Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 325 of 402
Found at i:30197074 original size:159 final size:156
Alignment explanation
Indices: 30196711--30197173 Score: 434
Period size: 158 Copynumber: 2.9 Consensus size: 156
30196701 CTGAGAATGA
*
30196711 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
1 ACTCCG-A-GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTGCG
* * * * * * * * * *
30196776 GGCCCTCAGCCAGTCAGAGAGGCAGAATGTGCAAGTCGGGGATCGACCGGTCCCCC-CTGTGTGG
63 GGCACTCAG-CTGACCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCTCTGAGTGC
** * *
30196840 TGTCGATCCTACTGCCACAGCCCTCAGTCC
127 TGTCGATCCCGCTACCACAACCCTCAGTCC
* * * * * *
30196870 AGTCCGATCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGTGG
1 ACTCCGAGCTTAGACAT-GGAATGAACTC-CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG
* * * * *
30196934 GCACTGAGCTGACCGTAGAGGCATAATGCGTAAGCCGAGGATCGGCTCGATCCCCCTCTGCGTGC
64 GCACTCAGCTGACCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGATCCCCCTCTGAGTGC
* *
30196999 TATTGATCCCGCTACCACAACCCTC-GATCC
127 TGTCGATCCCGCTACCACAACCCTCAG-TCC
* * *
30197029 GACT-GGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCAT-AAACGGGCGTGCGG
1 -ACTCCGAGCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG
* * * * *
30197092 GCGCTCAG-TCGGCCGGAGAGGAAGAATGCGCAAGCCGGGGATCAGCCTGATCCTCCTCTGAGTG
64 GCACTCAGCT-GACC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GATCCCCCTCTGAGTG
30197156 CTGTCGATCCCGCTACCA
126 CTGTCGATCCCGCTACCA
30197174 GTCCTGCTAC
Statistics
Matches: 244, Mismatches: 48, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
156 5 0.02
157 80 0.33
158 86 0.35
159 68 0.28
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
ACTCCGAGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC
ACTCAGCTGACCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCTCTGAGTGCTGTC
GATCCCGCTACCACAACCCTCAGTCC
Found at i:30197157 original size:158 final size:154
Alignment explanation
Indices: 30196711--30197173 Score: 412
Period size: 157 Copynumber: 2.9 Consensus size: 154
30196701 CTGAGAATGA
*
30196711 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
1 ACTCCG-A-GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCA-TAAACGAGCGTGCG
* * * * * * * * * *
30196776 GGCCCTCAGCCAGTCAGAGAGGCAGAATGTGCAAGTCGGGGATCGACC-GGTCCCCCCTGTGTGG
62 GGCACTCAG-CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCTGATCCCCTCTGAGTGC
** * *
30196840 TGTCGATCCTACTGCCACAGCCCTCAGTCC
125 TGTCGATCCCGCTACCACAACCCTCAGTCC
* * * * * *
30196870 AGTCCGATCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGTGG
1 ACTCCGAGCTTAGACAT-GGAATGAACTC-CTATGCCTAAGCCAACCCAT-AAACGAGCGTGCGG
* * * * * * * *
30196934 GCACTGAGCTGACCGTAGAGGCATAATGCGTAAGCCGAGGATCGGCTCGATCCCCCTCTGCGTGC
63 GCACTCAGC-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCT-GAT-CCCCTCTGAGTGC
* *
30196999 TATTGATCCCGCTACCACAACCCTC-GATCC
125 TGTCGATCCCGCTACCACAACCCTCAG-TCC
* * *
30197029 GACT-GGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATAAACGGGCGTGCGGG
1 -ACTCCGAGCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCATAAACGAGCGTGCGGG
* *
30197093 CGCTCAGTCGGCCGGAGAGGAAGAATGCGCAAGCCGGGGATCAGCCTGATCCTCCTCTGAGTGCT
64 CACTCAG-CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCTGATCC-CCTCTGAGTGCT
30197158 GTCGATCCCGCTACCA
126 GTCGATCCCGCTACCA
30197174 GTCCTGCTAC
Statistics
Matches: 239, Mismatches: 51, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 79 0.33
158 77 0.32
159 75 0.31
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (154 bp):
ACTCCGAGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATAAACGAGCGTGCGGGCA
CTCAGCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCTGATCCCCTCTGAGTGCTGTCGA
TCCCGCTACCACAACCCTCAGTCC
Found at i:30197894 original size:26 final size:26
Alignment explanation
Indices: 30197858--30197910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30197848 CCAGTCCAAT
30197858 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
30197884 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30197910 C
1 C
30197911 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30198443 original size:26 final size:26
Alignment explanation
Indices: 30198405--30198457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30198395 GGCTTAAAAT
*
30198405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30198431 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30198457 C
1 C
30198458 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30198790 original size:159 final size:158
Alignment explanation
Indices: 30198430--30198868 Score: 477
Period size: 159 Copynumber: 2.8 Consensus size: 158
30198420 AACTCCGTAT
* ** *
30198430 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * ** *
30198495 TCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGAACGGCCTGGTCCCCCCTGCGTGCTGTTGATCT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCTGATCCCCCCTGTGTGCTGCCGATCC
** * **
30198560 TGCTGCTACAACCCTCGGTCTGGTCTGA
131 CACTGCGACAACCCTCGGTCCAGTCTGA
* * * * * *
30198588 TCTTAGAC-TGGGAGTGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * *
30198652 GCCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCAGTCTGATCCCCCTCTGTGTGCTGCCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCTGATCCCCC-CTGTGTGCTGCCGAT
* * *
30198717 CCCATTGCGACAACCCTTGGTCCAG-CTGGG
129 CCCACTGCGACAACCCTCGGTCCAGTCT-GA
* * * * *
30198747 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACACACGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
30198812 CCGGACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCCGATCCGCCCTGTGTGCT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCTGATCCCCCCTGTGTGCT
30198869 ATCTATCCTA
Statistics
Matches: 228, Mismatches: 49, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
157 1 0.00
158 103 0.45
159 123 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCTGATCCCCCCTGTGTGCTGCCGATCC
CACTGCGACAACCCTCGGTCCAGTCTGA
Found at i:30198942 original size:26 final size:26
Alignment explanation
Indices: 30198906--30198958 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30198896 CTGATCTGAT
*
30198906 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30198932 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30198958 C
1 C
30198959 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30199943 original size:159 final size:156
Alignment explanation
Indices: 30199650--30200152 Score: 510
Period size: 159 Copynumber: 3.2 Consensus size: 156
30199640 ACTCCATATG
** * **
30199650 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTTACGAAACGAGCGTGCCTGGCATTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGCGCTCAG
* ** *
30199715 CCGGTCAGAGAGGCAGAATGCGCAAGCTGAGAATCAACCCGGTCCCCCCTGCGTGCTGTCGATCA
65 CCGGTCAGAGAGGCAGAATGCGCAAGC-GAGGATCGGCCCGGTCCCCCCTGCGTGCT-TCGATCC
* *
30199780 TGCTGTCGCAACCCTCAGTTTGGTTTGAT
128 TGCTGTCGCAACCCTCAGTCTGGTTAGAT
* * * *
30199809 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
30199873 CCGGCCAAAGAGGCATAATGCGCAAGACGAGGATCGGCCTGGTCCCCCTCTACGTGCTTCTGATC
65 CCGGTCAGAGAGGCAGAATGCGCAAG-CGAGGATCGGCCCGGTCCCCC-CTGCGTGCTTC-GATC
* * * * **
30199938 CTGCTGCCACAACCCTCAATCTGGCTAGGG
127 CTGCTGTCGCAACCCTCAGTCTGGTTAGAT
* * * * *
30199968 CTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
30200033 CGGTCGGAGAGGCAGAATGCGCATGCCGGGGATTGGCCCGTTCCCCCCTGCGTG-TTGCCGATCC
66 CGGTCAGAGAGGCAGAATGCGCAAG-CGAGGATCGGCCCGGTCCCCCCTGCGTGCTT--CGATCC
* * **
30200097 TACTGTCGCAACCCTCGGTCCT-GTCCGAT
128 TGCTGTCGCAACCCTCAGT-CTGGTTAGAT
30200126 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30200153 TTAGACTAGG
Statistics
Matches: 277, Mismatches: 58, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 99 0.36
159 174 0.63
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCAGAGAGGCAGAATGCGCAAGCGAGGATCGGCCCGGTCCCCCCTGCGTGCTTCGATCCTGC
TGTCGCAACCCTCAGTCTGGTTAGAT
Found at i:30200155 original size:26 final size:26
Alignment explanation
Indices: 30200126--30200178 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30200116 CCTGTCCGAT
*
30200126 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
30200152 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
30200178 C
1 C
30200179 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:30201384 original size:170 final size:171
Alignment explanation
Indices: 30200854--30201340 Score: 554
Period size: 170 Copynumber: 2.9 Consensus size: 171
30200844 AACTCCCTAT
* ** * ** * *
30200854 GCTTAGACTAGGCATGAACTTCGTATGCCTAAGTTAACCCATGAAACGAGTGTGCAGGCACTCAG
1 GCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
* * * * * * *
30200919 TCGATCGGAGAGGCATATTGTGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGAT-
66 CCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATC
* *
30200983 CTCGCTGCCAGTCCTGCTACCACAACCCTCGGTCTAGCTGGG
131 CT-GCTGCCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGG
* * * *
30201025 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATTAGCATGAGGGTGCTCA
1 GCTTAGACTA-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCA
* * * *
30201089 GCTGGTCGGAGAGGCTGAATGAGCAAGCCGAGGATCGACCCGGT-CCCCTCTGCGTGCTACCGAT
65 GCCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
* * * * *
30201153 CCCGTTGCCGGTCCTACTACCACAATCCTTGGTCTGGCTGGG
130 CCTGCTGCCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGG
30201195 GCTTAGACATTA--AATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTC
1 GCTTAGAC--TAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTC
* * * * * *
30201258 AGCCGATTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCT-TGTGTGTTGCTGA
64 AGCCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGA
* *
30201322 TCCTACTGCTGGTCCTGCT
129 TCCTGCTGCCGGTCCTGCT
30201341 GTCGTAACCC
Statistics
Matches: 261, Mismatches: 49, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
170 171 0.66
171 89 0.34
173 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (171 bp):
GCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATC
CTGCTGCCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGG
Found at i:30201404 original size:26 final size:26
Alignment explanation
Indices: 30201366--30201418 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30201356 CCGGTCTGAT
30201366 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
30201392 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
30201418 C
1 C
30201419 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30201763 original size:159 final size:158
Alignment explanation
Indices: 30201391--30201829 Score: 417
Period size: 159 Copynumber: 2.8 Consensus size: 158
30201381 AACTCCATAT
* *
30201391 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * ** * *
30201455 CTGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCCGGTCCCCC-CTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAAAATGCGCAAGC-GGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
*** * * * *
30201519 CTGCTGTCGCAACCCTTAGTCCGGTCTGA
130 CCAATGCCACAACCCTCAGTCCGGACTGA
* ** * * * * *
30201548 TCTTAGAC-TAGGAATGAACTCCGTATGCAAAAGTCAAA-CCATGAAACGAGCATGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAAACCCACGAAATGAGCGTGCGGGCGCTC
* *
30201611 AGCCGACCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCC-A
64 AGCCGACCGGAGAGGCAAAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGA
* *
30201675 GTCCCAATGCCACAACCCTCGGTCC-GACTGGG
128 -TCCCAATGCCACAACCCTCAGTCCGGACT-GA
* * *
30201707 GCTTAGACATCGAATGAACTCCCTATGCCTAAGCAAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * * *
30201772 CCGGTCAGAGAGGCAAAATGCACAAGCCGGGGATTGGCCTGG--CCCCTCCTGCGTGCTG
66 CCGACCGGAGAGGCAAAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCT-CTGCGTGCTG
30201830 TTGATCTTGC
Statistics
Matches: 225, Mismatches: 47, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 53 0.24
158 61 0.27
159 109 0.48
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCC
CAATGCCACAACCCTCAGTCCGGACTGA
Found at i:30203451 original size:26 final size:26
Alignment explanation
Indices: 30203422--30203474 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30203412 CCAGTCCGAT
*
30203422 CTTAGACT-GGGACTAAACTCCGTATG
1 CTTAGACTAGGGA-TAAACTCCATATG
*
30203448 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATAAACTCCATATG
30203474 C
1 C
30203475 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCATATG
Found at i:30203697 original size:26 final size:26
Alignment explanation
Indices: 30203659--30203711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30203649 TCGATCTGAT
30203659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30203685 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30203711 C
1 C
30203712 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30205317 original size:869 final size:851
Alignment explanation
Indices: 30203650--30205742 Score: 2585
Period size: 869 Copynumber: 2.4 Consensus size: 851
30203640 ACCCTTGGTT
* * *
30203650 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGGACTCCGTATGCCTA
1 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTA
* * * * *
30203715 AGCTAACCCATGAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGTAGAATGCAAAAGCTGGG
66 AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCAGCCGGAGAGGTAGAATGCACAAGCTGGG
* * * * * *
30203780 GACCGACTCGA-TCCCCC-TGCATGCTGTCGATCCTACTGCCGCAACCCTCGTTCCGGTCTGATC
131 GATCG-GTCCAGTCCCCCTTGCATGCTGTCGATCCTGCT-CCGCAACCCTCGATCCGGTCCGATC
* * *
30203843 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTTAGGCACTGAGCC
194 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGCTGAGCC
* *
30203908 GGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGTCCGATCCCCCTCTACGTGCTGTCGATCCC
259 GGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTGCGTGCTGTCGATCCC
* * *
30203973 GCTACCACAACTCTCAATCCGGCTAGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
324 GCTACCACAACTCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
30204038 CCATGAAACAGGCATGCGGAGATGCAAAATGCCCAAGTCGGGGATTGGCCTGGTCACCCCTGCGT
389 CCACGAAACAGGCATGCGGAGAGGCAAAATGCCCAAGCCGGGGATTGGCCTGGTCACCCCTGCGT
* * *
30204103 GCTGTCAATTCTACTACCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCTGTAT
454 GCTGTCAATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATAAACTCTGTAT
* *
30204168 GCTTAGACTGAGGATGACCTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCAGGCGCTCAG
519 GCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCAGGCGCTCAG
** * * * ** * * * * *
30204233 TTGACCGGAGAGGCATAATGCGTAATCTGGGGATCAGCCTGATCCCTCTCTTCTTACTGTCGATC
584 CCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAACCCGATCCCTCTCTACGTACTGTCAATC
* * *
30204298 CTGCTGTCGGTCCTGCTGCCATAACCCTCAGTCCGACTGCGGCTTAGACATGGAATGAACTCCAT
649 CTGCTGCCGGTCCTGCTGCCACAACCCTCAGTCAGACTGCGGCTTAGACATGGAATGAACTCCAT
* * * ** * *
30204363 ATTCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAGCCTACCGGAGAGGCAAAGTGCACA
714 ATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCGCAGCCGACCGGAGAGGCAAAATGCACA
** ** * *
30204428 AGCTGGGGATCGGCCCGGTCCCCCCCGGTGTGCTACCTATGC-TACTGCGGGTCCTGTTACCGCA
779 AGCCAGGGATCGGCCCGGT-CCCCCCGGCATGCTACCGAT-CTTACTGCGGGTCCTGCTACCGCA
30204492 A-CTCTC-GATC
842 ACCT-TCAG-TC
* *
30204502 CGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCTGTATGCCTA
1 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTA
* * * * *
30204567 AGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGTTGGA
66 AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCAGCCGGAGAGGTAGAATGCACAAGCTGGG
* * * * **
30204632 GATCGGTCCAGTCCCCCTTACGTGCTATTGATCCTGCTACCGCAACCCTTAATCCGGTCCGATCT
131 GATCGGTCCAGTCCCCCTTGCATGCTGTCGATCCTGCT-CCGCAACCCTCGATCCGGTCCGATCT
* * * *
30204697 TAGA-TAGGGAATGAACTCCATATGCCTAAGTTAACCCACGGAATGAGCATTCAGGCGCTGAGCC
195 TAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGCTGAGCC
* * * * *
30204761 GGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGG-CTCAATCCCCCTCTGTGTGCTG-CCAGTC
259 GGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGTC-CGATCCCCCTCTGCGTGCTGTCGA-TC
* * *
30204824 CCACTGCCACAACTCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
322 CCGCTACCACAACTCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
*
30204889 ACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCTGGAGAGGCAGAATGCCCAAGCCGGGGATTG
387 ACCCACGAAAC-A--------G-G--CA-T--GC-GGAGAGGCAAAATGCCCAAGCCGGGGATTG
* * * *
30204954 GCCTGGTCACCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCC-AGTCTGATCTTAGA
436 GCCTGGTCACCCCTGCGTGCTGTCAATCCTACTACCGCAACCCTCGATCCGA-TCCGATCTTAGA
* *
30205018 CTGGGAATGAACTCTGTATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAAGCCACGAAA
500 CTGGGAATAAACTCTGTATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* ** * * *
30205083 TGAGCGTGTGGGTGCTCTGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCAACCCGATTCC
565 AGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAACCCGA-TCC
* * *
30205148 C-CTCTACGTGCTGTCAATCCTGTTGCCGGTCTTGCTGCCACAACCCTC-GATCTAG-CTAG-GG
629 CTCTCTACGTACTGTCAATCCTGCTGCCGGTCCTGCTGCCACAACCCTCAG-TC-AGACT-GCGG
* * * *
30205209 CTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCGCAGT
691 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCGCAGC
* * * * * **
30205274 CGGCCGGAGAGGTAAAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCATGCTGTCGATCTT
756 CGACCGGAGAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCGGCATGCTACCGATCTT
* * *
30205339 GCTGCTGGTCCTGCTACTGCAACCTTCAGTC
821 ACTGCGGGTCCTGCTACCGCAACCTTCAGTC
* *
30205370 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATTCCTA
1 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTA
** * * * *
30205435 AGCCAACCCACAAAACAAGCGTGCGTGTGCTCAG-CAGGCCGAAGAGGTAGAATGCACAAGCTGG
66 AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCA-GCCGGAGAGGTAGAATGCACAAGCTGG
* * * * *
30205499 GGGTCGGTTCGGTCCCCCTCTGCATGCTGTCGATCCTGCTCCGCAACCCTCGGTCCGGTCCAATC
130 GGATCGGTCCAGTCCCCCT-TGCATGCTGTCGATCCTGCTCCGCAACCCTCGATCCGGTCCGATC
* * * *
30205564 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCAGAGCC
194 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGCTGAGCC
* *
30205629 GACCGGAGAGGCATAATGCGTAAGCCAGGGATCGGTCCGATCCCCCTCTGCGTGCTGTCGATCCC
259 GGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTGCGTGCTGTCGATCCC
* *
30205694 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCC
324 GCTACCACAACTCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCC
30205743 TAATGCTTAG
Statistics
Matches: 1047, Mismatches: 160, Indels: 52
0.83 0.13 0.04
Matches are distributed among these distances:
851 3 0.00
852 129 0.12
853 212 0.20
854 1 0.00
862 1 0.00
863 1 0.00
865 2 0.00
866 1 0.00
867 3 0.00
868 341 0.33
869 347 0.33
870 6 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (851 bp):
CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTA
AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCAGCCGGAGAGGTAGAATGCACAAGCTGGG
GATCGGTCCAGTCCCCCTTGCATGCTGTCGATCCTGCTCCGCAACCCTCGATCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGCTGAGCCGG
CCGGAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTGCGTGCTGTCGATCCCGC
TACCACAACTCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACAGGCATGCGGAGAGGCAAAATGCCCAAGCCGGGGATTGGCCTGGTCACCCCTGCGTGC
TGTCAATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATAAACTCTGTATGC
TTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCAGGCGCTCAGCC
GACCAGAGAGGCATAATGCGCAAGCCAGGGATCAACCCGATCCCTCTCTACGTACTGTCAATCCT
GCTGCCGGTCCTGCTGCCACAACCCTCAGTCAGACTGCGGCTTAGACATGGAATGAACTCCATAT
GCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCGCAGCCGACCGGAGAGGCAAAATGCACAAG
CCAGGGATCGGCCCGGTCCCCCCGGCATGCTACCGATCTTACTGCGGGTCCTGCTACCGCAACCT
TCAGTC
Found at i:30205408 original size:26 final size:26
Alignment explanation
Indices: 30205379--30205429 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30205369 CTGATCCGAT
30205379 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
30205405 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
30205430 TCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30207096 original size:159 final size:159
Alignment explanation
Indices: 30206898--30207203 Score: 359
Period size: 159 Copynumber: 1.9 Consensus size: 159
30206888 TGCGTGCTGT
* * * * * *
30206898 CGATCTTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGAC-TGGGAATGAACTCCGTATGCAT
1 CGATCCTGCTACCACAACCCTCGATCCGAACTGAGCTTAGACAT-GGAATGAACTCCCTATGCAT
* * * * * *
30206962 AAGTCAACTCACAAAATGAGCGTACGGGCGCTGAACCGACC-GAAGAGGCATAATACGCAAGTCG
65 AAGCCAACCCACAAAATGAGCGTACGGGCACTCAACCGACCAG-AGAGGCAAAATACGCAAGTAG
30207026 GGGATC-AGCCTGATCCCCATCTACGTGTCAC
129 GGGATCGAGCC-GATCCCCATCTACGTGTCAC
* *
30207057 CGATCCTGCTACCACAACCCTCGATCC-AACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 CGATCCTGCTACCACAACCCTCGATCCGAACT-GAGCTTAGACATGGAATGAACTCCCTATGCAT
* * * * * *
30207121 AAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGCCGATCAGAGAGGCAAAATGCGCAAGTAGG
65 AAGCCAACCCACAAAATGAGCGTACGGGCACTCAACCGACCAGAGAGGCAAAATACGCAAGTAGG
*
30207186 GGATCGGGCCGATCCCCA
130 GGATCGAGCCGATCCCCA
30207204 CCGCGTGCTG
Statistics
Matches: 122, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
158 3 0.02
159 114 0.93
160 5 0.04
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (159 bp):
CGATCCTGCTACCACAACCCTCGATCCGAACTGAGCTTAGACATGGAATGAACTCCCTATGCATA
AGCCAACCCACAAAATGAGCGTACGGGCACTCAACCGACCAGAGAGGCAAAATACGCAAGTAGGG
GATCGAGCCGATCCCCATCTACGTGTCAC
Found at i:30207291 original size:26 final size:26
Alignment explanation
Indices: 30207250--30207302 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30207240 TCGGTCTGAT
30207250 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30207276 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
30207302 C
1 C
30207303 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30207560 original size:171 final size:172
Alignment explanation
Indices: 30207346--30207655 Score: 417
Period size: 171 Copynumber: 1.8 Consensus size: 172
30207336 TCAGCCAGCC
* ** **
30207346 GGAGAGGCATAATGTGCAAGCCGGGGATCAGCTTGGTCCCCCTCTGCGTGCTGTCGATCACGCTA
1 GGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCACGCTA
** * * * * *
30207411 TTGGTCCTGCTACCACAGCCCTC-GATTCGGCTGGGGCTTAGACATGGAATAAACTCCCTATGCC
66 CCGATCCTACTACCACAACCCTCTG-TCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCC
30207475 TAAG-CAACCCACAAAACGGGCTTACGGGTGCTCAGTCCGACT
130 TAAGCCAACCCACAAAACGGGCTTACGGGTGCTCAGTCCGACT
* * *
30207517 GGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGATCTCGCTG
1 GGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCACGCTA
* * * * *
30207582 CCGATCTTACTACCATAACCTTCTGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
66 CCGATCCTACTACCACAACCCTCTGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCT
30207647 AAGCCAACC
131 AAGCCAACC
30207656 TGCGAAATGA
Statistics
Matches: 117, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
171 111 0.95
172 6 0.05
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (172 bp):
GGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCACGCTA
CCGATCCTACTACCACAACCCTCTGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCT
AAGCCAACCCACAAAACGGGCTTACGGGTGCTCAGTCCGACT
Found at i:30207694 original size:171 final size:169
Alignment explanation
Indices: 30207334--30207694 Score: 395
Period size: 171 Copynumber: 2.1 Consensus size: 169
30207324 TCGAGCGGGC
* * ** **
30207334 GCTCAGCCAGCCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTTGGTCCCCCTCTGCGTGCTG
1 GCTCAGCCAGACGGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTGCGTGCTG
** * * * * *
30207399 TCGATCACGCTATTGGTCCTGCTACCACAGCCCTCGATTCGGCTGGGGCTTAGACATGGAATAAA
66 TCGATCACGCTACCGATCCTACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATAAA
*
30207464 CTCCCTATGCCTAAGCAACCCACAAAACGGGCTTACGGGT
131 CTCCCTATGCCTAAGCAACCCACAAAACGAGCTTAC-GGT
*
30207504 GCTCAGTCC-GACTGGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTGTGTGC
1 GCTCAG-CCAGAC-GGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTGCGTGC
* * * * *
30207568 TGTCGATCTCGCTGCCGATCTTACTACCATAACCTTCTG-TCCGACTGGGGCTTAGACATGGAAT
64 TGTCGATCACGCTACCGATCCTACTACCACAACCCTC-GATCCGACTGGGGCTTAGACATGGAAT
* * ** * *
30207632 GAACTCCGTATGCCTAAGCCAACCTGCGAAATGAGCGTGTA-GGT
128 AAACTCCCTATGCCTAAG-CAACCCACAAAACGAGC-T-TACGGT
*
30207676 GCTCAGCCAGTCGGAGAGG
1 GCTCAGCCAGACGGAGAGG
30207695 TAGAATAAAT
Statistics
Matches: 157, Mismatches: 27, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
170 8 0.05
171 122 0.78
172 24 0.15
173 1 0.01
174 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (169 bp):
GCTCAGCCAGACGGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTGCGTGCTG
TCGATCACGCTACCGATCCTACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATAAA
CTCCCTATGCCTAAGCAACCCACAAAACGAGCTTACGGT
Found at i:30209562 original size:26 final size:26
Alignment explanation
Indices: 30209524--30209576 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30209514 CCATTTGAAT
*
30209524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
30209550 CTTAGACAT-GGAATGAAATCTGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
30209576 C
1 C
30209577 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:30209661 original size:354 final size:354
Alignment explanation
Indices: 30208854--30209640 Score: 872
Period size: 354 Copynumber: 2.3 Consensus size: 354
30208844 CTGGTCTGAT
* * * * * ** * *
30208854 CTTACACTGGGAATGAACTCCATATGCATAAGTTAACCCACGAAACGACCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAAATTCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * * * * *
30208919 CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCATGC--T-G--CC
66 CTGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCC
* * * *
30208979 GA-T--C--T-C-GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCTTA
131 CACTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCTTA
* * * * * ** * *
30209037 TGCCTAATCCAACCCACAAAATGGGCGTGTGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAA
196 TGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAACCGACCAGAAAAGCAGAATGCGCAA
* ** * * **
30209102 GCCGAGGATTGGCCCGGTCCCCTTTGCGTGCTACTGATCCTGCTGCCACAAACCTCGATTCGGTT
261 GCCGAGGATCGGCCCGGTCCCCCCTACGTGCTACTGATCCTGCTGCCACAAACCTCGAGTCCATT
*
30209167 CGATCTAGACTGGGAATGAACTCTGTATG
326 CGATCTAGACTGGGAATGAACTCCGTATG
* * * * ** *
30209196 CTTAGACTAGGGATGAACTTCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTTAGC
1 CTTAGACTAGGAATGAAATTCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * *
30209261 CTGCTGGAGAGGCATAATGCGTAAGCCAAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCC
66 CTGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCC
30209326 CACTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCC-TA
131 CACTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCTTA
* * *
30209390 TGCCTAAGCCAACCCACGAAATGAGCGTGCGAGTGCTCAACCGGCCAGAAAAGCAGAATGCGCAA
196 TGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAACCGACCAGAAAAGCAGAATGCGCAA
* * * * *
30209455 GTCGGGGATCGGCCTGGTCCCCCCTACGTGCT-GTCGATCCTGCTGCCACAACCCTCG-GTCCAT
261 GCCGAGGATCGGCCCGGTCCCCCCTACGTGCTACT-GATCCTGCTGCCACAAACCTCGAGTCCAT
*
30209518 TTGAATCTTAGACTGGGAATGAACTCCGTATG
325 TCG-ATC-TAGACTGGGAATGAACTCCGTATG
*
30209550 CTTAGAC-ATGGAATGAAA-TCTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
1 CTTAGACTA-GGAATGAAATTC-ATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
*
30209613 G-TTGGCCGGAGAGGCAGAATGCGCAAGC
64 GCCT-GCCGGAGAGGCAGAATGCGCAAGC
30209641 TGGGGATCGA
Statistics
Matches: 367, Mismatches: 60, Indels: 24
0.81 0.13 0.05
Matches are distributed among these distances:
342 103 0.28
344 1 0.00
345 1 0.00
347 3 0.01
348 1 0.00
350 1 0.00
352 7 0.02
353 109 0.30
354 141 0.38
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (354 bp):
CTTAGACTAGGAATGAAATTCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
CTGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCC
CACTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCTTA
TGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAACCGACCAGAAAAGCAGAATGCGCAA
GCCGAGGATCGGCCCGGTCCCCCCTACGTGCTACTGATCCTGCTGCCACAAACCTCGAGTCCATT
CGATCTAGACTGGGAATGAACTCCGTATG
Found at i:30210061 original size:26 final size:26
Alignment explanation
Indices: 30210022--30210072 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30210012 GGTCCGATCA
*
30210022 TAGACTGGGAATGAGCTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
30210048 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
30210073 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:30210504 original size:26 final size:26
Alignment explanation
Indices: 30210466--30210518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30210456 GGCTCAAAAT
30210466 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
30210492 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
30210518 C
1 C
30210519 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:30210888 original size:159 final size:157
Alignment explanation
Indices: 30210491--30210930 Score: 417
Period size: 159 Copynumber: 2.8 Consensus size: 157
30210481 AACACCGTAT
* *
30210491 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACA-AGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-AGAGCATGCGGGCGCTCA
* * * * * * *
30210555 GGCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCTCCC-CTTCGTGCTGTCGA
65 -ACGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGC-CGGTCC-CCCTCTACGTGCTGCCGA
**
30210619 TCCTACAGCTGCAACCCTCGGTCTGGTCTGA
127 TCCTACAGCCACAACCCTCGGTCTGGTCTGA
* ** * *
30210650 TCTTAGAC-TGGGAATGAACTCCGTATGCAAAAGTCAACCCATGAAATGAGCATGCGGGCGCT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCA
* * * * * * *
30210713 AGCCGACCGAAAAGGTATAATGCGCAAGCTGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGC
65 A--CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCC-GGTCCCCCTCTACGTGCTGCCGA
* * *
30210778 TACC-ACTGCCACAACCCTTGGTCTGG-CTGGG
127 T-CCTACAGCCACAACCCTCGGTCTGGTCT-GA
* ** * *
30210809 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATGCATGAAAAGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAA
* * *
30210874 CTGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATAGGCCCGAT-CCCCTCTACGTGCT
66 C-GGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGG-CCGGTCCCCCTCTACGTGCT
30210931 ATCGATCTTG
Statistics
Matches: 225, Mismatches: 44, Indels: 25
0.77 0.15 0.09
Matches are distributed among these distances:
158 22 0.10
159 196 0.87
160 7 0.03
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAA
CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCGGTCCCCCTCTACGTGCTGCCGATCCT
ACAGCCACAACCCTCGGTCTGGTCTGA
Found at i:30211377 original size:26 final size:26
Alignment explanation
Indices: 30211348--30211400 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30211338 CCAATCCGAT
30211348 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
30211374 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30211400 C
1 C
30211401 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30211878 original size:26 final size:26
Alignment explanation
Indices: 30211849--30211901 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30211839 CCGGTCCAAT
30211849 CTTAGACTGG-GAATGAACTCCATATG
1 CTTAGACTGGCG-ATGAACTCCATATG
*
30211875 CTTAGACTGGCGATGAACTCCGTATG
1 CTTAGACTGGCGATGAACTCCATATG
30211901 C
1 C
30211902 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCGATGAACTCCATATG
Found at i:30212169 original size:882 final size:881
Alignment explanation
Indices: 30210464--30212193 Score: 2250
Period size: 881 Copynumber: 2.0 Consensus size: 881
30210454 GTGGCTCAAA
*
30210464 ATCTTAGACTGGGAATGAACACCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAAC
1 ATCTTAGACTGGGAATGAACACCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * ** *
30210529 CCATGAAACAAGCGTGCGGGCGCTCAGGCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGC
66 CCACAAAACAAGCATGCAGGCGCTCAACCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGAC
* *
30210594 TCGGTCCTCCCCTTCGTGCTGTCGATCCTACAGCTGCAACCCTCGGTCTGGTCTGATCTTAGACT
131 CCGGTCCTCCCCTTCGTGCTATCGATCCTACAGCTGCAACCCTCGGTCTGGTCTGATCTTAGACT
* * *
30210659 GGGAATGAACTCCGTATGCAAAAGTCAACCCATGAAATGAGCATGCGGGCGCTAAGCCGACCGAA
196 GAGAATGAACTCCGTATGCAAAAGTCAACCCACGAAATGAGCATGCAGGCGCTAAGCCGACCGAA
* * * * * *
30210724 AAGGTATAATGCGCAAGCTGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGCCGCTACCACTGCCA
261 AAGGCATAATACGCAAGCTGAGGATCGACCAGATCCCCCTCTGCGTGCTGCCGCTACCACTACCA
* * * * *
30210789 CAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATGCATGAA
326 CAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAATGCACGAA
* * * * * *
30210854 AAGGGCATGCGGGTGCTCAACTGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATAGGCCCGATCC
391 AAGGGCATGCGGGTGCTCAACTGACCGGAAAGGTAGAATACGGAAGCCGAGGATAGACCCGATCC
* * * * * * * **
30210919 CCTCTACGTGCTATCGATCTTGCTGTCGTAACCCTCGGTTTGGCTCAATCTTAGACTAGGAATGA
456 CCCCTACGTGCTACCGATCCTACTATCGCAACCCTCGATCCGGCTCAATCTTAGACTAGGAATGA
* * * *
30210984 ACTCTATATGCTTAGAATGGGGATGAACTCTGTATGCCTAAGTCACCCACGAAACGAGATTGCGG
521 ACTCCATATGCTTAGAATGGCGATGAACTCCGTATGCCTAAGTCACCCACGAAACGAGAGTGCGG
* * * *
30211049 GCGGTCAGTTGGCTAGAGAGGCCGATCGAAGAGGCATAATACGCAAGCCAGGGATCAGCTCGGTC
586 GCGCTCAGTCGGCTAGAGAGGCCGATCGAAGAGGCATAATACGCAAGCCAGGGATCAGCCCGATC
* * * * *
30211114 CCCCTTTGCGTGCTGCCGATCACACTGCCGGTACTGCAGTCACAACCCTTGGTCCGACTGGGGCT
651 CCCCTCTGCGTGCTGCCAATCACACTGCCAGTACTGCAGCCACAACCCTCGGTCCGACTGGGGCT
* * * * *
30211179 TAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGTCG
716 TAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCA
* * * * *
30211244 GCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCCTGTGTGCTACCGATCCTA
781 GCCGAAGAGGCAGAATGCACAAACCGAGGATCGACCCGGT-CCCCCCTGGGTGCTACCGATCCTA
30211309 CTACTGGTCCTGCTACCACAACCCTCAGTCCAATCCG
845 CTACTGGTCCTGCTACCACAACCCTCAGTCCAATCCG
* *
30211346 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACACCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * **
30211411 CCACAAAACGAGCATGCAGGCGCTCAACCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGAC
66 CCACAAAACAAGCATGCAGGCGCTCAACCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGAC
* * * * *
30211476 CCGGT-C-CCCCTTACGTGCTATCGATCCTGCTGTTGCAACCTTCGGTTTGGTCTGATCTTAGAC
131 CCGGTCCTCCCCTT-CGTGCTATCGATCCTACAGCTGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * *
30211539 TGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAGCCGACCGA
195 TGAGAATGAACTCCGTATGCAAAAGTCAACCCACGAAATGAGCATGCAGGCGCTAAGCCGACCGA
* * * * * *
30211604 AGAGGCATAATACGCAAG-TCGAGGATCGACCTGATCCCCCTCTGCTTGCTGCCGGTCCCGCTAC
260 AAAGGCATAATACGCAAGCT-GAGGATCGACCAGATCCCCCTCTGCGTGCTGCCGCTACCACTAC
* *
30211668 CATAACTCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAA-GCCAC
324 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAATG-CAC
* * * * * *
30211732 GAAATGGGCGTGCGGGTGCTC-AGTCGATCGGAAAGGTAGAATACGGAAGTCGAGGATCGACCCG
388 GAAAAGGGCATGCGGGTGCTCAACT-GACCGGAAAGGTAGAATACGGAAGCCGAGGATAGACCCG
* * * * *
30211796 GTCCCCCCTACGTGCTCCCGATCCTACTATCGCAACTCTCTATCCGG-TCCAATCTTAGACTGGG
452 ATCCCCCCTACGTGCTACCGATCCTACTATCGCAACCCTCGATCCGGCT-CAATCTTAGACTAGG
* *
30211860 AATGAACTCCATATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
516 AATGAACTCCATATGCTTAGAATGGCGATGAACTCCGTATGCCTAAGTC-ACCCACGAAACGAGA
** * * * * *
30211925 GTGCGGGTTCTCAGTCGG-TCGGAGAGGCCGATCGAAGAGGCATAATGCGCAAGTCGGGGATTAG
580 GTGCGGGCGCTCAGTCGGCT-AGAGAGGCCGATCGAAGAGGCATAATACGCAAGCCAGGGATCAG
* * * * *
30211989 CCCGATCCCCCTCTGCGTGCTGCCAATCCCACTGCCAGTCCTGCTGCCACAACCCTCGGTTCGGC
644 CCCGATCCCCCTCTGCGTGCTGCCAATCACACTGCCAGTACTGCAGCCACAACCCTCGGTCCGAC
* *
30212054 TGGGGCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
709 TGGGGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
* * * ** * **
30212119 TCAGCCAGTCGAAGAGGTAGAATGCACAAACCGATGATCGGTCGGGTCCCCCCTGGGTGCTGTCG
774 TCAGCCAGCCGAAGAGGCAGAATGCACAAACCGAGGATCGACCCGGTCCCCCCTGGGTGCTACCG
*
30212184 ATCCTGCTAC
839 ATCCTACTAC
30212194 CGCAACCCTC
Statistics
Matches: 720, Mismatches: 121, Indels: 15
0.84 0.14 0.02
Matches are distributed among these distances:
880 11 0.02
881 376 0.52
882 333 0.46
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (881 bp):
ATCTTAGACTGGGAATGAACACCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAACAAGCATGCAGGCGCTCAACCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGAC
CCGGTCCTCCCCTTCGTGCTATCGATCCTACAGCTGCAACCCTCGGTCTGGTCTGATCTTAGACT
GAGAATGAACTCCGTATGCAAAAGTCAACCCACGAAATGAGCATGCAGGCGCTAAGCCGACCGAA
AAGGCATAATACGCAAGCTGAGGATCGACCAGATCCCCCTCTGCGTGCTGCCGCTACCACTACCA
CAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAATGCACGAA
AAGGGCATGCGGGTGCTCAACTGACCGGAAAGGTAGAATACGGAAGCCGAGGATAGACCCGATCC
CCCCTACGTGCTACCGATCCTACTATCGCAACCCTCGATCCGGCTCAATCTTAGACTAGGAATGA
ACTCCATATGCTTAGAATGGCGATGAACTCCGTATGCCTAAGTCACCCACGAAACGAGAGTGCGG
GCGCTCAGTCGGCTAGAGAGGCCGATCGAAGAGGCATAATACGCAAGCCAGGGATCAGCCCGATC
CCCCTCTGCGTGCTGCCAATCACACTGCCAGTACTGCAGCCACAACCCTCGGTCCGACTGGGGCT
TAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCA
GCCGAAGAGGCAGAATGCACAAACCGAGGATCGACCCGGTCCCCCCTGGGTGCTACCGATCCTAC
TACTGGTCCTGCTACCACAACCCTCAGTCCAATCCG
Found at i:30212394 original size:159 final size:160
Alignment explanation
Indices: 30212031--30212776 Score: 606
Period size: 159 Copynumber: 4.7 Consensus size: 160
30212021 TGCCAGTCCT
* * *
30212031 GCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
30212096 CCACGAAA-CGAGCGTGCGGGCACTCAGCC-AGTCGAAGAGGTAGAATGC-ACAAACCGATGATC
66 CCATGAAATCGAGCGTGCGGGCACTCAGCCGA-CCGGAGAGGCAGAATGCGA-AAACCGAGGATC
** * * ** * *
30212158 GGTCGGGTC-CCCCCTGGGTGCTGTCGATCCT
129 GACCCGGTCTCCCTCTACGTGCTATCGATCCC
* * ** * * *
30212189 GCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGA-TTGGGAATGAACTCGGTATGCCTAAGTCA
1 GCTGCCACAACCCTCGGTCCGG-CTAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * * ** *
30212252 ACCCATGAAATC-AGCGTGCGGGCACTAAGCCGACCGGAGAGGCATAATACGAAAATTGGGGATC
64 ACCCATGAAATCGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGAAAACCGAGGATC
* * *
30212316 GACCCGATCTCCCTCTACGTGCTGTCGGTCCC
129 GACCCGGTCTCCCTCTACGTGCTATCGATCCC
*
30212348 ACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** ** * * *
30212413 CCATGAAAT-GAACGTGCGGGCCCTCAGCCGGTCGGAGAGAAAGAATGCGCAAGCCGGGGATC-A
66 CCATGAAATCGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGAAAACCGAGGATCGA
* ** *
30212476 GCCCGGTCCCCCT-TGTGTGCTATCGATCCT
131 -CCCGGTCTCCCTCTACGTGCTATCGATCCC
* * * * ** * *
30212506 GCTGCCACAACCTTCGGT-CTGATCCGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCA
1 GCTGCCACAACCCTCGGTCCGGCT-AGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * *** ** * * * * * *
30212569 ACCCACGAAA-CGAGTGTATAGGCGTTGAGCCAACCAGAGAGGCATAATGCGCAAGCCGAGGATC
64 ACCCATGAAATCGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGAAAACCGAGGATC
* *
30212633 GGCCCGG--TCCCTCGTTACGTGCTATCGGTCCC
129 GACCCGGTCTCCCTC--TACGTGCTATCGATCCC
* *
30212665 GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
30212730 CCATGAAAT-GGGCGTGCAGGCGCTCAGCTGACTGGAGAGGTAGAATG
66 CCATGAAATCGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATG
30212777 TGTAAGTCGG
Statistics
Matches: 456, Mismatches: 112, Indels: 39
0.75 0.18 0.06
Matches are distributed among these distances:
156 4 0.01
157 5 0.01
158 215 0.47
159 228 0.50
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (160 bp):
GCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAATCGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGAAAACCGAGGATCGA
CCCGGTCTCCCTCTACGTGCTATCGATCCC
Found at i:30212547 original size:317 final size:315
Alignment explanation
Indices: 30212032--30212870 Score: 1009
Period size: 317 Copynumber: 2.6 Consensus size: 315
30212022 GCCAGTCCTG
* * *
30212032 CTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * ** *
30212097 CACGAAACGAGCGTGCGGGCACTCAGCCAGTCGAAGAGGTAGAATGCACAAACCGATGATCGGTC
66 CATGAAATGAGCGTGCGGGCACTCAGCCAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATC-GCC
* * * * *
30212162 GGGTCCCCCCTGGGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATTGG
130 CGGTCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * * * *
30212227 GAATGAACTCGGTATGCCTAAGTCAACCCATGAAATC-AGCGTGCGGGCACTAAGCCGACCGGAG
195 GAATGAACTCGGTATGCCTAAGTCAACCCACGAAA-CGAGCGTACAGGCACTAAGCCAACCAGAG
** * *
30212291 AGGCATAATACGAAAATTGGGGATCGACCCGATCTCCCTC-TACGTGCTGTCGGTCCCA
259 AGGCATAATACGAAAACCGAGGATCGACCCG--CTCCCTCGTACGTGCTATCGGTCCCA
30212349 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * **
30212414 CATGAAATGAACGTGCGGGCCCTCAGCCGGTCGGAGAGAAAGAATGCGCAAGCCGGGGATCAGCC
66 CATGAAATGAGCGTGCGGGCACTCAGCCAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATC-GCC
* * * * * *
30212479 CGGTCCCCCTTGTGTGCTATCGATCCTGCTGCCACAACCTTCGGTCTGATCCGATCTTAGACTGG
130 CGGTCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * * ** *
30212544 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTATAGGCGTTGAGCCAACCAGAGA
195 GAATGAACTCGGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTAAGCCAACCAGAGA
* * * * * *
30212609 GGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCTCGTTACGTGCTATCGGTCCCG
260 GGCATAATACGAAAACCGAGGATCGACCCGCTCCCTCG-TACGTGCTATCGGTCCCA
* *
30212666 CTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
30212731 CATGAAATGGGCGTGCAGGCGCTCAG-CTGACTGGAGAGGTAGAATGTGTAAGTCGGGGATCGTC
66 CATGAAATGAGCGTGCGGGCACTCAGCCAGTC-GGAGAGGTAGAATGCGCAAGCCGGGGATCG-C
** * * * *
30212795 CCAATCCCCCCTGTGTGCTACCGATCCTGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTA
129 CCGGTCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
30212860 GGAATGAACTC
194 GGAATGAACTC
30212871 CGTCTACTTA
Statistics
Matches: 443, Mismatches: 74, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
315 6 0.01
316 5 0.01
317 432 0.98
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (315 bp):
CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAATGAGCGTGCGGGCACTCAGCCAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGCCC
GGTCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
AATGAACTCGGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTAAGCCAACCAGAGAG
GCATAATACGAAAACCGAGGATCGACCCGCTCCCTCGTACGTGCTATCGGTCCCA
Found at i:30212791 original size:159 final size:158
Alignment explanation
Indices: 30212026--30212873 Score: 659
Period size: 158 Copynumber: 5.4 Consensus size: 158
30212016 CCCACTGCCA
* * * *
30212026 GTCCTGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTTTGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * * * **
30212091 CCAACCCACGAAACGAGCGTGCGGGCACTCAGCC-AGTCGAAGAGGTAGAATGCACAAACCGATG
66 CCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACT-GGAGAGGCAGAATGCGCAAGCCGGGG
* * * ** *
30212155 ATCGGTCGGGTCCCCCCTGGGTGCTGTCG
130 ATCGGCCCGGTCCCCCTTACGTGCTATCG
* * * * ** * *
30212184 ATCCTGCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGA-TTGGGAATGAACTCGGTATGCCTA
1 GTCCTGCTGCCACAACCCTCGGTCC-GACTAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTA
* * * * * * * ***
30212247 AGTCAACCCATGAAATCAGCGTGCGGGCACTAAGCCGACCGGAGAGGCATAATACGAAAATTGGG
64 AGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGG
* * * *
30212312 GATCGACCCGATCTCCCTCTACGTGCTGTCG
129 GATCGGCCCGGTCCCCCT-TACGTGCTATCG
** *
30212343 GTCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * **
30212408 CCAACCCATGAAATGAACGTGCGGGCCCTCAGCCG-GTCGGAGAGAAAGAATGCGCAAGCCGGGG
66 CCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACT-GGAGAGGCAGAATGCGCAAGCCGGGG
* **
30212472 ATCAGCCCGGTCCCCCTTGTGTGCTATCG
130 ATCGGCCCGGTCCCCCTTACGTGCTATCG
* * * * ** *
30212501 ATCCTGCTGCCACAACCTTCGGTCTGA-TCCGATCTTAGAC-TGGGAATGAACTCTGTATGCCTA
1 GTCCTGCTGCCACAACCCTCGGTCCGACT-AGGGCTTAGACAT-GGAATGAACTCCGTATGCCTA
* * * * *** ** * * ** * *
30212564 AGTCAACCCACGAAACGAGTGTATAGGCGTTGAGCCAACCAGAGAGGCATAATGCGCAAGCCGAG
64 AGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGG
*
30212629 GATCGGCCCGGTCCCTCGTTACGTGCTATCG
129 GATCGGCCCGGTCCC-CCTTACGTGCTATCG
* *
30212660 GTCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
30212725 CCAACCCATGAAATGGGCGTGCAGGCGCTCAGCTGACTGGAGAGGTAGAATGTGTAAGTCGGGGA
66 CCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGA
* ** * ** *
30212790 TCGTCCCAATCCCCCCTGTGTGCTACCG
131 TCGGCCCGGTCCCCCTTACGTGCTATCG
* * * * * **
30212818 ATCCTGCTGTCGCAACCCTCAGTCCGGTCT-GATCTTAGAC-TAGGAATGAACTCCGT
1 GTCCTGCTGCCACAACCCTCGGTCC-GACTAGGGCTTAGACAT-GGAATGAACTCCGT
30212874 CTACTTAGAC
Statistics
Matches: 530, Mismatches: 145, Indels: 30
0.75 0.21 0.04
Matches are distributed among these distances:
157 4 0.01
158 276 0.52
159 247 0.47
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGA
TCGGCCCGGTCCCCCTTACGTGCTATCG
Found at i:30212906 original size:26 final size:26
Alignment explanation
Indices: 30212851--30212929 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
30212841 CCGGTCTGAT
* * * *
30212851 CTTAGACTAGGAATGAACTCCGTCTA
1 CTTAGACTGGGGATGAACTCCGTATG
*
30212877 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
30212903 CTTAGA-TGGGGGATGAACTCCGTATG
1 CTTAGACT-GGGGATGAACTCCGTATG
30212929 C
1 C
30212930 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.02
26 45 0.98
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:30214484 original size:26 final size:26
Alignment explanation
Indices: 30214448--30214500 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30214438 CCGATTCGAT
* *
30214448 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30214474 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30214500 C
1 C
30214501 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30214584 original size:368 final size:363
Alignment explanation
Indices: 30213896--30214791 Score: 1075
Period size: 368 Copynumber: 2.4 Consensus size: 363
30213886 TATCGGTCCC
* * *
30213896 ACTGTCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
30213961 CCGAAACGGGCGTGCGGGCGCTCAGTCGGACGGAGAGGCAGAATGCCCAAGTCGAGGATCGGCCT
66 CCGAAACGAGCGTGCGGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAAGTCG-GGATCGACCC
* * * *
30214026 GATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGATCCGATCTAATCTTAGACTGCA
130 GATCCCCCCTGCATGCT-GCGATCCTGCTACCGCAACCCTCGATCCGATCTAATCTTAGACTGCA
30214091 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGC
194 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGC
** * * * * **
30214156 GTGTGGACGTTCAGCCAGTCGGAGAGGTCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAGC
259 GTACGGACGCTCAGCCAGCCGGAGAGGTCGGCCGGAGAGACATAATGCACAAGCCGGGGAT-AGC
* * * *
30214221 CCAGTCTCCCTCT-GCGTGCTGTCGATCCCGCTGTCAATCCT
323 CCAGTCACCCTCTAG-ATGCTGTCAATCCCGCTGCCAATCCT
* * * *
30214262 ACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCTGAATGCCTAAGCCTAC
1 ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* *
30214327 CCATGAAACGAGCGTGCGGGCACTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCTGGGATCGAC
66 CC--GAAACGAGCGTGCGGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAAGTC-GGGATCGAC
* * * * * *
30214392 CCGGTCCCCCCTGCATGCTGTCGATCCTGTTATCGTAACCCTC-AGTCCGAT-TCGATCTTAGAT
128 CCGATCCCCCCTGCATGCTG-CGATCCTGCTACCGCAACCCTCGA-TCCGATCT-AATCTTAGAC
** * *
30214455 TGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
190 TGCAAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAAC
* *
30214520 GAGCGTACGGACGCTCAGCC-GACCGGAGAGGTCGGCCGGAGAGACATAATGCACAGGTCGGGGA
255 GAGCGTACGGACGCTCAGCCAG-CCGGAGAGGTCGGCCGGAGAGACATAATGCACAAGCCGGGGA
* * * **
30214584 TAGCTCGGTCACCCTCTAGATGCTGTCAATCCCGTTGCCGGTCCT
319 TAGCCCAGTCACCCTCTAGATGCTGTCAATCCCGCTGCCAATCCT
** ** *
30214629 GTTGCCACAGTCCTCGGTCCGGCGGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
30214694 CCGCAAAAAGAACGTTCGGG-AGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATC-A
66 CCG--AAACGAGCGTGCGGGCA-CTCAGTCGGCCGGAGAGGCAGAATGCGCAAGTC-GGGATCGA
*
30214757 GCCCGATCCCTCCTGCATGCTGCTGATCCTGCTAC
127 -CCCGATCCCCCCTGCATGCTGC-GATCCTGCTAC
30214792 TGGTCCTACT
Statistics
Matches: 449, Mismatches: 68, Indels: 25
0.83 0.13 0.05
Matches are distributed among these distances:
365 1 0.00
366 63 0.14
367 170 0.38
368 214 0.48
369 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (363 bp):
ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCGAAACGAGCGTGCGGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAAGTCGGGATCGACCCG
ATCCCCCCTGCATGCTGCGATCCTGCTACCGCAACCCTCGATCCGATCTAATCTTAGACTGCAAA
TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGT
ACGGACGCTCAGCCAGCCGGAGAGGTCGGCCGGAGAGACATAATGCACAAGCCGGGGATAGCCCA
GTCACCCTCTAGATGCTGTCAATCCCGCTGCCAATCCT
Found at i:30214871 original size:26 final size:26
Alignment explanation
Indices: 30214842--30214894 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30214832 CCAATCCGAT
30214842 CTTAGAC-TGGAAATGAACTCCATATG
1 CTTAGACATGG-AATGAACTCCATATG
*
30214868 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
30214894 C
1 C
30214895 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30215166 original size:157 final size:158
Alignment explanation
Indices: 30214868--30215229 Score: 458
Period size: 157 Copynumber: 2.3 Consensus size: 158
30214858 ACTCCATATG
*
30214868 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAA
* * *** **
30214932 CCGATCGGAGAGGCAGAATGTGTAAGCGGGGGACCAACCCGATCCCCACTACGTGCTATCGATCC
65 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGACCAACCCGATCCCCACTACGTGCTATCGATCC
* * * * *
30214997 TGCTACCGCAACCTTCAGTGCGGTCCAAT
130 TACTACCACAACCCTCAGTCCGATCCAAT
* *
30215026 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGTGTGC-GGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAAC
* ** * * *
30215090 CGACCAGAGAGGTAGAATGCACAAGCCAGGGACTGACCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGACCAGAGAGGCAGAATGCACAAGCCAGGGACCAACCCGATCCCCACTACGTGCTATCGATCCT
* * **
30215155 ACTGCCACAACCCTCGGTCCGATCTGAT
131 ACTACCACAACCCTCAGTCCGATCCAAT
* *
30215183 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
30215230 TGCGTTCGAG
Statistics
Matches: 175, Mismatches: 28, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
157 125 0.71
158 50 0.29
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAAC
CGACCAGAGAGGCAGAATGCACAAGCCAGGGACCAACCCGATCCCCACTACGTGCTATCGATCCT
ACTACCACAACCCTCAGTCCGATCCAAT
Found at i:30215882 original size:196 final size:196
Alignment explanation
Indices: 30215365--30215888 Score: 590
Period size: 196 Copynumber: 2.7 Consensus size: 196
30215355 GTCCAGCTGG
* * *
30215365 GGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCAGGCGCTCA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * **
30215430 GTCGGGT-GGAGAGGCAGAATGCACAAGC-CAGGGATCAGCTCGGTCCCTACTGTATGTTACCGA
66 G-CCGGTCGGAGAGGCAGAATGCACAAGCTGA-GGATCAGCCCGGTCCCTCCTGCATGCTGTCGA
* * *
30215493 TCTTCCTGCTGGTCCTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAACTCC
129 TCCTCCTACTGGTCCTACTGTCGCAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAACTCC
30215558 ATA
194 ATA
* * * *
30215561 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCACTCA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
30215626 GCTGGCCGGAGAGGTAGAATGCGCAAG-TCGGGGATCGGCCTGGTCCCTCCTACATGCTGTCGAT
66 GCCGGTCGGAGAGGCAGAATGCACAAGCT-GAGGATCAGCCCGGTCCCTCCTGCATGCTGTCGAT
** * * * *
30215690 CCTGTTACTGGTTCTACTGTCGCAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCC
130 CCTCCTACTGGTCCTACTGTCGCAACCCTCGATCCGA-TCCAATCTTAGACTAGGAATGAACTCC
30215754 ATA
194 ATA
* * * *
30215757 TGCTTAGACATGGAATGAACCCCGTCTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
30215822 GCCAGTCGAAGAGGCAGAAAGCACAAGCTGAGCATCAGCCCGGTTCCC-CCTGCGTGCTGTCAAT
66 GCCGGTCGGAGAGGCAGAATGCACAAGCTGAGGATCAGCCCGG-TCCCTCCTGCATGCTGTCGAT
30215886 CCT
130 CCT
30215889 ACTGCCACAA
Statistics
Matches: 269, Mismatches: 53, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
195 4 0.01
196 260 0.97
197 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (196 bp):
GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGTCGGAGAGGCAGAATGCACAAGCTGAGGATCAGCCCGGTCCCTCCTGCATGCTGTCGATC
CTCCTACTGGTCCTACTGTCGCAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAACTCCAT
A
Found at i:30216047 original size:158 final size:157
Alignment explanation
Indices: 30215759--30216129 Score: 415
Period size: 158 Copynumber: 2.3 Consensus size: 157
30215749 ACTCCATATG
* * *
30215759 CTTAGACATGGAATGAACCCCGTCTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
30215824 CAGTCGAAGAGGCAGAAAGCACAAGCTGAGCATCAGCCCGGTTCCCCCTGCGTGCTGTCAATCCT
65 CAGCCCAAGAGGCAGAAAGCACAAGCTGAGCACCAGCCCGGTCCCCCCTGCGAGCTATCAATCCT
* *
30215889 ACTGCCACAACCCTCGGTCCGATTCGAT
130 ACTGCCACAACCCTCGGTCCGATCCAAT
* *
30215917 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAG-
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * * * *
30215981 CTGACCCAAGAGGCA-AAATGCGTAAG-TCGGGGACCGGCCCGGTCCCCCCTGCGAGCTATCGAT
65 CAG-CCCAAGAGGCAGAAA-GCACAAGCT-GAGCACCAGCCCGGTCCCCCCTGCGAGCTATCAAT
***
30216044 CCTACTGCTGTAACCCTCGGTCCGATCCAAT
127 CCTACTGCCACAACCCTCGGTCCGATCCAAT
* * * * *
30216075 CTTAGACTAGCAATGAACTCCGTGTGCCTAAGTCAACTCACAAAATGAGCGTGCG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
30216130 AGCACTGAAC
Statistics
Matches: 178, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 7 0.04
158 171 0.96
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
AGCCCAAGAGGCAGAAAGCACAAGCTGAGCACCAGCCCGGTCCCCCCTGCGAGCTATCAATCCTA
CTGCCACAACCCTCGGTCCGATCCAAT
Found at i:30216151 original size:158 final size:158
Alignment explanation
Indices: 30215859--30216160 Score: 352
Period size: 158 Copynumber: 1.9 Consensus size: 158
30215849 CTGAGCATCA
* * * * *
30215859 GCCCGGTTCCCCCTGCGTGCTGTCAATCCTACTGCCACAACCCTCGGTCCGATTCGATCTTAGAC
1 GCCCGGTCCCCCCTGCGAGCTATCAATCCTACTGCCACAACCCTCGGTCCGATCCAATCTTAGAC
* * * * * * ** * **
30215924 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCTGACCCA
66 TAGCAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAACCAACCCA
30215989 AGAGGCAAAATGCGTAAGTCGGGGACCG
131 AGAGGCAAAATGCGTAAGTCGGGGACCG
* ***
30216017 GCCCGGTCCCCCCTGCGAGCTATCGATCCTACTGCTGTAACCCTCGGTCCGATCCAATCTTAGAC
1 GCCCGGTCCCCCCTGCGAGCTATCAATCCTACTGCCACAACCCTCGGTCCGATCCAATCTTAGAC
* * * * * **
30216082 TAGCAATGAACTCCGTGTGCCTAAGTCAACTCACAAAATGAGCGTGCGAGCACTGAACCAATCTG
66 TAGCAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAACCAACCCA
*
30216147 AGAGGCATAATGCG
131 AGAGGCAAAATGCG
30216161 CAGGTCAAGG
Statistics
Matches: 116, Mismatches: 28, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
158 116 1.00
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.21
Consensus pattern (158 bp):
GCCCGGTCCCCCCTGCGAGCTATCAATCCTACTGCCACAACCCTCGGTCCGATCCAATCTTAGAC
TAGCAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAACCAACCCA
AGAGGCAAAATGCGTAAGTCGGGGACCG
Found at i:30216177 original size:158 final size:158
Alignment explanation
Indices: 30215770--30216178 Score: 345
Period size: 158 Copynumber: 2.6 Consensus size: 158
30215760 TTAGACATGG
* * * * * ** * ** *
30215770 AATGAACCCCGTCTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGTCGAAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAACCAACCCAAGAG
* * * * * * * *
30215835 GCAGAAA-GCACAAG-CTGAGCATCAGCCCGGTTCCCCCTGCGTGCTGTCAATCCTACTGCCACA
66 GCA-AAATGCGCAAGTC-AAGGACCGGCCCGGTCCCCCCTGCGAGCTATCAATCCTACTGCCACA
* * * *
30215898 ACCCTCGGTCCGATTCGATCTTAGACTGGG
129 ACCCTCGGTCCGATCCAATCTTAGACTAGC
* * * * ** * **
30215928 AATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCTGACCCAAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAACCAACCCAAGAG
* ** * ***
30215993 GCAAAATGCGTAAGTCGGGGACCGGCCCGGTCCCCCCTGCGAGCTATCGATCCTACTGCTGTAAC
66 GCAAAATGCGCAAGTCAAGGACCGGCCCGGTCCCCCCTGCGAGCTATCAATCCTACTGCCACAAC
30216058 CCTCGGTCCGATCCAATCTTAGACTAGC
131 CCTCGGTCCGATCCAATCTTAGACTAGC
* * * * * **
30216086 AATGAACTCCGTGTGCCTAAGTCAACTCACAAAATGAGCGTGCGAGCACTGAACCAATCTGAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAACCAACCCAAGAG
* * *
30216151 GCATAATGCGCAGGTCAAGGATCGGCCC
66 GCAAAATGCGCAAGTCAAGGACCGGCCC
30216179 AAACCCCCTC
Statistics
Matches: 200, Mismatches: 49, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
157 3 0.01
158 196 0.98
159 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAACCAACCCAAGAG
GCAAAATGCGCAAGTCAAGGACCGGCCCGGTCCCCCCTGCGAGCTATCAATCCTACTGCCACAAC
CCTCGGTCCGATCCAATCTTAGACTAGC
Found at i:30218140 original size:26 final size:26
Alignment explanation
Indices: 30218103--30218154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30218093 GCTCAAAATA
30218103 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
30218129 TTAGAC-ATGGAATGAACTCCGTATGC
1 TTAGACTA-GGAATGAACTCCGTATGC
30218155 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:30218322 original size:26 final size:26
Alignment explanation
Indices: 30218286--30218338 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30218276 TTGGTTTGAT
30218286 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
30218312 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30218338 C
1 C
30218339 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30218444 original size:184 final size:184
Alignment explanation
Indices: 30218103--30218496 Score: 445
Period size: 184 Copynumber: 2.1 Consensus size: 184
30218093 GCTCAAAATA
30218103 TTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 TTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * *
30218168 CAAAACGAGCGTGCTGGCGTTCAACCGATCGAAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCG
66 CAAAACGAGCATACGGGCGCTCAACCGACCGAAGAGACAGAATGCGCAAGCCGGGGATAAGCCCG
* * ** * ** * * *
30218233 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTAGTTTGGTTTGATC
131 GTCACCCATGCCCGCTGTCGATCCTGCTACCACAACCCCCAGTTCGGCTTGAGC
* **
30218287 TTAGACTAGGAATGAACTCCGTATGCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTTAACCC
1 TTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
** * * * *
30218351 ATGAAATGAGCATACGGGCGCTCAACCGACCGGAGAGACATAATGCGTAAGCCGGGGATAAGCCC
65 ACAAAACGAGCATACGGGCGCTCAACCGACCGAAGAGACAGAATGCGCAAGCCGGGGATAAGCCC
* * * *
30218416 GGTCTATCGAT-CCCGCTGTC-AGTCCTGCTACCACAACCCCCGGTTCGGCTTGGGC
130 GGTC-ACCCATGCCCGCTGTCGA-TCCTGCTACCACAACCCCCAGTTCGGCTTGAGC
30218471 TTAGAC-ATGGAATGAACTCCGTATGC
1 TTAGACTA-GGAATGAACTCCGTATGC
30218497 CTAAGCCAAC
Statistics
Matches: 175, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 3 0.02
184 170 0.97
185 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
TTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CAAAACGAGCATACGGGCGCTCAACCGACCGAAGAGACAGAATGCGCAAGCCGGGGATAAGCCCG
GTCACCCATGCCCGCTGTCGATCCTGCTACCACAACCCCCAGTTCGGCTTGAGC
Found at i:30218678 original size:26 final size:26
Alignment explanation
Indices: 30218640--30218692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30218630 CTGATCTAAT
30218640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30218666 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30218692 C
1 C
30218693 CTAAGCGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30220281 original size:159 final size:156
Alignment explanation
Indices: 30219861--30220361 Score: 463
Period size: 159 Copynumber: 3.2 Consensus size: 156
30219851 AACTCCGTAT
* * * *
30219861 GCTTAGACAAGGAATGAACTCCGATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAAT
1 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTC-AG
* * * *
30219926 CGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGGCTCGGTCTCCC-CTACGTGCTGTCGATCC
65 CCGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CCCTCTGCGTGCTGTCGATCC
* *
30219990 TGCTGTCACAACCCTCGATCCGATCCGA
129 CGCTGCCACAACCCTCGATCCGATCCGA
* * * * * * * * *
30220018 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCTACGAAACGAGCGTATAGGCGCTGA
1 GCTTAGACAT-GGAATGAAC-TCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
* * * * * * * *
30220082 GCCGACCCAAGAGGCATAATGCGCAAGCCGAGGATTGGCCCGTTCCCTCTCTGTGTGCTGTCGGT
64 GCCG-CCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CTCTGCGTGCTGTCGAT
* * * *
30220147 CCCGCTGCCACAACCCTCGGTCCG-GCTGGG
127 CCCGCTGCCACAACCCTCGATCCGATC-CGA
* * * *
30220177 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * *
30220242 CCCGCCGGAGAGGTAGAATACGTAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCC
65 -CCGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCC
** * * * *
30220307 TACTGCC-GAACCCTTGATCCGGTCTGA
129 CGCTGCCACAACCCTCGATCCGATCCGA
*
30220334 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCC-TATGC
30220362 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 55 0.21
158 91 0.34
159 115 0.43
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
CGCCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCCG
CTGCCACAACCCTCGATCCGATCCGA
Found at i:30220364 original size:26 final size:26
Alignment explanation
Indices: 30220335--30220387 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30220325 CCGGTCTGAT
30220335 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
30220361 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30220387 C
1 C
30220388 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30220744 original size:26 final size:26
Alignment explanation
Indices: 30220666--30220745 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 26
30220656 TTGGTCTGAT
30220666 CTTAGAC-TGAGAATGAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
30220692 CTTAGACATGGAAATGAACTCCATATG
1 CTTAGACATGG-AATGAACTCCATATG
*
30220719 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
30220745 C
1 C
30220746 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 23 0.45
27 28 0.55
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30221062 original size:159 final size:158
Alignment explanation
Indices: 30220718--30221220 Score: 370
Period size: 158 Copynumber: 3.2 Consensus size: 158
30220708 AACTCCATAT
* *
30220718 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGTGCTCAG
* * * ** *
30220783 CCGACCGGAGAGGCGGAATGCGAAAGCCAGGGATCCACCTGGTCCCCCCTACATGCTGTCGATCC
66 CCAACCGAAGAGGCAGAATGCGAAAGCCAGGGATCCACCCAGTCCCCCCGACATGCTGTCGATCC
** *
30220848 TGCTGTTACAACCCTCGGTCCGGTCTGA
131 TGCTGCCACAACCCTCGGTCCGGACTGA
* * * * ** * * *
30220876 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTACGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGTGCTCA
* * * * * * ** * *
30220940 GTCAATCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAGTCCCACTCGACGTGCTGTCGAT
65 GCCAACCGAAGAGGCAGAATGCGAAAGCCAGGGATCCACCCAGTCCC-CCCGACATGCTGTCGAT
*
30221005 -CTCGCTGCCACAACCCTCGGTCC-GACTGGG
129 CCT-GCTGCCACAACCCTCGGTCCGGACT-GA
* * * * * * *
30221035 GCTTAGACATGGAATGAACTCCCTATGCCTAA-TCCAACCCAGGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGT-CAACCCATGAAACGAGCATACAGGTGCTCA
* * * * * ** * * * ** *
30221099 GCCGACTGGAGAGGTAGAATGCGCAAGCC-GAGGATCGGCTCAGTCCCCCCTACGTGCTACCAAT
65 GCCAACCGAAGAGGCAGAATGCGAAAGCCAG-GGATCCACCCAGTCCCCCCGACATGCTGTCGAT
* * * * * *
30221163 CCTGTTGTCGCAACCCTCGGTTCGGTCCGA
129 CCTGCTGCCACAACCCTCGGTCCGGACTGA
* *
30221193 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
30221221 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 67, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 144 0.54
159 121 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGTGCTCAG
CCAACCGAAGAGGCAGAATGCGAAAGCCAGGGATCCACCCAGTCCCCCCGACATGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGGACTGA
Found at i:30221238 original size:26 final size:26
Alignment explanation
Indices: 30221194--30221246 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30221184 TCGGTCCGAT
*
30221194 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
*
30221220 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
30221246 C
1 C
30221247 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:30221438 original size:318 final size:324
Alignment explanation
Indices: 30221008--30221614 Score: 714
Period size: 318 Copynumber: 1.9 Consensus size: 324
30220998 TGTCGATCTC
* * *
30221008 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAATCCAAC
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAAATCCCTATGCCTAAGCCAAC
* * * * ** * *
30221073 CCAGGAAACGGGCGTGCGGGCGCTCAGCCGACTGGAGAGGTAGAATGCGCAAGCCGAGGATCGGC
66 CCAGAAAACGAGCGTGCGAGAGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
30221138 TCAG-TCCCC-CCTACGTGCTACCAAT-C-CTG-T-TG-T-CGCAACCCTCGGT-TCGGTCCGAT
131 -CAGATCCCCTCCTACGTGCTACCAATCCACTGCTCTGCTACGCAACCCTCGGTCT-GGTCCGAT
* * * *
30221194 CTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATAAACT-TCGTATGCCTAAGTCAAC
194 CATAGACTGGGAATGAACTCCGTATGCTTA-ACAT-GGAATAAACTCT-GTATGCCTAAGCCAAC
30221257 CCACGAAACGAGCGTGCGGGCGATCAGTCCGGTCCCCTTCTGCGTGCTGTCGATCCCGCGGTCGG
256 CCACGAAACGAGCGTGCGGGCGATCAGTCCGGTCCCCTTCTGCGTGCTGTCGATCCCGCGGTCGG
30221322 TCCT
321 TCCT
** * * ***
30221326 GCTGCCATGACCCTCGGTCCGGCTGGGGCTTAAACATGGAATTAAATTTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAAATCCCTATGCCTAAGCCAAC
* * * * *
30221391 CCAGAAAATGAGCGTGTGAGAGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGAC
66 CCAGAAAACGAGCGTGCGAGAGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* * *
30221456 CCGATCCCCTCTTACGTGCTACCAATCCAGCTGCTGGCCCTGCTACCGCAACCCTCGGTCTGGTT
131 CAGATCCCCTCCTACGTGCTACCAATCCA-CTGCT----CTGCTA-CGCAACCCTCGGTCTGGTC
* *
30221521 TGATCATAGACTGGGAATGAACTCCGTATGCTTAACATGGAATGAACTCTGTATGCCTAAGCCAA
190 CGATCATAGACTGGGAATGAACTCCGTATGCTTAACATGGAATAAACTCTGTATGCCTAAGCCAA
* ** *
30221586 CCGACGAAATTAGCGTGCGGGCGCTCAGT
255 CCCACGAAACGAGCGTGCGGGCGATCAGT
30221615 AAATCAGAGA
Statistics
Matches: 236, Mismatches: 36, Indels: 22
0.80 0.12 0.07
Matches are distributed among these distances:
317 2 0.01
318 112 0.47
319 15 0.06
320 1 0.00
322 3 0.01
323 1 0.00
328 2 0.01
329 1 0.00
330 49 0.21
331 49 0.21
332 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (324 bp):
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAAATCCCTATGCCTAAGCCAAC
CCAGAAAACGAGCGTGCGAGAGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
CAGATCCCCTCCTACGTGCTACCAATCCACTGCTCTGCTACGCAACCCTCGGTCTGGTCCGATCA
TAGACTGGGAATGAACTCCGTATGCTTAACATGGAATAAACTCTGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCGATCAGTCCGGTCCCCTTCTGCGTGCTGTCGATCCCGCGGTCGGTCCT
Found at i:30221941 original size:159 final size:157
Alignment explanation
Indices: 30221558--30221968 Score: 443
Period size: 159 Copynumber: 2.6 Consensus size: 157
30221548 ATGCTTAACA
* * * * * *
30221558 TGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATTAGCGTGCGGGCGCTCAGTAAATCAGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCAGTCGGA
* * ** *
30221623 GAGGCAGAATGAGCGAG-TCGGGGATCGACTCGATCCCCCCTGTGTGCTGTCGATCCTGCTACCG
66 GAGGCAGAATGCGCAAGCT-GGGGATCGACTCGATCCCCCCTGTGTGCTACCGATCCTGCTACCA
* *
30221687 CAACCCGTGGTCCGGTCTGATCTTAGTC
130 CAACCCGTGGTCCGGCCTGAGCTTAGTC
* * * * *
30221715 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCAG-CTG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCAGTC-G
* * *
30221779 GAGAGGCATAATGCGCAAGCTGGGGATCGACTCGATCCCCCTTTGTGTGCTACCGGTCCTGCTAC
64 GAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCC-CTGTGTGCTACCGATCCTGCTAC
* * * *
30221844 TACAA-CCTTCGGTCC-GCCTGGGGCTTAGATG
128 CACAACCCGT-GGTCCGGCCT-GAGCTTAG-TC
* * * * *
30221875 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGTGCTCAGTCGGTCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCAGTCGGA
* *
30221940 GAGGCAGAATGCACAAGCTGGGAATCGAC
66 GAGGCAGAATGCGCAAGCTGGGGATCGAC
30221969 CTAATCCCTC
Statistics
Matches: 208, Mismatches: 38, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 91 0.44
159 112 0.54
160 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.20
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCAGTCGGA
GAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGTGTGCTACCGATCCTGCTACCAC
AACCCGTGGTCCGGCCTGAGCTTAGTC
Found at i:30223159 original size:26 final size:26
Alignment explanation
Indices: 30223130--30223182 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30223120 CCGGTTTGAT
30223130 CTTAGAC-TGGGAATGAACTCCGTCTG
1 CTTAGACAT-GGAATGAACTCCGTCTG
30223156 CTTAGACATGGAATGAACTCCGTCTG
1 CTTAGACATGGAATGAACTCCGTCTG
30223182 C
1 C
30223183 CTAAGCCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTCTG
Found at i:30224804 original size:159 final size:157
Alignment explanation
Indices: 30224377--30224804 Score: 407
Period size: 159 Copynumber: 2.7 Consensus size: 157
30224367 ACTCTGTATG
** * * *
30224377 CTTAGACAAAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* *
30224442 CGGCCGGAGAGGCAGAATGCGCAAGTCGG-GGATCGGCCCGGTCCCCCCTCCATGCTATCAATCC
66 CGGCC-GAGAGGCAGAATGCGCAAG-CGGAGGATCGACCCGGTCCCCCCTCCATGCTACCAATCC
** * * * *
30224506 TGCTGTCACAACCCTCGGTCTGATTCGAT
129 CACTGCCACAACCCTCAGTCAGATGCGAT
* * * * *
30224535 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * ** * * **
30224599 CCGGTCGAAGAGGCATAATGCGCAAGC-TAGGGATCGACCCAAT-CCCCCTCCGCGTGCTGCCGG
65 CCGGCCG-AGAGGCAGAATGCGCAAGCGGA-GGATCGACCCGGTCCCCCCT-C-CATGCTACCAA
* * *
30224662 TCCCACTGCCACAACCCTCAGTCCAGCTGGGGT
126 TCCCACTGCCACAACCCTCAGT-CAGATGCGAT
* * **
30224695 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTATGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
30224759 CGGCCAGAGAGGCAGAATACACAAGCGGAGGATCGATCCGGTCCCC
66 CGGCC-GAGAGGCAGAATGCGCAAGCGGAGGATCGACCCGGTCCCC
30224805 TTACGTGCTG
Statistics
Matches: 212, Mismatches: 47, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
157 8 0.04
158 86 0.41
159 107 0.50
160 11 0.05
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCGAGAGGCAGAATGCGCAAGCGGAGGATCGACCCGGTCCCCCCTCCATGCTACCAATCCCA
CTGCCACAACCCTCAGTCAGATGCGAT
Found at i:30224892 original size:26 final size:26
Alignment explanation
Indices: 30224851--30224903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30224841 CTGGTCTGAT
30224851 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
30224877 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30224903 C
1 C
30224904 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30225626 original size:26 final size:26
Alignment explanation
Indices: 30225588--30225638 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30225578 CTCAAAATCA
30225588 TAGACTGGAAATGAACTCCGTATGCT
1 TAGACTGGAAATGAACTCCGTATGCT
30225614 TAGACATGG-AATGAACTCCGTATGC
1 TAGAC-TGGAAATGAACTCCGTATGC
30225639 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCT
Found at i:30226136 original size:26 final size:26
Alignment explanation
Indices: 30226089--30226138 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
30226079 GTCCGATCTC
**
30226089 AGACTGGGAATGAACTTTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
30226115 AGACTGGGGATTAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
30226139 CTAAGTCAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:30226860 original size:26 final size:26
Alignment explanation
Indices: 30226820--30226872 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30226810 GGCTCAAAAT
30226820 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
30226846 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
30226872 C
1 C
30226873 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:30227145 original size:159 final size:159
Alignment explanation
Indices: 30226846--30227342 Score: 504
Period size: 159 Copynumber: 3.1 Consensus size: 159
30226836 ACTCCGTATG
* * * *
30226846 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
* * * * * *
30226910 CCGGTCGGAGAGACAGAATGCGCAAGGCGGGGATC-ACCCCGGTCCCCC-CTTGTGAGCTGTCGA
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGA-CCCGGTCCCCCTC-TGCGTGCTGCCGA
* ** *
30226973 TCCTACTGTCACAACCCTCGATCCGGTCCGAT
128 TCCTGCTACCACAACCCTCGGTCCGGTCCGAT
* * * *
30227005 CTGAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAGC
* * * * * *
30227070 CGGTCGAAAAGGCATAATGCGCAAGTCGAGGATCGACCCAGTCCCCCTCTGCGTGCTACCTATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCC
* * **
30227135 CGCTACCACAACCCTCGGTCCGG-CTGGGG
131 TGCTACCACAACCCTCGGTCCGGTC-CGAT
* * * * *
30227164 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCATTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
* * * * * *
30227228 CCGGCCGGGGAGGCAGAATACGCAAGT-TAGGGATCGGCCCGGTCCCCCT-TGCGTGCTGGCGAT
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGA-GGATCGACCCGGTCCCCCTCTGCGTGCTGCCGAT
** * *
30227291 CCTGCTACTGCAACCCTCGGTCTGGTCTGAT
129 CCTGCTACCACAACCCTCGGTCCGGTCCGAT
30227322 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
30227343 GTATCTTAGA
Statistics
Matches: 274, Mismatches: 56, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 55 0.20
159 215 0.78
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCACAACCCTCGGTCCGGTCCGAT
Found at i:30227371 original size:25 final size:25
Alignment explanation
Indices: 30227316--30227371 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
30227306 CTCGGTCTGG
30227316 TCTG-ATCTTAGACTGGGAATGAAC
1 TCTGTATCTTAGACTGGGAATGAAC
* * * *
30227340 TCCGTATCTTAGATTGGGGATGAAT
1 TCTGTATCTTAGACTGGGAATGAAC
30227365 TCTGTAT
1 TCTGTAT
30227372 GCCTAAGTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 3 0.12
25 23 0.88
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (25 bp):
TCTGTATCTTAGACTGGGAATGAAC
Found at i:30227857 original size:159 final size:158
Alignment explanation
Indices: 30227479--30228180 Score: 444
Period size: 158 Copynumber: 4.5 Consensus size: 158
30227469 CTGCCGGTCT
* * ** *
30227479 TGCTG-CACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATCAACT-C---TGTATAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGACTAAGGCTTAGACATGGAAAGAACTCCATATGCATAAGCCAA
** * * * * * * * * * * * * *
30227539 CCCATAAAATGAGCGTACAGGTGGTCAGC-CAGCCAGAGAGGCAGAATGCACGAGCCGAGGATTG
66 CCCACGAAACGAGCGTGCGGGTGCTGAGCTGATCGA-AGAGGCATAATGCGCAAGCTGAGGA-TC
* * * *
30227603 ACCCGGTCCCCC-CTACGTGCTATCGATCC
129 AGCCGGTCCCCCTTTGCGTGCTACCGATCC
* * * ** * * * * *
30227632 TGCTGCCACAACCCTCTGTCTG-GTCCGATCTTTGAC-TAGGAATGAACTCCGTATGCATAAGTC
1 TGCTGCCACAACCCTCGGTCCGACTAAG-GCTTAGACAT-GGAAAGAACTCCATATGCATAAGCC
* *
30227695 AACCCACGAAACGAGCATGCGGGTGCTGAGCTGATCGAAGAGGCATAATGCACAAGCTGAGGATC
64 AACCCACGAAACGAGCGTGCGGGTGCTGAGCTGATCGAAGAGGCATAATGCGCAAGCTGAGGATC
* * * *
30227760 GGCCAGATCCCCCTTTGCGTGCTGCCGGTCC
129 AGCC-GGTCCCCCTTTGCGTGCTACCGATCC
* * *
30227791 TGCTGCCACAACCCTCGATCCTG-CTAAGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCA
1 TGCTGCCACAACCCTCGGTCC-GACTAAGGCTTAGACATGGAAAGAACTCCATATGCATAAGCCA
* * ** * * * * ** *
30227855 ACCCACGAAACGGGCGTGCAGGTGCCCA-ATCGGTCAAAGAGGCAGAATATGCAAGCTGGGGATC
65 ACCCACGAAACGAGCGTGCGGGTGCTGAGCT-GATCGAAGAGGCATAATGCGCAAGCTGAGGATC
*
30227919 AGCCCGGTCCCCC-TTGCGTGCTATCGATCC
129 AG-CCGGTCCCCCTTTGCGTGCTACCGATCC
* * * * * * * * * *
30227949 TACTGTCGCAACCCTCGGTCCGGTCCAA-TCTTAGA-TTGCAAATGAACTCCATATGCATACGTC
1 TGCTGCCACAACCCTCGGTCC-GACTAAGGCTTAGACATGGAAA-GAACTCCATATGCATAAGCC
* ** * * * *
30228012 AACCCACGAAACGAGCGTGTGGGCACTGAGCCGACCGAAGAGCCATAATGCGCAAGC-CAGGGAT
64 AACCCACGAAACGAGCGTGCGGGTGCTGAGCTGATCGAAGAGGCATAATGCGCAAGCTGA-GGAT
* * * *
30228076 TAGTCGGTCCCCCTCTGTGTGCTACCGATCC
128 CAGCCGGTCCCCCTTTGCGTGCTACCGATCC
* * ** * * *
30228107 CGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGACTAAGGCTTAGACATGGAAAGAACTCCATATGCATAAGCCAA
*
30228172 TCCACGAAA
66 CCCACGAAA
30228181 TGGGCATCCG
Statistics
Matches: 411, Mismatches: 117, Indels: 37
0.73 0.21 0.07
Matches are distributed among these distances:
153 8 0.02
154 29 0.07
155 1 0.00
157 19 0.05
158 223 0.54
159 125 0.30
160 6 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
TGCTGCCACAACCCTCGGTCCGACTAAGGCTTAGACATGGAAAGAACTCCATATGCATAAGCCAA
CCCACGAAACGAGCGTGCGGGTGCTGAGCTGATCGAAGAGGCATAATGCGCAAGCTGAGGATCAG
CCGGTCCCCCTTTGCGTGCTACCGATCC
Found at i:30227947 original size:317 final size:316
Alignment explanation
Indices: 30227604--30228185 Score: 756
Period size: 317 Copynumber: 1.8 Consensus size: 316
30227594 CGAGGATTGA
* * * * *
30227604 CCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCACAACCCTCTGTCTGGTCCGATCTTTGACT
1 CCCGGTCCCCCCTACGTGCTATCGATCCTACTGCCACAACCCTCGGTCCGGTCCAATCTTAGA-T
* * ** * *
30227669 AG-GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGTGCTGAGCTGATCGA
65 AGCAAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCCGACCGA
* * * * * * *
30227733 AGAGGCATAATGCACAAG-CTGAGGATCGGCCAGATCCCCCTTTGCGTGCTGCCGGTCCTGCTGC
130 AGAGCCATAATGCACAAGCCAG-GGATCAGCC-GATCCCCCTCTGCGTGCTACCGATCCCGCTGC
30227797 CACAACCCTCGATCCTG-CTAAGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCAC
193 CACAACCCTCGATCC-GACTAAGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCAC
30227861 GAAACGGGCGTGCAGGTGCCCAATCGGTCAAAGAGGCAGAATATGCAAGCTGGGGATCAG
257 GAAACGGGCGTGCAGGTGCCCAATCGGTCAAAGAGGCAGAATATGCAAGCTGGGGATCAG
* * * * *
30227921 CCCGGTCCCCCTTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTCCGGTCCAATCTTAGATT
1 CCCGGTCCCCCCTACGTGCTATCGATCCTACTGCCACAACCCTCGGTCCGGTCCAATCTTAGATA
* * *
30227986 GCAAATGAACTCCATATGCATACGTCAACCCACGAAACGAGCGTGTGGGCACTGAGCCGACCGAA
66 GCAAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCCGACCGAA
* * * * * *
30228051 GAGCCATAATGCGCAAGCCAGGGATTAGTCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCCAT
131 GAGCCATAATGCACAAGCCAGGGATCAGCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCAC
* ** * * *
30228116 AACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAATCCACGAAA
196 AACCCTCGATCCGACTAAGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCACGAAA
*
30228181 TGGGC
261 CGGGC
30228186 ATCCGGGCAC
Statistics
Matches: 223, Mismatches: 39, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
315 1 0.00
316 91 0.41
317 129 0.58
318 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (316 bp):
CCCGGTCCCCCCTACGTGCTATCGATCCTACTGCCACAACCCTCGGTCCGGTCCAATCTTAGATA
GCAAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCCGACCGAA
GAGCCATAATGCACAAGCCAGGGATCAGCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCAC
AACCCTCGATCCGACTAAGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCAGGTGCCCAATCGGTCAAAGAGGCAGAATATGCAAGCTGGGGATCAG
Found at i:30228227 original size:26 final size:26
Alignment explanation
Indices: 30228198--30228255 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
30228188 CCGGGCACAC
*
30228198 AGCCGGCCGGAGAGGCAGAATACGCA
1 AGCCGGCCGGAGAGGCAGAATACGAA
* * *
30228224 AGCCGACCGGAGAGGCGGAATGCGAA
1 AGCCGGCCGGAGAGGCAGAATACGAA
30228250 AGCCGG
1 AGCCGG
30228256 GGATCAACCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.26, G:0.41, T:0.03
Consensus pattern (26 bp):
AGCCGGCCGGAGAGGCAGAATACGAA
Found at i:30228552 original size:342 final size:342
Alignment explanation
Indices: 30227907--30228571 Score: 839
Period size: 342 Copynumber: 1.9 Consensus size: 342
30227897 CAGAATATGC
* * * * * ** * *
30227907 AAGCTGGGGATCAGCCCGGTCCCCCTTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTCCGG
1 AAGCCGGGGATCAACCCGGTCCCCCCTACATGCTATCGATCCTACTACCACAACCCTCGGTCCGA
* **
30227972 TCCAATCTTAGATTGCAAATGAACTCCATATGCATACGTCAACCCACGAAACGAGCGTGTGGGCA
66 TCCAATCTTAGATTGCAAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGCA
* * * * *
30228037 CTGAGCCGACCGAAGAGCCATAATGCGCAAGCCAGGGATTAGTCGGTCCCCCTCTGTGTGCTACC
131 CTGAGCCGACCGAAGAGCCATAATGCGCAAGCCAGGGATCAGCCAGTCCCACTCTGCGTGCTACC
* * *
30228102 GATCCCGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAA
196 GATCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* ** *
30228167 GCCAATCCACGAAATGGGCATCCGGGCACACAGCCGGCCGGAGAGGCAGAATACGCAAGCCGACC
261 GCCAACCCACGAAACAGGCATCCGGGCACACAGCCGACCGGAGAGGCAGAATACGCAAGCCGACC
30228232 GGAGAGGCGGAATGCGA
326 GGAGAGGCGGAATGCGA
* * *
30228249 AAGCCGGGGATCAACCTGGTCCCCCCTACATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGA
1 AAGCCGGGGATCAACCCGGTCCCCCCTACATGCTATCGATCCTACTACCACAACCCTCGGTCCGA
** ** ** * * *
30228314 TCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTACGGGCA
66 TCCAATCTTAGATTGCAAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGCA
* * * * * *
30228379 CTGAGTCGATCGAAGAGGCATAATGCGCAAGTCAGGGATCGGCCCAGTCCCACTC-GACGTGCTG
131 CTGAGCCGACCGAAGAGCCATAATGCGCAAGCCAGGGATCAG-CCAGTCCCACTCTG-CGTGCTA
*
30228443 TCGATCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCT
194 CCGATCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * * * * *
30228508 AATCCAACCCAGGAAACAGGCGTGCGGG-GCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGA
259 AAGCCAACCCACGAAACAGGCATCCGGGCACACAGCCGACCGGAGAGGCAGAATACGCAAGCCGA
30228572 GGATCGGCTC
Statistics
Matches: 270, Mismatches: 51, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
342 174 0.64
343 96 0.36
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (342 bp):
AAGCCGGGGATCAACCCGGTCCCCCCTACATGCTATCGATCCTACTACCACAACCCTCGGTCCGA
TCCAATCTTAGATTGCAAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGCA
CTGAGCCGACCGAAGAGCCATAATGCGCAAGCCAGGGATCAGCCAGTCCCACTCTGCGTGCTACC
GATCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAACAGGCATCCGGGCACACAGCCGACCGGAGAGGCAGAATACGCAAGCCGACC
GGAGAGGCGGAATGCGA
Found at i:30228665 original size:26 final size:26
Alignment explanation
Indices: 30228636--30228688 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30228626 TCGGTCCGAT
30228636 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30228662 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30228688 C
1 C
30228689 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30229205 original size:201 final size:197
Alignment explanation
Indices: 30228832--30229343 Score: 504
Period size: 201 Copynumber: 2.6 Consensus size: 197
30228822 TTCGATAGGG
* * * * *
30228832 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAAGCCACGAAACGAGCGTGCAGCCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGCCACTCAA
* * ** *
30228897 CCGGTCGGAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCTGTGGGCTATCAATC
66 CCGGCCGAAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCTACGGGCTACCAATC
* * * * * *
30228962 CTGCTACTGGTCTTGCTACCGCAACCCTCAGTCTAGTCCGATCTTAGACTAGTAATGAACTCTGT
131 CTACTACTGGTCCTGCTACCGCAACCCTCAGTCGAGTCCGATCTTAGAATAGGAAAGAACTCTGT
30229027 AT
196 AT
* * *
30229029 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGTGTACAGGCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGC--GTG--CAGCCAC
* * * * * * * * *
30229094 TCAACTGGCCGAAGAGGTAGAATGTGCAAGCCGAGGATCGGCCTGGTCCCCTCGTACGTGCTACC
62 TCAACCGGCCGAAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCTACGGGCTACC
* * * * ** *
30229159 GATCCTACTGCTGGTCCTGCTATCGCAAGCCTTGGTCCGA-TCCGATCTTAGAATGGGAAAGAAC
127 AATCCTACTACTGGTCCTGCTACCGCAACCCTCAGT-CGAGTCCGATCTTAGAATAGGAAAGAAC
30229223 TCTGTAT
191 TCTGTAT
* * * * * * * * *
30229230 GGTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGCCACTCAA
** * * ** * *
30229295 CCGATCGAAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGGTCCCCCC
66 CCGGCCGAAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCC
30229344 TGTGTGCTAT
Statistics
Matches: 254, Mismatches: 56, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
197 91 0.36
199 6 0.02
201 155 0.61
202 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGCCACTCAA
CCGGCCGAAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCTACGGGCTACCAATC
CTACTACTGGTCCTGCTACCGCAACCCTCAGTCGAGTCCGATCTTAGAATAGGAAAGAACTCTGT
AT
Found at i:30229243 original size:26 final size:26
Alignment explanation
Indices: 30229206--30229256 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30229196 CGATCCGATC
*
30229206 TTAGAATGGGAAAGAACTCTGTATGG
1 TTAGAATGGGAAAGAACTCCGTATGG
*
30229232 TTAGACAT-GGAACGAACTCCGTATG
1 TTAGA-ATGGGAAAGAACTCCGTATG
30229257 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGAATGGGAAAGAACTCCGTATGG
Found at i:30229484 original size:158 final size:156
Alignment explanation
Indices: 30229232--30229731 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 156
30229222 CTCTGTATGG
* * *
30229232 TTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGG-GCTCAGCA
* * * * *
30229297 GATCGAAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTGTGTGCTATCGATCTTG
65 G-CCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCCTG
*
30229362 CTGCCACAACCCTCGATCCGATCCGATC
129 CTGCCACAACCCTCGATCCGGTCCGATC
* ** * * *
30229390 TTAGAC-TGGGAATGAACTTCGTATGCCTAAGTTAACCTATGAAATGAGTGTGCGGGTGCTGAGT
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGG-GCTCAG-
* ** * * *
30229454 CAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCTTTCTATGTGCTGTCGGTCC
63 CAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCC-CCCTGTGTGCTATCGATCC
* ** *
30229519 CGCTGCCACAACCCTC-AGTCCGGTTGGGTC
127 TGCTGCCACAACCCTCGA-TCCGGTCCGATC
* * * * *
30229549 TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGTGTGCAGGGGCTTAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGC-GGGGCTCAG-C
* * *** * * *
30229614 GGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGTTCGGT-CCCCCTGCGTGCTACCGATCCTA
64 AGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCCTG
** * * *
30229678 CTATCGCAACCCTCGGTCCGGTCTGATC
129 CTGCCACAACCCTCGATCCGGTCCGATC
* *
30229706 TTAGAC-TGGGAATGCACTTCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
30229732 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 53 0.20
158 92 0.34
159 121 0.45
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGGCTCAGCAG
CCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCCTGCT
GCCACAACCCTCGATCCGGTCCGATC
Found at i:30229741 original size:26 final size:26
Alignment explanation
Indices: 30229705--30229757 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30229695 CCGGTCTGAT
* *
30229705 CTTAGACTGGGAATGCACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30229731 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30229757 C
1 C
30229758 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30230796 original size:26 final size:26
Alignment explanation
Indices: 30230767--30230819 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30230757 GTCCGGTTAT
30230767 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
30230793 CTTAGACTGGGGATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30230819 C
1 C
30230820 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30230950 original size:84 final size:84
Alignment explanation
Indices: 30230801--30230954 Score: 220
Period size: 84 Copynumber: 1.8 Consensus size: 84
30230791 TGCTTAGACT
* * * * * * **
30230801 GGGGATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCGGTCGGTCGGA
1 GGGGATGAAATCCATATGCCTAAGTCAACCCACGAAACGAGCATACAGGCGCTCAGCCGAACGGA
30230866 GAGGCAGAATGCGCAAGCC
66 GAGGCAGAATGCGCAAGCC
30230885 GGGGATGAAATCCATATGCCTAAGTCAACCCACGAAACGAGCATAC-GTGCGCTCAGCCGAACGG
1 GGGGATGAAATCCATATGCCTAAGTCAACCCACGAAACGAGCATACAG-GCGCTCAGCCGAACGG
30230949 AGAGGC
65 AGAGGC
30230955 TGGTCGGAGA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
83 1 0.02
84 60 0.98
ACGTcount: A:0.29, C:0.26, G:0.31, T:0.14
Consensus pattern (84 bp):
GGGGATGAAATCCATATGCCTAAGTCAACCCACGAAACGAGCATACAGGCGCTCAGCCGAACGGA
GAGGCAGAATGCGCAAGCC
Found at i:30231744 original size:157 final size:155
Alignment explanation
Indices: 30231253--30231744 Score: 456
Period size: 157 Copynumber: 3.1 Consensus size: 155
30231243 TGCTTAGAGA
* * * *
30231253 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCTGGCGCTTAGCCGACCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTTAGCAGACCGGA
* * ** *
30231318 GAGGCAGAATGCAGAAGCCAGAGA-CCGACCCGATCCCCCTGTGTGCTATCGATCCTGCTGTCGC
66 GAGGCAGAATGC-GAAGCCAGGGATCAG-CCCGATCCCCCTGCATGCTATCGATCCTGCTGACGC
* * *
30231382 AACCCTCAGTCTGATCCGATCTTAGAC
129 AACCCTCGGTCCGGTCCGATCTTAGAC
* * ** ** *
30231409 TAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAG-AGTTTGGGCACTTAGCCA-ACC
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCA-TGCGGGCGCTTAG-CAGACC
* * * * * *
30231472 GGAGAGGCATAATGTGCAAGTCAGGGATAAGCCCGATCCCCATCTGCTTGCTATCGGTCCTGCT-
63 GGAGAGGCAGAATGCG-AAGCCAGGGATCAGCCCGATCCCC--CTGCATGCTATCGATCCTGCTG
* * * **
30231536 ATGACAACCCTCGATCCGG-CTGGGGCTTAGAC
125 ACG-CAACCCTCGGTCCGGTC-CGATCTTAGAC
* * *
30231568 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCATGCGGGCGCTCAGCAGGCCGG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTTAGCAGACCGG
* * * * * *
30231632 AGAGGCAGAATGCGTAAGCCGGGGATCAGCCTGGTCCACCCTGCATGCTGTCGATCTTGCTGCCG
65 AGAGGCAGAATGCG-AAGCCAGGGATCAGCCCGATCC-CCCTGCATGCTATCGATCCTGCTGACG
*
30231697 CAGCCCTCGGTCCGGTCCGATCTTAGAC
128 CAACCCTCGGTCCGGTCCGATCTTAGAC
30231725 TGGGAATGAACTCCGTATGC
1 T-GGAATGAACTCCGTATGC
30231745 TTAGACTGAG
Statistics
Matches: 261, Mismatches: 59, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
156 3 0.01
157 135 0.52
158 49 0.19
159 73 0.28
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTTAGCAGACCGGA
GAGGCAGAATGCGAAGCCAGGGATCAGCCCGATCCCCCTGCATGCTATCGATCCTGCTGACGCAA
CCCTCGGTCCGGTCCGATCTTAGAC
Found at i:30231747 original size:26 final size:26
Alignment explanation
Indices: 30231718--30231767 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
30231708 CCGGTCCGAT
30231718 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
30231744 CTTAGACTGAGGATGAACTCCGTA
1 CTTAGACTGAGGATGAACTCCGTA
30231768 GGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:30232515 original size:159 final size:159
Alignment explanation
Indices: 30232122--30232527 Score: 417
Period size: 159 Copynumber: 2.6 Consensus size: 159
30232112 AACTCCATAT
* *
30232122 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
30232187 TCGGTCGGAG-GGCAGAATACGCAAGTCGGGGACCGGCCCGATCACCCCCTGTGTGTTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCACCCCCTGCGCGTTATCGATC
* * *
30232251 CTGCTATCGCAACCCTCAGTCTGATCTGA
131 CTGCTACCACAACCCTCAGTCTGAGCTGA
* * ** * * * * *
30232280 TCTTAGAC-TGGGAATGAACTCCGTAAGCCTAAGTTAACCCAAGAAACGAGCGTACGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
30232344 GCTGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCTGATCTCCCTCTGCGCGTTGTCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCACCCCCTGCGCGTTATCGAT
* * *
30232409 CCTGCTGCCACAACCCTCGGT-TCG-GCTGGG
130 CCTGCTACCACAACCCTCAGTCT-GAGCT-GA
* *
30232439 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCT-AT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-
*
30232503 GCCGGTCTGAGAGGCAGAATGCGCA
65 GCCGGTCGGAGAGGCAGAATGCGCA
30232528 GCTGAGGATC
Statistics
Matches: 197, Mismatches: 45, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 65 0.33
159 130 0.66
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCACCCCCTGCGCGTTATCGATC
CTGCTACCACAACCCTCAGTCTGAGCTGA
Found at i:30234282 original size:158 final size:156
Alignment explanation
Indices: 30233976--30234517 Score: 540
Period size: 158 Copynumber: 3.4 Consensus size: 156
30233966 TACTAATACC
* * * *
30233976 GCTACCGATCCTGCTGCCACAACCTTCAGTCCGGCTAGG-GCTTAGACATGGAATGAACTCTGTA
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGGCT-GGATCTTAGACATGGAATGAACTCCGTA
* * * * * *
30234040 TGCCTAAGCCAACCAATGAAACGAGCGTGCGGGTGCTCAACCGATCGGAGAGGTAGAATACGTAA
65 TGCCTAAG-CAACCCATGAAACGAGCGTGCAGGTGCT-AGCCGACCGGAGAGGTAGAATGCGCAA
30234105 ACCGAGGATC-GACCCGGTCCCCCCTGCGT
128 ACCGAGGATCAG-CCCGGTCCCCCCTGCGT
* * *
30234134 GCTATCGATCCTGCTGCCACAACCCTCGGTCCGATCT-GATCTTAGAC-TAGGAAAGAACTCCGT
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCG-GCTGGATCTTAGACAT-GGAATGAACTCCGT
* * * * *
30234197 ATGCCTAAGTCAACCCATGAAACGAGCGTGCTGGTGCTGAGCCGACCAGAAAGGCATAATGCGCA
64 ATGCCTAAG-CAACCCATGAAACGAGCGTGCAGGTGCT-AGCCGACCGGAGAGGTAGAATGCGCA
* * * * *
30234262 AATCGAGTATCAGCCTGGTCCCCCTTTGCAT
127 AACCGAGGATCAGCCCGGTCCCCC-CTGCGT
* * * * * *
30234293 GCTGCCGGTCCCGTTGCCACAACCCTCGGTCCGGCTGGGGT-TTAGACATGGAATGAACTCCCTA
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGGCT-GGATCTTAGACATGGAATGAACTCCGTA
* * * * *
30234357 TGCCTAAGCAAACCCATGAAACGGGCGTGCAGGCGCATAGCCGGCCGGAGAGGTAGAATGCTCTA
65 TGCCTAAGC-AACCCATGAAACGAGCGTGCAGGTGC-TAGCCGACCGGAGAGGTAGAATGCGCAA
*
30234422 GCCGAGGATCAGCCCGGTCCCCCCTGCGT
128 ACCGAGGATCAGCCCGGTCCCCCCTGCGT
* * * * * *
30234451 GCTGCCGATCCTGCTGTCGCAACCCTCGGTCAGATCT-GATCTTAGAC-TGAGAATGAACTCCAT
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCG-GCTGGATCTTAGACATG-GAATGAACTCCGT
30234514 ATGC
64 ATGC
30234518 TTGACTCAGG
Statistics
Matches: 313, Mismatches: 58, Indels: 26
0.79 0.15 0.07
Matches are distributed among these distances:
157 6 0.02
158 177 0.57
159 126 0.40
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTACCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGATCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCAACCCATGAAACGAGCGTGCAGGTGCTAGCCGACCGGAGAGGTAGAATGCGCAAACC
GAGGATCAGCCCGGTCCCCCCTGCGT
Found at i:30235810 original size:26 final size:26
Alignment explanation
Indices: 30235774--30235826 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30235764 CAGGTTCGAT
30235774 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
30235800 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30235826 C
1 C
30235827 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30236182 original size:26 final size:26
Alignment explanation
Indices: 30236130--30236182 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30236120 CAGGTTCGAT
*
30236130 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
30236156 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
30236182 C
1 C
30236183 ATAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:30236208 original size:356 final size:352
Alignment explanation
Indices: 30235104--30236290 Score: 1187
Period size: 353 Copynumber: 3.4 Consensus size: 352
30235094 CCGGTCCGAT
* * * * * *
30235104 CTTAGACTGGGAATGAACTCTGTATGCAGAAGTCAACCCACGAAATGAGTGTGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * **
30235169 CGACCGAAGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCCCTTTCTGCATGCTGTC-A---
66 CGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCC
* *
30235230 -G-TCCCA--CTGCT--ACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
131 CGCTGCCAGTCTGCTCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
* * * * * **
30235289 CCTAAGCGAACCCATGAAAC-AGGCGTGCGAGCACTCAACCGGCCGGAGAGGTAGAATGTACAAG
196 CCTAAGCCAACCCATGAAACGA-GCGTGAG-GCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
* * * * * **
30235353 CTGGGGATCGACTC-GATCCCCCC-TGCGTGCTGTCGATCCTGCTGTCGCAACCCTC-AGTTTGG
259 CTAGGGATCGACCCAG-TCCCCCCATGTG-GCTATCGATCCTGCTGCCGCAACCCTCGA-TCAGG
30235415 -TCTGATCTTAGACTGGGAATGAACTCCGTATG
321 TTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * *
30235447 CTTACACTGAGG-ATGAACTCCGTATGCCTATGTCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 CTTAGACT-AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
30235511 CCGACCGGAGAGGGATAATGCGCAAG-CTGGAGATAAGCCCGATCCTCCTCTGCATGCTGTCAAT
65 CCGACCGAAGAGGCATAATGCGCAAGCCAGG-GATCAGCCCGATCCCCCTCTGCATGCTGTCGAT
* * * * **
30235575 CTCACTGCCGGTTCTGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCC
129 CCCGCTGCCAG-TCTGCT-CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
* * * * *
30235640 TATGCCTAAGCCAATCCATGAAATGGGTGTGCA-GCGCTCAGCCGACCGGAGAGGCAGAATGCGC
192 TATGCCTAAGCCAACCCATGAAACGAGCGTG-AGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
* * * * * * * *
30235704 AAGCTACGGATTGGCCTAGTCCCCCCTACGT-GCTACCAATCCTG-TGCCGCAACCCTCGGTCAG
256 AAGCTAGGGATCGACCCAGTCCCCCC-ATGTGGCTATCGATCCTGCTGCCGCAACCCTCGATCAG
*
30235767 GTTCGATCTTAGACTAGGAATGAACTCCGTATG
320 GTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
30235800 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGATATGAGCGTGCGGGTGCTAAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
30235865 TGACCGAAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGATCCCCCTCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCC
* **
30235930 CGCTGCCAGTCCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTGTA
131 CGCTGCCAGT-CTGCT-CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * * *
30235995 TGCCTAAGCCAACCCACGAAACGAACATGTAGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGCAA
194 TGCCTAAGCCAACCCATGAAACGAGCGTG-AGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAA
* *
30236060 G-TCAGGGATCGACCCAGTCCCCCCATGTGCGCTATCGATCCTGCTACCGTAACCCTCGATCAGG
258 GCT-AGGGATCGACCCAGTCCCCCCATGTG-GCTATCGATCCTGCTGCCGCAACCCTCGATCAGG
* *
30236124 TTCGATCTTAGACTGGGAATGAACTCTGCATG
321 TTCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
30236156 CTTAGAC-ATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * ** * * * *
30236220 -CTAGCCGGAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCCTGCGTGCTGTTGAT
65 CCGA-CCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGAT
*
30236284 CCTGCTG
129 CCCGCTG
30236291 TCGCAACCCT
Statistics
Matches: 685, Mismatches: 128, Indels: 49
0.79 0.15 0.06
Matches are distributed among these distances:
342 3 0.00
343 99 0.14
344 3 0.00
349 3 0.00
352 9 0.01
353 228 0.33
354 105 0.15
355 79 0.12
356 156 0.23
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (352 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCC
CGCTGCCAGTCTGCTCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCATGAAACGAGCGTGAGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCT
AGGGATCGACCCAGTCCCCCCATGTGGCTATCGATCCTGCTGCCGCAACCCTCGATCAGGTTCGA
TCTTAGACTGGGAATGAACTCCGTATG
Found at i:30236287 original size:185 final size:185
Alignment explanation
Indices: 30235970--30236333 Score: 485
Period size: 185 Copynumber: 2.0 Consensus size: 185
30235960 TCTGACTGGG
* * * *
30235970 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACATGTAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACATGCAGGCGCTCAG
* * * *
30236035 CCGGTCGGAGAGGCAAAATGCGCAAGTCAGGGATCGACCCAGTCCCCCCATGTGCGCTATCGATC
66 CCAGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCATGCGCGCTATCGATC
* * *
30236100 CTGCTACCGTAACCCTCGATCAGGTTCGATCTTAGACTGGGAATGAACTCTGCAT
131 CTGCTACCGCAACCCTCGATCAGATCCGATCTTAGACTGGGAATGAACTCTGCAT
* *
30236155 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACATGCAGGCGCTCAG
* * * * * * * * * * *
30236220 CTAGCCGGAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCCTGCGTGCTGTTGATC
66 CCAGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCATGCGCGCTATCGATC
** *
30236285 CTGCTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACT
131 CTGCTACCGCAACCCTCGATCAGATCCGATCTTAGACTGGGAATGAACT
30236334 TCGTATGGCT
Statistics
Matches: 152, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
185 152 1.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACATGCAGGCGCTCAG
CCAGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCATGCGCGCTATCGATC
CTGCTACCGCAACCCTCGATCAGATCCGATCTTAGACTGGGAATGAACTCTGCAT
Found at i:30236673 original size:158 final size:158
Alignment explanation
Indices: 30236156--30236731 Score: 539
Period size: 159 Copynumber: 3.6 Consensus size: 158
30236146 ACTCTGCATG
* * * *
30236156 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAAC
** * * * * * *
30236221 TAGCCGGAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCCTGCGTGCTGTTGATCC
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGATCC
* * * * *
30236286 TGCTGTCGCAACCCTCGATCTGATCCGAT
130 TGCTGCCGCAACCCTCGGTTTGGTCTGAT
* * * * * *** * * *
30236315 CTTAGAC-TGGGAATGAACTTCGTATGGCTAAGTCAACCCACGAAACGAGCGTACATACGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
*** * * * * *
30236379 CCTATC-GAAGAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCGGT
65 CCGGCCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
** ** * * **
30236443 CCCACTGCCATAACCCTCGG-TTCGACTGGGG
128 CCTGCTGCCGCAACCCTCGGTTTGGTCT-GAT
* * * * *
30236474 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCACGAAATGGGCATGTGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAAC
* *
30236539 CGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCCGTCGATCCT
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
30236604 GCTGCCGCAACCCTCGGTTTGGTCTGAT
131 GCTGCCGCAACCCTCGGTTTGGTCTGAT
* * * * * *
30236632 CTTAGAC-TGGAAATAAACTCCATATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTCAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* *
30236696 CCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCG
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCG
30236732 AACGGGTGGT
Statistics
Matches: 326, Mismatches: 83, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 121 0.37
159 200 0.61
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAAC
CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTTTGGTCTGAT
Found at i:30236731 original size:317 final size:318
Alignment explanation
Indices: 30236155--30236732 Score: 791
Period size: 317 Copynumber: 1.8 Consensus size: 318
30236145 AACTCTGCAT
* * *
30236155 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
* * * * * *
30236220 CTAGCCGGAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCCCTGCGTGCTGTTGATC
66 CCAGCCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCCTGCGTGCCGTCGATC
* * * * * *
30236285 CTGCTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGGCTAAGTCA
131 CTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGAAATAAACTCCATATGCCTAAGTCA
* * * * * *
30236350 ACCCACGAAACGAGCGTACATACGTTGAGCCTATCGAAGAGGCATAATGCGCAAGCCGGGGATCG
196 ACCCACGAAACGAGCGTACAGACGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCG
30236415 ACTCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCATAACCCTCGGTTCGACTGGG
261 ACTCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCATAACCCTCGGTTCGACTGGG
* * * * **
30236473 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCACGAAATGGGCATGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
* *
30236538 CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCCGTCGATC
66 CCAGCCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCCTGCGTGCCGTCGATC
* * * *
30236602 CTGCTGCCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGAAATAAACTCCATATGCCTAAGTCA
131 CTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGAAATAAACTCCATATGCCTAAGTCA
* * * * *
30236667 ACCCACGACACGAGCGTGCGGGCGCTCAGCCGACC-AGAGAGGCAGGATGCGCAAGCCGGGGATC
196 ACCCACGAAACGAGCGTACAGACGCTCAGCCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATC
30236731 GA
260 GA
30236733 ACGGGTGGTA
Statistics
Matches: 221, Mismatches: 38, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
316 1 0.00
317 127 0.57
318 93 0.42
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
CCAGCCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCCTGCGTGCCGTCGATC
CTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGAAATAAACTCCATATGCCTAAGTCA
ACCCACGAAACGAGCGTACAGACGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCG
ACTCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCATAACCCTCGGTTCGACTGGG
Found at i:30243246 original size:158 final size:158
Alignment explanation
Indices: 30242911--30243306 Score: 444
Period size: 158 Copynumber: 2.5 Consensus size: 158
30242901 TGCACGCACA
* * * *
30242911 CCGTATGCCTAAGTCAACCTATGAAATGAGCGTGCA-GGTGCTGAGCCAACCAGAGAGGAGTAAT
1 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTG-AGGGTGCTCAGCCGACCAGAGAGGAG-AAT
* * * *
30242975 GCGTAAGACGGGGATTGGTCCGATCCCCCTCTACGTGCTGCCAGTCCCAATGCCACAACCCTCGG
64 GTGCAAGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTGCCAGTCCCAATGCCACAACCCTCGG
* *
30243040 TCCGGCTGGGGCTTAGACATGGAATGAACT
129 TCCGGCTGGAGCTTAGACATGGAATAAACT
* * * *
30243070 CCGTATGCCTAAGCCAACCCACAAAATGAGCGTGAGGGTGCTCAGTCGGCCAGAGAGGTAGAATG
1 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGTGCTCAGCCGACCAGAGAGG-AGAATG
* * * * * *
30243135 TGCAAGCCAGGGATTGGCCCGGTCCCCC-CTGCGTGCTGTC-GATCCTACTGCCACAACCCTCGG
65 TGCAAGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTGCCAG-TCCCAATGCCACAACCCTCGG
* *
30243198 TTCGGTCT-GATCTTAGAC-TGGGAATAAACT
129 TCCGG-CTGGAGCTTAGACAT-GGAATAAACT
* ** *
30243228 CCGTATGCCTAAGTCAACCCACGAAACGAGCGT-ACGGGCACTCAGCCGACCAGAGAGGCAGGAT
1 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGA-GGGTGCTCAGCCGACCAGAGAGG-AGAAT
30243292 GTGCAAGCCGGGGAT
64 GTGCAAGCCGGGGAT
30243307 CGAACGGGTG
Statistics
Matches: 199, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
157 3 0.02
158 118 0.59
159 76 0.38
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGTGCTCAGCCGACCAGAGAGGAGAATGT
GCAAGCCGGGGATTGGCCCGATCCCCCTCTACGTGCTGCCAGTCCCAATGCCACAACCCTCGGTC
CGGCTGGAGCTTAGACATGGAATAAACT
Found at i:30245441 original size:26 final size:26
Alignment explanation
Indices: 30245412--30245464 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30245402 CTGTCACAAC
*
30245412 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30245438 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30245464 C
1 C
30245465 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30245866 original size:26 final size:26
Alignment explanation
Indices: 30245816--30245868 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30245806 CCGATCCGAT
**
30245816 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
30245842 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30245868 C
1 C
30245869 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30246235 original size:26 final size:26
Alignment explanation
Indices: 30246197--30246249 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30246187 CTGGTCCGAT
30246197 CTTAGACTAGGAACGAACTCCATATG
1 CTTAGACTAGGAACGAACTCCATATG
* *
30246223 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAACGAACTCCATATG
30246249 C
1 C
30246250 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCATATG
Found at i:30247588 original size:26 final size:26
Alignment explanation
Indices: 30247559--30247611 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30247549 CCGGTCTGAT
*
30247559 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACACTGTATG
* **
30247585 CTTAGACTGGGGGTGAACACTGTATG
1 CTTAGACTAGGAATGAACACTGTATG
30247611 C
1 C
30247612 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACTGTATG
Found at i:30247759 original size:183 final size:185
Alignment explanation
Indices: 30247422--30247768 Score: 452
Period size: 185 Copynumber: 1.9 Consensus size: 185
30247412 ATAAACTCCC
* * * *
30247422 TATGCCTAAGCCAACCAACGAAATGAGCATGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGC
1 TATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAATCGACCGGAGAGGCAGAATGCGC
* * * * * * *
30247487 AAGCAAGGGATCGGCCTGGTCCCCCCTTGCATGCTGCCGATCTTGCTGTCGCAACCCTCGATCCG
66 AAGCAAGGGATCGACCCGATCCCCCCTTACATACTACCGATCTTGCTGTCGCAACACTCGATCCG
* *
30247552 GTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTGAACACTG
131 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGGTGAACACTG
* * * * *
30247607 TATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAATCGATCGGAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAATCGACCGGAGAGGCAGAATGCGC
*
30247672 AAGCCAA-GGATCGACCCGAT-CCCCC-TACGTACTACCGATCTTGCTG-CTGCAACACTC-AGT
66 AAG-CAAGGGATCGACCCGATCCCCCCTTACATACTACCGATCTTGCTGTC-GCAACACTCGA-T
*
30247732 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
128 CCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
30247769 CTAAGTCAAA
Statistics
Matches: 139, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
182 2 0.01
183 60 0.43
184 5 0.04
185 69 0.50
186 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
TATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAATCGACCGGAGAGGCAGAATGCGC
AAGCAAGGGATCGACCCGATCCCCCCTTACATACTACCGATCTTGCTGTCGCAACACTCGATCCG
GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGGTGAACACTG
Found at i:30248471 original size:159 final size:158
Alignment explanation
Indices: 30248096--30248471 Score: 382
Period size: 158 Copynumber: 2.4 Consensus size: 158
30248086 AACTCCATTT
* * * * * *
30248096 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CACCCAAAACAAGCGTGTGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCA-ACGAAACGAGCGTGCGGGCACTGA
* * * * *
30248160 GCCGATTGAAAAGGCAGAATGCGCAAGTCGGGGACCGACCCGATCCCCCCTGCGTGCTATCGATC
65 GCCGATCGAAAAGGCACAATACACAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTATCGATC
* * *
30248225 CTACTGCCGCAACCCTCGGTCTAGTCTGA
130 CCACTGCCACAACCCTCGGTCTAGGCTGA
* * * * * * *
30248254 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTGA
* * ** * * *
30248318 GCCGGA-CGGAGAGGCACAATACACAAGCCGGGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGG
65 GCC-GATCGAAAAGGCACAATACACAAGCCGGGGACCGACCCGATCCCCC-CTGCGTGCTATCGA
* *
30248382 TCCCGCTGCCACAACCCTCGGTCT-GGCTGGG
128 TCCCACTGCCACAACCCTCGGTCTAGGCT-GA
* * *
30248413 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGC
30248472 GCTCAGTCGA
Statistics
Matches: 172, Mismatches: 40, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.01
158 86 0.50
159 84 0.49
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTGAG
CCGATCGAAAAGGCACAATACACAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTATCGATCC
CACTGCCACAACCCTCGGTCTAGGCTGA
Found at i:30248504 original size:159 final size:157
Alignment explanation
Indices: 30248096--30248527 Score: 429
Period size: 159 Copynumber: 2.7 Consensus size: 157
30248086 AACTCCATTT
* * * * *
30248096 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CACCCAAAACAAGCGTGTGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCA-ACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
30248160 GCCGATTGAAAAGGCAGAATGCGCAAGTCGGGGACCGACCCGATCCCCCCTGCGTGCTATCGATC
65 GCCGA-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATC
* * *
30248225 CTACTGCCGCAACCCTCGGTCTAGTCTGA
129 CCACTGCCACAACCCTCGGTCTAGGCTGA
* * * * * * * * *
30248254 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
30248318 GCCGGACGGAGAGGCACAATACACAAGCCGGGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGGT
65 GCC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGAT
* *
30248383 CCCGCTGCCACAACCCTCGGTCT-GGCTGGG
128 CCCACTGCCACAACCCTCGGTCTAGGCT-GA
* * *
30248413 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
30248478 TCGACCGGAGAGGTAGAATGCGCAAGCAAGGGATCGGCCCGGTCCCCCCT
66 CCGA-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCT
30248528 TGCATGCTGC
Statistics
Matches: 216, Mismatches: 51, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 90 0.42
159 124 0.57
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
CCGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCC
ACTGCCACAACCCTCGGTCTAGGCTGA
Found at i:30248771 original size:183 final size:185
Alignment explanation
Indices: 30248436--30248782 Score: 450
Period size: 185 Copynumber: 1.9 Consensus size: 185
30248426 ATAAACTCCC
* * * * *
30248436 TATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGC
1 TATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAATCGACCAGAGAGGCAGAATGCGC
* * * * * **
30248501 AAGCAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGATCTTGCTGTTGCAACCCTCCATCCG
66 AAGCAAGGGATCGACCCGATCCCCCCTTACATACTACCGATCTTGCTGCCGCAACCCTCCATCCG
** *
30248566 GTTTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTGAACACTG
131 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGGTGAACACTG
* * * *
30248621 TATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAATCGGCCAGAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAATCGACCAGAGAGGCAGAATGCGC
* *
30248686 AAGCCAA-GGATCGACCCGAT-CCCCC-TACGTACTACCGATCTTGCTGCCGCAACCCT-CAGTT
66 AAG-CAAGGGATCGACCCGATCCCCCCTTACATACTACCGATCTTGCTGCCGCAACCCTCCA-TC
*
30248747 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
129 CGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
30248783 CTAAGTCAAC
Statistics
Matches: 138, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
182 2 0.01
183 58 0.42
184 5 0.04
185 70 0.51
186 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
TATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAATCGACCAGAGAGGCAGAATGCGC
AAGCAAGGGATCGACCCGATCCCCCCTTACATACTACCGATCTTGCTGCCGCAACCCTCCATCCG
GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGGTGAACACTG
Found at i:30248895 original size:501 final size:506
Alignment explanation
Indices: 30246854--30249760 Score: 2889
Period size: 501 Copynumber: 5.7 Consensus size: 506
30246844 CTATCGATCC
* * * * * * **
30246854 TGCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACGTGGAATGAACTCTGTA
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCCTA
* * * *
30246919 TGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG-CCAGCCGGAGAGGTAGAATGCACA
66 TGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGTCGA-CCGGAGAGGTAGAATGCGCA
* * * * *
30246983 AGTAGGGGATCGGTCCGGTCCCTCC-TGCATGCTGTCGATCCTACTGCTGGTCTTGCTGCCGTAA
130 AGCAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGATCCT-CTGCT-G-C-T-CTG-C--AA
** * * * *
30247047 CCCTCTGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATCGAATGAACTCC
187 CCCTCCATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCC
* * * * * * *
30247112 ATATGCCTAAGCCAACCCATGAAATGAGTGTGGGGGCGCTCAA-CCGAAAGGAGAGGCAGAATGC
252 GTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAAGCCGACA-GAGAGGCAGAATGC
* * * * * *
30247176 ACAAGTC-AGAGATCGACCCGATCCCCCCTATGTGCTGTTGATCCTGCTGCCGCAACCTTCGGTC
316 GCAAGCCGAG-GATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGTC
* * *
30247240 TGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA-CCACG-AAC-AGCATGCGG
380 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
* * * * * * *
30247302 GCATTGAG-CGG-CCAAGAGGCATAAT-CAGCAAGTCGGGGATCGACCCAGT-CCT-TCT-GG
445 GCACTGAGCCGGACGAAGAGGCATAATAC-GCAAGACGGGGATCGGCCCGGTCCCTCCCTACG
* * * *
30247359 TGCTACTGGTCCCGCTGCCGCAACCCTCGGT-TCGATTGGGGCTTAGACATGGAATAAACTCCCT
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATAAACTCCCT
* * *
30247423 ATGCCTAAGCCAACCAACGAAATGAGCATGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCA
65 ATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGTAGAATGCGCA
* *
30247488 AGCAAGGGATCGGCCTGGTCCCCCCTTGCATGCTGCCGAT-CT-TGCTG-TC-GCAACCCTCGAT
130 AGCAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGATCCTCTGCTGCTCTGCAACCCTCCAT
* * * ** ** * *
30247549 CCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGAC-TGGGGGTGAACACTGTATGCC
195 CCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCC
* * *
30247613 TAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAA-TCGATCGGAGAGGCAGAATGCGCAAGCC
259 TAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAAGCCGA-CAGAGAGGCAGAATGCGCAAGCC
* * * * * * * * *
30247677 AAGGATCGACCCGAT-CCCCCTACGTACTACCGATCTTGCTGCTGCAACACTCAGTCCGGTCCGA
323 GAGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* *
30247741 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCCA-CAAATGAGCGTGCGGGCACTGA
388 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAACGAGCGTGCGGGCACTGA
* * * * * * *
30247805 GCCTGTCGAAGAAGAATAATACGCATGACGGGGATCAGCCTGGTCCCTCCCTACG
452 GCCGGACGAAGAGGCATAATACGCAAGACGGGGATCGGCCCGGTCCCTCCCTACG
** * * *
30247860 TGCTGCTAGTCCCGATGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAAC-CCCGG
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCC-T
* * * * * *
30247924 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCGGAAAGGTATAATGTGCA
65 ATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGTAGAATGCGCA
* * *
30247989 AGCCAGGGATTGACCCGGT-CCCCCTTGCATGCTGCCGATCCTGCTGCTTGTCCTACTACCGCAA
130 AGCAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGATCCT-CTGC-TG--CT-CT---GCAA
*
30248053 CCCT-CAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACATGGAATGAACTC
187 CCCTCCA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTC
* * * * ** *
30248117 CGTATGCCTAAGCCAACACC-CAAAACAAGCGTGTGGGCGCT-TAGCCGATTGAAAAGGCAGAAT
251 CGTATGCCTAAGCCAAC-CCACGAAACGAGCGTGTGGGCACTCAAGCCGACAG-AGAGGCAGAAT
* * * * *
30248180 GCGCAAGTCGGGGACCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGGT
314 GCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGT
* * * *
30248245 CTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTACG
379 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
* * * * * * *
30248310 GGCACTGAGCCGGACGGAGAGGCACAATACACAAGCCGGGGATTGGCCCGATCCC-CCTCTGCG
444 GGCACTGAGCCGGACGAAGAGGCATAATACGCAAGACGGGGATCGGCCCGGTCCCTCC-CTACG
* *
30248373 TGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATAAACTCCCTA
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCCTA
* *
30248438 TGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAA
66 TGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGTAGAATGCGCAA
30248503 GCAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGAT-CT-TGCTG-T-TGCAACCCTCCATC
131 GCAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGATCCTCTGCTGCTCTGCAACCCTCCATC
* ** * ** ** * *
30248564 CGGTTTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGAC-TGGGGGTGAACACTGTATGCCT
196 CAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCT
* * * * *
30248628 AAGTCAACCCACGAAACGAGCGTGTGGGCACTCAATCGGCCAGAGAGGCAGAATGCGCAAGCCAA
260 AAGCCAACCCACGAAACGAGCGTGTGGGCACTCAAGCCGACAGAGAGGCAGAATGCGCAAGCCGA
* * * * *
30248693 GGATCGACCCGAT-CCCCCTACGTACTACCGATCTTGCTGCCGCAACCCTCAGT-TCGGTCCGAT
325 GGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGAT
*
30248756 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAAATGAGCGTGCGGGCACTGAG
389 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG-AAACGAGCGTGCGGGCACTGAG
* * * *
30248820 CCGGTCGAAGAGGAATAATACGCATGACGGGGATCGGCCTGGTCCCTCCCTACG
453 CCGGACGAAGAGGCATAATACGCAAGACGGGGATCGGCCCGGTCCCTCCCTACG
* * * *
30248874 TGCTGCCAGTCCCGATGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAAC-CCCGG
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCC-T
* * * * * * *
30248938 ATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGTCGGCCGGAAAGGTATAATGTGCA
65 ATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGTAGAATGCGCA
* *
30249003 AGCCAGGGATCGACCCGGT-CCCCCTTGCATGCTGCCGATCCTGCTGCTTGTCCTACTACCGCAA
130 AGCAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGATCCT-CTGC-TG--CT-CT---GCAA
*
30249067 CCCT-CAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACATGGAATGAACTC
187 CCCTCCA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTC
* * * ** *
30249131 CGTATGCCTAAGCCAACACC-CAAAACAAGCGTGTGGGCACT-TAGCCGATTGAAAAGGCAGAAT
251 CGTATGCCTAAGCCAAC-CCACGAAACGAGCGTGTGGGCACTCAAGCCGACAG-AGAGGCAGAAT
* * * *
30249194 GCGCAAGTCGGGGA-CTGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGG
314 GCGCAAGCCGAGGATC-GACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGG
* * * *
30249258 TCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTAC
378 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
* * * * * * * *
30249323 GGGCACTAAGCCGGACGGAGAGGCACAATGCGCAAGCCGGGGATTGGCCCGATCCC-CCTCTGCG
443 GGGCACTGAGCCGGACGAAGAGGCATAATACGCAAGACGGGGATCGGCCCGGTCCCTCC-CTACG
* * *
30249387 TGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGTTTAGACATGGAATAAACTCCCTA
1 TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCCTA
* * * * * * * * * *
30249452 TGCCTAAGCCAAGCAACGAAAC-AGGCATGTC-GACGCTCAGTCGATCGAAGAGGCAAAATTCAC
66 TGCCTAAGCCAACCAACGAAACGA-GCGTG-CGGGCACTCAGTCGACCGGAGAGGTAGAATGCGC
* * * * * **
30249515 AAGTC-GGGGATCGGCCCAGTCCCCCC-TACGTGCTGCTGAT-C-CTGCTGC-C-GCAACCCTTG
129 AAG-CAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGATCCTCTGCTGCTCTGCAACCCTCC
* * * * * * * * *
30249574 GTCCGGTTCGATCTTAGATTGGGAATGAACTCTATATACTTAGA-TTGGGGATGAACTTCGTATG
193 ATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATG
* * * * * * * * *
30249638 CCTAAGTCAACCCACGAAATGAGCGTGCGGGTAC-CCAGCCGTCCGGAGAGGCAAAATGCGTAAG
257 CCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAAGCCG-ACAGAGAGGCAGAATGCGCAAG
* * * * *
30249702 CCGTGGATCGACCC-AGTCCCCCCTGCGTGCTGTCAATCCTACTGCCGCAACCCTCGGTC
321 CCGAGGATCGACCCGA-TCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGTC
30249761 CGATCCAATC
Statistics
Matches: 1982, Mismatches: 339, Indels: 166
0.80 0.14 0.07
Matches are distributed among these distances:
493 72 0.04
494 126 0.06
495 7 0.00
496 16 0.01
497 3 0.00
498 28 0.01
499 5 0.00
500 54 0.03
501 551 0.28
502 122 0.06
503 16 0.01
504 4 0.00
505 130 0.07
506 15 0.01
507 4 0.00
508 1 0.00
509 3 0.00
510 6 0.00
511 13 0.01
512 248 0.13
513 523 0.26
514 35 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (506 bp):
TGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCCTA
TGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGTAGAATGCGCAA
GCAAGGGATCGGCCCGGTCCCCCCTTGCATGCTGCCGATCCTCTGCTGCTCTGCAACCCTCCATC
CAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTGTGGGCACTCAAGCCGACAGAGAGGCAGAATGCGCAAGCCGAG
GATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCG
GACGAAGAGGCATAATACGCAAGACGGGGATCGGCCCGGTCCCTCCCTACG
Found at i:30249473 original size:159 final size:157
Alignment explanation
Indices: 30249111--30249474 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 157
30249101 ACTCCATTTG
* * ** *
30249111 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACCCAAAACAAGCGTGTGGGCACTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACA-ACGAAACAAGCGTACGGGCACTAAGC
* * * *
30249176 CGATTGAAAAGGCAGAATGCGCAAGTCGGGGACTGACCCGATCCCCCCTGCGTGCTATCGATCCT
65 CGATCGAAAAGGCACAATGCGCAAGCCGGGGACTGACCCGATCCCCCCTGCGTGCTATCGATCCC
* *
30249241 ACTGCCGCAACCCTCGGTCTAGTCTGAT
130 ACTGCCACAACCCTCGGTCTAGGCTGAT
* * * * * *
30249269 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA-CAACGAAACAAGCGTACGGGCACTAAG
* * * * * *
30249333 CCGGA-CGGAGAGGCACAATGCGCAAGCCGGGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGGT
64 CC-GATCGAAAAGGCACAATGCGCAAGCCGGGGACTGACCCGATCCCCC-CTGCGTGCTATCGAT
* *
30249397 CCCGCTGCCACAACCCTCGGTCT-GGCTGGGGT
127 CCCACTGCCACAACCCTCGGTCTAGGCT--GAT
* *
30249429 -TTAGACATGGAATAAACTCCCTATGCCTAAGCCAAGCAACGAAACA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CAACGAAACA
30249475 GGCATGTCGA
Statistics
Matches: 166, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.01
158 90 0.54
159 72 0.43
160 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAACGAAACAAGCGTACGGGCACTAAGCC
GATCGAAAAGGCACAATGCGCAAGCCGGGGACTGACCCGATCCCCCCTGCGTGCTATCGATCCCA
CTGCCACAACCCTCGGTCTAGGCTGAT
Found at i:30250041 original size:686 final size:685
Alignment explanation
Indices: 30249053--30250352 Score: 1655
Period size: 686 Copynumber: 1.9 Consensus size: 685
30249043 CTGCTGCTTG
* * * *
30249053 TCCTACTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGAC
1 TCCTACTACCGCAACCCTCAGTCCAGTCCAATCATAGACTAGGAATGAACTCCATATGCTTAGAC
* * * * * * * *
30249118 ATGGAATGAACTCCGTATGCCTAAGCCAACACCCAAAACAAGCGTGTGGGCACTTAGCCGATTGA
66 AAGGAATAAACTCCGTATGCCTAAGCCAACACCCAAAACAAGCATATGGGCACTCAACCGAGTCA
* * * * *
30249183 AAAGGCAGAATGCGCAAGTCGGGGACTGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCCG
131 AAAGGCAGAATGCACAAGCCGAGGACTGACCCGATCCCCCCTGCATACTATCGATCCTACTGCCG
* * * *
30249248 CAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAA
196 CAACCCTCGATCCAGTCTCATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
* * * *
30249313 ACGAGTGTACGGGCACTAAGCCGGACGGAGAGGCACAATGCGCAAGCCGGGGATTGGCCCGATCC
261 ACGAGTGTACGGGCACTAAGCCAGACGAAGAGGCACAATGCGCAAGCCGGGGATCGACCCGATCC
* * *
30249378 CCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGTTTAGACATGGAATA
326 CCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAGGGAATA
* * * * *
30249443 AACTCCCTATGCCTAAGCCAAGCAACGAAACAGGCATGTC-GACGCTCAGTCGATCGAAGAGGCA
391 AACTCCCTATGCCTAAGCCAACCAACCAAACAGGCATG-CAGACGCTCAGCCGACCGAAGAGACA
* * * *
30249507 AAATTCACAAGTCGGGGATCGGCCCAGTCCCCCCTACGTGCTGCTGATCCTGCTGCCGCAACCCT
455 AAATGCACAAGTCGGGCATCGGCCCAGTCCCCCCTACGTGCTACGGATCCTGCTGCCGCAACCCT
* * * * * * *
30249572 TGGTCCGGT-TCGATCTTAGATTGGGAATGAACT-CTATATACTTAGATTGGGGATGAACTTCGT
520 CGGTACGATCT-GATCTTAGACTGGGAATGAACTCCT-GATACTTAGACTAGGGATGAACTTCGT
* * *
30249635 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTACCCAGCCGTCCGGAGAGGCAAAATGCGTA
583 ATGCCTAAATCAACCCACAAAACGAGCGTGCGGGTACCCAGCCGTCCGGAGAGGCAAAATGCGTA
30249700 AGCCGTGGATCGACCCAGTCCCCCCTGCGTGCTGTCAA
648 AGCCGTGGATCGACCCAGTCCCCCCTGCGTGCTGTCAA
* * * * **
30249738 TCCTACTGCCGCAACCCTCGGTCC-GATCCAATCATGGACTAGGCATGAACTCTGTATGCTTAGA
1 TCCTACTACCGCAACCCTCAGTCCAG-TCCAATCATAGACTAGGAATGAACTCCATATGCTTAGA
* * *
30249802 CAAGGAATAAACTCTGTATGCCTAAGCC-A-ACCCATGAAACGAGCATATGGGCACTCAACTG-G
65 CAAGGAATAAACTCCGTATGCCTAAGCCAACACCCA--AAACAAGCATATGGGCACTCAACCGAG
* * * * *
30249864 TCAAAGAGGCAGAATGCACAAGCCGAGGA-TCGGCTCGGTCCCCCCCTGCATACTGTCGATCCTG
128 TCAAA-AGGCAGAATGCACAAGCCGAGGACT-GACCCGAT-CCCCCCTGCATACTATCGATCCTA
* * * *
30249928 CTGTCGCAACCCTTGATCCAGTCTCATCTTAGATTGGGAATGAGC-TCTGTATGCCTAAGTCAAC
190 CTGCCGCAACCCTCGATCCAGTCTCATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAAC
* * * * *
30249992 CCACGAAACGAGTGTGCGGGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGAC
254 CCACGAAACGAGTGTACGGGCACTAAGCCAGACGAAGAGGCACAATGCGCAAGCCGGGGATCGAC
* * * * *
30250057 CCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCATAACCCTTGGTCCGGCTGGGGCTTAGATA
319 CCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACA
* * * * * *
30250122 GGGAATCAACTCCCTATGCCTTAGCCAACCCACCAAACAGGCGTGCAGGCGCTCAGCCGACCGGA
384 GGGAATAAACTCCCTATGCCTAAGCCAACCAACCAAACAGGCATGCAGACGCTCAGCCGACCGAA
* * * * *
30250187 GAGACAGAATGCGCAAGTCGGGCATCGGCCCGGTCCCCCTTACGTGCTACGGATCCTGCTGCCGT
449 GAGACAAAATGCACAAGTCGGGCATCGGCCCAGTCCCCCCTACGTGCTACGGATCCTGCTGCCGC
*
30250252 AACCCTCGGTACGATCTGATCTTAGACTGGGAATGAACTCCTGATGCTTAGACTAGGGATGAACT
514 AACCCTCGGTACGATCTGATCTTAGACTGGGAATGAACTCCTGATACTTAGACTAGGGATGAACT
*
30250317 TCGTATGCCTAAATCACCCCACAAAACGAGCGTGCG
579 TCGTATGCCTAAATCAACCCACAAAACGAGCGTGCG
30250353 AGCGCTCAGC
Statistics
Matches: 517, Mismatches: 88, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
683 5 0.01
684 7 0.01
685 124 0.24
686 378 0.73
687 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (685 bp):
TCCTACTACCGCAACCCTCAGTCCAGTCCAATCATAGACTAGGAATGAACTCCATATGCTTAGAC
AAGGAATAAACTCCGTATGCCTAAGCCAACACCCAAAACAAGCATATGGGCACTCAACCGAGTCA
AAAGGCAGAATGCACAAGCCGAGGACTGACCCGATCCCCCCTGCATACTATCGATCCTACTGCCG
CAACCCTCGATCCAGTCTCATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
ACGAGTGTACGGGCACTAAGCCAGACGAAGAGGCACAATGCGCAAGCCGGGGATCGACCCGATCC
CCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAGGGAATA
AACTCCCTATGCCTAAGCCAACCAACCAAACAGGCATGCAGACGCTCAGCCGACCGAAGAGACAA
AATGCACAAGTCGGGCATCGGCCCAGTCCCCCCTACGTGCTACGGATCCTGCTGCCGCAACCCTC
GGTACGATCTGATCTTAGACTGGGAATGAACTCCTGATACTTAGACTAGGGATGAACTTCGTATG
CCTAAATCAACCCACAAAACGAGCGTGCGGGTACCCAGCCGTCCGGAGAGGCAAAATGCGTAAGC
CGTGGATCGACCCAGTCCCCCCTGCGTGCTGTCAA
Found at i:30250098 original size:159 final size:159
Alignment explanation
Indices: 30249867--30250257 Score: 405
Period size: 159 Copynumber: 2.5 Consensus size: 159
30249857 CAACTGGTCA
* * * * * * * *
30249867 AAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCCTGCATACTGTCGATCCTGCTGT
1 AAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGC
* * * * * * ** *
30249932 CGCAACCCTTGATCCAGTCT-CATCTTAGATTGGGAATGAGCTCTGTATGCCTAAGTCAACCCAC
66 CGTAACCCTTGATCC-GGCTGCAGCTTAGATAGGGAATCAACTCCCTATGCCTAAGCCAACCCAC
* * * *
30249996 GAAAC-GAGTGTGCGGGCGCTGAGCC-AGCCG
130 CAAACAG-GCGTGCAGGCGCTCAGCCGA-CCG
* *
30250026 AAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGC
1 AAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGC
* * ** *
30250091 CATAACCCTTGGTCCGGCTGGGGCTTAGATAGGGAATCAACTCCCTATGCCTTAGCCAACCCACC
66 CGTAACCCTTGATCCGGCTGCAGCTTAGATAGGGAATCAACTCCCTATGCCTAAGCCAACCCACC
30250156 AAACAGGCGTGCAGGCGCTCAGCCGACCG
131 AAACAGGCGTGCAGGCGCTCAGCCGACCG
* * * * * *
30250185 GAGAGACAGAATGCGCAAGTCGGGCATCGGCCCGGTCCCCCT-TACGTGCT-ACGGATCCTGCTG
1 AAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGG-TCCTGCTG
30250248 CCGTAACCCT
65 CCGTAACCCT
30250258 CGGTACGATC
Statistics
Matches: 191, Mismatches: 37, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 27 0.14
159 159 0.83
160 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (159 bp):
AAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGC
CGTAACCCTTGATCCGGCTGCAGCTTAGATAGGGAATCAACTCCCTATGCCTAAGCCAACCCACC
AAACAGGCGTGCAGGCGCTCAGCCGACCG
Found at i:30250324 original size:26 final size:26
Alignment explanation
Indices: 30250267--30250316 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30250257 TCGGTACGAT
30250267 CTGAT-CTTAGACTGGGAATGAACTC
1 CTGATGCTTAGACTGGGAATGAACTC
30250292 CTGATGCTTAGACTAGGG-ATGAACT
1 CTGATGCTTAGACT-GGGAATGAACT
30250317 TCGTATGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.22
26 15 0.65
27 3 0.13
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTGATGCTTAGACTGGGAATGAACTC
Found at i:30252905 original size:159 final size:159
Alignment explanation
Indices: 30252742--30253106 Score: 369
Period size: 158 Copynumber: 2.3 Consensus size: 159
30252732 CTGCACACCT
* * ** *
30252742 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGG
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGG
* * * ** * * *** * * *
30252806 TTATGGCAGCGGGA-CTGGTAACACGCAGAGGGGGATCGGGCCAATCCCTGGCTTGCTCTTTATG
66 TTACGACAGCAGGATC-GACAACACGCAG-GGGGGACCAGGCCAATCCCCAACTTGCGCATTATA
* * * *
30252870 CCTCTTCGATCGGCTCAACGCCCGGACGCTC
129 CCTCTCCGACCGACTCAACGCCCGCACGCTC
* * * * * *
30252901 GTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGATCAAACCGAGG
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCGAGG
* * * *
30252964 GTTACGATAGTAGGATCGACAACACGTAGGGGGGACCAGGCCAATCCCCAACTTGCGCATTCTAC
65 GTTACGACAGCAGGATCGACAACACGCAGGGGGGACCAGGCCAATCCCCAACTTGCGCATTATAC
* *
30253029 CTCTCCGACCGACTGAGCGCCCGCACGCTC
130 CTCTCCGACCGACTCAACGCCCGCACGCTC
30253059 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30253107 TACGGAGTTC
Statistics
Matches: 164, Mismatches: 37, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 92 0.56
159 65 0.40
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGG
TTACGACAGCAGGATCGACAACACGCAGGGGGGACCAGGCCAATCCCCAACTTGCGCATTATACC
TCTCCGACCGACTCAACGCCCGCACGCTC
Found at i:30253114 original size:26 final size:26
Alignment explanation
Indices: 30253078--30253130 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30253068 GTTGGCTTAG
30253078 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30253104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30253130 G
1 G
30253131 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30260078 original size:155 final size:156
Alignment explanation
Indices: 30259720--30260218 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 156
30259710 CCTAGTCTAA
* * *
30259720 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGA-TCGAGGGTTGCAACAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGACAGCAGGATCGAC
* * * * *
30259784 AGCACGCAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGACTGGCTGAGCGC
64 AGCACGCAGGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCACTCTGACTGGCTCAACGC
* * *
30259849 CCACACGCCGGTTTTGTGGGTTGGCTTAG
129 CCACACGCC-GTTGTGTGAGTTGACTTAG
** * * ** * * * * * *
30259878 GCATAGGGAGTTGATTCCATGTCTAAG-CCCTAGCCAGACAGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACAGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACTGAGGGTTGCGACAGCAG-GATCGA
*
30259941 CAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCACT-TCGA-TCGGTTCA
63 CAGCACGCAG-GGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCACTCT-GACT-GGCTCA
* *
30260004 ACGCTCGCACG-C-TTGT-TGAGTTGACTTAG
125 ACGCCCACACGCCGTTGTGTGAGTTGACTTAG
*
30260033 GCATTCAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCC-AGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
* * * * ** * * * * *
30260098 GCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGCCT-ACTGAACGC
65 GCACGCAGGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCACTCT-GACTGGCTCAACGC
* * *
30260162 CCGCACGCTCGTT-TCGTGGGTTGGCTTAG
129 CCACACGC-CGTTGT-GTGAGTTGACTTAG
*
30260191 GCATACCGAGTTCATTCCATGTCTAAGA
1 GCATACAGAGTTCATTCCA-GTCTAAGA
30260219 ATAAGTGTTC
Statistics
Matches: 268, Mismatches: 55, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
154 45 0.17
155 65 0.24
156 10 0.04
157 9 0.03
158 88 0.33
159 51 0.19
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCACTCTGACTGGCTCAACGCCC
ACACGCCGTTGTGTGAGTTGACTTAG
Found at i:30260599 original size:26 final size:26
Alignment explanation
Indices: 30260570--30260622 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30260560 GTTGACTCAG
*
30260570 GCATACAAAGTTTATCCCTAATCTAA
1 GCATACAAAGTTCATCCCTAATCTAA
* * *
30260596 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCTAATCTAA
30260622 G
1 G
30260623 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCTAATCTAA
Found at i:30261307 original size:26 final size:25
Alignment explanation
Indices: 30261271--30261349 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
30261261 GTTGACTTAG
30261271 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATGGAGTTCATCCC-AGTCTAA
30261297 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCA-TCCCAGTCTAA
* *
30261323 GCATACGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCA-TCCCAGTCTAA
30261349 G
1 G
30261350 ATCAGATCGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 46 0.92
27 4 0.08
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCAGTCTAA
Found at i:30261826 original size:26 final size:26
Alignment explanation
Indices: 30261797--30261849 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30261787 GTTGGCTTAG
30261797 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30261823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30261849 G
1 G
30261850 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30262217 original size:354 final size:355
Alignment explanation
Indices: 30261614--30262303 Score: 979
Period size: 354 Copynumber: 1.9 Consensus size: 355
30261604 CAGCGCCCGC
* * *
30261614 ACGCTCATTTCATGGGTTGACTTATGCATACAAAGTTCATTCCCAGTCTAAGATCAGATCGGGCT
1 ACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACT
* ** * * *
30261679 GAGGGTTGTGATTGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAGTCCCTGGCTTACGCATT
66 AAGGGTTACGATAGCAGGATCGACAGAAAGCAGGGGGGACCGGGCCAGTCCCTGGCTTACGCATT
* * * *
30261744 CTGCCACTCCGACCGGTTGAGCACCCATATGCTCATTTCACGGGTTGGCTTAGGCATACGGAGTT
131 CTGCCACTCCGACCGGCTGAGCACCCACACGCTCATTTCACGGGTTGGCTGAGGCATACGGAGTT
* * *
30261809 CATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
196 CATTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* *
30261874 CAGCAGGACCAACAGTAGGATCGATAACACGCAGAG-GGGATCAGGCCGAT-CCTCAGCTTGCGC
261 CAGCAGGACCAACAGCAGGATCGATAACACACAGAGAGGGATCAGGCCGATCCCT-AGCTTGCGC
30261937 ATTCTACCTCTCCGACCAGTTGAGTGCCCAT
325 ATTCTACCTCTCCGACCAGTTGAGTGCCCAT
* * * *
30261968 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACT
1 ACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACT
* * * *
30262033 AAGGGTTACGATAGCAGGATCGATATAAAGCAGGGGGTATCGGGCCAGTCCCTGGCTTACGCATT
66 AAGGGTTACGATAGCAGGATCGACAGAAAGCAGGGGGGACCGGGCCAGTCCCTGGCTTACGCATT
* * * * * *
30262098 CTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTGAGGCATACGGAGTT
131 CTGCCACTCCGACCGGCTGAGCACCCACACGCTCATTTCACGGGTTGGCTGAGGCATACGGAGTT
* * *
30262163 TATTCCATGCCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGG
196 CATTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * * * *
30262228 CAGCAGGACCAGCAGCAGGATCGGTAGCACACAGGGAGGGATCGGGTCGATCCCTAGCTTGCGCA
261 CAGCAGGACCAACAGCAGGATCGATAACACACAGAGAGGGATCAGGCCGATCCCTAGCTTGCGCA
*
30262293 TTCTTCCTCTC
326 TTCTACCTCTC
30262304 TGGCCGACTG
Statistics
Matches: 292, Mismatches: 42, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
354 257 0.88
355 32 0.11
356 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (355 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACT
AAGGGTTACGATAGCAGGATCGACAGAAAGCAGGGGGGACCGGGCCAGTCCCTGGCTTACGCATT
CTGCCACTCCGACCGGCTGAGCACCCACACGCTCATTTCACGGGTTGGCTGAGGCATACGGAGTT
CATTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
CAGCAGGACCAACAGCAGGATCGATAACACACAGAGAGGGATCAGGCCGATCCCTAGCTTGCGCA
TTCTACCTCTCCGACCAGTTGAGTGCCCAT
Found at i:30262580 original size:171 final size:171
Alignment explanation
Indices: 30262185--30262586 Score: 440
Period size: 171 Copynumber: 2.4 Consensus size: 171
30262175 AAGCATATGA
* *
30262185 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATC
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAGGATC
* * * * *
30262250 GGTAGCACACAGGGAGGGATCGGGTCGATCCCTAGCTTGCGCATTCTTCCTCTCTGGCCGACTGA
66 AGCAGCACACAGGGAGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCTGACCGACTCA
* *
30262315 GTGCTCGCACGCTCATTTTGTGGGTTGGCTTAGCCATATGG
131 GTGCTCGCACGCTCATTTTGTGGGTTGACTTAGCCATACGG
* ** * ** * * **
30262356 AGTTTATT-CCATGTCTAAGCCCCAG-TCGGACCGATGGTTATGGTAACAGGATCGGCAGTGGGA
1 AGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAGGA
* * *
30262419 TCAGCAGCACATAGAGG-GGGA-CTGGGTCGATCCCT-GACTTGCTCATTAC-GCCTCT-TCGAT
64 TCAGCAGCACACAG-GGAGGGATC-GGGTCGATCCCTAG-CTTGCGCATT-CTGCCTCTCT-GAC
* *
30262479 CGGCTCAGTGCTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGG
124 CGACTCAGTGCTCGCACGCTCATTTTGTGGGTTGACTTAGCCATACGG
* * * *
30262527 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
30262587 CGCAGGGGGA
Statistics
Matches: 184, Mismatches: 38, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
170 8 0.04
171 167 0.91
172 9 0.05
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (171 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAGGATC
AGCAGCACACAGGGAGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCTGACCGACTCA
GTGCTCGCACGCTCATTTTGTGGGTTGACTTAGCCATACGG
Found at i:30263549 original size:26 final size:26
Alignment explanation
Indices: 30263513--30263562 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30263503 GACTTAGGCT
30263513 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
30263539 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
30263563 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:30264041 original size:26 final size:26
Alignment explanation
Indices: 30264011--30264063 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30264001 GTTGGCTTAG
30264011 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30264037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30264063 G
1 G
30264064 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30264436 original size:26 final size:26
Alignment explanation
Indices: 30264387--30264442 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
30264377 TGGGTTGACT
*
30264387 TAAGCATACGGAGTTCATCTCCAGTC
1 TAAGCATACGGAGTTCATCTCCAGTA
30264413 TAAGCATACGGAGTTCAT-TCCCAGTA
1 TAAGCATACGGAGTTCATCT-CCAGTA
30264439 TAAG
1 TAAG
30264443 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCTCCAGTA
Found at i:30264757 original size:158 final size:158
Alignment explanation
Indices: 30264416--30264758 Score: 370
Period size: 158 Copynumber: 2.2 Consensus size: 158
30264406 TCCAGTCTAA
* * * * *
30264416 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTGCGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACA
* * * * * * *
30264481 GCACGCAGGGGGGACCGGGCCAATCCTTGGGTTGTGTATTATGCCTCTCCGATCGACTCAACACC
66 GCACGCAAGGGGGACAGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTCAACACC
**
30264546 CGAACGATCATTTTGTGGGTTGACTTAG
131 CGAACGATCATTTCATGGGTTGACTTAG
* *
30264574 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGA-CTGAGGGTTGCTG-CAGCAGGATCAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGC-GACAGCAGGATCAA
* * * * * * *
30264637 CAGTACGCAAGGGGGACAGGGTCGATCCCCT-GCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
64 CAGCACGCAAGGGGGACAGGGCCAAT-CCCTGGCTTGCGCATTATGCCTCTCCGACCGACTCAAC
* * * * *
30264701 ACCTGCATGCTCATTTCATGGGTTGGCTTAG
128 ACCCGAACGATCATTTCATGGGTTGACTTAG
30264732 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
30264759 TATACGAAGT
Statistics
Matches: 151, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 4 0.03
158 143 0.95
159 4 0.03
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACA
GCACGCAAGGGGGACAGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTCAACACC
CGAACGATCATTTCATGGGTTGACTTAG
Found at i:30264764 original size:26 final size:26
Alignment explanation
Indices: 30264734--30264784 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30264724 TGGCTTAGGC
*
30264734 ATACGGAGTTCATTCC-ATGTCTAAGT
1 ATACGAAGTTCATTCCTA-GTCTAAGT
30264760 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCTAGTCTAAG
30264785 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGAAGTTCATTCCTAGTCTAAGT
Found at i:30265729 original size:26 final size:26
Alignment explanation
Indices: 30265692--30265744 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30265682 GTTGATTTAG
30265692 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
30265718 GCATATCG-AGTTCATTCCCAGTCTAA
1 GCATA-CGAAGTTCATCCCCAGTCTAA
30265744 G
1 G
30265745 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30266196 original size:158 final size:158
Alignment explanation
Indices: 30265718--30266219 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 158
30265708 CCCAGTCTAA
* * *
30265718 GCATATCG-AGTTCATTCCCA-GTCTAAGATCGGATCGAAACGAGGGTTACGGCAGCAGGATCGA
1 GCATA-CGAAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
30265781 CAGCACGTAGGGGGGACTGGGA-TAATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAG-
64 CAGCACGCAGGGGGGA-TCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* *
30265844 AGCCCGCACACCCGTTTCATGGGTTGGCTTAG
128 A-CCCGCGCACTCGTTTCATGGGTTGGCTTAG
* * * ** * * * * * *
30265876 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCAGACTGAGGGTTGTGGCAACGGGACCGAC
1 GCATACGAAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGATCGAC
** * * * ** * * * * *
30265940 AGCACGCAAAAGGGGACCGGGCCGATCCTTGACTTGCGCATTATGCCTCTCCGATTGGCTCAGCG
65 AGCACGC-AGGGGGGATCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
* * ** *
30266005 CTCGAGCACTCGTTTCACAGGTTGACTTAG
129 CCCGCGCACTCGTTTCATGGGTTGGCTTAG
* *
30266035 GCATACGAAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
30266099 AGCACGCAGGGGGGATCGGACTGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGTTGAGCAC
65 AGCACGCAGGGGGGATCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
*
30266164 CCGCGCGCTCGTTTCATGGGTTGGCTTAG
130 CCGCGCACTCGTTTCATGGGTTGGCTTAG
*
30266193 GCATACGAAGTTTATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
30266220 CATACTGAGT
Statistics
Matches: 262, Mismatches: 73, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
157 9 0.03
158 137 0.52
159 112 0.43
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
CGCGCACTCGTTTCATGGGTTGGCTTAG
Found at i:30266425 original size:26 final size:26
Alignment explanation
Indices: 30266389--30266441 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30266379 GTTGACTTAG
30266389 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30266415 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30266441 G
1 G
30266442 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30266856 original size:119 final size:119
Alignment explanation
Indices: 30266645--30266884 Score: 435
Period size: 119 Copynumber: 2.0 Consensus size: 119
30266635 CCCGAACTTG
30266645 CGCATTATGCCTCTCCGGCTGACTCAGCGCCCGAACACACGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATTATGCCTCTCCGGCTGACTCAGCGCCCGAACACACGTTTCGTGGGTTGACTTAGGCATAC
30266710 AGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTACGATAGCAGGAT
66 AGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTACGATAGCAGGAT
*
30266764 CGCATTATGCCTCTCCGGCTGACTCAGCGCCCGAACGCACGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATTATGCCTCTCCGGCTGACTCAGCGCCCGAACACACGTTTCGTGGGTTGACTTAGGCATAC
* * * *
30266829 GGAGTTCATTCTCAGTCTAAGATCGGATTGGATCGAGGGTTACGGTAGCAGGAT
66 AGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTACGATAGCAGGAT
30266883 CG
1 CG
30266885 ACAGTACCCG
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 116 1.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (119 bp):
CGCATTATGCCTCTCCGGCTGACTCAGCGCCCGAACACACGTTTCGTGGGTTGACTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTACGATAGCAGGAT
Found at i:30266978 original size:26 final size:26
Alignment explanation
Indices: 30266928--30266980 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30266918 GTTGGCTTAG
*
30266928 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
30266954 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
30266980 G
1 G
30266981 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:30267498 original size:159 final size:160
Alignment explanation
Indices: 30267171--30267658 Score: 373
Period size: 159 Copynumber: 3.1 Consensus size: 160
30267161 AAGCGTATGA
* * * ** * * * * *
30267171 AGTTCATTCCCA-GTCTAAGATCGGACTGGACCTAGGATTTCGGCAGCAGGATCGACAACATGCA
1 AGTTCATTCCCATATCTAAGACCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * *
30267235 GGG-GGGA-CAGGGCCGATCCCC-GACTTACGCATTCTACCTCTCTGGC---C----CGCCCACA
66 GGGAGGGATC-GGGCCGATCCCCAG-CTTACACATTATGCCTCTCCGGCTGACTAAGCGCCCGCA
* * * *
30267290 CGCCCGTTTCATGGGTTGGCTTCGGCATAGGG
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * *
30267322 AGTTCATT-CCATGTCTAAGCCCCA-ATCGGACCAAGGGTTGTGGCAGCGGGATCGACAGCACGC
1 AGTTCATTCCCATATCTAAG-ACCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGC
** * * * * * * * * *
30267385 AGAGG-GGGATCGGGTTGATCCTCGGCTTGCGCATTATGCCTCTCCAG-TCGGCTCAGTGCCCGT
65 AG-GGAGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGGCT-GACTAAGCGCCCGC
*
30267448 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
128 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
30267481 AGTTCATTCCCA-ATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGTA
1 AGTTCATTCCCATATCTAAGACCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* *
30267545 GGGAGGGATCGGGCCGATCCCCAGCTTACACATTCTGCCTCTCCGGCTGACTAAGCGCCTGCACA
66 GGGAGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGGCTGACTAAGCGCCCGCAC-
* *
30267610 G-TCATTTCGTGGGTTGGCTTAGGCATATGG
130 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
*
30267640 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCATATCTAAG
30267659 CATACGGAGT
Statistics
Matches: 262, Mismatches: 56, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
150 3 0.01
151 47 0.18
152 33 0.13
153 2 0.01
155 1 0.00
158 7 0.03
159 164 0.63
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
AGTTCATTCCCATATCTAAGACCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GGGAGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGGCTGACTAAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:30267668 original size:26 final size:26
Alignment explanation
Indices: 30267632--30267684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30267622 GTTGGCTTAG
* *
30267632 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCAGTCCTA-GTCTAA
30267658 GCATACGGAGTTCAGTCCTAGTCTAA
1 GCATACGGAGTTCAGTCCTAGTCTAA
30267684 G
1 G
30267685 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCTAGTCTAA
Found at i:30267878 original size:26 final size:26
Alignment explanation
Indices: 30267841--30267893 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30267831 GTTGACTTCG
30267841 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
30267867 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
30267893 G
1 G
30267894 ATCTAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30268063 original size:26 final size:26
Alignment explanation
Indices: 30268025--30268077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30268015 GTTGGCTTAG
30268025 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30268051 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30268077 G
1 G
30268078 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30269093 original size:26 final size:26
Alignment explanation
Indices: 30269057--30269109 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30269047 GTTAGCTTAG
30269057 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30269083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30269109 G
1 G
30269110 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30269839 original size:27 final size:26
Alignment explanation
Indices: 30269779--30269831 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30269769 GTTGACTTAG
30269779 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30269805 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30269831 G
1 G
30269832 ATCGACGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30270152 original size:26 final size:26
Alignment explanation
Indices: 30270118--30270169 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30270108 TTGACTTAGA
30270118 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
30270144 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
30270170 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:30270496 original size:26 final size:26
Alignment explanation
Indices: 30270460--30270512 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30270450 GTTGGCTTAG
30270460 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
30270486 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
30270512 G
1 G
30270513 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:30271717 original size:26 final size:26
Alignment explanation
Indices: 30271681--30271733 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30271671 GTTGGCTTAG
30271681 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
30271707 GCATACGGAGTTCGTTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30271733 G
1 G
30271734 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.