Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 327 of 402
Found at i:30342034 original size:158 final size:158
Alignment explanation
Indices: 30341599--30342118 Score: 496
Period size: 158 Copynumber: 3.3 Consensus size: 158
30341589 CAATTGTGTG
* *
30341599 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
1 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
30341664 GGATCGAGCGTTACGATAGCAGGATCGACAGCACGTAGGGAGGATCGAGCTGATCCCCGGCTTAC
66 GGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGC
* * *
30341729 GA-ATTTTGCCTCTCCGGTCAACTGAGCA
131 -ACATTATGCCTCTCCGGTCGACTAAGCA
* * *
30341757 -CC-ACACG-TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCTCTA
1 CCCGA-ACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-A
* * * ** * * * * *
30341818 G-TCAGACTGAGGGTTGTGGTAGCGGGA-CTAGTAGCATGTAGAGGGGGACCGAGTCGATCCCCG
62 GACCGGACCGAGGGTTACGGTAGCAGGATCGA-CAGCACGTAG-GGGGGACCGAGCCGATCCCCG
* *
30341881 ACTTGCACATTATGCCTCTCCGGTCGGCTCAGCA
125 ACTTGCACATTATGCCTCTCCGGTCGACTAAGCA
* * * *
30341915 CCCGAATGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAATCTGAGATCAGACC
1 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
30341980 GGACCGAGGGTCACGGCAGTAAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGC
66 GGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGC
* * ** * *
30342045 GCATTCTGCCTCTAAGGCCGACTAAGCG
131 ACATTATGCCTCTCCGGTCGACTAAGCA
* * * *
30342073 CCCGCACACTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATT
1 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
30342119 ACATGTCTAA
Statistics
Matches: 285, Mismatches: 64, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 6 0.02
157 73 0.26
158 132 0.46
159 67 0.24
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGACCGAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGC
ACATTATGCCTCTCCGGTCGACTAAGCA
Found at i:30342132 original size:26 final size:25
Alignment explanation
Indices: 30342103--30342154 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
30342093 GTTGGCTTAG
*
30342103 GCATACGGAGTTCATTACATGTCTAA
1 GCATACGAAGTTCATTACA-GTCTAA
*
30342129 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTACAGTCTAA
30342154 G
1 G
30342155 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTACAGTCTAA
Found at i:30342725 original size:26 final size:26
Alignment explanation
Indices: 30342675--30342727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30342665 GTTGGCTTAG
* *
30342675 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
30342701 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
30342727 G
1 G
30342728 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:30343182 original size:13 final size:13
Alignment explanation
Indices: 30343164--30343188 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30343154 ACGCATTCTA
30343164 CCTCTTCGACTGG
1 CCTCTTCGACTGG
30343177 CCTCTTCGACTG
1 CCTCTTCGACTG
30343189 ATTGAGCACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.20, T:0.32
Consensus pattern (13 bp):
CCTCTTCGACTGG
Found at i:30343257 original size:26 final size:26
Alignment explanation
Indices: 30343227--30343279 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30343217 GTTGACTTAG
30343227 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
* *
30343253 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30343279 G
1 G
30343280 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30343596 original size:26 final size:26
Alignment explanation
Indices: 30343567--30343619 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30343557 GTTGGCTTAG
* *
30343567 GCATATGGAGTGCATTCCCTGTCTAA
1 GCATATGAAGTGCATTCCCAGTCTAA
*
30343593 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTGCATTCCCAGTCTAA
30343619 G
1 G
30343620 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTGCATTCCCAGTCTAA
Found at i:30344629 original size:26 final size:26
Alignment explanation
Indices: 30344593--30344645 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30344583 GTTGGCTTAG
30344593 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30344619 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30344645 G
1 G
30344646 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30345723 original size:26 final size:26
Alignment explanation
Indices: 30345675--30345727 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30345665 GTTGACTTAG
*
30345675 GCATATGGAGTTCATCCTCAGTCTAA
1 GCATATGGAGTTCATCCTAAGTCTAA
30345701 GCATATGGAGTTCATTCC-AAGTCTAA
1 GCATATGGAGTTCA-TCCTAAGTCTAA
30345727 G
1 G
30345728 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCTAAGTCTAA
Found at i:30346068 original size:26 final size:26
Alignment explanation
Indices: 30346018--30346070 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30346008 GTTGGCTTAG
* *
30346018 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
30346044 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
30346070 G
1 G
30346071 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:30346777 original size:26 final size:26
Alignment explanation
Indices: 30346740--30346792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30346730 GTTGACTTAG
30346740 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
30346766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
30346792 G
1 G
30346793 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30347066 original size:158 final size:157
Alignment explanation
Indices: 30346766--30347268 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 157
30346756 CCCAATCTAA
* * * * * ** *
30346766 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTACGATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGCAGGATAGA
* * * * *
30346829 CAGCATGTAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCG
65 TAGCATGTAGGGGGGACCGGGCCGATCCCCGGCTT-AGCATTCTGCCTCTCCGCT-GGCTGAGCG
* * * * *
30346894 CCCGTACACCCGTTTCCTGGGTTGGCTGAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
30346924 GCATAGGGAGTTCATTCTATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACT-GA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGCAGGA-TAGA
* * *
30346987 TAGCATGAAGAGGGGGA-CGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCAGCTGGCTCAGC
65 TAGCATGTAG-GGGGGACCGGGCCGATCCCCGGCTTA-GCATTCTGCCTCTCC-GCTGGCTGAGC
* *
30347051 ACCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * ** *
30347082 GCATACGAAATTCCTTCCCA-GTCTAAG-ATCGGATCGAATTGAGGGTTGCGGTAGCAGGATAGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGCAGGATAGA
* * * * * *
30347145 TAGCACGTAGGGGGGATCGGGCTGATCGCCGGCTTGAACATTCGGCCTCTCCGACTGGCTGAGCG
65 TAGCATGTAGGGGGGACCGGGCCGATCCCCGGCTT-AGCATTCTGCCTCTCCG-CTGGCTGAGCG
*
30347210 CCCTCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
30347240 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
30347269 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 55, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 15 0.05
158 245 0.89
159 16 0.06
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGCAGGATAGAT
AGCATGTAGGGGGGACCGGGCCGATCCCCGGCTTAGCATTCTGCCTCTCCGCTGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30347276 original size:26 final size:26
Alignment explanation
Indices: 30347240--30347292 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30347230 GTTGGCTTAG
30347240 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
30347266 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30347292 G
1 G
30347293 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30347655 original size:26 final size:26
Alignment explanation
Indices: 30347619--30347671 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30347609 AATGACTTAG
30347619 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
30347645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30347671 G
1 G
30347672 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30347995 original size:158 final size:158
Alignment explanation
Indices: 30347785--30348128 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 158
30347775 TGGTTAGCTT
* * * * **
30347785 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGTGGGATCGATGG
1 CATATGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGCGGTAGTAGGATCGACAG
* * * * ** * * * *
30347850 CAT-GCAGAGGGGGATCGGGCTGATCCCCGGCTTGTACATTATACCTCTTCG-GTCGGCTCAGCG
66 C-TCGCAG-GGGGGACCGAGCCGATCCCCAGCTTACACATTATACCTCTCCGACT-GGCTAAACG
* *
30347913 CC-GCACGCTCGTTTCGTGGGTTGACTTATG
128 CCGGCACGCTCGTTTCATGGGTTGACTTAGG
* * *
30347943 CATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGTAGTAGGATCGAC
1 CATATGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * *
30348006 AGCTCGCAGGGGGGACCGAGCCGATCCCTAGCTTACGCATTCTACCTCTCCGACTGGCTAAATGC
64 AGCTCGCAGGGGGGACCGAGCCGATCCCCAGCTTACACATTATACCTCTCCGACTGGCTAAACGC
*
30348071 CGGCACGCTCGTTTCATGGGTTGGCTTAGG
129 CGGCACGCTCGTTTCATGGGTTGACTTAGG
30348101 CATATGGAGTTCATTCCATGTCTAAGCA
1 CATATGGAGTTCATTCCATGTCTAAGCA
30348129 TACGGTGTTC
Statistics
Matches: 153, Mismatches: 26, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
157 48 0.31
158 101 0.66
159 4 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CATATGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGCGGTAGTAGGATCGACAG
CTCGCAGGGGGGACCGAGCCGATCCCCAGCTTACACATTATACCTCTCCGACTGGCTAAACGCCG
GCACGCTCGTTTCATGGGTTGACTTAGG
Found at i:30348130 original size:26 final size:26
Alignment explanation
Indices: 30348100--30348152 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30348090 GTTGGCTTAG
*
30348100 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30348126 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30348152 G
1 G
30348153 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30355170 original size:158 final size:158
Alignment explanation
Indices: 30354987--30355278 Score: 381
Period size: 158 Copynumber: 1.8 Consensus size: 158
30354977 GGGATCGGGT
* * * * * * * *
30354987 CGATCCCCGACTTGCGCATTATGCCTCTCCGACAGGCTCAGCGCCCGCACGTTCGTTTCGTGGGT
1 CGATCCACGACTTGCACATTATGCCTCCCCAACAGACTCAGCGCCCGCACGCTCATTTCATGGGT
*
30355052 TGACTTAGGCATACGGAGTTCATTCTCA-GTCT-AAGATCAGACCGGACCGAGGGTTGCAGTAGC
66 TGACTTAGGCATACGGAGTTCATTC-CATGTCTGAAGACCAG-CCGGACCGAGGGTTGCAGTAGC
30355115 AGGATCAACAGCACGTAGGGGGGATTGAGC
129 AGGATCAACAGCACGTAGGGGGGATTGAGC
* * * *
30355145 CGATCCACGGCTTGCACATTCTGCCTCCCCAACCGACTGAGCGCCCGCACGCTCATTTCATGGGT
1 CGATCCACGACTTGCACATTATGCCTCCCCAACAGACTCAGCGCCCGCACGCTCATTTCATGGGT
* * * * **
30355210 TGGCTTAGGCATACGGAGTTCATTCCATGTCTGAGGCCCAGTCGGACCGAGGGTTGTGGTAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCATGTCTGAAGACCAGCCGGACCGAGGGTTGCAGTAGCAG
30355275 GATC
131 GATC
30355279 GGCAGTACAC
Statistics
Matches: 113, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
157 2 0.02
158 106 0.94
159 5 0.04
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
CGATCCACGACTTGCACATTATGCCTCCCCAACAGACTCAGCGCCCGCACGCTCATTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCATGTCTGAAGACCAGCCGGACCGAGGGTTGCAGTAGCAG
GATCAACAGCACGTAGGGGGGATTGAGC
Found at i:30355426 original size:26 final size:26
Alignment explanation
Indices: 30355390--30355440 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30355380 GTTGACTTAG
*
30355390 GCATATGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
30355416 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAATCTA
30355441 TGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30355717 original size:110 final size:110
Alignment explanation
Indices: 30355537--30355744 Score: 353
Period size: 110 Copynumber: 1.9 Consensus size: 110
30355527 CTCTGACTGG
* * * *
30355537 CTGAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCCCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
30355602 CCCAGCCGGATAGAGGGTTGTGGCAGCGGGACCCTCTCCGGCCGA
66 CCCAGCCGGATAGAGGGTTGTGGCAGCGGGACCCTCTCCGGCCGA
*
30355647 CTGAGCGCCCGCACGCCCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGC
1 CTGAGCGCCCGCACGCCCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* *
30355712 CCCAGCTGGATCGAGGGTTGTGGCAGCGGGACC
66 CCCAGCCGGATAGAGGGTTGTGGCAGCGGGACC
30355745 GGTAGCACGC
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
110 91 1.00
ACGTcount: A:0.15, C:0.27, G:0.34, T:0.24
Consensus pattern (110 bp):
CTGAGCGCCCGCACGCCCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGCCGGATAGAGGGTTGTGGCAGCGGGACCCTCTCCGGCCGA
Found at i:30357366 original size:158 final size:157
Alignment explanation
Indices: 30357070--30357411 Score: 366
Period size: 158 Copynumber: 2.2 Consensus size: 157
30357060 CCCAATCTAA
* * *
30357070 GCATACGGAGTTCATTCCAGTCAAAGATCGGATCAGACGAGGGTTGCGGTAGTAGGATCGACAGC
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGATCAGACGAGGGTTGCGGTAGCAGGATCGACAGC
* * *
30357135 ACGTAAAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACGGAGCACCC
66 ACGTAAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACGAAGCACCC
*
30357200 GCACGCTCGTTTCCTA-GGTTGACTTAG
131 GCACGCTCGTTT-CGAGGGTTGACTTAG
* *
30357227 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATC-GAACCGAGGGTTGCGGTAGCATGATCGAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCAG-A-CGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * * *** * * *
30357291 AGCACG-CAGGGGGGACCGGGCCGGTCCCCAGCTTGTGCGTTCTGCCTCTTCGGTTGGCTAAGCG
63 AGCACGTAAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACGAAGCA
* * *
30357355 CTCGCATGCTCGTTTCGAGGGTTGTCTTAG
128 CCCGCACGCTCGTTTCGAGGGTTGACTTAG
* *
30357385 GCATATGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
30357412 CATACGGGGT
Statistics
Matches: 151, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
157 21 0.14
158 101 0.67
159 29 0.19
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCAGACGAGGGTTGCGGTAGCAGGATCGACAGC
ACGTAAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACGAAGCACCC
GCACGCTCGTTTCGAGGGTTGACTTAG
Found at i:30357552 original size:184 final size:184
Alignment explanation
Indices: 30357227--30357596 Score: 413
Period size: 184 Copynumber: 2.0 Consensus size: 184
30357217 GTTGACTTAG
* * * ** * *
30357227 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCATGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGATTGCGCAAGCAGGATCAACA
* * ** * * * * * *
30357292 GCACGCAGGGGGGACCGGGCCGGTCCCCAGCTTGTGCGTTCTGCCTCTTCGGTTGGCTAAGCGCT
66 GCACACAGGGGGGACCGGGCCAGTCCCCAGCTTGCACATTCTACCTCTTCGATCGACTAAGCGCC
* * * * * *
30357357 CGCATGCTCGTTTCGAGGGTTGTCTTAGGCATATGGAGTTTATTCCATGTCTAA
131 CGCACGCTCGTTTCGAGGGTAGGCCTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
30357411 GCATACGGGGTTCATTCCCAGTCTTAGATCAGACCGAACCGAGGATTGC-CAAGCAGGATCAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGATTGCGCAAGCAGGATCAACA
* * *
30357475 GCACACAAGGGGGGATCGGGCCA-TTCCCTGACTTGCACATTCTACCTCTTCGATCGACTGAA-C
66 GCACAC-AGGGGGGACCGGGCCAGTCCCCAG-CTTGCACATTCTACCTCTTCGATCGACT-AAGC
* *
30357538 GCCCGCACGCTCGTTTCGTGGGTAGGCCTAGGCATACGGAGTTCATTCCATGTTTAA
128 GCCCGCACGCTCGTTTCGAGGGTAGGCCTAGGCATACGGAGTTCATTCCATGTCTAA
30357595 GC
1 GC
30357597 CCCAGTCAAA
Statistics
Matches: 152, Mismatches: 31, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
183 21 0.14
184 129 0.85
185 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGATTGCGCAAGCAGGATCAACA
GCACACAGGGGGGACCGGGCCAGTCCCCAGCTTGCACATTCTACCTCTTCGATCGACTAAGCGCC
CGCACGCTCGTTTCGAGGGTAGGCCTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:30357789 original size:26 final size:26
Alignment explanation
Indices: 30357755--30357805 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30357745 TGACTTAGGT
*
30357755 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
30357781 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
30357806 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:30358071 original size:159 final size:156
Alignment explanation
Indices: 30357878--30358366 Score: 471
Period size: 159 Copynumber: 3.1 Consensus size: 156
30357868 CCCCAACCTG
* * * *
30357878 CGCATTCTGCCTCTCCGGCCGGCTGAGCATCCACACGTCCATTTCATGGGTAGGCTTAGGCATAG
1 CGCATTATGCCTCTCCGGTCGGCTGAGCACCCACACG-CCATTTCATGGGTTGGCTTAGGCATAG
30357943 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGCAGCGAGATCGGCAGCACAC
65 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGCAGCGAGATCGGCAGCACAC
30358008 AGCGGGGGACCAGGTTGATCCTTGGCTTA
130 AG-GGGGGACCAGGTTGATCC-TGGCTTA
* * * **
30358037 CGCATTATGCCTCTCCGGTCGACTGAGCACCCACATGCTAGTTTTCATGGGTTGATTTAGGCATA
1 CGCATTATGCCTCTCCGGTCGGCTGAGCACCCACACGCCA--TTTCATGGGTTGGCTTAGGCATA
* ** * * *** * *
30358102 CGGAGTTCATTCTCA-GTCTAAG-ATCAGACCGGACCAAAGGTTACAGCAGCAAGATCGGCAGTA
64 GGGAGTTCATTC-CATGTCTAAGCCCCAG-CCGGATCGAAGGTTGTGGCAGCGAGATCGGCAGCA
*
30358165 CACAGGGGGGACCAGGTCGATCCCTGGCTTA
127 CACAGGGGGGACCAGGTTGAT-CCTGGCTTA
* * * * * **** * * * *
30358196 TGCATTCTACCTTTCCGGTCGGCTGAGCGCTTGGACGCCCGTTTCGTGGGTTGGCTTAGACGTAG
1 CGCATTATGCCTCTCCGGTCGGCTGAGCACCCACACG-CCATTTCATGGGTTGGCTTAGGCATAG
* * * * *
30358261 GGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCG-AGGATTGTGGCAGCGGGACCGGCAGCACG
65 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGG-TTGTGGCAGCGAGATCGGCAGCACA
* * * *
30358325 TAGAGGGGGACTAGGCTGATTCCTGGCTTG
129 CAG-GGGGGACCAGGTTGA-TCCTGGCTTA
30358355 CGCATTATGCCT
1 CGCATTATGCCT
30358367 TTTCGATTGA
Statistics
Matches: 258, Mismatches: 61, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 61 0.24
159 115 0.45
160 75 0.29
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
CGCATTATGCCTCTCCGGTCGGCTGAGCACCCACACGCCATTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGCAGCGAGATCGGCAGCACACA
GGGGGGACCAGGTTGATCCTGGCTTA
Found at i:30358123 original size:160 final size:157
Alignment explanation
Indices: 30357878--30358425 Score: 456
Period size: 159 Copynumber: 3.5 Consensus size: 157
30357868 CCCCAACCTG
* * * * * *
30357878 CGCATTCTGCCTCTCCGGCCGGCTGAGCATCCACACGTCCA-TTTCATGGGTAGGCTTAGGCATA
1 CGCATTATGCCTCTCCGGTCGACTGAGCACCCACACG-CCAGTTTCATGGGTTGACTTAGGCATA
*
30357942 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGCAGCGAGATCGGCAGCACA
65 CGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGCAGCGAGATCGGCAGCACA
30358007 CAGCGGGGGACCAGGTTGATCCTTGGCTTA
130 CAG-GGGGGACCAGGTTGATCC-TGGCTTA
* * *
30358037 CGCATTATGCCTCTCCGGTCGACTGAGCACCCACATGCTAGTTTTCATGGGTTGATTTAGGCATA
1 CGCATTATGCCTCTCCGGTCGACTGAGCACCCACACGCCAG-TTTCATGGGTTGACTTAGGCATA
** * * *** * *
30358102 CGGAGTTCATTCTCA-GTCTAAG-ATCAGACCGGACCAAAGGTTACAGCAGCAAGATCGGCAGTA
65 CGGAGTTCATTC-CATGTCTAAGCCCCAG-CCGGATCGAAGGTTGTGGCAGCGAGATCGGCAGCA
*
30358165 CACAGGGGGGACCAGGTCGATCCCTGGCTTA
128 CACAGGGGGGACCAGGTTGAT-CCTGGCTTA
* * * * * * **** * * * * * *
30358196 TGCATTCTACCTTTCCGGTCGGCTGAGCGCTTGGACGCCCGTTTCGTGGGTTGGCTTAGACGTAG
1 CGCATTATGCCTCTCCGGTCGACTGAGCACCCACACGCCAGTTTCATGGGTTGACTTAGGCATAC
* * * * *
30358261 GGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCG-AGGATTGTGGCAGCGGGACCGGCAGCACG
66 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGG-TTGTGGCAGCGAGATCGGCAGCACA
* * * *
30358325 TAGAGGGGGACTAGGCTGATTCCTGGCTTG
130 CAG-GGGGGACCAGGTTGA-TCCTGGCTTA
* * * * * * * * ** * * *
30358355 CGCATTATGCCTTTTCGATTGACTCAGCGCCCGCATGCTTGTTTCGTGTGTTAACTTAGGCATAC
1 CGCATTATGCCTCTCCGGTCGACTGAGCACCCACACGCCAGTTTCATGGGTTGACTTAGGCATAC
30358420 GGAGTT
66 GGAGTT
30358426 AAATCTCAGT
Statistics
Matches: 301, Mismatches: 78, Indels: 20
0.75 0.20 0.05
Matches are distributed among these distances:
157 5 0.02
158 61 0.20
159 159 0.53
160 74 0.25
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CGCATTATGCCTCTCCGGTCGACTGAGCACCCACACGCCAGTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGCAGCGAGATCGGCAGCACAC
AGGGGGGACCAGGTTGATCCTGGCTTA
Found at i:30358363 original size:318 final size:316
Alignment explanation
Indices: 30357855--30358598 Score: 774
Period size: 318 Copynumber: 2.3 Consensus size: 316
30357845 CATGCAGGAA
* * * * * * * * * ** * * *
30357855 GGACCGGGCCAATCCCCAACCTGCGCATTCTGCCTCTCCGGCCGGCTGAGCATCCACACGTCCAT
1 GGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAACGCCCGCACGCCCGT
* * * *
30357920 TTCATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTG
66 TTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAAGGTTG
* * *
30357985 TGGCAGCGAGATCGGCAGCACACAGCGGGGGACCAGGTTGATCCTTGGCTTACGCATTATGCCTC
131 TGGCAGCGAGACCGGCAGCACACAGAGGGGGACCAGGCTGATCCTTGGCTTACGCATTATGCCTC
* * * * * *
30358050 TCCGGTCGACTGAGCACCCACATGCTAGTTTTCATGGGTTGATTTAGGCATACGGAGTTCATTCT
196 TCCGATCGACTCAGCACCCACATGCTAG-TTTCATGGGTTAACTTAGGCATACGGAGTTAAATCT
** *
30358115 CAGTCTAAGATCAGACCGGACCAAAGGTTACAGCAGCAAGATCGGCAGTACACAGGGG
260 CAGTCTAAGATCAGACC-GACCAAAGGTTACAGCAGCAAGATCAACAGCACACAGGGG
* ** * * ** * * ** *
30358173 GGACCAGGTCGATCCCTGGCTTATGCATTCTACCTTTCCGGTCGGCTGAGCGCTTGGACGCCCGT
1 GGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAACGCCCGCACGCCCGT
* *
30358238 TTCGTGGGTTGGCTTAGACGTAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCG-AGGATT
66 TTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAAGG-TT
* ** * *
30358302 GTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACTAGGCTGATTCC-TGGCTTGCGCATTATGCC
130 GTGGCAGCGAGACCGGCAGCACACAGAGGGGGACCAGGCTGA-TCCTTGGCTTACGCATTATGCC
* * * * * * * *
30358366 TTTTCGATTGACTCAGCGCCCGCATGCTTGTTTCGTGTGTTAACTTAGGCATACGGAGTTAAATC
194 TCTCCGATCGACTCAGCACCCACATGCTAGTTTCATGGGTTAACTTAGGCATACGGAGTTAAATC
** * * * * * * *
30358431 TCAGTCTAAGATGGGATCGACCGAGGGTTACGGTAGCAGGATCAACAGCACATAGGGG
259 TCAGTCTAAGATCAGACCGACCAAAGGTTACAGCAGCAAGATCAACAGCACACAGGGG
* * * *
30358489 GGACCGGGCCGATCCCCAGCTTACGTATTCTGCCTCTCCGACCGACTGAACGCCCGCACGCTCGT
1 GGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAACGCCCGCACGCCCGT
* *
30358554 TTTGTGGGTTGGCTTA-AGCATACGGAGTTCATTCCATGTCTAAGC
66 TTCGTGGGTTGGCTTAGA-CATAGGGAGTTCATTCCATGTCTAAGC
30358599 ATACAGAGTT
Statistics
Matches: 343, Mismatches: 80, Indels: 8
0.80 0.19 0.02
Matches are distributed among these distances:
315 1 0.00
316 119 0.35
317 47 0.14
318 173 0.50
319 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (316 bp):
GGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAACGCCCGCACGCCCGT
TTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAAGGTTG
TGGCAGCGAGACCGGCAGCACACAGAGGGGGACCAGGCTGATCCTTGGCTTACGCATTATGCCTC
TCCGATCGACTCAGCACCCACATGCTAGTTTCATGGGTTAACTTAGGCATACGGAGTTAAATCTC
AGTCTAAGATCAGACCGACCAAAGGTTACAGCAGCAAGATCAACAGCACACAGGGG
Found at i:30358963 original size:26 final size:26
Alignment explanation
Indices: 30358927--30358979 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30358917 GTTGACTTAG
*
30358927 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
30358953 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30358979 G
1 G
30358980 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30359102 original size:342 final size:343
Alignment explanation
Indices: 30358486--30359979 Score: 1574
Period size: 342 Copynumber: 4.3 Consensus size: 343
30358476 CAGCACATAG
* ** * * * * * *
30358486 GGGGGACCGGGCCGATCCCCAGCTTACGTATTCTGCCTCTCCGACCGACTGAACGCCCGCACGCT
1 GGGGGAACGGGCTAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCT
* * * * *
30358551 CGTTTTGTGGGTTGGCTTAAGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCC
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCC
* * ** * * * * *
30358615 TAGTCTATGATCGGTCTGGACCGAGGGTTACGGTAGCAGGACAGGCAGCAGGATTGACAACACGC
130 CAGTCTAAGATCGAACCGGACTGA-----ACGGTTGC--GACA-GCA--A-GATCGACAGCACGC
* * *
30358680 AGGGAAGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTAC
184 AGGG--GGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAC
* * *
30358745 GCCCGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCTAGCCGGACCGA
247 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
* * *
30358810 GGGTTGTGGTAGCAGGACCGACAGCACACAAC
312 GGGTTGTGGCAGCGGGACCGACAGCACGCAAC
* * * *
30358842 GGGGGAACGAGCTAATCCCCGGCTTACGCATTATGCCTCTCCGATCAGCTGAGCGCCCACAAGCT
1 GGGGGAACGGGCTAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCT
* *
30358907 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
30358972 AATCTAAGATC-AGACCGGACTGAA-GGTTGCGATAGGAAGATCGACAGCACGCAGGGGGATCGG
131 AGTCTAAGATCGA-ACCGGACTGAACGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGACCGA
** * * ** *
30359035 GCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCCGTTTTGTGG
195 GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGG
* * *
30359100 GTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGT
260 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
**
30359165 GGGACCTG-CAGCACGCAGT
325 GGGACC-GACAGCACGCAAC
* * * * *
30359184 GAGGGACCGGGC-AGATCCTCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGC
1 GGGGGAACGGGCTA-ATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGC
* *
30359248 TCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCCGGAGTTCATTCC
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
30359313 CAGTCTAAGATCGAATCGGACTG-AGGGTTG-TAGCAGCAGGATCGACAGCACGTAGGGGGAACC
130 CAGTCTAAGATCGAACCGGACTGAACGGTTGCGA-CAGCAAGATCGACAGCACGCAGGGGG-ACC
*** * * * * * **
30359376 GAGCCGATCTTTGACTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGTGCGCCCGTTTCGT
193 GAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGT
*
30359441 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
258 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
*
30359506 GCGGGA-CGACAGCACGCAGC
323 GCGGGACCGACAGCACGCAAC
* * * * * *
30359526 GGGGGATCGGGCTAATCCCTGGCTTGCGCATTATGCCTTTTCGACCGGCTGAGCGCCCACACACT
1 GGGGGAACGGGCTAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCT
* * * * *
30359591 CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAAATGGAGTTCATTCCC
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * * ** *
30359656 AGTCTAAGATCGAATCAGAC-CAAGGGTTACGGCAGCAAGATCGACAGCACGTGGGGGGGATCGA
131 AGTCTAAGATCGAACCGGACTGAACGGTTGCGACAGCAAGATCGACAGCACG-CAGGGGGACCGA
* * * * * * * * *
30359720 CCCGATCCCCAACTTACGCATTCTACCTCTCCGACCGTCTCAGCACCCTCACGCCGGTTTCGTGG
195 GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGG
* *
30359785 GTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGT
260 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
* *
30359849 GGGATCGGCAGCACGCAGA-
325 GGGACCGACAGCACGCA-AC
* * * * * * * *
30359868 GGGGG-ACTGGG-TCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACG
1 GGGGGAAC-GGGCT-AATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACG
* * * *
30359931 CTCATTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAG
64 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
30359980 ATCAGACCGG
Statistics
Matches: 972, Mismatches: 149, Indels: 48
0.83 0.13 0.04
Matches are distributed among these distances:
341 56 0.06
342 630 0.65
343 132 0.14
344 16 0.02
345 1 0.00
347 2 0.00
348 3 0.00
350 5 0.01
351 1 0.00
356 123 0.13
357 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (343 bp):
GGGGGAACGGGCTAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGAACCGGACTGAACGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGACCGAG
CCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGG
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCG
GGACCGACAGCACGCAAC
Found at i:30359305 original size:26 final size:26
Alignment explanation
Indices: 30359269--30359321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30359259 GTTGACTTAG
30359269 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30359295 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30359321 G
1 G
30359322 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30359664 original size:684 final size:686
Alignment explanation
Indices: 30358488--30359979 Score: 1852
Period size: 684 Copynumber: 2.2 Consensus size: 686
30358478 GCACATAGGG
* *
30358488 GGGACCGGGCCGATCCCCAGCTTACGTATTCTGCCTCTCCGACCGACTGAACGCCCGCACGCTCG
1 GGGACCGGG-CGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTGAACGCCCGCACGCTCG
* * * *
30358553 TTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCTAG
65 TTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCA-GTCTAAGCATACAGAGTTCATTCCCAG
* * *
30358618 TCTATGATCGGTCTGGACCGAGGGTTACGGTAGCAGGACAGGCAGCAGGATTGACAACACGCAGG
129 TCTAAGATCGATCTGGACCGAGGGTTA--GT------A-AGGCAGCAGGATCGACAACACGCAGG
* * *
30358683 GAAGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCC
185 G-AGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGTACGCC
*
30358748 CGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCTAGCCGGACCGAGGG
249 CGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGG
*
30358813 TTGTGGTAGCAGGACCGACAGCACACAACGGGGGAACGAGCTAATCCCCGGCTTACGCATTATGC
314 TTGTGGCAGCAGGACCGACAGCACACAACGGGGGAACGAGCTAATCCCCGGCTTACGCATTATGC
* * * *
30358878 CTCTCCGATCAGCTGAGCGCCCACAAGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATC
379 CTCTCCGACCAGCTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATC
* * * * * *
30358943 CCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATC-AGACCGGACTGAA-GGTTGCGATA
444 CCCAATCTAAGCAAATGGAGTTCATTCCCAATCTAAGATCGA-ACCAGAC-CAAGGGTTACGACA
* ** **** * * **
30359006 GGAAGATCGACAGCACG-CAGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGT
507 GCAAGATCGACAGCACGTCAGGGGGATCGACCCGATCCCCAACTTACGCATTCTACCTCTCCGAC
* ** *
30359070 CGGCTGAGTGCCCGCACGCCCGTTTTGTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTA
572 CGGCTCAGCACCCGCACGCCCGTTTCGTGGGTTGCCTTAGGCATA-GGAGTTCATTCCATGTCTA
** * *
30359135 AGCCCCAGCCGGACTGAGGGTTGTGGCAGTGGGACCTGCAGCACGCAGTGA
636 AGCCCCAGCCGGACCAAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGA
* * * * *
30359186 GGGACCGGGCAGATCCTCGGCTTACGCATTATGCCTCTCCGATCGACTGAGCGCCCACACGCTCG
1 GGGACCGGGC-GATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTGAACGCCCGCACGCTCG
* * * *
30359251 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCCGGAGTTCATTCCCAG
65 TTTCGTGGGTTGACTTAAGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * *
30359316 TCTAAGATCGAATC-GGACTGAGGGTT-GT-A-GCAGCAGGATCGACAGCACGTAGGG-GGAACC
129 TCTAAGATCG-ATCTGGACCGAGGGTTAGTAAGGCAGCAGGATCGACAACACGCAGGGAGG-ACC
*** * * * * *
30359376 GAGCCGATCTTTGACTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGTGCGCCCGTTTCGT
192 GAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGTACGCCCGTTTCGT
* * *
30359441 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
257 GGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
* * * * * * * * *
30359506 GCGGGA-CGACAGCACGCAGCGGGGGATCGGGCTAATCCCTGGCTTGCGCATTATGCCTTTTCGA
322 GCAGGACCGACAGCACACAACGGGGGAACGAGCTAATCCCCGGCTTACGCATTATGCCTCTCCGA
*
30359570 CCGGCTGAGCGCCCACACA-CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATC
387 CCAGCTGAGCGCCCACA-AGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATC
* * *
30359634 TAAGCAAATGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCAAGGGTTACGGCAGCAAGATCG
451 TAAGCAAATGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTACGACAGCAAGATCG
** *
30359699 ACAGCACGTGGGGGGGATCGACCCGATCCCCAACTTACGCATTCTACCTCTCCGACCGTCTCAGC
516 ACAGCACGTCAGGGGGATCGACCCGATCCCCAACTTACGCATTCTACCTCTCCGACCGGCTCAGC
* * *
30359764 ACCCTCACGCCGGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCC
581 ACCCGCACGCCCGTTTCGTGGGTTGCCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
30359829 GGACCAAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAGG
646 GGACCAAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGA
* * * * * * *
30359870 GGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACGCTCA
1 GGGACCGGG-CGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTGAACGCCCGCACGCTCG
* *
30359935 TTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAG
65 TTTCGTGGGTTGACTTAAGCATACGGAGTTCA-TCCCAGTCTAAG
30359980 ATCAGACCGG
Statistics
Matches: 682, Mismatches: 102, Indels: 34
0.83 0.12 0.04
Matches are distributed among these distances:
683 2 0.00
684 322 0.47
685 198 0.29
686 22 0.03
687 1 0.00
695 2 0.00
697 1 0.00
698 129 0.19
699 5 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (686 bp):
GGGACCGGGCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTGAACGCCCGCACGCTCGT
TTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
TAAGATCGATCTGGACCGAGGGTTAGTAAGGCAGCAGGATCGACAACACGCAGGGAGGACCGAGC
CGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGTACGCCCGTTTCGTGGGT
TGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAG
GACCGACAGCACACAACGGGGGAACGAGCTAATCCCCGGCTTACGCATTATGCCTCTCCGACCAG
CTGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGC
AAATGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTACGACAGCAAGATCGACAGC
ACGTCAGGGGGATCGACCCGATCCCCAACTTACGCATTCTACCTCTCCGACCGGCTCAGCACCCG
CACGCCCGTTTCGTGGGTTGCCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
AAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGA
Found at i:30360029 original size:158 final size:157
Alignment explanation
Indices: 30359643--30360137 Score: 498
Period size: 158 Copynumber: 3.1 Consensus size: 157
30359633 CTAAGCAAAT
* * *
30359643 GGAGTTCATTCCCA-GTCTAAGATC-GAATCAGACCAAGGGTTACGGCAGCAAGATCGACAGCAC
1 GGAGTTCATT-CCATGTCTAAGATCAG-ACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCAC
** ** * * * * * *
30359706 GTGGGGGGGA-TCGACCCGATCCCCAACTTACGCATTCTACCTCTCCGACCGTCTCAGCACCCTC
64 GTAAGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCCCGC
*
30359770 ACGC-CGGTTTCGTGGGTTGGCTTAGGCATA
128 ACGCTC-GTTTCATGGGTTGGCTTAGGCATA
** ** ** *
30359800 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGTGGGATCGGCAGCACG
1 GGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACG
* * * * * *
30359864 CAGAGGGGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCA
65 TA-AGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCCCGCA
* * *
30359929 CGCTCATTTCATGGGTTGACTTACGCATA
129 CGCTCGTTTCATGGGTTGGCTTAGGCATA
* * *
30359958 CGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAACAC
1 -GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCAC
** ** * *
30360022 GTAAGGGGGACCAGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
64 GTAAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCCCGCA
* *
30360087 CGCTCGTTTCACGGGTTGGCTTAGGTATA
129 CGCTCGTTTCATGGGTTGGCTTAGGCATA
30360116 TGGAGTTCATTCCATGTCTAAG
1 -GGAGTTCATTCCATGTCTAAG
30360138 CATACGGGTT
Statistics
Matches: 270, Mismatches: 58, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 49 0.18
158 165 0.61
159 50 0.19
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACGT
AAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATA
Found at i:30361170 original size:158 final size:159
Alignment explanation
Indices: 30360909--30361372 Score: 431
Period size: 158 Copynumber: 2.9 Consensus size: 159
30360899 CGAACTAGAC
* * * * * * *
30360909 CGAGGGTTGCGACAGCAGGATCGCCAACACGCAGGGGGGA-CCGGACCGATCCCCGGA-TTACGC
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGAGAGATCCGG-CCGATCCCC-GACTTGCGC
* * * *** * * * *
30360972 ATTCTGCC-ACTTCGACCGACTGAACACCCGCTCGCCCATTTCATGGGTTGGCTTAGGCATAGGG
64 ATTATGCCTA-TCCGACCGACTCAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* *
30361036 AGTTCATTCCATGTCTAAGCCCCA-ACCGGAT
128 AGTTCATTCCATGTCTAAGCACCAGAACGGAT
* * * * *
30361067 CGAGGGTTGTGGCAGCAGGATC-AGCAGCGCGCAGAGAGGGA-CCGGCCGATCCTCGGCTTTCGC
1 CGAGGGTTGTGGCAGCAGGATCGA-CAGCACGCAG-GAGAGATCCGGCCGATCCCCGACTTGCGC
* * * **
30361130 ATTATGCCTATCTGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGA
64 ATTATGCCTATCCGACCGACTCAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
* *
30361195 GTTCATT-CTTAGTCTAAG-ATCAGAACGGAT
129 GTTCATTCCAT-GTCTAAGCACCAGAACGGAT
* * * * *
30361225 CGAGGGTTGTGGTAGCAGGATCGACAGCATGCAGGCGAGATCGGGTCGATCCCCGACTTGCGCAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGAGAGATCCGGCCGATCCCCGACTTGCGCAT
* * * * ** *
30361290 TCTGCCTCTCCGACCGACTGAGTTCTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TATGCCTATCCGACCGACTCAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
30361355 TCATTCCATGTCTAAGCA
131 TCATTCCATGTCTAAGCA
30361373 TGCAGAGTTC
Statistics
Matches: 245, Mismatches: 51, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 9 0.04
158 222 0.91
159 14 0.06
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGAGAGATCCGGCCGATCCCCGACTTGCGCAT
TATGCCTATCCGACCGACTCAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCACCAGAACGGAT
Found at i:30362240 original size:159 final size:158
Alignment explanation
Indices: 30362048--30362423 Score: 393
Period size: 158 Copynumber: 2.4 Consensus size: 158
30362038 AACTGAGTGA
* * * * * *
30362048 CCGCACGCCCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TT
1 CCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGATC
* * * * * * *
30362112 GGACCGAGGGTTGCGGCAGCGGGACCTACAGAACGC-AGAGGGGGACCAGGCTGATCCTCAGTTT
65 GGACAGAGGGTTGCAGCAGCAGGACCGACAGAAC-CTA-AGGGGGACCAGGCCGATCCCCAGCTT
*
30362176 GCACATTATGCCTCTTC-GACCGGCTC-AGCGC
128 GCACATTATGCCTCTCCAG-CCGG-TCGAGCGC
* * * *
30362207 CCGCACGCTCGTTTCGTGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATC
1 CCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGATC
* * * * * *
30362271 GGACAGAGGGTTGCAGTAGCAGGATCGATAGCACCTAAGGGGGACCGGGCCGATCCCCGGCTTGC
65 GGACAGAGGGTTGCAGCAGCAGGACCGACAGAACCTAAGGGGGACCAGGCCGATCCCCAGCTTGC
* * *
30362336 GCATTCTGCCTCTCCAGTCGGTCGAGCGC
130 ACATTATGCCTCTCCAGCCGGTCGAGCGC
*
30362365 CCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTTCTTTCCACGTCTAAGCA
1 CCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAG-TTCATTCCA-GTCTAAGCA
30362424 TACGGAGTTC
Statistics
Matches: 178, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 86 0.48
159 86 0.48
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGATCG
GACAGAGGGTTGCAGCAGCAGGACCGACAGAACCTAAGGGGGACCAGGCCGATCCCCAGCTTGCA
CATTATGCCTCTCCAGCCGGTCGAGCGC
Found at i:30362445 original size:26 final size:27
Alignment explanation
Indices: 30362394--30362447 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
30362384 GTTAGCTTAG
*
30362394 GCATACGGAGTTTCTTTCCACGTCTAA
1 GCATACGGAGTTTCTTCCCACGTCTAA
30362421 GCATACGGAG-TTCATTCCCA-GTCTAA
1 GCATACGGAGTTTC-TTCCCACGTCTAA
30362447 G
1 G
30362448 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (27 bp):
GCATACGGAGTTTCTTCCCACGTCTAA
Found at i:30362780 original size:26 final size:26
Alignment explanation
Indices: 30362750--30362802 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30362740 GTTGACTTAG
* *
30362750 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
30362776 GCATACGGGGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30362802 G
1 G
30362803 ATCGAACGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30363077 original size:159 final size:159
Alignment explanation
Indices: 30362839--30363279 Score: 503
Period size: 159 Copynumber: 2.8 Consensus size: 159
30362829 CAAGATCGAC
* * * * * *
30362839 AGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCTGCATTGTGCCTCTCCGACCGGCTGAGTG
1 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTG-TGCATTATGCCTCTCCGGCCGGCTAAGTG
* * * * *
30362904 CCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* * * *
30362968 CGGACCGAGGGTTGAGGCAGCGGGACCGAT
130 CAGACCGAGGGTTGAGACAACAGGACCGAT
* * * * *
30362998 AGCACGCAGTGGGGGACCAGGCCGATCCCTGGCTTGTGCATTATGCCTCTCTGGCCAGCTTAGCG
1 AGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTAAGTG
* * * *
30363063 CACGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * *
30363126 CCAGACCGAGGGTTGTGACAATAGGATCGAT
129 CCAGACCGAGGGTTGAGACAACAGGACCGAT
** * * * *
30363157 AGCACATAGGGGGGATCAGGTCC-ATCCCCGGCCTGCGCATTCTGCCTCTCCGGCCGGCTAAGTG
1 AGCACGCAGGGGGGACCAGG-CCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTAAGTG
* *
30363221 CCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30363280 TACGGAGTTC
Statistics
Matches: 234, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.01
158 94 0.40
159 112 0.48
160 25 0.11
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCTAAGTGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
AGACCGAGGGTTGAGACAACAGGACCGAT
Found at i:30363287 original size:26 final size:26
Alignment explanation
Indices: 30363251--30363303 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30363241 GTTGGCTTAG
30363251 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
30363277 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
30363303 G
1 G
30363304 ATCAGTCCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:30363478 original size:26 final size:26
Alignment explanation
Indices: 30363448--30363500 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30363438 GTTGACTTAG
30363448 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
30363474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30363500 G
1 G
30363501 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30363497 original size:197 final size:196
Alignment explanation
Indices: 30363147--30363529 Score: 500
Period size: 197 Copynumber: 1.9 Consensus size: 196
30363137 GTTGTGACAA
* * * *
30363147 TAGGATCGATAGCACATAGGGGGGATCAGGTCCATCCCCGGCCTGCGCATTCTGCCTCTCCGGCC
1 TAGGATCGACAGCACATAGGGGGGATCAGGGCCATCCCCAGCCTACGCATTCTGCCTCTCCGGCC
* * * * * * *
30363212 GGCTAAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GACTAAGCGCCCACACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
* * *
30363277 GCATACGGAGTTCATTTCCAGTCTAAGATCAGTCCAGATCGAGGGTTACGACAGCAGGACCAGCA
131 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGACCAGCA
30363342 C
196 C
* ** *
30363343 TAGGATCGACAGCACGTAGGGGGGATC-GGGCCGATCCCCAGTTTACGCATTCTGCCTCTCTGGC
1 TAGGATCGACAGCACATAGGGGGGATCAGGGCC-ATCCCCAGCCTACGCATTCTGCCTCTCCGGC
* * **
30363407 CGATTGAGCGCCTGCACGCTCGATTTCATGAGTTGACTTAGGCATACAGAGTTCATCCC-TAGTC
65 CGACTAAGCGCCCACACGCTCG-TTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCAT-GTC
* * *
30363471 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
128 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCA
30363530 AGATCGACAG
Statistics
Matches: 159, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
195 4 0.03
196 68 0.43
197 87 0.55
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (196 bp):
TAGGATCGACAGCACATAGGGGGGATCAGGGCCATCCCCAGCCTACGCATTCTGCCTCTCCGGCC
GACTAAGCGCCCACACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGACCAGCA
C
Found at i:30363633 original size:698 final size:697
Alignment explanation
Indices: 30362718--30364003 Score: 1860
Period size: 698 Copynumber: 1.8 Consensus size: 697
30362708 GCTGAGCACC
* **
30362718 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACG
* * *
30362783 GGGTTCATTCCCAATCTAAGATCGAACGGACTGAGGGTTACGGTAGCAAGATCGACAGCACGCAG
66 GAGTTCATTCCCAATCTAAGATCGAACGGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAG
* * * * * *
30362848 GGGGGACCGGGTCGATCCCCAGCTTGCTGCATTGTGCCTCTCCGACCGGCTGAGTGCCCGTACAC
131 GGGGGACCGGGGCGATCCCCAGCTTGCTGCATTCTGCATCTCCGACCAGCTGAGCGCCCGCACAC
* * *
30362913 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
196 CCGTTCCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* *
30362978 GTTGAGGCAGCGGGACCGATAGCACGCAGTG-GGGGACCAGGCCGATCCCTGGCTTGTGCATTAT
261 GTTGAGGCAGCGGGACCGACAGCACGCAG-GAGGGGACCAGGCCGATCCCTGGCTTATGCATTAT
* * *
30363042 GCCTC-TCTGGCCAGCTTAGCGCACGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTC
325 GCCTCTTC-GACCAGCTCAGCGCACGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTC
* * * *
30363106 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAATAGGATCGATAGCACATAGGGGGG
389 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAACAGGATCGACAGCACACAGGGGGA
* * * * **
30363171 ATCAGG-TCCATCCCCGGCCTGCGCATTCTGCCTCTCCGGCCGGCTAAGTGCCCACACGCTCGTT
454 ATCGGGCT-CATCCCCGGCCTGCGCATTATACCTCTCCAGCCGGCTAAGCACCCACACGCTCGTT
* * *
30363235 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTTCCAGTC
518 TCGTGGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTC
30363300 TAAGATCAGTCCAGATCGAGGGTTACGACAGCAGGACCAGCACTAGGATCGACAGCACGTAGGGG
583 TAAGATCAGTCCAGATCGAGGGTTACGACAGCAGGACCAGCACTAGGATCGACAGCACGTAGGGG
30363365 GGATCGGGCCGATCCCCAGTTTACGCATTCTGCCTCTCTGGCCGATTGAG
648 GGATCGGGCCGATCCCCAGTTTACGCATTCTGCCTCTCTGGCCGATTGAG
* *
30363415 CGCCTGCACGCTCGATTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATAC
1 CGCCCGCACGCTC-ATTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC
* * * *
30363480 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCATGC
65 GGAGTTCATTCCCAATCTAAGATC-GAACGGACCGAGGGTTACGGCAGCAAGATCGACAGCACGC
* * **
30363545 AGGGGGGACCGGGGCGATCCCCGGCTTGC-GCATTCTGCATCTGCGGTCAGCTGAGCGCCCGCAC
129 AGGGGGGACCGGGGCGATCCCCAGCTTGCTGCATTCTGCATCTCCGACCAGCTGAGCGCCCGCAC
* * * *
30363609 GCTCGTTCCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGA
194 ACCCGTTCCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* *
30363674 GGGTTGTGGCAGCGGGACCGACAGCACGCAGGAGGGGACCGGGCCGATCCCTGGCTTATGCATTA
259 GGGTTGAGGCAGCGGGACCGACAGCACGCAGGAGGGGACCAGGCCGATCCCTGGCTTATGCATTA
* * * * * * *
30363739 TGCCTCTTCGATCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTT
324 TGCCTCTTCGACCAGCTCAGCGCACGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTC
* ** * * *
30363804 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGTGGA
389 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAACAGGATCGACAGCACACAGGGGGA
* * * * * * * *
30363869 ATCGGGCTGATCCCTGGCTTGCGCATTATACCTCTCCAGCTGGCTGAGCACCCGCATGCTTGTTT
454 ATCGGGCTCATCCCCGGCCTGCGCATTATACCTCTCCAGCCGGCTAAGCACCCACACGCTCGTTT
*
30363934 CGTGGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCT
519 CGTGGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCT
30363999 AAGAT
584 AAGAT
30364004 TTTGAGCCAC
Statistics
Matches: 513, Mismatches: 71, Indels: 9
0.87 0.12 0.02
Matches are distributed among these distances:
697 13 0.03
698 435 0.85
699 65 0.13
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (697 bp):
CGCCCGCACGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACG
GAGTTCATTCCCAATCTAAGATCGAACGGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAG
GGGGGACCGGGGCGATCCCCAGCTTGCTGCATTCTGCATCTCCGACCAGCTGAGCGCCCGCACAC
CCGTTCCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
GTTGAGGCAGCGGGACCGACAGCACGCAGGAGGGGACCAGGCCGATCCCTGGCTTATGCATTATG
CCTCTTCGACCAGCTCAGCGCACGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAACAGGATCGACAGCACACAGGGGGAAT
CGGGCTCATCCCCGGCCTGCGCATTATACCTCTCCAGCCGGCTAAGCACCCACACGCTCGTTTCG
TGGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
GATCAGTCCAGATCGAGGGTTACGACAGCAGGACCAGCACTAGGATCGACAGCACGTAGGGGGGA
TCGGGCCGATCCCCAGTTTACGCATTCTGCCTCTCTGGCCGATTGAG
Found at i:30363953 original size:158 final size:157
Alignment explanation
Indices: 30363474--30363975 Score: 564
Period size: 158 Copynumber: 3.2 Consensus size: 157
30363464 CCTAGTCTAA
* *
30363474 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
30363538 AGCATGCAGGGGGGACCGGGGCGATCCCCGGCTTGCGCATTCTGCATCTGCGGTCAGCTGAGCGC
65 AGCACGCAGGGGGGACC-GGGCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
*
30363603 CCGCACGCTCGTTCCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
30363632 GCATA-GGAAGTTCATTCCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGG-AGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
** * * *
30363695 CAGCACGCAGGAGGGGACCGGGCCGATCCCTGGCTTATGCATTATGCCTCTTCGATCGGCTCAGT
64 CAGCACGCAGG-GGGGACCGGG-CGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGC
* * * *
30363760 GCCCGCACGCTCATTTCATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
30363791 GCATACGGAGTTTATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
30363855 AGCACGCAGGTGGAATCGGGCTGATCCCTGGCTTGCGCATTATACCTCTCC-AGCTGGCTGAGCA
65 AGCACGCAGGGGGGACCGGGC-GATCCCTGGCTTGCGCATTATGCCTCTCCGATC-GGCTGAGCG
* *
30363919 CCCGCATGCTTGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
30363949 GCATACGGAGGTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30363976 CATATAGAGT
Statistics
Matches: 282, Mismatches: 51, Indels: 22
0.79 0.14 0.06
Matches are distributed among these distances:
157 11 0.04
158 143 0.51
159 123 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30363978 original size:26 final size:26
Alignment explanation
Indices: 30363949--30364001 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30363939 GTTGGCTTAG
*
30363949 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACAGAGGTCATTCCCA-GTCTAA
* *
30363975 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
30364001 G
1 G
30364002 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:30364973 original size:158 final size:158
Alignment explanation
Indices: 30364811--30365184 Score: 428
Period size: 158 Copynumber: 2.4 Consensus size: 158
30364801 CAACTGAGTG
* * * *
30364811 CCCGCACGCCCGTTTCGTGGGTCGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAG-TC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACC
* * * * * * *
30364875 GAATCGAAGGTTGGGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTG
66 GAACCGAAGGTTGCGACAACAGGACCGACAACACGCAG-GGGGGATCGGGCCAATCCCCAGCTTG
*
30364940 CGCATTATGCCTCTCCGACCGGCTCAGCA
130 CGCATTATGCCTCTCCGACCAGCTCAGCA
* * ** *
30364969 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTCTAAGATCGGAC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGAC
* * * * * * *
30365033 CGGACCGAGGGTTGCTACAACAGGATCGATAACACGTAGGGGGGATCGGGCCGATCCCCAGCTTG
65 CGAACCGAAGGTTGCGACAACAGGACCGACAACACGCAGGGGGGATCGGGCCAATCCCCAGCTTG
* * ** * *
30365098 CGTATTCTGCCTCTCCGGTCAGCTGAGCG
130 CGCATTATGCCTCTCCGACCAGCTCAGCA
* *
30365127 TCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
30365185 ATATGAGTTC
Statistics
Matches: 178, Mismatches: 35, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.02
158 145 0.81
159 30 0.17
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACC
GAACCGAAGGTTGCGACAACAGGACCGACAACACGCAGGGGGGATCGGGCCAATCCCCAGCTTGC
GCATTATGCCTCTCCGACCAGCTCAGCA
Found at i:30365563 original size:26 final size:26
Alignment explanation
Indices: 30365527--30365576 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
30365517 TACTTAGGCA
*
30365527 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAATCTAAGCT
*
30365553 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
30365577 ATCGGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCT
Found at i:30365845 original size:159 final size:158
Alignment explanation
Indices: 30365611--30366053 Score: 477
Period size: 159 Copynumber: 2.8 Consensus size: 158
30365601 CAGCAGGATC
* * * * *
30365611 GACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGTATTCTGCCTC-TCTAGCCGGCTCA
1 GACAGCACGCAGGGGGGATCAGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTC-AGTCGGCTCA
* * *
30365675 G-TGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
64 GCT-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACT
* * * *
30365739 AG-TCGAACCAAGGGTTGTGGCAGTGGGACC
128 AGACCGAACCAAGGGTTGTGACAGTAGGACA
* * *
30365769 GGCAGCACGCAGAGGGAGATCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCAGTCGGCTCA
1 GACAGCACGCAG-GGGGGATCAGGC-GATCCCCGGCTTGCGCATTCTGCCTCTTCAGTCGGCTCA
* * * *
30365834 GCTCCCGCACGCTCGTTTCATGGGTTGGCTTATGTATACGGAGTTCATTCC-TACTCTAAG-ATT
64 GCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACT
** * *
30365897 AGACCGAACCGGGGGTTGTGATAGTAGGATA
128 AGACCGAACCAAGGGTTGTGACAGTAGGACA
* * * * * *
30365928 GACAG-ACCGCAGGGGGGATCAGGACGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGA
1 GACAGCA-CGCAGGGGGGATCAGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTCAGTCGGCTCA
* *
30365992 GCGT-CCGCACGCTCGTTTCGTGGGTTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 GC-TCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30366054 TACAGAGTTC
Statistics
Matches: 237, Mismatches: 37, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
158 110 0.46
159 124 0.52
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GACAGCACGCAGGGGGGATCAGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGTCGGCTCAGC
TCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGA
CCGAACCAAGGGTTGTGACAGTAGGACA
Found at i:30366074 original size:26 final size:26
Alignment explanation
Indices: 30366025--30366077 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30366015 GTTGGCATAG
* *
30366025 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
30366051 GCATACAGAGTTCATTTCC-CGTCTAA
1 GCATACAGAGTTCA-TTCCACGTCTAA
30366077 G
1 G
30366078 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:30366775 original size:26 final size:26
Alignment explanation
Indices: 30366739--30366791 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30366729 GTTGACTTAG
30366739 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30366765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30366791 G
1 G
30366792 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30367074 original size:159 final size:159
Alignment explanation
Indices: 30366850--30367268 Score: 393
Period size: 159 Copynumber: 2.6 Consensus size: 159
30366840 GGGACTAGGT
* * ** *
30366850 CGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGCC-GACAGAGTGCCCGCACGCCCGTTTCATGG
1 CGATCCCCGA-CTTGCGCATTATGCCTCTCCGACCAG-CTCAGTGCCCGCACGCTCGTTTCATGG
* * *
30366913 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGAACAGAGGGTTGTGGCAG
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACAGAGGGTTGTGGCAG
** * *
30366977 CGGGACC-AGCAGCACGAAGAGGGGGATCGGGC
129 CAAGACCGA-CAGAACGAAG-GGGGGATCGAGC
* * * * * * * *
30367009 CGATTCCCGACTTGTGCATTATGCCTCTTCGGCCGGTTCAGCT-CCCGCACGCTCATTTCGTGGG
1 CGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAG-TGCCCGCACGCTCGTTTCATGGG
* * * * * *
30367073 TTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGGACCGAGGGTTGTTGCAG
65 TTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGAACAGAGGGTTGTGGCAG
* * *
30367136 CAAGATCGACAGAACGTAGGGGGGATCGAGT
129 CAAGACCGACAGAACGAAGGGGGGATCGAGC
* * * * * *
30367167 CGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCAGCTGAGTGCCCGTACGCTCGTTTCTTGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCCGCACGCTCGTTTCATGGGT
** *
30367232 TGGCAGAGGCATATGGAGTTCATTCCATGTCTAAGCA
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30367269 TGTAGAGTTC
Statistics
Matches: 207, Mismatches: 44, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 92 0.44
159 110 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACAGAGGGTTGTGGCAGCA
AGACCGACAGAACGAAGGGGGGATCGAGC
Found at i:30367244 original size:158 final size:157
Alignment explanation
Indices: 30366765--30367266 Score: 455
Period size: 158 Copynumber: 3.2 Consensus size: 157
30366755 CCCAGTCTAA
* *
30366765 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GAATCGGACCGAGGGTTG-CGATAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ACCGGACCGAGGGTTGTCG-CAGCAGGATCG
* * * * *
30366827 ACAGCACGCAGGGGGGA-CTAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCC-GACAGA
63 ACAGCACGAAGGGGGGATCGA-GTCGATCCCCGGCTTGCGCATTATGCCTCTCC-GCCAG-CTGA
*
30366890 GTGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
125 GTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * * *
30366923 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGAACAGAGGGTTGTGGCAGCGGGA-CCAG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTCGCAGCAGGATCGA-
* * * * * * * * *
30366986 CAGCACGAAGAGGGGGATCGGGCCGATTCCCGACTTGTGCATTATGCCTCTTCGGCCGGTTCAGC
64 CAGCACGAAG-GGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTC-TCCGCCAGCTGAG-
* * * *
30367051 T-CCCGCACGCTCATTTCGTGGGTTGACTTAT
126 TGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
30367082 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGTTGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGTCGCAGCAGGATCGAC
* * * *
30367146 AGAACGTAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCAGCTGAGTGC
65 AGCACGAAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG-CCAGCTGAGTGC
* * **
30367211 CCGTACGCTCGTTTCTTGGGTTGGCAGAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
30367240 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30367267 CATGTAGAGT
Statistics
Matches: 268, Mismatches: 60, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 9 0.03
158 137 0.51
159 114 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTCGCAGCAGGATCGACA
GCACGAAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGCCAGCTGAGTGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:30368423 original size:158 final size:158
Alignment explanation
Indices: 30367966--30368467 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 158
30367956 CCCAGTCTAA
* * * *
30367966 GCATACAGAGTTCATT-CATCATCGAAGATCAAACCGAACAGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGAACAGAGGGTTGCGGCAGCAGGATCGAC
* * ** * *
30368030 AACACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTC-TCTGGCTGGATGAGCG
65 AGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTTC-GGCCGGCTGAGCG
* * *
30368094 CCCGCACGCCCGTTTCATGGTTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * *
30368124 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGAACAGAGGGTTGCGGCAGCAGGATCGACA
* * * *** * * *
30368189 GCACGTAGAAGGGGATCGGGCCGATCCCCAACTTTCGCATTAGGCCTCTTCGGTCGGCTTAGCAC
66 GCACGTAG-GGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGC
* * *
30368254 CCGCATGCTCGTTTCGTGGGTTGACTTAT
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
30368283 GCATACGGAGTTCATTCCCA-GTCTAAGATTAAACC-AGACTGAGGGTTGCGGTAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGA-ACAGAGGGTTGCGGCAGCAGGATCGA
* * * *
30368346 CAGCATGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTTCCTCTTCGACCGGCTGAGCG
64 CAGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCG
* *
30368411 CCCGCACACTCGTTTCGTGGGTTGGGTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
30368441 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30368468 CATATGGAGT
Statistics
Matches: 273, Mismatches: 65, Indels: 12
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.01
158 146 0.53
159 119 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGAACAGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30368477 original size:26 final size:26
Alignment explanation
Indices: 30368441--30368493 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30368431 GTTGGGTTAG
*
30368441 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCAGTACCA-GTCTAA
*
30368467 GCATATGGAGTTCAGTACCAGTCTAA
1 GCATACGGAGTTCAGTACCAGTCTAA
30368493 G
1 G
30368494 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAGTACCAGTCTAA
Found at i:30368967 original size:26 final size:26
Alignment explanation
Indices: 30368931--30368983 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30368921 GTTGGCTTAG
30368931 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30368957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30368983 G
1 G
30368984 GTCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30370567 original size:160 final size:160
Alignment explanation
Indices: 30370342--30370878 Score: 388
Period size: 159 Copynumber: 3.3 Consensus size: 160
30370332 CCCGCGTGCC
* * * ** * *
30370342 CATTCCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGG
1 CATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCGGA-TCAGACCGAGG
* * * *
30370406 GTTTGTGGTAGCGGGATCGATAGTACGTACA-G-GGGGATCG-GGCAGAT-CCTCGACTTGCACA
65 GTTTGCGATAGCAGGATCGATAG--CATACAGGAGGGGATCGAGGC-GATCCCT-GACTTGCACA
* ** ** *
30370467 TTATGCCTGTCCGATTGGCTCAGCACTTGTACACT
126 TTATGCCTCTCCGACCGGCTCAGCACCCGCACACT
* * *
30370502 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTGAGATCGGATCAGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCGGATCAGACCGAGGG
* * ** *
30370567 -TTGCGATAGCAGGATCGATAGCATGCAGGAGGGGATCGAGTCGATCCCTGGTTTGCACATTCTG
66 TTTGCGATAGCAGGATCGATAGCATACAGGAGGGGATCGAGGCGATCCCTGACTTGCACATTATG
* * * **
30370631 CCTCTCCTACCGGCTGAGCGCCCGCATGCT
131 CCTCTCCGACCGGCTCAGCACCCGCACACT
* * * *
30370661 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCGGATCAGACCGAGGG
* * * * * *
30370726 TTACGACAGCA-AGACCAGCAGCAGGATCGACATCACGTAGGAGGGGATC-AGGCTGATCCCCGG
66 TT-TG-C-G-ATAG--CAGGATC--GATAG-CAT-AC--AGGAGGGGATCGAGGC-GATCCCTGA
* * * * ** * **
30370789 CTTGCGCATTCTGCCTCTCTGACCGGCTGAGTGCTCGCACGTT
118 CTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACACT
* * *
30370832 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAG
30370879 GCCCAACCGG
Statistics
Matches: 303, Mismatches: 55, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.01
158 1 0.00
159 118 0.39
160 58 0.19
161 3 0.01
162 1 0.00
163 3 0.01
164 1 0.00
165 5 0.02
167 4 0.01
168 3 0.01
169 1 0.00
170 3 0.01
171 98 0.32
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (160 bp):
CATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCGGATCAGACCGAGGG
TTTGCGATAGCAGGATCGATAGCATACAGGAGGGGATCGAGGCGATCCCTGACTTGCACATTATG
CCTCTCCGACCGGCTCAGCACCCGCACACT
Found at i:30370667 original size:159 final size:163
Alignment explanation
Indices: 30370504--30370878 Score: 438
Period size: 171 Copynumber: 2.3 Consensus size: 163
30370494 TGTACACTCA
* * *
30370504 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTGAGATCGGATCAGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTT
* * * * * *
30370569 -GC-G-A-TAGCAGGATCGATAGCATGCAGGAGGGGATCGAGTC-GATCCCTGGTTTGCACATTC
66 AGCAGCAGCAGCAGGATCGACAGCACGCAGGAGGGGATC-AGGCTGATCCCCGGCTTGCACATTC
*
30370629 TGCCTCTCCT-ACCGGCTGAGCGCCCGCATGCTCG
130 TGCCTCT-CTGACCGGCTGAGCGCCCGCACGCTCG
* * *
30370663 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTT
* *
30370728 ACGACAGCAAGACCAGCAGCAGGATCGACATCACGTAGGAGGGGATCAGGCTGATCCCCGGCTTG
66 -----AGC-AG--CAGCAGCAGGATCGACAGCACGCAGGAGGGGATCAGGCTGATCCCCGGCTTG
* * * *
30370793 CGCATTCTGCCTCTCTGACCGGCTGAGTGCTCGCACGTTCG
123 CACATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCG
*
30370834 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAG
30370879 GCCCAACCGG
Statistics
Matches: 180, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
159 59 0.33
165 2 0.01
167 1 0.01
170 6 0.03
171 112 0.62
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (163 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTT
AGCAGCAGCAGCAGGATCGACAGCACGCAGGAGGGGATCAGGCTGATCCCCGGCTTGCACATTCT
GCCTCTCTGACCGGCTGAGCGCCCGCACGCTCG
Found at i:30370927 original size:171 final size:169
Alignment explanation
Indices: 30370574--30370977 Score: 422
Period size: 171 Copynumber: 2.4 Consensus size: 169
30370564 GGGTTGCGAT
* * * * * *
30370574 AGCAGGATCGATAGCATGCAGGAGGGGATCGAGTC-GATCCCTGGTTTGCACATTCTGCCTCTCC
1 AGCAGGATCGACAGTA-GCAGGAGGGGATC-AGGCTGATCCCCGGCTTGCGCATTCTGCCTCT-C
* *
30370638 TACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGT
63 TACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
**** * *
30370703 CTAAGATTGGACCAGACCGAGGGTTACGACAGCAAGACCAGC
128 CTAAGACCCAACCAGACCAAGGGTTACGACAGCAAGACCAGA
*
30370745 AGCAGGATCGACA-TCACGTAGGAGGGGATCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCT
1 AGCAGGATCGACAGT-A-GCAGGAGGGGATCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCT
* * *
30370809 GACCGGCTGAGTGCTCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
64 -ACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-G
* * ** * * * *
30370873 TCTAAGGCCCAACCGGACCAAGGGTTGTGATAGCAGGATCGGA
127 TCTAAGACCCAACCAGACCAAGGGTTACGACAGCAAGACCAGA
* * * *
30370916 AGC-GAGATCGACAGTAGCA-GAGGGGGACCAGGCTGATCCCCGACTTGTGCATTATGCCTCTC
1 AGCAG-GATCGACAGTAGCAGGA-GGGGATCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTC
30370978 CGGTCAGTTA
Statistics
Matches: 194, Mismatches: 32, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
169 2 0.01
170 47 0.24
171 144 0.74
172 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (169 bp):
AGCAGGATCGACAGTAGCAGGAGGGGATCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTAC
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGACCCAACCAGACCAAGGGTTACGACAGCAAGACCAGA
Found at i:30371065 original size:26 final size:26
Alignment explanation
Indices: 30371028--30371099 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
30371018 TAGGCACACA
* *
30371028 GAGTTCAACCCCAATCTAAGCATACG
1 GAGTTCATCCCCAGTCTAAGCATACG
30371054 GAGTTCATCCCCAGTCTAAGCATACG
1 GAGTTCATCCCCAGTCTAAGCATACG
*
30371080 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATCCCCAGTCTAAG
30371100 ATCGGATCGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCATACG
Found at i:30371272 original size:26 final size:26
Alignment explanation
Indices: 30371242--30371294 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30371232 GTTGGCTTAG
30371242 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
30371268 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30371294 G
1 G
30371295 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30371988 original size:159 final size:158
Alignment explanation
Indices: 30371668--30372164 Score: 394
Period size: 159 Copynumber: 3.1 Consensus size: 158
30371658 CTAAGCAAAT
** * * * * **
30371668 GGAGTTCATTCCCA-GTCTAAG-ATCA-GACCGGACCGAGGGTTGCAGCAGCAGGATCGGTAGCA
1 GGAGTTCATT-CCATGTCTAAGCA-CAGGACTAGACTGAGGGTTACGGCAGCAGGACCGACAGCA
* * * * * * * *
30371730 CGT-AGGGGGACCAGACCGATCCCTGGCTT-TCGAATTTTGCCTCTC-CAGCCGGCTAAGCACCT
64 CGTAAGGGGGACCGGGCCGATCCCCGACTTGT-GCATTATGCCTCTCTGA-CCAGCTAAG-ACCT
* ** *
30371792 GCACGC-C-TGTTTCATGGATTGGCTTAGGCATAG
126 GCACGCTCAT-TTT-ATGGGTTAACTTAGGCATAC
* * * * *
30371825 GGAGTTCATTCCATGTCTAAGCCCCA-GTC-GGACCT-AGGGTTATGGCAGCGGGACCGACAGCA
1 GGAGTTCATTCCATGTCTAAG-CACAGGACTAGA-CTGAGGGTTACGGCAGCAGGACCGACAGCA
* *
30371887 CGTAGAGGGGGACCTGGCCGATCCCCTACTTGTGCATTATGCCTCT-TCGACCAGCTCAATG-CC
64 CGTA-AGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCT-GACCAGCT-AA-GACC
*
30371950 TGCACGCTCATTTTGTGGGTTAACTTAGGCATAC
125 TGCACGCTCATTTTATGGGTTAACTTAGGCATAC
* * *
30371984 GGAGTTCATTCCCA-GTCTAAG-ATAGGACTAGACTGAGGGTTACGGTAGCAGGATCGACAGCAC
1 GGAGTTCATT-CCATGTCTAAGCACAGGACTAGACTGAGGGTTACGGCAGCAGGACCGACAGCAC
* * * * * *
30372047 GTAAGGGGGATCGGGCCGGTCCCCGGCTTGTGCATTCTGCCTCTCTGATCGGCTAAGCACCTGCA
65 GTAAGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCTGACCAGCTAAG-ACCTGCA
**
30372112 CGCTCATTTTATGGGTTGGCTTAGGCATAC
129 CGCTCATTTTATGGGTTAACTTAGGCATAC
*
30372142 GAAGTTCATTCCATGTCTAAGCA
1 GGAGTTCATTCCATGTCTAAGCA
30372165 TACGGAGTAC
Statistics
Matches: 274, Mismatches: 44, Indels: 42
0.76 0.12 0.12
Matches are distributed among these distances:
156 4 0.01
157 49 0.18
158 99 0.36
159 109 0.40
160 11 0.04
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGCACAGGACTAGACTGAGGGTTACGGCAGCAGGACCGACAGCACG
TAAGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCTGACCAGCTAAGACCTGCACG
CTCATTTTATGGGTTAACTTAGGCATAC
Found at i:30372119 original size:158 final size:159
Alignment explanation
Indices: 30371860--30372162 Score: 391
Period size: 158 Copynumber: 1.9 Consensus size: 159
30371850 AGTCGGACCT
* * * *
30371860 AGGGTTATGGCAGCGGGACCGACAGCACGTAGAGGGGGACCTGGCCGATCCCCTACTTGTGCATT
1 AGGGTTACGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGTGCATT
* *
30371925 ATGCCTCTTCGACCAGCTCAATGCCTGCACGCTCATTTTGTGGGTTAACTTAGGCATACGGAGTT
66 ATGCCTCTTCGACCAGCTCAATGCCTGCACGCTCATTTTATGGGTTAACTTAGGCATACGAAGTT
30371990 CATTCCCA-GTCTAAGATAGGACTAGACTG
131 CATT-CCATGTCTAAGATAGGACTAGACTG
* * * * *
30372019 AGGGTTACGGTAGCAGGATCGACAGCACGTA-AGGGGGATCGGGCCGGTCCCCGGCTTGTGCATT
1 AGGGTTACGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGTGCATT
* * * **
30372083 CTGCCTC-TCTGATCGGCT-AA-GCACCTGCACGCTCATTTTATGGGTTGGCTTAGGCATACGAA
66 ATGCCTCTTC-GACCAGCTCAATG--CCTGCACGCTCATTTTATGGGTTAACTTAGGCATACGAA
30372145 GTTCATTCCATGTCTAAG
128 GTTCATTCCATGTCTAAG
30372163 CATACGGAGT
Statistics
Matches: 124, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
156 1 0.01
157 7 0.06
158 89 0.72
159 27 0.22
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (159 bp):
AGGGTTACGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGTGCATT
ATGCCTCTTCGACCAGCTCAATGCCTGCACGCTCATTTTATGGGTTAACTTAGGCATACGAAGTT
CATTCCATGTCTAAGATAGGACTAGACTG
Found at i:30372177 original size:26 final size:26
Alignment explanation
Indices: 30372136--30372188 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30372126 GTTGGCTTAG
*
30372136 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTACATTCCCA-GTCTAA
*
30372162 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGAAGTACATTCCCAGTCTAA
30372188 G
1 G
30372189 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTACATTCCCAGTCTAA
Found at i:30372543 original size:26 final size:26
Alignment explanation
Indices: 30372514--30372566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30372504 GTTGACTTAG
30372514 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
30372540 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30372566 G
1 G
30372567 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30373067 original size:158 final size:158
Alignment explanation
Indices: 30372584--30373218 Score: 508
Period size: 158 Copynumber: 3.9 Consensus size: 158
30372574 CGGATCGGAT
* * * * *
30372584 CGAGGGTTGCGACAGCAGTATCGATAGCACATAGGGGGGATCGGGCCAATCCCCTA-CTTGTACA
1 CGAGGGTTGCGACAGTAGGATCGATAGCACATAGGGGGGATCGGGTCAGTCCCC-AGCTTGTGCA
* * * * *
30372648 TTCTACCTCTCCTGTCGGCTGAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
65 TTCTACCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
30372713 TTCATTCCATGTCTAAGCCCCAGCCGGAC
130 TTCATTCCATGTCTAAGCCCCAGCCAGAC
* * * ** * * *
30372742 CGAGGGTTGTGGCAGTGGGATCGATAGCACGCAGAGGGGGACCAGGTC-GATCCCCGGCTTGTGC
1 CGAGGGTTGCGACAGTAGGATCGATAGCACATAG-GGGGGATCGGGTCAG-TCCCCAGCTTGTGC
* * * * * * * * * *
30372806 A-TCATACCTATCCGATCGGCTTAGCACCTGAATGCTCGTTTCATAGGTTGACCTAGGCATACAG
64 ATTC-TACCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ** * *
30372870 AGTTAATTCC-TAGTCTAAG-ATCAGACCAAAA
128 AGTTCATTCCAT-GTCTAAGCCCCAG-CCAGAC
* * * * * *
30372901 TGAAGGTTGCAACAGTAGGATCGACAGCACATAGGGGGGATCGGGTCAGTCCCCAGCTTGCGTAT
1 CGAGGGTTGCGACAGTAGGATCGATAGCACATAGGGGGGATCGGGTCAGTCCCCAGCTTGTGCAT
* * * *
30372966 TCTGCCTCTCCGGTAGGCTGAGCACCCGCACGCTCGGTTCGTGGGTTGACTTAGACATACGGAGT
66 TCTACCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
30373031 TCATTCCATGTCTAAGCCCCAGCCAGAC
131 TCATTCCATGTCTAAGCCCCAGCCAGAC
* * ** **
30373059 CGAGGGTTGTGGCAGCAGGATCAGCAACAAAATCGATAGCACGCAGAGGGGGATCGGGTTGGTCC
1 CGAGGGTTG-CG-A-CA-G-T-AG------GATCGATAGCACATAG-GGGGGATCGGGTCAGTCC
* * * * * * * *
30373124 CCGGCTCGTGCATTATACCTCTCCGG-CTAGCTGAGCGCCCGCACGTTCGTTTCATAGGTTGACT
53 CCAGCTTGTGCATTCTACCTCTCCGGTC-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
* *
30373188 TAGGCATACGGAGTTCATCCCAAGTCTAAGC
117 TAGGCATACGGAGTTCATTCCATGTCTAAGC
30373219 ATACGGAGTT
Statistics
Matches: 360, Mismatches: 93, Indels: 35
0.74 0.19 0.07
Matches are distributed among these distances:
158 129 0.36
159 118 0.33
160 1 0.00
161 2 0.01
162 1 0.00
163 1 0.00
164 2 0.01
170 12 0.03
171 94 0.26
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGCGACAGTAGGATCGATAGCACATAGGGGGGATCGGGTCAGTCCCCAGCTTGTGCAT
TCTACCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCAGAC
Found at i:30373221 original size:26 final size:26
Alignment explanation
Indices: 30373191--30373243 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30373181 GTTGACTTAG
30373191 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
30373217 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30373243 G
1 G
30373244 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30373731 original size:26 final size:26
Alignment explanation
Indices: 30373681--30373732 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30373671 GTTGGCTTGG
*
30373681 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30373707 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
30373733 TATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30373916 original size:26 final size:26
Alignment explanation
Indices: 30373880--30373929 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
30373870 GACTTAGGCT
*
30373880 TACGAAGTTCATTCCTAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
*
30373906 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
30373930 ATCGAATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:30375511 original size:157 final size:157
Alignment explanation
Indices: 30374986--30375511 Score: 535
Period size: 159 Copynumber: 3.3 Consensus size: 157
30374976 TAAGCACATA
* * * * *
30374986 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAATAGGATCGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATTAGACCGAACTGAGGGTTGCGGCAACAGGATCGACAGCACGCA
* * * *
30375051 GAGGGGACCAGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTAAGTGCCTGCACGC
66 GAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTAAGTGCCCGCACGC
* *
30375116 -CTGTTTCATGGGTTGGCTTAGGCATAGG
131 TC-GTTTCGTGGGTT-GCTTAGGCATACG
** ** * * * *
30375144 GAGTTCATT-CCATGTCTAAGCCCTAG-CCGAACCT-AGGGTTATGGTAGCGGGACCGACAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ATTAGACCGAA-CTGAGGGTTGCGGCAACAGGATCGACAGCAC
* * * * * **
30375206 GCAGAAAGGGACCGGGCCGATCCCCTG-GTTGCGTATTATGCCTCTCCGACCAGCTCAGCACCCG
63 GCAG-AGGGGACCGGGCCGATCCCC-GACTTGCGCATTCTGCCTCTCCGACCAGCTAAGTGCCCG
30375270 CACGCTCGTTTCGTGGGTTGACTTAGGCATACG
126 CACGCTCGTTTCGTGGGTTG-CTTAGGCATACG
* * * *
30375303 GAGTTCATTCCCAGTCTAATATT-GAATCGAACTGAGGGTTGCGGTAACAGGATCGACAGCACAC
1 GAGTTCATTCCCAGTCTAAGATTAG-ACCGAACTGAGGGTTGCGGCAACAGGATCGACAGCACGC
* * * * * * * *
30375367 AG-GGGGATCGGGCCGGTCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACA
65 AGAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTAAGTGCCCGCACG
*
30375431 CTCGTTTTGTGGGTTAGCTTAGGCATACG
130 CTCGTTTCGTGGGTT-GCTTAGGCATACG
* * *
30375460 GAGTTCATTCCCAGTCTAAGATTAGACCGGACTAAGGGTTGCGGCAGCAGGA
1 GAGTTCATTCCCAGTCTAAGATTAGACCGAACTGAGGGTTGCGGCAACAGGA
30375512 CCAGTAGCAG
Statistics
Matches: 297, Mismatches: 57, Indels: 29
0.78 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 120 0.40
158 49 0.16
159 122 0.41
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATTAGACCGAACTGAGGGTTGCGGCAACAGGATCGACAGCACGCA
GAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTAAGTGCCCGCACGC
TCGTTTCGTGGGTTGCTTAGGCATACG
Found at i:30375678 original size:170 final size:169
Alignment explanation
Indices: 30375350--30375682 Score: 377
Period size: 170 Copynumber: 2.0 Consensus size: 169
30375340 GTTGCGGTAA
*
30375350 CAGGATCGACAGCACACAGGGGGATCGGGCCGGTCCTCGACTTACGCATTCTGCCTCTCCGATCG
1 CAGGATCGACAGCACACAGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGATCG
* * * *
30375415 GCTGAGTGCCCGCACACTCGTTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 GCTGAGCGCCCGCACACTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * *
30375480 ATTAGACCGGACTAAGGGTTGCGGCAGCAGGACCAGTAG
131 ATCAGACCGGACCAAGGGTTACGGCAGCAGGACCAGTAG
** * * * *
30375519 CAGGATCGACAGCATGCAGGGGGGATCGGGCTGATCC-CTGACTTACGTATTTTGCCTCTCTGAT
1 CAGGATCGACAGCACACA-GGGGGATCGGGCCGATCCTC-GACTTACGCATTCTGCCTCTCCGAT
* ** * * *
30375583 TGGCTGAGCGTTCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCT
64 CGGCTGAGCGCCCGCACACTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCCA-GTCT
* * * *
30375647 -AGGTCCCAG-TCGGACCGAGGGTTATGGCAGCAGGAC
128 AAGAT--CAGACCGGACCAAGGGTTACGGCAGCAGGAC
30375683 AGGAAGTGGA
Statistics
Matches: 135, Mismatches: 24, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
169 23 0.17
170 110 0.81
171 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (169 bp):
CAGGATCGACAGCACACAGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGATCG
GCTGAGCGCCCGCACACTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
ATCAGACCGGACCAAGGGTTACGGCAGCAGGACCAGTAG
Found at i:30376142 original size:159 final size:157
Alignment explanation
Indices: 30375891--30376177 Score: 362
Period size: 159 Copynumber: 1.8 Consensus size: 157
30375881 TACGGCAGTA
* * ** *
30375891 GGATCGACAGCATGCAAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGGC
1 GGATCGACAGCACGCAAGGGGACCGGGCCGATCCCCGGCTTGCGCATAATGCCTCTCTCGTCGGC
* * * * * * * *
30375956 TGAGCACTTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATT-CCATGTCTAAGC
66 TGAACACCTGAAAGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGC
30376020 CCCAATCGGACCGAGGCTTGTGGCATCG
130 CCCAATCGGACCGAGGCTTGTGGCATCG
*
30376048 GGATCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATAATGCCTCTC-CGTCC
1 GGATCGACAGCACGCA-A-GGGGACCGGGCCGATCCCCGGCTTGCGCATAATGCCTCTCTCGT-C
* * * *
30376112 GGCTTAACGCCTGAAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
63 GGCTGAACACCTGAAAGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
30376177 G
128 G
30376178 ATCGGACCGG
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
157 14 0.13
158 3 0.03
159 88 0.81
160 3 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GGATCGACAGCACGCAAGGGGACCGGGCCGATCCCCGGCTTGCGCATAATGCCTCTCTCGTCGGC
TGAACACCTGAAAGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCC
CCAATCGGACCGAGGCTTGTGGCATCG
Found at i:30376334 original size:26 final size:26
Alignment explanation
Indices: 30376298--30376350 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30376288 GTTGGCTTAG
30376298 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
30376324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30376350 G
1 G
30376351 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30376819 original size:26 final size:26
Alignment explanation
Indices: 30376789--30376841 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30376779 GTTGACTTAG
*
30376789 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30376815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30376841 G
1 G
30376842 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30376957 original size:26 final size:26
Alignment explanation
Indices: 30376920--30376972 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30376910 GTTGGCTTAG
*
30376920 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
30376946 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
30376972 G
1 G
30376973 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:30377151 original size:26 final size:26
Alignment explanation
Indices: 30377115--30377167 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30377105 GTTGGCTTAG
*
30377115 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
30377141 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
30377167 G
1 G
30377168 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:30377507 original size:159 final size:157
Alignment explanation
Indices: 30377149--30377539 Score: 353
Period size: 159 Copynumber: 2.5 Consensus size: 157
30377139 AAGCATAAGG
* * * * **
30377149 AGTTCATTCCCAGTCTAAGATCGGACTGGACTG-AGTGTTATGGCAGCTAGATCGACAGCATGCA
1 AGTTCATTCCCAGTCTAAGATCAGAC-GAACCGAAG-GTTGTGGCAGCTAGATCGACAGCACCCA
* * * * * *
30377213 GGGGGGACCGGGCCTATCCCCGGCTTGTACATTCTGCCTCTCCGGCCGGATGAGCGCCCGTACAC
64 GGGGGGACCGAGCCTATCCCCGACTTGCACATTATGCCTCTCCCGCCGGATGAGCGCCCGAACAC
* * * * *
30377278 CCGTTTCGTGGGTTGGCTTAGGCATAGGG
129 CCGTTTCATAGGTTGACTTAGGCATACGA
* ** * *
30377307 AGTTTATT-CCATGTCTAAGCCCCAG-CCAGACC-AAGGATTGTGGCATCTAGATCGACAGCACC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACGA-ACCGAAGG-TTGTGGCAGCTAGATCGACAGCACC
* * * * *
30377369 CTGAGGGGGACCGAG-CTGATCCCCGACTTGCGCATTATGCCTCTCCCTCCGGCTTAGCGCCCGA
62 CAG-GGGGGACCGAGCCT-ATCCCCGACTTGCACATTATGCCTCTCCCGCCGGATGAGCGCCCGA
* *
30377433 ACGCTCGTTTCATAGGTTGACTTAGGCATACGA
125 ACACCCGTTTCATAGGTTGACTTAGGCATACGA
* * **
30377466 AGTTCATTCCCAGTCTAAGATCAGATCGAACCGAAGGTTGTGACAG-TAGGATCAACAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCAGA-CGAACCGAAGGTTGTGGCAGCTA-GATCGACAGCACCCA
30377530 GGGGGGACCG
64 GGGGGGACCG
30377540 GGTCGGTCCT
Statistics
Matches: 182, Mismatches: 39, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
157 4 0.02
158 58 0.32
159 111 0.61
160 9 0.05
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGACGAACCGAAGGTTGTGGCAGCTAGATCGACAGCACCCAGG
GGGGACCGAGCCTATCCCCGACTTGCACATTATGCCTCTCCCGCCGGATGAGCGCCCGAACACCC
GTTTCATAGGTTGACTTAGGCATACGA
Found at i:30378146 original size:26 final size:26
Alignment explanation
Indices: 30378116--30378168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30378106 GTTGACTTAG
30378116 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30378142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30378168 G
1 G
30378169 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30379230 original size:26 final size:26
Alignment explanation
Indices: 30379191--30379269 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
30379181 GTTGACTTAG
30379191 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30379217 GCGTACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30379243 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30379269 G
1 G
30379270 ATCGGACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30379772 original size:157 final size:157
Alignment explanation
Indices: 30379243--30379764 Score: 574
Period size: 157 Copynumber: 3.3 Consensus size: 157
30379233 CCCAATCTAA
* * * * *
30379243 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAAGATCGGCA
* * * * * * * *
30379308 GCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCGTATTCTGCCTCTCTGGCCGACTGAGCGCC
66 GCACGTA-GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
*
30379373 CGCACGGC-CGTTTTGTGGGTTGGCTTAG
130 CGCAC-GCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
30379401 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAG-CCGGATCGAGGGTTGTGGCAGCAAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA--TCAGACCGGATCGAGGGTTACGACAGCAAGATCG
* * * * *
30379463 GCAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTC-CCTGACC-AGTTC
63 GCAGCACGT--AGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-GACCGA-CTG
* * *
30379526 AGCACCCGCACGCTCATTTCATGGGTTGACTTAG
124 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
30379560 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTACGATAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTACGACAGCAAGATCGGC
* *
30379624 AGCACGTAGGGGGACCGGGTCGGTCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
65 AGCACGTAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
30379689 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
30379717 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CAGAGGGTTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTA
30379765 TGGTAGCAGT
Statistics
Matches: 301, Mismatches: 49, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
157 119 0.40
158 63 0.21
159 114 0.38
160 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAAGATCGGCA
GCACGTAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30379937 original size:26 final size:26
Alignment explanation
Indices: 30379900--30379952 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30379890 GTTGACTTAG
30379900 GCATACGTAGTTCA-TCCCTAGTCTAA
1 GCATACGTAGTTCATTCCC-AGTCTAA
30379926 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATAC-GTAGTTCATTCCCAGTCTAA
30379952 G
1 G
30379953 ATCAAATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCCAGTCTAA
Found at i:30381350 original size:159 final size:158
Alignment explanation
Indices: 30380981--30381353 Score: 375
Period size: 159 Copynumber: 2.4 Consensus size: 158
30380971 CCCAGTCTAA
** * *
30380981 GCATACGAAGTTCATTCTGAATCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * **
30381046 GCACGCAGGGAGGACCGGGTCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACT
66 GCACGCAGGGAGGACCGGGTCGATCCCCAGCTTGCGCATTATACCTCTCCGGCCGGTCAAGCACT
*
30381111 CGCACGCCCTTTGCATGGGTTGGCTTAG
131 CGCACGCCCTTTGCATGGGTTGACTTAG
* * ** * **
30381139 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGTGGGA-CTG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC-G
* * * * * * *
30381201 GCAGCAC-CTAGAGGGGGATCGGGTTGATCCCCAGCTTGTGCATTATGCCTCTCTGGCCGGCTCA
63 ACAGCACGC-AG-GGAGGACCGGGTCGATCCCCAGCTTGCGCATTATACCTCTCCGGCCGG-TCA
*
30381265 ACGC-CT-GCACGCTCGTTT-CATGGGTTGACTTAG
125 A-GCACTCGCACGC-CCTTTGCATGGGTTGACTTAG
*
30381298 GCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGTGGCAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCAGCA
30381354 AGACCAGTAG
Statistics
Matches: 171, Mismatches: 33, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
157 3 0.02
158 54 0.32
159 101 0.59
160 11 0.06
161 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGAGGACCGGGTCGATCCCCAGCTTGCGCATTATACCTCTCCGGCCGGTCAAGCACT
CGCACGCCCTTTGCATGGGTTGACTTAG
Found at i:30381493 original size:26 final size:26
Alignment explanation
Indices: 30381457--30381509 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30381447 TTTGACTTAG
30381457 GCATACAGAGTCCATCCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
* * * *
30381483 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
30381509 G
1 G
30381510 ATCGAATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCCAGTCTAA
Found at i:30381786 original size:159 final size:158
Alignment explanation
Indices: 30381622--30382152 Score: 387
Period size: 159 Copynumber: 3.3 Consensus size: 158
30381612 GCCTGCACAT
***
30381622 CCATTTTGTCGGTTGGCTTAATTATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC-GAACCAA
1 CCATTTTGT-GGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAAGCCCCAGACCAG-ACCAA
* ** * * *
30381685 GGGTTGTGGCAACGGGACCGGTAGCATGCTGA-GGGGGA-TCGGGCCAATCCCCGACTTGCGCAT
63 GGGTTGTGGCAACAGGACCGACAGCACG-TAAGGGGGGACT-GGGCCAATCCCCGACTTACGCAT
30381748 TATGCCTCTCCGGCCTGCTCAACGCCCGCACGC
126 TATGCCTCTCCGGCCTGCTCAACGCCCGCACGC
* * * ** ** *
30381781 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAG
1 CCATTTTGT-GGTTGGCTTAGGCATAGGGAGTTCATT-CCAGTCTAAGCCCCAGACCAGACCAAG
* * * *** *
30381845 GGTTGTGGCAGCAGGATCGACAGTACGTAAGGGGGGACTGGGCTGGTCCCCGACTTACGCATTCT
64 GGTTGTGGCAACAGGACCGACAGCACGTAAGGGGGGACTGGGCCAATCCCCGACTTACGCATTAT
* ** *
30381910 GCCTCTCCGGCCTGCTGAGTGCCCGCATGC
129 GCCTCTCCGGCCTGCTCAACGCCCGCACGC
* * *
30381940 CCATTTTGTGGATTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAG-CAAGATCGAG
1 CCATTTTGTGG-TTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAAGCCCCAGACCAGACCAAG
* * * * * * * * * *
30382004 GGTTGTGGCAGCGGGACTGACAACGCGCAGAGGGGGG-CCGAGG-TAATCCCCGGCTTGCGCATT
64 GGTTGTGGCAACAGGACCGACAGCACGTA-AGGGGGGACTG-GGCCAATCCCCGACTTACGCATT
* * * * * ** *
30382067 CTGCCTCTCTGGCCGGTTGAGTGCCCACACGC
127 ATGCCTCTCCGGCCTGCTCAACGCCCGCACGC
*** * *
30382099 TTGTTTCATG-GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAG
1 CCATTT--TGTGGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAAGCCCCAG
30382153 TTAGAATGAG
Statistics
Matches: 299, Mismatches: 61, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
158 9 0.03
159 269 0.90
160 19 0.06
161 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CCATTTTGTGGTTGGCTTAGGCATAGGGAGTTCATTCCAGTCTAAGCCCCAGACCAGACCAAGGG
TTGTGGCAACAGGACCGACAGCACGTAAGGGGGGACTGGGCCAATCCCCGACTTACGCATTATGC
CTCTCCGGCCTGCTCAACGCCCGCACGC
Found at i:30381849 original size:504 final size:501
Alignment explanation
Indices: 30380926--30381857 Score: 1243
Period size: 504 Copynumber: 1.9 Consensus size: 501
30380916 GGCTGGGTGT
** * * *
30380926 CCGCACGCTCGTATGGTGGGTTAACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGAAG
1 CCGCACGCTCGTATCATGGGTTAACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCATAAGAAG
*
30380991 TTCATTCTGAATCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGG
66 TTCATTCTGAATCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGG
* * *
30381056 AGGACCGGGTCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACTCGCACGCCCT
131 AGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGTTGAGCACTCGCACGCCCT
* * ** * **
30381121 TTGCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
196 TTG-ATCGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCAAGGGTT
** * *** *
30381186 GTGGCAGTGGGACTGGCAGCACCTAGAGGGGGATCGGGTTGATCCCCAGCTTGTGCATTATGCCT
260 GTGGCAACGGGACCGGCAGCACCTAGAGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCT
* * *
30381251 CTCTGGCCGGCTCAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC
325 CTCCGGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC
* **
30381316 CAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAAGACCAGTAGCAGGATCGATAGCACAT
390 CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGACCAGTAGCAGGATCGATAGCACAT
30381381 TCTGCGCATTTTGCCTCTCCAATCGACCTCTCCGGTCGATTGAGCAC
455 TCTGCGCATTTTGCCTCTCCAATCGACCTCTCCGGTCGATTGAGCAC
* * *
30381428 CCGCACGCTCGTTTCATGGTTTGACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCATATAG-A
1 CCGCACGCTCGTATCATGGGTTAACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCATA-AGAA
* * * * *
30381492 GTTCATTCCT-AGTCTAAGATC-GAATTGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCGCGCA
65 GTTCATT-CTGAATCTAAGATCAG-ATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * *
30381555 GGGGGGGGACCGTGCCGATCCCCGGCTTGCGCATTCTCCCTCTCCGATCGGTTGAGTGC-CT-GC
128 --GGGAGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGTTGA--GCACTCGC
* * **
30381618 ACATCCATTTTG-TCGGTTGGCTTAATTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAAC
189 AC-GCC-CTTTGATCGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAAC
* *
30381682 CAAGGGTTGTGGCAACGGGACCGGTAGCATGCT-GAGGGGGATCGGGCCAATCCCC-GACTTGCG
252 CAAGGGTTGTGGCAACGGGACCGGCAGCA-CCTAGAGGGGGATCGGGCCAATCCCCAG-CTTGCG
* *
30381745 CATTATGCCTCTCCGGCCTGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-A
315 CATTATGCCTCTCCGGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
30381809 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA
380 -AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA
30381858 GGATCGACAG
Statistics
Matches: 369, Mismatches: 49, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
501 1 0.00
502 106 0.29
503 5 0.01
504 245 0.66
505 6 0.02
506 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (501 bp):
CCGCACGCTCGTATCATGGGTTAACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCATAAGAAG
TTCATTCTGAATCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGG
AGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGTTGAGCACTCGCACGCCCT
TTGATCGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCAAGGGTTG
TGGCAACGGGACCGGCAGCACCTAGAGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTC
TCCGGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
AGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGACCAGTAGCAGGATCGATAGCACATT
CTGCGCATTTTGCCTCTCCAATCGACCTCTCCGGTCGATTGAGCAC
Found at i:30382074 original size:318 final size:315
Alignment explanation
Indices: 30381491--30382562 Score: 974
Period size: 318 Copynumber: 3.4 Consensus size: 315
30381481 AAGCATATAG
* ** * * * *
30381491 AGTTCATTCCTAGTCTAAGATC-GAATTGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCGCGCA
1 AGTTCATTCCCAGTCTAAGATCAG-ATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
* * * * * *
30381555 GGGGGGGGACCGTGCCGATCCCCGGCTTGCGCATTCTCCCTCTCCGATCGGTTGAGTGCCTGCAC
65 -AGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCAC
* *** * * * *
30381620 ATCCATTTTGTCGG-TTGGCTTAATTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCA
129 ACCCATTTTGT-GGATTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCAG-ACCG
* ** * * * *
30381684 AGGGTTGTGGCAACGGGACCGGTAGCATGCTGAGGGGGATCGGGCCAATCCCCGACTTGCGCATT
192 AGGGTTGTGGCAGCGGGA-CGACAGCACGCAGAGGGGGATCGGG-TAATCCCCGGCTTGCGCATT
* * *
30381749 ATGCCTCTCCGGCCTGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-A
255 ATGCCTCTCCGGCCAGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* *
30381809 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGTACGTA
1 -AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
* * * * ** * **
30381874 AGGGGGGACTGGGCTGGTCCCCGACTTACGCATTCTGCCTCTCCGGCCTGCTGAGTGCCCGCATG
65 AGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACA
*
30381939 CCCATTTTGTGGATTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCAAGATCGAG
130 CCCATTTTGTGGATTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGC-AGACCGAG
* * ** *
30382004 GGTTGTGGCAGCGGGACTGACAACGCGCAGAGGGGGGCCGAGGTAATCCCCGGCTTGCGCATTCT
194 GGTTGTGGCAGCGGGAC-GACAGCACGCAGAGGGGGATCG-GGTAATCCCCGGCTTGCGCATTAT
* * * * * * * * *
30382069 GCCTCTCTGGCCGGTTGAGTGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGA
257 GCCTCTCCGGCCAGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
** * ** * * * *
30382128 AGTTCATT-CCATGTCTAAGCCCCAG-TTAGAATGAGGGTTGCGACAGCAGGAAT-GGCAACACG
1 AGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGCAGG-ATCGACAGCACG
* * * * * ** ** *
30382190 -CAGGGGGGACCAGGTCGATCCTC-AGCTTGCGTATTCTTTCTCTCC-AGTCGGCTGAGCACCCA
63 TAAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGTGCCCG
* ** ** *
30382252 CACACTCATTTCATGGATTGGCTTAGGCATACAGAGTTCATTCCACATCTAAGCCCCAGCCAGAC
126 CACACCCATTTTGTGGATTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAG-CAGAC
* * * ** * * * * * * *
30382317 CGAGGGTTCTAGTAGCGACACGACAGCACGTAGAGAGGGATTGGCTTGATCCCCGGGTTGCGTAT
190 CGAGGGTTGTGGCAGCGGGACGACAGCACGCAGAGGGGGATCGG-GTAATCCCCGGCTTGCGCAT
* *
30382382 TATGCCTCTCCGGTCAGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
254 TATGCCTCTCCGGCCAGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* * * *
30382444 AGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACCTAA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAA
* * * * * *
30382509 GGAGGCACCGGACCGGTCCCTGACTTGCGCATTCTGCCTCTCCGATCTGCTGAG
66 GGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAG
30382563 CACCCGTACG
Statistics
Matches: 588, Mismatches: 146, Indels: 40
0.76 0.19 0.05
Matches are distributed among these distances:
315 5 0.01
316 122 0.21
317 160 0.27
318 238 0.40
319 62 0.11
320 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (315 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAA
GGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACAC
CCATTTTGTGGATTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCAGACCGAGGG
TTGTGGCAGCGGGACGACAGCACGCAGAGGGGGATCGGGTAATCCCCGGCTTGCGCATTATGCCT
CTCCGGCCAGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
Found at i:30382769 original size:158 final size:158
Alignment explanation
Indices: 30381732--30382991 Score: 645
Period size: 159 Copynumber: 7.9 Consensus size: 158
30381722 ATCGGGCCAA
* * ** * * * * * * **
30381732 TCCCCGACTTGCGCATTATGCCTCTCCGGCCTGCTCAACGCCCGCACGCTCATTTCGTGGGTTGA
1 TCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAATGCTCGTTTAATGGGTTGA
* * * *
30381797 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* *
30381862 CGACAGTACGTAAGGGGGGACTGGGCTGG
131 CGACAGCACGT-AGGGGGGACTGGGCCGG
* * ** * * * * * ** * *
30381891 TCCCCGACTTACGCATTCTGCCTCTCCGGCCTGCTGAGTGCCCGCATGCCCATTTTGTGGATTGG
1 TCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAATGCTCGTTTAATGGGTTGA
* *** ** * * *
30381956 CTTAGGCATAGGGAGTTCATT-CCACGTCTAAGCCCCAG-CAAGATCGAGGGTTGTGGCAGCGGG
66 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * * ***
30382019 A-CTGACAACGCGCAGAGGGGGGCCGAGG-TAA
129 ATC-GACAGCACGTAG-GGGGGACTG-GGCCGG
** * ** * * * * *
30382050 TCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGTGCCC-ACACGCTTGTTTCATGGGTTG
1 TCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGA-ATGCTCGTTTAATGGGTTG
* * *** *** ** *
30382114 GCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCCAG-TTAGAATGAGGGTTGCGACAGCAG
65 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACCGGACCGAGGGTTGCGGCAGCAG
* * * ** * *
30382177 GAAT-GGCAACACGCAGGGGGGACCAGGTCGA
128 G-ATCGACAGCACGTAGGGGGGACTGGGCCGG
* * * ** * ** * * *
30382208 TCCTCAGCTTGCGTATTCTTTCTCTCC-AGTCGGCTGAGCACCC-ACACACTCATTTCATGGATT
1 TCCCCAACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGA-ATGCTCGTTTAATGGGTT
* * *** * * *
30382271 GGCTTAGGCATACAGAGTTCATTCCACA-TCTAAGCCCCAG-CCAGACCGAGGGTT-C--TAGTA
64 GACTTAGGCATACGGAGTTCATTCC-CAGTCTAAG-ATTAGACCGGACCGAGGGTTGCGGCAGCA
* * * * *
30382331 GCGACACGACAGCACGTAGAGAGGGA-TTGGCTTGA
127 G-GA-TCGACAGCACGTAG-GGGGGACTGGGC-CGG
*** * * * * * ** * **
30382366 TCCCCGGGTTGCGTATTATGCCTCTCCGGTCAGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGA
1 TCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAATGCTCGTTTAATGGGTTGA
* * ** * *
30382431 CTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * *
30382496 CGACAGCACCTAAGGAGGCACCGGACCGG
131 CGACAGCACGT-AGGGGGGACTGGGCCGG
** * * * *
30382525 TCCCTGACTTGCGCATTCTGCCTCTCCGATCTGCTGAGCACCCGTACGCTCGTTTAATGGGTTGA
1 TCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAATGCTCGTTTAATGGGTTGA
* *
30382590 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCGGCAGCAGGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* *
30382655 CGACAGCAGGTAGGGGGGACTGGGTCGG
131 CGACAGCACGTAGGGGGGACTGGGCCGG
* * * * * *
30382683 TCCCCAACTTGTGCGTTCTGCCTCTCTGACCGGCTGAGCGCCCGCATGCCCGTTCT-ATGGGTTG
1 TCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAATGCTCGTT-TAATGGGTTG
** * * * ** * ** **
30382747 GTTTAGGAATAGGGAGTTCATT-CCATGTGTAAGCCCTAG-CCGGGCCGAGGGTTATGGCAGTGG
65 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACCGGACCGAGGGTTGCGGCAGCAG
* * * * *
30382810 GA-CTGATAGCACGCAGAGGAGGA-TCGAGCCGA
128 GATC-GACAGCACGTAG-GGGGGACT-GGGCCGG
* * * **
30382842 TCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTTAGCGCCCGAATGCTCGTTTCGTGGGTTGA
1 TCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAATGCTCGTTTAATGGGTTGA
* * ** *
30382907 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTAAGGGTTGCGGTAGCAGGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGAT
30382972 CGACAGCACGTAGGGGGGAC
131 CGACAGCACGTAGGGGGGAC
30382992 CGAATCGATC
Statistics
Matches: 853, Mismatches: 211, Indels: 74
0.75 0.19 0.07
Matches are distributed among these distances:
155 5 0.01
156 1 0.00
157 22 0.03
158 318 0.37
159 485 0.57
160 18 0.02
161 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
TCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAATGCTCGTTTAATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGAT
CGACAGCACGTAGGGGGGACTGGGCCGG
Found at i:30383120 original size:26 final size:26
Alignment explanation
Indices: 30383083--30383135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30383073 GTTGACTTAG
*
30383083 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
30383109 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
30383135 G
1 G
30383136 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30383402 original size:159 final size:158
Alignment explanation
Indices: 30383148--30383452 Score: 412
Period size: 159 Copynumber: 1.9 Consensus size: 158
30383138 TGGATTGGAT
* * * *
30383148 TGAGGGTTGCGGCAGCAGGATCAGTAGCACGCAAGGGGGACCGGGCCAATCCTCGGCTTGCGCAT
1 TGAGGGTTGCGGCAGCAGGACCAGCAGCACACAAGGGGGACCGGGCCAATCCTCAGCTTGCGCAT
** * * * * * *
30383213 TATGCCTCTCCGGGTGACTGAATGCTCGCACATTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TATGCCTCTCCGACTGACTGAACGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGT
30383278 TCATTCCATGTCTAAGCCCCAGCCGAAC
131 TCATTCCATGTCTAAGCCCCAGCCGAAC
* * * *
30383306 TGAGGGTTGTGGCAGCGGGACCAGCAGCACACAGAGGGGGACCGGGCCGATCCTCAGCTTGTGCA
1 TGAGGGTTGCGGCAGCAGGACCAGCAGCACACA-AGGGGGACCGGGCCAATCCTCAGCTTGCGCA
* * * * *
30383371 TTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATTCGGAG
65 TTATGCCTCTCCGACTGACTGAACGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAG
30383436 TTCATTCCATGTCTAAG
130 TTCATTCCATGTCTAAG
30383453 TATACGGAGT
Statistics
Matches: 125, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
158 28 0.22
159 97 0.78
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
TGAGGGTTGCGGCAGCAGGACCAGCAGCACACAAGGGGGACCGGGCCAATCCTCAGCTTGCGCAT
TATGCCTCTCCGACTGACTGAACGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCGAAC
Found at i:30383564 original size:11 final size:11
Alignment explanation
Indices: 30383548--30383584 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
30383538 CCTGGGGTAC
30383548 CATCGTCGGAG
1 CATCGTCGGAG
30383559 CATCGTCGGAG
1 CATCGTCGGAG
*
30383570 CATCGTTGGAG
1 CATCGTCGGAG
30383581 CATC
1 CATC
30383585 ACTGGAGAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:30384202 original size:26 final size:26
Alignment explanation
Indices: 30384172--30384224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30384162 GTTGACATAG
*
30384172 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30384198 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30384224 G
1 G
30384225 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30384927 original size:88 final size:88
Alignment explanation
Indices: 30384775--30384948 Score: 249
Period size: 88 Copynumber: 2.0 Consensus size: 88
30384765 GGGACCGGGC
* * * * * *
30384775 CGATCCCCGGCTTGCGCATTATGCCTCTTTGACCGGCTCTGTGCTCGCACGCTCGTTTCTTGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGT
30384840 TGACTTATGCATACGGAGTTCGT
66 TGACTTATGCATACGGAGTTCGT
* * * *
30384863 CGATCCTCGGCTTGCTCATTATGCCTCTTCGATCGATTCAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGT
*
30384928 TGACTTATGCATACGTAGTTC
66 TGACTTATGCATACGGAGTTC
30384949 ATTCTCAGTC
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.13, C:0.30, G:0.25, T:0.33
Consensus pattern (88 bp):
CGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTATGCATACGGAGTTCGT
Found at i:30385130 original size:26 final size:26
Alignment explanation
Indices: 30385094--30385146 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30385084 GTTGGCTTAG
30385094 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30385120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30385146 G
1 G
30385147 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30391661 original size:26 final size:26
Alignment explanation
Indices: 30391631--30391681 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30391621 TTGGCTTAGG
30391631 CATACGGAGTTCATTC-CATGTCTAAC
1 CATACGGAGTTCATTCACA-GTCTAAC
30391657 CATACGGAGTTCATTCACAGTCTAA
1 CATACGGAGTTCATTCACAGTCTAA
30391682 GATCAGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCACAGTCTAAC
Found at i:30391784 original size:185 final size:184
Alignment explanation
Indices: 30391473--30391840 Score: 504
Period size: 185 Copynumber: 2.0 Consensus size: 184
30391463 TTTACTTAGG
* * * * * * *
30391473 CATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGTAGCAGGATCGATAG
1 CATACGGAGTTCATTCACAGTCTAAGATCGAACCAGACCAAAGGTTACGGCAGCAGGATCGACAG
* * * * * **
30391538 CATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
66 CACGAAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGACTCTCCGACCGGCTGAGCGCCC
* * *
30391603 GTATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAC
131 GCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAC
* *
30391657 CATACGGAGTTCATTCACAGTCTAAGATC-AGACCAGACCAAAGGTTACGGCAGTAGGATCGGCA
1 CATACGGAGTTCATTCACAGTCTAAGATCGA-ACCAGACCAAAGGTTACGGCAGCAGGATCGACA
* *
30391721 GCACGAAGGGGGGGATCGAGCCTATCCCCGGCTTGCACATTCTGACTCTCCGACCGGCTGAGCGC
65 GCACGAA-GGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGACTCTCCGACCGGCTGAGCGC
* *
30391786 CCGCACGGTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
30391841 GCCCCAGCCG
Statistics
Matches: 159, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
183 1 0.01
184 58 0.36
185 100 0.63
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
CATACGGAGTTCATTCACAGTCTAAGATCGAACCAGACCAAAGGTTACGGCAGCAGGATCGACAG
CACGAAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGACTCTCCGACCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAC
Found at i:30392028 original size:26 final size:26
Alignment explanation
Indices: 30391999--30392049 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30391989 GTTGACTTTG
30391999 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
30392025 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
30392050 TGATCGGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30392589 original size:159 final size:158
Alignment explanation
Indices: 30392025--30392684 Score: 607
Period size: 158 Copynumber: 4.2 Consensus size: 158
30392015 CCTAGTCTAA
* * * * *
30392025 GCATACGGAGTTCATTCCCAGTCTATGATCGGATCGGATCGAGGGTTACGGCTGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGATCGACA
* * * ** * *
30392090 GCACGCAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCT
66 GCACGCAAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACC
* * *
30392155 CGCACGCTCATTTTGTGGGTTGACTTGG
131 CGCACGCTCGTTTCGTGGGTTGACTTAG
*** *
30392183 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGATCGACA
* * * * * * * * *
30392248 GCACGTAACGGGGATCGAGCCGATCCCC-GACTTGCACATTCTTCCTCTCC-AGCCAGTTAAGCA
66 GCACGCAAGGGGGATCGGGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGA-CCGGCTCAGCA
* *
30392311 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * ** *
30392341 GCAT-GGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGACTGAGGGTTGTGGCAGT-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTACGGCAGTAG-GATCG
** * * * *
30392402 GTAGCACGCAGAGGGGGATCGGGTCGATCCTCAGCTTACGCATTATGCCTCTTCGACCGGCTCAG
63 ACAGCACGCA-AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAG
* * * *
30392467 CACCCGTATGCTCGTTTCATGGGTTGACTTAT
127 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
30392499 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGATCGACA
* * * * * * *
30392564 GCACACAGGGGGGGA-CTGGGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGATCGACTGAGCG
66 GCACGCA-AGGGGGATC-GGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
*** * * *
30392628 CCTATACGCTTGTTTCGTTGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
30392658 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
30392685 CATACAGAGT
Statistics
Matches: 400, Mismatches: 88, Indels: 27
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 47 0.12
158 208 0.52
159 137 0.34
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:30392688 original size:26 final size:26
Alignment explanation
Indices: 30392658--30392710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30392648 GTTGGCTTAG
*
30392658 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30392684 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30392710 G
1 G
30392711 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30393697 original size:159 final size:159
Alignment explanation
Indices: 30393444--30393945 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 159
30393434 GATCGGATCA
* * * * *
30393444 GACCAAGGGTTGCGGCAGCAGGCATCGGCAGCACGCA-AGGGGGATCGGGCCAATCCCCGGCTTG
1 GACCGAGGGTTGTGGCAGCAGG-ACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTG
* ** * * *
30393508 CGCATTCTGCCTCTCCAACTAGCTGAGCACCCGCACGC-CTGTTTCATGTGTTGGCTTAGGCATA
65 TGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACGCTC-GTTTCGTGGGTTGGCTTAAGCATA
* *
30393572 GGGAGTTCATTCCATGTCTAACCCCTAGTAG
129 CGAAGTTCATTCCATGTCTAACCCCTAGTAG
* * * * * *
30393603 GACCGAGGGTTGTGGCGGCGGGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCCTGGCTTGT
1 GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGT
* * * * * *
30393668 GCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAAGCATATG
66 GCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACG
**
30393733 AAGTTCATTCC-TAGTCT-A-CGATCAG-ACCG
131 AAGTTCATTCCAT-GTCTAACCCCT-AGTA--G
* * * * * * **
30393762 AACTGATGGTTGTGACAGCAGGATCGATAGCACGCAG-GGAGGGATCGGGCCGATCCCCGATTTG
1 GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGG-GGGATCGGGCCGATCCCCGGCTTG
* * *
30393826 TTCATTCTACCTCTCCAACCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAAGCATAC
65 TGCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATAC
*
30393891 GAAGTTCATTCCATGTCTAAGCCCC-AGTCG
130 GAAGTTCATTCCATGTCTAA-CCCCTAGTAG
* * *
30393921 GACCGCGGGTTGTGGTAGCAAGACC
1 GACCGAGGGTTGTGGCAGCAGGACC
30393946 AGCAGTGGGA
Statistics
Matches: 271, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 17 0.06
159 245 0.90
160 5 0.02
162 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGT
GCATTCTGCCTCTCCAACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACG
AAGTTCATTCCATGTCTAACCCCTAGTAG
Found at i:30396239 original size:26 final size:26
Alignment explanation
Indices: 30396203--30396255 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30396193 GTTGACTTAG
*
30396203 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30396229 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30396255 G
1 G
30396256 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30396538 original size:159 final size:157
Alignment explanation
Indices: 30396361--30396731 Score: 363
Period size: 158 Copynumber: 2.4 Consensus size: 157
30396351 TGAGCGCTCG
* *
30396361 CACAC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
1 CACACGCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
** ** * *
30396425 CTGAGGGTTGTGGCAGC-GAGACCGGCAGCACACAGAGG-GGGATCGGGTAGATCCCTGGCTTGC
66 CTGAGGGTTACGGCAGCAG-GACCAACAGCACACAG-GGAGGG-TCGGGTAGATCCCCGACTTGC
* * ** *
30396488 ACATTATCCCTCTCCGGTTGGCTCAGCGCC
128 ACATTATACCTCTCCAGCCGACTCAGCGCC
** * * **** *
30396518 CACACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCA-GTCAAAGATTGAACCG
1 CACACGCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCA
* * *** *
30396582 GACTGAGGGTTACGGTAGCAGGATCAACAGCATGTAGGGAGGGTCGGGTCGATCCCCGACTTGCA
64 GACTGAGGGTTACGGCAGCAGGACCAACAGCACACAGGGAGGGTCGGGTAGATCCCCGACTTGCA
* *
30396647 CATTCTACCTCTCCAGCCGACTGAGCGCC
129 CATTATACCTCTCCAGCCGACTCAGCGCC
** *
30396676 CGTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGC
1 CACACGC-TGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
30396732 ATACGGACTT
Statistics
Matches: 169, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.05
158 87 0.51
159 70 0.41
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
CACACGCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
CTGAGGGTTACGGCAGCAGGACCAACAGCACACAGGGAGGGTCGGGTAGATCCCCGACTTGCACA
TTATACCTCTCCAGCCGACTCAGCGCC
Found at i:30397115 original size:26 final size:26
Alignment explanation
Indices: 30397085--30397137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30397075 GTTGACTTAG
30397085 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
30397111 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
30397137 G
1 G
30397138 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:30397413 original size:159 final size:157
Alignment explanation
Indices: 30397111--30397612 Score: 573
Period size: 158 Copynumber: 3.2 Consensus size: 157
30397101 CCCAGTCTAA
* * * *
30397111 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
* * * * *
30397176 GCACGCAGGGGGGACCGGGCTGATCCTCGGCTTGCACATTCTGCCTCTTCGGTCGGCTGAGCGCC
66 GCACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGG-CCGCTGAGCGCC
* *
30397241 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *** *
30397269 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAATGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAAC-AGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * *
30397332 TAGCACATAGAGGGGGACCGGGCTGATCCCCGACTTGCGCGTTATGCCTCTTCGGCCAGCTCAGT
64 TAGCACGTAG-GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCC-GCTGAGC
* * *
30397397 GCCCGCACACTCGTTTCGTGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
30397428 GCATACAGAGTTCATTCCCAGTCTAAGAACAGACCGGATTGAAGGTTGTAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
* * *
30397493 GCATGTAGGGGGGATCGGG-TCGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
66 GCACGTAGGGGGGACCGGGCT-GATCCCCGA-CTTGCGCATTCTGCCTCTTCGGCCG-CTGAGCG
30397556 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
30397586 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
30397613 CACACGGTGT
Statistics
Matches: 285, Mismatches: 49, Indels: 20
0.81 0.14 0.06
Matches are distributed among these distances:
157 9 0.03
158 150 0.53
159 123 0.43
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
GCACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30398837 original size:26 final size:26
Alignment explanation
Indices: 30398808--30398860 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30398798 GTTGGCTTAG
*
30398808 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30398834 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30398860 G
1 G
30398861 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30399187 original size:512 final size:512
Alignment explanation
Indices: 30398391--30399375 Score: 1346
Period size: 512 Copynumber: 1.9 Consensus size: 512
30398381 TGCAACAGCG
** * *
30398391 GGATCGACAGCACGTAAGGGGGATCGGGCCAATCTTCGACTTACGCATTCTGCCTCTCCGTCGGT
1 GGATCGACAGCACGTAAGGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCGCCGGC
* * * *
30398456 TGAGATCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCT
66 TGAGATCCCGTACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACC
* * ** *
30398521 CTAGCCGGACCGAGGGCTGGGGTAGCGGGACTGGCAGCACGAAGAGGTGGATCGGGTCGATCCCC
131 CCAGCCGGACCGAGGGATGGGGTAGCGGGACCAGCAGCACGAAGAGGGGGATCGGGTCGATCCCC
* * *
30398586 GGCTTGCACATTATGCCTCTCCGATCGACTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
196 GGCTTGCACATTATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAC
** *
30398651 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGGAACCAAGGGTTGCA-CAACAAGATCAAC
261 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCAAGGGTTACATCAACAAGATCAAC
* * * * * *
30398714 AGCATGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGATTGAGCGC
325 AGCACGCAGGGGGGACCAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * * * *
30398779 CCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATATGGAG
390 CCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGGAG
30398844 TTCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGTGACAGCAGAACCCGTAGCA
455 TTCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGTGACAGCAGAACCCGTAGCA
* * * * * **
30398902 GGATCGACAGCATGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCGG
1 GGATCGACAGCACGTAAGGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCC-GCCGG
** *
30398967 CTGAGCA-CCCGTATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
65 CTGAG-ATCCCGTACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
** * * *
30399031 CCCCAGTTGGACCGAGGGATGTGGTAGCGGGACCAGCAGCACGTAGAGGGGGATTGGGTCGATCC
129 CCCCAGCCGGACCGAGGGATGGGGTAGCGGGACCAGCAGCACGAAGAGGGGGATCGGGTCGATCC
* * * * * *
30399096 CTGGCTTGCGCATTATGCCTCTTCGGTCGACTCAGCGCCTGCACGCTCGTTTCGTGGGTTAACTT
194 CCGGCTTGCACATTATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTAACTT
* * ** * * * **
30399161 ACGCATACGTAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACATTAGCAGGATTGA
259 ACGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACATCAACAAGATCAA
* * *
30399226 TAGCACGCAGGGGGGATCAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGTG
324 CAGCACGCAGGGGGGACCAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
*
30399291 CCCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGGA
389 CCCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGGA
30399356 GTTCATTCCCAGTCTAAGAT
454 GTTCATTCCCAGTCTAAGAT
30399376 TTTGAGCCAC
Statistics
Matches: 406, Mismatches: 64, Indels: 6
0.85 0.13 0.01
Matches are distributed among these distances:
511 50 0.12
512 212 0.52
513 144 0.35
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (512 bp):
GGATCGACAGCACGTAAGGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCGCCGGC
TGAGATCCCGTACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACC
CCAGCCGGACCGAGGGATGGGGTAGCGGGACCAGCAGCACGAAGAGGGGGATCGGGTCGATCCCC
GGCTTGCACATTATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAC
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACATCAACAAGATCAACA
GCACGCAGGGGGGACCAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
CGCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGGAGT
TCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGTGACAGCAGAACCCGTAGCA
Found at i:30399359 original size:26 final size:26
Alignment explanation
Indices: 30399323--30399374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30399313 TGGCTTAGGC
30399323 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
30399349 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
30399375 TTTTGAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:30400074 original size:26 final size:26
Alignment explanation
Indices: 30400045--30400097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30400035 GTTAACTTAG
*
30400045 GCATACGGAGATCATCCCTAGTCTAA
1 GCATACAGAGATCATCCCTAGTCTAA
*
30400071 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGATCATCCCTAGTCTAA
30400097 G
1 G
30400098 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATCCCTAGTCTAA
Found at i:30401449 original size:26 final size:26
Alignment explanation
Indices: 30401412--30401461 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
30401402 GTTGACTTAG
30401412 GCATACCAAGTTCATCCCCAGTCTGA
1 GCATACCAAGTTCATCCCCAGTCTGA
*
30401438 GCATA-CAGAGTTCATTCCCAGTCT
1 GCATACCA-AGTTCATCCCCAGTCT
30401462 AAGATCAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACCAAGTTCATCCCCAGTCTGA
Found at i:30403437 original size:158 final size:159
Alignment explanation
Indices: 30402966--30403454 Score: 477
Period size: 158 Copynumber: 3.1 Consensus size: 159
30402956 TGTCTAAGCA
* * * * * * * *
30402966 TACGAAGTTCATTCCTAGTCAAAGATCAGACCAGACTGAGGATTGCGGTAGTAGGATCGGCAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCA
* * * ** * *
30403031 TGC-AGGGAGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAACCGGTTGAGCGCCCG
66 CGCAAGGGAGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCG
* * *
30403095 CACGCCCATTTTGTGGGTTGGCTTAGGCA
131 CACGCTCATTTCGTGGGTTGGCTTAGGCG
* ** * * * *
30403124 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGACCGACAG
1 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAG
* * * * * * * *
30403187 CACGCAGAGGG-GAATCGGGTCGATCCCCAACTTGCGTATTATGCCTCTCCGGCCAGCTCAGCGC
64 CACGCA-AGGGAGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGC
* *
30403251 CCGCACGCTCATTTCGTGGGTTGACTTAGGTG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCG
* * * *
30403283 TACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTTGGTAGCAAGATC-ATAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCA
* *
30403347 CGCAAGGGAGGATCGGGCCGATCCTCGACTTACGCATTCTGCC-CTTCCGGTCGGCTAAGCGCCC
66 CGCAAGGGAGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTC-TCCGGCCGGCTAAGCGCCC
* * * * *
30403411 ACACGCTCGTTTCATGAGCTGGCTTAGGCG
130 GCACGCTCATTTCGTGGGTTGGCTTAGGCG
*
30403441 TATGGAGTTCATTC
1 TACGGAGTTCATTC
30403455 GATGTCTAAG
Statistics
Matches: 259, Mismatches: 64, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 7 0.03
158 135 0.52
159 110 0.42
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCA
CGCAAGGGAGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAGGCG
Found at i:30403670 original size:26 final size:26
Alignment explanation
Indices: 30403634--30403686 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30403624 GTTGGCTTAG
30403634 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30403660 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30403686 G
1 G
30403687 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30403706 original size:196 final size:195
Alignment explanation
Indices: 30403412--30403856 Score: 554
Period size: 196 Copynumber: 2.3 Consensus size: 195
30403402 TAAGCGCCCA
* * * * * *
30403412 CACGCTCGTTTCATGAGCTGGCTTAGGCGTATGGAGTTCATTCGATGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* *
30403477 ATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCT-GGACCAGTAGGAAGATCGAG-
66 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAG-TAGGACCAGTAGGAAGATC-AGC
* * * * *** * *
30403540 AGCATGCAGGGGGGATCGGGCTGGTCCCC-AGCTTACGCATTCTGTCTCTCTAACCGACTGAGCC
129 AGCACGCAGGAGGGACCGGACCAATCCCCGA-CTTACGCATTCTGCCTCTC-AACCGACTGAACC
30403604 CCCG
192 CCCG
* *
30403608 CACGCTCGCTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* * * *
30403673 ATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCAACAGTAGGACCAGTAGTAGGATCAGCAG
66 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAGTAGGACCAGTAGGAAGATCAGCAG
*** ** * *
30403738 CACGCAGGAGGGACCGGACCAATCCCCGACTTACGCATTCTGCCTCTCCGTCGGTTGAACGCCTG
131 CACGCAGGAGGGACCGGACCAATCCCCGACTTACGCATTCTGCCTCTCAACCGACTGAACCCCCG
*
30403803 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
30403857 CCCAGTCGGA
Statistics
Matches: 214, Mismatches: 32, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
195 64 0.30
196 149 0.70
197 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (195 bp):
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAGTAGGACCAGTAGGAAGATCAGCAG
CACGCAGGAGGGACCGGACCAATCCCCGACTTACGCATTCTGCCTCTCAACCGACTGAACCCCCG
Found at i:30404512 original size:157 final size:159
Alignment explanation
Indices: 30404151--30404514 Score: 384
Period size: 157 Copynumber: 2.3 Consensus size: 159
30404141 CCCGCACGTC
*
30404151 CGTTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAGCCCCAGCCGCACCGAGG
* * *
30404215 GTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGTAGATCCCCGGCTTGCGCATTATG
65 GTTCTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGGGTAGATCCCCGGCTTGCGCATTATA
** * **
30404280 CCTCTCTGGTCGGCTCAGTGCTCGAACGCT
130 CCTCTCTGACCGACTCAGCACTCGAACGCT
* * * ** * *
30404310 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAATCTAAG-ATCGGACCGCATCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCGCACCGAG
* * * * * * *
30404373 GGTTACT-GCAGTAGGATCGACGGCACGCAG-GGGGGACC-GGTTGGTCCCCGGCTTGCGCATTC
64 GGTT-CTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGGGTAGATCCCCGGCTTGCGCATTA
* *
30404435 TACCAT-TTTGACCGAC-CGAGCACTCGTACGCT
128 TACC-TCTCTGACCGACTC-AGCACTCGAACGCT
*
30404467 CGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGC
30404515 ATACGGAGTT
Statistics
Matches: 168, Mismatches: 29, Indels: 17
0.79 0.14 0.08
Matches are distributed among these distances:
156 1 0.01
157 82 0.49
158 12 0.07
159 72 0.43
160 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGCCGCACCGAGGG
TTCTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCGGGTAGATCCCCGGCTTGCGCATTATAC
CTCTCTGACCGACTCAGCACTCGAACGCT
Found at i:30405624 original size:26 final size:26
Alignment explanation
Indices: 30405587--30405639 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30405577 GTTGGCTTAG
*
30405587 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
30405613 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30405639 G
1 G
30405640 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30405921 original size:13 final size:13
Alignment explanation
Indices: 30405903--30405927 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30405893 TGCGCATTAT
30405903 GCCTCTCCGGCCG
1 GCCTCTCCGGCCG
30405916 GCCTCTCCGGCC
1 GCCTCTCCGGCC
30405928 AGTTGAGTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.56, G:0.28, T:0.16
Consensus pattern (13 bp):
GCCTCTCCGGCCG
Found at i:30406003 original size:26 final size:26
Alignment explanation
Indices: 30405967--30406019 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30405957 GTTGACTTAG
* *
30405967 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30405993 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30406019 G
1 G
30406020 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30407059 original size:26 final size:26
Alignment explanation
Indices: 30407023--30407075 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30407013 GTTGGCTTAG
*
30407023 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
30407049 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
30407075 G
1 G
30407076 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:30407196 original size:36 final size:36
Alignment explanation
Indices: 30407128--30407196 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
30407118 GTGCCGCACT
*
30407128 TTTACAAGCCATAAAAATGGCATTGGTATGGCAGAA
1 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
*
30407164 TTTACAAGCCATAAAAATGGCATTGGCGTGGCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGGCA
30407197 CGAAACTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (36 bp):
TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
Found at i:30408128 original size:26 final size:26
Alignment explanation
Indices: 30408092--30408142 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30408082 TGGCTTAGGA
30408092 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
30408118 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
30408143 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:30408865 original size:26 final size:26
Alignment explanation
Indices: 30408813--30408865 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30408803 GTTGACTTAG
* *
30408813 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
30408839 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30408865 G
1 G
30408866 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30409179 original size:26 final size:26
Alignment explanation
Indices: 30409143--30409195 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30409133 GTTGACTTAG
30409143 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30409169 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30409195 G
1 G
30409196 ATTAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30409429 original size:343 final size:330
Alignment explanation
Indices: 30408792--30409438 Score: 821
Period size: 343 Copynumber: 1.9 Consensus size: 330
30408782 GTCCGCACGC
* *
30408792 TCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATATGGAGTTCATTCC
1 TCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
30408857 CAATCTAAGATCAGACCAGACCGAGGGCTGCGACAGCACGCAGGGGGACCGGGTCGATCCTCGAC
66 CAATCTAAGATCAGACCAAACCAAGGGCTGCGACAGCACGCAGGGGGACCAGATCGATCCTCGAC
** ** * *
30408922 TTGTGCATTCTACCTCTCCGGTCGGCTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTAAGGCA
131 TTACGCATTCTACCTCTCCGACCAGCTGAGCGCCTGCACACCCGTTTCATGGGTTGGCTAAGGCA
* * *
30408987 TAGGGAGTTCATTCTATGTCTAAGCCCCAGTCGGACCGAGGATTGTGGCAGCAGGACCGACAGCA
196 TAGGAAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGATTGTGGCAGCAGGACCGACAGCA
* * * *
30409052 CGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTTTCCGGTCGGCTCAATACCCA
261 CGCAAAAGGGGACCGGACCGATCCCAGACTTGCGCATTATGCCTTTCCGGTCGGCTCAATACCCA
30409117 AACAT
326 AACAT
30409122 TCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
30409187 CAGTCTAAGATTAGACCAAACCAAGGGTTGCGATAGCAGGATCAGCAGCACGCATGGGGGATCAG
66 CAATCTAAGATCAGACCAAACCAA-GG--GC--T-GC--G---A-CAGCACGCA-GGGGGACCAG
* ** * * *
30409252 ATCGATCCTCGGCTTACGCATTCTACCTCTTTGACCAGCTGAGTGCCTGCACACCTGTTTCGTGG
118 ATCGATCCTCGACTTACGCATTCTACCTCTCCGACCAGCTGAGCGCCTGCACACCCGTTTCATGG
* * *
30409317 GTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCA-ACGAGACCGAGGGTTGTGGTAG
183 GTTGGCTAAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGACG-GACCGAGGATTGTGGCAG
* * * * *
30409381 CGGGACCGGCAGCATGCAAAAGGGGATCGGACGGATCCCTAG-CTTGCGCATTATGCCT
247 CAGGACCGACAGCACGCAAAAGGGGACCGGACCGATCCC-AGACTTGCGCATTATGCCT
30409439 CTTCGACCGG
Statistics
Matches: 266, Mismatches: 36, Indels: 17
0.83 0.11 0.05
Matches are distributed among these distances:
330 83 0.31
331 2 0.01
333 2 0.01
335 1 0.00
336 2 0.01
338 1 0.00
341 1 0.00
342 11 0.04
343 162 0.61
344 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (330 bp):
TCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
CAATCTAAGATCAGACCAAACCAAGGGCTGCGACAGCACGCAGGGGGACCAGATCGATCCTCGAC
TTACGCATTCTACCTCTCCGACCAGCTGAGCGCCTGCACACCCGTTTCATGGGTTGGCTAAGGCA
TAGGAAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGATTGTGGCAGCAGGACCGACAGCA
CGCAAAAGGGGACCGGACCGATCCCAGACTTGCGCATTATGCCTTTCCGGTCGGCTCAATACCCA
AACAT
Found at i:30411287 original size:26 final size:26
Alignment explanation
Indices: 30411257--30411309 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30411247 GTTGACTTAG
*
30411257 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
30411283 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
30411309 G
1 G
30411310 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:30412521 original size:26 final size:26
Alignment explanation
Indices: 30412491--30412543 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30412481 GTTGACTTAG
30412491 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* * *
30412517 GCATATGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
30412543 G
1 G
30412544 ATCGCACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:30412825 original size:159 final size:157
Alignment explanation
Indices: 30412618--30413179 Score: 542
Period size: 159 Copynumber: 3.5 Consensus size: 157
30412608 TTGACTTTCA
* * * * ** * *
30412618 CATTTTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGCCAGAGGG
1 CATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCATGTTTCGTGGGTTGGCTTAGGCATAGGG
30412683 AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAG
66 AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCA--CAG
*
30412748 AGGGGGACCGGGCCGATCCCCGGCTTGCG
129 AGGGGGATCGGGCCGATCCCCGGCTTGCG
* * *
30412777 CATTATGCCTCTCTGGCCGACTCAGCGCCCGCATGCATGTTTCATGGGTTGGCTTAGGCATAGGG
1 CATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCATGTTTCGTGGGTTGGCTTAGGCATAGGG
* * * * *
30412842 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGGGGCAGCGGCATAGGCAGCACACAG
66 AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGATCGACAG--CACAG
* * *
30412907 AGGGGGATCGAGCCGATCCACGGCTTACG
129 AGGGGGATCGGGCCGATCCCCGGCTTGCG
* * * * * * * * *
30412936 CATTATGCCTCTCCGACC-AGTTCAACGCCCGTATGC-TCATTTCGTGGGATGACTTAGGCATAT
1 CATTATGCCTCTCCGGCCGA-CTCAGCGCCCGCACGCAT-GTTTCGTGGGTTGGCTTAGGCATAG
* ** * * * ** *
30412999 AGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGTGGTAGTAGGATCAACAGCAC
64 GGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCAC
* * *
30413062 ATAAGAGGGGATCGGGCCGATCCCTGGCTTGCA
127 A-GAG-GGGGATCGGGCCGATCCCCGGCTTGCG
* * * * * * *
30413095 CATTCTACCTCTCTGGTCGACTGAGCACCCGCACGCTCAT-TTT-GTGGGTTGGCTTAGGCATAC
1 CATTATGCCTCTCCGGCCGACTCAGCGCCCGCACG--CATGTTTCGTGGGTTGGCTTAGGCATAG
30413158 GGAGTTCATTCCATGTCTAAGC
64 GGAGTTCATTCCATGTCTAAGC
30413180 ATACGGAGTT
Statistics
Matches: 324, Mismatches: 65, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.01
158 10 0.03
159 299 0.92
160 7 0.02
161 3 0.01
162 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
CATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCATGTTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACAGAG
GGGGATCGGGCCGATCCCCGGCTTGCG
Found at i:30413188 original size:26 final size:26
Alignment explanation
Indices: 30413152--30413204 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30413142 GTTGGCTTAG
30413152 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
30413178 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30413204 G
1 G
30413205 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30413398 original size:26 final size:26
Alignment explanation
Indices: 30413348--30413400 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30413338 GTTAGCTTAG
***
30413348 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
30413374 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
30413400 G
1 G
30413401 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.