Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 326 of 402
Found at i:30272092 original size:159 final size:157
Alignment explanation
Indices: 30271707--30272208 Score: 426
Period size: 158 Copynumber: 3.2 Consensus size: 157
30271697 CCCAGTCTAA
* * * * * *
30271707 GCATACGGAGTTCGTTCC-TAGTCTAAGATCGGATC-GAAACAAGGGTTACGGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGTAGGATCGA
* * * * * * *
30271770 CAGCATGCAGGGGGGACCTGGTCGATCCCCGGCTTGTGCATTCTGCCTCTACGGCCGGTTGGGCA
64 CAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTACGGCCGGCTGAGCG
* * *
30271835 CCCG-CACGTTCGTTTCGTGGGTTGGCTTAG
129 CCCGACAC-TT-GTTTCATGGTTTGACTTAG
* * ** * * *
30271865 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGT-GAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGTAG-GATCGA
* ** * *
30271928 CAGCACGCAGAGGGGTACCGGGTCGATCCCTGGCTTGTGTGTTATGCCTCTCCGGCCGGCTCAGC
64 CAGCACGCAG-GGGGGACCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTACGGCCGGCTGAGC
30271993 GCCCGAACACTTGTTTCATGGTTTGACTTAG
128 GCCCG-ACACTTGTTTCATGGTTTGACTTAG
* * * *
30272024 GCATACTGAGTTCATTCC-TAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGTAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGAC
*** * * * * * * *
30272088 AGCACATTGGGGGGACTGGGGCGATCCTTGACTTGTGCATTTTGCCTCTTCGACCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTACGGCCGGCTGAGCGC
* ** *
30272153 CCGCACGCTCATTTCATAGGTTGGA-TTAG
130 CCG-ACACTTGTTTCAT-GGTTTGACTTAG
30272182 GCATAC-GACGTTCATTCCATGTCTAAG
1 GCATACGGA-GTTCATTCCATGTCTAAG
30272209 CATACGGAGT
Statistics
Matches: 273, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 135 0.49
159 125 0.46
160 5 0.02
161 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTACGGCCGGCTGAGCGCC
CGACACTTGTTTCATGGTTTGACTTAG
Found at i:30272232 original size:26 final size:26
Alignment explanation
Indices: 30272182--30272234 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
30272172 GTTGGATTAG
*
30272182 GCATACGACGTTCATTCCATGTCTAA
1 GCATACGACGTTCATTCCATATCTAA
30272208 GCATACGGA-GTTCATTCCCA-ATCTAA
1 GCATAC-GACGTTCATT-CCATATCTAA
30272234 G
1 G
30272235 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGACGTTCATTCCATATCTAA
Found at i:30272397 original size:513 final size:495
Alignment explanation
Indices: 30271142--30272749 Score: 1753
Period size: 513 Copynumber: 3.2 Consensus size: 495
30271132 CCTCTCTGGT
* * *
30271142 CGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCA-ATCT
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCAT-TCCATGTCT
* * * * * * * *
30271206 AAGCATACGGAGTTCATTCCTAGTCAAAGATT-GAACTG-GACTGAGGTTTGCGACAGCAGGATC
64 AAGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCGAAAC-AAGGGTTACGGCAGCAGGATC
* * *
30271269 GACAGCACGCAGGGGGGACCGGGTCGAT-CCTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAG
127 GACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* *
30271333 TGCCCGCACGCTCGTTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
192 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
* * * * * * * *
30271398 TCGGACCAAGGGTTGTGGCAACGG-GACTGACAGCACACAGAGGAGGATCGGGCCGATCCCCGGC
257 CCGGACCGAGGGTTGTGGC-A-GGAGACCGGCAGCACGCAGAGG-GGACCGGGTCGATCCCTGGC
* * *
30271462 TTGCT-CATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTCCGTGGGTTGACTTAAGC
319 TTG-TGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGC
* * * ** * * * *
30271526 AAACGGAGTTTATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGATAGTAGGATCGACAGC
383 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-TAGTAGGATCGATAGC
* * * **
30271591 ACGCA-AGGGGATCGGGCTGATCCTCGACTTATGTATTCTACCT-TTCTGGT
447 AC-TAGGGGGGATCGGGC-GATCCTCGACTTGTGTATTCTACCTCTTC-GAC
* * *
30271641 CGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCT
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCAT-TCCATGTCT
* * ** *
30271705 AAGCATACGGAGTTCGTTCCTAGTCTAAGATCGGATCGAAACAAGGGTTACGGCAGCAGGATCGA
64 AAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGAAACAAGGGTTACGGCAGCAGGATCGA
* * * * * * * *
30271770 CAGCATGCAGGGGGGACCTGGTCGATCCCCGGCTTGTGCATTCTGCCTCTACGGCCGGTTGGGCA
129 CAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
30271835 CCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
194 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
*
30271900 AGACCGAGGGTTGTGGCAGTGAGACCGGCAGCACGCAGAGGGGTACCGGGTCGATCCCTGGCTTG
259 GGACCGAGGGTTGTGGCAG-GAGACCGGCAGCACGCAGAGGGG-ACCGGGTCGATCCCTGGCTTG
** * * * * * * * *
30271965 TGTGTTATGCCTCTCCGGCCGGCTCAGCGCCCGAACACTTGTTTCATGGTTTGACTTAGGCATAC
322 TGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATAC
* *
30272030 TGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGTAGGATCGATAGCACAT
387 AGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GTAGTAGGATCGATAGCAC-T
* * * * * *
30272095 TGGGGGGACTGGGGCGATCCTTGACTTGTGCATTTTGCCTCTTCGAC
450 AGGGGGGA-TCGGGCGATCCTCGACTTGTGTATTCTACCTCTTCGAC
* * * *
30272142 CGGCTGAGCGCCCGCACGCTCATTTCATAGGTTGGATTAGGCATACGACGTTCATTCCATGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA-GTTCATTCCATGTCTA
* * *
30272207 AGCATACGGAGTTCATTCCCAATCTAAGATTAGACC-AGATCGAGGGTTGCAACAGCAAGACCAG
65 AGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGA-AACAAGGGTT-----A-C--G----G
* * *
30272271 CAGCAGGATCGACAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCG
117 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * *
30272336 GTCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTCGCTTAGGCATAGGGAGTTTATTCCATGTC
182 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * * *
30272401 TAAGCCGTAGCCGGACTGAGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAGCGGGACAGGGTCT
247 TAAGCCCTAGCCGGACCGAGGGTTGTGGCAGGA-GACCGGCAGCACGCAGAG-GGGACCGGGTCG
* * * * *
30272466 AGCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAACGCCTGCATGCTCGTTTCGTGGGTTG
310 ATCCCTGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTG
* * * * *
30272531 ACATATGCATACAGAGTTCATTCCCAGTCTAAGATCGG-CTCAGACCGAGGGTTACGGTGGAAGG
375 ACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC-CAGACCGAGGGTTGC-GTAGTAGG
* * * * *
30272595 ATCGATAGCACGTAGGGGGGATCGGGCCATCCCCAACTTGCGTATTCTACCTCTCCGAC
438 ATCGATAGCAC-TAGGGGGGATCGGGCGATCCTCGACTTGTGTATTCTACCTCTTCGAC
* *
30272654 CGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTA
30272719 AGCATACGGAGTTCATTCCCAGTCTAAGATT
65 AGCATACGGAGTTCATTCCCAGTCTAAGATT
30272750 TTGAGCCACG
Statistics
Matches: 924, Mismatches: 155, Indels: 47
0.82 0.14 0.04
Matches are distributed among these distances:
498 1 0.00
499 137 0.15
500 248 0.27
501 116 0.13
502 8 0.01
506 1 0.00
507 1 0.00
509 1 0.00
512 116 0.13
513 292 0.32
514 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (495 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGAAACAAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
ACCGAGGGTTGTGGCAGGAGACCGGCAGCACGCAGAGGGGACCGGGTCGATCCCTGGCTTGTGCA
TTATGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAG
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGTAGTAGGATCGATAGCACTAGGGGG
GATCGGGCGATCCTCGACTTGTGTATTCTACCTCTTCGAC
Found at i:30272698 original size:157 final size:155
Alignment explanation
Indices: 30272275--30272721 Score: 441
Period size: 159 Copynumber: 2.8 Consensus size: 155
30272265 GACCAGCAGC
*
30272275 AGGATCGACAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCG
1 AGGATCGACAGCACGCAGGGGGGA-CGGGCC-ATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCG
* * * * * *
30272340 ACTGAGCGCCCGCACGCTCGTTTTGTGGGTTCGCTTAGGCATAGGGAGTTTATTCCATGTCTAAG
64 GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * ** *
30272405 CCGTAGCCGGACTGAGGGTTGTGGTAGC
129 CCG-AGCCAGACCGAGGGTTACGGTAGA
* * * * * * * * *
30272433 AGGACCGGCAGCACGCAGAGCGGGACAGGGTCTAGCCCTGGCTTGCGCATTATGCCTCTTCGGTC
1 AGGATCGACAGCACGCAG-GGGGGAC-GGG-CCATCCCCGGCTTGCGTATTCTGCCTCTCCGGTC
* * * * * *
30272498 GGCTCAA-CGCCTGCATGCTCGTTTCGTGGGTTGACATATGCATACAGAGTTCATTCCCA-GTCT
63 GGCT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
* *
30272561 AAGATCG-GCTCAGACCGAGGGTTACGGTGGA
126 AAG-CCGAGC-CAGACCGAGGGTTACGGTAGA
* * ** * **
30272592 AGGATCGATAGCACGTAGGGGGGATCGGGCCATCCCCAACTTGCGTATTCTACCTCTCCGACCGG
1 AGGATCGACAGCACGCAGGGGGGA-CGGGCCATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGG
*
30272657 CTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
65 CTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
30272722 ATACGGAGTT
Statistics
Matches: 226, Mismatches: 53, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
156 5 0.02
157 75 0.33
158 26 0.12
159 113 0.50
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (155 bp):
AGGATCGACAGCACGCAGGGGGGACGGGCCATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGC
TAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
GAGCCAGACCGAGGGTTACGGTAGA
Found at i:30272730 original size:26 final size:26
Alignment explanation
Indices: 30272694--30272746 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30272684 GTTGGCTTAG
*
30272694 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30272720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30272746 G
1 G
30272747 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30273846 original size:158 final size:156
Alignment explanation
Indices: 30273462--30273945 Score: 465
Period size: 158 Copynumber: 3.0 Consensus size: 156
30273452 TTCTTTCCCA
* * *
30273462 GTCTAAGATCACACTGGACCGAGGGTTACGACAGTAGGATCGGCAGCACGCAGGGGGACCGAGCC
1 GTCTAAGATCACAC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGACCGAGCC
* * * ** * * * *
30273527 GATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCTACCACATGCCCATTTCATGGGTT
65 GATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTT
* * *
30273592 GGCTTAGGCATAGGGATTTCATTCCAT
130 GACTTAGGCATACGGAGTTCATTCCAT
* * * * * *
30273619 GTCT--GAACCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGATCGA
1 GTCTAAGATCACA--CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC--AGGGGGACCGA
* * * *
30273682 GTCGATCCCC-AGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCATG
62 GCCGATCCCCGA-CTTGCGCATTCTACCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATG
30273746 GGTTGACTTAGGCATACGGAGTTCATTCCCA-
126 GGTTGACTTAGGCATACGGAGTTCATT-CCAT
** * * * *
30273777 GTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGAACCGGGC
1 GTCTAAGATCACA-CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGG-ACCGAGC
* * * * * * *
30273842 CGATCCCCGCCTTGCACATTCTACCTTTCCGACCGGCTGAACACCCGCACGCACGCTCGTTTCGT
64 CGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCT---CA-GCGCCCGCACGCTCGTTTCAT
30273907 GGGTT-AGCTTAGGCATACGGAGTTCATTCCAT
125 GGGTTGA-CTTAGGCATACGGAGTTCATTCCAT
30273939 GTCTAAG
1 GTCTAAG
30273946 CATACGGAGT
Statistics
Matches: 263, Mismatches: 48, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
155 5 0.02
156 30 0.11
157 12 0.05
158 122 0.46
159 34 0.13
160 4 0.02
161 6 0.02
162 50 0.19
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (156 bp):
GTCTAAGATCACACGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGACCGAGCCG
ATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCAT
Found at i:30273955 original size:26 final size:26
Alignment explanation
Indices: 30273919--30273971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30273909 GTTAGCTTAG
*
30273919 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
*
30273945 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
30273971 G
1 G
30273972 ATCGGCCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:30274841 original size:26 final size:26
Alignment explanation
Indices: 30274812--30274864 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30274802 GTTGGCTTAG
*
30274812 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30274838 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30274864 G
1 G
30274865 ATTTGCAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30274966 original size:11 final size:11
Alignment explanation
Indices: 30274934--30274959 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30274924 CCCAGGGCAC
30274934 CATCACCGGAG
1 CATCACCGGAG
30274945 CATCACCGGAG
1 CATCACCGGAG
30274956 CATC
1 CATC
30274960 GTCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:30275819 original size:21 final size:21
Alignment explanation
Indices: 30275793--30275834 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
30275783 CGAGATCGAT
*
30275793 AGCACATAGAGGGGGACCGAC
1 AGCACACAGAGGGGGACCGAC
30275814 AGCACACAGAGGGGGACCGAC
1 AGCACACAGAGGGGGACCGAC
30275835 CCGATCCCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.38, T:0.02
Consensus pattern (21 bp):
AGCACACAGAGGGGGACCGAC
Found at i:30276280 original size:26 final size:26
Alignment explanation
Indices: 30276250--30276303 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
30276240 GGTTGACTTC
30276250 AGCATACAGAGTTCATCCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
* *
30276276 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
30276302 AG
1 AG
30276304 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
AGCATACAGAGTTCATCCCCAGTCTA
Found at i:30276763 original size:26 final size:26
Alignment explanation
Indices: 30276727--30276779 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30276717 GTTGGCTTAG
30276727 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30276753 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30276779 G
1 G
30276780 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30277432 original size:26 final size:26
Alignment explanation
Indices: 30277403--30277455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30277393 GTTGACTTAG
30277403 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
30277429 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
30277455 G
1 G
30277456 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:30277737 original size:158 final size:158
Alignment explanation
Indices: 30277429--30277779 Score: 404
Period size: 158 Copynumber: 2.2 Consensus size: 158
30277419 CCCAGTCTAA
* **
30277429 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGCCTGAGGGTTGCAGGTAGCAGGATCGGT
1 GCATA-AGAGTTCATTCCCAGTCTAAGATCAGACCAGCCTGAGGGTTGCAGGTAGCAGGATCGAC
* * **
30277494 AGCACGCAAGAGGGACCAGGTCGATCCCTGGCTTGCGCATTCTACCTCTTCGGCTGACTCAGTGC
65 AGCACGCAAGAGGGACCAGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGCTGACTCAGCAC
* * * *
30277559 CCGTACGCTCGTTTCGTAGGTTGACTTAG
130 CCGCACACTCATTTCATAGGTTGACTTAG
* *
30277588 GCATAAGTAGTTCATTCCCAGTCTAAGATCAGATCAGACC-GTA-GGTTGCA-GTAGTAGGATCG
1 GCATAAG-AGTTCATTCCCAGTCTAAGATCAGACCAG-CCTG-AGGGTTGCAGGTAGCAGGATCG
* * * * * * * *
30277650 ACAGCACGCAGGGGGGACCGGGTTGGTCCCTGACTTGCGGATTCTGCCTCTCCGG-TCGACTGAG
63 ACAGCACGCAAGAGGGACCAGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGCT-GACTCAG
*
30277714 CACCGGCACACTCATTTCATAGGTTGACTTAG
127 CACCCGCACACTCATTTCATAGGTTGACTTAG
* *
30277746 GCATACGAAGTTCATTCCTAGTCTAAGATCAGAC
1 GCATAAG-AGTTCATTCCCAGTCTAAGATCAGAC
30277780 TGGACCAAGG
Statistics
Matches: 162, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
157 1 0.01
158 118 0.73
159 40 0.25
160 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (158 bp):
GCATAAGAGTTCATTCCCAGTCTAAGATCAGACCAGCCTGAGGGTTGCAGGTAGCAGGATCGACA
GCACGCAAGAGGGACCAGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGCTGACTCAGCACC
CGCACACTCATTTCATAGGTTGACTTAG
Found at i:30278574 original size:158 final size:159
Alignment explanation
Indices: 30278156--30278606 Score: 486
Period size: 159 Copynumber: 2.8 Consensus size: 159
30278146 AATTGGATCG
* * * *
30278156 AGGGTTGCGATAGTAGGATCGAT-GCCACACAGGGGGGATCGGGCTGATTCCCGACTTACGCATT
1 AGGGTTGTGATAGTAGGATCGATAG-CACACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
* * * * * *
30278220 CTACCTCTTTGATCGGCTGAGCGCCCGTA-TGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
65 CTGCCTCTTCGGTCGGCTGAGCGCCCGCACT-CTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* * *
30278284 TCATT-CCATGTCTAAGCCCCAGCCAGATCA
129 TCATTCCCATGTCAAAGCCACAGCCAGACCA
* * * ** * *
30278314 AGGGTTGTGGTAGCAGGA-CTGACAGCACGTAGAGGGGGTTCGGGCCGATCCTC-AGCTTGCAG-
1 AGGGTTGTGATAGTAGGATC-GATAGCACACAG-GGGGGATCGGGCCGATCCCCGA-CTTGC-GC
* * * * * *
30278376 ATTATGCCTCTTCGGTCGGCTCAGCGCCAGCACGCTCATTTCGTGGGTTGACTTATGCATACGGA
62 ATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACTCTCATTTCGTGGGTTGGCTTAGGCATACGGA
* * *
30278441 GTTTATTCCCA-GTCAAAGATCACA-TCAGACCA
127 GTTCATTCCCATGTCAAAG-CCACAGCCAGACCA
* *
30278473 AGGGTTGTGACAGTAGGATCGATAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTC
1 AGGGTTGTGATAGTAGGATCGATAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTC
* *
30278538 TGCCTCTCCGGTCTGCTGAGCGCCCGCACTCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
66 TGCCTCTTCGGTCGGCTGAGCGCCCGCACTCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
30278603 ATTC
131 ATTC
30278607 AATGTCTAAG
Statistics
Matches: 235, Mismatches: 47, Indels: 22
0.77 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 109 0.46
159 116 0.49
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
AGGGTTGTGATAGTAGGATCGATAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTC
TGCCTCTTCGGTCGGCTGAGCGCCCGCACTCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCCATGTCAAAGCCACAGCCAGACCA
Found at i:30278626 original size:26 final size:25
Alignment explanation
Indices: 30278590--30278640 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
30278580 GTTGGCTTAG
30278590 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAA-GTCTAA
*
30278616 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
30278641 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:30279342 original size:26 final size:26
Alignment explanation
Indices: 30279312--30279364 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30279302 GTTGACTTAG
*
30279312 GCATACAAAGTTCGTCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
30279338 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
30279364 G
1 G
30279365 ATCGGACCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:30279760 original size:158 final size:156
Alignment explanation
Indices: 30279338--30279924 Score: 499
Period size: 158 Copynumber: 3.7 Consensus size: 156
30279328 CCCAGTCTAA
* * * **** *
30279338 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCACCCCGAGGGTTGCGATAGCAGGATCTGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGAGGGTTGCGATAGCAGGATCGGCA
* * * * * * *
30279403 GCACGCAAGAAGGACCGGGCCAATCCCTAGCTTGCGCATTCTGCCTCTTCGGACGACTCAGCGCC
66 GCACG-AAGAGGGACCGGGACAATCCCCAGCTTGCGCATTCTGCCTCAT-GGTCGGCTGAGCGCC
*
30279468 TGTACGCTTGTTTCGTAGGTTGACTTAG
129 TGCACGCTTGTTTCGTAGGTTGACTTAG
*
30279496 GCATACGGAGTTCATTCCTAGTCTAAGATTGGA-TCGGACC-ACGGGATGC-AGTAGCAGGATCG
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACT-GGACCGA-GGGTTGCGA-TAGCAGGATCG
* * * * *
30279558 ACAGCAC-ACATGAGGGACCGGGTCAATCCCCGGCTTACGCATTCTACCTCGATGGTCGGCTGAG
63 GCAGCACGA-A-GAGGGACCGGGACAATCCCCAGCTTGCGCATTCTGCCTC-ATGGTCGGCTGAG
* *
30279622 CGCCCGCACGCTTGTTTCATAGGTTGACTTAG
125 CGCCTGCACGCTTGTTTCGTAGGTTGACTTAG
*
30279654 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGAGGGTTCCGATAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGAGGGTTGCGATAGCAGGATCGGCA
* * ** * *
30279719 GCACGAAGGGGGGA-CTGGACAGATCCCCAGCTTGCATATTCTGCCTC-TCCGGTGGGCTGAGCA
66 GCACGAA-GAGGGACCGGGACA-ATCCCCAGCTTGCGCATTCTGCCTCAT--GGTCGGCTGAGCG
* * * *
30279782 CCTGCACGCTCGTTTCGTGGGTTGGCTTAA
127 CCTGCACGCTTGTTTCGTAGGTTGACTTAG
** * *** * * ** *
30279812 TTATACGGAGTTTATTCC-ATGTCTAAGA-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGG
1 GCATACGGAGTTCATTCCTA-GTCTAAGATTGGA-CTGGACCGAGGGTTGCGATAGCAGGATCGG
* * * * *
30279875 CAGCCCGCAGAGGGGGACCGGG-CTGATCCTCAGCTTGCGCATTATGCCTC
64 CAGCACG-A-AGAGGGACCGGGAC-AATCCCCAGCTTGCGCATTCTGCCTC
30279925 TCAGGTCGGC
Statistics
Matches: 348, Mismatches: 62, Indels: 37
0.78 0.14 0.08
Matches are distributed among these distances:
156 2 0.01
157 10 0.03
158 298 0.86
159 34 0.10
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGAGGGTTGCGATAGCAGGATCGGCA
GCACGAAGAGGGACCGGGACAATCCCCAGCTTGCGCATTCTGCCTCATGGTCGGCTGAGCGCCTG
CACGCTTGTTTCGTAGGTTGACTTAG
Found at i:30280512 original size:159 final size:157
Alignment explanation
Indices: 30280017--30280502 Score: 499
Period size: 159 Copynumber: 3.1 Consensus size: 157
30280007 TAATCGTACA
* * **
30280017 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTACGATAGTAGGATCGATGGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCG-AGGTTGCGATAGTAGGATCGACAGCACACA
* * * * * * * *
30280082 AGGGGGACCAGACCGATCCTCGGCTTGCGCATTCTGCCTTTTTGACCGGTTGAGTGCCCGCACGC
65 AGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGTGCCCGCACGC
* * *
30280147 CCGTTTCATGGGTTGGCTTAGGCCTAGG
130 TCGTTTCATGGGTTGGCTTAGGCATACG
** * * * * ** * * *
30280175 GAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGACCGACTGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGA-GGTTGCGATAGTAGGATCGACAGCACA
* * * * * *
30280238 CAGAGGGGGATCGGGTCGATCCTCAGCTTACGCATTATGCCTCTTCGGCCGACTTAGTGCCAGCA
63 CA-AGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGTGCCCGCA
* * *
30280303 CGCTCATTTCATGGGTTGACTTATGCATACG
127 CGCTCGTTTCATGGGTTGGCTTAGGCATACG
*
30280334 GAGTTTATTCCCAGTCTAAGATCAGATCGGACCGAGGTTTGCGATAGTAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGG-TTGCGATAGTAGGATCGACAGCACACA
* * * ** *
30280399 AGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTTGGCTGAGCGCCCGCACG
65 AGG-GGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGTGCCCGCACG
* *
30280464 CTCGTTTCGTGGGTTGGCTTAGGCATATG
129 CTCGTTTCATGGGTTGGCTTAGGCATACG
30280493 GAGTTCATTC
1 GAGTTCATTC
30280503 AATGTCTAAG
Statistics
Matches: 256, Mismatches: 64, Indels: 15
0.76 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 49 0.19
159 200 0.78
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGTTGCGATAGTAGGATCGACAGCACACAA
GGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGTGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACG
Found at i:30280525 original size:26 final size:25
Alignment explanation
Indices: 30280486--30280537 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
30280476 GTTGGCTTAG
* *
30280486 GCATATGGAGTTCATTCAATGTCTAA
1 GCATACGGAATTCATTCAA-GTCTAA
*
30280512 GCATACGGAATTCATTCCAGTCTAA
1 GCATACGGAATTCATTCAAGTCTAA
30280537 G
1 G
30280538 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGGAATTCATTCAAGTCTAA
Found at i:30281541 original size:159 final size:159
Alignment explanation
Indices: 30281265--30281734 Score: 456
Period size: 159 Copynumber: 3.0 Consensus size: 159
30281255 CTAAGATCAA
* * * * ** *
30281265 ACCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGAAACTGGG-TCGATCCCCGGC
1 ACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGGGGGGACCGGGCTCGATCCCCGGC
* * * * * *
30281329 TTGGGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGC
66 TTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCTGCACGCTC-ATTTCATGGGTTGGCTTAGGC
* * * *
30281393 ATAGGGAGTAAATTCCATGTCTAACCCCT-AG
130 ATACGAAGTTAATTCCATGTCTAA--CATGAG
* * *
30281424 -TCGGACCGAGGGTTGTGGCAGC-GTGATCGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCG
1 ACCAGACCGAGGGTTGTGGCAGCAG-GATCGACAGCACGAAG-GGGGGACCGGGCTCGATCCCCG
* * * * **
30281486 GCTTGCGCATTATGCCTCTCCGACTAGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGATTTAGG
64 GCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGG
* * *
30281551 CATACGAAGTTTATTCCCA-GTCTAAGATGGG
129 CATACGAAGTTAATT-CCATGTCTAACATGAG
* * *
30281582 ACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACAAAGGGGGGGACC-GACTCGATCCCCGG
1 ACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAA-GGGGGGACCGGGCTCGATCCCCGG
* * * *
30281646 CTTGCACATTCTACCTCTTCGACCCA-CTGAACG-CTCGCACGCTCATTTCATGGGTTGGCTTAG
65 CTTGCGCATTCTGCCTCTCCGA-CCAGCTGAGCGCCT-GCACGCTCATTTCATGGGTTGGCTTAG
*
30281709 GCATACGAAGTTCATTCCATGTCTAA
128 GCATACGAAGTTAATTCCATGTCTAA
30281735 GCATACGGAG
Statistics
Matches: 253, Mismatches: 45, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
157 2 0.01
158 41 0.16
159 201 0.79
160 9 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
ACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGGGGGGACCGGGCTCGATCCCCGGC
TTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCA
TACGAAGTTAATTCCATGTCTAACATGAG
Found at i:30281759 original size:26 final size:26
Alignment explanation
Indices: 30281709--30281761 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30281699 GTTGGCTTAG
*
30281709 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
30281735 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
30281761 G
1 G
30281762 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:30281948 original size:26 final size:26
Alignment explanation
Indices: 30281918--30281970 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30281908 GTTGACTTAG
*
30281918 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30281944 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30281970 G
1 G
30281971 ATCAGATTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30282296 original size:26 final size:26
Alignment explanation
Indices: 30282260--30282312 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30282250 GTTGGCTTAG
30282260 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30282286 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30282312 G
1 G
30282313 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30283874 original size:26 final size:26
Alignment explanation
Indices: 30283838--30283890 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30283828 GTTGACTTAG
* * *
30283838 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTAATCCCCAATCTAA
*
30283864 GCATACCGAGTTAATTCCCAATCTAA
1 GCATACCGAGTTAATCCCCAATCTAA
30283890 G
1 G
30283891 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTAATCCCCAATCTAA
Found at i:30284228 original size:159 final size:159
Alignment explanation
Indices: 30284055--30284357 Score: 353
Period size: 159 Copynumber: 1.9 Consensus size: 159
30284045 TAAGCCCTAG
* * * * *
30284055 CCAGATCGAAGGTTGTGGCAGGGGGACCGATAGCACGCAGATGG-GGACCGGGCCAAACCCCGAC
1 CCAGACCGAAGGTTGCGGCAGGAGGACCGACAGCACGCAG-GGGAGGACCGGGCCAAACCCCGAC
* *
30284119 TTGCGCATTATGCCTTTTTGACT-GGCT-CAGTGCCCACACGCTCATTTCATGGG-TTGAATTAG
65 TTGCGCATTATGCCTTTCT-ACTCGG-TACAGCGCCCACACGCTCATTTCATGGGTTTG-ATTAG
30284181 GCATACAGAGTTCATTCCCAATCTAAGATTAGA
127 GCATACAGAGTTCATTCCCAATCTAAGATTAGA
* * * * * ***
30284214 CCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGAGGACCGGGCCGATCTTTGACT
1 CCAGACCGAAGGTTGCGGCAGGAGGACCGACAGCACGCAGGGGAGGACCGGGCCAAACCCCGACT
* * * * *
30284279 TGCGCATTCTGCCTTTCTAGTCGGTAGAGCGCCCACACGCTCATTTCGTGGGTTTGCTTAGGCAT
66 TGCGCATTATGCCTTTCTACTCGGTACAGCGCCCACACGCTCATTTCATGGGTTTGATTAGGCAT
*
30284344 ACAGAGTTTATTCC
131 ACAGAGTTCATTCC
30284358 ATGTCTAAGC
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
158 5 0.04
159 111 0.93
160 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CCAGACCGAAGGTTGCGGCAGGAGGACCGACAGCACGCAGGGGAGGACCGGGCCAAACCCCGACT
TGCGCATTATGCCTTTCTACTCGGTACAGCGCCCACACGCTCATTTCATGGGTTTGATTAGGCAT
ACAGAGTTCATTCCCAATCTAAGATTAGA
Found at i:30284636 original size:878 final size:862
Alignment explanation
Indices: 30282940--30284959 Score: 2334
Period size: 878 Copynumber: 2.3 Consensus size: 862
30282930 TCTCTGGTCG
** * * * *
30282940 GCTGAGCACCTACACGCTCGTTTC-ATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAA
1 GCTGAGCACCCGCACACTCATTTCGA-GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * *
30283004 GTATATGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCAACAGCAAGATCGACA
65 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * * *
30283069 GCAC--ACAGGGGGGTCCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCTATCGGCTGAGCG
130 GCACGTA-AGGGGGAT-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCATCGGCTGAGCG
* * * *
30283132 CCTGCACGTCCATTTC--GTG--GG-TT-GGCTTAGGGAGTTCATTCCATGTCTAAGCCCAAGCC
192 CCCGCACGCCCGTTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCC
* * * * ** * *
30283191 GGATCGAGGGTTGTGGCAGCGGGATCGATAACACCTAGAGGGGGAGCGGGCTGATCCTCGACTTG
257 AGATCGAAGGTTGTGGCAGCGGGACCGATAACACCTAGAGGGGGACCGGGCCAAACCCCGACTTG
* * * *
30283256 CGTATTATGCCTCTCTGATCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
322 CGCATTATGCCTCTCTGATCGGCTCAGTGCCCACACGCTCATTTCATGGGTTGAATTAGGCATAC
* * * * * * * *
30283321 GAAGTTCATTCCCAGTCTAATATCGGATCGGATCGAGGGTTGTGGCAGCAGGGGGGACGGGGTCG
387 GAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGGGGGACCGGGCCG
* * * * ** * *
30283386 ATCCCTGGCTTGTGTATTCTGCCTGTCCGATCGGCTGAGCGCCCGTACGGTCGTTTCGTGGGTTG
452 ATCCCTGACTTGCGCATTCTGCCTGTCAGATCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTG
*
30283451 GCTTAGGCGTACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGA
517 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATT-G-
* * * *
30283516 CCAGACCGAGGGTTGCGGTGGCAGGACCAGCAACAGGATCGACAGCATGCAGGAGGGGATCGAAC
580 -CAGACCGAGGGTTGAGGTGGCAGGACCAGCAACAGGATCGACAACACGCAGGAGGGGACCGAAC
* * * * * * *
30283581 CGTTCCTCGACTTGTGTATTCTGCCTTTTCGACCGGCAAAGCGCTCGCACATTCATTTCGTGGGT
644 CGATCCTCGACTTGTGTATTATGCCTCTCCAACCGGCAAAGCACCCGCACATTCATTTCGTGGGT
* * * * *
30283646 TGGCTTAGGCATATGGTGTTCATTCCATGTCTAAGCCCTAGCCAGGCTGAGGGTTGTGGCAGCAG
709 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGACAGGCTGAAGGTTGTGGCAGCAA
* * * * * *
30283711 GATCGACAGCGGGATCGATAGCCCGTAGAGGGGAACCGGGTTGATCCCTGGCTTGCGCATTATGC
774 GATCAACAGCGAGATCGACAGCACATAGAGGGGAACCGGGCTGATCCCTGGCTTGCGCATTATGC
*
30283776 CTCTCCGATCAGCCTCTCCGGCCA
839 CTCTCCGACCAGCCTCTCCGGCCA
* ** *
30283800 GTTGAGTGCCCGCACATTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCACCCGCACACTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
** * * * * * **
30283865 CATACCGAGTTAATTCCCAATCTAAGATCGGATCAGATCGAGGGTTGCGGTAGTAGGATCGACAG
66 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGACAG
* * * *
30283930 CACGTAAGGGGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTGCCC
131 CACGTAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-ATCGGCTGAGCGCCC
* * *
30283995 GTACGCCCGTTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCTAGCCAGA
195 GCACGCCCGTTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGA
* * *
30284060 TCGAAGGTTGTGGCAGGGGGACCGATAGCACGC-AGATGGGGACCGGGCCAAACCCCGACTTGCG
260 TCGAAGGTTGTGGCAGCGGGACCGATAACAC-CTAGAGGGGGACCGGGCCAAACCCCGACTTGCG
* *
30284124 CATTATGCCTTTTTGA-CTGGCTCAGTGCCCACACGCTCATTTCATGGGTTGAATTAGGCATAC-
324 CATTATGCCTCTCTGATC-GGCTCAGTGCCCACACGCTCATTTCATGGGTTGAATTAGGCATACG
*
30284187 AGAGTTCATTCCCAATCTAAGATTAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGC
388 A-AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGG-T-------T--G-T-G---GCA-GC
** *
30284252 AGGGGAGGACCGGGCCGATCTTTGACTTGCGCATTCTGCCTTTCTAG-TCGG-TAGAGCGCCCAC
436 AGGGG-GGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTGTC-AGATCGGCT-GAGCGCCCAC
* * *
30284315 ACGCTCATTTCGTGGGTTTGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCATATGGAGTTCA
498 ACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
* * * *
30284380 TTCCCAGTCTAAGA-T-CAGATCGAGGGTTGAGGTGGTAGGACCAGCAGCAGGATCGACAACACG
563 TTCCCAATCTAAGATTGCAGACCGAGGGTTGAGGTGGCAGGACCAGCAACAGGATCGACAACACG
* ***
30284443 CA-GAGGGGGACC-AGACCGATCCTCGGCTTGTGTATTATGCCTCTCCAACCGGTTGAGCACCCG
628 CAGGA-GGGGACCGA-ACCGATCCTCGACTTGTGTATTATGCCTCTCCAACCGGCAAAGCACCCG
* *
30284506 TACATTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTA-ACTGGA
691 CACATTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGACAGG-
* * * * *
30284570 CTGAAGGTTGTGGCAGTAAGATCAACAGCTAGATCGGCAGCACATGGAGGGGAACTGGGCTGATC
755 CTGAAGGTTGTGGCAGCAAGATCAACAGCGAGATCGACAGCACATAGAGGGGAACCGGGCTGATC
* * *
30284635 CCTGGCTTGCGCATTATGCCTCTCCGACCGGCTTCTCCGGCCG
820 CCTGGCTTGCGCATTATGCCTCTCCGACCAGCCTCTCCGGCCA
* * * *
30284678 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
1 GCTGAGCACCCGCACACTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
30284743 CATATGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGACAGTAGGATCGACA
66 CATATGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGACAGTAGGATCGACA
* * * * *
30284807 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGTCTTTCCAGCCGGCTGAGCGCC
130 GCACGTAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCA-TCGGCTGAGCGCC
* * * * **
30284872 CGCATGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
194 CGCACGCCCGTTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAG
* * *
30284937 ATCGAGGGTTATGGTAGCGGGAC
259 ATCGAAGGTTGTGGCAGCGGGAC
30284960 TGGCAGCACG
Statistics
Matches: 964, Mismatches: 159, Indels: 56
0.82 0.13 0.05
Matches are distributed among these distances:
859 2 0.00
860 157 0.16
861 8 0.01
862 4 0.00
864 2 0.00
865 4 0.00
866 172 0.18
867 2 0.00
874 1 0.00
876 1 0.00
877 9 0.01
878 475 0.49
881 3 0.00
882 9 0.01
883 114 0.12
884 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (862 bp):
GCTGAGCACCCGCACACTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGACAG
CACGTAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCATCGGCTGAGCGCCCG
CACGCCCGTTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGAT
CGAAGGTTGTGGCAGCGGGACCGATAACACCTAGAGGGGGACCGGGCCAAACCCCGACTTGCGCA
TTATGCCTCTCTGATCGGCTCAGTGCCCACACGCTCATTTCATGGGTTGAATTAGGCATACGAAG
TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGGGGGACCGGGCCGATCC
CTGACTTGCGCATTCTGCCTGTCAGATCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTT
AGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGCAGACC
GAGGGTTGAGGTGGCAGGACCAGCAACAGGATCGACAACACGCAGGAGGGGACCGAACCGATCCT
CGACTTGTGTATTATGCCTCTCCAACCGGCAAAGCACCCGCACATTCATTTCGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCCCTAGACAGGCTGAAGGTTGTGGCAGCAAGATCAAC
AGCGAGATCGACAGCACATAGAGGGGAACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCG
ACCAGCCTCTCCGGCCA
Found at i:30284752 original size:26 final size:26
Alignment explanation
Indices: 30284716--30284768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30284706 GTTGACTTAG
30284716 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
30284742 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30284768 G
1 G
30284769 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30285235 original size:13 final size:13
Alignment explanation
Indices: 30285219--30285252 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
30285209 ATCGAGGTAA
30285219 CAATCAGGAGATT
1 CAATCAGGAGATT
30285232 CAATCAGGAGATT
1 CAATCAGGAGATT
30285245 CAATCAGG
1 CAATCAGG
30285253 GTGAGTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (13 bp):
CAATCAGGAGATT
Found at i:30290928 original size:25 final size:25
Alignment explanation
Indices: 30290894--30290943 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
30290884 TTGGCTTAGG
30290894 CATACGGAGTTCA-TCCCATGTCTAA
1 CATACGGAGTTCATTCCCA-GTCTAA
30290919 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
30290944 GATCAAACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (25 bp):
CATACGGAGTTCATTCCCAGTCTAA
Found at i:30291289 original size:26 final size:26
Alignment explanation
Indices: 30291259--30291311 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30291249 GTTGACTTAG
*
30291259 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
30291285 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30291311 G
1 G
30291312 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30291797 original size:26 final size:26
Alignment explanation
Indices: 30291761--30291813 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30291751 GTTGGCTTAG
30291761 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30291787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30291813 G
1 G
30291814 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30292623 original size:159 final size:158
Alignment explanation
Indices: 30292320--30292663 Score: 431
Period size: 159 Copynumber: 2.2 Consensus size: 158
30292310 CATAATCTAA
* * * * *
30292320 GCATACGAAGTTCATTCCCA-GTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGAAGTTCATT-CCATGTCTAAGACCCAATCGAACCGAGGGTTGCGGCAGCAGGATCGGC
* * * **
30292384 AGCACGTAAGGGGGATCGGGGCGATCCTCGGCTTATGCATTCTGCCTTTCCAACCGGCTGAGCAC
65 AGCACGCAAGGGGGATCGGGGCGATCCCCGGCTTATGCATTCTGCCTCTCCAACCGAATGAGCAC
* *
30292449 CCGTACGCTCATTTCGTGGGTTGGCTTAG
130 CCGCACGATCATTTCGTGGGTTGGCTTAG
* * * * * *
30292478 GCATACGGACTTCATTCCATGTCTAAGACCCAATCGAACTGAGGGTTGTGGTAGCGGGATCGGCA
1 GCATACGAAGTTCATTCCATGTCTAAGACCCAATCGAACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
30292543 GCATGCAGAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGAATGAGCGA
66 GCACGCA-AGGGGGATCGGGGCGATCCCCGGCTTATGCATTCTGCCTCTCCAACCGAATGAGC-A
*
30292608 -CCGCACGATCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGATCATTTCGTGGGTTGGCTTAG
30292637 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
30292664 CATACAGAGT
Statistics
Matches: 157, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
157 3 0.02
158 55 0.35
159 98 0.62
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGACCCAATCGAACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAAGGGGGATCGGGGCGATCCCCGGCTTATGCATTCTGCCTCTCCAACCGAATGAGCACC
CGCACGATCATTTCGTGGGTTGGCTTAG
Found at i:30292666 original size:26 final size:26
Alignment explanation
Indices: 30292637--30292689 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30292627 GTTGGCTTAG
30292637 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
30292663 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30292689 G
1 G
30292690 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30293402 original size:26 final size:26
Alignment explanation
Indices: 30293372--30293424 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30293362 GTTGGCTTAG
30293372 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
30293398 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30293424 G
1 G
30293425 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30293822 original size:367 final size:351
Alignment explanation
Indices: 30293349--30294332 Score: 957
Period size: 367 Copynumber: 2.8 Consensus size: 351
30293339 GCGTCCATAT
* * *
30293349 GCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* * *
30293414 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGACTAGTAGCAGGATCGACAGCAC
66 CCCAGTCTAAGATCGGA-CTGACCGAGAGTTGC-GCAGCAAGAC-AGTAGCAGGATCGACAGCAC
* ** ** *
30293479 GCGGGGTGGACCGA-TCCAATCCTTGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGTGCCCGC
128 GCGGGG-GGACCGAGTCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCCCGC
* * *
30293543 ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAGGCCCCAGTCGGACA
192 ATGCTCGTTTCATGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAGGCCCCAGACCGA-A
* * **
30293608 T-AAGGTTGTGGCAGCAGGACCGACAGCAAGATCGGTAGCAAGCAGAGGGGGATCGGGCTGATCC
255 TCAAGGTTGTGGCAGCAAGACCGACAACAAGATCGACAGCAAGCAGAGGGGGATCGGGCTGATCC
* *
30293672 -CTGGCTTGCACATTATGCCTCTCCAATCGATTGAGTGCCCGCAC
320 TC-GGCTT--ACATCA-G-C-CT---A-C---TGAGCGCCCGCAC
* *
30293716 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTCATT
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* *
30293781 CCCAGTCTAAGATTGGACTGGACCGAGAGTTGCGACAGCAAGACCAGCAGCAGGATC-AGCAGCA
66 CCCAGTCTAAGATCGGACT-GACCGAGAGTTGCG-CAGCAAGA-CAGTAGCAGGATCGA-CAGCA
* * * * * * *
30293845 CGCATGAGGGGACC-AGGCTGATCCCCGACTTACG-ATTCTGCCTCTTCGATCGACTGAATGCCC
127 CGC--GGGGGGACCGAGTCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCCC
* ** * *
30293908 GTATGCTTATTTCTTGGGTTGGCTTAGGCATACGAAGTTCAATCCATGTCTAAGG-CCCA-ACCG
190 GCATGCTCGTTTCATGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCT-AGGCCCCAGACCG
* ** ** * *
30293971 AATCGAGGGTTGTGGCAGCAAGACCGGTAACGGGATCGACAGCACGCAGAGGGGGATCGGGTTGA
253 AATC-AAGGTTGTGGCAGCAAGACCGACAACAAGATCGACAGCAAGCAGAGGGGGATCGGGCTGA
* *
30294036 TCTTCGGCTTACGTCAGCCTACTGAGCGCCCGCAC
317 TCCTCGGCTTACATCAGCCTACTGAGCGCCCGCAC
* * * *
30294071 GCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTTAT
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCAT
*
30294135 TCCCAGTCTAAGATCGGACCTGACC--GAG--G-GCTGC--GACAGT---AGGATCGACAGCACG
65 TCCCAGTCTAAGATCGGA-CTGACCGAGAGTTGCGCAGCAAGACAGTAGCAGGATCGACAGCACG
* * * * * *
30294190 TAGGGGGGACCGAGT-CGATCCCCGGCTTACGCATTCTGCCTCTCCAACTGGCTGAGAGCCTGCA
129 -CGGGGGGACCGAGTCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCCCGCA
* * * *
30294254 TGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAG-CCAGATT
193 TGCTCGTTTCATGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAGGCCCCAGACC-GAAT
* *
30294318 GAGGGTTGTGGCAGC
256 CAAGGTTGTGGCAGC
30294333 CGGACCGAGG
Statistics
Matches: 517, Mismatches: 78, Indels: 68
0.78 0.12 0.10
Matches are distributed among these distances:
342 24 0.05
343 98 0.19
344 5 0.01
346 3 0.01
347 2 0.00
349 3 0.01
350 1 0.00
351 1 0.00
353 3 0.01
355 87 0.17
356 5 0.01
358 1 0.00
359 1 0.00
362 2 0.00
363 1 0.00
364 1 0.00
365 6 0.01
366 7 0.01
367 243 0.47
368 20 0.04
369 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (351 bp):
GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACTGACCGAGAGTTGCGCAGCAAGACAGTAGCAGGATCGACAGCACGCG
GGGGGACCGAGTCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCCCGCATGC
TCGTTTCATGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAGGCCCCAGACCGAATCAAGG
TTGTGGCAGCAAGACCGACAACAAGATCGACAGCAAGCAGAGGGGGATCGGGCTGATCCTCGGCT
TACATCAGCCTACTGAGCGCCCGCAC
Found at i:30294130 original size:26 final size:26
Alignment explanation
Indices: 30294094--30294146 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30294084 GTTGACTTAG
30294094 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30294120 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30294146 G
1 G
30294147 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30294359 original size:21 final size:21
Alignment explanation
Indices: 30294318--30294360 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
30294308 CAGCCAGATT
**
30294318 GAGGGTTGTGGCAGCCGGACC
1 GAGGGTTGTGGCAGCAAGACC
*
30294339 GAGGGTTGTGGCAGTAAGACC
1 GAGGGTTGTGGCAGCAAGACC
30294360 G
1 G
30294361 GCAGCACGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.19, G:0.47, T:0.16
Consensus pattern (21 bp):
GAGGGTTGTGGCAGCAAGACC
Found at i:30295378 original size:26 final size:26
Alignment explanation
Indices: 30295342--30295394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30295332 GTTGACTTAG
*
30295342 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
30295368 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
30295394 G
1 G
30295395 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:30295683 original size:159 final size:157
Alignment explanation
Indices: 30295454--30295867 Score: 506
Period size: 157 Copynumber: 2.6 Consensus size: 157
30295444 GGACGGATCG
* * * * * * *
30295454 ATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGGGGGTTG
1 ATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTG
* * * **
30295519 GCTTAGGCATAGGGAGTTCATTCCATGTCTAA-TTCACAGTCAAACTGAGGGTTGTGGCAGCGGG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGATC-CA-TCAAACTGAGGGTTGCGGCAGCAAG
**
30295583 ATCGGTAGCACGCAAAGGAGGACCGGGCCA
129 ATCGACAGCACGC-AAGGAGGACCGGGCCA
* * * * *
30295613 ATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACACTCATTTTGTGGGTTG
1 ATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTG
* * * * *
30295678 ACTTAGGCATACGGAGTTCATTCCTTGTATAAGATCGATCAGACTGAGGGTTGCGGCAGCAAGAT
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCATCAAACTGAGGGTTGCGGCAGCAAGAT
* *
30295743 CGACAGCACGCAAGGGGGATCGGGCCA
131 CGACAGCACGCAAGGAGGACCGGGCCA
* * * * *
30295770 ATCCTCGACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCTTATTTCGTGGGTTG
1 ATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTG
*
30295835 GCTTAGGCATACGGAGTTCATTTCATGTCTAAG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG
30295868 CATACGGAGT
Statistics
Matches: 214, Mismatches: 40, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
157 98 0.46
158 32 0.15
159 82 0.38
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (157 bp):
ATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCATCAAACTGAGGGTTGCGGCAGCAAGAT
CGACAGCACGCAAGGAGGACCGGGCCA
Found at i:30295890 original size:26 final size:26
Alignment explanation
Indices: 30295841--30295893 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30295831 GTTGGCTTAG
*
30295841 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30295867 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
30295893 G
1 G
30295894 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30296244 original size:26 final size:26
Alignment explanation
Indices: 30296208--30296260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30296198 GTTGACTTAG
*
30296208 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30296234 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30296260 G
1 G
30296261 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30296688 original size:156 final size:156
Alignment explanation
Indices: 30296234--30296723 Score: 522
Period size: 156 Copynumber: 3.1 Consensus size: 156
30296224 CCCAGTCTAA
* *
30296234 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGA-TCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ATCGGACT-GAGGGTTGCGGCAGCAGGATCGAC
* * * *
30296298 AGCATGCAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCT-TTTCGGCCGGCTAAGCGC
64 AGCACGCAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCT-GGCCGGCTAAGCGC
* * *
30296362 CCGCACGCCCGTTTCGGGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
30296391 GCATAGGGAGTTCATT-CCATGTCTAA-TTCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-CGA-TCGGACTGAGGGTTGCGGCAGCAGGATCGA
** * * * *
30296454 CAGCTCACAAAGGGGGA-CTGAACCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAG
63 CAG--CACGCAGGGGGATC-GAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAG
* * * * *
30296518 CACCCACACACTCATTTTGTGGGTTGACTTAG
125 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
30296550 GCATATGGAGTTCATTCCCAATCTAAGATCGATTGGACTGAGGGTTGCGGCAGCAAGATCGATAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAG
* * * *
30296615 CACGCAGGGGGATCGAGCCAATCCCTGACTTGCGCATTCTGCCTCTCTGGCCTGCTGAGCGCCCG
66 CACGCAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCGCCCG
* *
30296680 TACGCTCATTTCATGGGTTGGCTTAG
131 CACGCTCATTTCGTGGGTTGGCTTAG
30296706 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
30296724 GTGTCCAAGC
Statistics
Matches: 267, Mismatches: 55, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
156 95 0.36
157 49 0.18
158 27 0.10
159 91 0.34
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:30297029 original size:866 final size:857
Alignment explanation
Indices: 30295304--30297371 Score: 2616
Period size: 866 Copynumber: 2.4 Consensus size: 857
30295294 TCTCTGGTTG
* * *
30295304 GCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
1 GCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * * * *
30295369 CATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACAGCAGTAGGATCGGCAG
66 CATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
* * * *
30295434 CACGCAGGGTGGAC-GGATCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
131 CATGCAGGG-GGACGGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
* *
30295498 GCACGCCCGTTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCACAGTCAAA
194 GCACGCCCGTTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGAA
* * ** * **
30295563 CTGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAAAGGAGGACCGGGCCAATCCTCGGCTTGCGC
259 CCGAGGGTTGTGGCAGCGGGACCGACAGCACACAAAGGAGGACCGAACCAATCCTCGGCTTGCGC
* *
30295628 ATTATGCCTCTCCGGTCGGCTCAGCACCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGA
324 ATTATGCCTCTCCGGCCGGCTCAGCACCCACACACTCATTTTGTGGGTTGACTTAGGCATACGGA
***
30295693 GTTCATTCCTTGTATAAGATCGATCAGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAAGG
389 GTTCATTCCCAATATAAGATCGATCAGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAAGG
* *
30295758 GGGATCGGGCCAATCCTCGACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCTTA
454 GGGATCGAGCCAATCCTCGACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCTCA
* * *
30295823 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGTTCATTCCCAG
519 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGGAGTTCATTCCCAG
*
30295888 TCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGACTAGTAGCAGGATCGACAGCACGTAGG
584 TCTAAGATCAGATCGGATCGAGGGTT--GGT---AGGAC---TAGCAGGATCGACAGCACGTAGG
* * * * * * * * *
30295953 GGGGATCGGGTCGATCCCCGGTTTGCGTATTCTACCTCTTCGATCGGTTGAGCACCCGCACACTC
641 AGGGACCGGGTCGATCCCCGGCTTACGCATTCTACCTCTTCGACCAGCTGAACACCCGCACACTC
*
30296018 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGT
706 ATTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAGTCGGACCGAAGGT
* * * *
30296083 TGCAGCAGCAGGACCGACAGTGGGATCGACAGCACGTAGAGGCGGATCGGGCTGATCCCCGGCTT
771 TGCAGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGCGGACCGGGCTAATCCCCGGCTT
*
30296148 GTGCTTTATGCCTCTCCGGCCA
836 GCGCTTTATGCCTCTCCGGCCA
* * *
30296170 GCTGAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* *
30296235 CATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGACAG
66 CATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
* * * *
30296300 CATGCAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTTTTCGGCCGGCTAAGCGCCCG
131 CATGCAGGGGGA-CGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
*
30296365 CACGCCCGTTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGGAC
195 CACGCCCGTTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGAAC
* * * *
30296430 CGAGGGTTGTGGCAGCGGGACCGACAGCTCACAAAGGGGGACTGAACCGATCC-CTGGCTTGCGC
260 CGAGGGTTGTGGCAGCGGGACCGACAGCACACAAAGGAGGACCGAACCAATCCTC-GGCTTGCGC
*
30296494 ATTATGCCTCTCCGGCCGGCTCAGCACCCACACACTCATTTTGTGGGTTGACTTAGGCATATGGA
324 ATTATGCCTCTCCGGCCGGCTCAGCACCCACACACTCATTTTGTGGGTTGACTTAGGCATACGGA
* ** *
30296559 GTTCATTCCCAATCTAAGATCGATTGGACTGAGGGTTGCGGCAGCAAGATCGATAGCACGC-AGG
389 GTTCATTCCCAATATAAGATCGATCAGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAAGG
* * *
30296623 GGGATCGAGCCAATCC-CTGACTTGCGCATTCTGCCTCTCTGGCCTGCTGAGCGCCCGTACGCTC
454 GGGATCGAGCCAATCCTC-GACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCTC
* *
30296687 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCCAAGCATATGGAGTTCATTCCCA
518 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGGAGTTCATTCCCA
*
30296752 GTCTAAGATTAGATCGGATCGAGGGTT-GT-GG-C-AGCAGGATCGACAGCACGTAGGAGGGACC
583 GTCTAAGATCAGATCGGATCGAGGGTTGGTAGGACTAGCAGGATCGACAGCACGTAGGAGGGACC
* * * * * * *
30296813 GGGTCGATCCCCGGCTTACGCATTTTGCCTTTTCGGCCAGCTGAACACCCGCACGCTCGTTTCGT
648 GGGTCGATCCCCGGCTTACGCATTCTACCTCTTCGACCAGCTGAACACCCGCACACTCATTTCAT
* * * **
30296878 GGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCTCCAGTCGGATCGAGGGTTGTGGCA
713 GGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGCAGCA
* * * * *
30296943 GCAGGACTGACAGCGGGATCGATAGCATGCAGAGGTGGACCGGGCTAATCCCTGGCTTGCGCATT
778 GCAGGACCGACAGCGGGATCGACAGCACGCAGAGGCGGACCGGGCTAATCCCCGGCTTGCGC-TT
* *
30297008 ATACCTCTTCGGTCGGCCTCTCCGGTCG
842 -TA---------T--GCCTCTCCGGCCA
* * * * *
30297036 GCTGAGTGCCCGC-CAACTTGTTTCATGGGTTGACATAGGCATACGAAGTTCATCTCCAGTCTAA
1 GCTGAGTGCCCGCAC-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
30297100 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGCGGTAGTAGGATCGGT
65 GCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGTAGGATC-G-
* * *
30297164 AACA-CAT-AAGGGGGACCGGGCTGAT-CCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAG
127 -ACAGCATGCAGGGGGA-CGGGCTGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * ** * **
30297226 CG-TCGACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCA
189 CGCCCG-CACGCCCGTTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCA
** ** ** * * * * ** *
30297290 ACCGAACCGAGGGTTGTGGCAGCAAGATTGGCAGCACGCAAAGGGGGATCGGGCCGATCCTCGGC
253 GTCGAACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAAAGGAGGACCGAACCAATCCTCGGC
*
30297355 TTACGCATTATGCCTCT
318 TTGCGCATTATGCCTCT
30297372 TCAGCTAGCT
Statistics
Matches: 1042, Mismatches: 135, Indels: 49
0.85 0.11 0.04
Matches are distributed among these distances:
853 189 0.18
854 2 0.00
855 2 0.00
857 1 0.00
858 2 0.00
862 2 0.00
864 2 0.00
865 151 0.14
866 518 0.50
867 166 0.16
868 4 0.00
869 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (857 bp):
GCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
CATGCAGGGGGACGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
ACGCCCGTTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGTCGAACC
GAGGGTTGTGGCAGCGGGACCGACAGCACACAAAGGAGGACCGAACCAATCCTCGGCTTGCGCAT
TATGCCTCTCCGGCCGGCTCAGCACCCACACACTCATTTTGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAATATAAGATCGATCAGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAAGGGG
GATCGAGCCAATCCTCGACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCTCATT
TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGGAGTTCATTCCCAGTC
TAAGATCAGATCGGATCGAGGGTTGGTAGGACTAGCAGGATCGACAGCACGTAGGAGGGACCGGG
TCGATCCCCGGCTTACGCATTCTACCTCTTCGACCAGCTGAACACCCGCACACTCATTTCATGGG
TTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGCAGCAGCA
GGACCGACAGCGGGATCGACAGCACGCAGAGGCGGACCGGGCTAATCCCCGGCTTGCGCTTTATG
CCTCTCCGGCCA
Found at i:30297104 original size:26 final size:26
Alignment explanation
Indices: 30297074--30297126 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30297064 GTTGACATAG
30297074 GCATACGAAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
30297100 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30297126 G
1 G
30297127 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30297742 original size:342 final size:342
Alignment explanation
Indices: 30297055--30297781 Score: 892
Period size: 342 Copynumber: 2.1 Consensus size: 342
30297045 CCGCCAACTT
* * *
30297055 GTTTCATGGGTTGACATAGGCATACGAAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACG-AGTTTATCTCCAGTCTAAGCATACGGAGTTCATTCCCA
** * * *
30297120 GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGGTAACACATAAGGGGGACCGGGC
65 GTCTAAGATCAGACCAGACCGAGGGTTGCGACAGAAGGATCGGCAACACACAAGGGGGACCGGGC
* * * * * *
30297185 TGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGTCGACATGCCCGTTTCATGGGT
130 CGATCCTCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCGACACGCCCGTTTCATGGGT
* *
30297250 TGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAA
195 TGGCTTAGGAATAGGGAGTTCATTACATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAA
** * * * *
30297315 GATTGGCAGCACGCAAAGGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTTCAGCTAG
260 GACCGACAGCACGCAAAGAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCAGCCAG
** * * *
30297380 CTCAGTGCCTGCATGCTC
325 CTCAGCACCCGAACGCTC
* * *
30297398 GTTTCGTGGGTTGACTTATGCATACTGAGTTTATCCCCAGTCTAAGCATATGGAGTTCATT-CCA
1 GTTTCGTGGGTTGACTTAGGCATAC-GAGTTTATCTCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * * * *
30297462 GTCTATGATCGGGCCAGA-CGAAGGGTTGCGACAGAAGGTTTGGCAGCACGCAGGGGGGATCGGG
65 GTCTAAGATCAGACCAGACCG-AGGGTTGCGACAGAAGGATCGGCAACACACAAGGGGGACCGGG
* * *
30297526 CCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCAGCTTAGTAC-CCG-CACGCCCGTTTCGTG
129 CCGATCCTCGACTTACGCATTCTGCCTCTCCGACCAGCTGAG--CGCCGACACGCCCGTTTCATG
* *
30297589 GGTTGGCTTAGGAATAGGGAGTTCATTACATGTCTAAGCCCCAGCC-AGATCGAGGGTTGTGGCA
192 GGTTGGCTTAGGAATAGGGAGTTCATTACATGTCTAAGCCCCAACCGA-ACCGAGGGTTGTGGCA
* * * * *
30297653 GCAAGACCGACAGTATGCAGAGAGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCT-TTACG
256 GCAAGACCGACAGCACGCAAAGAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTT-CA
30297717 GCCAGCTCAGCACCCGAACGCTC
320 GCCAGCTCAGCACCCGAACGCTC
30297740 GTTTCGTGGGTTGACTTAGGCATACGGAGTTTAT-TCCAGTCT
1 GTTTCGTGGGTTGACTTAGGCATAC-GAGTTTATCTCCAGTCT
30297782 TAGATCAGAC
Statistics
Matches: 326, Mismatches: 52, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
341 12 0.04
342 257 0.79
343 55 0.17
344 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (342 bp):
GTTTCGTGGGTTGACTTAGGCATACGAGTTTATCTCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCGAGGGTTGCGACAGAAGGATCGGCAACACACAAGGGGGACCGGGCC
GATCCTCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCGACACGCCCGTTTCATGGGTT
GGCTTAGGAATAGGGAGTTCATTACATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAAG
ACCGACAGCACGCAAAGAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCAGCCAGC
TCAGCACCCGAACGCTC
Found at i:30297900 original size:156 final size:158
Alignment explanation
Indices: 30297509--30297943 Score: 475
Period size: 159 Copynumber: 2.8 Consensus size: 158
30297499 GTTTGGCAGC
* *
30297509 ACGCAGGGGGGATCGGGCCGAT-CCTCGGCTTACGCATTCTGCCTCTCCGACCAGCTTAGTACCC
1 ACGCAGGGGGGATCGGGCCGATCCCT-GGCTTACGCATTCTGCCTCTCCGACCAGCTCAGCACCC
* * * * * *
30297573 GCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTACATGTCTAAGCCCCAGCCAGA
65 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGA
* * **
30297638 TCGAGGGTTGTGGCAGCAAGACCGACAGT
130 ACAAGGGTTGCAGCAGCAAGACCGACAGT
* * * * * * * *
30297667 ATGCAGAGAGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCTTTACGGCCAGCTCAGCACCC
1 ACGCAG-GGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCAGCTCAGCACCC
* * * *
30297732 GAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCA-GTCTTAG-ATCAGACC-G
65 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG-CCAG
* * *
30297794 AACTAAGGGTTGCAGTAGCAAGATCGACTGT
129 AAC-AAGGGTTGCAGCAGCAAGACCGACAGT
* * * * *
30297825 ACGCAGGGGGGACCGAGCCG-TCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCG
1 ACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCAGCTCAGCACCCG
* * * *
30297889 CACGCTTGTTTCATGGGTTGCCCTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30297944 TACGGAGTTC
Statistics
Matches: 224, Mismatches: 47, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
156 75 0.33
157 22 0.10
158 40 0.18
159 85 0.38
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
ACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCAGCTCAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGAA
CAAGGGTTGCAGCAGCAAGACCGACAGT
Found at i:30297945 original size:26 final size:26
Alignment explanation
Indices: 30297915--30297967 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30297905 GTTGCCCTAG
30297915 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30297941 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30297967 G
1 G
30297968 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30298312 original size:26 final size:26
Alignment explanation
Indices: 30298282--30298334 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30298272 GTTGACTTAG
*
30298282 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
30298308 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30298334 G
1 G
30298335 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30298513 original size:865 final size:842
Alignment explanation
Indices: 30297024--30298808 Score: 1956
Period size: 865 Copynumber: 2.1 Consensus size: 842
30297014 CTTCGGTCGG
* * ** *
30297024 CCTCTCCGGTCGGCTGAGTGCCCGC-CAACTTGTTTCATGGGTTGACATAGGCATACGAAGTTCA
1 CCTCTCCAGCCGGCTGAGCACCCGCAC-ACTTGTTTCATGGGTTGACATAGGCATACGGAGTTCA
30297088 TCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTA
65 T-TCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTA
* * * * * *
30297153 GTAGGATCGGTAACACATAAGGGGGACCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGAT
129 GTAGCAGCGGTAACACATAAGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGAT
** * * *
30297218 CGGCTGAGCGTCGACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTA
194 CGGCTGAGCCCCGACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* ** ** * * *
30297283 AGCCCCAACCGAACCGAGGGTTGTGGCAGCAAGATTGGCAGCACGCAAAGGGGGATCGGGCCGAT
259 AGCCCCAACCGAACCGAAGGTTGCAGCAGCAAGAGCGGCAGCACGCAAAGGCGGATCGAGCCGAA
* * * ** *
30297348 CCTCGGCTTACGCATTATGCCTCTTCAGCTAGCTCAGTGCCTGCATGCTCGTTTCGTGGGTTGAC
324 CCTCGGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCGCCTGCACACTCGTTTCATGGGTTGAC
* * * * * *
30297413 TTATGCATACTGAGTTTATCCCCAGTCTAAGCATATGGAGTTCATTCCAGTCTATGATCGGGCCA
389 TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCAGTCTAAGATCGGACCA
** * * * * *
30297478 GACGAAGGGTTGCGACAGAAGGTTTGGCAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTACG
454 GACGAAGGGTTAAGACAGAAAGATCGACAGCACGCAGGGGGGATCGGACCGATCCTCGGCTTACG
** *
30297543 CATTCTGCCTCTCCGACCAGCTTAGTACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGG
519 CATTCTGCCTCTCCGACCAGCTTACCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGAATAGGG
* * * * **
30297608 AGTTCATTACATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCAAGACCGACAGTATGCAG
584 AGTTCATTACATGTCTAAGCCCCAGACAGATCGAGGGTTGTCGCAACAAGACCGACAGCACACAG
** * * * * * *
30297673 AGAGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCTTTACGGCCAGCTCAGCACCCGAACGC
649 AGAGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTACGACCAGCTCAACACCCAAACGC
* * * * *
30297738 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCC-AGTCTTAGATCAGACCGAACTAAGG
714 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAAGG
* * * * * *
30297802 GTTGCAGTAGCAAGATCGACTGTACGCAGGGGGGACCGAG-CCGTCC-CTGGCTTACGCATTCTA
779 ATTGCAGCAGCAAGATCGACAGCACACAGGGGGGACCGAGTCAGTCCTC-GGCTTACGCATTCTA
* * *
30297865 CCTCTCC-GACCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGCCCTAGGCATACGGAGTTCA
1 CCTCTCCAG-CCGGCTGAGCACCCGCACACTTGTTTCATGGGTTGACATAGGCATACGGAGTTCA
30297929 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCGGC
65 TTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGG-
* * *
30297993 TGCAGGACTAGCAGCAGGATCGACAGCACGTATGAGGGATCGGGCCGATCCCCGACTTGCGCATT
127 T--A-G--TAGCAGC-GG-T--A-A-CACATAAGAGGGACCGGGCCGATCCCCGACTTGCGCATT
* * *
30298058 CTACCTCTTCGATCGGTTGAGCACCCG-CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
181 CTACCTCTCCGATCGGCTGAGC-CCCGACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGT
** * * *
30298122 TCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGCAGCAGCAGGACCGGTAGCGGGATCGAC
245 TCATTCCATGTCTAAGCCCCAACCGAACCGAAGGTTGCAGCAGCA--A---G-AGCGGCAGC-AC
* ** * * *
30298187 AGCACACAGAAGCGGATCGAGCTGAACCTCGGCTTGTGCATTATGCCTCTCCGGCCGGCTGAGCG
303 -GCA-A-AG--GCGGATCGAGCCGAACCTCGGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCG
30298252 CCTGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGA
363 CCTGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGA
* * *
30298317 GTTCATTCCCAGTCTAAGATCGGACCGGATC-AAGGGTTAAGGCA-ACAAGATCGACAGCATGCA
428 GTTCATT-CCAGTCTAAGATCGGACCAGA-CGAAGGGTTAAGACAGA-AAGATCGACAGCACGCA
* * * * * * *
30298380 GGGGGGATCGGACCGATCC-CTGGCTTGCGTATTCTGCCTCTCCG-GCAGGTTGACCGCCCGTAT
490 GGGGGGATCGGACCGATCCTC-GGCTTACGCATTCTGCCTCTCCGACCAGCTT-ACCACCCGCAC
* * * **
30298443 GCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-GATGGATCGA
553 GCCCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTACATGTCTAAGCCCCAGACAGATCGA
* ** ** * *
30298507 GGGTTGTCGTAACGGGTTCGACAGCACACAGAGAGGGACCGAGTCGATCCCCGACTTACGTATTA
618 GGGTTGTCGCAACAAGACCGACAGCACACAGAGAGGGACCGAGCCGATCCCCGACTTACGCATTA
* * * * *
30298572 TGCCTCTCCGACCGGGTCAACGCCCAAACTCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
683 TGCCTCTACGACCAGCTCAACACCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
* * * * *
30298637 ATTCCTAGTCTAAGATCAGACTGGACCGAGGATTGCAGCAGCAGGATCGACAGCACATAGGGGGG
748 ATTCCTAGTCTAAGATCAGACCGAACCAAGGATTGCAGCAGCAAGATCGACAGCACACAGGGGGG
* * * *
30298702 ATCGAGTCAGTCTTCGGCTTGCGCATTCTG
813 ACCGAGTCAGTCCTCGGCTTACGCATTCTA
* * * * * *
30298732 CCTCTCCAGCCGGCTGAGCGCCCGCATACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCAGCCGGCTGAGCACCCGCACACTTGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
30298797 TCCCAGTCTAAG
66 T-CCAGTCTAAG
30298809 ATCAGACCAG
Statistics
Matches: 772, Mismatches: 133, Indels: 52
0.81 0.14 0.05
Matches are distributed among these distances:
840 6 0.01
841 109 0.14
842 2 0.00
844 1 0.00
845 1 0.00
847 5 0.01
848 2 0.00
849 1 0.00
851 1 0.00
852 1 0.00
853 124 0.16
854 2 0.00
855 1 0.00
858 1 0.00
859 5 0.01
860 2 0.00
861 3 0.00
862 1 0.00
863 2 0.00
865 228 0.30
866 187 0.24
867 82 0.11
868 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (842 bp):
CCTCTCCAGCCGGCTGAGCACCCGCACACTTGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
TCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGT
AGCAGCGGTAACACATAAGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCG
GCTGAGCCCCGACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAACCGAACCGAAGGTTGCAGCAGCAAGAGCGGCAGCACGCAAAGGCGGATCGAGCCGAACC
TCGGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCGCCTGCACACTCGTTTCATGGGTTGACTT
AGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCAGTCTAAGATCGGACCAGA
CGAAGGGTTAAGACAGAAAGATCGACAGCACGCAGGGGGGATCGGACCGATCCTCGGCTTACGCA
TTCTGCCTCTCCGACCAGCTTACCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAG
TTCATTACATGTCTAAGCCCCAGACAGATCGAGGGTTGTCGCAACAAGACCGACAGCACACAGAG
AGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTACGACCAGCTCAACACCCAAACGCTC
GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAAGGAT
TGCAGCAGCAAGATCGACAGCACACAGGGGGGACCGAGTCAGTCCTCGGCTTACGCATTCTA
Found at i:30298579 original size:158 final size:157
Alignment explanation
Indices: 30298358--30298830 Score: 411
Period size: 158 Copynumber: 3.0 Consensus size: 157
30298348 AAGGGTTAAG
* ** * * * *
30298358 GCAACAAGATCGACAGCATGCAGGGGGGATCG-GACCGATCCCTGGCTTGCGTATTCTGCCTCTC
1 GCAACAGGATCGACAGCACACAGGAGGGACCGAG-TCGATCCCCGGCTTGCGTATTCTGCCTCTC
* * * *
30298422 CGGCAGGTTGACCGCCCGTATGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 CGGCCGGCTGAACGCCCG-AT-CCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * *
30298486 GTCTAAGCCCCGA-TGGATCGAGGGTTGTC-
128 GTCTAAGACCAGACTGGACCGAGGATTG-CA
* * * * * *
30298515 GTAACGGGTTCGACAGCACACAGAGAGGGACCGAGTCGATCCCCGACTTACGTATTATGCCTCTC
1 GCAACAGGATCGACAGCACACAG-GAGGGACCGAGTCGATCCCCGGCTTGCGTATTCTGCCTCTC
* * * * * * *
30298580 CGACCGGGTCAACGCCCAAACTCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-TA
65 CGGCCGGCTGAACGCCCGATC-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-
*
30298644 GTCTAAGATCAGACTGGACCGAGGATTGCA
128 GTCTAAGACCAGACTGGACCGAGGATTGCA
* * * * ** *
30298674 GCAGCAGGATCGACAGCACATAGGGGGGATCGAGTC-AGTCTTCGGCTTGCGCATTCTGCCTCTC
1 GCAACAGGATCGACAGCACACAGGAGGGACCGAGTCGA-TCCCCGGCTTGCGTATTCTGCCTCTC
* * * *
30298738 CAGCCGGCTGAGCGCCCGCATACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-
65 CGGCCGGCTGAACGCCCG-ATCCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
* ** *
30298802 GTCTAAGATCAGACCAGACCGAGGCTTGC
128 GTCTAAGACCAGACTGGACCGAGGATTGC
30298831 GGCAGCAGAA
Statistics
Matches: 250, Mismatches: 55, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 22 0.09
158 193 0.77
159 34 0.14
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCAACAGGATCGACAGCACACAGGAGGGACCGAGTCGATCCCCGGCTTGCGTATTCTGCCTCTCC
GGCCGGCTGAACGCCCGATCCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGACCAGACTGGACCGAGGATTGCA
Found at i:30299128 original size:26 final size:26
Alignment explanation
Indices: 30299092--30299144 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30299082 GTTAACTTAG
30299092 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30299118 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30299144 G
1 G
30299145 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30299202 original size:61 final size:61
Alignment explanation
Indices: 30299107--30299223 Score: 234
Period size: 61 Copynumber: 1.9 Consensus size: 61
30299097 CGGAGTTCAT
30299107 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGTTCGAGGGAACTC
1 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGTTCGAGGGAACTC
30299168 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGTTCGAGGG
1 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGTTCGAGGG
30299224 TTGCGGTAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (61 bp):
CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGTTCGAGGGAACTC
Found at i:30299244 original size:12 final size:12
Alignment explanation
Indices: 30299227--30299256 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
30299217 TCGAGGGTTG
30299227 CGGTAGTAGGAT
1 CGGTAGTAGGAT
30299239 CGGTAGTAGGAT
1 CGGTAGTAGGAT
30299251 CGGTAG
1 CGGTAG
30299257 CATGCAGGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.43, T:0.23
Consensus pattern (12 bp):
CGGTAGTAGGAT
Found at i:30300057 original size:26 final size:26
Alignment explanation
Indices: 30300021--30300073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30300011 GTTGACTTAG
30300021 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30300047 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30300073 G
1 G
30300074 ATCAAACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30300409 original size:159 final size:158
Alignment explanation
Indices: 30300110--30300414 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 158
30300100 GTAGGATCGA
* * * *
30300110 CAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCA
1 CAGCACACAGGGGGGACCGGGCCGATCCCCAACTTACGCATTATGCCTCTCCGACTGGCTGAGCA
* * ** * * *
30300175 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCC
66 CCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATGCCTAGTCTAAGCACCAGCC
**
30300240 GGATCGAGGGTTGTGGCAGCTGGACCGG
131 ACATCGAGGGTTGTGGCAGCTGGACCGG
* * * * *
30300268 CAGCACACAGAGGGGGACCGGGCCGATCCCTAACTTGCGCATTATGCCTCTCTG-GTCGGCTTAG
1 CAGCACACAG-GGGGGACCGGGCCGATCCCCAACTTACGCATTATGCCTCTCCGACT-GGCTGAG
* * *
30300332 CGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATAGCC-AGTCTAAG-ATCA
64 CACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-GCCTAGTCTAAGCACCA
30300395 GACCACA-CTGAGGGTTGTGG
128 G-CCACATC-GAGGGTTGTGG
30300415 TAGCAGGATC
Statistics
Matches: 121, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
158 14 0.12
159 105 0.87
160 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
CAGCACACAGGGGGGACCGGGCCGATCCCCAACTTACGCATTATGCCTCTCCGACTGGCTGAGCA
CCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATGCCTAGTCTAAGCACCAGCC
ACATCGAGGGTTGTGGCAGCTGGACCGG
Found at i:30301908 original size:170 final size:171
Alignment explanation
Indices: 30301619--30302024 Score: 439
Period size: 170 Copynumber: 2.4 Consensus size: 171
30301609 AGGGTTGCGG
** * * * ** * * *
30301619 CAGCAGGATTGACAGTACGCAGA-GGGGATCGGGCCAATCCTCGACTTGCGCATTCTACCTCTCC
1 CAGCAGGATCAACAGCACGCAGAGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
* ** *
30301683 GGTCAGCTGAGTGCCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCA-G
66 GGTCAGCTGAGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
* *
30301747 TCTAAGATCG-GATCGGACCAAGGGTTGTGGCAGCAAGACC-A
130 TCTAAGATCGAG-TCAGACCAAGGGTTATGGCAGCAAGACCGA
* *
30301788 GTAGCAGGATCAACAGCACGTAG-GGGGGACCGAG-TCGATCCCCGGCTTGCGCATTCTGCCTCT
1 -CAGCAGGATCAACAGCACGCAGAGGGGGACCGAGCT-GATCCCCGGCTTGCGCATTCTGCCTCT
* *
30301851 TCGG-CTGGCTGAGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
64 CCGGTC-AGCTGAGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * * *
30301915 TGTCTAAGCTCTAGTCAGACCGAGGGTTATGGCAGTAGGACCGA
128 TGTCTAAGATCGAGTCAGACCAAGGGTTATGGCAGCAAGACCGA
* *** * *
30301959 CAGCGGGATCGGTAGCACGCAGAGGGGGACCGTGCTGATCCCCGGCTTGCGCATTATGCCTCTCC
1 CAGCAGGATCAACAGCACGCAGAGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
30302024 G
66 G
30302025 ATCGACCTCT
Statistics
Matches: 194, Mismatches: 34, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
169 4 0.02
170 149 0.77
171 40 0.21
172 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (171 bp):
CAGCAGGATCAACAGCACGCAGAGGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
GGTCAGCTGAGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGATCGAGTCAGACCAAGGGTTATGGCAGCAAGACCGA
Found at i:30302110 original size:26 final size:26
Alignment explanation
Indices: 30302080--30302132 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30302070 GTTGACGTAG
30302080 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
30302106 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30302132 G
1 G
30302133 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30302416 original size:159 final size:158
Alignment explanation
Indices: 30302170--30302609 Score: 399
Period size: 159 Copynumber: 2.8 Consensus size: 158
30302160 CAGGATCGGT
* * *** * * * ** * *
30302170 AGCACGCAGGGGGGACCCGGCCGATCCCTGGCTTACTCATTCTACCTCTCCGGTCGGCTGAGCGC
1 AGCACGCAGGGGGGATCAGGCCGATCCCCAACTTACGCATTC-AGCTCTTCGACCAGCTCAGCGC
* * * * *
30302235 CCGCACGCCCGTTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC
65 CCACACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
* *
30302299 -GAACCGAGGGTTGTGGCAGCAAGACCGAC
130 AG-ACCGAGGGTTGCGACAGCAAGACCGAC
** *
30302328 AGCACGCAGAGGGGGAT-AGAGCCGATCCCCGGCTTACGCATT-ATGCCTCTTCGGCCAGCTCAG
1 AGCACGCAG-GGGGGATCAG-GCCGATCCCCAACTTACGCATTCA-G-CTCTTCGACCAGCTCAG
* ** * * * *
30302391 TGCCTGCATGCTCGTTTTGTGGGTTGACTTA-TGCATACGGAGTTCATTCCCA-GTCTAAG-ATC
62 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAGT-CATACGGAGTTCATT-CCATGTCTAAGCACC
* * * *
30302453 AGACCAGACTGAGGGTTGCGACAGCAGGATCGAT
125 AGACCAGACCGAGGGTTGCGACAGCAAGACCGAC
* * * * *
30302487 AGCATGCAGGGGGGATCAGGCTGATCCCCAACTTGCGCATTCCAGCTCTTCGACCGGCTGAGCGC
1 AGCACGCAGGGGGGATCAGGCCGATCCCCAACTTACGCATT-CAGCTCTTCGACCAGCTCAGCGC
*
30302552 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 CCACACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCA
30302610 TACGGAGTTC
Statistics
Matches: 228, Mismatches: 40, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
157 4 0.02
158 100 0.44
159 119 0.52
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGGGGATCAGGCCGATCCCCAACTTACGCATTCAGCTCTTCGACCAGCTCAGCGCC
CACACGCTCGTTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCACCAGACCA
GACCGAGGGTTGCGACAGCAAGACCGAC
Found at i:30302571 original size:158 final size:155
Alignment explanation
Indices: 30302105--30302607 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 155
30302095 CTCCAGTCTA
* *
30302105 AGCATACGGAGTTCATTCCCA-GTCTAAGATC-GAACCGGACCAAAGGTTGC-AGCAGCAGGATC
1 AGCATACGGAGTTCATT-CCATGTCTAAGATCAG-ACC-GACCGAGGGTTGCGA-CAGCAGGATC
* * * * * * * *
30302167 GGTAGCACGCAGGGGGGACCCGGCCGATCCCTGGCTTACTCATTCTACCTCTCCGGTCGGCTGAG
62 GATAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTC-AGCTCTTCGGCCGGCTGAG
* *
30302232 CGCCCGCACGCCCGTTTCATGGGTTGGCTT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* ** * * * *
30302262 AGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCAAGACCG
1 AG-CATACGGAGTTCATTCCATGTCTAAG-ATCAGACCG-ACCGAGGGTTGCGACAGCAGGATCG
* * *
30302326 ACAGCACGCAGAGGGGGAT-AGAGCCGATCCCCGGCTTACGCATT-ATGCCTCTTCGGCCAGCTC
63 ATAGCACGCAG-GGGGGATCAG-GCCGATCCCCGGCTTACGCATTCA-G-CTCTTCGGCCGGCTG
* * * * *
30302389 AGTGCCTGCATGCTCGTTTTGTGGGTTGACTT
124 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
*
30302421 ATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGATCAGACC-GACCGAGGGTTGCGACAGCAGGATCG
* * ** * *
30302485 ATAGCATGCAGGGGGGATCAGGCTGATCCCCAACTTGCGCATTCCAGCTCTTCGACCGGCTGAGC
63 ATAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATT-CAGCTCTTCGGCCGGCTGAGC
*
30302550 GCCCACACGCTCGTTTCGTGGGTTGGCTT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTT
30302579 AGGCATACGGAGTTCATTCCATGTCTAAG
1 A-GCATACGGAGTTCATTCCATGTCTAAG
30302608 CATACGGAGT
Statistics
Matches: 277, Mismatches: 51, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
157 10 0.04
158 141 0.51
159 119 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (155 bp):
AGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGCGACAGCAGGATCGATA
GCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCAGCTCTTCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTT
Found at i:30302617 original size:26 final size:26
Alignment explanation
Indices: 30302581--30302633 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30302571 GTTGGCTTAG
30302581 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30302607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30302633 G
1 G
30302634 ATCAAATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30302772 original size:185 final size:184
Alignment explanation
Indices: 30302423--30302793 Score: 503
Period size: 185 Copynumber: 2.0 Consensus size: 184
30302413 GTTGACTTAT
* * *
30302423 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGAGTTGCGACAGCAGGATCGACA
* * * * * *
30302488 GCATGCAGGGGGGATCAGGCTGATCCCCAACTTGCGCATTCCAGCTCTTCGACCGGCTGAGCGCC
66 GCACGAAGGGGGGATCAGGCCGATCCCCAACTTGCGAATTCCAGCTCTCCGACCGACTGAGCGCC
*
30302553 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
30302607 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATC-GAACTGAGAGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG-ACTGAGAGTTGCGACAGCAGGATCGAC
* * ** * *
30302671 AGCACGAAGGGGGGGATCGGGCCGATCCCCATCTTGCGAATT-TTGCCTCTCCGGCCGACTGAGT
65 AGCACGAA-GGGGGGATCAGGCCGATCCCCAACTTGCGAATTCCAG-CTCTCCGACCGACTGAGC
**
30302735 GCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 GCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
30302792 GC
1 GC
30302794 CCCAGTCGGA
Statistics
Matches: 162, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
183 1 0.01
184 62 0.38
185 99 0.61
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGAGTTGCGACAGCAGGATCGACA
GCACGAAGGGGGGATCAGGCCGATCCCCAACTTGCGAATTCCAGCTCTCCGACCGACTGAGCGCC
CACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:30309570 original size:25 final size:26
Alignment explanation
Indices: 30309533--30309584 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
30309523 GTTGACTTAG
30309533 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30309559 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30309584 G
1 G
30309585 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30310032 original size:158 final size:156
Alignment explanation
Indices: 30309559--30310059 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 156
30309549 CCCAGTCTAA
** * * *
30309559 GCATAC-GAGTTCATTCCCA-GTCTAAGATCGAACCGGGTCGAGGGTTACGGCAGCAGTATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * *
30309622 AGCACGCAGGGGGGACAAGGCCAAT-CCTAGGCTTGCGCATTCTGCCTCTCTGATCGGTCGAGCG
65 AGCACGCAGGGGGGACGA-GCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGATCGCT-GAGCG
*
30309686 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
127 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * ** *
30309716 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACTGAGGTTTGTGGCAGTGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * * * *
30309781 GCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCAC
66 GCACGCAG-GGGGGA-CGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATC-GCTGAGCGC
* * *
30309846 CCGTACACTCATATT-GTGGGTTGACTTAG
128 CCGTACGCTCGT-TTCGTGGGTTGGCTTAG
* *
30309875 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * *
30309939 AGCACGTAGGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTTGACTGAGCGC
65 AGCACGCAGGGGGGA-CGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCG-CTGAGCGC
* *
30310004 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
30310033 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30310060 CATACGGAGT
Statistics
Matches: 270, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 14 0.05
158 133 0.49
159 113 0.42
160 10 0.04
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGCTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30310069 original size:26 final size:26
Alignment explanation
Indices: 30310033--30310085 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30310023 GTTGGCTTAG
30310033 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30310059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30310085 G
1 G
30310086 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30310781 original size:157 final size:156
Alignment explanation
Indices: 30310502--30311241 Score: 702
Period size: 159 Copynumber: 4.7 Consensus size: 156
30310492 GTAGGATCGA
* * * * * * * * *
30310502 CAGCATGCAGAGGGGATCGGGTCGATCCCCGGCATGCGCATTCTGCCTCTCCGGTCGACTGAGCA
1 CAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCT-CGGTCGGCTCAGCG
* * * * *
30310567 CCCTACACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
65 CCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
30310632 CAGACCGAGGGTTGTGGTAGCGAGATCTG
129 CGGACCGAGGGTTGTGGCAGCGAGA-CTG
* * * *
30310661 CAACACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCGGTCGGCTGAGCGC
1 CAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCGGTCGGCTCAGCGC
* * * * *
30310726 TCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
66 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * *
30310791 GATCGAGGGTTGTGGCAGTGGGACCGG
131 GACCGAGGGTTGTGGCAGCGAGA-CTG
* * * * * * *
30310818 CAGCACGCAGAAGGGGATCGGGCTGATCC-CAGCTTGCGTATTATGCCTCTTCAGCCGGTTCAGC
1 CAGCACGCAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTC-TCGGTCGGCTCAGC
* * ***
30310882 GCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-AATAG
64 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG
* * **
30310945 ATCGGATCGAGGGTTACGGCAGCCG-GA-T-
128 -CCGGACCGAGGGTTGTGGCAG-CGAGACTG
* * * * * *
30310973 CAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCAGTCGGTTAAGGG
1 CAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCT-CGGTCGGCTCAGCG
* * *
30311038 CCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * *
30311103 GGACTGAAGGTTGTGGCAGCAAGACTGG
130 GGACCGAGGGTTGTGGCAGCGAGACT-G
* ** * *
30311131 CAGCACGTAGAGGGGGA-CTGGGCTAATCCTCGGCTTACGCATTATGCCTCTTCGGTCGACTCAG
1 CAGCACGCAG-GGGGGATC-GGGCCGATCCTCGGCTTGCGCATTATGCCTC-TCGGTCGGCTCAG
* * * * *
30311195 CACTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
63 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
30311242 CCCCAATCTA
Statistics
Matches: 476, Mismatches: 89, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
154 18 0.04
155 106 0.22
156 4 0.01
157 107 0.22
158 118 0.25
159 122 0.26
160 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
CAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCGGTCGGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GACCGAGGGTTGTGGCAGCGAGACTG
Found at i:30311095 original size:313 final size:313
Alignment explanation
Indices: 30310664--30311241 Score: 793
Period size: 313 Copynumber: 1.8 Consensus size: 313
30310654 AGATCTGCAA
* * * * *
30310664 CACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCGGTCGGCTGAGCGCTCG
1 CACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCAGTCGGCTAAGCGCCCG
* * * *
30310729 CATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-
66 CACGCCCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* *** * *
30310793 TCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAAGGGGA-TCGGGCTGATCC-CAGCTTGCG
131 T-GAAGGTTGTGGCAGCAAGACCGGCAGCACGCAGAAGGGGACT-GGGCTAATCCTCAGCTTACG
* ** * * * *
30310856 TATTATGCCTCTTCAGCCGGTTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGG
194 CATTATGCCTCTTCAGCCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
30310921 AGTTCATTCCTAGTCTAAGAATAGATCGGATCGAGGGTTACGGCAGCCGGATCAG
259 AGTTCATTCCTAGTCTAAGAATAGATCGGATCGAGGGTTACGGCAGCCGGATCAG
* * *
30310976 CACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCAGTCGGTTAAGGGCCC
1 CACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCT-CAGTCGGCTAAGCGCCC
* * *
30311041 GCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
65 GCACGCCCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * *
30311106 CTGAAGGTTGTGGCAGCAAGACTGGCAGCACGTAGAGGGGGACTGGGCTAATCCTCGGCTTACGC
130 CTGAAGGTTGTGGCAGCAAGACCGGCAGCACGCAGAAGGGGACTGGGCTAATCCTCAGCTTACGC
* * *
30311171 ATTATGCCTCTTCGGTCGACTCAGCACTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGA
195 ATTATGCCTCTTCAGCCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGA
30311236 GTTCAT
260 GTTCAT
30311242 CCCCAATCTA
Statistics
Matches: 227, Mismatches: 35, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
312 44 0.19
313 112 0.49
314 71 0.31
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (313 bp):
CACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCAGTCGGCTAAGCGCCCG
CACGCCCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
TGAAGGTTGTGGCAGCAAGACCGGCAGCACGCAGAAGGGGACTGGGCTAATCCTCAGCTTACGCA
TTATGCCTCTTCAGCCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAG
TTCATTCCTAGTCTAAGAATAGATCGGATCGAGGGTTACGGCAGCCGGATCAG
Found at i:30311263 original size:26 final size:26
Alignment explanation
Indices: 30311227--30311279 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30311217 GTTGACTTAG
30311227 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
30311253 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
30311279 G
1 G
30311280 ATAGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:30318208 original size:26 final size:26
Alignment explanation
Indices: 30318178--30318229 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30318168 GTTGACTTAG
30318178 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30318204 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30318230 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30318399 original size:26 final size:26
Alignment explanation
Indices: 30318363--30318415 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30318353 GTTGGCTTAG
30318363 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
30318389 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30318415 G
1 G
30318416 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30319127 original size:26 final size:26
Alignment explanation
Indices: 30319098--30319149 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30319088 GTTAACTTAG
30319098 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
30319124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30319150 TATTAGACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30319319 original size:26 final size:26
Alignment explanation
Indices: 30319283--30319361 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
30319273 GTTGGCTTAG
30319283 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30319309 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
30319335 GCATATGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
30319361 G
1 G
30319362 ATTTTGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 1 0.02
26 50 0.98
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30319452 original size:11 final size:11
Alignment explanation
Indices: 30319438--30319463 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30319428 CACCATCATC
30319438 GGAGCATCGTT
1 GGAGCATCGTT
30319449 GGAGCATCGTT
1 GGAGCATCGTT
30319460 GGAG
1 GGAG
30319464 AGCCTAACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.42, T:0.23
Consensus pattern (11 bp):
GGAGCATCGTT
Found at i:30320009 original size:945 final size:942
Alignment explanation
Indices: 30318363--30321202 Score: 4550
Period size: 945 Copynumber: 3.0 Consensus size: 942
30318353 GTTGGCTTAG
30318363 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
* *
30318428 GGTGTGCATACTGAGGTCGGGCATGTGTTGGTGCCGCATTTTTTTCACCCGGGGCACCATCGTCG
66 GGTGTGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCCCGGGGCACCATC-TCG
* *
30318493 GAGCATCGTTGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGG
130 GAGCATCGTTGGAGCATCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTCCG-TGATT-GGGGG
30318558 GCCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
193 GCCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
30318623 ATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
258 ATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
30318688 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCA
*
30318753 CTTCGAGTTTTTAATTGAATTGTTTTATGCATGCCAACAAAAATACAGGGATCACCTCTACCAAT
388 CTTCGAGTTTTTAATTGAATTGTTTTATGCATGCCAAAAAAAATACAGGGATCACCTCTACCAAT
30318818 TTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAAT
453 TTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAAT
* *
30318883 CATGAAAAATAGAAAACGGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGT
518 CGTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGT
* *
30318948 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAACATGTTCTTGAACCCAC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCAC
* * * * *
30319013 CTATCACCCATTCGATCCCCGGCTTGCGCATCCTGTCTCTCTGGTCGGCTAACCGCCCGCACGCT
648 CTACCACCCGTTCGATCCCTGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCGCCCGCACGCT
* *
30319078 CGTTCCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
713 CGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
30319143 AGTCTAATATTAGACTGGACTGCACGTTGTGGTAGCAGGATCGACAGCACGTAGGGGTAGACCGG
778 AGTCTAATATCAGACTGGACTGCACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGACCGG
30319208 ACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGG
843 -CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGG
30319273 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
907 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
30319309 GCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
*
30319374 GGTGTGCATACTGAGCTCGGGCATGTGTTGGTGCCGTATTTTTTTCGCCCGGGGCACCATCATCG
66 GGTGTGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCCCGGGGCACCATC-TCG
*
30319439 GAGCATCGTTGGAGCATCGTTGGAGAGCCTAACCGACGGCATTGGGGGTTCCAGTGATTGGGGGG
130 GAGCATCGTTGGAGCATCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTCC-GTGATTGGGGGG
30319504 CCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
194 CCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
30319569 TCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTG
259 TCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
*
30319634 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCAC
* *
30319699 TTCGAGTTTTTAATTGAATTGTTTTGTGCATGCCAAAAAAAATACAGGGATCACCTCTACCAAAT
389 TTCGAGTTTTTAATTGAATTGTTTTATGCATGCCAAAAAAAATACAGGGATCACCTCTACCAATT
**
30319764 TTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAAAGACAAAAAGTTTCAAAAATC
454 TTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATC
30319829 GTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTA
519 GTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTA
* * * **
30319894 TGAATTTACAAGCCATAAAAATGGCATTCGTATGGCAGAAATATGAAGACGTGCTTGAACCTGCC
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACC
* *
30319959 TACCACCCGTTCGATCCCTGGCTTGCGCATCCTGCCTTTCTGGTCGGCTAAGCGCCCGTACGCTC
649 TACCACCCGTTCGATCCCTGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCGCCCGCACGCTC
30320024 GTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
714 GTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
30320089 GTCTAATATCAGA-TCGGACTACATGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCAG
779 GTCTAATATCAGACT-GGACTGCACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGA-CCG
* * * * * *
30320153 GCTGATCCTCGGCTTGCCCATTCTGCCTCTTCGATCGGCTGAGCACCCACACGCTCGTTTTGTGG
842 GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGG
30320218 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
907 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** *
30320254 GCATATAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
* *
30320319 GGTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCTCGGGG-------T---
66 GGTGTGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCCCGGGGCACCATCTCGG
*
30320374 A-C--C------G--TCGTCGGAGAGCCTAACTGACGGCATTGGGGGTTCCGGTGATTGGGGGTG
131 AGCATCGTTGGAGCATCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTCC-GTGATTGGGGG-G
* * *
30320428 TCGAGGGGGTGTGCATACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTA
194 CCGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** * *
30320493 TCCCTCATCAAATGTCGAGAACTCGCACCTCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
30320558 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCAC
*
30320623 TTCGAGTTTTTAATTGAATTGTTTTATGCATGCCAATAAAAATACAGGGATCACCTCTACCAATT
389 TTCGAGTTTTTAATTGAATTGTTTTATGCATGCCAAAAAAAATACAGGGATCACCTCTACCAATT
* *
30320688 TTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCTCGAACCACAAAAAGTTTCAAAAATT
454 TTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATC
*
30320753 GTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGAAACATTGTA
519 GTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTA
30320818 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACC
584 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACC
*
30320883 TACCACCCGTTCGAT-CCTCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGTGCCCGCACGCT
649 TACCACCCGTTCGATCCCT-GGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCGCCCGCACGCT
* *
30320947 CGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTC
713 CGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * ** * * * * * * *
30321012 AGTCTAAGATCAGACTGGACCG-AGGGATACGACAGTAGGATCGGC-GCATGCAGGGG-GGGCCA
778 AGTCTAATATCAGACTGGACTGCA-CGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGACC-
* * ** ** * *
30321074 GGGCGATCCCTGGCTTATGCATTCTGAGTCTCCGGTCGG-TAGAGCAG-CCGCACGCTCGTTTCG
841 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT-GAGC-GCCCACACGCTCGTTTCG
* *
30321137 TGGGTTGGCTTAGGCATACAGATTTCATTCCATGTCTAA
904 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
30321176 GCATACGGAGTTCATTCTCA-GTCTAAG
1 GCATACGGAGTTCATTC-CATGTCTAAG
30321203 ATTGGACAGG
Statistics
Matches: 1768, Mismatches: 115, Indels: 46
0.92 0.06 0.02
Matches are distributed among these distances:
921 2 0.00
922 106 0.06
923 60 0.03
924 585 0.33
925 2 0.00
931 1 0.00
933 1 0.00
934 1 0.00
937 1 0.00
944 1 0.00
945 825 0.47
946 182 0.10
947 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (942 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTTTGAGCCAC
GGTGTGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCCCGGGGCACCATCTCGG
AGCATCGTTGGAGCATCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGTGATTGGGGGGCC
GAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCACTT
CGAGTTTTTAATTGAATTGTTTTATGCATGCCAAAAAAAATACAGGGATCACCTCTACCAATTTT
GGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTA
CCACCCGTTCGATCCCTGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGCGCCCGCACGCTCGT
TCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAATATCAGACTGGACTGCACGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGACCGGCCG
ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:30320072 original size:26 final size:26
Alignment explanation
Indices: 30320043--30320094 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30320033 GTTGACTTAG
30320043 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30320069 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30320095 TATCAGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30320264 original size:26 final size:26
Alignment explanation
Indices: 30320228--30320306 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
30320218 GTTGGCTTAG
*
30320228 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
30320254 GCATATAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
30320280 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
30320306 G
1 G
30320307 ATTTTGAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:30320996 original size:26 final size:26
Alignment explanation
Indices: 30320967--30321019 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30320957 GTTGACTTAG
30320967 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
30320993 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30321019 G
1 G
30321020 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30321179 original size:26 final size:26
Alignment explanation
Indices: 30321150--30321202 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30321140 GTTGGCTTAG
*
30321150 GCATACAGATTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
30321176 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
30321202 G
1 G
30321203 ATTGGACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:30321675 original size:159 final size:159
Alignment explanation
Indices: 30321375--30321874 Score: 488
Period size: 159 Copynumber: 3.2 Consensus size: 159
30321365 AGTCTAAGCC
** ** * * * ** * * * *
30321375 TACGGAGTTCATTCCCTGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGTAGGATCAACAGCA
1 TACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTTATGGCAATAGGACCGACAGCA
* * * ** * *
30321440 TGCAG-GAGGGACC-GAGCCGATCCCCAGCTTGGTCATTCTGCCTCTCCGATCGATTGAGCACCC
66 CGCAGAGGGGGACCAG-GCCGATCCCCGGCTTGCCCATTCTGCCTCTCCGATCGACTAAGCACCC
* * * * *
30321503 ACATACCCATTTCGTGGGTTGGCTTAGGTA
130 GCATGCTCGTTTCGTGGGTTGGCTTAGGCA
* * * *
30321533 TAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTTGTGGTAGA-GGGACCGACAGC
1 TACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTTATGGCA-ATAGGACCGACAGC
* *
30321597 ACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCCCATTCTGCCTCTCCGATCGGCTAAGCACCC
65 ACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCCCATTCTGCCTCTCCGATCGACTAAGCACCC
*
30321662 GCACGCTCGTTTCGTGGGTTGGCTTAGGCA
130 GCATGCTCGTTTCGTGGGTTGGCTTAGGCA
* * * *
30321692 TACGAAGTTCATTCCATGTCTAAGTCCCAGCCGGATCGAGGGTTATGGCAATAGGACCGACAGCA
1 TACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTTATGGCAATAGGACCGACAGCA
* * * * * * * * * *
30321757 TGCAGAGGGGGACCGGGTCAATCCCCGG-TTTCGCATTATGCCTCTCTGACCGACTCAGCGA-CC
66 CGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCCCATTCTGCCTCTCCGATCGACTAAGC-ACCC
* * *
30321820 GAATGCTCGTTTTGTGGGTTGACTTAGGCA
130 GCATGCTCGTTTCGTGGGTTGGCTTAGGCA
*
30321850 TACGGAGTTCATTCCTAGTCTAAGC
1 TACGGAGTTCATTCCAAGTCTAAGC
30321875 ACGTGGAGTT
Statistics
Matches: 279, Mismatches: 58, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
158 127 0.46
159 151 0.54
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
TACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTTATGGCAATAGGACCGACAGCA
CGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCCCATTCTGCCTCTCCGATCGACTAAGCACCCG
CATGCTCGTTTCGTGGGTTGGCTTAGGCA
Found at i:30322220 original size:26 final size:26
Alignment explanation
Indices: 30322190--30322242 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30322180 GTTGGTTTAG
30322190 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30322216 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30322242 G
1 G
30322243 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30323124 original size:26 final size:26
Alignment explanation
Indices: 30323094--30323146 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30323084 GTTGGCTTAG
30323094 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
30323120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30323146 G
1 G
30323147 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30323342 original size:26 final size:26
Alignment explanation
Indices: 30323306--30323355 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
30323296 GACTTAGGCG
*
30323306 TACGAAGTTCATCCCCAGTCTAAGCA
1 TACGAAGTTCATCCCCAATCTAAGCA
* *
30323332 TACGGAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATCCCCAATCTAAG
30323356 ATCGAACCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAATCTAAGCA
Found at i:30323623 original size:159 final size:159
Alignment explanation
Indices: 30323414--30323831 Score: 471
Period size: 159 Copynumber: 2.6 Consensus size: 159
30323404 GGGACCGAGC
* * * ** * *
30323414 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGACTGAGCGTCTGCACGCCCGTTTCATGGGT
1 CGATCCTCGGCTTACGCATTCTGCCTCTCTGATCGACTAAGCACCCGCACGCTCGTTTCATGGGT
* * * * * *
30323479 TCACTTAGGAATACGGAGTTCATTCCAAGTCTAAGCCCCAATCGGACCTAGGGTTGTGGCAACGG
66 TGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCAAGGGTTATGGCAACAG
* * * *
30323544 GACCAGCAGCACGCAGAGGGGGATCAG-GT
131 GACCAGCAGAACCCAAAAGGGGA-CAGTGT
* * **
30323573 CGATCCTCGGCTTTCGCATTCTAG-CTCTCTGATCGGCTAAGCACCCGCACGCTCGTTTCATGCA
1 CGATCCTCGGCTTACGCATTCT-GCCTCTCTGATCGACTAAGCACCCGCACGCTCGTTTCATGGG
* * * *
30323637 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAACA
65 TTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCAAGGGTTATGGCAACA
** *
30323702 GGACTGGCAGAACCCAAAAGGGGACCGTGT
130 GGACCAGCAGAACCCAAAAGGGGACAGTGT
* * ** * * *
30323732 CGATCCTCGGCTCACGCATTATGCCTCTCTGATCGACGCAGCAGCCGAACGCTCATTTCATGGGT
1 CGATCCTCGGCTTACGCATTCTGCCTCTCTGATCGACTAAGCACCCGCACGCTCGTTTCATGGGT
* *
30323797 TGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAG
66 TGACTTAGGCATACGGAGTTCATTCCAAGTCTAAG
30323832 ATCAGACTGG
Statistics
Matches: 213, Mismatches: 43, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
158 3 0.01
159 209 0.98
160 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.23
Consensus pattern (159 bp):
CGATCCTCGGCTTACGCATTCTGCCTCTCTGATCGACTAAGCACCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCAAGGGTTATGGCAACAG
GACCAGCAGAACCCAAAAGGGGACAGTGT
Found at i:30323993 original size:26 final size:26
Alignment explanation
Indices: 30323964--30324016 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30323954 GTTGGCTTAG
30323964 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
30323990 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30324016 G
1 G
30324017 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30324212 original size:26 final size:26
Alignment explanation
Indices: 30324162--30324214 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30324152 GTTGACTTAG
* *
30324162 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
30324188 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
30324214 G
1 G
30324215 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:30324485 original size:157 final size:159
Alignment explanation
Indices: 30324252--30324626 Score: 465
Period size: 158 Copynumber: 2.4 Consensus size: 159
30324242 CAGGATCGGT
** *
30324252 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
1 AGCACGCAGAGGGGGATCGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
30324316 CCCACACACCCATTTTGTGGGTTGG-TTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCACACACCCATTTTGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
30324380 GGACTAAGGGTTGTGGCAGCGGGAGCGAC
131 GGACCAAGGATTGTGGCAGCGAGACCGAC
* *
30324409 AGCACGCAGAGGGGGA-CTGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCC-GCTGAGG
1 AGCACGCAGAGGGGGATC-GGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * * * *
30324472 GCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGT
65 ACCCACACACCCATTTTGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * **
30324537 TGGACCGAGGATTGTGGCAGCGAGACCGGT
130 CGGACCAAGGATTGTGGCAGCGAGACCGAC
* * * * *
30324567 AGCATGCAGAGGGGGATC-GAGCCAATCCCC-ATCTTTCGCGTTATGCCTCTCCGACCGGCT
1 AGCACGCAGAGGGGGATCGGA-CCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCT
30324627 CAACACCCGA
Statistics
Matches: 186, Mismatches: 25, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
157 42 0.23
158 140 0.75
159 4 0.02
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
CCCACACACCCATTTTGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
GGACCAAGGATTGTGGCAGCGAGACCGAC
Found at i:30324710 original size:857 final size:859
Alignment explanation
Indices: 30322943--30325147 Score: 2114
Period size: 857 Copynumber: 2.5 Consensus size: 859
30322933 CTAAGCACAT
** * ** * *
30322943 GGAGTTCATTCTTAGTCTAAGATTAGATTGGACTGAGGGTTACAGCAGC-AGGATCGATAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCA-CTAGGATCGATAGCACG
* * * * * *
30323007 CAGG-GGGACCGAACCGATCCCTGGCCTGTGCATTCTACCTTTCTGGCCGGCTGAGCGCCCGCAC
65 TAGGAGGGACCGAGCCGGTCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCAC
*
30323071 GCTCA-TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
130 GCT-AGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * *
30323135 TCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAGGACCAGCAGCAGGATCTGCATCA
194 TCCCAGTCTAAGATCGGACTGGACCGAGGGTT---------GGA-CAGCAGCAGGATCTGCAGCA
* * * * * *
30323200 CGCAGGAGGGATCGGGCCGATCCCTAGCTTACGCATTCTGCCTCTTCGACCGACCTCTCCAGCCG
249 CGCAGGAGGCAACAGGCCGATCCCTAGCTCACGCATTCTGCCTCTCCGACCGACCTATCCAGCCG
* * * ** *
30323265 GTTGAGTGGCCACACGCTTGTTTCTTGGGTTGACTTAGGCGTACGAAGTTCATCCCCAGTCTAAG
314 GCTGAGCGCCCACACGCTCATTTCTTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
* * * * * *
30323330 CATACGGAGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTTGCGATAGTAGGATCAATCG
379 CATACAGAGTTCATTCCCAATCTAAGATCGAACAGAACCGAGGGTCGCGACAGCAGGATCAATAG
* * ** *
30323395 CACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGACTGAGCGTCT
444 CACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCC
* * * * *
30323460 GCACGCCCGTTTCATGGGTTCACTTAGGAATACGGAGTTCATTCCAAGTCTAAGCCCCAATCGGA
509 ACACACCCATTTCATGGGTTCACTTAAGAATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGA
* * * *
30323525 CCTAGGGTTGTGGCAACGGGACCAGCAGCACGCAGAGGGGGATCAGGTCGATCCTCGGCTTTCGC
574 CCTAGGGTTGTGGCAACGGGACCAGCAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGC
* * * * *
30323590 ATTCTAGCTCTCTGATCGGCTAAGCACCCGCACGCTCGTTTCATGCATTGGCTTAGGCATACAGA
639 ATTCTAGCTCTCCGAGCCGCTAAGCACCCGCACGCCCATTTCATGCATTGGCTTAGGCATACAGA
* *
30323655 GTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAACAGGACTGGCAGAACCCAAA
704 GTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGATTATGGCAACAGGACCGGCAGAACCCAAA
* * * * * * * * *
30323720 AGGGGACCGTGTCGATCCTCGGCTCACGCATTATGCCTCTCTGATCGACGCAGCAGCCGAACGCT
769 AGGGGACCGAGCCAATCCCCAGCTCACGCATTATGCCTCTCCGACCGACGCAACACCCGAACGCT
*
30323785 CATTTCATGGGTTGACTTAGGCATAC
834 CATTTCATGGGTTGACGTAGGCATAC
* * * * *
30323811 GGAGTTCTTTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGATAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCACTAGGATCGATAGCACGT
* * * * * **
30323876 AGGATGGGACCGAGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGTGCCTACAC
66 AGGA-GGGACCGAGCCGGTCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCAC
30323941 GCTAGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
130 GCTAGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
*
30324006 CCCAGTCTAAGATCGGACTGGACCGAGGGTT-G-CAGCAGTAGGATCTGCAGCACGCAAGG-GGC
195 CCCAGTCTAAGATCGGACTGGACCGAGGGTTGGACAGCAGCAGGATCTGCAGCACGC-AGGAGGC
* ** * * * * *
30324068 AACTAGGTCGAT-CCTCAGCTCGTGCATTTTGCCTCTCCGATCGGCCTATCCGGTCGGCTGAGCG
259 AAC-AGGCCGATCCCT-AGCTCACGCATTCTGCCTCTCCGACCGACCTATCCAGCCGGCTGAGCG
** * * *
30324132 CCCGTACGCTCATTT-TATGTGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAG
322 CCCACACGCTCATTTCT-TGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAG
* * **
30324196 AGTTCATTCCCAATCTAAGATCGAATCAG-ACTGAGGGTCGCGGCAGCAGGATCGGTAGCACGCA
386 AGTTCATTCCCAATCTAAGATCGAA-CAGAACCGAGGGTCGCGACAGCAGGATCAATAGCACGCA
* * * *
30324260 GGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACAC
450 GGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCACACAC
** ** * * * *
30324325 CCATTTTGTGGGTT-GGTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CTAAG
515 CCATTTCATGGGTTCACTTAAGAATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCT-AG
* * *
30324388 GGTTGTGGCAGCGGGAGC-GACAGCACGCAGAGGGGGA-CTGGACCGATCCCCGACTTGCGCATT
579 GGTTGTGGCAACGGGACCAG-CAGCACGCAGAGGGGGATCAGG-CCGATCCCCGACTTGCGCATT
* ** ** ** **
30324451 CT-GCCTCTCCG-GCCGCTGAGGGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGT
642 CTAG-CTCTCCGAGCCGCTAAGCACCCGCACGCCCATTTCATGCATTGGCTTAGGCATACAGAGT
* ** * * * * * ** * *
30324514 TCATTCCATGTCTAAGCCCTAGTTGGACCGAGGATTGTGGCAGC-GAGACCGGTAGCATGCAGAG
706 TCATTCCATGTCTAAGCCCCAGCCGGACCAAGGATTATGGCAACAG-GACCGGCAGAACCCAAAA
* * ** * * * *
30324578 GGGGATCGAGCCAATCCCCATCTTTCGCGTTATGCCTCTCCGACCGGCTCAACACCCGAACGTTC
770 GGGGACCGAGCCAATCCCCAGCTCACGCATTATGCCTCTCCGACCGACGCAACACCCGAACGCTC
* *
30324643 GTTTCGTGGGTTGACGTAGGCATAC
835 ATTTCATGGGTTGACGTAGGCATAC
** * * *
30324668 GGAGTTCATTCCC-GATCTAAGATTGGACCGGACCGAGGGTTGCAGCACTTGGATCGACAGTACG
1 GGAGTTCATTCCCAG-TCTAAGATCAGACCGGACCGAGGGTTGCAGCACTAGGATCGATAGCACG
* * * * * *
30324732 TAGGAGGGGATCGGGCCGGTCCCTGGCTTGCGTATTCTGCCTCTCTGGCCTGCTGAGCACCCGCA
65 TAGGA-GGGACCGAGCCGGTCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
30324797 CGCTCGTTCCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCAT
129 CGCTAGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* ** ** * * *
30324862 TCCTAGTCTAAGATCGGACCAGATTGAGGGTTGCGATAGTAGGACCAGTAGTAGGATC-GATAGC
194 TCCCAGTCTAAGATCGGACTGGACCGA--G--G-G-T--T-GGA-CAGCAGCAGGATCTG-CAGC
* * ** ** * *
30324926 ACGCA-G-GGCGAGATCAGGCTGATCCCCAGCTTGCGCATTCTGCCTCT-TTAGCCGACCTCTCT
248 ACGCAGGAGGC-A-A-CAGGCCGATCCCTAGCTCACGCATTCTGCCTCTCCGA-CCGACCTATCC
* * * * * * * * * * *
30324988 GGCCGGCTGAGCACCCGCACGGTCGTTACGTGGGATGAGTTAGGCATACAAAGTTCTTCCCCAGT
309 AGCCGGCTGAGCGCCCACACGCTCATTTCTTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGT
* ** * * * *
30325053 CTAAGCACATGGAGTTCATTCCCAATCTAAGAT-GTAACCGGACCGAGGGTTGCGGCAGCAGGAT
374 CTAAGCATACAGAGTTCATTCCCAATCTAAGATCG-AACAGAACCGAGGGTCGCGACAGCAGGAT
** * * *
30325117 CGGTAGCATGCAGGGGGGACCGGGTCGATCC
438 CAATAGCACGCAGGGGGGACCGAGCCGATCC
30325148 GCACACCCAT
Statistics
Matches: 1091, Mismatches: 210, Indels: 71
0.80 0.15 0.05
Matches are distributed among these distances:
856 2 0.00
857 349 0.32
858 125 0.11
859 215 0.20
860 3 0.00
861 1 0.00
862 1 0.00
863 1 0.00
865 1 0.00
867 5 0.00
868 63 0.06
869 183 0.17
870 142 0.13
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (859 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCACTAGGATCGATAGCACGT
AGGAGGGACCGAGCCGGTCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACG
CTAGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACTGGACCGAGGGTTGGACAGCAGCAGGATCTGCAGCACGCAGGAGGCAA
CAGGCCGATCCCTAGCTCACGCATTCTGCCTCTCCGACCGACCTATCCAGCCGGCTGAGCGCCCA
CACGCTCATTTCTTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTC
ATTCCCAATCTAAGATCGAACAGAACCGAGGGTCGCGACAGCAGGATCAATAGCACGCAGGGGGG
ACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCACACACCCATTT
CATGGGTTCACTTAAGAATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCTAGGGTTGTG
GCAACGGGACCAGCAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTAGCTCTC
CGAGCCGCTAAGCACCCGCACGCCCATTTCATGCATTGGCTTAGGCATACAGAGTTCATTCCATG
TCTAAGCCCCAGCCGGACCAAGGATTATGGCAACAGGACCGGCAGAACCCAAAAGGGGACCGAGC
CAATCCCCAGCTCACGCATTATGCCTCTCCGACCGACGCAACACCCGAACGCTCATTTCATGGGT
TGACGTAGGCATAC
Found at i:30324850 original size:26 final size:26
Alignment explanation
Indices: 30324821--30324873 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30324811 GTTGGATTAG
30324821 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
30324847 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30324873 G
1 G
30324874 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30326104 original size:26 final size:26
Alignment explanation
Indices: 30326068--30326119 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30326058 GTTGACTTAG
30326068 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30326094 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30326120 TATTGGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30326604 original size:26 final size:26
Alignment explanation
Indices: 30326568--30326620 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30326558 GGTGGCTTAG
*
30326568 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
*
30326594 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
30326620 G
1 G
30326621 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:30326663 original size:12 final size:12
Alignment explanation
Indices: 30326646--30326688 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
30326636 GGGTTACGGT
30326646 AGCAGGACCAGC
1 AGCAGGACCAGC
* *
30326658 AGCAGGATCGGC
1 AGCAGGACCAGC
30326670 AGCAGGACCAGC
1 AGCAGGACCAGC
30326682 AGCAGGA
1 AGCAGGA
30326689 TCGACAGCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.33, C:0.28, G:0.37, T:0.02
Consensus pattern (12 bp):
AGCAGGACCAGC
Found at i:30326676 original size:24 final size:24
Alignment explanation
Indices: 30326646--30326697 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
30326636 GGGTTACGGT
*
30326646 AGCAGGACCAGCAGCAGGATCGGC
1 AGCAGGACCAGCAGCAGGATCGAC
30326670 AGCAGGACCAGCAGCAGGATCGAC
1 AGCAGGACCAGCAGCAGGATCGAC
30326694 AGCA
1 AGCA
30326698 CACAGGGGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.29, G:0.35, T:0.04
Consensus pattern (24 bp):
AGCAGGACCAGCAGCAGGATCGAC
Found at i:30327115 original size:159 final size:157
Alignment explanation
Indices: 30326868--30327328 Score: 516
Period size: 159 Copynumber: 2.9 Consensus size: 157
30326858 ATCGAAACGA
* ** * * *
30326868 GGTTGCGACAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTG
1 GGTTGCG-GAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTG
* * *
30326933 CCTCTCCGATCGGTTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
65 CCTCTCCGATCGGTTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
*
30326998 TCCATGTCTAAGCCCCAG-CCGGACCGAG
130 TCC-TGTCTAAGCACCAGACCGGACCGAG
* *
30327026 GTTTGC-G-GCAGTGAGTCTGACAGCACGCAGAGGGGGATCAGGCCGATCCCCAGCTTGCGCATT
1 GGTTGCGGAGCAG-GA-TC-GACAGCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTGCGCATT
* * * * * ** * *
30327089 ATGCCTCTCCGACCTGCTCAACGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
62 CTGCCTCTCCGATCGGTTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
* * * *
30327154 TAGTCCTAGTCTAAG-ATCAGACTGGACCGAG
127 CATTCCT-GTCTAAGCACCAGACCGGACCGAG
* * *
30327185 GGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGGTCGGGTCGATCCCCAGCTTGCGCATTCTG
1 GGTTGCGG-AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTG
* * * * *
30327250 CCTCTCTGATCGGTTGAGTGCCCGTGCGCTCATTTCATGGGTTGGCTTAGACATACCGAGTGCAT
65 CCTCTCCGATCGGTTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
30327315 TCCCTGTCTAAGCA
130 T-CCTGTCTAAGCA
30327329 TACAGAGTTC
Statistics
Matches: 246, Mismatches: 46, Indels: 21
0.79 0.15 0.07
Matches are distributed among these distances:
155 4 0.02
156 2 0.01
157 2 0.01
158 107 0.43
159 122 0.50
160 3 0.01
161 2 0.01
162 4 0.02
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
GGTTGCGGAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGC
CTCTCCGATCGGTTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
CCTGTCTAAGCACCAGACCGGACCGAG
Found at i:30327341 original size:26 final size:26
Alignment explanation
Indices: 30327301--30327352 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30327291 TTGGCTTAGA
* *
30327301 CATACCGAGTGCATTCCCTGTCTAAG
1 CATACAGAGTGCATTCCCAGTCTAAG
*
30327327 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTGCATTCCCAGTCTAAG
30327353 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTGCATTCCCAGTCTAAG
Found at i:30327393 original size:12 final size:12
Alignment explanation
Indices: 30327376--30327408 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
30327366 GAGGGTTGAG
30327376 GCAGCAGGACCA
1 GCAGCAGGACCA
30327388 GCAGCAGGACCA
1 GCAGCAGGACCA
30327400 GCAGCAGGA
1 GCAGCAGGA
30327409 TTGACAGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.33, C:0.30, G:0.36, T:0.00
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:30328079 original size:887 final size:885
Alignment explanation
Indices: 30326667--30328283 Score: 2108
Period size: 887 Copynumber: 1.8 Consensus size: 885
30326657 CAGCAGGATC
* *
30326667 GGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGCCCAGGCTGATCCCCAACTTGTGC
1 GGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCTAATCCCCAACTTGTGC
* * * * * **
30326732 ATTCTGCCTTTCCGATCAACCTCTCCGGTCGACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGAC
66 ATTATGCCTCTCCGACCAACCTCTCCGGCCGACTGAGTGCCAGCACGCTCATTTCGTGGGTTGAC
* *
30326797 TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCAAGATCGAATCG
131 TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAATCAAGATCGAACCG
** * * * ** *
30326862 AAACGAGGTTGCGACAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGTGC
196 AAACGAGGTTGCGACAGCAGGATCGACAGCACGCAGGAGGGACCGAACCGATCCCCGACTTGTGC
* * ** * * *
30326927 ATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGA
261 ATTCTACCTCTCAGATCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGAA
* ** * * *
30326992 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGTTTGCGGCAGTGAGTCTGACAGCACGCAGA
326 GTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGATGCGGCAGCGAGACTGACAGCACGCAAA
* *
30327057 GGGGGATCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCTGCTCAACGCCCGTACGCT
391 GGGGGATCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCTGCTCAACACCCGAACGCT
* * * * * * **
30327122 CATTTCGTGGGTTGACTTAGGCATACGGAGTTTAGTCCTAGTCTAAGATCAGACTGGACCGAGGG
456 CATTTCATGGGTTAACTTAGACAAACGGAGTTCAGTCCCAGTCTAAGATCAGACTAAACCGAGGG
* * * * * * *
30327187 TTGCGGTAGCAGGATCGACAGCATGCAGGGGGGGTCGGGTC-GATCCCCAGCTTGCGCATTCTGC
521 TTGCGGCAGCAAGATCAACAGCATGCAGGGGGGATCGAGCCAG-TCCCCAGCTTGCGCATTCTAC
* * * **
30327251 CTC-TCTGATCGGTTGAGTGCCCGTGCGCTCATTTCATGGGTTGGCTTAGACATACCG-AGTGCA
585 CTCTTC-GACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGACATA-CGAAGTGCA
* * * * * *
30327314 TTCCCTGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGAGGCA
648 TTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAATCAAGGGTTGAGACA
30327379 GCAGGACCAGCAGCAGGACCAGCAGCAGGATTGACAGCACGTAGGGGGGACCGATCCTCGACTTG
713 GCAGGACCAGCAGCAGGACCAGCAGCAGGATTGACAGCACGTAGGGGGGACCGATCCTCGACTTG
30327444 CGTATTCTTCCTCTTCGGTCGGCTGAGCACCTGTACGCTCATTTTTTGGGTTGGCTTAGGCATAC
778 CGTATTCTTCCTCTTCGGTCGGCTGAGCACCTGTACGCTCATTTTTTGGGTTGGCTTAGGCATAC
30327509 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGT
843 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGT
* ** * *
30327552 GGCAGCAGGACC-GACAGCGGGATCGGTAGCACGCAGAGGGGGACCAGGCTAATCCCCGACTTGT
1 GGCAGCAGGACCAG-CAGCAGGATCGACAGCACACAG-GGGGGACCAGGCTAATCCCCAACTTGT
* * * *
30327616 GCATTATGCCTCTCCGGCCGAA-CTCTCCGGCCGGCTGAGTGCTAGCACGCTCATTTCGTGTGTT
64 GCATTATGCCTCTCCGACC-AACCTCTCCGGCCGACTGAGTGCCAGCACGCTCATTTCGTGGGTT
** *
30327680 GACTTAGGCATACGGAGTTCATCCTTAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGA
128 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAATC-AAGATCGA
* * **
30327745 ACCAGACCAA-G-GGTTGCGATAGCAGGATTGACAGCACGCAGGAGGGACCGAATTGATCCCCGA
192 ACC-GA--AACGAGGTTGCGACAGCAGGATCGACAGCACGCAGGAGGGACCGAACCGATCCCCGA
*
30327808 CTTGTGCATTCTACCTCTCTAGCT-GACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGG
254 CTTGTGCATTCTACCTCTC-AGATCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGG
* * *
30327872 CATACGAAGTTCATTCCATGTCTAA-CCCTAACCGGACCGAGGGATGTGGCAGCGGGACTGACAG
318 CATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGATGCGGCAGCGAGACTGACAG
* ** * * *
30327936 CACGCAAAGGGGGATC-GGACGGAT-CCTTGCCTTGCGTATTATGCCTCTCCGA-TTGGCTCAGC
383 CACGCAAAGGGGGATCAGG-CCGATCCCCAG-CTTGCGCATTATGCCTCTCCGACCT-GCTCAAC
* * *
30327998 ACCCGAACGCTCATTTCATGGGTTAACTTTGACAAACGGAGTTCATTCCCAGTCTAAGATCGGA-
445 ACCCGAACGCTCATTTCATGGGTTAACTTAGACAAACGGAGTTCAGTCCCAGTCTAAGATCAGAC
*
30328062 TCAAACCGAGGGTTGCGGCAGCAAGATCAACAGCATGCAGGGGGGATCGAGCCAGTCCCCGGCTT
510 T-AAACCGAGGGTTGCGGCAGCAAGATCAACAGCATGCAGGGGGGATCGAGCCAGTCCCCAGCTT
* * * * * *
30328127 GTGCATTCTACCTCTTCGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
574 GCGCATTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGACATA
* *
30328192 CGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCAAGG
639 CGAAGTGCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAATCAAGG
* *
30328257 GTTGCGACAGCAGGACTAGCAGCAGGA
704 GTTGAGACAGCAGGACCAGCAGCAGGA
30328284 TCGGTAGCAC
Statistics
Matches: 617, Mismatches: 100, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
884 1 0.00
885 30 0.05
886 135 0.22
887 323 0.52
888 123 0.20
889 3 0.00
890 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (885 bp):
GGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCTAATCCCCAACTTGTGC
ATTATGCCTCTCCGACCAACCTCTCCGGCCGACTGAGTGCCAGCACGCTCATTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAATCAAGATCGAACCG
AAACGAGGTTGCGACAGCAGGATCGACAGCACGCAGGAGGGACCGAACCGATCCCCGACTTGTGC
ATTCTACCTCTCAGATCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGAA
GTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGATGCGGCAGCGAGACTGACAGCACGCAAA
GGGGGATCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCTGCTCAACACCCGAACGCT
CATTTCATGGGTTAACTTAGACAAACGGAGTTCAGTCCCAGTCTAAGATCAGACTAAACCGAGGG
TTGCGGCAGCAAGATCAACAGCATGCAGGGGGGATCGAGCCAGTCCCCAGCTTGCGCATTCTACC
TCTTCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGACATACGAAGTGCATTC
CATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAATCAAGGGTTGAGACAGCA
GGACCAGCAGCAGGACCAGCAGCAGGATTGACAGCACGTAGGGGGGACCGATCCTCGACTTGCGT
ATTCTTCCTCTTCGGTCGGCTGAGCACCTGTACGCTCATTTTTTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGT
Found at i:30328237 original size:26 final size:26
Alignment explanation
Indices: 30328187--30328239 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30328177 GTTGGCTTAG
*
30328187 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
30328213 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
30328239 G
1 G
30328240 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:30328929 original size:26 final size:26
Alignment explanation
Indices: 30328890--30328942 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30328880 GTTGGCTTAG
*
30328890 GCATACGGAATTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
*
30328916 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
30328942 G
1 G
30328943 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:30328963 original size:703 final size:704
Alignment explanation
Indices: 30327503--30329027 Score: 1695
Period size: 710 Copynumber: 2.2 Consensus size: 704
30327493 GTTGGCTTAG
** * * * *
30327503 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATTGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGAATGAGGGTTGCGACAGCAGGACCGA
* * ** * *
30327566 CAGCGGGATCGGTAGCACGCAGAGGGGGACCAGGCTAATCCCCGACTTGTGCATTATGCCTCTCC
64 CAGC-GGATCGGTAGCACGCA-AGGGGGACCAGGCCAATCCCCGGCTTGCACATTATACATCTCC
** * *
30327631 GGCCGAACTCTCCGGCCGGCTGAGTGCTAGCACGCTCATTTCGTGTGTTGACTTAGGCATACGGA
127 GGCCGAACTCTCCGGCCGGCTGAGCACCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
** * **
30327696 GTTCATCCTTAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTG
192 GTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAACCTAAGATCGAACCAGACCAAGGGTTG
* * * *
30327761 CGATAGCAGGATTGACAGCACGCAGGAGGGACCGAATTGATCCCCGACTTGTGCATTCTACCTCT
257 CGACAGCAGCATTGACAGCACGCAGGAGGGACCGAACTGATCCCCGACTTGCGCATTCTACCTCT
* *
30327826 CTAGCTGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
322 CCAGCCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
* * * *
30327891 GTCTAACCCTAACCGGACCGAGGGATGTGGCAGCGGGACTGACAGCACGCAAAGGGGGATCGGAC
387 GTCTAACCCTAACCGAACCGAGGGATGTGGCAGCGGAACTGACAACACGCAAAGGGGGACCGGAC
** * * * *** *
30327956 GGATCCTTGCCTTGCGTATTATGCCTCTCCGATTGGCTCAGCACCCGAACGCTCATTTCATGGGT
452 GGATCCCCGACTTGCGCATTATGCCTCTCAGACCAGCTCAGCACCCGAACACTCATTTCATGGGT
* * *
30328021 TAACTTTGACAAACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCAA
517 TAACTTAGACAAACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGA-GGTTAC-GCAG--A
* * * * ** * * *
30328086 GATCAACAGCATGCAGGGGGGATCGAGCCAGTCCCCGGCTTGTGCATTCTACCTCTTCGGCCTGC
578 GATCAACAGCACGCAAGAGGGATCGAGCCACTCCCCGGCTTACGCATTCTACCTCTCCGACCGGC
*
30328151 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
643 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * *
30328213 GCATACGGAGTTCATTCCCAATCTAAGATCAGACC-GAATCAAGGGTTGCGACAGCAGGA-CTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAT-GAGGGTTGCGACAGCAGGACCGA-
* * *
30328276 CAGCAGGATCGGTAGCACGCAAGGGAGGACCGGGCCAATCCCCGGCTTGCACATTCTACATCTTC
64 CAGC-GGATCGGTAGCACGCAAGGG-GGACCAGGCCAATCCCCGGCTTGCACATTATACATCTCC
* * ** * * *
30328341 GGCCGACCTCTCTGGTTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGA
127 GGCCGAACTCTCCGGCCGGCTGAGCACCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* ** *
30328406 GTTCATCCCCAGTCTAAGCATACGGAGTAT-ATTCCCAACCTAAGAT-GTAA-TGGACTGAA-GG
192 GTTCATCCCCAGTCTAAGCATACGAAGT-TCATTCCCAACCTAAGATCG-AACCAGAC-CAAGGG
* * * * ** ** * *
30328467 TTGCGGCAGTAGCATTGGCAGCACGCAGGGGGGATTGGGCTGATCCCC-AGCTTGCGCATTTTGC
254 TTGCGACAGCAGCATTGACAGCACGCAGGAGGGACCGAACTGATCCCCGA-CTTGCGCATTCTAC
* * * *
30328531 CTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTATAGGCATAGGGAGTTCA
318 CTCTCCAGCCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGC-T-TAGGCATACGAAGTTCA
* * * * *
30328596 TTCCATGTCTAAGCCC-CACCGAATCGAGGGTTGTGGCAGCTGGAAC-GACAACA-GTCAGATGG
381 TTCCATGTCTAA-CCCTAACCGAACCGAGGGATGTGGCAGC-GGAACTGACAACACG-CAAAGGG
*
30328658 GGACC-GAGCTGATCCCCGACTTGCGCATTATGCCTCTCTAG-CCAGCTCAGCACCCGAACACTC
443 GGACCGGA-CGGATCCCCGACTTGCGCATTATGCCTCTC-AGACCAGCTCAGCACCCGAACACTC
* * * *
30328721 ATTT-AGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-G-
506 ATTTCA-TGGGTTAACTTAGACAAACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGT
** * * *
30328783 TAC-CAG-GATTGACAGCACGCAAGAGGGATCGGGTCACTCCCCGGCTTACGCATTCTGCCTCTC
570 TACGCAGAGATCAACAGCACGCAAGAGGGATCGAGCCACTCCCCGGCTTACGCATTCTACCTCTC
* *
30328846 CGATCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAA-TTCATTCCAT
635 CGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCATTCCAT
30328910 GTCTAA
699 GTCTAA
* * *
30328916 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAAGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAATGAGGGTTGCGACAGCAGGACCGACA
*** * *
30328981 GTCGGATCAACAGCACGCAGGGGGGACCAGGCCAATCCTCGGCTTGC
66 G-CGGATCGGTAGCACGCAAGGGGGACCAGGCCAATCCCCGGCTTGC
30329028 TTCGGCACGT
Statistics
Matches: 680, Mismatches: 114, Indels: 50
0.81 0.14 0.06
Matches are distributed among these distances:
702 22 0.03
703 175 0.26
704 9 0.01
706 3 0.00
708 3 0.00
709 108 0.16
710 190 0.28
711 162 0.24
712 8 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (704 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAATGAGGGTTGCGACAGCAGGACCGACA
GCGGATCGGTAGCACGCAAGGGGGACCAGGCCAATCCCCGGCTTGCACATTATACATCTCCGGCC
GAACTCTCCGGCCGGCTGAGCACCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAACCTAAGATCGAACCAGACCAAGGGTTGCGAC
AGCAGCATTGACAGCACGCAGGAGGGACCGAACTGATCCCCGACTTGCGCATTCTACCTCTCCAG
CCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
AACCCTAACCGAACCGAGGGATGTGGCAGCGGAACTGACAACACGCAAAGGGGGACCGGACGGAT
CCCCGACTTGCGCATTATGCCTCTCAGACCAGCTCAGCACCCGAACACTCATTTCATGGGTTAAC
TTAGACAAACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGTTACGCAGAGATCAACA
GCACGCAAGAGGGATCGAGCCACTCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:30329090 original size:26 final size:26
Alignment explanation
Indices: 30329061--30329112 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30329051 TTGACTTAGG
* *
30329061 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
30329087 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
30329113 AGATCGAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:30330427 original size:26 final size:26
Alignment explanation
Indices: 30330388--30330440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30330378 GTTGACTTAG
30330388 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30330414 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30330440 G
1 G
30330441 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30330438 original size:351 final size:339
Alignment explanation
Indices: 30330019--30330756 Score: 757
Period size: 342 Copynumber: 2.1 Consensus size: 339
30330009 CGTACGCTCA
* * * * * *
30330019 TTTCATGGGTTGGCTTCGACATACGGCGTTCATTCCATGTCCAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCCCAG
*
30330084 TCTAAGATC-GAACTGGA-TCGAGGGTTGCGGTAGCAGGACCAACAGCAGGATCGATAGACGCAA
65 TCTAAGATCAGAAC-GGACT-GAGGGTTGCGGTAACAGGACC--CA-CA-G--C----G-CGCAA
* * * * **
30330147 GGGGGATCTG-GCCGATCCCCGGCTTGCACATTCTGCCTTTCCGATCGGTTGAGTGCCCGCACGC
117 GGGGGA-C-GAGCCGATCCCCGGATTGCACATTCTGCCTTTCCAACCGGCTGAACGCCCGCACGC
* * * * * *
30330211 TTGTTTTGTGGGTTGGCTTAGGCATACGGA-CTTTCCATGTCTAAGCCCTAACCGGACCAAGGGT
180 CTGTTTCGTGGGTTGGCTTAGGCATACGGATCATTCCATGTCTAAGCCCCAACCGGAACAACGGT
* *
30330275 TGTGGCAGCAAGA-TCGACAGTACGCAAAAGGGGATCGGGCTAATCCCTGGCTTGCGCATTATAC
245 TGTGGCAGCAAGACT-GACAGCACGCAAAAGGGGATCGGGCCAATCCCTGGCTTGCGCATTATAC
* * * * ** **
30330339 GTTTTCAGTCGGTTGAGTGCCCGCACACTCG
309 CTCTTCAGTCGGCTCAACGCCCAAACACTCG
* *
30330370 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGATTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
30330435 TCTAAGATCAGATCGGACTGAGGGTTGTGGTAACAGGATCGACAGCGCGCAGGGGGGACGAGCCG
65 TCTAAGATCAGAACGGACTGAGGGTTGCGGTAACAGGACCCACAGCGCGCAAGGGGGACGAGCCG
* * *
30330500 ATCCCCGGATTGCGCATTCTGTCTTTCCAACCGGCTGAACGCCCGCATGCCTGTTTCGTGGGTTG
130 ATCCCCGGATTGCACATTCTGCCTTTCCAACCGGCTGAACGCCCGCACGCCTGTTTCGTGGGTTG
* * *
30330565 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAACAACGGTTGTGGCAGCAGGA
195 GCTTAGGCATACGGA--TCATTCCATGTCTAAGCCCCAACCGGAACAACGGTTGTGGCAGCAAGA
** * * * * * * *
30330630 CTGGTAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGGTGGGCT
258 CTGACAGCACGCAAAAGGGGATCGGGCCAATCCCTGGCTTGCGCATTATACCTCTTCAGTCGGCT
*
30330695 CAACGCCCAAACGCTCG
323 CAACGCCCAAACACTCG
** *
30330712 TTTCATGCATTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
30330757 ATTGGACTGG
Statistics
Matches: 322, Mismatches: 56, Indels: 27
0.80 0.14 0.07
Matches are distributed among these distances:
338 1 0.00
339 73 0.23
340 10 0.03
341 1 0.00
342 140 0.43
343 2 0.01
345 1 0.00
347 1 0.00
348 2 0.01
349 1 0.00
351 83 0.26
352 7 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (339 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCAGAACGGACTGAGGGTTGCGGTAACAGGACCCACAGCGCGCAAGGGGGACGAGCCGA
TCCCCGGATTGCACATTCTGCCTTTCCAACCGGCTGAACGCCCGCACGCCTGTTTCGTGGGTTGG
CTTAGGCATACGGATCATTCCATGTCTAAGCCCCAACCGGAACAACGGTTGTGGCAGCAAGACTG
ACAGCACGCAAAAGGGGATCGGGCCAATCCCTGGCTTGCGCATTATACCTCTTCAGTCGGCTCAA
CGCCCAAACACTCG
Found at i:30330925 original size:26 final size:26
Alignment explanation
Indices: 30330888--30330940 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30330878 GTTGGCTTAG
30330888 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30330914 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30330940 G
1 G
30330941 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30332378 original size:158 final size:156
Alignment explanation
Indices: 30332178--30332464 Score: 339
Period size: 158 Copynumber: 1.8 Consensus size: 156
30332168 CGACTGAGCG
* ** * * *
30332178 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAC-CCTAG-
1 CCCGAACGCCCATTTCGTGGGTTAACTTAGACAAACGAAGTTCATTCCCA-GTCTAACATC-AGA
* *
30332240 CCGGACCGAGGGATGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCC-GATCCCCGAC
64 CCGGACCGAGGGATGTGGCAGCAGGACCGACAGCA-GC--AGGGGGATCGAGCCAG-TCCCCGAC
30332304 TTGTGTATTATGCCTCTCCGATCGGCTCAGCA
125 TTGTGTATTATGCCTCTCCGATCGGCTCAGCA
* * * * * *
30332336 CCCGAACGCTCATTTCGTGGGTTAACTTTGACAAACGGAGTTCATTCCCAGTCTAAGATCGGATC
1 CCCGAACGCCCATTTCGTGGGTTAACTTAGACAAACGAAGTTCATTCCCAGTCTAACATCAGACC
* * *
30332401 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCAGCAGGGGGATCGAGCCAGTCCCCGGCTTGTG
66 GGACCGAGGGATGTGGCAGCAGGACCGACAGCAGCAGGGGGATCGAGCCAGTCCCCGACTTGTG
30332465 CATTCTACCT
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
156 25 0.23
157 1 0.01
158 47 0.44
159 35 0.32
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (156 bp):
CCCGAACGCCCATTTCGTGGGTTAACTTAGACAAACGAAGTTCATTCCCAGTCTAACATCAGACC
GGACCGAGGGATGTGGCAGCAGGACCGACAGCAGCAGGGGGATCGAGCCAGTCCCCGACTTGTGT
ATTATGCCTCTCCGATCGGCTCAGCA
Found at i:30332557 original size:26 final size:26
Alignment explanation
Indices: 30332520--30332572 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30332510 GTTGGCTTAG
30332520 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30332546 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30332572 G
1 G
30332573 ATCGACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30333252 original size:26 final size:26
Alignment explanation
Indices: 30333216--30333268 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30333206 GTTGGCTTAG
*
30333216 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30333242 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30333268 G
1 G
30333269 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30333422 original size:26 final size:26
Alignment explanation
Indices: 30333385--30333437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30333375 GTTGACTTAG
* *
30333385 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
30333411 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
30333437 G
1 G
30333438 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:30334771 original size:26 final size:26
Alignment explanation
Indices: 30334732--30334784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30334722 GTTGACTTAG
*
30334732 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30334758 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30334784 G
1 G
30334785 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30335610 original size:159 final size:158
Alignment explanation
Indices: 30335342--30335837 Score: 495
Period size: 158 Copynumber: 3.1 Consensus size: 158
30335332 GGTAGCACAC
** * * * * * * *
30335342 AGGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTACC-CTTTGGCCAGATGAGCGCCCGCATAC
1 AGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGCC-GGTTAGCGCCCG-A-AC
* * *
30335406 -CT-GTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGA
63 GCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGA
* *
30335469 GGGTTGTGGCAGTGGGACCGACAGCACGCAG
128 GGGTTGTGGCAGCGGGATCGACAGCACGCAG
* * * * *
30335500 AGGGGGACCGGGCCAATCCCC-AGCTTGCGCATTATGCCTC-TCTGGCTGGCTTAGTGCCCGAAT
1 AGGGGGACCGGGCCGATCCCCGA-CTTACGCATTATGCCTCTTC-GGCCGG-TTAGCGCCCGAAC
* * ** *
30335563 GCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATC
63 GCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGGACC
* * * * *
30335626 GAGGGTTGCGACAACAGGATCGACAGCACGCGG
126 GAGGGTTGTGGCAGCGGGATCGACAGCACGCAG
* * * * *
30335659 A-GGGGACCGGGTCGGTCCTCGACTTACGCATTTTGCCTCTTCGGCCGGTTAGCGCCCGTACGCT
1 AGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGTTAGCGCCCGAACGCT
* * *
30335723 CATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
66 CGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGG
* * * *
30335788 TTGTGGCAGCGAGATTGGCAGCACACAG
131 TTGTGGCAGCGGGATCGACAGCACGCAG
30335816 AGGGGGACCGGGCCGATCCCCG
1 AGGGGGACCGGGCCGATCCCCG
30335838 GTTTGCTCAT
Statistics
Matches: 268, Mismatches: 57, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 84 0.31
158 92 0.34
159 86 0.32
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
AGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGTTAGCGCCCGAACGCT
CGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGG
TTGTGGCAGCGGGATCGACAGCACGCAG
Found at i:30335767 original size:157 final size:159
Alignment explanation
Indices: 30335413--30335836 Score: 421
Period size: 157 Copynumber: 2.7 Consensus size: 159
30335403 TACCTGTTTC
* * * *
30335413 ATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGG
1 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACCGGACCGAGGGTTGCGA
*** *
30335478 CAGTGGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCT
66 CAACAGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTCT
* * * *
30335543 GGCTGGCTTAGTGCCCGAATGCTCGTTTA
131 GGCCGGCTTAGCGCCCGAACGCTCATTTA
* * * * *
30335572 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGC
1 ATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCACCA-ACCGGACCGAGGGTTGC
* * * ** * *
30335635 GACAACAGGATCGACAGCACGCGGA-GGGGACCGGGTCGGTCCTC-GACTTACGCATTTTGCCTC
64 GACAACAGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCAG-CTTACGCATTATGCCTC
* *
30335698 T-TCGGCCGG-TTAGCGCCCGTACGCTCATTTT
128 TCT-GGCCGGCTTAGCGCCCGAACGCTCATTTA
* ** * *
30335729 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
1 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACCGGACCGAGGGTTGCGA
* ** * * *
30335794 CAGC-GAGATTGGCAGCACACAGAGGGGGACCGGGCCGATCCCC
66 CAACAG-GACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCC
30335837 GGTTTGCTCA
Statistics
Matches: 215, Mismatches: 42, Indels: 17
0.78 0.15 0.06
Matches are distributed among these distances:
156 4 0.02
157 85 0.40
158 56 0.26
159 67 0.31
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (159 bp):
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACCGGACCGAGGGTTGCGA
CAACAGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTCT
GGCCGGCTTAGCGCCCGAACGCTCATTTA
Found at i:30336590 original size:26 final size:26
Alignment explanation
Indices: 30336561--30336613 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30336551 GTTTACTTAG
30336561 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
30336587 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30336613 G
1 G
30336614 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30336953 original size:26 final size:26
Alignment explanation
Indices: 30336904--30336956 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30336894 GTTGGCTTAG
**
30336904 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCAACCCATGTCTAA
30336930 GCATACGGAGTTCACACCCA-GTCTAA
1 GCATACGGAGTTCA-ACCCATGTCTAA
30336956 G
1 G
30336957 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCATGTCTAA
Found at i:30337044 original size:11 final size:11
Alignment explanation
Indices: 30337024--30337057 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
30337014 CGCCTAGGGC
*
30337024 ACCATTGCCGG
1 ACCATCGCCGG
30337035 ACCATCGCCGG
1 ACCATCGCCGG
30337046 ACCATCGCCGG
1 ACCATCGCCGG
30337057 A
1 A
30337058 GAGCCTAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.21, C:0.41, G:0.26, T:0.12
Consensus pattern (11 bp):
ACCATCGCCGG
Found at i:30337674 original size:26 final size:26
Alignment explanation
Indices: 30337638--30337690 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30337628 GTTGACTTAG
30337638 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30337664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30337690 G
1 G
30337691 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30338014 original size:26 final size:26
Alignment explanation
Indices: 30337978--30338029 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30337968 GTTGGCTTAG
30337978 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30338004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30338030 AATTCTAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30339295 original size:26 final size:26
Alignment explanation
Indices: 30339265--30339317 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30339255 GTTGACTTAG
30339265 GCATAC-GAAGTTCA-TCCCTAGTCTAA
1 GCATACAG-AGTTCATTCCC-AGTCTAA
30339291 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30339317 G
1 G
30339318 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30339798 original size:26 final size:26
Alignment explanation
Indices: 30339768--30339820 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30339758 GTTGGCTTAG
*
30339768 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
30339794 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30339820 G
1 G
30339821 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30340014 original size:26 final size:26
Alignment explanation
Indices: 30339978--30340028 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30339968 TTGACTTAGG
30339978 CATACGGAGTTCATACCCAGTCTAAC
1 CATACGGAGTTCATACCCAGTCTAAC
*
30340004 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATACCCAGTCTAA
30340029 GATCTAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATACCCAGTCTAAC
Found at i:30340368 original size:26 final size:26
Alignment explanation
Indices: 30340319--30340371 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30340309 GTTGGCTTAG
**
30340319 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCAACCCATGTCTAA
30340345 GCATACGGAGTTCACACCCA-GTCTAA
1 GCATACGGAGTTCA-ACCCATGTCTAA
30340371 G
1 G
30340372 AGTTTGACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCATGTCTAA
Found at i:30341060 original size:26 final size:26
Alignment explanation
Indices: 30341041--30341089 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30341031 GCATATGGAT
30341041 TTCATCCCCAGTCTAAGCATACGAAG
1 TTCATCCCCAGTCTAAGCATACGAAG
*
30341067 TTCATTCCCAGTCTAA-CAT-CGAA
1 TTCATCCCCAGTCTAAGCATACGAA
30341090 CCGGACCAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 3 0.14
26 15 0.68
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.27
Consensus pattern (26 bp):
TTCATCCCCAGTCTAAGCATACGAAG
Done.