Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 324 of 402
Found at i:30118730 original size:26 final size:26
Alignment explanation
Indices: 30118694--30118746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30118684 CTAGTTCAAT
* *
30118694 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30118720 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30118746 C
1 C
30118747 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30125608 original size:171 final size:171
Alignment explanation
Indices: 30125307--30125677 Score: 421
Period size: 171 Copynumber: 2.2 Consensus size: 171
30125297 GAACTCCGTT
* *
30125307 AGCTTAGACATGGAATGAACTCCGTATACCTAACTCAACCCACGAAACGAGCGTGCAGGTGCTCA
1 AGCTTAGACATGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCAGGCGCTCA
* ** * *
30125372 ACCGGCCGAAGAGGCATAACGCGTAAGTCGAGGATCAGCCAGGTCCCTCTCTGTGCGCAGTCGAT
66 ACCGGCCGAAGAGGCAAAACGCACAAGACGAGGATCAGCCAGGTCCCTCACTGTGCGCAGTCGAT
* *
30125437 CTTGCTACCGATCCTGCTACCACAACCCTCAG-TCTGACTGG
131 CCTGCTACCGATCCTGCTACCACAACCCTCAGTTCGGACT-G
* *
30125478 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTGCAGGCGGTC
1 AGCTTAGACATGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAACGAGCGTGCAGGCGCTC
* * * ** * * * *
30125542 AGCCGGTCGGAGAGGCAAAATTCACAAGACGGGGATCGGCCCGGT-CCTCCACT-T-CATGCTGT
65 AACCGGCCGAAGAGGCAAAACGCACAAGACGAGGATCAGCCAGGTCCCT-CACTGTGC--GCAGT
* * * *
30125604 CGATCCTGCTACTGGTCCTGCTGCCACAACCCTCAGTTCGGTCTG
127 CGATCCTGCTACCGATCCTGCTACCACAACCCTCAGTTCGGACTG
*
30125649 ATCTTAGAC-TGGGAATGAACTCCGTATGC
1 AGCTTAGACAT-GGAATGAACTCCGTATGC
30125678 TTAGACATGA
Statistics
Matches: 168, Mismatches: 26, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
169 1 0.01
170 5 0.03
171 156 0.93
172 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (171 bp):
AGCTTAGACATGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCAGGCGCTCA
ACCGGCCGAAGAGGCAAAACGCACAAGACGAGGATCAGCCAGGTCCCTCACTGTGCGCAGTCGAT
CCTGCTACCGATCCTGCTACCACAACCCTCAGTTCGGACTG
Found at i:30126030 original size:159 final size:156
Alignment explanation
Indices: 30125676--30126178 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 156
30125666 AACTCCGTAT
* * * *
30125676 GCTTAGACAT-GAATGAACTCCGTATGCCTAAGCCAACCTACGAAACAAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
30125740 CCGGCCGAAGAGGTGGAATGCACAAGTTGGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCT
65 CCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGCCT-ATCCCCCCTGCGTGCTGTCGATCT
* * *
30125805 TGCTGTCGCAACCTTCGGTCTGGTCTGA
129 TGCTGCCGCAACCCTCGGTCTGATCTGA
* * * * * * *
30125833 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGC-TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
30125897 GCTGGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCTATCCCCCTCTGCGTGCTGTCGGT
64 GCCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGC-CTATCCCCC-CTGCGTGCTGTCGAT
* * *
30125962 CTTGCTGCCACAACCCTCGGTTTGAT-TGGG
127 CTTGCTGCCGCAACCCTCGGTCTGATCT-GA
* *
30125992 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
30126057 CCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
65 CCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGG-CCTATCCCCCCTGCGTGCTGTCGATCT
* * *
30126122 TGCTGCTGCAACCCTCGGTCCGGT-TCGA
129 TGCTGCCGCAACCCTCGGTCTGATCT-GA
*
30126150 TCTTAGAC-TGGGAATGAACTCCGTATGCT
1 GCTTAGACAT-GGAATGAACTCCGTATGCT
30126179 TAGACTGGAG
Statistics
Matches: 280, Mismatches: 56, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 11 0.04
158 137 0.49
159 128 0.46
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGCCTATCCCCCCTGCGTGCTGTCGATCTTG
CTGCCGCAACCCTCGGTCTGATCTGA
Found at i:30126180 original size:26 final size:26
Alignment explanation
Indices: 30126151--30126203 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30126141 CCGGTTCGAT
30126151 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
*
30126177 CTTAGACTGGAGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
30126203 C
1 C
30126204 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:30126489 original size:12 final size:12
Alignment explanation
Indices: 30126474--30126506 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
30126464 GTGCTGTTGA
30126474 TCCTGCTGCTGG
1 TCCTGCTGCTGG
30126486 TCCTGCTGCTGG
1 TCCTGCTGCTGG
30126498 TCCTGCTGC
1 TCCTGCTGC
30126507 CACAACCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.36, G:0.30, T:0.33
Consensus pattern (12 bp):
TCCTGCTGCTGG
Found at i:30126559 original size:26 final size:26
Alignment explanation
Indices: 30126530--30126582 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30126520 CCGATCCGAT
*
30126530 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
30126556 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
30126582 C
1 C
30126583 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30128106 original size:159 final size:157
Alignment explanation
Indices: 30127762--30128207 Score: 429
Period size: 159 Copynumber: 2.8 Consensus size: 157
30127752 AACTCCGTAT
* * * *
30127762 GCTTAGACATGGAATGAACTCAATATGGCTAAGCAAACCCATGAAACGAGCGTGC-GGCGCCCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
30127826 CCAGCCGCAGAGGCAGAATGTGCAAGTCAGGGATTGACCTAGTCCCCCCTACGTGTTGTCGATCC
65 CCAGCCGCAGAGGCAGAATGCCCAAGTCAGGGATTGACCGAGTCCCCCCTACGTGCTGCCGATCC
* *
30127891 TGCTGCCACAACCCTCAGTCTGGTCCGA
130 AGCTGCCACAACCCTCAGTCCGGTCCGA
* * * * * *
30127919 TCTTAGAC-TGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
30127983 GCC-GACCAG-AGAGGCATAATGCCCAAGTCAGGGATTGGCCCGA-TCCCCCTCTGCGTGCTGCC
64 GCCAG-CC-GCAGAGGCAGAATGCCCAAGTCAGGGATT-GACCGAGTCCCCC-CTACGTGCTGCC
* ** *
30128045 GGTCCAGCTGCCACAACCCTC-GATCCGGTTGGG
125 GATCCAGCTGCCACAACCCTCAG-TCCGGTCCGA
**
30128078 GCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * * *
30128143 CCAGTCGAAGAGGTAGAATGCATAAGCCGGGGATCGATCCG-GTCCCCCCTGCGTGCTGTCGATC
65 CCAGCCGCAGAGGCAGAATGCCCAAGTCAGGGATTGA-CCGAGTCCCCCCTACGTGCTGCCGATC
30128207 C
129 C
30128208 TACTATCGCA
Statistics
Matches: 233, Mismatches: 43, Indels: 25
0.77 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 44 0.19
158 60 0.26
159 126 0.54
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGCAGAGGCAGAATGCCCAAGTCAGGGATTGACCGAGTCCCCCCTACGTGCTGCCGATCCA
GCTGCCACAACCCTCAGTCCGGTCCGA
Found at i:30128273 original size:26 final size:26
Alignment explanation
Indices: 30128237--30128289 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30128227 CATGTTTGAT
30128237 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
30128263 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30128289 C
1 C
30128290 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30128722 original size:368 final size:354
Alignment explanation
Indices: 30128043--30128727 Score: 795
Period size: 368 Copynumber: 1.9 Consensus size: 354
30128033 CTGCGTGCTG
* *
30128043 CCGGTCCAGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCCATGCCT
1 CCGGTCCAGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCCATGCCT
** * * * * * *
30128108 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGGTAGAATGCATAAGCCGG
66 AAGCCAACCCAAAAAACGAGCATGCGAGCGCTCAGCCAGCCGAAGAGGCAGAATGCACAAGCCGA
* * * *
30128173 GGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTCGATCATGTTTGATC
131 GGATCGACCCGGCCCCCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTCGATCAGGTCTGATC
* * *
30128238 TTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
196 TTAGACTGGCAATAAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * *
30128303 CGAAAAGAGCATGCGGGCGCTCAGCAGGCCGGAGGGGCATAAGGCGTAAGCCGGGGATCTGCTCG
260 CGAAAAGAGCATGCGGGCACTCAGCAGGCCGGAGAGACAGAAGGCGTAAGCCGGGGATCTGCTCG
30128368 ATCCCCCTCTGCGTGTTGTCGATCTCGCTA
325 ATCCCCCTCTGCGTGTTGTCGATCTCGCTA
* * * **
30128398 CCGGTCCTGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCT
1 CCGGTCCAGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCCATGCCT
* * *
30128463 AAGCCAGCCTAAAAAATGAGCATGCGAGCGCTCAGCC-GACCGAAGAGGCAGAATGCACAAGCCG
66 AAGCCAACCCAAAAAACGAGCATGCGAGCGCTCAGCCAG-CCGAAGAGGCAGAATGCACAAGCCG
* *
30128527 AGGATC-AGCCCAGGCCCCCCCTGCGTGCTACCGATCCTGCTGTTGGTCCTACTGTCGCAACCCT
130 AGGATCGA-CCC-GGCCCCCCCTGCGTGCT---G----T-C----GATCCTACTATCGCAACCCT
* * *
30128591 C-AGTCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACAT-GAATTGAATTCCGT
181 CGA-TCAGGTCTGATCTTAGACTGGCAATAAACTCCGTATGCTTAGAC-TGGAA-TGAACTCCGT
* * * * * *
30128654 ATGCCTAAGCCAACCCACGAAATGAG-AGTGCGGGCACTCAGCCGGTCGGAGAGATAGAATGTGT
243 ATGCCTAAGCCAACCCACGAAAAGAGCA-TGCGGGCACTCAGCAGGCCGGAGAGACAGAAGGCGT
30128718 AAGCCGGGGA
307 AAGCCGGGGA
30128728 CCGACCCAAT
Statistics
Matches: 271, Mismatches: 40, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
354 2 0.01
355 117 0.43
356 16 0.06
359 1 0.00
363 1 0.00
364 1 0.00
367 4 0.01
368 128 0.47
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (354 bp):
CCGGTCCAGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCCATGCCT
AAGCCAACCCAAAAAACGAGCATGCGAGCGCTCAGCCAGCCGAAGAGGCAGAATGCACAAGCCGA
GGATCGACCCGGCCCCCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTCGATCAGGTCTGATC
TTAGACTGGCAATAAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAAAGAGCATGCGGGCACTCAGCAGGCCGGAGAGACAGAAGGCGTAAGCCGGGGATCTGCTCGA
TCCCCCTCTGCGTGTTGTCGATCTCGCTA
Found at i:30129470 original size:26 final size:26
Alignment explanation
Indices: 30129441--30129493 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30129431 CCGATCTGAT
*
30129441 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
30129467 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
30129493 C
1 C
30129494 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30129966 original size:157 final size:155
Alignment explanation
Indices: 30129467--30129966 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 155
30129457 ACTCCGTATG
** *
30129467 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAG-ATGCGGGCGCTCAGC
** * * *
30129532 CGACTGGAGAGGCAGAATGCGTAAGCCGAAGA-CTGACTCGATCCCCCCTATGTGCTGTCGATCC
65 CGACCCGAGAGGCAGAATGCGTAAGCCGAGGATC-GGCTCGAT-CCCCCTGTGTGCTGTCGATCC
* * * * *
30129596 TGCTGCTGTAATCCTCGATCCAGTCTGAT
128 TGTTGC-GCAACCCTCGATCCGGTCCGAT
* ** * * *
30129625 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGAGTTTGGGCGTTGAC
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGA-TGCGGGCGCTCAG
* * * * *
30129689 CCGA-CCGAGAGGCATAATACGTAAGCCGAGGATCGGCTCGGTCTCTCTCTGTGTGCTGCCGGA-
64 CCGACCCGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATC-C-CCCTGTGTGCTGTC-GAT
** * * ** **
30129752 CCCATTACGACAACCCTCGATCCGCTTGGGG
126 CCTGTTGCG-CAACCCTCGATCCGGTCCGAT
30129783 CTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAAC-AGGCATGCGGGCGCTCA
1 CTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACGA-G-ATGCGGGCGCTCA
* **
30129846 GCCGACCCGAGAGGCAGAATGCGCAAGCC-AGGGATCGG-TCTGATCCCCCTGCATGCTGTCGAT
63 GCCGACCCGAGAGGCAGAATGCGTAAGCCGA-GGATCGGCTC-GATCCCCCTGTGTGCTGTCGAT
*
30129909 CTTGTTGTCGCAACCCTCGATCCGGTCCGAT
126 CCTGTTG-CGCAACCCTCGATCCGGTCCGAT
30129940 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
30129967 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 54, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
156 6 0.02
157 85 0.31
158 143 0.53
159 36 0.13
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGATGCGGGCGCTCAGCC
GACCCGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATCCCCCTGTGTGCTGTCGATCCTGT
TGCGCAACCCTCGATCCGGTCCGAT
Found at i:30129976 original size:26 final size:26
Alignment explanation
Indices: 30129940--30129992 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30129930 CCGGTCCGAT
30129940 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
30129966 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30129992 C
1 C
30129993 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30130185 original size:171 final size:171
Alignment explanation
Indices: 30129965--30130334 Score: 411
Period size: 171 Copynumber: 2.2 Consensus size: 171
30129955 AACTCTGTAT
* * * * *
30129965 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAA
* * * * * * ** **
30130030 CCGGCCGGAGAGGCATAATGCACAAGCTGAGGTTC-AGCTCGATCTGCCTCTGTGTGCTGTCGAT
66 CCGACCGGAAAGGCAGAATGCACAAGCCGAGGATCGA-CCCGATCCCCCTCTACGTGCTGTCGAT
** * * *
30130094 CCCGCTACCAGTCCTGCTACTGCAACCTTCGGTCTGGCTGGG
130 CCCGCTACCAGTCCTGCTACCACAACCCTCGGTCTGGCTCGA
** * *
30130136 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCA
* * *
30130200 ACCGATCGGAAAGGTAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGAT
65 ACCGACCGGAAAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGAT
* * * * *
30130265 CCTGCTGCTAGTCCTGCTACCATAACCCTCGGTCTGGTTCGA
130 CCCGCTACCAGTCCTGCTACCACAACCCTCGGTCTGGCTCGA
*
30130307 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
30130335 TTAGACATGG
Statistics
Matches: 163, Mismatches: 33, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
170 1 0.01
171 160 0.98
172 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAA
CCGACCGGAAAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATC
CCGCTACCAGTCCTGCTACCACAACCCTCGGTCTGGCTCGA
Found at i:30130346 original size:26 final size:26
Alignment explanation
Indices: 30130308--30130360 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30130298 CTGGTTCGAT
30130308 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30130334 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30130360 C
1 C
30130361 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30130923 original size:342 final size:343
Alignment explanation
Indices: 30130494--30131220 Score: 886
Period size: 342 Copynumber: 2.1 Consensus size: 343
30130484 GTCTGATCTA
* * * * * **
30130494 AGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGTGCTGAGCTGG
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGCACTGAGCTGG
* * *
30130558 CCGAAAAGGCATAATGCGTAAGCCGGGGATCAGCCCGATC-CCTCTCTGCATGCTGTCGGTCTCA
66 CCGAAAAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCTCC-CTCTGCATGCTGCCAGTCTCA
* * *
30130622 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACC
130 CTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACC
* * * * **
30130687 CACGAAATGGGCGTGCGAGTACTAAGCTGGTCGGAGAGGTAGAATGCGTAAGCCAAGAATCGGCC
195 CACGAAATGGGCGTACGAGCACTAAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAAGAATCAACC
* * * *
30130752 CGATCCCCCCTGCATGCTGCCAAACCTTCT-GTCACAACCCTTGGTCCGGCCTGATCTTAGACT-
260 CGATCCCCCCTGCATGCTACCAAACCTACTACT-ACAACCCTCGGTCCGGCCTGATCTTAGACTG
30130815 GGAATGAACTCCATATGCTT
324 GGAATGAACTCCATATGCTT
** * *
30130835 AGACTGGGGATGAACTTAGTATGCATAAGTCAACCCACGAAACGAGCATACAGGCACTGAGCTGG
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGCACTGAGCTGG
* * * * * **
30130900 CTGAAGAGGCATAATGTGTAAGCCGAGGATCGGCCCGATCTCCCTCTGCGTGCTGCCAGTCTTGC
66 CCGAAAAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCTCCCTCTGCATGCTGCCAGTCTCAC
* * *
30130965 TGCCACAACCCTCGATTTGGTTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCC
131 TACCACAACCCTCGATCTGGCTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * ** *
30131030 ATGAAATGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAACCC
196 ACGAAATGGGCGTACGAGCACTAAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAAGAATCAACCC
* * ** * * * * * *
30131095 GATCCCTCTTGTGTGTTACCGATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
261 GATCCCCCCTGCATGCTACCAAACCTACTACTACAACCCTCGGTCCGGCCTGATCTTAGACTGGG
*
30131160 AATGAACTCCGTATGCTT
326 AATGAACTCCATATGCTT
* *
30131178 AGACTGGAGATGAACTCCGTATGCCTATGTCAACCCATGAAAC
1 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
30131221 AAGTGGGCGG
Statistics
Matches: 320, Mismatches: 62, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
341 5 0.02
342 256 0.80
343 59 0.18
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (343 bp):
AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGCACTGAGCTGG
CCGAAAAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCTCCCTCTGCATGCTGCCAGTCTCAC
TACCACAACCCTCGATCTGGCTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAATGGGCGTACGAGCACTAAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAAGAATCAACCC
GATCCCCCCTGCATGCTACCAAACCTACTACTACAACCCTCGGTCCGGCCTGATCTTAGACTGGG
AATGAACTCCATATGCTT
Found at i:30131190 original size:26 final size:26
Alignment explanation
Indices: 30131149--30131201 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30131139 CTGGTCTGAT
30131149 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30131175 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
30131201 C
1 C
30131202 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30131394 original size:26 final size:26
Alignment explanation
Indices: 30131358--30131410 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
30131348 CTGATCCAAT
30131358 CTCAGACATGGAATGAACTCCGTATG
1 CTCAGACATGGAATGAACTCCGTATG
30131384 CTCAGACATGGAATGAACTCCGTATG
1 CTCAGACATGGAATGAACTCCGTATG
30131410 C
1 C
30131411 CTAAGCCCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (26 bp):
CTCAGACATGGAATGAACTCCGTATG
Found at i:30131887 original size:26 final size:26
Alignment explanation
Indices: 30131858--30131910 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30131848 CCGGTCCGAT
*
30131858 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30131884 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30131910 C
1 C
30131911 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30132750 original size:26 final size:26
Alignment explanation
Indices: 30132721--30132773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30132711 CTGATCCGAT
*
30132721 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
30132747 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30132773 C
1 C
30132774 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30133468 original size:26 final size:26
Alignment explanation
Indices: 30133430--30133482 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30133420 GGCTCAAAAT
30133430 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30133456 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30133482 C
1 C
30133483 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30133760 original size:21 final size:21
Alignment explanation
Indices: 30133736--30133789 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
30133726 CTGCGTGCTG
*
30133736 TCGGTCTTGCTGCCACAACCC
1 TCGGTCTCGCTGCCACAACCC
*
30133757 TCGGTC-CGACTGCCACAACGC
1 TCGGTCTCG-CTGCCACAACCC
* *
30133778 TCAGTCTGGCTG
1 TCGGTCTCGCTG
30133790 GGGCTTAGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.15, C:0.39, G:0.24, T:0.22
Consensus pattern (21 bp):
TCGGTCTCGCTGCCACAACCC
Found at i:30133979 original size:26 final size:26
Alignment explanation
Indices: 30133950--30134002 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30133940 CAAGTCCGAT
30133950 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
30133976 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30134002 C
1 C
30134003 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30134788 original size:367 final size:367
Alignment explanation
Indices: 30133918--30134761 Score: 946
Period size: 367 Copynumber: 2.3 Consensus size: 367
30133908 GTGCTGTCGA
* * * ** *
30133918 TCCTACTATCGCAGCCCTCGGTCAAGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * ** *
30133983 -TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGTAGGCTG
66 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACTG
* ** * ** *
30134047 GAGGGGCATACGGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCGTTGC
130 GAGAGGCATAATGCGCAAGCCAGGGATCAACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGC
* * * * *
30134112 CTGTCTTGCTGCCACAACCCTCGATTCAGTTGGGGCTTAGACATAGATTGAACTTCGTATGCCTA
195 CGGTCCTGCTGCCACAACCCTCGATTCAGCTGGGGCTTAGACATAGAATGAACTCCGTATGCCTA
* * * * ** **
30134177 AGCCAACCCAGGAAATAAGCATACAGGCATTCGGTCGATCGAAGAGGCAGAATCGTAAGCCGGGG
260 AGCCAACCCAGGAAAGAAGCATACAGGCACTCAGTCGACCGAAGAGGCAGAATCACAAGCCAAGG
30134242 ATCAACCTGGTCCCCTCCTGCGTGCTGCCAATCCTGCTACTGG
325 ATCAACCTGGTCCCCTCCTGCGTGCTGCCAATCCTGCTACTGG
* * * * * * *
30134285 TCCTGCTACCGCGACCCTCTGTCCGGTCCAATCTTAGACTGGGAATGAACACTGCAGGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
30134350 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGACTGG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACTGG
* * *
30134415 AGAGGCATAATGTGCAAGCCAGGGATCAGCCCGATCCCCCTCTGC-TAGCTACCGATCCCGCTGT
131 AGAGGCATAATGCGCAAGCCAGGGATCAACCCGATCCCCCTCTGCGT-GCTACCGATCCCGCTGC
* * * *
30134479 CGGTCCTGCTGCCACAACCTTATG-TTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
195 CGGTCCTGCTGCCACAACCCT-CGATTCAGCTGGGGCTTAGACATAGAATGAACTCCGTATGCCT
* * * * * * *
30134543 AAGCCAACCCATGAAACGAA-CGTGCGGGCACTCATTCGGCCGGAGAGGCAGAATGCACAAGCCA
259 AAGCCAACCCAGGAAA-GAAGCATACAGGCACTCAGTCGACCGAAGAGGCAGAAT-CACAAGCCA
** * ** * * *
30134607 AGGATTGGATC-GGT-CTGT-CTCGCGTGCTGTCGATCCTGCTGCTGG
322 AGGA-TCAACCTGGTCCCCTCCT-GCGTGCTGCCAATCCTGCTACTGG
** * * * * *
30134652 TCCTGCTGTCGCAACCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
30134717 ATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGT
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
30134762 ATGGGTGCTG
Statistics
Matches: 392, Mismatches: 78, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
366 3 0.01
367 370 0.94
368 16 0.04
369 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (367 bp):
TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACTGG
AGAGGCATAATGCGCAAGCCAGGGATCAACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCC
GGTCCTGCTGCCACAACCCTCGATTCAGCTGGGGCTTAGACATAGAATGAACTCCGTATGCCTAA
GCCAACCCAGGAAAGAAGCATACAGGCACTCAGTCGACCGAAGAGGCAGAATCACAAGCCAAGGA
TCAACCTGGTCCCCTCCTGCGTGCTGCCAATCCTGCTACTGG
Found at i:30135791 original size:26 final size:26
Alignment explanation
Indices: 30135774--30135840 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
30135764 TAGACTGGGA
30135774 ATGAACTCCGTATGCTTAGATTAGGG
1 ATGAACTCCGTATGCTTAGATTAGGG
*
30135800 ATGAACTCTGTATGCTTAGATTAGGG
1 ATGAACTCCGTATGCTTAGATTAGGG
30135826 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
30135841 CTAAGTCAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGATTAGGG
Found at i:30136026 original size:26 final size:26
Alignment explanation
Indices: 30135997--30136049 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30135987 CCGATCAGAT
**
30135997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
30136023 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
30136049 C
1 C
30136050 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:30136360 original size:26 final size:26
Alignment explanation
Indices: 30136322--30136374 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30136312 CCAGTTCGAT
30136322 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30136348 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30136374 C
1 C
30136375 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30136650 original size:159 final size:157
Alignment explanation
Indices: 30136348--30136850 Score: 372
Period size: 159 Copynumber: 3.2 Consensus size: 157
30136338 ACTCCGTATG
* * * *
30136348 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA-TGAGCGTGCG-GTCACTC
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAG-GCGTGCGAG-CGCTC
* * * * * * ** * * * * * * *
30136410 AGCCAATCGGAGAGGTAGAATGCGTAAGCCGGGGATCAACCTGGTTCCCCCTTACATGCTATCGA
63 AGTCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATC-AGCTCGATCCCCCCTGCGTGCTGTCGA
* * ** *
30136475 TCCTACTACCGTAACCCTTAGTCCAGTCTGAT
127 TCCCACTGCCACAACCCTCAGTCC-GTCTGAT
* * * *
30136507 CTTAGATTGGGAATGAACTCCGTATGCGTAAG-TCAACCCACGAAAC-GAGCGTGCGGGCGCTGA
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACAG-GCGTGCGAGCGCTCA
* * * * * ** *
30136570 GTCGGA-TGAAGAGGCATAATGCGTAAGTCGAGGATTGGCTCGATCCCCCTCTGTGTGCTGTCGA
64 GTC-GACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCCC-CTGCGTGCTGTCGA
* * **
30136634 TCCCGCTGCCACAACCCTCAGTCCGGCTGGGG
127 TCCCACTGCCACAACCCTCAGTCCGTCT-GAT
* *
30136666 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCGCGAAACAGGCGTGCGAGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAGGCGTGCGAGCGCTCAG
* *
30136730 TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCTCCTGCGTGCTGTCGATCC
65 TCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCC
* * ** * *
30136795 TACTGTCGTAACCCTCGGTCTGGTCTGAT
130 CACTGCCACAACCCTCAGTC-CGTCTGAT
* * *
30136824 CTTAGACTGGAAATGAACTCTGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
30136851 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 63, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
157 1 0.00
158 67 0.25
159 195 0.73
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAGGCGTGCGAGCGCTCAGT
CGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCCC
ACTGCCACAACCCTCAGTCCGTCTGAT
Found at i:30136853 original size:26 final size:26
Alignment explanation
Indices: 30136824--30136876 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30136814 CTGGTCTGAT
*
30136824 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
30136850 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
30136876 C
1 C
30136877 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:30136935 original size:13 final size:13
Alignment explanation
Indices: 30136917--30136941 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30136907 CATTCAGCCA
30136917 GTCGAAGAGGCAG
1 GTCGAAGAGGCAG
30136930 GTCGAAGAGGCA
1 GTCGAAGAGGCA
30136942 TAATGCGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.44, T:0.08
Consensus pattern (13 bp):
GTCGAAGAGGCAG
Found at i:30137244 original size:25 final size:25
Alignment explanation
Indices: 30137205--30137254 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
30137195 CGGTCTGATC
30137205 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
*
30137230 TTAGACATGGG-ATGAACTTCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
30137255 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (25 bp):
TTAGACTGGGAATGAACTCCGTATG
Found at i:30143364 original size:26 final size:26
Alignment explanation
Indices: 30143328--30143380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30143318 CCAGTCTGAT
30143328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30143354 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30143380 C
1 C
30143381 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30143733 original size:26 final size:26
Alignment explanation
Indices: 30143704--30143756 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30143694 TCGATCCGAT
*
30143704 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
30143730 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
30143756 C
1 C
30143757 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:30145175 original size:866 final size:868
Alignment explanation
Indices: 30143123--30145175 Score: 2398
Period size: 878 Copynumber: 2.4 Consensus size: 868
30143113 CAGGTCCCTC
* * * * * * * *
30143123 TCTGCGTGCTACCGGTCCCGCTACCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAAC
1 TCTGCATGCTACCGATCCCCCTGCCACAACCCCCGGTCCAGCTAGGGCTTAGACATGGAATGAAC
* * *
30143188 TCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGCTGGAA-AGACAAAA
66 TCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGAC-GGAAGAGGCAGAA
* * * *
30143252 TGCGCAAGCC-AGGGATCGCCCCGATCCCCCTTACGTGCTGCCGATCCTACTGTCGCAACCCTCG
130 TGCGCAAGCCGA-GGATCGCCCGGA-CCCCCTTGCGTGCTGTCGATCCTACTATCGCAACCCTCG
* * *
30143316 GTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGC
193 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
* *
30143381 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCCGGTCGGAGAGGCA
258 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCG-AGAGGCCGATCGGAGAGGCA
* * * * * * *
30143446 TAATGAGCAAGCCAGGGATTAGCCCGGTTCCCCTCCATGTGCTACCGATCTAGCTATCGATCTTA
322 TAATGAGCAAGCCAGGGATCAACCCGGTTCCCCTCCACGGGCTACCGATCCAGCTATCAATCCTA
* * * * ** *
30143511 CTGCCACAACCTTCAGTCCAGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACC
387 CTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACGCCATATGCCTAAGCCAACC
* * *
30143576 CATGAAATGAACGTACGGGTGCTCAACCGGCCGGAGAGGCAGAATACACAAGCCGAGGATCGGTC
452 CACGAAATGAACGTACGAGCGCTCAACCGGCCGGAGAGGCAGAATACACAAGCCGAGGATCGGTC
* * * * * *
30143641 CGGTCCCCCTCTACGTGTTGTCGATCCTGCTGCTGGTCCTACCATCTCAACCCTCGATCCGATCT
517 CGATCCCCCTCTACATGCTGTCGATCCCGCTGCTGGTCCTACCATCGCAACCCTCGATCCAATCT
*
30143706 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCAAACCCAC
582 TAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATAAACTCCGTATGCCTAAGCAAACCCAC
* * * * * * *
30143771 GAAACGAGCGTGCGGGCGCTCAGCCGACTAAAGAGGCAGAATGCGCAAGTCAAAGATCGACCCAG
647 AAAACGAGCGTACGGGCGCTCAGCCGACTAAACAGGCAAAATACACAAGCCAAAGATCGACCCAG
** * * *
30143836 TCCTCCCGTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGA
712 TCCTCCC--ACGTGC-GTCGA--C-GCTA-C-CAACCCTCAATCCGATCCAATATTAGACTGGGA
* * *
30143901 ATGAACTTCGTATGCCTAATTCAACCCACGAAATGAGCGTGTGGGCACTGAGCCAGTCGGAAAGG
769 ATGAACTTCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCAGTCAGAAAGG
* * * *
30143966 CATAATGCGCAAGTCGGGGTTCGGCCTGGTCCCCA
834 CATAATGCGCAAGTCGAGGATCGGCCCGCTCCCCA
* * * *
30144001 TCTGCATGCTGCCGGTCCCCCTGCCATAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAAC
1 TCTGCATGCTACCGATCCCCCTGCCACAACCCCCGGTCCAGCTAGGGCTTAGACATGGAATGAAC
* * *
30144066 TCCCTATGCCTAAGCCAACACATGAAACGGGCGTACGGGTGCTCAATCGATCGG-AGAGGCAGAA
66 TCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGA-CGGAAGAGGCAGAA
* * * * * *
30144130 TGTGCAAGCCGGGGATTGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGA
130 TGCGCAAGCCGAGGA-TCGCCCGGACCCCCTTGCGTGCTGTCGATCCTACTATCGCAACCCTCGA
* * * * * *
30144195 TCCGATCCGATCTTAGATTAGGAATTAACTCGGTATGCTTAGACTGGGGATGAACTCCGTATGCC
194 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
* * * ** * * * * *
30144260 AAAGTCAACCCCCGAAATGAATGTGCGGGCACTCAACTGGTCGGAGAGGCTGATCGGAGAGGCAT
259 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CCGAGAGGCCGATCGGAGAGGCAT
* * * ** * * *
30144325 AATGCGCAAGCCAGGGATCAACCCGGTTCCCTTCTACGGGCTGTCGATCCCGCTGTCAATCCTGC
323 AATGAGCAAGCCAGGGATCAACCCGGTTCCCCTCCACGGGCTACCGATCCAGCTATCAATCCTAC
30144390 TGCCACAACCCTCAG-CCTAGCTAGGGCTTAGACATGGAATGAACGCCATATGCCTAAGCCAACC
388 TGCCACAACCCTCAGTCC-AGCTAGGGCTTAGACATGGAATGAACGCCATATGCCTAAGCCAACC
* * * * *
30144454 CACGAAATGAATGTGCGAGCGCTTAGCCGGTCGGAGAGGCAGAATACACAAGCCGAGGATCGGTC
452 CACGAAATGAACGTACGAGCGCTCAACCGGCCGGAGAGGCAGAATACACAAGCCGAGGATCGGTC
* * *
30144519 CGAT-CCCCTCCTGCATGCTGTCGATCCCGTTGCTGGTCCTGCCATCGCAACCCTCGATCTGGTC
517 CGATCCCCCT-CTACATGCTGTCGATCCCGCTGCTGGTCCTACCATCGCAACCCTCGA-----TC
* * * *
30144583 CAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCTGTATGCCTAAGCCA
576 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATAAACTCCGTATGCCTAAGCAA
** **
30144648 ACCCACAAAACGAGCGTACGGGCGCTCAGCCGA-TCGGACAGGCAAAATACACAAGCCAGGGATC
641 ACCCACAAAACGAGCGTACGGGCGCTCAGCCGACT-AAACAGGCAAAATACACAAGCCAAAGATC
* * * *
30144712 GGCCCCGTCC-CCC-C-TGC-T-G-C-C-A-TAACCCTCAATCCGATCCGATATTAGACTGGGAA
705 GACCCAGTCCTCCCACGTGCGTCGACGCTACCAACCCTCAATCCGATCCAATATTAGACTGGGAA
* * *
30144768 TGAACTTCGTATGCCTAAGTT-AACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGTCAGAGAGG
770 TGAACTTCGTATGCCTAA-TTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCAGTCAGAAAGG
30144832 CATAATGCGCAAGTCGAGGATCGGCCCGCTCCCTC-
834 CATAATGCGCAAGTCGAGGATCGGCCCGCTCCC-CA
* * * * *
30144867 TCTAG-GTGTTATCGATCCCGCTGCCACAACCCCCGGTCC-GACTTGGGCTTAGACATGGAATGA
1 TCT-GCATGCTACCGATCCCCCTGCCACAACCCCCGGTCCAG-CTAGGGCTTAGACATGGAATGA
** * * * *
30144930 ACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCAGGCGCTCAGCCGACGGAAGAGGCAGA
64 ACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGACGGAAGAGGCAGA
* * * *
30144995 ATGCGCAAGCCGAGGATCGACTCGGACCCCCCTGCGTGCTATCGATCCTACTATTGCAACCCTCG
129 ATGCGCAAGCCGAGGATCG-CCCGGACCCCCTTGCGTGCTGTCGATCCTACTATCGCAACCCTCG
* * * *
30145060 ATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATACTTAGACTAGGGATGAACTCCGTATGC
193 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
* ** *
30145125 CTAAGTTAACCCACGAAACGAGCGTGTAGGCGCTCAGCCGACCAGAGAGGC
258 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-GAGAGGC
30145176 AGGACGCGCA
Statistics
Matches: 987, Mismatches: 168, Indels: 52
0.82 0.14 0.04
Matches are distributed among these distances:
865 7 0.01
866 356 0.36
867 4 0.00
869 1 0.00
870 1 0.00
872 1 0.00
875 1 0.00
876 1 0.00
877 8 0.01
878 473 0.48
879 10 0.01
882 4 0.00
883 120 0.12
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (868 bp):
TCTGCATGCTACCGATCCCCCTGCCACAACCCCCGGTCCAGCTAGGGCTTAGACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGACGGAAGAGGCAGAAT
GCGCAAGCCGAGGATCGCCCGGACCCCCTTGCGTGCTGTCGATCCTACTATCGCAACCCTCGATC
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAGAGGCCGATCGGAGAGGCATAAT
GAGCAAGCCAGGGATCAACCCGGTTCCCCTCCACGGGCTACCGATCCAGCTATCAATCCTACTGC
CACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACGCCATATGCCTAAGCCAACCCACG
AAATGAACGTACGAGCGCTCAACCGGCCGGAGAGGCAGAATACACAAGCCGAGGATCGGTCCGAT
CCCCCTCTACATGCTGTCGATCCCGCTGCTGGTCCTACCATCGCAACCCTCGATCCAATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACATGAAATAAACTCCGTATGCCTAAGCAAACCCACAAAA
CGAGCGTACGGGCGCTCAGCCGACTAAACAGGCAAAATACACAAGCCAAAGATCGACCCAGTCCT
CCCACGTGCGTCGACGCTACCAACCCTCAATCCGATCCAATATTAGACTGGGAATGAACTTCGTA
TGCCTAATTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCAGTCAGAAAGGCATAATGCGCAA
GTCGAGGATCGGCCCGCTCCCCA
Found at i:30145828 original size:26 final size:26
Alignment explanation
Indices: 30145790--30145842 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30145780 GGCTCAAACT
30145790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30145816 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30145842 C
1 C
30145843 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30146168 original size:26 final size:26
Alignment explanation
Indices: 30146132--30146184 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30146122 CCAATCTGAT
*
30146132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30146158 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30146184 C
1 C
30146185 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30146370 original size:26 final size:26
Alignment explanation
Indices: 30146341--30146393 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30146331 CCGGTCTGAT
30146341 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
30146367 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30146393 C
1 C
30146394 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30146661 original size:159 final size:158
Alignment explanation
Indices: 30146367--30146781 Score: 369
Period size: 159 Copynumber: 2.6 Consensus size: 158
30146357 ACTCCGTATG
* * *
30146367 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGTGCTCAGT
1 CTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGT
* * * * * * * *
30146432 GGGTCGGAGCGGTAGAATGTGCGAGCCGGGGATTGAGCCGATCCCCCCCTTTGTGATGTCGATCC
66 GAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTCAGCCGATCCCCCCCTGTGTGATATCGATCC
*
30146497 TGCTGCCACAACCCTCAGTCTGGTCCCAT
131 CGCTGCCACAACCCTC-GTCTGGTCCCAT
* * *
30146526 CTTAGAC-TGGGAATAAATTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-AGGCGCTGA
1 CTTAGACAT-GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGA-GCGCTCA
* * * * *
30146589 GCT-AGTCGGAGAGGCATAATGCGCAAGCCGGGGA-TCAGCCCGGTCCCCCTCTGTGTGCTATTG
64 G-TGAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTCAG-CCGATCCCCCCCTGTGTGATATCG
* * *
30146652 ATCCCGCTGCCACAACCCTCGTCT-G-ACTAGGG
127 ATCCCGCTGCCACAACCCTCGTCTGGTCCCA--T
* ** * * * * * *
30146684 GTTAGACATGGAATTTACTCCCTATGCCTAAGCCAACCCATGAAA-CAGGCGTACGGGCGCTCAG
1 CTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGAGCGCTCAG
* * * *
30146748 CCG-GCCAGAGAGGCAGAATGCACAAGCCGGGGAT
65 -TGAGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT
30146782 CGGCCCGGTT
Statistics
Matches: 205, Mismatches: 40, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
156 2 0.01
157 2 0.01
158 83 0.40
159 117 0.57
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGT
GAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTCAGCCGATCCCCCCCTGTGTGATATCGATCC
CGCTGCCACAACCCTCGTCTGGTCCCAT
Found at i:30146862 original size:158 final size:158
Alignment explanation
Indices: 30146488--30146868 Score: 354
Period size: 158 Copynumber: 2.4 Consensus size: 158
30146478 CCCTTTGTGA
*** * * *
30146488 TGTCGATCCTGCTGCCACAACCCTCAGTCTGGTCCCATCTTAGACTGGGAATAAATTTCGTATGC
1 TGTCGATCCTGCTGCCACAACCCTCAGTCTGGTTAGATCTTAGACT-GGAATAAACTCCATATGC
* * * * * * * * *
30146553 CTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAGCTAGTCGGAGAGGCATAATGCGCAAGCC
65 CTAAGCCAACCCACGAAAAGAGCGTACAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGCC
** *
30146618 GGGGATCAGCCCGGTCCCCCTCTGTGTGC
130 GGGGATCAGCCCGGTCCCCCTCTACGTAC
* * * ** *** ** *
30146647 TATTGATCCCGCTGCCACAACCCTC-GTCTGACTAGGGGTTAGACATGGAATTTACTCCCTATGC
1 TGTCGATCCTGCTGCCACAACCCTCAGTCTGGTTAGATCTTAGAC-TGGAATAAACTCCATATGC
* * *
30146711 CTAAGCCAACCCATGAAACAG-GCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCACAAGC
65 CTAAGCCAACCCACGAAA-AGAGCGTACAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGC
* **
30146775 CGGGGATCGGCCCGGTTTCCC-CTACGTAC
129 CGGGGATCAGCCCGGTCCCCCTCTACGTAC
* * * *
30146804 TGTCGATCCTACTGCCGCAACCCTCAGTCTGGTTTGATCTTAGACTGAGAATGAACTCCATATGC
1 TGTCGATCCTGCTGCCACAACCCTCAGTCTGGTTAGATCTTAGACTG-GAATAAACTCCATATGC
30146869 TTAGATTAGT
Statistics
Matches: 170, Mismatches: 48, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
157 27 0.16
158 119 0.70
159 24 0.14
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (158 bp):
TGTCGATCCTGCTGCCACAACCCTCAGTCTGGTTAGATCTTAGACTGGAATAAACTCCATATGCC
TAAGCCAACCCACGAAAAGAGCGTACAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCG
GGGATCAGCCCGGTCCCCCTCTACGTAC
Found at i:30147888 original size:159 final size:159
Alignment explanation
Indices: 30147599--30148090 Score: 384
Period size: 159 Copynumber: 3.1 Consensus size: 159
30147589 CTTAGACATT
* * * *
30147599 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAGCCAGTCGGAGA
1 GAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAGCCAGCCGAAGA
* * * * * * *
30147664 GGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTTGTGTGCTGTCGATCCTACTATCACA
66 GGCAAAATGCACAAGCCGAGGATCGACCCGATCCCCTCTTGCGTGCAGTCGATCCCACTACCACA
30147729 AACCTCGGTCCGATCTGATCTTAGACTGG
131 AACCTCGGTCCGATCTGATCTTAGACTGG
* * * * * *
30147758 GAATAAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCTGGCGCTGAGCC-GACCGAAG
1 GAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAGCCAG-CCGAAG
* * * * **
30147822 AGGCATAATGCGCAAGCTGAGGATCGACCCGATCCCC-CTCTGCGTGCAGTCGGTCCCGTTACCA
65 AGGCAAAATGCACAAGCCGAGGATCGACCCGATCCCCTCT-TGCGTGCAGTCGATCCCACTACCA
* * *
30147886 CAACCCTCGGTCTG-GCTGGGA-CTTAGACAT-G
129 CAAACCTCGGTCCGATCT--GATCTTAGAC-TGG
* * * * * * * ** * *** *
30147917 GAATGAACTCCCTAGGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGTAAAAAA
1 GAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAGCCAGCCGAAGA
* ** * * * * * ** * *
30147982 GGCAGAATGCGTAAGCCGAGGATCGGCCTGGTCCCC-CTTGTGTGCCGTCGATCCTGCTATCGCA
66 GGCAAAATGCACAAGCCGAGGATCGACCCGATCCCCTCTTGCGTGCAGTCGATCCCACTACCACA
* * * *
30148046 ACCCTTGATCCGATCCGATCTTAGACTGG
131 AACCTCGGTCCGATCTGATCTTAGACTGG
*
30148075 GAATGAACTCCGTATG
1 GAATAAACTCCGTATG
30148091 GTTAGATTAT
Statistics
Matches: 262, Mismatches: 62, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 55 0.21
159 200 0.76
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAGCCAGCCGAAGA
GGCAAAATGCACAAGCCGAGGATCGACCCGATCCCCTCTTGCGTGCAGTCGATCCCACTACCACA
AACCTCGGTCCGATCTGATCTTAGACTGG
Found at i:30148095 original size:26 final size:26
Alignment explanation
Indices: 30148066--30148115 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
30148056 CGATCCGATC
30148066 TTAGACT-GGGAATGAACTCCGTATGG
1 TTAGACTAGGG-ATGAACTCCGTATGG
* *
30148092 TTAGATTATGGATGAACTCCGTAT
1 TTAGACTAGGGATGAACTCCGTAT
30148116 CCCTAAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (26 bp):
TTAGACTAGGGATGAACTCCGTATGG
Found at i:30148465 original size:158 final size:158
Alignment explanation
Indices: 30148263--30148763 Score: 411
Period size: 158 Copynumber: 3.2 Consensus size: 158
30148253 CCGACTGGCG
*** * *
30148263 CTTAGAC-ATGGAATAAACTCCGTATAATTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 CTTAGACTA-GGAATAAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCAGGTGCTCAG
*** * * * * *
30148327 CCCG-TCGGAGAGGCAGAATATGTAAGCTGGGGATCTGTCCAG-TCCCCCCT-TCATGCTGTCGG
65 -CCGATCGGAGAGGCAGAATACACAAGCCGGGGA-CCGGCCAGATCCCCCATGT-ATGCTGTCGA
* * *
30148389 TCCTGTTATCCG-AACCCTCGGTCC-AGTCCAAT
127 TCCTGCT-GCCGCAACCCACGGTCCGA-TCCAAT
* *
30148421 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCAGGTGCTCAGC
** * * * *
30148486 CGATCGTCGAGGCAGAATGCACAAGCCGGGGACCGGCCTGATCCCTCATGTGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATACACAAGCCGGGGACCGGCCAGATCCCCCATGTATGCTGTCGATCCT
* *
30148551 GCTGCTGCAACCCACGGTCCGATCTAAT
131 GCTGCCGCAACCCACGGTCCGATCCAAT
* * * * *
30148579 CTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTACAGGCGTTGAGT
1 CTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCAGGTGCTCAGC
* * * * ** * * * * * ** *
30148644 CGGTCGGAGAGGTAGAATGCGCAAGCTAGGGATCGACCCGATCCCTCTTGCGTGCTGCCGATCCT
66 CGATCGGAGAGGCAGAATACACAAGCCGGGGACCGGCCAGATCCCCCATGTATGCTGTCGATCCT
* * * * * * *
30148709 GCTACCGCAGCCCTCGGGCTGGTCAAAT
131 GCTGCCGCAACCCACGGTCCGATCCAAT
* * *
30148737 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTAGGAATAAACTCCGTATGC
30148764 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 57, Indels: 12
0.80 0.16 0.03
Matches are distributed among these distances:
157 10 0.04
158 267 0.95
159 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCAGGTGCTCAGC
CGATCGGAGAGGCAGAATACACAAGCCGGGGACCGGCCAGATCCCCCATGTATGCTGTCGATCCT
GCTGCCGCAACCCACGGTCCGATCCAAT
Found at i:30148773 original size:26 final size:26
Alignment explanation
Indices: 30148737--30148789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30148727 CTGGTCAAAT
30148737 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
30148763 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30148789 C
1 C
30148790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30149499 original size:26 final size:25
Alignment explanation
Indices: 30149458--30149509 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
30149448 GGCTCAAAAT
30149458 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
30149483 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
30149509 C
1 C
30149510 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:30149963 original size:159 final size:156
Alignment explanation
Indices: 30149493--30149982 Score: 518
Period size: 159 Copynumber: 3.1 Consensus size: 156
30149483 CTTAGACATT
*
30149493 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGA
* *
30149558 GGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGTGTGCTGTCAATCCTACTATCACA
66 GGCAGAATGCGCAAG-C-GGGATCGGCCCGGTCCCCCCCTGTGTGCTGTTAATCCTGCTATCACA
* * *
30149622 ACCCTTGGTCTGATGTGATCTTAGACTGG
129 ACCCTCGATCTGAT-TGATCTTAGACTAG
* * * * * * *
30149651 GAATAAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCTGGCGCTGAGCCGACCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGA
* * * * * * *
30149716 GGCATAAT-CTGCAAGCTGAGGATCGGCCCGGACCCCCTCTGCGTGCTGTCAGTCCTGCTACCAC
66 GGCAGAATGC-GCAAGC-G-GGATCGGCCCGGTCCCCCCCTGTGTGCTGTTAATCCTGCTATCAC
* * **
30149780 AACCCTCGATCTGGCTGGGGCTTAGAC-ATG
128 AACCCTCGATCT-GATTGATCTTAGACTA-G
* * * * * *
30149810 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAGCCGATCAAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGA
* * * * *
30149875 GGTAGAATGCGCAAGTCGGGAATCAGCCCGGTCCCCCCCTGTGTGCCGTTGATCCTGCTATCGCA
66 GGCAGAATGCGCAAG-CGGG-ATCGGCCCGGTCCCCCCCTGTGTGCTGTTAATCCTGCTATCACA
**
30149940 ACCCTCGATCCAATTCGATCTTAGACTAG
129 ACCCTCGATCTGATT-GATCTTAGACTAG
*
30149969 GAATGAACTTCGTA
1 GAATGAACTCCGTA
30149983 CGCTTAGATT
Statistics
Matches: 266, Mismatches: 56, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 84 0.32
159 174 0.65
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGA
GGCAGAATGCGCAAGCGGGATCGGCCCGGTCCCCCCCTGTGTGCTGTTAATCCTGCTATCACAAC
CCTCGATCTGATTGATCTTAGACTAG
Found at i:30150366 original size:159 final size:159
Alignment explanation
Indices: 30150125--30150659 Score: 460
Period size: 158 Copynumber: 3.4 Consensus size: 159
30150115 GTGCTGTCGG
* * * **
30150125 TCCTGCTGCCACAACCCTCTGTCCGGT-TGGGGCTTAGAC-ATGGAATGAACTCCGTATGCCTAA
1 TCCTGCTGCCGCAACCCTCGGTCCTGTGT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAA
* * * * * * **
30150188 GCCAACCCACAAAATGAGCGTACGGGCGCTCAGCCCATCGGAGAGGCAGAATATGCAAGCTAGGG
64 GTCAACCTACGAAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCTAGGG
* * *
30150253 ATCGGTCTAGTCCCTCCCTTCGTGCTGCCAA
129 ATCGGACTAGTCCCTCCCTTCGTGCTACCGA
* * *
30150284 TCCTGCTGCCGGAACCCTCGGTCCAGTGTGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGT
1 TCCTGCTGCCGCAACCCTCGGTCCTGTGTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * ** *
30150349 CAACCTACGAAACGAGCGTGCCGGCGCTTAGCTGACCGGAGAGGCAGAATGCGCAAG-TCGGGGA
66 CAACCTACGAAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCT-AGGGA
* * ** * *
30150413 AC-AACCCGATCCC-CCCTGCGTGCTATCGA
130 TCGGACTAG-TCCCTCCCTTCGTGCTACCGA
* * ** * *
30150442 TCCTGCTGCTGCAACCCACGGT-CTGATCCGATCTTAGACTAGGAATGAACTACTTATGCCTAAG
1 TCCTGCTGCCGCAACCCTCGGTCCTG-TGTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
** * * * *
30150506 TCAACCTACGAAACGAGCGTACGGGCATTGAGTCAACCGAAGAGGTAGAATGCGCAAGCTAGGGA
65 TCAACCTACGAAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCTAGGGA
* *
30150571 TCGGCCTGGTCCCT--CTTGCGTGCTACCGA
130 TCGGACTAGTCCCTCCCTT-CGTGCTACCGA
* * * * * *
30150600 TCCTACTACCGCAACCCTCAGG-CTTG-GTTCAATCTTAGACTGGGAATGAACTCTGTATGC
1 TCCTGCTGCCGCAACCCTC-GGTCCTGTG-T-GATCTTAGACTAGGAATGAACTCCGTATGC
30150660 TTAGACTGGG
Statistics
Matches: 295, Mismatches: 68, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 149 0.51
159 140 0.47
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
TCCTGCTGCCGCAACCCTCGGTCCTGTGTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
CAACCTACGAAACGAGCGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCTAGGGAT
CGGACTAGTCCCTCCCTTCGTGCTACCGA
Found at i:30150684 original size:26 final size:26
Alignment explanation
Indices: 30150633--30150685 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30150623 TTGGTTCAAT
*
30150633 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
30150659 CTTAGACTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
30150685 C
1 C
30150686 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:30151348 original size:26 final size:26
Alignment explanation
Indices: 30151310--30151362 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30151300 GGCTCAAAAT
*
30151310 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30151336 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30151362 C
1 C
30151363 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30151822 original size:26 final size:26
Alignment explanation
Indices: 30151786--30151839 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
30151776 TCGGTTCGAT
* *
30151786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
30151812 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
30151838 CT
1 CT
30151840 AAAGTCAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:30152264 original size:158 final size:159
Alignment explanation
Indices: 30151975--30152279 Score: 355
Period size: 158 Copynumber: 1.9 Consensus size: 159
30151965 CCTGCAGCCA
*
30151975 CAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCGATCCGACTCGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
** * * *
30152040 ATCAGTGTGCGGACACTCAGTCGGTTGGAGAGGCAGAATGCACAAGCTAGGGATCGACCCGATCC
66 ATCAGCATGCGGACACTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCC
* *
30152105 CCC-CTGCGTGCTGTCGATCTTGCTGCCG
131 CCCTCTACATGCTGTCGATCTTGCTGCCG
* * * *
30152133 CAACCCTCGATCTGATTCGGTCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 CAACCCTCGATCCGACTCGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * ** * * *** *
30152197 AATGAGCATTCGGGCACTGAGCCGGTCGTG-GAGTTATAATGCGCAAGCCAGGGATCGGGTCGGT
65 AATCAGCATGCGGACACTCAGCCGGTCG-GAGAGGCAGAATGCACAAGCCAGGGATCGACCCGAT
30152261 CCCCCTCTACATGCTGTCG
129 CCCCCTCTACATGCTGTCG
30152280 GTCCCCCTAT
Statistics
Matches: 120, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 107 0.89
159 12 0.10
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CAACCCTCGATCCGACTCGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ATCAGCATGCGGACACTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCC
CCCTCTACATGCTGTCGATCTTGCTGCCG
Found at i:30153265 original size:26 final size:26
Alignment explanation
Indices: 30153227--30153279 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30153217 GGCTACAAAT
*
30153227 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30153253 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
30153279 C
1 C
30153280 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30153791 original size:26 final size:26
Alignment explanation
Indices: 30153740--30153792 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30153730 CCGATCTGAT
* *
30153740 CTTAGACTTGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30153766 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30153792 C
1 C
30153793 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30155386 original size:26 final size:26
Alignment explanation
Indices: 30155347--30155399 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30155337 GGCTCAAAAT
30155347 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
30155373 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
30155399 C
1 C
30155400 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:30156389 original size:26 final size:26
Alignment explanation
Indices: 30156360--30156412 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30156350 CCGATCCGAT
30156360 CTTAGACTAGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* * *
30156386 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
30156412 C
1 C
30156413 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:30156706 original size:499 final size:496
Alignment explanation
Indices: 30155345--30157096 Score: 1798
Period size: 499 Copynumber: 3.5 Consensus size: 496
30155335 GTGGCTCAAA
30155345 ATCTTAGACT-GAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTAG-GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
30155409 CCCACGAAATGAGCGTGCGGGCGCTTAGCCAGTCGGAGAGGTAGAATGCGCAAGTTGGGGATGGC
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTC-GAAAGGTAGAATGCGCAAG-TGAGGATAGC
* * * * * * *
30155474 CGGATCCCCCCTACGTGCTGTCGATCCTTCCACCGTAACCCTCGATCTGATCCAATCTTAGACTG
128 CCGATCCCCCTTACGTGCTGTCGATCCTACTACTGCAACCCTCGATCTGATCCGATCTTAGACTG
* * * * * *
30155539 GGAATGAACTCCGTATGCATATGTCAACCCATGAAACGAGCATGCAGGCGTTGAGCCGGTCGAAG
193 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCATTGAGCCGGTCGGAG
* * * * * *
30155604 AGGCATAATGCGCAAGCCAGGGCTCGACCCTGTCCCACTCTGCATGCTGCCGGTCCTGCTACCAC
258 AGGCATAATGAGCAAGCCAGGGATCGACCC-GTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
* * * * * * * * *
30155669 ATCCCTCAGTTTGGCTGTGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCTAACCCACAAAA
322 AACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAC
* * * * * * *
30155734 TGAGGGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCC
387 GGA-CGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCC
* **
30155799 CCCTGCGTGTTGTCGATCCTGCTGCTGGTCTTACTGTCGCAACCCTCGGTCCGATCTA
451 CCCTGCGTGCTGTCGAT-C--CTGCT-G---T-C-GT---AACCCTCGGTCCGATCCG
* *
30155857 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAAGGAA-TGCCGTATGCCTAAGCCAA
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAA
* * * * * * * * *
30155921 CCTATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCACAAGTCAAGGATTGC
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAA-AGGTAGAATGCGCAAGT-GAGGATAGC
* * * *
30155986 CCCAGTCCCCCTTACGTGCTATCGATCCTACTACTGCAACCCTCGGTCTGGTCCGATCTTAGACT
128 CCGA-TCCCCCTTACGTGCTGTCGATCCTACTACTGCAACCCTCGATCTGATCCGATCTTAGACT
* * * * * * *
30156051 AGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACAAGCGTTCGGGCACTGAGCCGGCCGGA
192 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCATTGAGCCGGTCGGA
* * * * * *
30156116 GAGGCATAA-CACACAAGCCAGGGATCGACCCGGTACCCCTCTGCGTGCTACCGGTCTCACTGCC
257 GAGGCATAATGA-GCAAGCCAGGGATCGACCC-GTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCC
*
30156180 ACAACCCTCGG-TCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
320 ACAACCCTCGGTTCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-G
* * * * *
30156244 AAACGGACGTGCGGGTGCTCAACCGGCCGTAGAGGCAGAATGCACAAGCCGGGGATCGACCAGGT
383 AAACGGACGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGT
* * *
30156309 CCCCCTTGTGTGCTGTCGATCCTGCTGTCGTAACCCTTGGTCCGATCCG
448 CCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCCGATCCG
* * *
30156358 ATCTTAGACTAGGAACGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * **
30156422 CCCACGAAATGAGCGTGCGGGTGCTCAGCTAACCAGAAAGGTAGAATGCGCAAGCTGAGGATCAG
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTC-GAAAGGTAGAATGCGCAAG-TGAGGAT-AG
* * *
30156487 CCCGAT-CCCCTTACGTGCTGTCGATCCTACTATTGCAACCCTCGATCCGATCTGATCTTAGACT
127 CCCGATCCCCCTTACGTGCTGTCGATCCTACTACTGCAACCCTCGATCTGATCCGATCTTAGACT
* * * * *
30156551 GGGAATGAACT-CATTTGCCTAAGTCAACCCACGGAACGAGCGTGCCGGCATTGAGCCGATCGGA
192 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCATTGAGCCGGTCGGA
* * * *
30156615 GAGGCATAATGAGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCA
257 GAGGCATAATGAGCAAGCCAGGGATCGACCCG-TCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCA
*
30156680 CAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAA
321 CAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-GAA
* *** * * *
30156745 ACGGGCACACGGGCGCTCAGCCTACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCC
385 ACGGACGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCC
* * * * *
30156810 CCCCTGCGTGCTATCGATCCTGCTGTCGCAAACCTCAGTCC-AGTTCG
450 CCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCCGA-TCCG
*** * *
30156857 ATCTTAGACTAGGAATGAACTTTGTATGCCTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
30156921 CCCACGAAACGAGCGTGCGGGCGCTTAGCCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGG
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTC-GAAAGGTAGAATGCGCAAGTGA-GGAT-AG
* * * * * *** * * ** *
30156986 CCCGGTCCCCCTCTACGTGCTATCGGTCCCACTGCCATAACCCTCAATC-CAGTTGGGTCTTAGA
127 CCCGATCCCCCT-TACGTGCTGTCGATCCTACTACTGCAACCCTCGATCTGA-TCCGATCTTAGA
* * * *
30157050 CAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTG
190 C-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
30157097 TGGGCGGTCA
Statistics
Matches: 1031, Mismatches: 186, Indels: 56
0.81 0.15 0.04
Matches are distributed among these distances:
498 3 0.00
499 357 0.35
500 73 0.07
501 161 0.16
502 38 0.04
504 2 0.00
505 1 0.00
506 1 0.00
509 1 0.00
510 5 0.00
511 4 0.00
512 110 0.11
513 270 0.26
514 5 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (496 bp):
ATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAAGGTAGAATGCGCAAGTGAGGATAGCCCG
ATCCCCCTTACGTGCTGTCGATCCTACTACTGCAACCCTCGATCTGATCCGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCATTGAGCCGGTCGGAGAGG
CATAATGAGCAAGCCAGGGATCGACCCGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACC
CTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAACGGAC
GTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCCCCCTG
CGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCCGATCCG
Found at i:30156885 original size:158 final size:156
Alignment explanation
Indices: 30156386--30156888 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 156
30156376 ACTCCGTATG
* * * *
30156386 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG-
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
30156450 CTAACCAGAAAGGTAGAATGCGCAAGCTGAGGATC-AGCCCGAT-CCCCTTACGTGCTGTCGATC
66 CT-ACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATC
* * *
30156513 CTACTATTGCAACCCTCGATCCGATCTGAT
129 CTGCTGTCGCAACCCTCG-TCCGATC-GAT
* * * * * * ** *
30156543 CTTAGACTGGGAATGAACT-CATTTGCCTAAGTCAACCCACGGAACGAGCGTGCCGGCATTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
30156607 CGATCGGAGAGGCATAATGAGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
66 CTACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCC
* * * * * **
30156672 CGCTGCCACAACCCTCGGTTCGACTGGGG
130 TGCTGTCGCAACCCTC-GTCCGA-TCGAT
* * * ***
30156701 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCACACGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
30156765 CCTACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
65 CCTACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
30156830 TGCTGTCGCAAACCTCAGTCCAGTTCGAT
130 TGCTGTCGCAACCCTC-GTCC-GATCGAT
**
30156859 CTTAGACTAGGAATGAACTTTGTATGCCTA
1 CTTAGACTAGGAATGAACTCCGTATGCCTA
30156889 GACTGGGGAT
Statistics
Matches: 268, Mismatches: 68, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
156 64 0.24
157 23 0.09
158 105 0.39
159 76 0.28
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CTACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGTCGCAACCCTCGTCCGATCGAT
Found at i:30156900 original size:26 final size:26
Alignment explanation
Indices: 30156861--30156914 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
30156851 AGTTCGATCT
**
30156861 TAGACTAGGAATGAACTTTGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
* *
30156887 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCGTATGCC
30156913 TA
1 TA
30156915 AGCCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCC
Found at i:30156976 original size:343 final size:343
Alignment explanation
Indices: 30156545--30157265 Score: 930
Period size: 343 Copynumber: 2.1 Consensus size: 343
30156535 GATCTGATCT
* * * *
30156545 TAGACTGGGAATGAACT-CATTTGCCTAAGTCAACCCACGGAACGAGCGTGCCGGCATTGAGCCG
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCATTGAGCCG
* * * *
30156609 ATCGGAGAGGCATAATGAGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCG
66 ATCGGAGAGGCATAATGAGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTATCGATCCCA
** *
30156674 CTGCCACAACCCTCGGTTC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 CTGCCACAACCCTCAATCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* ** * *
30156738 ACACGAAACGGGCACACGGGCGCTCAGCCTACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAC
195 ACACGAAACGGGCACACGGGCGCTCAGCCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* * *
30156803 CCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAAACCTCAGTCCAGT-TCGATCTTAGACT
260 CCGGTCCCCCCTGCGTGATATCAATCCTGCTGTCGCAAACCTCAGTCCGGTCT-GATCTTAGACT
***
30156867 AGGAATGAACTTTGTATGCC
324 AGGAATGAACTCCATATGCC
* * *
30156887 TAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTT-AGCC
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGC-ATTGAGCC
* * *
30156951 -AGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTATCGGTCC
65 GA-TCGGAGAGGCATAATGAGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTATCGATCC
* * *
30157015 CACTGCCATAACCCTCAATCCAGTTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
129 CACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * **** * * * *
30157080 CCCATGAAACGGGCGTGTGGGCGGTCAGCCGGCCAAAGAGGCAGAATGTGCAAGCCGAGGATCGG
194 CACACGAAACGGGCACACGGGCGCTCAGCCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGA
* * * * *
30157145 CCCGGTCCCCCCTGTGTGATGTCAATCCTGCTGTCGTAACCCTCAGTTCGGTCTGATCTTAGACT
259 CCCGGTCCCCCCTGCGTGATATCAATCCTGCTGTCGCAAACCTCAGTCCGGTCTGATCTTAGACT
* *
30157210 GGGAATGAACTCCATATGCT
324 AGGAATGAACTCCATATGCC
*
30157230 TAGACTGGGGATGAACTCCGTATGTCTAAGTCAACC
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
30157266 TATGAAATGA
Statistics
Matches: 324, Mismatches: 50, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
342 17 0.05
343 303 0.94
344 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (343 bp):
TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCATTGAGCCG
ATCGGAGAGGCATAATGAGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTATCGATCCCA
CTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACA
CACGAAACGGGCACACGGGCGCTCAGCCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGACC
CGGTCCCCCCTGCGTGATATCAATCCTGCTGTCGCAAACCTCAGTCCGGTCTGATCTTAGACTAG
GAATGAACTCCATATGCC
Found at i:30157238 original size:26 final size:26
Alignment explanation
Indices: 30157202--30157253 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30157192 TCGGTCTGAT
30157202 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30157228 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30157254 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30157569 original size:26 final size:26
Alignment explanation
Indices: 30157540--30157592 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30157530 TGCCGTCGAT
30157540 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30157566 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30157592 C
1 C
30157593 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30159508 original size:26 final size:26
Alignment explanation
Indices: 30159479--30159531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30159469 CTGGTTAGAT
*
30159479 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
30159505 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30159531 C
1 C
30159532 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30159740 original size:26 final size:26
Alignment explanation
Indices: 30159688--30159740 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30159678 CCGGTCTGAT
* *
30159688 CTTAGACTAGGACTGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCACATG
*
30159714 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCACATG
30159740 C
1 C
30159741 CTAGGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:30160705 original size:119 final size:119
Alignment explanation
Indices: 30160488--30160726 Score: 433
Period size: 119 Copynumber: 2.0 Consensus size: 119
30160478 GGGTGCTGTT
30160488 GATCCTGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GATCCTGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
30160553 GTCAACCCACGAAACATGCGTTCGGGCGTTGAGTCAGCCGGAGAGGCATAATGC
66 GTCAACCCACGAAACATGCGTTCGGGCGCTGAGTCAGCCGGAGAGGCATAATGC
*
30160607 GATCCTGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTTTGCCTAA
1 GATCCTGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
30160672 GTCAACCCACGAAACGTGCGTTCGGGTGCTGAGTCAGTCGGAGAGGCATAATGC
66 GTCAACCCACGAAACATGCGTTCGGGCGCTGAGTCAGCCGGAGAGGCATAATGC
30160726 G
1 G
30160727 CAAGTTCAGG
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 115 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (119 bp):
GATCCTGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACATGCGTTCGGGCGCTGAGTCAGCCGGAGAGGCATAATGC
Found at i:30160966 original size:26 final size:26
Alignment explanation
Indices: 30160930--30160982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30160920 CTGGTCTGAT
*
30160930 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30160956 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30160982 C
1 C
30160983 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30161156 original size:26 final size:26
Alignment explanation
Indices: 30161120--30161178 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
30161110 CTTGATCCGG
30161120 TCCG-ATG-TTAGAC-TAGGAATGAAC
1 TCCGTATGCTTAGACAT-GGAATGAAC
30161144 TCCGTATGCTTAGACATGGAATGAAC
1 TCCGTATGCTTAGACATGGAATGAAC
*
30161170 TTCGTATGC
1 TCCGTATGC
30161179 CTAAGCCAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.74
27 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACATGGAATGAAC
Found at i:30161280 original size:196 final size:196
Alignment explanation
Indices: 30160922--30161282 Score: 467
Period size: 196 Copynumber: 1.8 Consensus size: 196
30160912 CCTTCGGTCT
* * * *
30160922 GGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
1 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
30160987 GTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCATAATACGCAAGCCAGGG
66 GCCAACCCATGAAACGAGCGCGCGGGTGCTCAACCAGCCGGAGAGGCAGAATACACAAGCCAGGG
* * * *
30161052 ATCGGCTCGGTCCCCCTTGCATGCTGTCGATCCTGTTGCTGGTCCTGCTGCCGTAACCCTTGATC
131 ATCGGCTCGATCCCCCCTACATGCTATCGATCCTGTTGCTGGTCCTGCTGCCGTAACCCTTGATC
30161117 C
196 C
* *
30161118 GGTCCGATGTTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTCGTATGCCTA
1 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTA
* * * * *
30161182 AGCCAACCCATGAAACGAGTGCGTGGGTGCTCAACC-GACCGGAGAGGTAGAATGCACAAGCCGG
65 AGCCAACCCATGAAACGAGCGCGCGGGTGCTCAACCAG-CCGGAGAGGCAGAATACACAAGCCAG
* *
30161246 GGATCAG-TCCGATCCCCCCTACGTGCTATCGATCCTG
129 GGATCGGCT-CGATCCCCCCTACATGCTATCGATCCTG
30161283 CTACTACCCT
Statistics
Matches: 139, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
195 2 0.01
196 136 0.98
197 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (196 bp):
GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCCATGAAACGAGCGCGCGGGTGCTCAACCAGCCGGAGAGGCAGAATACACAAGCCAGGG
ATCGGCTCGATCCCCCCTACATGCTATCGATCCTGTTGCTGGTCCTGCTGCCGTAACCCTTGATC
C
Found at i:30161660 original size:26 final size:26
Alignment explanation
Indices: 30161624--30161676 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30161614 TCGATCCGAT
*
30161624 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30161650 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30161676 C
1 C
30161677 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30162418 original size:26 final size:26
Alignment explanation
Indices: 30162374--30162425 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30162364 CTGATTTGAT
30162374 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30162400 CTTAGACTGAGG-ATTAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
30162426 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30162562 original size:185 final size:184
Alignment explanation
Indices: 30162216--30162761 Score: 616
Period size: 185 Copynumber: 3.0 Consensus size: 184
30162206 CCGGATGGGG
* * ** **
30162216 CTTAGACATGGAATGAACTCCCTAT-ACCTAAGCCAACCCACGAAACGGGTGTGTGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGA-CTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
* * * ** * * * *
30162280 CCGGTCGGAGAGGTAGAATGCGCAAGCCAGAGATTGGCCC-GATCCCCCTTACGTGCTGTCGATC
65 CCGATCGGAGAGGCAGAATACGCAAGCTGGGGATCGACCCAG-TCCCCCTTACGTACTGTCGATC
* *
30162344 CTGCTGTCGCAACCCTCGGTCTGATTTGATCTTAGACTGGGAATGAACTCCATATG
129 CTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATA
* * * * *
30162400 CTTAGAC-TGAGGATTAACTCCGTATGACTAAGTCAACCGACGAAACGAGCGTGCAGGCGCTCAG
1 CTTAGACATG-GAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
* * * *
30162464 TCGATCGGAGAGGCAGAATACGCAAGTTGGGGATCGACCCAGTCCCCTCCTT-CGTGCTG-CTGG
65 CCGATCGGAGAGGCAGAATACGCAAGCTGGGGATCGACCCAGT-CCC-CCTTACGTACTGTC-GA
* * * * *
30162527 TCTTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTTCGTATA
127 TCCTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATA
* * * *
30162585 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGC
* * *
30162650 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCTGTCCCCCTTACGTACTGTCGATCCT
66 CGATCGGAGAGGCAGAATACGCAAGCTGGGGATCGACCCAGTCCCCCTTACGTACTGTCGATCCT
* * * * *
30162715 GCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGGATGAACT
131 GCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACT
30162762 TCGTATGCCT
Statistics
Matches: 302, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
183 6 0.02
184 135 0.45
185 155 0.51
186 6 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGC
CGATCGGAGAGGCAGAATACGCAAGCTGGGGATCGACCCAGTCCCCCTTACGTACTGTCGATCCT
GCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATA
Found at i:30162597 original size:26 final size:26
Alignment explanation
Indices: 30162559--30162609 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30162549 CTGATCCGAT
*
30162559 CTTAGACTAGGAATGAACTTCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
30162585 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
30162610 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:30162943 original size:26 final size:26
Alignment explanation
Indices: 30162907--30162965 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
30162897 CTTGATCCGG
30162907 TCCG-ATG-TTAGAC-TAGGAATGAAC
1 TCCGTATGCTTAGACAT-GGAATGAAC
30162931 TCCGTATGCTTAGACATGGAATGAAC
1 TCCGTATGCTTAGACATGGAATGAAC
*
30162957 TTCGTATGC
1 TCCGTATGC
30162966 CTAAGCCAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.74
27 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACATGGAATGAAC
Found at i:30163067 original size:354 final size:350
Alignment explanation
Indices: 30162400--30163207 Score: 878
Period size: 354 Copynumber: 2.3 Consensus size: 350
30162390 ACTCCATATG
* * * *
30162400 CTTAGACTGAGG-ATTAACTCCGTATGACTAAGTCAACCGACGAAACGAGCGTGC-AGGCGCTCA
1 CTTAGACTG-GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GCGCTCA
* * * * ** * *
30162463 GTCGATCGGAGAGGCAGAATACGCAAGTTGGGGATCGACCCAGT-CCCC-T-C---CT-TCG---
64 GCCGACCGGAGAGGAATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTTGCATGCTGTCGATC
* * * * * *
30162518 -TGCTGCTGGTCTTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTTCGT
129 CTGTTGCTGGTCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGT
*
30162582 ATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCAGGTGCTC
194 ATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-ATGCAGGTGCTC
* *** * * * *
30162647 AGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCTGTCCCCCTTACGTACTGTCGAT
258 AACCAACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCTGTCCCCCCTACGTACTATCGAT
* * **
30162712 CCTGCTGTCGTAACCCTCAGTCCGGTCTGAT
323 CCTGCT-AC-T-ACCCTCAGTCCGATCCAAT
* * * *
30162743 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* * * *
30162808 C-AGCCGGAGAGGCATAATACGTAAGCC-AGGGATCGGCTCGGTCCCCCTTGCATGCTGTCGATC
66 CGA-CCGGAGAGGAATAATACGCAAGCCGA-GGATCGACCCGGTCCCCCTTGCATGCTGTCGATC
* * * *
30162871 CTGTTGCTGGTCCTGCTGCCGTAACCCTTGATCCGGTCCGATGTTAGACTAGGAATGAACTCCGT
129 CTGTTGCTGGTCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGT
* * *
30162936 ATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAG-TGCGTGGGTGCT
194 ATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGATGC--AGGTGCT
* * *
30163000 CAACCAACCGGAGAGGTAGAATGCACAAGCCGGGGATC-AGTCC-GATCCCCCCTACGTGCTATC
257 CAACCAACCGGAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCTG-TCCCCCCTACGTACTATC
*
30163063 GATCCTGCTACTACCCTCGGTCCGATCCAAT
320 GATCCTGCTACTACCCTCAGTCCGATCCAAT
*** * *
30163094 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTGTGAAACGAGCGTTCGAGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
*
30163159 CGACCGGAGAGGAATAATACGCAAGCCGAGGATTGACCCGGTCCCCCTT
66 CGACCGGAGAGGAATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTT
30163208 TGCGTACTGC
Statistics
Matches: 383, Mismatches: 61, Indels: 34
0.80 0.13 0.07
Matches are distributed among these distances:
342 3 0.01
343 83 0.22
344 4 0.01
345 1 0.00
346 1 0.00
349 2 0.01
350 3 0.01
351 111 0.29
352 6 0.02
353 3 0.01
354 166 0.43
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (350 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
CGACCGGAGAGGAATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTTGCATGCTGTCGATCCT
GTTGCTGGTCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
ACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGATGCAGGTGCTCAAC
CAACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCTGTCCCCCCTACGTACTATCGATCCT
GCTACTACCCTCAGTCCGATCCAAT
Found at i:30163364 original size:159 final size:153
Alignment explanation
Indices: 30162938--30163384 Score: 398
Period size: 159 Copynumber: 2.9 Consensus size: 153
30162928 AACTCCGTAT
* *
30162938 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGCGT-GGGTGCTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGA---CGTACGGCGCTCA
* * * * * *
30163002 ACCAACCGGAGAGGTAGAATGCACAAGCCGGGGATCAGTCCGATCCCCCCTACGTGCTATCGATC
63 GCCAACCGGAGAGGAAGAATGCGCAAGCCGGGGATCAGTCCGGTCCCCCCTACGTACTACCGATC
* *
30163067 CTGCTACTACCCTCGGTCCGATCCAA
128 CTGCCACAACCCTCGGTCCGATCCAA
* * ** * *
30163093 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCTGTGAAACGAGCGTTCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGA-CGTACG-GCGCTCA
* * * * * * * * * *
30163157 GCCGACCGGAGAGGAATAATACGCAAGCCGAGGAT-TGACCCGGTCCCCCTTTGCGTACTGCCGG
63 GCCAACCGGAGAGGAAGAATGCGCAAGCCGGGGATCAG-TCCGGTCCCCC-CTACGTACTACCGA
***
30163221 TCCCGTTGCCACAACCCTCGGTCCGA-CTGGG
126 T-CC--TGCCACAACCCTCGGTCCGATC-CAA
* * *
30163252 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGACGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAA-CGACGTAC-GGCGCTCAG
* * * * * *
30163317 CCTACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGTTCGGTCCCCCCTGCGTGCTACCGATCC
64 CCAACCGGAGAGGAAGAATGCGCAAGCCGGGGATCAGTCCGGTCCCCCCTACGTACTACCGATCC
30163382 TGC
129 TGC
30163385 TGCTGCAACC
Statistics
Matches: 229, Mismatches: 50, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
153 4 0.02
154 3 0.01
155 88 0.38
156 9 0.04
157 4 0.02
158 12 0.05
159 104 0.45
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (153 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGACGTACGGCGCTCAGCC
AACCGGAGAGGAAGAATGCGCAAGCCGGGGATCAGTCCGGTCCCCCCTACGTACTACCGATCCTG
CCACAACCCTCGGTCCGATCCAA
Found at i:30164701 original size:171 final size:171
Alignment explanation
Indices: 30164430--30164798 Score: 397
Period size: 171 Copynumber: 2.2 Consensus size: 171
30164420 CTGATCCGAT
* * * * * ** *
30164430 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGTTGAGC
1 CTTAGACTGGGAATAAACTCCATATGCCTAAGCCAACCCACCAAATGAGCGTGCGAGCACTCAGC
* * * *
30164495 CGACCGAAGAGGCGTAATGAGCAAGTCGGGGATCGACCC-AGTCCCCCTCTATGTGCTGCTGATC
66 CGACCGAAGAGGAGTAATGAGCAAGTCGGGGATCGACCCGA-TCCCCCCCTATGTGCTACCGATC
30164559 CCGCTGCCGATCCTGCTACCACAACCATCGGTCCGATTGGGG
130 CCGCTGCCGATCCTGCTACCACAACCATCGGTCCGATTGGGG
*
30164601 CTTAGACAT-GGAATAAACTCCATATGGCTAAGCCAACCCACCAAATGAGCGTGCGAGCACTCAG
1 CTTAGAC-TGGGAATAAACTCCATATGCCTAAGCCAACCCACCAAATGAGCGTGCGAGCACTCAG
* * * *
30164665 TCGGCC-AGAGAGGAAG-AATGCGCAAG-CTGGGGATCGACCCGATCCCCCCCTGTGTGCTACCG
65 CCGACCGA-AGAGG-AGTAATGAGCAAGTC-GGGGATCGACCCGATCCCCCCCTATGTGCTACCG
* * * * * * ** **
30164727 ATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGATCCGAT
127 ATCCCGCTGCCGATCCTGCTACCACAACCATCGGTCCGATTGGGG
* *
30164772 CTTAGACTGGGAATGAACTTCATATGC
1 CTTAGACTGGGAATAAACTCCATATGC
30164799 TTAGGCATGG
Statistics
Matches: 162, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
170 3 0.02
171 156 0.96
172 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (171 bp):
CTTAGACTGGGAATAAACTCCATATGCCTAAGCCAACCCACCAAATGAGCGTGCGAGCACTCAGC
CGACCGAAGAGGAGTAATGAGCAAGTCGGGGATCGACCCGATCCCCCCCTATGTGCTACCGATCC
CGCTGCCGATCCTGCTACCACAACCATCGGTCCGATTGGGG
Found at i:30165128 original size:354 final size:355
Alignment explanation
Indices: 30164657--30165435 Score: 968
Period size: 354 Copynumber: 2.2 Consensus size: 355
30164647 GAGCGTGCGA
** ** *
30164657 GCACTCAGTCGGCCAGAGAGGAAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCCTGTGTGC
1 GCACTCAACCGGCCAGAGAGGAAGAATGCGCAAGCTAAGGATCGACCCGATCCCCCCCTGCGTGC
* *
30164722 TACCGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
66 TACCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
* * * * * *
30164787 AACTTCATATGCTTAGGCATGGAATAAACTCCGTATGCCTCAGCCAACCAATGAAACAAGCGTGC
131 AACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAATAAAACAAGCATAC
* *
30164852 GGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCAGGGACTGGCCCGATCCCCCCTGCTTT
196 GGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCAGGGACTGGCCCGATCCCCCCTGCGTG
* * * *
30164917 ATACCAATCCTGCTATCGTAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
261 ATACCAATCCTGCAATCGCAACCCTCAGCCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
*
30164982 CCTAAGTCAACCCACGAAACGAGCTTATGG
326 CATAAGTCAACCCACGAAACGAGCTTATGG
* * * * *
30165012 GCACTCAACCGGCCGGAGAGGTAGAATGCGCAAGCTAAGGATCGGCCTGAT-CCCCCCTGCGTGT
1 GCACTCAACCGGCCAGAGAGGAAGAATGCGCAAGCTAAGGATCGACCCGATCCCCCCCTGCGTGC
* * *
30165076 TATCGATCCTGCTATTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
66 TACCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
* * * ** ** *
30165141 AACTCCGTATGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCGTAAAATGAGCATAT
131 AACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAATAAAACAAGCATAC
* * * *
30165206 GGGTGCTCAGCCGGTCGGAGTGGCAGAATGCGTAAGCCAGGGACTGGCCCGGTCCCCCCTGCGTG
196 GGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCAGGGACTGGCCCGATCCCCCCTGCGTG
* ** * * * *
30165271 CTGTCGATCCTGCAATCGCAACCCTCAGCCCGGTCTGATCTTAGACTTGGAATGAACTTTGTATG
261 ATACCAATCCTGCAATCGCAACCCTCAGCCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * **
30165336 CATAAGTCAACCCATGAAATGAGCGTGCGG
326 CATAAGTCAACCCACGAAACGAGCTTATGG
** * * * * * ** * *
30165366 GTGCTGAGCCGGCC-GAAGAGGCATAATGCGCAAGATGGGGATCGACCCGATCCCCCTCTACGTG
1 GCACTCAACCGGCCAG-AGAGGAAGAATGCGCAAGCTAAGGATCGACCCGATCCCCCCCTGCGTG
30165430 CTACCG
65 CTACCG
30165436 GTCATGCTGC
Statistics
Matches: 355, Mismatches: 67, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
353 1 0.00
354 297 0.84
355 57 0.16
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (355 bp):
GCACTCAACCGGCCAGAGAGGAAGAATGCGCAAGCTAAGGATCGACCCGATCCCCCCCTGCGTGC
TACCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
AACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAATAAAACAAGCATAC
GGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCAGGGACTGGCCCGATCCCCCCTGCGTG
ATACCAATCCTGCAATCGCAACCCTCAGCCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
CATAAGTCAACCCACGAAACGAGCTTATGG
Found at i:30165155 original size:26 final size:26
Alignment explanation
Indices: 30165126--30165178 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30165116 CCGGTCCGAT
30165126 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACGT-GGAATGAACTCCGTATG
30165152 CTTAGACGTGGAATGAACTCCGTATG
1 CTTAGACGTGGAATGAACTCCGTATG
30165178 C
1 C
30165179 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCGTATG
Found at i:30165669 original size:26 final size:26
Alignment explanation
Indices: 30165626--30165704 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
30165616 CTGGTCTGAT
* *
30165626 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30165652 CTTTGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30165678 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
30165704 C
1 C
30165705 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30166390 original size:26 final size:26
Alignment explanation
Indices: 30166354--30166404 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
30166344 TCGATCCGAT
*
30166354 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
* * *
30166380 CTTAGATTAGGGATAAACTTTGTAT
1 CTTAGACTAGGAATAAACTCTGTAT
30166405 ACCTGAGTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:30174266 original size:159 final size:157
Alignment explanation
Indices: 30173895--30174395 Score: 455
Period size: 159 Copynumber: 3.2 Consensus size: 157
30173885 AACTCCGTAT
*
30173895 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCT-TGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGGTGTGCGGGCGCTCA
* * * ** * * **
30173959 GCCGGTCGAAGAGGTAGAATGCGCAAGTTGGGGATTGGCCCGGT-CCCCCTACGTGTTGTCGATC
65 GCCGATCGAAGAGGCAGAATGAGCAAG-CCGGGATTGGCCCGATCCCCCCTGCGTGTTACCGATC
* * **
30174023 CTACTGTCGCAACCCTCAGTTTGATCCGA
129 CTACTGCCACAACCCTCAGTCGGATCCGA
* * * * * * *
30174052 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAAC-GAGCGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GTGTGCGGGCGCTC
* *
30174115 AGCCGATCGAAGAGGCATAATGAGCAAGCCAGGGATTGGCCCGATCCCCCTCTGCGTGTTACCGG
64 AGCCGATCGAAGAGGCAGAATGAGCAAGCC-GGGATTGGCCCGATCCCCC-CTGCGTGTTACCGA
* * * * * * *
30174180 TCCTGCTGCCATAACCTTCGGTCCGGCT-GGG
127 TCCTACTGCCACAACCCTCAGT-CGGATCCGA
*
30174211 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAG
* * ** **
30174276 CC-AGCTGAAGAGGCAGAAT-ATGCAAGCCGAGGATTGGCCCGATCCCACCTGCGTCCTGTCGAT
66 CCGATC-GAAGAGGCAGAATGA-GCAAGCCG-GGATTGGCCCGATCCCCCCTGCGTGTTACCGAT
* * *
30174339 CCTAC-GATCGCAACCCTC-GATCCGATCCGA
128 CCTACTG-CCACAACCCTCAG-TCGGATCCGA
*
30174369 TCTTAGAC-TGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
30174396 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 57, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
155 1 0.00
156 1 0.00
157 110 0.40
158 38 0.14
159 118 0.43
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGAGCAAGCCGGGATTGGCCCGATCCCCCCTGCGTGTTACCGATCCT
ACTGCCACAACCCTCAGTCGGATCCGA
Found at i:30174777 original size:26 final size:27
Alignment explanation
Indices: 30174739--30174796 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
30174729 CCGATCCGAT
30174739 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
*
30174765 CTTAGACAT-GGAATGAACTCTATATGC
1 CTTAGAC-TGGGAATGAACTCCATATGC
30174792 CTTAG
1 CTTAG
30174797 CCAACCCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:30175097 original size:159 final size:160
Alignment explanation
Indices: 30174764--30175151 Score: 424
Period size: 160 Copynumber: 2.4 Consensus size: 160
30174754 AACTCCATAT
* *
30174764 GCTTAGACATGGAATGAACTCTATATGCCTTAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTTAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * *
30174829 CCGACCGAAGAGGCAGAATGCGTAAACCGGGGACCAGCTCGATCCCTCTCCTGCGTGCTATCAAT
66 CCGACCGAAGAGGCAGAATGCGCAAACCGGGGACCAGCCCGATCCCCCTCCTGCGTGCTACCAAT
* *
30174894 CCTGCTGCCGCAACCCTCGGTCTGGTCTGA
131 CCTGCTGCCACAACCCTCGGTCTGGACTGA
* * * * * * * * *
30174924 TCTTAGAC-TAGGAATGAACTCCGTATGCCTTAGTCAACCCATGAAATGAGTGTTCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTTAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * ** * * * **
30174988 GCCGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCT-CTGCGTGCTACCGG
65 ACCGACCGAAGAGGCAGAATGCGCAAACCGGGGACCAGCCCGATCCCCCTCCTGCGTGCTACCAA
*
30175052 TCCTGCTGCCACAACCCTCGGTCT-GACTGGG
130 TCCTGCTGCCACAACCCTCGGTCTGGACT-GA
* * * * * *
30175083 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCAACAAAACG-GATGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTTAGCCAACCCACGAAACGAG-CGTGCGGGCACTCA
30175147 ACCGA
65 ACCGA
30175152 TGGGAAAGGT
Statistics
Matches: 184, Mismatches: 40, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 4 0.02
159 88 0.48
160 92 0.50
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCATATGCCTTAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCGACCGAAGAGGCAGAATGCGCAAACCGGGGACCAGCCCGATCCCCCTCCTGCGTGCTACCAAT
CCTGCTGCCACAACCCTCGGTCTGGACTGA
Found at i:30175278 original size:26 final size:26
Alignment explanation
Indices: 30175242--30175293 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30175232 TCGGTTCGAT
*
30175242 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
30175268 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30175294 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30175654 original size:26 final size:26
Alignment explanation
Indices: 30175616--30175668 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30175606 CTGGTCTGAT
30175616 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
30175642 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
30175668 C
1 C
30175669 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30175994 original size:26 final size:26
Alignment explanation
Indices: 30175958--30176010 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30175948 CTGATCCGAT
* *
30175958 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
30175984 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30176010 C
1 C
30176011 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30176354 original size:170 final size:169
Alignment explanation
Indices: 30176152--30176470 Score: 417
Period size: 170 Copynumber: 1.9 Consensus size: 169
30176142 TGCGACAATA
**
30176152 CTTGGTCCGACTCGGGTTTAGATATGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAG
1 CTTGGTCCGACTCGGGTTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
* *** * * * * *
30176217 CGCGCGTACGCTCAGTTGGCCAGAGAGGCAAAATGCGCAAGCCATGGATCGGCTCGATCCCCCCT
66 CGCGCGGACGCTCAACCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGACCGACCCGAT-ACCCCT
30176282 GCGTGCTACCGATCCTGCTGCTGCTCTTGCTGCCACAACC
130 GCGTGCTACCGATCCTGCTGCTGCTCTTGCTGCCACAACC
*
30176322 CTTGGTCCGA-TCTGGTCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
1 CTTGGTCCGACTCGGGT-TTAGATAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
* * * * * * *
30176385 AGCGTGTGGGCGCTCAACCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGACCGACCCGGTAGCCC
64 AGCGCGCGGACGCTCAACCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGACCGACCCGATACCCC
*
30176450 TGCGTGCTATCGATCCTGCTG
129 TGCGTGCTACCGATCCTGCTG
30176471 TCGTAACCCT
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
169 30 0.24
170 97 0.76
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (169 bp):
CTTGGTCCGACTCGGGTTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
CGCGCGGACGCTCAACCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGACCGACCCGATACCCCTG
CGTGCTACCGATCCTGCTGCTGCTCTTGCTGCCACAACC
Found at i:30176598 original size:156 final size:157
Alignment explanation
Indices: 30176318--30176600 Score: 336
Period size: 156 Copynumber: 1.8 Consensus size: 157
30176308 TTGCTGCCAC
* * * * *
30176318 AACCCTTGGTCCGATCTGGTCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGATCCGATCTTAGAATGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * *
30176383 CGAGCGTGTGGGCGCTCAACCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGACCGACCCGGTAGC
66 CGAGCGTGCGAGCGCTCAACCGGCCGAAGAGGCAAAATGCACAAACCAGGGACCAACCCGGTAGC
30176448 CCTGCGTGCTATCGATCCTGCTGTCGT
131 CCTGCGTGCTATCGATCCTGCTGTCGT
* * *
30176475 AACCCTCGGTCTGATCCGATCTTAGACTGAGAATGAA-TTCGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCCGATCCGATCTTAGAATGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * *** *
30176539 TGAGTGTGCGAGCGCTGAGCCGGCCGAAGAGGTGTAATGCACAAACC-GAGGATCAACCCGGT
66 CGAGCGTGCGAGCGCTCAACCGGCCGAAGAGGCAAAATGCACAAACCAG-GGACCAACCCGGT
30176601 CCCCCTTCGC
Statistics
Matches: 102, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
155 1 0.01
156 70 0.69
157 31 0.30
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (157 bp):
AACCCTCGGTCCGATCCGATCTTAGAATGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGAGCGCTCAACCGGCCGAAGAGGCAAAATGCACAAACCAGGGACCAACCCGGTAGC
CCTGCGTGCTATCGATCCTGCTGTCGT
Found at i:30178012 original size:159 final size:159
Alignment explanation
Indices: 30177523--30178338 Score: 634
Period size: 159 Copynumber: 5.2 Consensus size: 159
30177513 ACTCCATATG
* *
30177523 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAAC
* * ** * * * * *
30177588 CGGCCGGAGAGGTAGAATATGCAAGCCAGGGATCGGCTCGGTCCCCCACTGTGTGCTGTCAATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
30177653 CACTACCGTAACCCTCGGTCCGATCTGAT
131 CGCTACCGCAACCCTCGGTCCGGTCCGAT
* * * * * * * * *
30177682 CTTAGAC-TAGGAATGAAGTCCGTATGCATAAGTCAACCCATGAAATGAGTGTACGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAA
* * * * **
30177746 TCGGTCGAAGAGGCATAATGCGCAAG-TGGGGATC-AGCTCGGT--CCCTCTGCGTGCTACCGAT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CTCGGTCCCCCTCTGCGTGCTGTCGAT
* * **
30177807 CCCGC-AGCCACAACCCTCGGTCCGG-CTGGGG
129 CCCGCTA-CCGCAACCCTCGGTCCGGTC-CGAT
* * * **
30177838 CTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGAATGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAAC
** * * * * * * *
30177903 CGACCGAAGAGGAAGAATGCGTAAGCGGGGGATCGACCCGGTCCCCCTTTACGTGCTGTCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGATCC
* *
30177968 TGCTACCGCAACCCTTGGTCCGGTCCGAT
131 CGCTACCGCAACCCTCGGTCCGGTCCGAT
* * ** * * * *
30177997 CTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACGAAC-AAAAGGAGCGTGCAGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGG-GCGTGCGGGTGCTCA
* * * * * * * *
30178060 GCCAGTTGGAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
64 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGAT
* * * * * **
30178125 CCAGCTGCCACAACCCTCGGTTCGG-CTGGGG
129 CCCGCTACCGCAACCCTCGGTCCGGTC-CGAT
* ** * * *
30178156 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGGCCACGAAATGGGCGT-CCGG-ACGCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAAC
* * * * * * * *
30178219 AGGTCGGAGTGGTAGAATGCGCAAGCCGGGGATCGGCTCGATCCCTC-CTGCGTTCTATCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
30178283 TGCTGCAGCAACCCTCGGTCCAGTCCGAT
131 CGCTACCGCAACCCTCGGTCCGGTCCGAT
*
30178312 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30178339 TTAGACTGGG
Statistics
Matches: 504, Mismatches: 135, Indels: 39
0.74 0.20 0.06
Matches are distributed among these distances:
155 3 0.01
156 160 0.32
157 52 0.10
158 24 0.05
159 257 0.51
160 8 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAAC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGATCC
CGCTACCGCAACCCTCGGTCCGGTCCGAT
Found at i:30178318 original size:315 final size:310
Alignment explanation
Indices: 30177522--30178338 Score: 882
Period size: 315 Copynumber: 2.6 Consensus size: 310
30177512 AACTCCATAT
* * * * *
30177522 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGT-CCGG-ACTCAA
** * * *
30177587 CCGGCCGGAGAGGTAGAATATGCAAGCCAGGGATCGGCTCGGTCCCCCACTGTGTGCTGTCAATC
64 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGT-CCCC-CTGCGTGCTGTCGATC
** * * * *
30177652 CCACTACCGTAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAAGTCCGTATGCATAAGTCA
127 CTGCTACCGCAACCCTCGGTCCG-TCCGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCA
* ** * * * * * * * **
30177717 ACCCATGAAATGAGTGTACGGGTGCTGAGTCGGTCGAAGAGGCATAATGCGCAAGTGGGGATCAG
191 ACCAACAAAAGGAGCGTACAGGCGCTGAGCCAGTCGAAGAGGCATAATGCACAAGCAGGGATCAG
* *
30177782 CTCGGTCCCTCTGCGTGCTACCGATCCCGCAGCCACAACCCTCGGTCCGGCTGGG
256 CCCGGTCCCTCTGCGTGCTACCGATCCAGCAGCCACAACCCTCGGTCCGGCTGGG
* * * *
30177837 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGAATGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTCCGGA--CTCAA
* * * * * * * *
30177902 CCGACCGAAGAGGAAGAATGCGTAAGCGGGGGATCGACCCGGTCCCCCTTTACGTGCTGTCGATC
64 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC--TGCGTGCTGTCGATC
* *
30177967 CTGCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCA
127 CTGCTACCGCAACCCTCGGTCC-GTCCGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCA
* * * *
30178032 ACGAACAAAAGGAGCGTGCAGGCGCTGAGCCAGTTGGAGAGGCATAATGCACAAGCCAGGGATC-
191 ACCAACAAAAGGAGCGTACAGGCGCTGAGCCAGTCGAAGAGGCATAATGCACAAG-CAGGGATCA
** * * *
30178096 GACCCGGTCCCCCTCTGCGTGCTGTCGGTCCAGCTGCCACAACCCTCGGTTCGGCTGGG
255 G-CCCGGT--CCCTCTGCGTGCTACCGATCCAGCAGCCACAACCCTCGGTCCGGCTGGG
** * *
30178155 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGGCCACGAAATGGGCGTCCGGACGCAACA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTCCGGACTCAACC
* * * * *
30178220 GGTCGGAGTGGTAGAATGCGCAAGCCGGGGATCGGCTCGATCCCTCCTGCGTTCTATCGATCCTG
66 GGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCC-CCTGCGTGCTGTCGATCCTG
* * *
30178285 CTGCAGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGC
130 CTACCGCAACCCTCGGTCC-GTCCGATCTTAGACTAGGAATGAACTTC-GTATGC
30178339 TTAGACTGGG
Statistics
Matches: 412, Mismatches: 79, Indels: 22
0.80 0.15 0.04
Matches are distributed among these distances:
313 1 0.00
314 7 0.02
315 256 0.62
316 51 0.12
317 2 0.00
318 95 0.23
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (310 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTCCGGACTCAACC
GGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCCTGC
TACCGCAACCCTCGGTCCGTCCGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCAA
CAAAAGGAGCGTACAGGCGCTGAGCCAGTCGAAGAGGCATAATGCACAAGCAGGGATCAGCCCGG
TCCCTCTGCGTGCTACCGATCCAGCAGCCACAACCCTCGGTCCGGCTGGG
Found at i:30178348 original size:26 final size:26
Alignment explanation
Indices: 30178312--30178364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30178302 CCAGTCCGAT
*
30178312 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30178338 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30178364 C
1 C
30178365 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30179281 original size:159 final size:159
Alignment explanation
Indices: 30178941--30179655 Score: 642
Period size: 159 Copynumber: 4.5 Consensus size: 159
30178931 GTCGGTTAAC
*
30178941 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATGTGCAAGCCGGGGA
1 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGGA
* * * * ** *
30179006 TTGGCCC-AGT-CCCCTCTACGTGCTGTCGATCCTACT-GCTGCAACCCTCAGTCCGGTTCGATC
66 TCGGCCCGA-TCCCCCTCTACGTGCTATCGATCCTACTGGC-ACAACCCTCGGTCCGACTCGAGC
* *
30179068 TTAGACTGGGAATGAACTCCGTATGCATAAA
129 TTAGACTGGGAATGAACTCCCTATGCATAAG
* * * * *
30179099 TCAACCCATGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCGTAATGTGCAAGCCGGGGA
1 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGGA
* * * *
30179164 TCGGCCCGATCCCCCTC-AGCGTGCTATCGGTCCTGCTGGCACAACCCTCGGTCCGACTGGGGCT
66 TCGGCCCGATCCCCCTCTA-CGTGCTATCGATCCTACTGGCACAACCCTCGGTCCGACTCGAGCT
* *
30179228 TAGACAT-TGAATGAACTCCCTATGCCTAAG
130 TAGAC-TGGGAATGAACTCCCTATGCATAAG
* * * * * **
30179258 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGA
1 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGGA
* ** ** * * * *
30179323 TCGGCCC-AGTCCCCC-CTACGTACTATCGATCCTACTATCGTAACCCTTGGTCTGA-TCCAATC
66 TCGGCCCGA-TCCCCCTCTACGTGCTATCGATCCTACTGGCACAACCCTCGGTCCGACT-CGAGC
*
30179385 TTAGACTGGGAATGAACTCCGTATGCATAAG
129 TTAGACTGGGAATGAACTCCCTATGCATAAG
* * * ** * *
30179416 TCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTCGTTGAAGAGGCATAATGCGCAAGCCGGGGA
1 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGGA
** ** * * ** * * * * * *
30179481 TCGGCCCGATCCCTTTC-AGCCAGCTATTGGTCCCGCTGCCAAAACCCTCGGTCTGGCTGGGGCT
66 TCGGCCCGATCCCCCTCTA-CGTGCTATCGATCCTACTGGCACAACCCTCGGTCCGACTCGAGCT
* *
30179545 TAGACAT-TGAATGAACTCCCTATGCCTAAG
130 TAGAC-TGGGAATGAACTCCCTATGCATAAG
* * * * * * * *
30179575 CCAACCCAC-AAATTGGGTGTGCGGGCGCTCAACCGACCGGAGAGGCATAATGTGCAAGTCGAGG
1 CCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGG
*
30179639 ATCAGCCCGATCCCCCT
65 ATCGGCCCGATCCCCCT
30179656 ATTCGTGTTG
Statistics
Matches: 441, Mismatches: 101, Indels: 29
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.00
158 192 0.44
159 242 0.55
160 5 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGGA
TCGGCCCGATCCCCCTCTACGTGCTATCGATCCTACTGGCACAACCCTCGGTCCGACTCGAGCTT
AGACTGGGAATGAACTCCCTATGCATAAG
Found at i:30179424 original size:158 final size:157
Alignment explanation
Indices: 30178942--30179487 Score: 600
Period size: 158 Copynumber: 3.5 Consensus size: 157
30178932 TCGGTTAACC
* * * *
30178942 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATGTGCAAGCCGGGGAT
1 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGAT
* * * * * *
30179007 TGGCCCAGTCCCCTCTACGTGCTGTCGATCCTACTGCTGCAACCCTCAGTCCGGTTCGATCTTAG
66 CGGCCCAGTCCCCCCTACGTGCTATCGATCCTACTGC-GCAACCCTCGGTCCGATCCGATCTTAG
*
30179072 ACTGGGAATGAACTCCGTATGCATAAAT
130 ACTGGGAATGAACTCCGTATGCATAAGT
* * * *
30179100 CAACCCATGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGC-GTAATGTGCAAGCCGGGGA
1 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAG-AATGCGCAAGCCGGGGA
* * * * **
30179164 TCGGCCC-GAT-CCCCCTCAGCGTGCTATCGGTCCTGCTGGCACAACCCTCGGTCCGA-CTGGGG
65 TCGGCCCAG-TCCCCCCT-A-CGTGCTATCGATCCTACT-GCGCAACCCTCGGTCCGATC-CGAT
* * * *
30179226 CTTAGACAT-TGAATGAACTCCCTATGCCTAAGC
125 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGT
* * * * *
30179259 CAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGAT
1 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGAT
* * * * * *
30179324 CGGCCCAGTCCCCCCTACGTACTATCGATCCTACTATCGTAACCCTTGGTCTGATCCAATCTTAG
66 CGGCCCAGTCCCCCCTACGTGCTATCGATCCTACT-GCGCAACCCTCGGTCCGATCCGATCTTAG
30179389 ACTGGGAATGAACTCCGTATGCATAAGT
130 ACTGGGAATGAACTCCGTATGCATAAGT
* ** *
30179417 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCTC-GTTGAAGAGGCATAATGCGCAAGCCGGGGA
1 CAACCCACGAAACGAGCGTGCGGGCGCTCAGC-CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGA
30179481 TCGGCCC
65 TCGGCCC
30179488 GATCCCTTTC
Statistics
Matches: 319, Mismatches: 56, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
157 7 0.02
158 182 0.57
159 119 0.37
160 11 0.03
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGAT
CGGCCCAGTCCCCCCTACGTGCTATCGATCCTACTGCGCAACCCTCGGTCCGATCCGATCTTAGA
CTGGGAATGAACTCCGTATGCATAAGT
Found at i:30179529 original size:317 final size:317
Alignment explanation
Indices: 30178941--30179626 Score: 989
Period size: 317 Copynumber: 2.2 Consensus size: 317
30178931 GTCGGTTAAC
* * * * **
30178941 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATGTGCAAGCCGGGGA
1 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGA
* * * * * * *
30179006 TTGGCCCAGTCCCCTCTACGTGCTGTCGATCCTACTGCTGCAACCCTCAGTCCGGTTCGATCTTA
66 TCGGCCCAGTCCCCCCTACGTACTATCGATCCTACTGCTGCAACCCTCAGTCCGATCCAATCTTA
* *
30179071 GACTGGGAATGAACTCCGTATGCATAAATCAACCCATGAAACGAGCGTGCGGGCGCTGAGCTGGC
131 GACTGGGAATGAACTCCGTATGCATAAATCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTCGC
* * ** *
30179136 CGAAGAGGCGTAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCGTGCTATCGGTCCTGCT
196 CGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCCAGCTATCGGTCCCGCT
* *
30179201 GGCACAACCCTCGGTCCGACTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAG
261 GCCAAAACCCTCGGTCCGACTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAG
*
30179258 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGA
1 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGA
* * ** *
30179323 TCGGCCCAGTCCCCCCTACGTACTATCGATCCTACT-ATCGTAACCCTTGGTCTGATCCAATCTT
66 TCGGCCCAGTCCCCCCTACGTACTATCGATCCTACTGCT-GCAACCCTCAGTCCGATCCAATCTT
*
30179387 AGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTCG
130 AGACTGGGAATGAACTCCGTATGCATAAATCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTCG
** ** *
30179452 TTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTTTCAGCCAGCTATTGGTCCCGC
195 CCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCCAGCTATCGGTCCCGC
* *
30179517 TGCCAAAACCCTCGGTCTGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAG
260 TGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAG
* * *
30179575 CCAACCCAC-AAATTGGGTGTGCGGGCGCTCAACCGACCGGAGAGGCATAATG
1 CCAACCCACGAAA-TGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATG
30179627 TGCAAGTCGA
Statistics
Matches: 328, Mismatches: 39, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
316 4 0.01
317 324 0.99
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (317 bp):
CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGA
TCGGCCCAGTCCCCCCTACGTACTATCGATCCTACTGCTGCAACCCTCAGTCCGATCCAATCTTA
GACTGGGAATGAACTCCGTATGCATAAATCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTCGC
CGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCCAGCTATCGGTCCCGCT
GCCAAAACCCTCGGTCCGACTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAG
Found at i:30179674 original size:159 final size:158
Alignment explanation
Indices: 30178941--30179834 Score: 588
Period size: 159 Copynumber: 5.6 Consensus size: 158
30178931 GTCGGTTAAC
* * * * * *
30178941 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATGTGCAAGCCGGGGA
1 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGA
* * ** *** * * * * **
30179006 TTGGCCC-AGTCCCCTCTA-CGTGCTGTCGATCCTACTGCTGCAACCCTCAGTCCGGTTCGATCT
66 TCGGCCCGA-TCCCC-CTATCGTGCTATCGATCCCGCTGCCAAAACCCTCGGTCTGGCTGGGGCT
* * * *
30179069 TAGAC-TGGGAATGAACTCCGTATGCATAAA
129 TAGACAT-TGAATGAACTCCCTATGCCTAAG
* * * * * * * * * *
30179099 TCAACCCATGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCGTAATGTGCAAGCCGGGGA
1 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGA
* * * * * * *
30179164 TCGGCCCGATCCCCCTCAGCGTGCTATCGGTCCTGCTGGCACAACCCTCGGTCCGACTGGGGCTT
66 TCGGCCCGATCCCCCT-ATCGTGCTATCGATCCCGCTGCCAAAACCCTCGGTCTGGCTGGGGCTT
30179229 AGACATTGAATGAACTCCCTATGCCTAAG
130 AGACATTGAATGAACTCCCTATGCCTAAG
* *
30179258 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGA
1 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGA
* ** ** ** * * ****
30179323 TCGGCCC-AGTCCCCCCTA-CGTACTATCGATCCTACTATCGTAACCCTTGGTCT-GATCCAATC
66 TCGGCCCGA-T-CCCCCTATCGTGCTATCGATCCCGCTGCCAAAACCCTCGGTCTGGCT-GGGGC
* * *
30179385 TTAGAC-TGGGAATGAACTCCGTATGCATAAG
128 TTAGACAT-TGAATGAACTCCCTATGCCTAAG
* * * * ** *
30179416 TCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTCG-TTGAAGAGGCATAATGCGCAAGCCGGGG
1 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGC-CGACCGGAGAGGCATAATGCGCAAGCCGGGG
** * ** * *
30179480 ATCGGCCCGATCCCTTTCAGCCAGCTATTGGTCCCGCTGCCAAAACCCTCGGTCTGGCTGGGGCT
65 ATCGGCCCGATCCCCCT-ATCGTGCTATCGATCCCGCTGCCAAAACCCTCGGTCTGGCTGGGGCT
30179545 TAGACATTGAATGAACTCCCTATGCCTAAG
129 TAGACATTGAATGAACTCCCTATGCCTAAG
* * * * *
30179575 CCAACCCAC-AAATTGGGTGTGCGGGCGCTCAACCGACCGGAGAGGCATAATGTGCAAGTCGAGG
1 CCAACCCACGAAA-TGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGG
* * * *
30179639 ATCAGCCCGATCCCCCTATTCGTGTTGTCGATCCCGCTGCCGGTCCTACTGCCACAACCCTCAGT
65 ATCGGCCCGATCCCCCTA-TCGTGCTATCGATCCCGCT----G-CC-A-----A-AACCCTCGGT
* * ***
30179704 -TGGACTGGGGCTTAGACATGGTATGAACTTTGTATGCCTAAG
117 CTGG-CTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAG
* ** ** * * * * *
30179746 CCAACCCACAAAATCAGCGTGCGGGTACTCAGCC-AGCCAGAGAGGCAGAATGCGTAAGCTGAGG
1 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGCATAATGCGCAAGCCGGGG
*
30179810 ATCGACCCGATCCCCCCTAT-GTGCT
65 ATCGGCCCGAT-CCCCCTATCGTGCT
30179835 GCCGATCCTG
Statistics
Matches: 576, Mismatches: 127, Indels: 54
0.76 0.17 0.07
Matches are distributed among these distances:
157 8 0.01
158 193 0.34
159 244 0.42
160 10 0.02
163 1 0.00
164 2 0.00
165 1 0.00
170 9 0.02
171 98 0.17
172 10 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGA
TCGGCCCGATCCCCCTATCGTGCTATCGATCCCGCTGCCAAAACCCTCGGTCTGGCTGGGGCTTA
GACATTGAATGAACTCCCTATGCCTAAG
Found at i:30179812 original size:171 final size:171
Alignment explanation
Indices: 30179516--30179825 Score: 394
Period size: 171 Copynumber: 1.8 Consensus size: 171
30179506 ATTGGTCCCG
* *
30179516 CTGCCAAAACCCTCGGTCTGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCAAAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * * * * *
30179581 CACAAATTGGGTGTGCGGGCGCTCAACCGACCGGAGAGGCATAATGTGCAAGTCGAGGATC-AGC
66 CACAAAATCAGCGTGCGGGCACTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGA-C
30179645 CCGATCCCCCTATTCGTGTTGTCGATCCCGCTGCCGGTCCTA
130 CCGATCCCCCTATTCGTGTTGTCGATCCCGCTGCCGGTCCTA
* * ***
30179687 CTGCCACAACCCTCAGT-TGGACTGGGGCTTAGACATGGTATGAACTTTGTATGCCTAAGCCAAC
1 CTGCCAAAACCCTCAGTCTGG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
30179751 CCACAAAATCAGCGTGCGGGTACTCAGCC-AGCCAGAGAGGCAGAATGCGTAAG-CTGAGGATCG
65 CCACAAAATCAGCGTGCGGGCACTCAACCGA-CCAGAGAGGCAGAATGCGCAAGTC-GAGGATCG
30179814 ACCCGATCCCCC
128 ACCCGATCCCCC
30179826 CTATGTGCTG
Statistics
Matches: 117, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
170 5 0.04
171 111 0.95
172 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (171 bp):
CTGCCAAAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACAAAATCAGCGTGCGGGCACTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACC
CGATCCCCCTATTCGTGTTGTCGATCCCGCTGCCGGTCCTA
Found at i:30179922 original size:26 final size:26
Alignment explanation
Indices: 30179884--30179936 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30179874 CTGGTCTAAT
30179884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30179910 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30179936 C
1 C
30179937 CAAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30180312 original size:159 final size:158
Alignment explanation
Indices: 30179909--30180526 Score: 519
Period size: 170 Copynumber: 3.8 Consensus size: 158
30179899 AACTCCGTAT
* * *
30179909 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * **
30179974 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGGTCCCCCTTGCGTACTGTCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTACCGATCC
* * * * *
30180039 TGCTGCCACAACCCTCGATCCG-GTCCGA
131 TACTGCCACAACCCTCGGTCCGACT-GGG
* * * * * * * *
30180067 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAA-CTCAACTCACGAAACAAGTGTACAGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCACTC
* * * * * * ** * *
30180130 AG-CCAGTC-GAAAGGCCATAATGCGTAGGCCAAGGATCGACCCGATCCCACTTTGCGTGCTACC
64 AGTCGA-CCGGAGAGG-CAGAATGCGCAAGCCGGGGATCGACCCGGTCCC-CCTTGCGTGCTACC
* *
30180193 GGTCCTACTGCCACAATCCTCGGTCCGACTGGG
126 GATCCTACTGCCACAACCCTCGGTCCGACTGGG
* * * *
30180226 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
30180291 -CTGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTAACAATC
66 TC-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCT----A-C
* * * *
30180355 CAGCTGCCAATCCCGTTGCCAAAACCCACGGTCCGACTGGG
125 C-GAT-CC--T-AC--TGCCACAACCCTCGGTCCGACTGGG
* * *
30180396 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * **
30180461 TCGCCCGGAGAGGCAGAATGTGCAAGCCGGGGATAGACTCGGTCCCCCCTGCATGCTGTCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTACCGATCC
30180526 T
131 T
30180527 GCCGCTGGTC
Statistics
Matches: 359, Mismatches: 78, Indels: 43
0.75 0.16 0.09
Matches are distributed among these distances:
157 9 0.03
158 84 0.23
159 112 0.31
160 9 0.03
161 1 0.00
162 1 0.00
163 4 0.01
164 4 0.01
165 3 0.01
167 1 0.00
168 1 0.00
170 129 0.36
171 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTACCGATCC
TACTGCCACAACCCTCGGTCCGACTGGG
Found at i:30180605 original size:26 final size:26
Alignment explanation
Indices: 30180567--30180619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30180557 CTGGTCCAAT
*
30180567 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30180593 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30180619 C
1 C
30180620 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30180646 original size:683 final size:680
Alignment explanation
Indices: 30179225--30181023 Score: 2096
Period size: 683 Copynumber: 2.6 Consensus size: 680
30179215 TCCGACTGGG
* * * *
30179225 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
30179290 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCCCCTACGTACTATCGATCC
66 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGGTCCCCCATACGTACTATCGATCC
* ** * * * * * *
30179355 TACTATCGTAACCCTTGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
131 TGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * *
30179420 CCCACGAAACGAGCGTGCGGGCGCTGAGCTC-GTTGAAGAGGCATAATGCGCAAGCCGGGGATCG
196 CCCACGAAACAAGTGT-CGGGCGCTGAGC-CAGTCGAA-AGGCATAATGCGCAAGCCGAGGATCG
* ** ** * * *
30179484 GCCCGAT-CCCTTTCAGCCAGCTATTGGTCCCGCTGCCAAAACCCTCGGTCTGGCTGGGGCTTAG
258 ACCCGATCCCCTTT--GCGTGCTACCGGT-CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAG
* * * *
30179548 ACATTGAATGAACTCCCTATGCCTAAGCCAACCCAC-AAATTGGGTGTGCGGGCGCTCAACCGAC
320 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-CGGGTGTGCGGGCGCTCAGCTGAC
* * * * * ** * *
30179612 CGGAGAGGCATAATGTGCAAGTCGAGGATC-AGCCCGAT-CCCCCTATTCGTGTTGTCGATCCCG
384 CGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCCTA-TCGTGCTAACAATCCAG
** * * * ** * *
30179675 CTGCCGGTCCTACTGCCACAACCCTCAGTTGGACTGGGGCTTAGACATGGTATGAACTTTGTATG
447 CTGCCAATCCCACTGCCAAAACCCACAGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATG
* *
30179740 CCTAAGCCAACCCACAAAATCAGCGTGCGGGTACTCAGCCAGCCAGAGAGGCAGAATGCGTAAGC
512 CCTAAGCCAACCCACAAAATCAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGC
* * ** * * * *
30179805 TGAGGATCGACCCGATCCCCCCTATGTGCTGCCGATCCTGCTGTTGGTCTGGCTGCCACAACCCT
577 CGAGGATAGACCCGATCCCCCCTACATGCTGCCGATCCTGCCGCTGGTCCGACTGCCACAACCCT
*
30179870 CGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
642 CGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* *
30179909 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
30179974 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGGTCCCCCTTGCGTACTGTCGATCC
66 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGGTCCCCCATACGTACTATCGATCC
** * *
30180039 TGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAA
131 TGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * * * *
30180104 CTCACGAAACAAGTGTACAGGCACTGAGCCAGTCGAAAGGCCATAATGCGTAGGCCAAGGATCGA
196 CCCACGAAACAAGTGT-CGGGCGCTGAGCCAGTCGAAAGG-CATAATGCGCAAGCCGAGGATCGA
* *
30180169 CCCGATCCCACTTTGCGTGCTACCGGTCCTACTGCCACAATCCTCGGTCCGACTGGGGCTTAGAC
259 CCCGATCCC-CTTTGCGTGCTACCGGTCC-GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGAC
**
30180234 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGCTGACCGG
322 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCTGACCGG
*
30180299 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTA-CGTGCTAACAATCCAGCTGCC
387 AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTATCGTGCTAACAATCCAGCTGCC
** *
30180363 AATCCCGTTGCCAAAACCCACGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAA
452 AATCCCACTGCCAAAACCCACAGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAA
* * * * * * *
30180428 GCCAACCCACGAAATGAGTGTGCGGGCACTCAGTC-GCCCGGAGAGGCAGAATGTGCAAGCCGGG
517 GCCAACCCACAAAATCAGCGTGCGGGCACTCAGCCAG-CCAGAGAGGCAGAATGCGCAAGCCGAG
* * * * * * * *
30180492 GATAGACTCGGTCCCCCCTGCATGCTGTCGATCCTGCCGCTGGTCCGATTGTCGCAACCCTCGGT
581 GATAGACCCGATCCCCCCTACATGCTGCCGATCCTGCCGCTGGTCCGACTGCCACAACCCTCGAT
*
30180557 CTGGTCCAATCTTAGACTGGGAATGAGCTCCGTAT
646 CTGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
*
30180592 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * *
30180657 TCGATCGGAGAGGTAGAATGCGTAAGTCGGGGACCAACCCGATCCCCCATACGTGCTATCTATCT
66 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGGTCCCCCATACGTACTATCGATCC
* *
30180722 TGCTGCCGTAACCCTC-ATTTTGGTCCGATCTTAGATTGGGAATGAACT-TCGTATGCCTAAGTC
131 TGCTGCCGTAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTC
** * * *
30180785 AACCCACGAAACGAACGTG-CGGGCGCTGAGTTGATTGGAAAGGCATAATGCGCAAGTCGAGGAT
194 AACCCACGAAAC-AA-GTGTCGGGCGCTGAG-CCAGTCGAAAGGCATAATGCGCAAGCCGAGGAT
* * *
30180849 C-AGCCC-AGTCCCCCTCTGCGTGCTACCGGTACCGCTGCCACAACCCGCGGTCC-AGCTAGGGC
256 CGA-CCCGA-T-CCCCTTTGCGTGCTACCGGT-CCGCTGCCACAACCCTCGGTCCGA-CTGGGGC
* * * *
30180911 TTAGACATGGTATGAACTCGCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGCGCTCAG-T
316 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCT
* * * *
30180975 CGACCGGAGAGGTAGAATACGCAAGCTGAGGATCGGCCCGGTCCCCCCT
381 -GACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCT
30181024 GCATGCTGTC
Statistics
Matches: 944, Mismatches: 151, Indels: 41
0.83 0.13 0.04
Matches are distributed among these distances:
682 7 0.01
683 560 0.59
684 357 0.38
685 16 0.02
686 4 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (680 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGGTCCCCCATACGTACTATCGATCC
TGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCACGAAACAAGTGTCGGGCGCTGAGCCAGTCGAAAGGCATAATGCGCAAGCCGAGGATCGACC
CGATCCCCTTTGCGTGCTACCGGTCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCTGACCGGAGAG
GCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTATCGTGCTAACAATCCAGCTGCCAATC
CCACTGCCAAAACCCACAGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCA
ACCCACAAAATCAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATAG
ACCCGATCCCCCCTACATGCTGCCGATCCTGCCGCTGGTCCGACTGCCACAACCCTCGATCTGGT
CCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:30181827 original size:26 final size:26
Alignment explanation
Indices: 30181788--30181839 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30181778 CTCAAAATCT
*
30181788 TTAGACTGGAAATGAACTCCGTATGC
1 TTAGACTGGAAATGAACTCCATATGC
30181814 TTAGACATGG-AATGAACTCCATATGC
1 TTAGAC-TGGAAATGAACTCCATATGC
30181840 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCATATGC
Found at i:30182103 original size:159 final size:159
Alignment explanation
Indices: 30181813--30182313 Score: 550
Period size: 159 Copynumber: 3.2 Consensus size: 159
30181803 ACTCCGTATG
* * *
30181813 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * ** * *
30181877 TCGGCTGAAGAGGCAGAATGCGCAAGCCTGGGATCGGCCCGATCCTCCCCAACGTGCTGTCAATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATC
* *
30181942 CTGCTGCCACAACCCTTGATCTGATCT-GAT
129 CTGCTGCCACAACCCTCGGTCTGATCTCGAT
* * * *
30181972 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * *
30182037 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGCCGGTCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATCC
* * * **
30182102 TGTTGCCACAACCCTCGGTCCGA-CTGGGG
130 TGCTGCCACAACCCTCGGTCTGATCTCGAT
* **
30182131 CTTAGACAT-GGAATGAACTCCCTATGCCT-A-TCCAACCCACGAAACGGGCGTGCGGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACAAGCGTGCGGGCGCTCA
* * ** *
30182193 GCCGACCGGAGAGGCAGAATGCACAAGGGGGGATCGGCCCGGT-CCCCCCTGCGTGCTACCGATC
64 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATC
* * *
30182257 CTGCTACCGCAACCCTCGGTCTGGT-TCGAT
129 CTGCTGCCACAACCCTCGGTCTGATCTCGAT
* *
30182287 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
30182314 TTAGACTGGG
Statistics
Matches: 284, Mismatches: 51, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
155 1 0.00
156 62 0.22
157 13 0.05
158 56 0.20
159 151 0.53
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGGTCTGATCTCGAT
Found at i:30182316 original size:26 final size:26
Alignment explanation
Indices: 30182287--30182339 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30182277 CTGGTTCGAT
*
30182287 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30182313 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30182339 C
1 C
30182340 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30182823 original size:11 final size:11
Alignment explanation
Indices: 30182807--30182839 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
30182797 CGTTTAGGCT
30182807 CTCCGACGATG
1 CTCCGACGATG
30182818 CTCCGACGATG
1 CTCCGACGATG
30182829 CTCCGACGATG
1 CTCCGACGATG
30182840 ATGTCCTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:30183859 original size:26 final size:26
Alignment explanation
Indices: 30183830--30183882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30183820 CTGATCCGAT
30183830 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
30183856 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
30183882 C
1 C
30183883 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:30184493 original size:159 final size:157
Alignment explanation
Indices: 30184236--30184738 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 157
30184226 ACTCCATTTG
* * * * * * * ** **
30184236 CTTAGACATGGAATAAACTCCGTATGTCGAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAAT
1 CTTAGACTTGGAATGAACTCCATATG-CTAAGCCAACCCACGAAACGAGCCTGCGAGCACTCAGC
** *** * *
30184301 CGACCAAAGAGGCAGAATGTGTAAGCCAGGGATCGACCCGGTTCCCTCCTGTGTGCTGTCGATCC
65 CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGG-TCCCTCCTGCGTGCTGCCGATCC
*
30184366 TACTGCCGCAACCCTCGGTCCGATCCGAT
129 TGCTGCCGCAACCCTCGGTCCGATCCGAT
* * * * *
30184395 CTTAGA-TTGGGAATGAACTCCATATGCATAAGTCAACCTATGAAACGAGCGTGCGAGCACTGAG
1 CTTAGACTT-GGAATGAACTCCATATGC-TAAGCCAACCCACGAAACGAGCCTGCGAGCACTCAG
* * * * * *
30184459 CCGATCGGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTC
64 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCTC-CTGCGTGCTGCCGATC
* * * **
30184524 CTGCTGCCACAACCCTCAGTCCGGCTGGGGA-
128 CTGCTGCCGCAACCCTCGGTCC-GAT-CCGAT
* * * **
30184555 -TTAGACATGGAATGAACTCCCA-ATGTCTAAGCCAACCCACGAAACGGGCCTGCGGGTGCTCAG
1 CTTAGACTTGGAATGAACT-CCATATG-CTAAGCCAACCCACGAAACGAGCCTGCGAGCACTCAG
* * * * *
30184618 CCGACCGGAGAGGCAGAATGCGCACGCCAGGGATCGACCC-GACCCTCCTACGTGCTACCGATCC
64 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCTCCTGCGTGCTGCCGATCC
* * * *
30184682 TGCTACCGCAACCCTCGATCCGGTCTGAT
129 TGCTGCCGCAACCCTCGGTCCGATCCGAT
*
30184711 CTTAGACTTGGAATGAACTCCGTATGCT
1 CTTAGACTTGGAATGAACTCCATATGCT
30184739 TAGACTAGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
155 2 0.01
156 6 0.02
157 51 0.19
158 12 0.04
159 190 0.70
160 7 0.03
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACTTGGAATGAACTCCATATGCTAAGCCAACCCACGAAACGAGCCTGCGAGCACTCAGCC
GACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCTCCTGCGTGCTGCCGATCCTG
CTGCCGCAACCCTCGGTCCGATCCGAT
Found at i:30184740 original size:26 final size:26
Alignment explanation
Indices: 30184711--30184763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30184701 CCGGTCTGAT
*
30184711 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
30184737 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30184763 C
1 C
30184764 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30185310 original size:159 final size:156
Alignment explanation
Indices: 30184869--30185371 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 156
30184859 GTCGATCCCA
* * * * *
30184869 CTGTCGGTCCTGCTGTCACAACCCTCAGTCCGGCTGGGGCTTAGACATGTG-GTGAACTCTGTAT
1 CTGTCGATCCTGCTGCCACAACCCTCGGTCCGGCTGCGGCTTAGACATG-GAATGAACTCTGTAT
* * * * * *
30184933 GCCTAAGCCAACCAATGAAACGAGCGTACAGGCGCTCAGCCGGCTGCAAAGGCAGAATGCACAAA
65 GCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG-CGGCTG-AGAGGCAAAATGCGCAAG
* * * * *
30184998 TCGAGGATCGGGCTTGGTCCCCCCTGTGTA
128 TCGGGGATC-GGCCTAGTCCCCCCTGCGTG
* * * * * * *
30185028 CTGTCAATCCTGCTACCATAACCCTCGGTCTGG-TCCGATCTTAGACAGGGAATGAACTCTGTAT
1 CTGTCGATCCTGCTGCCACAACCCTCGGTCCGGCTGCG-GCTTAGACATGGAATGAACTCTGTAT
* * * * * * * *
30185092 GCCTAAGTCAACCCATGAAACGAGCATACGGGCGTTGAGCCGATCGGAGATGCATAATGCGCAAG
65 GCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG-CG-GCTGAGAGGCAAAATGCGCAAG
*
30185157 TCGGGGATCGACCTAGTCCCCCTCTGCGTG
128 TCGGGGATCGGCCTAGTCCCCC-CTGCGTG
* **
30185187 CTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGCGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGATCCTGCTGCCACAACCCTCGGTCCGGCTGCGGCTTAGACATGGAATGAACTCTGTATG
* * * *
30185252 CCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGTCGGCTAGAGAGGCAAAATGCGCAAGC
66 CCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG-CGGCT-GAGAGGCAAAATGCGCAAGT
* *
30185317 CAGGGATCGGCC-CGATCCCCCCTGCGTG
129 CGGGGATCGGCCTAG-TCCCCCCTGCGTG
** **
30185345 CTACCGATCCTGCTGCTGCAACCCTCG
1 CTGTCGATCCTGCTGCCACAACCCTCG
30185372 ATCTGGTTCG
Statistics
Matches: 275, Mismatches: 62, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
158 44 0.16
159 226 0.82
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (156 bp):
CTGTCGATCCTGCTGCCACAACCCTCGGTCCGGCTGCGGCTTAGACATGGAATGAACTCTGTATG
CCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCGGCTGAGAGGCAAAATGCGCAAGTCG
GGGATCGGCCTAGTCCCCCCTGCGTG
Found at i:30186278 original size:159 final size:155
Alignment explanation
Indices: 30185853--30186279 Score: 364
Period size: 159 Copynumber: 2.7 Consensus size: 155
30185843 AACTCCGTAT
* * * * *
30185853 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * * * *
30185918 CCGGTCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCACGGA-CCCCCTAGCGTGCTGCTTATC
66 CCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGAC-CCGATCCCCCTAGCGTGCTGCGTACC
*
30185982 CTGCCACAACCCTCGGTTCGATCTAA
130 CTGCCACAACCCTCGGTTCGAGCTAA
* ** * * * *
30186008 TCTTAGAC-TGGGAATGAACTCTGTATGTATAAGTCAACCCACAAAACGAACGA-GCGGGCG-TT
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGC-ATGCGGGCGCTC
* * * * * ** * * * *
30186070 GAGCTAGTC-GAAGAGGCATAATGCGTAAGTCGAAGATCGACTCGGTCCCCCTCTGTGTGCTGTC
64 AACCGA-TCAG-AGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCT-AGCGTGCTG-C
* * **
30186134 GGTCCCGCTGCCACAACCCTTGG-TCTG-GCTGGG
125 -GTACC-CTGCCACAACCCTCGGTTC-GAGCT-AA
* *
30186167 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
*
30186232 CCGATCAGAGAGGCAGCATGCGTAAGCCGGGGATCGACCCGATCCCCC
66 CCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCC
30186280 CTACATGCTG
Statistics
Matches: 203, Mismatches: 54, Indels: 26
0.72 0.19 0.09
Matches are distributed among these distances:
154 5 0.02
155 78 0.38
156 7 0.03
157 1 0.00
158 7 0.03
159 99 0.49
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
CCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTAGCGTGCTGCGTACCC
TGCCACAACCCTCGGTTCGAGCTAA
Found at i:30186759 original size:26 final size:26
Alignment explanation
Indices: 30186701--30186752 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
30186691 CTCGGTCCGG
30186701 TCCA-ATG-TTAGACTGGGAATGAAC
1 TCCATATGCTTAGACTGGGAATGAAC
*
30186725 TCCATATGCTTAGACTTGGAATGAAC
1 TCCATATGCTTAGACTGGGAATGAAC
30186751 TC
1 TC
30186753 TGTATGCCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.16
25 3 0.12
26 18 0.72
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TCCATATGCTTAGACTGGGAATGAAC
Found at i:30186821 original size:368 final size:361
Alignment explanation
Indices: 30186434--30187551 Score: 966
Period size: 368 Copynumber: 3.1 Consensus size: 361
30186424 AAAAGTTAGT
*
30186434 CGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATCCCATT
1 CGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTG-CGAT-CCATT
*
30186499 ACCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGGCATGGAATCAACTCCGTATGCC
64 -CCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATCAACTCCGTATGCC
* * * *
30186564 TAAGCCAACCCACGAAATGAGTATGAGGGCGCTTAGCC-AGTTGGAGAGGTAGAATGTGCAAGCC
128 TAAGCCAACCCACGAAATGAGTATGAGGGCGCTCAGCCGA-TCGAAGAGGCAGAATGTGCAAGCC
* * * *
30186628 AGGGATCGACCCGGTCCCCCCCTGTGTGCTACCAATCCTACTGCTGGTCCTGCTACCGCAACCCT
192 AGGGATCGGCTCGGT-CCCCCCTGTGTGCTATCGAT-CTACTGCTGGTCCTGCTA-CGCAACCCT
30186693 CGGTCCGGTCCAATGTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTCTGTAT
254 CGGTCCGGTCCAATGTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTCTGTAT
* *
30186758 GCCTAAGCGAACCCACGAAACGAGCGTGCAGGTGCTCAACCGAC
319 GCCTAAGC-AACCCACGAAACGAGTGTGCAGGTGCTCAACCGGC
* ** * *
30186802 CGGAGAGGCAGAATGCACAAGCTGGGGATTGGCTC-AGTCCCTC-CTGC---ATGC--T--A-T-
1 CGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGA-TCCCTCTCTGCGTGCTGCGATCCATTC
* * ** * * * * ** *
30186856 CGATCCTGCTATCGTAACCTTCGATCTGGTCCA-ATCTTAGAC-TGGGAATGAACTCCGTATGCC
65 CGGTCCTGCTACCACAACCCTCGGTCCGG-CTAGGGCTTAGACAT-GGAATCAACTCCGTATGCC
* * * * * * * * * *
30186919 AAAGTCAACCCACAAAACATGCGTA-CA-GGCACTGAGCCGATCGAAAAGGCATAATGCGCAAG-
128 TAAGCCAACCCAC-GAA-ATGAGTATGAGGGCGCTCAGCCGATCGAAGAGGCAGAATGTGCAAGC
* * * ** *
30186981 CTGAGGATCGGCTCGAG-CCCTCTTACGTGCTATCGATC--CTGCT-G---T-C-A--CAACCCA
191 CAG-GGATCGGCTCG-GTCCCCCCTGTGTGCTATCGATCTACTGCTGGTCCTGCTACGCAACCCT
* * ** * * * * *
30187035 CGGCCCTGTCTGATCTTAGACTAGGAATGATCTCCGTATGCTTAGA-TTGGGGATGAACTCTGTA
254 CGGTCCGGTCCAATGTTAGACTGGGAATGAACTCCATATGCTTAGACTT-GGAATGAACTCTGTA
* * * *
30187099 AGCCTATGTCAACCCACGAAACGAGTGTGCAGACGCTCAGTCGATCGAAGAAGTCGGT
318 TGCCTAAG-CAACCCACGAAACGAGTGTGCAG--G-T--G-C--TC----AA-CCGGC
* *** * * * * *
30187157 CGGAGAGGCATAATATGCAAGTCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGATCCTGTT
1 CGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTG-CGATCC-ATT
* * *
30187222 GCCAGTCCTGCTGCCACAACCCTCGGTCCGACT-GGGACTTAGACATGGAATCAACTCCGTATGC
64 -CCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGGG-CTTAGACATGGAATCAACTCCGTATGC
* * *
30187286 CTAGGCCAACCCACGAAATGAGCATGAGGGCGCTCAGTCGATCGAAGAGGCAGAATGTGCAAGCC
127 CTAAGCCAACCCACGAAATGAGTATGAGGGCGCTCAGCCGATCGAAGAGGCAGAATGTGCAAGCC
*
30187351 AGGGATCGGCTCGGTCCCCTCTGTGTGCTATCGATCTACTGCTGGTCCTGCTATCGCAACCCTCG
192 AGGGATCGGCTCGGTCCCCCCTGTGTGCTATCGATCTACTGCTGGTCCTGCTA-CGCAACCCTCG
* * * *
30187416 ATCCGATCCAATGTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTTGTATGC
256 GTCCGGTCCAATGTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTCTGTATGC
* *
30187481 CTAAGCCAACCC-CGAAATGAGTGTGCAGGCGCTCAACCGGC
321 CTAAG-CAACCCACGAAACGAGTGTGCAGGTGCTCAACCGGC
* *
30187522 CGGAGAGGTAGAATGCACAAGCCAGGGATC
1 CGGAGAGGCAGAATGCACAAGCCGGGGATC
30187552 GACTCAGTCC
Statistics
Matches: 563, Mismatches: 131, Indels: 115
0.70 0.16 0.14
Matches are distributed among these distances:
341 2 0.00
342 85 0.15
343 1 0.00
344 1 0.00
345 2 0.00
346 1 0.00
347 2 0.00
348 1 0.00
350 3 0.01
351 5 0.01
353 1 0.00
354 19 0.03
355 123 0.22
356 11 0.02
357 7 0.01
358 1 0.00
359 2 0.00
360 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
364 2 0.00
365 26 0.05
366 8 0.01
367 10 0.02
368 146 0.26
369 3 0.01
370 7 0.01
371 1 0.00
372 1 0.00
373 1 0.00
374 1 0.00
375 1 0.00
376 2 0.00
378 15 0.03
379 67 0.12
380 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (361 bp):
CGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTGCGATCCATTCC
GGTCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATCAACTCCGTATGCCTAA
GCCAACCCACGAAATGAGTATGAGGGCGCTCAGCCGATCGAAGAGGCAGAATGTGCAAGCCAGGG
ATCGGCTCGGTCCCCCCTGTGTGCTATCGATCTACTGCTGGTCCTGCTACGCAACCCTCGGTCCG
GTCCAATGTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTCTGTATGCCTAAG
CAACCCACGAAACGAGTGTGCAGGTGCTCAACCGGC
Found at i:30187021 original size:158 final size:158
Alignment explanation
Indices: 30186733--30187023 Score: 363
Period size: 158 Copynumber: 1.8 Consensus size: 158
30186723 ACTCCATATG
* * * * * **
30186733 CTTAGACTTGGAATGAACTCTGTATGCCTAAGCGAACCCACGAAACGAGCGTGCAGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCAAAGCGAACCCACAAAACGAGCGTACAGGCACTCAAC
* * * * *
30186798 CGACCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCTCAGTCCCTCCTGCATGCTATCGATCCT
66 CGACCGAAAAGGCAGAATGCACAAGCTGAGGATCGGCTCAGTCCCTCCTACATGCTATCGATCCT
30186863 GCTATCGTAACCTTCGATCTGGTCCAAT
131 GCTATCGTAACCTTCGATCTGGTCCAAT
*
30186891 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTC-AACCCACAAAAC-ATGCGTACAGGCACTGA
1 CTTAGACTGGGAATGAACTCCGTATGCCAAAG-CGAACCCACAAAACGA-GCGTACAGGCACTCA
* * * * * *
30186954 GCCGATCGAAAAGGCATAATGCGCAAGCTGAGGATCGGCTCGAG-CCCTCTTACGTGCTATCGAT
64 ACCGACCGAAAAGGCAGAATGCACAAGCTGAGGATCGGCTC-AGTCCCTCCTACATGCTATCGAT
30187018 CCTGCT
128 CCTGCT
30187024 GTCACAACCC
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.01
158 107 0.96
159 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCAAAGCGAACCCACAAAACGAGCGTACAGGCACTCAAC
CGACCGAAAAGGCAGAATGCACAAGCTGAGGATCGGCTCAGTCCCTCCTACATGCTATCGATCCT
GCTATCGTAACCTTCGATCTGGTCCAAT
Found at i:30187458 original size:26 final size:24
Alignment explanation
Indices: 30187422--30187472 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 24
30187412 CTCGATCCGA
30187422 TCCAATGTTAGAC-TGGGAATGAAC
1 TCCAATGTTAGACAT-GGAATGAAC
30187446 TCCATATGCTTAGACATGGAATGAAC
1 TCCA-ATG-TTAGACATGGAATGAAC
30187472 T
1 T
30187473 TTGTATGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 4 0.17
25 3 0.12
26 16 0.67
27 1 0.04
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (24 bp):
TCCAATGTTAGACATGGAATGAAC
Found at i:30193988 original size:26 final size:26
Alignment explanation
Indices: 30193949--30194001 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30193939 GGCTCAAAAT
*
30193949 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30193975 CTTAGACATA-GAATGAACTCCGTATG
1 CTTAGAC-TAGGAATGAACTCCGTATG
30194001 C
1 C
30194002 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30194848 original size:26 final size:26
Alignment explanation
Indices: 30194819--30194871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30194809 CTGATCCGAT
*
30194819 CTTAGAC-TGGAAATGAACTCTGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
30194845 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30194871 C
1 C
30194872 CCCACGAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30195092 original size:158 final size:157
Alignment explanation
Indices: 30194872--30195336 Score: 513
Period size: 158 Copynumber: 2.9 Consensus size: 157
30194862 CTCCGTATGC
* * * * ** * *
30194872 CCCACGAAATGAGCGTGCAGGCGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCGA
1 CCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCGAAGAGGCATAATACGCAAGCCAGGGATCGG
* * * *
30194937 CCTAGTCCCCCCTGTGTGCTGTTGATCCTGCTACCGTAACCCTCGGTCTGATCCGATCTTAGACT
66 CC-AGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACT
* *
30195002 GGGAATGAACTTCGTATGCCTAAGTCAA
130 GGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
30195030 CCCATGAAACGAGTGTACGGGCGCTGAGCCGGCCGAAGAGGCATAATATGCCAGTTAGGGATCGG
1 CCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCGAAGAGGCATAATACGCAAGCCAGGGATCGG
* * * * * * * **
30195095 CCAGTCCCCCTCTGCGTGCTGCCGGTCCCGTTGCCACAACCCTCGGTCTG-GCTAGGGCTTAGAC
66 CCAGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGATC-CGATCTTAGAC
*
30195159 AT-GGAATGAACTCCCTATGCCTAAGCCAA
129 -TGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
30195188 CCCATGAAACGGGCGTACGGGCTCTCAGTCGGCTGAAGAGGCAAAATACGTAAGCCAGGGATCGG
1 CCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCGAAGAGGCATAATACGCAAGCCAGGGATCGG
* *
30195253 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTC-CAGTCCGATCTTAGAC
66 -CCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGAC
30195317 TGGGAATGAACTCCGTATGC
129 TGGGAATGAACTCCGTATGC
30195337 TTAGACATGG
Statistics
Matches: 246, Mismatches: 54, Indels: 14
0.78 0.17 0.04
Matches are distributed among these distances:
157 10 0.04
158 225 0.91
159 11 0.04
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (157 bp):
CCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCGAAGAGGCATAATACGCAAGCCAGGGATCGG
CCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAA
Found at i:30195339 original size:26 final size:26
Alignment explanation
Indices: 30195310--30195362 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30195300 CCAGTCCGAT
*
30195310 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
30195336 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
30195362 C
1 C
30195363 CTAAGCCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30195479 original size:184 final size:184
Alignment explanation
Indices: 30195151--30195523 Score: 507
Period size: 184 Copynumber: 2.0 Consensus size: 184
30195141 TCTGGCTAGG
* * *
30195151 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* ** * *
30195216 TCGGCTGAAGAGGCAAAATACGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAACCGAAGAGGCAAAATACGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTCCTGTCGATCC
* * * *
30195281 TGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTGCCACAACCCTCGAT-CAGATCCGATCTTAGACAGGGAATGAACTCCGTAT
*
30195335 GCTTAGACATGGAATGAACTCCATATGCCTAAGCC-ACCCATGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * ** *
30195399 CCAACCGGAGTGGTAGAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTTGTGTCCTGTCGATC
66 CCAACCGAAGAGGCAAAATACGTAAGCCAGGGATCGGCCCGGTCCCCCC-TGCGTCCTGTCGATC
* * *
30195464 CTACTGCCACAACCCTCGATCTGATCTGATCTTAGACAGGGAATGAACTCTGTAT
130 CTACTGCCACAACCCTCGATCAGATCCGATCTTAGACAGGGAATGAACTCCGTAT
30195519 GCTTA
1 GCTTA
30195524 AGTCAACCCA
Statistics
Matches: 164, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 67 0.41
184 97 0.59
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCAACCGAAGAGGCAAAATACGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTCCTGTCGATCC
TACTGCCACAACCCTCGATCAGATCCGATCTTAGACAGGGAATGAACTCCGTAT
Found at i:30195631 original size:159 final size:159
Alignment explanation
Indices: 30195335--30195996 Score: 735
Period size: 159 Copynumber: 4.2 Consensus size: 159
30195325 AACTCCGTAT
* * * * * *
30195335 GCTTAGACATGGAATGAACTCCATATGCCTAAGCC-ACCCATGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCGCACTCAG
* * * * * * * *
30195399 CCAACCGGAGTGGTAGAATACGTAAGCTGGGGATCGGCCCGGTCCCCC-CTTGTGTCCTGTCGAT
66 CCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTC-TGCGTGCTGTCGAT
* * *
30195463 CCTA-CTGCCACAACCCTCGATCTGATCT-GA
130 CC-AGCTGCCACAACCCTCGGTCCG-GCTGGA
* * ** * * * * *
30195493 TCTTAGACAGGGAATGAACTCTGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCGCACTCAG
* * *
30195558 CCAACCGGAGAGGCATAATGCGCAAGCCAGGGAACGGCCCGGTCCCCCTCTGTGTGCTGTCGATC
66 CCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * *
30195623 CAGTTGCCATAACCCTCGGTCCGGCTGGG
131 CAGCTGCCACAACCCTCGGTCCGGCTGGA
* * * *
30195652 GCTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCACGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCGCACTCAG
*** *
30195717 CTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
66 CCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * *
30195782 CCGCTGCCACAACCCTTGGTCCGGCTGGG
131 CAGCTGCCACAACCCTCGGTCCGGCTGGA
* *
30195811 GCTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGCGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCGCACTCAG
*** * *
30195876 CTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCTCT-TGCGTGCTGTCGATC
66 CCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * *
30195940 CTGCTGCCCCAACCCTCGGTTCGGTCT-GA
131 CAGCTGCCACAACCCTCGGTCCGG-CTGGA
* *
30195969 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
30195997 TCAGACTGGG
Statistics
Matches: 436, Mismatches: 62, Indels: 12
0.85 0.12 0.02
Matches are distributed among these distances:
157 1 0.00
158 90 0.21
159 344 0.79
160 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCGCACTCAG
CCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
CAGCTGCCACAACCCTCGGTCCGGCTGGA
Found at i:30195731 original size:501 final size:491
Alignment explanation
Indices: 30194636--30195803 Score: 1376
Period size: 501 Copynumber: 2.4 Consensus size: 491
30194626 GGTTTGGCTA
**
30194636 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* ** * * * * * * * **
30194701 GAAATGAGCGTGTG-GGTGCTCAACCGGTCGGGGAGGTAGAATGCGCAAGTCGGGGATAAGCCCG
66 GAAACG-G-GTGTGCGGCACTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCG
* * *
30194765 GTCCCCCCTTGCGTGCTG-CTGATCCTGCTACCGCAACCCTCGAT-CTGATCCGATCTTAGACTG
129 GTCCCCCC-TGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCGGTCCAGATCCGATCTTAGACTG
* * *
30194828 GAAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCCCACGAAATGAGCGTGCAGG
192 GAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCCCACGAAATGAGCGTACAGG
* * * * * *
30194893 CGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCTAGTCCCCCCTGTGTGCTG
257 CGCTCAGCCAACCGAAGAGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCTGTGTCCTG
* * ** * *
30194958 TTGATCCTGCTACCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCT
322 TCGATCCTACTACCACAACCCTCGATCTGATCCGATCTTAGACAGGGAATGAACTTCGTATGCCT
* * * ** * * **
30195023 AAGTCAACCCATGAAACGAGTGTACGGGCGCTGAGCCGGCCGAAGAGGCATAATATGCCAGTTAG
387 AAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCAACCGAAGAGGCATAATACGCAAGCCAG
* * *
30195088 GGATCGGCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGTTG
452 GGAACGGCCAGTCCCCCTCTGCGTGCTGCCGATCCAGTTG
*
30195128 CCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * * *
30195193 GAAACGGGCGTACGGGCTCTCAG-TCGGCTGAAGAGGCAAAATACGTAAGCCAGGGATCGGCCCG
66 GAAACGGGTGTGC-GGCACTCAGCT-GGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCG
*
30195257 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGG
129 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGATCCGATCTTAGACTGGA
30195321 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCACCCATGAAATGAGCG
194 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCC----CCA--C--GAAATGAGCG
* * * * * ** * *
30195386 TACGGGCGCTCAGCCAACCGGAGTGGTAGAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTTG
251 TACAGGCGCTCAGCCAACCGAAGAGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCC-TG
* *
30195451 TGTCCTGTCGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACAGGGAATGAAC-TCT
315 TGTCCTGTCGATCCTACTACCACAACCCTCGATCTGATCCGATCTTAGACAGGGAATGAACTTC-
* * * * *
30195515 GTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCAACCGGAGAGGCATAATGCG
379 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCAACCGAAGAGGCATAATACG
* * *
30195580 CAAGCCAGGGAACGGCCCGGTCCCCCTCTGTGTGCTGTCGATCCAGTTG
444 CAAGCCAGGGAACGG-CCAGTCCCCCTCTGCGTGCTGCCGATCCAGTTG
* * * *
30195629 CCATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* *
30195694 GAAACGGGTGTGCACGCACTCAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGG
66 GAAACGGGTGTGC-GGCACTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGG
* * * *
30195759 TCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCC
130 TCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCC
30195804 GGCTGGGGCT
Statistics
Matches: 566, Mismatches: 92, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
490 3 0.01
491 89 0.16
492 111 0.20
495 3 0.01
497 1 0.00
499 59 0.10
500 119 0.21
501 146 0.26
502 35 0.06
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (491 bp):
CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGGGTGTGCGGCACTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGT
CCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGATCCGATCTTAGACTGGAAA
TGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCCCACGAAATGAGCGTACAGGCGCT
CAGCCAACCGAAGAGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCTGTGTCCTGTCGA
TCCTACTACCACAACCCTCGATCTGATCCGATCTTAGACAGGGAATGAACTTCGTATGCCTAAGT
CAACCCACGAAACGAGCGTACGGGCACTGAGCCAACCGAAGAGGCATAATACGCAAGCCAGGGAA
CGGCCAGTCCCCCTCTGCGTGCTGCCGATCCAGTTG
Found at i:30195859 original size:660 final size:659
Alignment explanation
Indices: 30194872--30196061 Score: 1634
Period size: 660 Copynumber: 1.8 Consensus size: 659
30194862 CTCCGTATGC
* * * *
30194872 CCCACGAAATGAGCGTGCAGGCGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCGA
1 CCCACGAAATGAGCGTGCAGGCACTCAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGAACGA
* * * * * *
30194937 CCTAGTCCCCCCTGTGTGCTGTTGATCCTGCTACCGTAACCCTCGGTCTGATCCGATCTTAGACT
66 CCCAGTCCCCCCTGTGTGCTGTCGATCCAGCTACCATAACCCTCGGTCGGATCCGAGCTTAGACT
* * * * ** * *
30195002 GGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTGAGCCGGCCGAA
131 GGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTACACGCACTCAGCCGGCCGAA
* * ** *
30195067 GAGGCATAATATGCCAGTTAGGGATCGGCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGTTGCCAC
196 GAGGCATAATACGCAAGCCAGGGATCGGCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
* *
30195132 AACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
261 AACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * *
30195197 CGGGCGTACGGGCTCTCAG-TCGGCTGAAGAGGCAAAATACGTAAGCCAGGGATCGGCCCGGTCC
326 CGGGCGTACGCGCACTCAGCT-GGCCGAAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGGTCC
*
30195261 CCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGA
390 CCCCTGCGTGCTGTCGATCCTGCTGCCCCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGA
* * * *
30195326 ACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CCACCCATGAAATGAGCGTAC
455 ACTCCGTATGCTCAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAAGAGCGTAC
*
30195389 GGGCGCTCAGCCAACCGGAGTGGTAGAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTTGTGT
519 GGGCACTCAGCCAACCGGAGTGGTAGAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTTGTGT
30195454 CCTGTCGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACAGGGAATGAACTCTGTAT
584 CCTGTCGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACAGGGAATGAACTCTGTAT
30195519 GCTTAAGTCAA
649 GCTTAAGTCAA
* * * *
30195530 CCCACGAAATGAGCGTGCGGGCACTGAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGAACGG
1 CCCACGAAATGAGCGTGCAGGCACTCAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGAACGA
* * * * * *
30195595 CCCGGTCCCCCTCTGTGTGCTGTCGATCCAGTTGCCATAACCCTCGGTCCGGCT-GGGGCTTAGA
66 CCCAGTCCCCC-CTGTGTGCTGTCGATCCAGCTACCATAACCCTCGGT-CGGATCCGAGCTTAGA
* * * *
30195659 CAT-GGAATGACCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCACGCACTCAGCTGGCC
129 C-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTACACGCACTCAGCCGGCC
* * * * *
30195723 GGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTG
193 GAAGAGGCATAATACGCAAGCCAGGGATCGG-CCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTG
* * *
30195788 CCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCCAC
257 CCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * *
30195853 GAAACGGGCGTGCGCGCACTCAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGG
322 GAAACGGGCGTACGCGCACTCAGCTGGCCGAAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGG
* * * * *
30195918 TCCCTCTTGCGTGCTGTCGATCCTGCTGCCCCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAA
387 TCCCCCCTGCGTGCTGTCGATCCTGCTGCCCCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAA
* **
30195983 TGAACTCCGTATGCTCAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGCGT
452 TGAACTCCGTATGCTCAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAAGAGCGT
**
30196048 GTGGGCACTCAGCC
517 ACGGGCACTCAGCC
30196062 GACCAGAGAG
Statistics
Matches: 452, Mismatches: 73, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
658 66 0.15
659 113 0.25
660 245 0.54
661 28 0.06
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (659 bp):
CCCACGAAATGAGCGTGCAGGCACTCAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGAACGA
CCCAGTCCCCCCTGTGTGCTGTCGATCCAGCTACCATAACCCTCGGTCGGATCCGAGCTTAGACT
GGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTACACGCACTCAGCCGGCCGAA
GAGGCATAATACGCAAGCCAGGGATCGGCCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
AACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTACGCGCACTCAGCTGGCCGAAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGGTCCC
CCCTGCGTGCTGTCGATCCTGCTGCCCCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTCAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAAGAGCGTACGG
GCACTCAGCCAACCGGAGTGGTAGAATACGTAAGCTGGGGATCGGCCCGGTCCCCCCTTGTGTCC
TGTCGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACAGGGAATGAACTCTGTATGC
TTAAGTCAA
Found at i:30196011 original size:26 final size:26
Alignment explanation
Indices: 30195973--30196022 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
30195963 GTCTGATCTT
30195973 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
* *
30195999 AGACTGGGGATGAACTCTGTATGC
1 AGACTGGGAATGAACTCCGTATGC
30196023 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:30196734 original size:26 final size:26
Alignment explanation
Indices: 30196695--30196747 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30196685 GGCTCAAAAT
30196695 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
30196721 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
30196747 C
1 C
30196748 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Done.