099056 Score: 428
Period size: 158 Copynumber: 3.2 Consensus size: 158
30098545 AACTCCATAT
** * * * * *
30098555 GCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGTGCGTACGGGCGCGCA
1 GCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCAT-GGGGCGCTCA
* * * * * * * * * *
30098619 GCCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCC-AGTCCCTCTCTGTGTGCTGCCGA
64 ACCGGCTGGAAAGGCAGAATACGCAAGCCGGGGATCGGCCCGA-TCCCACTCTGCGTGCTGTCGA
* * * * * * *
30098683 TCCCACTACCACAACCCTAGGTTCGGCTGGG
128 TCTCACTGCCACAAACCTCGGTCCGACTGGA
* *
30098714 GCTTAGACATA-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGCGCTCAA
1 GCTTAGAC-TAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATGGGGCGCTCAA
* * * * *
30098778 CCGGCTGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGGTCCCACTCTGTGTGCTGTCGGTC
65 CCGGCTGGAAAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCACTCTGCGTGCTGTCGATC
* * ** *
30098843 TCGCTGCCACAACCCTTTGTCCGACTGGG
130 TCACTGCCACAAACCTCGGTCCGACTGGA
* * * *
30098872 GCTTAGAC-ATGGAATGAACTCCTTATGCCTAAGCGAACCCGCGAAATGGGCATGCGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATG-GGGCGCTCA
** * *
30098936 GTCGG-TCGGAAAGGTAGAATACGCAAGCTGGGGATCGGCCCGAT-CC-CTCTGCGTGCTGTCGA
64 ACCGGCT-GGAAAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCACTCTGCGTGCTGTCGA
* * *
30098998 TC-CTACTGTCGCAAACCTCGGTCTGATCT-GA
128 TCTC-ACTGCCACAAACCTCGGTCCGA-CTGGA
*
30099029 TCTTAGACTAGGAATGAACTCCATATGC
1 GCTTAGACTAGGAATGAACTCCATATGC
30099057 TTAGGTTGGG
Statistics
Matches: 285, Mismatches: 48, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 56 0.20
158 136 0.48
159 90 0.32
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATGGGGCGCTCAAC
CGGCTGGAAAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCACTCTGCGTGCTGTCGATCT
CACTGCCACAAACCTCGGTCCGACTGGA
Found at i:30100083 original size:159 final size:157
Alignment explanation
Indices: 30099793--30100281 Score: 499
Period size: 159 Copynumber: 3.1 Consensus size: 157
30099783 AGACATTAAT
* * * *
30099793 TGAACTCCGTATGCCTAAGCCAACCAATAAAACGAGCTTGC-GGTGCTCAGCCAGTC-AGAGAGG
1 TGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCGCTCAGCCAGTCGA-AGAGG
* * * *
30099856 CAGAATGCAG-AAGTCGAGGATC-AGCCCGGTCCCCCACTATGTGCTATCGATCCTGCTATCACA
65 CAGAATGC-GCAAGCCGGGGATCGA-CCCGGTCCCCC-CTGTGTGCTAT-GATCCTGCTACCACA
30099919 ACCCTCGGTCCGGTCTGATCTTAGACTAGGAA
126 ACCCTCGGTCCGGTCTGATCTTAGACTAGGAA
* * * *
30099951 TGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCCAGTCGAAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCGCTCAGCCAGTCGAAGAGGC
* * * * *
30100016 ATAATGCGCAGGCCGGGGATCGACCCGATCCCCCTCTGTGTGCTACTGGT-CTGACTACCACAGC
66 AGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGTGTGCTA-TGATCCTG-CTACCACAAC
* * ** *
30100080 CCTCAGTCTGG-CTGGGGCTGAGAC-ATGGAA
128 CCTCGGTCCGGTCT-GATCTTAGACTA-GGAA
* * * * *
30100110 TGAACTCCGTATGCCTAAGCCAACCTATGAAAAG-GGGCATCGGGCGCTCAGCCAGTCGGAGAGG
1 TGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTA-CGGGCGCTCAGCCAGTCGAAGAGG
* * * * * * *
30100174 CAGAATGGGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTATTGATCCTGCTGCCGCAACC
65 CAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTA-TGATCCTGCTACCACAACC
*
30100239 CTCGGTCCGGTCCGATCTTAGACTAGGAA
129 CTCGGTCCGGTCTGATCTTAGACTAGGAA
30100268 TGAACTCCGTATGC
1 TGAACTCCGTATGC
30100282 TTAGACTAGG
Statistics
Matches: 269, Mismatches: 50, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
158 98 0.36
159 168 0.62
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
TGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCGCTCAGCCAGTCGAAGAGGC
AGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTATGATCCTGCTACCACAACCCT
CGGTCCGGTCTGATCTTAGACTAGGAA
Found at i:30100284 original size:26 final size:26
Alignment explanation
Indices: 30100255--30100310 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
30100245 CCGGTCCGAT
30100255 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
30100281 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30100307 CTTA
1 CTTA
30100311 AGTCAACCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30100978 original size:159 final size:159
Alignment explanation
Indices: 30100636--30101070 Score: 500
Period size: 159 Copynumber: 2.7 Consensus size: 159
30100626 AACTCTGTAT
* * * *
30100636 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGTGCAGGCGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA----GTGTGCGGGCGT
* * *
30100701 TCAGTCGATCGAAGAGGCAGAATGCGCAAGTCGGGGA-CTGGCCCGTTCCCCC-CTACGTGCTGT
62 TCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GGCCCGATCCCCCTCTACGTGCTGT
* * * * *
30100764 GGATCTTGCTGCCACAACCCTCAGTCTGATTTGA
126 GGATCTAGCTACCACAACCCTCAGTCCGACTGGA
** * *
30100798 TTTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGTTCA
* * * *
30100862 GCCGGTCGGAGAGGCAGAATGCACAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGG-
65 GCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGT-GGA
** * *
30100926 TCTAGCTACCACAACCCTTGGTCCGGCTGGG
129 TCTAGCTACCACAACCCTCAGTCCGACTGGA
* * * * *
30100957 GCTTAGACATGGAATAAACTCCCTATGCCTAAGTCAACCCATAAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGTTCAG
* *
30101022 CCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCT
66 CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCT
30101071 GCGTGCTGCT
Statistics
Matches: 229, Mismatches: 39, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
158 52 0.23
159 131 0.57
160 3 0.01
161 1 0.00
162 42 0.18
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGTTCAG
CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTGGATC
TAGCTACCACAACCCTCAGTCCGACTGGA
Found at i:30101808 original size:158 final size:157
Alignment explanation
Indices: 30101541--30102042 Score: 416
Period size: 158 Copynumber: 3.2 Consensus size: 157
30101531 TCGGCTAGGG
* * * *** *
30101541 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGTGCGCGGGCACTCTG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAG
* * * * ** * * * * *
30101605 TCGGCCAGAGAGGTAGAATGCATAAGCCAGGGACCGACCCAGTCCCCCCTACGTGTTGTCGATCC
65 CCGGTCAGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTG-TGTCGATCC
30101670 TGCTGCCACAACCCTCGGTCCAATCCGAT
129 TGCTGCCACAACCCTCGGTCCAATCCGAT
* * * ** *
30101699 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGC
* * * * *
30101764 CGGTCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTTGGTCC
66 CGGTCAGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTG-TGTCGATCC
* * ** * **
30101829 CGCTGCCACAACCCTTGGTCTGA-CTGGGG
129 TGCTGCCACAACCCTCGGTCCAATC-CGAT
* * * *
30101858 CTTAGACAT-GGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGGGCTTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAG
** * * * * *
30101922 CCGGTCAGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTACCCTCTGCGTGTGACCGATCC
65 CCGGTCAGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGTG-TCGATCC
* ** * *
30101987 TCCTGCCGTAACCCTCGCTCCAATCTGAT
129 TGCTGCCACAACCCTCGGTCCAATCCGAT
* * * *
30102016 CTTAGATTGGTAATGAAATCCATATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
30102043 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 72, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 4 0.02
158 135 0.51
159 125 0.47
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGC
CGGTCAGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGTGTCGATCCTG
CTGCCACAACCCTCGGTCCAATCCGAT
Found at i:30102450 original size:26 final size:26
Alignment explanation
Indices: 30102411--30102461 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30102401 GGTCTGATCT
30102411 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
*
30102437 TAGACTAGGG-ATGAACTCTGTATGC
1 TAGACT-GGGAATGAACTCCGTATGC
30102462 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:30103512 original size:26 final size:25
Alignment explanation
Indices: 30103473--30103524 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
30103463 GGCTCAAACT
30103473 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
30103498 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
30103524 C
1 C
30103525 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:30103855 original size:26 final size:26
Alignment explanation
Indices: 30103815--30103865 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30103805 TGATCCAATC
*
30103815 TTAGATTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
30103841 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
30103866 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:30104207 original size:26 final size:26
Alignment explanation
Indices: 30104169--30104219 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30104159 CCGGTCCGAT
*
30104169 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30104195 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
30104220 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30104402 original size:26 final size:26
Alignment explanation
Indices: 30104364--30104416 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30104354 CCGGTCTGAT
30104364 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
**
30104390 CTTAGACAT-GGAATGAACTGCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
30104416 C
1 C
30104417 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:30104422 original size:195 final size:196
Alignment explanation
Indices: 30103998--30104520 Score: 590
Period size: 195 Copynumber: 2.7 Consensus size: 196
30103988 TGCGGCTGGG
* * ***
30103998 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGCGGGTGCTCAG
* * * *
30104063 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATTCCCCCTGCGTGCTGTCGATCC
66 CCGGCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGCGCTGTCCATCC
* **
30104128 TACTTCTGGTCCCGCTACTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTA
131 TACTTCTGGTCCCGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACACCGTA
30104193 T
196 T
* * *
30104194 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCAATGAAACGAACGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGCGGGTGCTCAG
* * * * *
30104259 TCGGTCAG-AGAGGCAGAATGCGTAAGCCAGGGATTGGCCTTG-TCCCCCCTGTGCGCTG-CCAT
66 CCGG-CAGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCC-CGATCCCCCCTGCGCGCTGTCCAT
* * * *
30104321 CCT-GTTACTGGTCCTGCTGCAGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACACC
129 CCTACTT-CTGGTCCCGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACACC
30104385 GTAT
193 GTAT
* * * * * * *
30104389 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCACGAAAC-AAGCATACGAGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAA-CGTGCGGGTGCTCA
* * * * * * * * *
30104453 GCCGACTGGAGAGGCAGAATACGTAAGTCGGGGATTGGCCCGATCCCCCCATGCGTGCTG-CCGA
65 GCCGGCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCC-TGCGCGCTGTCC-A
30104517 TCCT
128 TCCT
30104521 GCTACTGCAA
Statistics
Matches: 276, Mismatches: 43, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
194 7 0.03
195 150 0.54
196 111 0.40
197 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGCGGGTGCTCAG
CCGGCAGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGCGCTGTCCATCC
TACTTCTGGTCCCGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACACCGTA
T
Found at i:30104902 original size:26 final size:26
Alignment explanation
Indices: 30104866--30104918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30104856 CTGGTCTGAT
*
30104866 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30104892 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30104918 C
1 C
30104919 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30105270 original size:26 final size:26
Alignment explanation
Indices: 30105234--30105284 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30105224 TGGTCTGATC
*
30105234 TTAGACTTGGAATGAACTCCGTATGG
1 TTAGACATGGAATGAACTCCGTATGG
*
30105260 TTAGACATGGAATGAACTCTGTATG
1 TTAGACATGGAATGAACTCCGTATG
30105285 CCTAAGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:30105554 original size:159 final size:159
Alignment explanation
Indices: 30105274--30105562 Score: 366
Period size: 159 Copynumber: 1.8 Consensus size: 159
30105264 ACATGGAATG
* * * * * * *
30105274 AACTCTGTATGCCTAAGTGAACCCATAAAACGAGCGTGCGGGCGCTCAGCTGATCGTAGAGGCAG
1 AACTCTGTATGCCTAAGTCAACACACAAAACGAGCGTACGGGCGCTCAACAGATCGAAGAGGCAG
* * * * * * *
30105339 AATGCATAAGTCGGGGATCGACCCGGTCGCCCCCTGCGTGCTGTCGATCCTACTACCTCAACCCT
66 AATGCACAAGCCGGGGATCGACCCGATCGCCCCCTACGTGCTGCCGATCCCACTACCACAACCCT
30105404 TGATCTGGTCTGATCTTAGACTAGGAACA
131 TGATCTGGTCTGATCTTAGACTAGGAACA
* * *
30105433 AACTCTGTATGCCTAAGTCAACACACAAAACGAGCGTACGGGCGCTGAACAGGTCGAAGAGGCAT
1 AACTCTGTATGCCTAAGTCAACACACAAAACGAGCGTACGGGCGCTCAACAGATCGAAGAGGCAG
* * *
30105498 AATGCGCAAGCCGGGGATC-AGCCCGATC-CCCCTCTACGTGCTGCCGGTCCCGCTACCACAACC
66 AATGCACAAGCCGGGGATCGA-CCCGATCGCCCC-CTACGTGCTGCCGATCCCACTACCACAACC
30105561 CT
129 CT
30105563 CAGTCCTATT
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 5 0.05
159 103 0.95
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
AACTCTGTATGCCTAAGTCAACACACAAAACGAGCGTACGGGCGCTCAACAGATCGAAGAGGCAG
AATGCACAAGCCGGGGATCGACCCGATCGCCCCCTACGTGCTGCCGATCCCACTACCACAACCCT
TGATCTGGTCTGATCTTAGACTAGGAACA
Found at i:30105764 original size:26 final size:26
Alignment explanation
Indices: 30105735--30105787 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30105725 CTGATCCGAT
30105735 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGAG-ATGAACTCTGTATG
30105761 CTTAGACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCTGTATG
30105787 C
1 C
30105788 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCTGTATG
Found at i:30106456 original size:26 final size:26
Alignment explanation
Indices: 30106420--30106472 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30106410 GGCTCAAACT
*
30106420 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30106446 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30106472 C
1 C
30106473 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30106645 original size:26 final size:26
Alignment explanation
Indices: 30106616--30106668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30106606 CCGATCCAAT
30106616 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
30106642 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30106668 C
1 C
30106669 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30107699 original size:26 final size:26
Alignment explanation
Indices: 30107670--30107722 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30107660 CCGGTCTGAT
*
30107670 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
30107696 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30107722 C
1 C
30107723 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30107853 original size:11 final size:11
Alignment explanation
Indices: 30107834--30107863 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
30107824 TTAGGCTCTT
30107834 CGACGATGCTC
1 CGACGATGCTC
*
30107845 CGGCGATGCTC
1 CGACGATGCTC
30107856 CGACGATG
1 CGACGATG
30107864 GTGCCCCGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (11 bp):
CGACGATGCTC
Found at i:30108138 original size:26 final size:26
Alignment explanation
Indices: 30108106--30108158 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30108096 CCGGTATGAT
30108106 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30108132 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30108158 C
1 C
30108159 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30108817 original size:159 final size:157
Alignment explanation
Indices: 30108315--30108817 Score: 415
Period size: 159 Copynumber: 3.2 Consensus size: 157
30108305 TCGACAGCGG
* * * *
30108315 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAGC
** * * * * * *
30108380 CAACCGGAGAGGTAGAATGTGCAAGTCAGGGA-CTAGCTCGGT-CCCCCCTGCGTGCTATCGATA
66 CAGTCGGAGAGGCAGAATGCGTAAGT-GGGGATC-AGCTCGGTCCCCCCCTGCGTGCTACCGATC
* * *
30108443 CTGCTGCCGCAACACTCGGTCTAGTCCGAT
129 CTGCTACCGCAACCCTCGGTC-AGTCTGAT
* * * * * *
30108473 CTTAGAC-TGGGAATAAACTTCGTATGTCTAAGTCAACCCATGAAAC-GAGCGTTCGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTACGGGCACTCA
* ** * ** ** * * *
30108536 GCCAGTCAGAGAGGCCTAATGCATAAGTTGGGGATCAGCTCAATCCCCTTCTACGTGCTTCCGGT
64 GCCAGTCGGAGAGGCAGAATGCGTAAG-TGGGGATCAGCTCGGTCCCCCCCTGCGTGCTACCGAT
* ** ** * * **
30108601 CCCGCTACCATAACCCTCAATCCGACTGGGG
128 CCTGCTACCGCAACCCTCGGTCAGTCT-GAT
* ** *
30108632 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAGC
* *
30108697 CGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATC-GACTCGGTCCCCCCCTGCGTGCTGCCGATC
66 CAGTCGGAGAGGCAGAATGCGTAAG-TGGGGATCAG-CTCGGTCCCCCCCTGCGTGCTACCGATC
* *
30108761 CTACTACCGCAACCCTCGGTTCGGTCTGAT
129 CTGCTACCGCAACCCTCGG-TCAGTCTGAT
*
30108791 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30108818 TTAGACTGGG
Statistics
Matches: 259, Mismatches: 75, Indels: 21
0.73 0.21 0.06
Matches are distributed among these distances:
157 1 0.00
158 83 0.32
159 168 0.65
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAGC
CAGTCGGAGAGGCAGAATGCGTAAGTGGGGATCAGCTCGGTCCCCCCCTGCGTGCTACCGATCCT
GCTACCGCAACCCTCGGTCAGTCTGAT
Found at i:30108820 original size:26 final size:26
Alignment explanation
Indices: 30108791--30108843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30108781 TCGGTCTGAT
*
30108791 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30108817 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30108843 C
1 C
30108844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30109244 original size:673 final size:672
Alignment explanation
Indices: 30108097--30109533 Score: 1758
Period size: 673 Copynumber: 2.1 Consensus size: 672
30108087 ACCTTTGGTC
30108097 CGGTATGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTA
1 CGGT-TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTA
* * *
30108162 AGTCAACTCATAAAACAAGCGTGTGGGCACTCAGCTGGCTGGAGAGGCTGGCCAGAGAGGCATAA
65 AGTCAACCCA-AGAA-AAGAGTGTGGGCACTCAGCT-GC----G-GGCTGG-C-GAGAGGCATAA
* * *
30108227 TGCGCAAGCCGAGGATCAGCCAGTCCCCCTCTACGTGCTACCGATCCTGCTGTCGGTCCTACTGC
120 AGCGCAAGCCGAGGATCAGCCAGTCCCCCTCTACGTGCTACCGATCCTGCTATCAGTCCTACTGC
*
30108292 CACAACCCTCAGTTCGACAGCGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG
185 CACAACCCTCAGTCCGACAGCGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG
* * * * * *
30108357 AAACAAGCGTGCGGGCACTCAGCCAACCGGAGAGGTAGAATGTGCAAGTCAGGGACTAGCTCGGT
250 AAACAAGCATGCGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCAGGGACGAGCCCGGT
* * * *
30108422 CCCCCCTGCGTGCTATCGATACTGCTGCCGCAACACTCGGTCTAGTCCGATCTTAGACTGGGAAT
315 CCCCCCTGCGTGCTATCGATACTGCTACCACAACACTCAGTCTAGTCCAATCTTAGACTGGGAAT
* * * *
30108487 AAACTTCGTATGTCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTGAGCCAGTCAGAGAGGCC
380 AAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAGCCAGAGAGGCC
* ** * * * * *
30108552 TAATGCATAAGTTGGGGATCAGCTCAATC-CCCTTCTACGTGCTTCCGGTCCCGCTACCATAACC
445 TAATGCACAAGCCGGGGATCAGCCCAATCTCCCTT-TACATGCTACCGGTCCCACTACCACAACC
*
30108616 CTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGG
509 CTCAATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGG
** * * *
30108681 CGTACGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACTCGGTCCCCCCC
574 CGTACGGGTGCTCAACCGGTCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACTCGGT-CCCCCC
30108746 TGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTT
638 TGCGTGCTGCCGATCCTACTACCGCAACCCTCGG-T
**
30108782 CGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
1 CGGT-TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTA
* *
30108847 AGTCAACCCAAGAAATGAGTGTGCGAGCACTCAG-T-C-GGCT-G-GAGAGGCATAAAGCGTAAG
65 AGTCAACCCAAGAAAAGAGTGTG-G-GCACTCAGCTGCGGGCTGGCGAGAGGCATAAAGCGCAAG
* * * * * *
30108907 CCGGGGATTAGCCTGGTCCCCCTTTACGTGCTACCGAT-CTCGCTATCAGTCCTGCTGCCATAAC
128 CCGAGGATCAGCC-AGTCCCCCTCTACGTGCTACCGATCCT-GCTATCAGTCCTACTGCCACAAC
* * * * * *
30108971 CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
191 CCTCAGTCCGACAGCGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAA
* * *
30109036 GCATGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCGA-CCCGGTCCCCC
256 GCATGCGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCAGGGA-CGAGCCCGGTCCCCC
* * * * * * *
30109100 TTGCGTGTTGTCGATCCTGCTACCACAACACTCAGTCTGGTTCAATCTTAGACTGGGAATCAACT
320 CTGCGTGCTATCGATACTGCTACCACAACACTCAGTCTAGTCCAATCTTAGACTGGGAATAAACT
* * * *
30109165 CCTTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCATTGAGCCGGCC-GAAGAGGCGTAAT
385 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAGCCAG-AGAGGCCTAAT
* * * * * **
30109229 GCACAGGCCGGGGATCAGCCCGATCTCCCTTTGCATGCTACTGGTCCCACTGCCACAACCCTCGG
449 GCACAAGCCGGGGATCAGCCCAATCTCCCTTTACATGCTACCGGTCCCACTACCACAACCCTCAA
* * * ** *
30109294 TCTGGCTAGGGCTTAGACATGGAATGAGCTCTGTATGCCTAAGCCAACCCATGAAACGGGCGTAC
514 TCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTAC
* * * * *
30109359 GGGTGCTTAACCGGTTGGAGAGGCAAAATGCGTAAGCCGAGGCTTGGCTCGGTCCCCCCTGCGTG
579 GGGTGCTCAACCGGTCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACTCGGTCCCCCCTGCGTG
* * **
30109424 CTGCTGATCCTGCTGTCGCAACCCTCGGT
644 CTGCCGATCCTACTACCGCAACCCTCGGT
* * * * * *
30109453 CTGATTCGATCATAGACTTGGAATGAACTCCCTATGGTTAGACTGGGGATGAACTCCCTATGCCT
1 C-GGTT-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCT
*
30109518 AAGTCAACCCATGAAA
64 AAGTCAACCCAAGAAA
30109534 CGAGCATGCG
Statistics
Matches: 647, Mismatches: 96, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
671 3 0.00
672 136 0.21
673 404 0.62
674 7 0.01
675 1 0.00
676 4 0.01
682 1 0.00
683 7 0.01
684 5 0.01
685 79 0.12
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (672 bp):
CGGTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
GTCAACCCAAGAAAAGAGTGTGGGCACTCAGCTGCGGGCTGGCGAGAGGCATAAAGCGCAAGCCG
AGGATCAGCCAGTCCCCCTCTACGTGCTACCGATCCTGCTATCAGTCCTACTGCCACAACCCTCA
GTCCGACAGCGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATG
CGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCAGGGACGAGCCCGGTCCCCCCTGCGT
GCTATCGATACTGCTACCACAACACTCAGTCTAGTCCAATCTTAGACTGGGAATAAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAGCCAGAGAGGCCTAATGCACAAG
CCGGGGATCAGCCCAATCTCCCTTTACATGCTACCGGTCCCACTACCACAACCCTCAATCCGACT
AGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCT
CAACCGGTCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGCCGA
TCCTACTACCGCAACCCTCGGT
Found at i:30109381 original size:159 final size:157
Alignment explanation
Indices: 30108961--30109389 Score: 377
Period size: 158 Copynumber: 2.7 Consensus size: 157
30108951 ATCAGTCCTG
* * * *
30108961 CTGCCATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
* * * * * * *
30109026 CACGAAACGAGCATGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACC
66 CACGAAACGAGCGTACGGG-GCTTAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGACAGACC
* * ** **
30109091 CGGTCCCCCTTGCGTGTTGTCGATCCTG
130 CGATCCCCCTTGCATGTACTCGATCCCA
* * * * ** * *
30109119 CTACCACAACACTCAGTCTGGTTCA-ATCTTAGAC-TGGGAATCAACTCCT-TATGCCTAAGTCA
1 CTGCCACAACCCTCGGTCTGGCT-AGGGCTTAGACAT-GGAATGAACT-CTGTATGCCTAAGCCA
* * * *
30109181 ACCCACGAAACGAGCGTTC-GGGCATTGAGCCGGCCGAAGAGGC-GTAATGCACAGGCCGGGGAT
63 ACCCACGAAACGAGCGTACGGGGC-TT-AGCCGGTCGGAGAGGCAG-AATGCACAAGCCGGGGA-
* *
30109244 CAG-CCCGATCTCCCTTTGCATGCTACT-GGTCCCA
124 CAGACCCGATC-CCCCTTGCATG-TACTCGATCCCA
*
30109278 CTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAGCTCTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
* * * * *
30109343 CATGAAACGGGCGTACGGGTGCTTAACCGGTTGGAGAGGCAAAATGC
66 CACGAAACGAGCGTACGGG-GCTTAGCCGGTCGGAGAGGCAGAATGC
30109390 GTAAGCCGAG
Statistics
Matches: 209, Mismatches: 47, Indels: 29
0.73 0.16 0.10
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 99 0.47
159 95 0.45
160 7 0.03
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGGCTTAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGACAGACCC
GATCCCCCTTGCATGTACTCGATCCCA
Found at i:30109504 original size:26 final size:26
Alignment explanation
Indices: 30109465--30109514 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
30109455 GATTCGATCA
*
30109465 TAGACTTGGAATGAACTCCCTATGGT
1 TAGACTGGGAATGAACTCCCTATGGT
*
30109491 TAGACTGGGGATGAACTCCCTATG
1 TAGACTGGGAATGAACTCCCTATG
30109515 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCCTATGGT
Found at i:30110236 original size:26 final size:26
Alignment explanation
Indices: 30110198--30110250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30110188 GGCTCAAAAT
30110198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30110224 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30110250 C
1 C
30110251 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30110424 original size:26 final size:26
Alignment explanation
Indices: 30110383--30110435 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30110373 CCGGTCTGAT
*
30110383 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30110409 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
30110435 C
1 C
30110436 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30111009 original size:159 final size:157
Alignment explanation
Indices: 30110561--30111009 Score: 469
Period size: 158 Copynumber: 2.8 Consensus size: 157
30110551 CCACTGCCAG
* *
30110561 TCCTGCTGCCACAACCCTCGATCCGACCGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * *
30110626 CAACCCGCGAAACGAGCGTGCAGGCGCTCAGTCGGCAGGAGAGGTAGAATGCACAAGCCGAGGAT
66 CAACCCACGAAACGAGCGTGCAGGCGCTCAG-CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGAT
* *
30110691 CAACTCGGTCCCCCCTGCGTGATATTGA
130 CGACTCGGTCCCCCCTGCGTGATATAGA
* ** * * * ** *
30110719 TCCTGCTGTCGTAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAA
1 TCCTGCTGCCACAACCCTCGATC-CGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
* * * * * * ** * * * *
30110782 GTCAACCCATGAAACGAGTGTACAGGTGCTGAGCCGATC-GATGAGGCATAATGCGCAAGTCGGA
64 GCCAACCCACGAAACGAGCGTGCAGGCGCTCAG-CGGCCGGA-GAGGTAGAATGCGCAAGCCGGG
30110846 GATCGACTCGGTCCCCCTCTGCGT-ACTATCAG-
127 GATCGACTCGGTCCCCC-CTGCGTGA-TAT-AGA
* *
30110878 T-CTCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAG
1 TCCT-GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* *
30110942 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCAGGCCGGAGAGGTAGAATGCGCAAGCCGGGGA
65 CCAACCCACGAAACGAGCGTGCAGGCGCTCAGC-GGCCGGAGAGGTAGAATGCGCAAGCCGGGGA
30111007 TCG
129 TCG
30111010 GCCCGATTCC
Statistics
Matches: 225, Mismatches: 55, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 114 0.51
159 104 0.46
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCAGGCGCTCAGCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATC
GACTCGGTCCCCCCTGCGTGATATAGA
Found at i:30117379 original size:26 final size:26
Alignment explanation
Indices: 30117350--30117402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30117340 CTGATCCGAT
30117350 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30117376 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30117402 C
1 C
30117403 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30118154 original size:159 final size:158
Alignment explanation
Indices: 30117375--30118159 Score: 718
Period size: 158 Copynumber: 5.0 Consensus size: 158
30117365 AACTCCGTAT
* * * * *
30117375 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
** * * * * * *
30117439 GCCGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCAGTCCCCTTCTACGTGCTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCC-CCTACGTGCTGCCGAT
* * *
30117504 CCCGCTGCCACAACCCTCGATCCGACTAGG
129 CCCACTGCCACAACCCTCGATCCGGCTGGG
* * *
30117534 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCAGGCGCTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGC-TCA
* ** * * * * *
30117599 -CCAGCTAGAGAAGCAGAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCCTACGTGATGTCGAT-
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGCCGATC
** * * *
30117662 CCAGCTGCCGTAACCCTCGGTCCGATCT-GA
130 CCA-CTGCCACAACCCTCGATCCG-GCTGGG
* * * * ** * ** * *
30117692 TCTTAGAC-TAGGAATGACCTCCGTATGCATAAGTCAACCCATTAAACGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
* * * * * * * *
30117756 GCTGGCTGAAGAGGCATAATACGCAAGCCGGGGATCGGCCC-GATCCCCCTTGCGTGCTGCCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAG-TCCCCCCTACGTGCTGCCGAT
* *
30117820 CCCACTGCCACAACCCTCGGTCCTGCTGGG
129 CCCACTGCCACAACCCTCGATCCGGCTGGG
* * * * * *
30117850 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * * * * *
30117915 TCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCATACGTGTTGCCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGCCGATCC
** * *
30117980 TGCTACCACAACCCTCGATCTGGCTGGG
131 CACTGCCACAACCCTCGATCCGGCTGGG
* * * * *
30118008 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACAAAATGGGCATGTAGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATG-CGGGCGCTCA
* * * *
30118073 GTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACATGCTGCCAATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGCCGATC
* * **
30118138 CTACTGTCGTAACCCTCGATCC
130 CCACTGCCACAACCCTCGATCC
30118160 AGTCCGGTCA
Statistics
Matches: 504, Mismatches: 110, Indels: 24
0.79 0.17 0.04
Matches are distributed among these distances:
157 8 0.02
158 318 0.63
159 175 0.35
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGCCGATCC
CACTGCCACAACCCTCGATCCGGCTGGG
Found at i:30118626 original size:159 final size:158
Alignment explanation
Indices: 30118353--30118684 Score: 450
Period size: 159 Copynumber: 2.1 Consensus size: 158
30118343 GGTCCTGCTA
* * *
30118353 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCAGCTGGGGCTTAAAAATGGAATGAACTTCATATGCCTAAGCCAACCCAT
* * * * * *
30118418 GAAATGAGCGTACGGGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGG
66 GAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGG
30118483 TCCCCCTATGCATGCTGCCGATCCCACTG
131 TCCCCC-ATGCATGCTGCCGATCCCACTG
*
30118512 CCACAACCCTCGGTCCAGCTGGGGCTTAAAAATGGAATGAAC-TCTGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCCAGCTGGGGCTTAAAAATGGAATGAACTTC-ATATGCCTAAGCCAACCCA
* * **
30118576 TGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTT
65 TGAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCG
* * * **
30118641 GTCCCCCCTGCGTGCTGTCGATCCTGCTG
130 GTCCCCCATGCATGCTGCCGATCCCACTG
**
30118670 CCGTAACCCTCGGTC
1 CCACAACCCTCGGTC
30118685 TAGTTCAATC
Statistics
Matches: 151, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 32 0.21
159 119 0.79
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
CCACAACCCTCGGTCCAGCTGGGGCTTAAAAATGGAATGAACTTCATATGCCTAAGCCAACCCAT
GAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGG
TCCCCCATGCATGCTGCCGATCCCACTG
Found at i:30118627 original size:526 final size:527
Alignment explanation
Indices: 30117811--30118782 Score: 1318
Period size: 526 Copynumber: 1.8 Consensus size: 527
30117801 CCCCTTGCGT
* * *
30117811 GCTGCCGGTCCCACTGCCACAACCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGGTCCCACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
* * *
30117876 GCCTAAGCCAACCCATGAAACGGGCATGCGAGTGCTCAGTCGACCGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCATACGAGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
* * ** **
30117941 CCGAGGATCGGCCCGGTCCCCCATACGTGTTGCCGATCCTGCTACCACAACCCTCGATCTGGCTG
131 CCGAGGATCGGCCCGGTCCCCCATACATGCTGCCGATCCCACTACCACAACCCTCGATCCAGCTG
* * * * *
30118006 GGGCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACAAAATGGGCATGTAGGGCGCT
196 GGGCTTAAAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGTAGGGCGCT
** *
30118071 CAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACATGCTGCCAA
261 CAACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACATGCTGCCAA
* **
30118136 TCCTACTGTCGTAACCCTCGATCCAGTCCGGTCATAGACTGGGAATGAACTCCATATGATTAGA-
326 TCCTACTGCCGTAACCCTCGATCCAGTCCAATCATAGACTGGGAATGAACTCCATATGATTAGAC
* ** * *
30118200 TTGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGTCGG
391 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGG
30118265 AGAGGCTAGTCGGAGAGGCATAATGCACAAATCGAGGATTAGCCCGGTCCCCCTCTATGTGCTAC
456 AGAGGCTAGTCGGAGAGGCATAATGCACAAATCGAGGATTAGCCCGGTCCCCCTCTATGTGCTAC
30118330 CGATCCC
521 CGATCCC
** *
30118337 GCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCATAT
1 GCTGCCGGTCCCACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
* * * * ** *
30118402 GCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCATACGAGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
* * * *
30118467 CCGGGGATCGGCCCGGTCCCCCTATGCATGCTGCCGATCCCACTGCCACAACCCTCGGTCCAGCT
131 CCGAGGATCGGCCCGGTCCCCC-ATACATGCTGCCGATCCCACTACCACAACCCTCGATCCAGCT
** ** * *
30118532 GGGGCTTAAAAATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTG-CGGGCGC
195 GGGGCTTAAAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGTAGGGCGC
* * * ** * * * *
30118596 TCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTTGTCCCCCCTGCGTGCTGTCG
260 TCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACATGCTGCCA
* * * * * * * * *
30118661 ATCCTGCTGCCGTAACCCTCGGTCTAGTTCAATCTTAGATTGGGAATGAACTTCGTATGCTTAGA
325 ATCCTACTGCCGTAACCCTCGATCCAGTCCAATCATAGACTGGGAATGAACTCCATATGATTAGA
*
30118726 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
390 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
30118783 GCCGACCAGA
Statistics
Matches: 377, Mismatches: 67, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
526 247 0.66
527 130 0.34
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (527 bp):
GCTGCCGGTCCCACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
GCCTAAGCCAACCCATGAAACGAGCATACGAGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
CCGAGGATCGGCCCGGTCCCCCATACATGCTGCCGATCCCACTACCACAACCCTCGATCCAGCTG
GGGCTTAAAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGTAGGGCGCT
CAACCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACATGCTGCCAA
TCCTACTGCCGTAACCCTCGATCCAGTCCAATCATAGACTGGGAATGAACTCCATATGATTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGG
AGAGGCTAGTCGGAGAGGCATAATGCACAAATCGAGGATTAGCCCGGTCCCCCTCTATGTGCTAC
CGATCCC
Done.