Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 328 of 402
Found at i:30414305 original size:26 final size:26
Alignment explanation
Indices: 30414275--30414327 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30414265 GTTGACTTAG
30414275 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
30414301 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30414327 G
1 G
30414328 ATGGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30415004 original size:26 final size:26
Alignment explanation
Indices: 30414956--30415007 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30414946 TGGCTTAGGC
*
30414956 ATACAGAGTTCATTCCATGTCTAAGA
1 ATACAGAGTTCATTCCATATCTAAGA
*
30414982 ATACGGAGTTCATTCCCA-ATCTAAGA
1 ATACAGAGTTCATT-CCATATCTAAGA
30415008 TTGGACCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATATCTAAGA
Found at i:30415038 original size:185 final size:184
Alignment explanation
Indices: 30414617--30415038 Score: 580
Period size: 185 Copynumber: 2.3 Consensus size: 184
30414607 TTAGGCATAT
* * *
30414617 GGAGTTCATTCCCAATCTAAGATTAGACCGGACCAAGGGTTACGGCAGCAGGATTGAAGTACGTA
1 GGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGATTGAAGCACGTA
* * * *
30414682 GGAGGGGACCAGGTTGATCCCCGGCTTGCGTATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACG
66 GGAGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCCCTGGCCGGCTGAGCACCCGCACG
* ** *
30414747 CTTATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATAC
131 CTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGAATAC
* * * * *
30414801 GGAGCTCATTCCCAATCTAAGATCGGA-CTGCACCAAGGGTTACAGTAGCAGGATTGACAGCAC-
1 GGAGTTCATTCCCAATCTAAGATTGGACCAG-ACCAAGGGTTACGGCAGCAGGATTGA-AGCACG
* * *
30414864 TCAGG-GCGGGACCAGGTCGGTCCCCGACTTGTGCATTCTGCCTCCCTGGCCGGCTGAGCGCCCG
64 T-AGGAG-GGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCCCTGGCCGGCTGAGCACCCG
*
30414928 CACGCTCATTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGAATAC
127 CACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGAATAC
* **
30414986 GGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGA
1 GGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGA
30415039 CCAGCAGTAG
Statistics
Matches: 206, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
183 2 0.01
184 50 0.24
185 152 0.74
186 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGATTGAAGCACGTA
GGAGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCCCTGGCCGGCTGAGCACCCGCACG
CTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGAATAC
Found at i:30415917 original size:26 final size:26
Alignment explanation
Indices: 30415881--30415932 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30415871 GTTGACTTAG
30415881 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30415907 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30415933 CATCAGATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30416208 original size:159 final size:159
Alignment explanation
Indices: 30415994--30416409 Score: 416
Period size: 159 Copynumber: 2.6 Consensus size: 159
30415984 GACCGGGCCA
* * * * * *
30415994 ATCCCCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGCGCCTGCACGCCTGTTTCGTGGGTTG
1 ATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTG
* * *
30416059 GCTTAGGCATA-GAGGGTTCATTCCATGTCTAAGCCCTAG-CCAGACTGAAGGTTGTGGTAGCGG
66 GCTTAGGCATACGAGAGTTCATTCCATGTCTAAGCCC-AGACCAGACAGAAGGTTGCGGTAGCGG
* *
30416122 GATCGACAGCGA-GCAGAGGGGGATCGGGCTG
130 GATCGACAGC-ACGCA-AGGGGGATCGAGCCG
* *
30416153 ATCCCTGGCTTGGGCATTATGCCTCTCCGACTGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTG
1 ATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTG
* * ** * * *
30416218 ACCTAGGCATACG-GAGTTCATTCCCA-GTCTAAGATCAGATCGGACAGAAGGTTGCGGTAGCTG
66 GCTTAGGCATACGAGAGTTCATT-CCATGTCTAAGCCCAGACCAGACAGAAGGTTGCGGTAGCGG
* *
30416281 GATCGATAGCACGTAAGGGGGATCGAGCCG
130 GATCGACAGCACGCAAGGGGGATCGAGCCG
* ** ** * * * * ** *
30416311 GT-CCTCGATTTATGCATTTTGCCTCTCC-AATCGGTTGAACACCCGCACGCTCATTTCATGGGT
1 ATCCCT-GGCTTGCGCATTATGCCTCTCCGACT-GGCTGAGCACCCGCACGCTTGTTTCGTGGGT
30416374 TGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGC
64 TGGCTTAGGCATACGAGAGTTCATTCCATGTCTAAGC
30416410 ATATAGAGTT
Statistics
Matches: 211, Mismatches: 38, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
157 8 0.04
158 87 0.41
159 112 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
ATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTG
GCTTAGGCATACGAGAGTTCATTCCATGTCTAAGCCCAGACCAGACAGAAGGTTGCGGTAGCGGG
ATCGACAGCACGCAAGGGGGATCGAGCCG
Found at i:30416412 original size:26 final size:26
Alignment explanation
Indices: 30416382--30416434 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
30416372 GTTGGCTTAG
30416382 GCATACGA-AGTTCATT-CCATGTCTAA
1 GCATA-GAGAGTTCATTCCCA-GTCTAA
*
30416408 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
30416434 G
1 G
30416435 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:30417225 original size:26 final size:26
Alignment explanation
Indices: 30417186--30417241 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
30417176 TGGGTTGGCT
*
30417186 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
30417212 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
30417238 TAAG
1 TAAG
30417242 ATCGAATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:30417411 original size:26 final size:26
Alignment explanation
Indices: 30417381--30417433 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30417371 GTTGACTTAG
30417381 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
30417407 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30417433 G
1 G
30417434 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30417912 original size:26 final size:26
Alignment explanation
Indices: 30417882--30417934 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30417872 GTTGGCTTAG
*
30417882 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30417908 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30417934 G
1 G
30417935 ATCATATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30418191 original size:130 final size:130
Alignment explanation
Indices: 30417958--30418213 Score: 404
Period size: 130 Copynumber: 2.0 Consensus size: 130
30417948 GAGTGTTGTT
* * * * * * *
30417958 GTAGCAGGACCAGTAGCAGGATCGGCAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCACA
1 GTAGCAGGACCAGCAACAGAATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCACA
* *
30418023 TTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGTGG
66 TTCTGCCACTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGTGG
* *
30418088 GTAGCAGGACCAGCAACAGAATTGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCA
1 GTAGCAGGACCAGCAACAGAATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCACA
*
30418153 TTCTGCCACTCCGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
66 TTCTGCCACTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
30418214 AGAGTTCATT
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 114 1.00
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.19
Consensus pattern (130 bp):
GTAGCAGGACCAGCAACAGAATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCACA
TTCTGCCACTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGTGG
Found at i:30419590 original size:158 final size:157
Alignment explanation
Indices: 30419119--30419646 Score: 485
Period size: 158 Copynumber: 3.3 Consensus size: 157
30419109 AGTCTAAGTG
* * * * * *
30419119 TACGAAGTTCATT-C-TGAATCTAAGATTAGACTGGACCGAGGGTTGCGGCAGTAAGATCAATAG
1 TACGAAGTTCATTCCATG--TCTAAGATCAGAC-GGACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * * * * * * *
30419182 CACGCAGGGAGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCAGTCTGAGCACCC
63 CACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGCCC
* *
30419247 ACACACCCGTTTCATGGGTTCGCTTAGGCA
128 ACACACTCGTTTCATGGGTTGGCTTAGGCA
* * ** * * * *
30419277 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA-CTGGCAGC
1 TACGAAGTTCATTCCATGTCTAAG-ATCAGACGGACCGAGGGTTGTGGCAGCAGGATC-GACAGC
* * * * * * *
30419341 ACATAGAGGGAGATCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCC-AGCCAAC-ACAGCGC
64 ACACAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CCGACTA-AGCGC
*
30419404 CCACACACTCGTTTCATGGGTTGACTTAGGCA
126 CCACACACTCGTTTCATGGGTTGGCTTAGGCA
*
30419436 TACGAAGTTCATTCC-TAGTCTAAGATCAGAGCGGACCAAGGGTTGTGGCAGCAGGATCGACAGC
1 TACGAAGTTCATTCCAT-GTCTAAGATCAGA-CGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
* * * *
30419500 ATC-CAGGGGGGACCAGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCCGACCGGCTAACCGCCC
64 A-CACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGCCC
* * *
30419564 ACACGCTCGATTCGTGGGTTGGCTTAGGCA
128 ACACACTCGTTTCATGGGTTGGCTTAGGCA
* ** * *
30419594 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCA
1 TACGAAGTTCATTCCATGTCTAAG-ATCAGACGGACCGAGGGTTGTGGCAGCA
30419647 AGACCGGCAG
Statistics
Matches: 292, Mismatches: 63, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 158 0.54
159 129 0.44
160 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (157 bp):
TACGAAGTTCATTCCATGTCTAAGATCAGACGGACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
ACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGCCCACA
CACTCGTTTCATGGGTTGGCTTAGGCA
Found at i:30419658 original size:158 final size:158
Alignment explanation
Indices: 30419180--30419658 Score: 518
Period size: 158 Copynumber: 3.0 Consensus size: 158
30419170 TAAGATCAAT
* * * * * * * * *
30419180 AGCACGCAGGGAGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCAGTCTGAGCAC
1 AGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGC
* * * *
30419245 CCACACACCCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
66 CCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* *
30419310 GACCGAGGGTTGTGGCAGCGGGACTGGC
131 GACCGAGGGTTGTGGCAGCAGGACCGGC
* * * * * * *
30419338 AGCACATAGAGGGAGATCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCC-AGCCAAC-ACAG
1 AGCACACAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CCGACTA-AG
* * **
30419401 CGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAG-ATCA
63 CGCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCA
* * * *
30419464 GAGCGGACCAAGGGTTGTGGCAGCAGGATCGAC
127 G-CCGGACCGAGGGTTGTGGCAGCAGGACCGGC
* * * *
30419497 AGCATC-CAGGGGGGACCAGGCCGATCCTCGGCTTGCGCATTTTGCCTCTCCGACCGGCTAACCG
1 AGCA-CACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCG
* * *
30419561 CCCACACGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
65 CCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
30419626 GGACCGAGGGTTGTGGTAGCAAGACCGGC
130 GGACCGAGGGTTGTGGCAGCAGGACCGGC
30419655 AGCA
1 AGCA
30419659 GGATTGGCAG
Statistics
Matches: 257, Mismatches: 54, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
158 131 0.51
159 125 0.49
160 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (158 bp):
AGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTAAGCGC
CCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GACCGAGGGTTGTGGCAGCAGGACCGGC
Found at i:30421096 original size:26 final size:26
Alignment explanation
Indices: 30421066--30421118 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30421056 GTTAACTTAG
30421066 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30421092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30421118 G
1 G
30421119 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30421401 original size:159 final size:156
Alignment explanation
Indices: 30421167--30421625 Score: 490
Period size: 159 Copynumber: 2.9 Consensus size: 156
30421157 GCACGCAAGG
* * * *
30421167 GGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACACCCA
1 GGGACCGGGC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCA
* *
30421232 TTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCGAGGGTT
65 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGTCGAATCGAGGGTT
*
30421297 GTGGCAGCAGGATCGGCAGCACACAGAGA
129 GTGGCAGCAGGATCGACAGCACACAG-GA
* * * ** *
30421326 GGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCG-GTGCCCGAACGCTC
1 GGGACCGGG-CGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCT-GAGCACCCGCACGCTC
** * * ** * *
30421390 ATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAAGG
64 ATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG-TCGAATCGAGGG
** ** *
30421454 TTGCAGCAATAGGATCGACAGCACACAGGG
127 TTGTGGCAGCAGGATCGACAGCACACAGGA
* ** * * * * * *
30421484 GGGACCGGGCCAGTCCTTGGCTTGCACATTTTGCCTCTCCGGCCGACTGAGCACCCGCATGCTCG
1 GGGACCGGGCGA-TCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCA
* *
30421549 TTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGTCCCAGTCGAACCGAGGGTT
65 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGTCGAATCGAGGGTT
30421614 GTGGCAGCAGGA
129 GTGGCAGCAGGA
30421626 CTGGCAGTGA
Statistics
Matches: 237, Mismatches: 55, Indels: 17
0.77 0.18 0.06
Matches are distributed among these distances:
157 6 0.03
158 104 0.44
159 122 0.51
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GGGACCGGGCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCAT
TTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGAATCGAGGGTTGT
GGCAGCAGGATCGACAGCACACAGGA
Found at i:30421785 original size:25 final size:26
Alignment explanation
Indices: 30421751--30421815 Score: 96
Period size: 25 Copynumber: 2.5 Consensus size: 26
30421741 GTTGGCTTAG
30421751 GCATACGGAGTTCATCCCCAATC-AA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
30421776 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
30421802 GCATACAGAGTTCA
1 GCATACGGAGTTCA
30421816 GCCTCTCCGG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
25 21 0.60
26 14 0.40
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30422226 original size:26 final size:26
Alignment explanation
Indices: 30422197--30422305 Score: 137
Period size: 26 Copynumber: 4.0 Consensus size: 26
30422187 GTTGACTTAG
30422197 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30422223 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30422249 GCGCCCGTACGGAGTTTATCCCCAGTCTAA
1 --G--CATACGGAGTTCATCCCCAGTCTAA
* * *
30422279 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30422305 G
1 G
30422306 ATAGGATCGG
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 47 0.65
28 2 0.03
30 23 0.32
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30422290 original size:56 final size:56
Alignment explanation
Indices: 30422200--30422305 Score: 176
Period size: 56 Copynumber: 1.9 Consensus size: 56
30422190 GACTTAGGCA
*
30422200 TACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGCGCCCG
1 TACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCTAAGCGCCCG
* * *
30422256 TACGGAGTTTATCCCCAGTCTAAGCATACAGAGTTCATTCCCGGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCTAAG
30422306 ATAGGATCGG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (56 bp):
TACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCTAAGCGCCCG
Found at i:30422648 original size:26 final size:26
Alignment explanation
Indices: 30422596--30422648 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
30422586 GTAGGCTTAG
* **
30422596 GCATACGGAATTCATTCCTTGTATAA
1 GCATACAGAATTCATTCCCAGTATAA
* *
30422622 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTATAA
30422648 G
1 G
30422649 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTATAA
Found at i:30423823 original size:159 final size:159
Alignment explanation
Indices: 30423246--30423823 Score: 608
Period size: 159 Copynumber: 3.6 Consensus size: 159
30423236 ACCACCCGTT
* * * ** * *
30423246 CGATCCTCGGCTTACGCATCCTGCCTCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* * * *
30423311 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAG
* *
30423376 GATCGACAACACGTA-GGGGGGACCGAGC
131 GATCGACAACACGCAGGGGGGGATCGAGC
* * * *
30423404 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCGA-TTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGG
* * * * ** ** *
30423468 TTGGCTTAGACGTAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAG
65 TTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACTGAGGGTTACGACAG
* * * *
30423531 CGGGACCGGCAACACGCAGAGGGGGATCGAGC
128 CAGGATCGACAACACGCAGGGGGGGATCGAGC
* * * * ** * *
30423563 CGATCCCCGGCTTGTGCATTATGCCTCT-TCGACCGGCTCAACGATCGCACGCTCGTTTCATGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCT-GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
* * * * * **
30423627 TTGACTTATGCATACAGAGTTCATTCCTAATCTAAGATCAGATCGGACTGAGGGTTACAACAAAA
65 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCA
* * *
30423692 GGTTCGACAGCACGCAGGGGGGGATCGGGC
130 GGATCGACAACACGCAGGGGGGGATCGAGC
* * *
30423722 CGATCCTCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* *
30423787 TGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGAT
66 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
30423824 TTTGAGCCAT
Statistics
Matches: 331, Mismatches: 80, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 114 0.34
159 214 0.65
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAG
GATCGACAACACGCAGGGGGGGATCGAGC
Found at i:30424838 original size:159 final size:160
Alignment explanation
Indices: 30424602--30425542 Score: 493
Period size: 159 Copynumber: 5.9 Consensus size: 160
30424592 TAGCATGCAG
* * * * * ** ** *
30424602 GGGGGACCAAGCCGATCCCCGGCTTGTGCATTCTGTCTCTCCGACCGGCTGAGTGCCAGCAAAC-
1 GGGGGAACGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACC--CACACG
30424666 C-CG-TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCTCCAGCCGGATCGA
64 CTCGATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCTCCAGCCGGATCGA
* * *
30424729 GGGTTGTGGTAGTGGGACCTG-TAGCACGTAGA
129 GGGTTGTGGCAGCGGGACC-GACAGCACGTAGA
* * * ** * ** *
30424761 GGGGGATCGGGCCGGTCCTTGGCTTGCGCATTATGCCTCTCCGGTCGGCTTAGTGCCCATACGCT
1 GGGGGAACGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCACACGCT
* * * * *
30424826 C-ATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTA-GTCTAAGAT-CAGATCGGATCGA
66 CGATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CTATGTCTAAGCTCCAG-CCGGATCGA
* * * * * *
30424888 GGGTTGCGACAGCAGGATCGACAGCACGTGGGG
129 GGGTTGTGGCAGCGGGACCGACAGCACGT-AGA
* * * * * * *
30424921 GGGGGAACGAGTCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGAC-GAGCACCCGCACGCT
1 GGGGGAACGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCACACGCT
* * * *
30424985 CGA-TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
66 CGATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCTCCAGCCGGATCGAGG
* *
30425049 GTTGTGGCAGCGGGACCGACAACACGCAGA
131 GTTGTGGCAGCGGGACCGACAGCACGTAGA
* * * * * * ** **
30425079 GGGTGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGA-TCGTATTC
1 GGGGGAACGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGC-ACCCACACGC
* * * * * * * *
30425143 TCG-TTTTGTGGGTTGACTTATGCATACA-GAGTTCATTCCCA-ATCTAAGAT-CAGATCAGA-C
65 TCGATTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATT-CTATGTCTAAGCTCCAG-CCGGATC
* ** ** ** **
30425203 TGAGGGTTGCGATAGAAGGTTCGACAGCACACAGA
127 -GAGGGTTGTGGCAGCGGGACCGACAGCACGTAGA
* * * ** * * * * ** * *** * *
30425238 AGGGGACCGGGTTGATCTCCGGCTTACACATTATGCCTCCCCGACCGGCTCAATGCCCGCATGCT
1 GGGGGAACGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCACACGCT
* * ** * * * *
30425303 C-ATTTCATGGGTTGACTTAGGCATACA-GAGTTCATTCCTA-AACTAAGAT-CGGACCAGACCG
66 CGATTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATT-CTATGTCTAAGCTCCAG-CCGGATCG
* * * * * * *
30425364 AGGGTTGCGGTAGCAGGATCGACAGCAAGCAGG
128 AGGGTTGTGGCAGCGGGACCGACAGCACGTAGA
* * ** * * * * * * * *
30425397 GGGGGACCGGGTTGATCCCCAGCTTGTGCATTCTGCCTCTCTGATTGGTTGAGC-GCCATCACGC
1 GGGGGAACGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCA-CACGC
* * * *
30425461 TCG-TTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
65 TCGATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCTCCAGCCGGATCGAG
* *
30425525 GGTTGTGACAGCAGGACC
130 GGTTGTGGCAGCGGGACC
30425543 AGTACCAAGA
Statistics
Matches: 599, Mismatches: 158, Indels: 50
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.01
158 55 0.09
159 487 0.81
160 53 0.09
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
GGGGGAACGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCACACGCT
CGATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCTCCAGCCGGATCGAGG
GTTGTGGCAGCGGGACCGACAGCACGTAGA
Found at i:30425316 original size:318 final size:317
Alignment explanation
Indices: 30424529--30425340 Score: 887
Period size: 318 Copynumber: 2.6 Consensus size: 317
30424519 CCCTATCTAA
* *
30424529 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGAAGGATCGACA
** * * ** *
30424594 GCATGCAGGGGGGACCAAGCCGATCCCCGGCTTGTGCATTCTGTCTCTCCGACCGGCTGAGTGCC
66 GCACACAGGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCC
* * * * * *
30424659 AGCAAACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCTCCAGCCGG
131 CGCAAGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * * * * * ** *
30424724 ATCGAGGGTTGTGGTAGTGGGACCTGTAGCACGTAGAGGGGGATCGGGCCGGTCCTTGGCTTGCG
196 ACCGAGGGTTGTGGCAGCGGGACCTGCAACACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCG
* * *
30424789 CATTATGCCTCTCCGGTCGGCTTAGTGCCCATACGCTCATTTCATGGGTTGACTTAG
261 CATTATGCCTCTCCGGTCGGCTCAGCGACCATACGCTCATTTCATGGGTTGACTTAG
** * * *
30424846 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGAAGGATCGACA
*** * * * * **
30424911 GCACGTGGGGGGGGGAACGAGTCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGAC-GAGCA
66 GCAC--ACAGGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTG
* *
30424975 CCCGCACGCTCGA-TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
129 CCCGCAAGCTC-ATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGC
*
30425039 CGGACCGAGGGTTGTGGCAGCGGGACC-GACAACACGCAGAGGGTGACCGAGCCGATCCCCGACT
193 CGGACCGAGGGTTGTGGCAGCGGGACCTG-CAACACGCAGAGGGGGACCGAGCCGATCCCCGACT
* * * ** * ** *
30425103 TGCGCATTATGCCTCTTCGGTCGGCTCAGCGATCGTATTCTCGTTTTGTGGGTTGACTTAT
257 TGCGCATTATGCCTCTCCGGTCGGCTCAGCGACCATACGCTCATTTCATGGGTTGACTTAG
* * *
30425164 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCAGA-CTGAGGGTTGCGATAGAAGGTTCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTGCGATAGAAGGATCGAC
* * * * * * * * *
30425228 AGCACACAGAAGGGGACCGGGTTGATCTCCGGCTTACACATTATGCCTCCCCGACCGGCTCAATG
65 AGCACACAG-GGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTG
* * *
30425293 CCCGCATGCTCATTTCATGGGTTGACTTAGGCATACA-GAGTTCATTCC
129 CCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCC
30425341 TAAACTAAGA
Statistics
Matches: 403, Mismatches: 83, Indels: 17
0.80 0.17 0.03
Matches are distributed among these distances:
316 1 0.00
317 103 0.26
318 257 0.64
319 42 0.10
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGAAGGATCGACA
GCACACAGGGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCC
CGCAAGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCGGGACCTGCAACACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCG
CATTATGCCTCTCCGGTCGGCTCAGCGACCATACGCTCATTTCATGGGTTGACTTAG
Found at i:30426000 original size:159 final size:157
Alignment explanation
Indices: 30425728--30426225 Score: 526
Period size: 159 Copynumber: 3.1 Consensus size: 157
30425718 GATTGAACCA
* * *
30425728 GATCGAGGGTTGTGGCAGCAGGATCGGCAACACGCAGGGGGGATTGAGCCGATCCCCGGCTTGCG
1 GATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA-GGGGGATCGAGCCGATCCCTGGCTTGCG
* * ** * *
30425793 TATTCTGCCTCTCCGGACCGG-TTGAGCGCCCGTACGCCCATTTCTTGGGTTGGCTTAGGCATAT
65 TATTCTGCCTCTTCGGA-TGGCTT-AGCGCCCACACGCTCATTTTTTGGGTTGGCTTAGGCATA-
* *
30425857 C-GAGTTCATTCCATCTCTAAGCCCCAGTCG
127 CAGAGTTCATTCCATGTCTAAGCCCCAGACG
* * * *
30425887 GATCGAGGGTTGTGGCAGCGGGA-CTGGCAGCAAGCAGAAGGGGATCGAGTCGATCCCTGGCTTA
1 GATCGAGGGTTGTGGCAGCAGGATC-GGCAGCACGCAG--GGGGATCGAGCCGATCCCTGGCTTG
* * * *
30425951 CGTATTATGCCTCTTCGGATGGCTTAACGCCCACACGCTCATTTTTTGGGTTGACTTATGCATAC
63 CGTATTCTGCCTCTTCGGATGGCTTAGCGCCCACACGCTCATTTTTTGGGTTGGCTTAGGCATAC
**
30426016 AGAGTTCATTCTCA-GTCTAAG-ATCAGACTG
128 AGAGTTCATTC-CATGTCTAAGCCCCAGAC-G
* * * * *
30426046 GATCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGTCGGGCCGAT-CCTCGGCTTGCG
1 GATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGATCGAGCCGATCCCT-GGCTTGCG
* * * * * * * *
30426110 CATTCTGCCTCTTCGGTTGGCTGAGCGCCCACACACTCGTTTTGTGGTTTGGCTTAGGCATACGG
65 TATTCTGCCTCTTCGGATGGCTTAGCGCCCACACGCTCATTTTTTGGGTTGGCTTAGGCATACAG
30426175 AGTTCATTCCATGTCTAAGCCCC-GACCG
130 AGTTCATTCCATGTCTAAGCCCCAGA-CG
30426203 GA-CTGAGGGTTGTGGCAGCAGGA
1 GATC-GAGGGTTGTGGCAGCAGGA
30426226 CCGGTACCAG
Statistics
Matches: 280, Mismatches: 46, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
156 6 0.02
157 110 0.39
158 9 0.03
159 112 0.40
160 43 0.15
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
GATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGATCGAGCCGATCCCTGGCTTGCGT
ATTCTGCCTCTTCGGATGGCTTAGCGCCCACACGCTCATTTTTTGGGTTGGCTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAGACG
Found at i:30426868 original size:684 final size:686
Alignment explanation
Indices: 30425283--30426878 Score: 2290
Period size: 685 Copynumber: 2.3 Consensus size: 686
30425273 CCTCCCCGAC
* * * * **
30425283 CGGCTCAATGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAAACTA
1 CGGCTCAATGCCCGCACGCTCATTTTATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTA
* ** * **
30425348 AGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCAAGCAGGGGGGGACCGGGTTGAT
66 AGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCGACAGCAAGCA-GGGGGG-CCGGGCCGAT
* * * *
30425413 CC-CCAGCTTGTGCATTCTGCCTCTCTGATTGGTTGAGCG-CCATCACGCTCGTTTCGTGGTTTG
129 CCTCGA-CTTGCGCATTCTGCCTCTCCGGTTGGTTGAGCGCCCA-CACGCTCGTTTCGTGGTTTG
30425476 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGACAGCAGGA
192 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGACAGCAGGA
* * *
30425541 CCAGTACCAAGATCGACAGCATACAGAGGGGGACCAGGCTGATCTCTGGCTTGCACATTATGCCT
257 CCAGTACCAAGATCGACAGCACACAGAGGGAGACCAGACTGATCTCTGGCTTGCACATTATGCCT
* * * * *
30425606 CTCCAGCCAGCCTCTTCGATCGGTTGAGCGCCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATA
322 CTCCAGCCAGCCTCTCCGATCAGTTGAGCGCCCGCACGCTCGTTTCATGAGCTGACTTAGGCATA
* * *
30425671 CGGAGTTCATCCTCAGTCAAAGCATACAGAGTTCATTCCCAATATAAGATTGAACCAGATCGAGG
387 CAGAGTTCATCCTCAGTCAAAGCATACAGAGTTCATTCCCAATATAAGATCGAACCAGACCGAGG
*
30425736 GTTGTGGCAGCAGGATCGGCAACACGCAGGGGGGATTGAGCCGATCCCCGGCTTGCGTATTCTGC
452 GTTGTGGCAGCAGGATCGGCAACACGCAGGGGGGATTGAGCCGATCCCCGGCTTGCGCATTCTGC
* * *
30425801 CTCTCCGGACCGGTTGAGCGCCCGTACGCCCATTTCTTGGGTTGGCTTAGGCATATCGAGTTCAT
517 CTCTCCGGACCGGTTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCAT
* * *
30425866 TCCATCTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACTGGCAGCAAGCAGAAGGGGA
582 TCCATCTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGAGACTGGCAGCAAGCAGAAGGGGA
* *** *
30425931 TCGAGTCGATCCCTGGCTTACGTATTATGCCTCTTCGGAT
647 TCGAGCCGATCCCCCACTTACGTATTATGCCCCTTCGGAT
* * * * *
30425971 -GGCTTAACGCCCACACGCTCATTTTTTGGGTTGACTTATGCATACAGAGTTCATTCTCAGTCTA
1 CGGCTCAATGCCCGCACGCTCATTTTATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTA
* *
30426035 AGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGTCGGGCCGATCC
66 AGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCGACAGCAAGCAGGGGGGCCGGGCCGATCC
* * * * *
30426100 TCGGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCGCCCACACACTCGTTTTGTGGTTTGGCTT
131 TCGACTTGCGCATTCTGCCTCTCCGGTTGGTTGAGCGCCCACACGCTCGTTTCGTGGTTTGGCTT
*
30426165 AGGCATACGGAGTTCATTCCATGTCTAAGCCCC-GACCGGA-CTGAGGGTTGTGGCAGCAGGACC
196 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATC-GAGGGTTGTGACAGCAGGACC
* * * * *
30426228 GGTACCAGGATCGACAGCACGCAGAGGTAGACCAGACTGATCTCTGGCTTGCGCATTATGCCTCT
259 AGTACCAAGATCGACAGCACACAGAGGGAGACCAGACTGATCTCTGGCTTGCACATTATGCCTCT
* * *
30426293 CC-GACCAGCCTCTCCGGTCAGTTGAGCGCCTGCACGCTCGTTTCATGAGCTGACTTAGGCATAT
324 CCAG-CCAGCCTCTCCGATCAGTTGAGCGCCCGCACGCTCGTTTCATGAGCTGACTTAGGCATAC
* *
30426357 AGAGTTCATCCTCAGTCAAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGG
388 AGAGTTCATCCTCAGTCAAAGCATACAGAGTTCATTCCCAATATAAGATCGAACCAGACCGAGGG
** *
30426422 TTGTGGCAGCAGGATCGGCAACACGCAGGGGGGATTGAGCCGATCCTTGGGTTGCGCATTCTGCC
453 TTGTGGCAGCAGGATCGGCAACACGCAGGGGGGATTGAGCCGATCCCCGGCTTGCGCATTCTGCC
*
30426487 TCTCCGG-CCGGTTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATT
518 TCTCCGGACCGGTTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATT
*
30426551 CCATCTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGAGACTGGCAGCAAGCAGAGGGGGAT
583 CCATCTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGAGACTGGCAGCAAGCAGAAGGGGAT
**
30426616 CGAGCCGATCCCCCACTTGTGTATTATGCCCCTTCGG-T
648 CGAGCCGATCCCCCACTTACGTATTATGCCCCTTCGGAT
* * * * *
30426654 CGGCTCAGTGCCCGCACGTTCATTTTGTGGGTTAACTTATGTATACAGAGTTCATTCCCAGTCTA
1 CGGCTCAATGCCCGCACGCTCATTTTATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTA
* ** * * * *
30426719 AGATCAGACTGGATCGAGGGTTACGACAGCAGGATTGACAGCATGCAGGGGGGCCAGGCCCATCC
66 AGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCGACAGCAAGCAGGGGGGCCGGGCCGATCC
* * * * * *
30426784 TCGACTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGTTT
131 TCGACTTGCGCATTCTGCCTCTCCGGTTGGTTGAGCGCCCACACGCTCGTTTCGTGGTTTGGCTT
30426849 AGGCATACGGAGTTCATTCCATGTCTAAGC
196 AGGCATACGGAGTTCATTCCATGTCTAAGC
30426879 ATACGAAGTT
Statistics
Matches: 805, Mismatches: 97, Indels: 16
0.88 0.11 0.02
Matches are distributed among these distances:
683 1 0.00
684 343 0.43
685 356 0.44
686 10 0.01
687 95 0.12
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (686 bp):
CGGCTCAATGCCCGCACGCTCATTTTATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTA
AGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCGACAGCAAGCAGGGGGGCCGGGCCGATCC
TCGACTTGCGCATTCTGCCTCTCCGGTTGGTTGAGCGCCCACACGCTCGTTTCGTGGTTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGACAGCAGGACCAG
TACCAAGATCGACAGCACACAGAGGGAGACCAGACTGATCTCTGGCTTGCACATTATGCCTCTCC
AGCCAGCCTCTCCGATCAGTTGAGCGCCCGCACGCTCGTTTCATGAGCTGACTTAGGCATACAGA
GTTCATCCTCAGTCAAAGCATACAGAGTTCATTCCCAATATAAGATCGAACCAGACCGAGGGTTG
TGGCAGCAGGATCGGCAACACGCAGGGGGGATTGAGCCGATCCCCGGCTTGCGCATTCTGCCTCT
CCGGACCGGTTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCA
TCTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGAGACTGGCAGCAAGCAGAAGGGGATCGA
GCCGATCCCCCACTTACGTATTATGCCCCTTCGGAT
Found at i:30426888 original size:26 final size:26
Alignment explanation
Indices: 30426851--30426903 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30426841 GTTGGTTTAG
*
30426851 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
30426877 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30426903 G
1 G
30426904 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30428037 original size:159 final size:156
Alignment explanation
Indices: 30427587--30428089 Score: 446
Period size: 159 Copynumber: 3.2 Consensus size: 156
30427577 CCTCGTCTAA
* * * *
30427587 GCATATGGAGTTTATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATTGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC-GAGGGTTGTGGTAGCAGGATCGACA
* * * *
30427652 GCACGCGA-GGGGGACCA-GCCCGATCCCTGACTTGTGCATTCTGCCTCTCTGGCTGGTTGAGCG
65 GCACGCAAGGGGGGA-CAGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCTGGC-GGTTGAGCG
* *
30427715 CCCGCACGC-CCGTTTTGTGGGTTGGCTTAG
127 CCCGCAC-CATCGTTTCGTGGGTTGGCTTAG
* * * * * * *
30427745 GCATAGGGATTTCATT-CCATGTCTAAGCA-CCAGCTGGACCGAGGGTTGTGGTAGCGGGACCGA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAAACCGGA-CGAGGGTTGTGGTAGCAGGATCGA
* * * * * * * * * * * * *
30427808 CAGCACG-TAGAAGGCGACTGGGCCGATCCCCGGCTTACACATTATGCCTCTCCAGCCAGCTCAA
63 CAGCACGCAAG-GGGGGACAGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCT-CTGGCGGTTGAG
* *
30427872 CGCCCGCACCATCATTTCGTGGGTTGACTTAG
125 CGCCCGCACCATCGTTTCGTGGGTTGGCTTAG
* * *
30427904 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGATCGAGGGTTGTGGTAGTAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGA-CGAGGGTTGTGGTAGCAGGATCGACA
* *
30427969 GCACGCAAGGGGGGACAGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCAC
65 GCACGCAAGGGGGGACAGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCTGG-CGGTTGAGCGC
* *
30428034 CCGCA-CACTCGTTTCATGGATTGGCTTAG
128 CCGCACCA-TCGTTTCGTGGGTTGGCTTAG
*
30428063 GCAAATGGAGTTCATT-CCATGTCTAAG
1 GCATATGGAGTTCATTCCCA-GTCTAAG
30428090 CATACGGAGT
Statistics
Matches: 266, Mismatches: 63, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
157 4 0.02
158 63 0.24
159 188 0.71
160 11 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACGAGGGTTGTGGTAGCAGGATCGACAG
CACGCAAGGGGGGACAGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCTGGCGGTTGAGCGCCCG
CACCATCGTTTCGTGGGTTGGCTTAG
Found at i:30428483 original size:159 final size:159
Alignment explanation
Indices: 30428207--30429262 Score: 588
Period size: 159 Copynumber: 6.5 Consensus size: 159
30428197 TTGTGTATTC
* * * * * *
30428207 TGCCTCTCCGGCCGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTC
1 TGCCTCTCC-GACGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
* *
30428272 ATTCCATGTCTAA-ACCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CTGACAGCACGCAGAG
65 ATTCCATGTCTAAGA--CTAGACCAGACCGAGGGTTGTGGCAGCGGGATC-GACAGCACGCAGAG
* *
30428334 GGAGATTGGGCCGATCCCTAG-CTTACGCATTA
127 GGGGATCGGGCCGATCCCTAGACTTACGCATTA
* * * * *
30428366 TGCCTCTTCAGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTC
1 TGCCTC-TCCGACGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * * * *
30428431 ATTCCCA-GTCTAAGATTGGACCAGACCGAGGGTTGTAGCAGCAGGATCGACAGCATGCAG-GGG
65 ATT-CCATGTCTAAGACTAGACCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGG
* * * *
30428494 GGATCGAGCCGAT-CCTTGACTTACCCATTC
129 GGATCGGGCCGATCCCTAGACTTACGCATTA
* ** * * * * *
30428524 TGCCTCTCCGACTGGCTGAGTACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTA
1 TGCCTCTCCGAC-GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * * * *
30428589 ATTGCATGTCTAAGCCCTAG-CCATACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGG
65 ATTCCATGTCTAAG-ACTAGACCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGG
* * * * *
30428653 GGACCAGGTCGATCCC-CGACTTGCGCATTA
129 GGATCGGGCCGATCCCTAGACTTACGCATTA
* *
30428683 TGCCTCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTT
1 TGCCTCTCCGA-CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * * * * * * * *
30428748 ATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAG-TCTAAGATTGGACTGGACCGAGGGTTGCG
65 AT-TCCATGTCTAAG---AC-TAG---A---CCAGACCGAGGGTT-G--TGG-CAGCGGGAT-CG
* * ** * * *
30428811 ACAGTAGGATCGACAGCACGTAGGGGGGACCAGGCCGA-CCCCCGGCTTGCGCATTC
114 AC---A-G--C-AC-GCA-G-A-GGGGGATCGGGCCGATCCCTAGACTTACGCATTA
* ** ** * * * * *
30428867 TGTCTCTCCGACCGGCAGAAAGCCCGCACG-TCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTT
1 TGCCTCTCCGA-CGGCTCAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGAAGTT
* * * ** * * ** *
30428931 CATTCCATGTCTAAGCCCCA-TCTGGACCGAGGGTTGTGGCAACAGGA-CTGGTAGCACGCAAAG
64 CATTCCATGTCTAAG-ACTAGACCAGACCGAGGGTTGTGGCAGCGGGATC-GACAGCACGCAGAG
* * *
30428994 GGGGATTGGGCCGATCTCC--GGCTTGCGCATTA
127 GGGGATCGGGCCGATC-CCTAGACTTACGCATTA
* * * * * *
30429026 TGCCTCTCCGGCCGGCTCAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGTATATGGAGTTC
1 TGCCTCTCC-GACGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * ** *
30429091 ATTCCCA-GTCTAAGA-TCAGACCAGACCGAGAGTTGTGGTAGCAAGATCGACAGCACACAG-GG
65 ATT-CCATGTCTAAGACT-AGACCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGG
* * * * *
30429153 GGGACCGGGCTGATCCCAAG-CTTGCGCATTC
128 GGGATCGGGCCGATCCCTAGACTTACGCATTA
* * * * * * * * *
30429184 TGCCTTTCCGACCAGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGACTTT
1 TGCCTCTCCGA-CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
30429249 ATTCCATGTCTAAG
65 ATTCCATGTCTAAG
30429263 CATACGGAGT
Statistics
Matches: 684, Mismatches: 157, Indels: 113
0.72 0.16 0.12
Matches are distributed among these distances:
157 16 0.02
158 201 0.29
159 293 0.43
160 20 0.03
161 3 0.00
162 5 0.01
163 2 0.00
164 1 0.00
166 1 0.00
167 1 0.00
168 5 0.01
169 5 0.01
170 1 0.00
171 6 0.01
172 9 0.01
173 3 0.00
174 3 0.00
175 5 0.01
176 1 0.00
177 1 0.00
179 1 0.00
180 2 0.00
181 3 0.00
182 2 0.00
183 8 0.01
184 86 0.13
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
TGCCTCTCCGACGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
TTCCATGTCTAAGACTAGACCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGG
ATCGGGCCGATCCCTAGACTTACGCATTA
Found at i:30428682 original size:317 final size:317
Alignment explanation
Indices: 30428149--30429261 Score: 863
Period size: 317 Copynumber: 3.4 Consensus size: 317
30428139 GTAGCAGGAC
* * * ****
30428149 TAGCAGCAGGATCGATAGCACGCAGGGGGGATCGAACTGATCCCCGGCTTGTGTATTCTGCCTCT
1 TAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAACCGATCCCCGACTTACCCATTCTGCCTCT
* * * * *
30428214 CCGGCCGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
66 CCGACCGGCTGAGTACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCCAT
* ***
30428279 GTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGAGATTGGG
131 GTCTAAACCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGAGACCAGG
* * *
30428344 CCGATCCCTAGCTTACGCATTATGCCTCTTCAG-TCGGCTCAGCGCCCGCACGCTCGTTTTGTGG
196 CCGATCCCGAGCTTACGCATTATGCCTC-TCAGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGG
* * *
30428408 GTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG
260 GTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATTGGACCAGACCGAGGGTTG
* * **
30428466 TAGCAGCAGGATCGACAGCATGCAGGGGGGATCGAGCCGATCCTTGACTTACCCATTCTGCCTCT
1 TAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAACCGATCCCCGACTTACCCATTCTGCCTCT
* * * * *
30428531 CCGACTGGCTGAGTACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTGCAT
66 CCGACCGGCTGAGTACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCCAT
* * * * * *
30428596 GTCTAAGCCCTAGCCATACCGAGGGTTGTGGCAGCGGGA-TCGGCAGCACGTAGAGGGGGACCAG
131 GTCTAAACCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACT-GACAGCACGCAGAGGGAGACCAG
* * * *
30428660 GTCGATCCCCGA-CTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTCGTG
195 GCCGAT-CCCGAGCTTACGCATTATGCCTCTCAGACCGGCTCAGCGCCCGCACGCTCGTTTCGTG
* * * *
30428724 GGTTGACTTAGGCATACGAAGTTTATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
259 GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG-AT--TG-G---A---CCAGAC--CGA
**
30428789 TTGGACTG
312 --GGGTTG
* * * * * * * *
30428797 GACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGGA-CCAGGCCGACCCCCGGCTTGC
1 TAGC-A-------G-C---AGGATCGACAGCACGCAGGGGGGATCGA-ACCGATCCCCGACTTAC
* * * * * * ** *
30428861 GCATTCTGTCTCTCCGACCGGCAGA-AAGCCCGCACGTCCATTTTGTGGGTTGGCTTAGGCATAG
53 CCATTCTGCCTCTCCGACCGGCTGAGTA-CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAC
* * * * ** * * **
30428925 GGAGTTCATTCCATGTCTAAGCCCCATCTGGACCGAGGGTTGTGGCAACAGGACTGGTAGCACGC
117 GAAGTTAATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGC
* * *** * * * *
30428990 AAAGGGGGATTGGGCCGATCTCCG-GCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCTCGCA
182 AGAGGGAGACCAGGCCGATC-CCGAGCTTACGCATTATGCCTCTCAGACCGGCTCAGCGCCCGCA
* * * * * **
30429054 CGCTCGTTTCATGGGTTGACTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
246 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATTGGACCAGACCG
*
30429119 AGAGTTG
311 AGGGTTG
* * * * * ** * * * * *
30429126 TGGTAGCAAGATCGACAGCACACAGGGGGGACCGGGCTGAT-CCCAAGCTTGCGCATTCTGCCTT
1 TAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAACCGATCCCCGA-CTTACCCATTCTGCCTC
* ** * * * * * * *
30429190 TCCGACCAGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGACTTTATTCCA
65 TCCGACCGGCTGAGTACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCCA
30429255 TGTCTAA
130 TGTCTAA
30429262 GCATACGGAG
Statistics
Matches: 634, Mismatches: 125, Indels: 74
0.76 0.15 0.09
Matches are distributed among these distances:
316 7 0.01
317 341 0.54
318 7 0.01
320 2 0.00
321 2 0.00
324 1 0.00
327 5 0.01
328 1 0.00
329 5 0.01
331 8 0.01
332 1 0.00
333 5 0.01
336 1 0.00
339 2 0.00
340 1 0.00
342 6 0.01
343 238 0.38
344 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
TAGCAGCAGGATCGACAGCACGCAGGGGGGATCGAACCGATCCCCGACTTACCCATTCTGCCTCT
CCGACCGGCTGAGTACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCCAT
GTCTAAACCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGAGACCAGG
CCGATCCCGAGCTTACGCATTATGCCTCTCAGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATTGGACCAGACCGAGGGTTG
Found at i:30428764 original size:26 final size:26
Alignment explanation
Indices: 30428735--30428787 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30428725 GTTGACTTAG
*
30428735 GCATAC-GAAGTTTATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
30428761 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30428787 G
1 G
30428788 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30428945 original size:184 final size:185
Alignment explanation
Indices: 30428613--30428946 Score: 431
Period size: 184 Copynumber: 1.8 Consensus size: 185
30428603 CCCTAGCCAT
* * * * * *
30428613 ACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGGGGACCAGGTCGATCCCCGACTTGCG
1 ACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCAGGCCGACCCCCGACTTGCG
* ** * *
30428678 CATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
66 CATTATGCCTCTCCGACCGGCACAAAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA
*
30428743 AGTTTATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGG
131 AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGG
* *
30428798 ACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAG-GGGGGACCAGGCCGACCCCCGGCTTGCG
1 ACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCAGGCCGACCCCCGACTTGCG
* * * * * *
30428862 CATTCTGTCTCTCCGACCGGCAGAAAGCCCGCACG-TCCATTTTGTGGGTTGGCTTAGGCATAGG
66 CATTATGCCTCTCCGACCGGCACAAAGCCCGCACGCT-CATTTCGTGGGTTGACTTAGGCATACG
* *
30428926 GAGTTCAT-TCCATGTCTAAGC
130 AAGTTCATCCCCA-GTCTAAGC
30428947 CCCATCTGGA
Statistics
Matches: 125, Mismatches: 22, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
183 4 0.03
184 90 0.72
185 31 0.25
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (185 bp):
ACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCAGGCCGACCCCCGACTTGCG
CATTATGCCTCTCCGACCGGCACAAAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA
AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGG
Found at i:30429057 original size:343 final size:343
Alignment explanation
Indices: 30428418--30429104 Score: 880
Period size: 343 Copynumber: 2.0 Consensus size: 343
30428408 GTTGACTTAT
* *
30428418 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTAGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGGAGCAGCAGGATCGACA
* * * ** * * *
30428483 GCATGCAGGGGGGATCGAGCCGATCCTTGACTTACCCATTCTGCCTCTCCGACTGGCTGAGTACC
66 GCACGCAGGGGGGACCGAGCCGACCCCCGACTTACCCATTCTGCCTCTCCGACCGGCAGAGAACC
* * * *
30428548 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTGCATGTCTAAGCCCTAGCCAT
131 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCAG
* * * * *
30428613 ACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGGGGACCAGGTCGATCCCCGACTTGCG
196 ACCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAAAGGGGGACCAGGCCGATCCCCGACTTGCG
*
30428678 CATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
261 CATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA
*
30428743 AGTTTATCCCCAGTCTAA
326 AGTTCATCCCCAGTCTAA
** *
30428761 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGA-CAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG-GAGCAGCAGGATCGAC
* * * * *
30428825 AGCACGTAGGGGGGACC-AGGCCGACCCCCGGCTTGCGCATTCTGTCTCTCCGACCGGCAGA-AA
65 AGCACGCAGGGGGGACCGA-GCCGACCCCCGACTTACCCATTCTGCCTCTCCGACCGGCAGAGAA
* * * *
30428888 GCCCGCACGTCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATC
129 -CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGC
** * *** * *
30428953 TGGACCGAGGGTTGTGGCAACAGGA-CTGGTAGCACGCAAAGGGGGATTGGGCCGATCTCCGGCT
193 CAGACCGAGGGTTGTGGCAACAGGATC-GGCAGCACGCAAAGGGGGACCAGGCCGATCCCCGACT
* *
30429017 TGCGCATTATGCCTCTCCGGCCGGCTCAGCG-CTCGCACGCTCGTTTCATGGGTTGACTTAGGTA
257 TGCGCATTATGCCTCTCCGACCGGCTCAGCGCCT-GCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
30429081 TATGGAGTTCATTCCCAGTCTAA
321 TACGAAGTTCATCCCCAGTCTAA
30429104 G
1 G
30429105 ATCAGACCAG
Statistics
Matches: 293, Mismatches: 46, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
342 5 0.02
343 287 0.98
344 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGGAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGACCCCCGACTTACCCATTCTGCCTCTCCGACCGGCAGAGAACC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAAAGGGGGACCAGGCCGATCCCCGACTTGCG
CATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA
AGTTCATCCCCAGTCTAA
Found at i:30429265 original size:26 final size:26
Alignment explanation
Indices: 30429236--30429288 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30429226 GTTGGCTTAG
*
30429236 GCATACGGACTTTATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
*
30429262 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
30429288 G
1 G
30429289 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:30429965 original size:26 final size:26
Alignment explanation
Indices: 30429916--30429968 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30429906 GTTGACTTAG
* *
30429916 GCATACGGAGTTCATCCCTCATCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
30429942 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
30429968 G
1 G
30429969 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:30430133 original size:26 final size:26
Alignment explanation
Indices: 30430097--30430152 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
30430087 TGGGTTGGCT
30430097 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
30430123 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
30430149 TAAG
1 TAAG
30430153 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:30430496 original size:26 final size:26
Alignment explanation
Indices: 30430467--30430519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30430457 GTGGACTTAG
30430467 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
30430493 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30430519 G
1 G
30430520 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30430821 original size:159 final size:158
Alignment explanation
Indices: 30430545--30431312 Score: 527
Period size: 159 Copynumber: 4.8 Consensus size: 158
30430535 GGTTTGTGAC
* * * * ** * * *
30430545 AGCAGGATCGACAGTAC-CTAG-GGGGGACCAGGCCGATCCCTGGCTTGTGCATTCTGGCTCTCC
1 AGCAGGACCGACAGCACGC-AGAGGGGGACCAGGTCGATCCC-CGCTTACGCATTATGCCTCTAC
* * * * * * * * *
30430608 GATCGGCTGAGCACCCGCACGCCTGTTTCATGGGTTGGCTTAGGGATA-GTGAGTTCATTCCATG
64 GACCGGCTCAGCGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCATG
* *
30430672 TCTAAGCCCCAGCTAGACTGAGGGTTGTGGT
128 TCTAAGCCCCAGCCAGACTGAGGGTTGCGGT
* * * *
30430703 AGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCG
1 AGCAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCC-GCTTACGCATTATGCCTCTACG
* * *
30430768 ACCGGCTCAGTGCCCGTGA-GCTTGTTTCGTTGGTTGACTTATGCATACGGAGTTCATTCCCA-G
65 ACCGGCTCAGCGCCCGT-ATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATG
** * ** **
30430831 TCTAAGATCGAATC-GAACTGAGGGTTGCAAT
128 TCTAAGCCCCAGCCAG-ACTGAGGGTTGCGGT
* * * * *
30430862 AGCAGGATCGACAGCACGTAG-GGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTC-ACT
1 AGCAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCC-CGCTTACGCATTATGCCTCTAC-
* * * * * * * *
30430925 GGCTGGCTGAGCGCCCGTATGCCTGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTGCATGT
64 GACCGGCTCAGCGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
* * *
30430990 CTAAGCCCTAGCCAGA-TCGAGGGTTGTGGC
129 CTAAGCCCCAGCCAGACT-GAGGGTTGCGGT
** * * * ** * * *
30431020 AGTGGGACTGGCAGCATGCAGAAAGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCC
1 AGCAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCG-CTTACGCATTATGCCTCTACG
* ** * *
30431085 ACCGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATTCC-TAGT
65 ACCGGCTCAGCGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GT
** *
30431149 CTAAG-ATCAGACCAGACCGAGGGTTGCGGT
129 CTAAGCCCCAG-CCAGACTGAGGGTTGCGGT
* * ** * * * * * * *
30431179 AGCAAGATCGACAGCACGCAGA-GGGGACTGGGCCGATCCTCGACTTGCACTTTCTGCCTCTCCG
1 AGCAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCG-CTTACGCATTATGCCTCTACG
* * * * ** * *
30431243 ACCAGCTAAGCGCCCGCACGCCCGTTTCTTGGGTT-AGCTTAGGCATACGGAGTTCTTTCCATGT
65 ACCGGCTCAGCGCCCGTATGCTTGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGT
30431307 CTAAGC
129 CTAAGC
30431313 ATACAGAATT
Statistics
Matches: 469, Mismatches: 119, Indels: 43
0.74 0.19 0.07
Matches are distributed among these distances:
157 6 0.01
158 224 0.48
159 233 0.50
160 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGCAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCGCTTACGCATTATGCCTCTACGA
CCGGCTCAGCGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCAGCCAGACTGAGGGTTGCGGT
Found at i:30430961 original size:158 final size:156
Alignment explanation
Indices: 30430493--30431311 Score: 449
Period size: 158 Copynumber: 5.2 Consensus size: 156
30430483 CCCAGTCTAA
* * * * * *
30430493 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGTTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGTGATAGCAGGATCGACA
* * * * * *
30430558 GTACCTAGGGGGGACCAGGCCGATCCCTGGCTTGTGCATTCTGGCTCTCC--GATCGGCTGAGCA
66 GCACGTAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCT-GC-CTCCTGGCT-GGCTGAGCG
* *
30430621 CCCGCACGCCTGTTTCATGGGTTGGCTTAG
128 CCCGTA-GCCTGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
30430651 GGATA-GTGAGTTCATT-CCATGTCTAAG-CCCCAGCTAGACTGAGGGTTGTGGTAGCGGGACCG
1 GCATACG-GAGTTCATTCCCA-GTCTAAGATCGAACCGA-ACTGAGGGTTGTGATAGCAGGATCG
* * * ** * * * * * *
30430713 ACAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCGACCGGCTCAG
63 ACAGCACGTAG-GGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCCT-GGCTGGCTGAG
* * * * *
30430778 TGCCCGTGAGCTTGTTTCGTTGGTTGACTTAT
126 CGCCCGT-AGCCTGTTTCGTGGGTTGGCTTAG
* **
30430810 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACTGAGGGTTGCAATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGTGATAGCAGGATCGACA
30430875 GCACGTAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCACTGGCTGGCTGAGCGCC
66 GCACGTAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTC-CTGGCTGGCTGAGCGCC
*
30430940 CGTATGCCTGTTTCGTGGGTTGGCATAG
130 CGTA-GCCTGTTTCGTGGGTTGGCTTAG
* * ** * * * ** **
30430968 GCATAGGGAGTTCATT-GCATGTCTAAGCCCTAGCCAGATC-GAGGGTTGTGGCAGTGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACC-GAACTGAGGGTTGTGATAGCAGGATC-G
* * * ** * * * * * *** * *
30431030 GCAGCATGCAGAAAGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCCACCGGCTCAG
63 ACAGCACGTAG-GGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTC-CTGGCTGGCTGAG
* * * *
30431095 CGCCCGCATG-CTCATTTCATGGGTTGACTTAG
126 CGCCCGTA-GCCT-GTTTCGTGGGTTGGCTTAG
* * * * * *
30431127 GCACACGGAGTTCATTCCTAGTCTAAGATC-AGACC-AGACCGAGGGTTGCGGTAGCAAGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACTGAGGGTTGTGATAGCAGGATCGA
* * ** * * * * * * ** *
30431190 CAGCACGCAGAGGGGACTGGGCCGAT-CCTCGACTTGCACTTTCTGCCTCTCCGACCAGCTAAGC
64 CAGCACGTAGGGGGGACCAGGTCGATCCCT-GGCTTGCGCATTCTGCCTC-CTGGCTGGCTGAGC
* * * *
30431254 GCCCGCACGCCCGTTTCTTGGGTTAGCTTAG
127 GCCCGTA-GCCTGTTTCGTGGGTTGGCTTAG
*
30431285 GCATACGGAGTTC-TTTCCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
30431312 CATACAGAAT
Statistics
Matches: 499, Mismatches: 136, Indels: 52
0.73 0.20 0.08
Matches are distributed among these distances:
157 20 0.04
158 247 0.49
159 221 0.44
160 11 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGTGATAGCAGGATCGACA
GCACGTAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCCTGGCTGGCTGAGCGCCC
GTAGCCTGTTTCGTGGGTTGGCTTAG
Found at i:30431070 original size:317 final size:315
Alignment explanation
Indices: 30430493--30431312 Score: 921
Period size: 317 Copynumber: 2.6 Consensus size: 315
30430483 CCCAGTCTAA
* * * * *
30430493 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGTTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATC-GAACGAACCGAGGGTTGCGATAGCAGGATCGACA
* * * * * * *
30430558 GTACCTAGGGGGGACCAGGCCGATCCCTGGCTTGTGCATTCTGGCTCTCCGATCGGCTGAGCACC
65 GCACGTAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCGGCT-GGCTGAGCGCC
* * *
30430623 CGCACGCCTGTTTCATGGGTTGGCTTAGGGATAGTGAGTTCATTCCATGTCTAAGCCCCAGCTAG
129 CGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* ** * * *
30430688 ACTGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTACG
194 ACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAAGGGACCAGGCCGATCCCCAGCTTACG
* * * * ** * * *
30430753 CATTATGCCTCTTCGACCGGCTCAGTGCCCGTGA-GCTTGTTTCGTTGGTTGACTTAT
259 CATTATGCCTCTCCCACCGGCTCAGCGCCCG-CATGCTCATTTCATGGGTTGACTTAG
* * *
30430810 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACTGAGGGTTGCAATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGAA-CGAACCGAGGGTTGCGATAGCAGGATCGACA
* *
30430875 GCACGTAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCACTGGCTGGCTGAGCGCC
65 GCACGTAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTC-GGCTGGCTGAGCGCC
* * * * * *
30430940 CGTATGCCTGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCAG
129 CGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * *
30431005 A-TCGAGGGTTGTGGCAGTGGGACTGGCAGCATGCAGAAAGGGACCAGGCCGATCCCC-GACTTA
194 ACT-GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAAGGGACCAGGCCGATCCCCAG-CTTA
30431068 CGCATTATGCCTCTCCCACCGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAG
257 CGCATTATGCCTCTCCCACCGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAG
* * * *
30431127 GCACACGGAGTTCATTCCTAGTCTAAGATC-AGACCAGACCGAGGGTTGCGGTAGCAAGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGA-ACGA-ACCGAGGGTTGCGATAGCAGGATCGAC
* * ** * * * * ** *
30431191 AGCACGCAGAGGGGACTGGGCCGAT-CCTCGACTTGCACTTTCTGCCTCTCCGACCAGCTAAGCG
64 AGCACGTAGGGGGGACCAGGCCGATCCCT-GGCTTGCGCATTCTGCCTCT-CGGCTGGCTGAGCG
* * * * *
30431255 CCCGCACGCCCGTTTCTTGGGTTAGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGC
127 CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
30431313 ATACAGAATT
Statistics
Matches: 420, Mismatches: 74, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
316 11 0.03
317 406 0.97
318 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGAACGAACCGAGGGTTGCGATAGCAGGATCGACAG
CACGTAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCGGCTGGCTGAGCGCCCG
CACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
TGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAAGGGACCAGGCCGATCCCCAGCTTACGCA
TTATGCCTCTCCCACCGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAG
Found at i:30431962 original size:159 final size:158
Alignment explanation
Indices: 30431554--30431997 Score: 466
Period size: 158 Copynumber: 2.8 Consensus size: 158
30431544 GCAGCGGGAT
* * * *
30431554 CGACAGCACGCAGAGGGGGATCGGGCTGATCTTCGGCTTGCGCATTATGCCTTTCCAGCCGGCTG
1 CGACAGCACGCAGAGGGGGATCGGTC-GATCTCCGACTTGCGCATTATGCCTCTCCAGCCGGCTG
* * * *
30431619 AGTGCCCGCATGCTCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCA
65 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCA
* *
30431684 GATCGGACCGAGGTTTGCAGCAGTAGGAT
130 GATCGGACCGAGGGTTGCAGCAGTAGGAC
* * * * * *
30431713 CGACAGTACACAG-GGGGGATCGGGTCGATC-CCCAGCTTACGCATTCTGCCTCTCCAACCGGCT
1 CGACAGCACGCAGAGGGGGATC-GGTCGATCTCCGA-CTTGCGCATTATGCCTCTCCAGCCGGCT
* * * * * * *
30431776 GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-GCATGTCTAAGCC
64 GAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAC
** *
30431840 CTAG-TCGGACCGAGGGTTGTGGCAG-CGGCAC
128 C-AGATCGGACCGAGGGTTGCAGCAGTAGG-AC
** * * * *
30431871 CGGTAGCACGCAGAGGGGGACCAGGTCGATCTCCGACTTGCGCATTATGCCTCTCCGGCTGGCTC
1 CGACAGCACGCAGAGGGGGATC-GGTCGATCTCCGACTTGCGCATTATGCCTCTCCAGCCGGCTG
* * * *
30431936 AGTGCCTGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCGGTCTAAGA
65 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
30431998 ACACAGAGTT
Statistics
Matches: 227, Mismatches: 50, Indels: 16
0.77 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 115 0.51
159 103 0.45
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGACAGCACGCAGAGGGGGATCGGTCGATCTCCGACTTGCGCATTATGCCTCTCCAGCCGGCTGA
GTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAG
ATCGGACCGAGGGTTGCAGCAGTAGGAC
Found at i:30432295 original size:341 final size:343
Alignment explanation
Indices: 30431661--30432338 Score: 906
Period size: 341 Copynumber: 2.0 Consensus size: 343
30431651 ATGCATACGA
* *
30431661 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGTTTGCAGCAGTAGGATCGACAGTACACAG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGTAGGATCGACAGCACACAG
* * * *
30431726 GGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCACGCC
66 GGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAACCGACAGAGCGCCCGCACGCC
* * *
30431791 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGTCGGACCGAGGG
131 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
* * *
30431856 TTGTGGCAGCGGCACCGGTAGCACGCAGAGGGGGACCAGGTCGATCTCCGACTTGCGCATTATGC
196 TTGTGGCAGCGGCACCGGCAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCAATATGC
* * *
30431921 CTCTCCGGCTGGCTCAGTGCCTGCACACTCATTTCGTGGGTTGACTTAGG-CATACGGAGTTCAT
261 CTCTCCGGCTGGCTCAGCGCCCGCACACTCATTTCGGGGGTTGACTTAGGTC-TACGGAGTTCAT
*
30431985 CCCCGGTCTAAGAACACAG
325 CCCCAGTCTAAGAACACAG
**
30432004 AGTTCATT-CCAGTCTAAGATCAGA-CTGGACCGAGGGTTGC-GACAGTAGGATCGACAGCACGT
1 AGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCAG-CAGTAGGATCGACAGCACAC
* * ** * * *
30432066 AGGGTGGACCGGGCCGA-CCCTCGGCTTACGCATTCTGCC-CTCCGGCCGACAGAGTGGCCTCAC
64 AGGGGGGACCGGGCCGATCCC-CAGCTTACGCATTCTGCCTCTCCAACCGACAGAGCGCCCGCAC
*
30432129 GCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCG
128 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCG
* *** *
30432193 AGGGTTGTGGTAGCAGG-ACCGGCAGCACGCAGAGGGGGATTGGGTCGATCCCCGGCTTGCGCAA
192 AGGGTTGTGGCAGC-GGCACCGGCAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCAA
* * * *
30432257 TATGCCTCTCCGG-TCGGCTCAGCGCCCGTACGCTCATTTTGGGGGTTGACTTAGGTCTATGGAG
256 TATGCCTCTCCGGCT-GGCTCAGCGCCCGCACACTCATTTCGGGGGTTGACTTAGGTCTACGGAG
*
30432321 TTCATTCCCAGTCTAAGA
320 TTCATCCCCAGTCTAAGA
30432339 TCAGACCAGA
Statistics
Matches: 292, Mismatches: 36, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
340 2 0.01
341 202 0.69
342 80 0.27
343 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (343 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGTAGGATCGACAGCACACAG
GGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAACCGACAGAGCGCCCGCACGCC
CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
TTGTGGCAGCGGCACCGGCAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCAATATGC
CTCTCCGGCTGGCTCAGCGCCCGCACACTCATTTCGGGGGTTGACTTAGGTCTACGGAGTTCATC
CCCAGTCTAAGAACACAG
Found at i:30433161 original size:26 final size:26
Alignment explanation
Indices: 30433125--30433177 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30433115 GTTGACTTAG
* *
30433125 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
30433151 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
30433177 G
1 G
30433178 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:30433341 original size:26 final size:25
Alignment explanation
Indices: 30433305--30433359 Score: 101
Period size: 26 Copynumber: 2.2 Consensus size: 25
30433295 TGGGTTGGCT
30433305 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCA-GTC
30433331 TAAGCATACGGAGTTCATTCCAGTC
1 TAAGCATACGGAGTTCATTCCAGTC
30433356 TAAG
1 TAAG
30433360 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 7 0.24
26 22 0.76
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
TAAGCATACGGAGTTCATTCCAGTC
Found at i:30433717 original size:26 final size:26
Alignment explanation
Indices: 30433687--30433739 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30433677 GTGGACTTAG
30433687 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30433713 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30433739 G
1 G
30433740 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30434041 original size:159 final size:159
Alignment explanation
Indices: 30433713--30434529 Score: 637
Period size: 159 Copynumber: 5.2 Consensus size: 159
30433703 CCCAGTCTAA
**** * * * * * *
30433713 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGATCAGACTGAGGTTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGAC
* * * * ** * * * *
30433777 AGTACGTAG-GAGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTC-TCTGGTCGGTTGAGC
65 AGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTTC-GATCGGCTCAGC
* * * * * *
30433840 ACCCGCACGCCCATTTTGCGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
30433871 GCATAGGGAGTTCATTCCGTGTCTAAGCCCA-AGCTAGACTGAGGGTTGTGGTAGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAGA-CCAGACCGAGGGTTGCGGCAGCAGGACCGAC
* * * * *
30433935 AGCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCGATCGGCTCAACG
65 AGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCG
* * * *
30434000 CCCGTGA-GCTCATTTCGTTGGTTGACTTAT
130 CCCG-CACGCTCGTTTCGTGGGTTGACTTAG
** * ** *
30434030 GCATACGGAGTTCATTCCCA-GTCTAAGGTCAGA-CGGAACCGAGGGTTGCAACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAG-ACCGAGGGTTGCGGCAGCAGGACCGA
* * *
30434093 CAGCACGC--A-GGGGACCAGGTCGATCCCC-GACTTGCGCATTTTGCCTCTTCG-GCTGGCTGA
64 CAGCACGCAGAGGGGGACCAGGTCGATCCCCAG-CTTGCGCATTATGCCTCTTCGATC-GGCTCA
* * * *
30434153 GCGCCCGCACGCCCGTTTCATGGGTTGGCATAG
127 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * **
30434186 GCATAGGGAGTTCATTGCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAACGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCGAGGGTTGCGGCAGCAGGACCGAC
*
30434250 AGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTGTCTC-ATCGGCTCAGC
65 AGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCT-TCGATCGGCTCAGC
*
30434314 GCCCGGACGCTCG-TTCGTGGGTTGACTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * **
30434344 GCACACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATTGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGAC
* * ** * * * * * * *
30434408 AGCACACA-ACGGGGACTGGGTCGATCCCCGGCTTGCACATTCTGCCTC-TCTGACCGACTGAGT
65 AGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTTC-GATCGGCTCAGC
*
30434471 GCCCGCACGCTCGTTTCTTGGGTT-AGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGA-CTTAG
30434502 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
30434530 ATACAGAATT
Statistics
Matches: 518, Mismatches: 114, Indels: 54
0.76 0.17 0.08
Matches are distributed among these distances:
155 7 0.01
156 112 0.22
157 63 0.12
158 160 0.31
159 166 0.32
160 10 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGACA
GCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:30434292 original size:315 final size:314
Alignment explanation
Indices: 30433713--30434529 Score: 962
Period size: 315 Copynumber: 2.6 Consensus size: 314
30433703 CCCAGTCTAA
** * *
30433713 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATC-AGACTGAGGTTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CGA-ACTGAGGGTTGCGACAGCAGGATCGAC
* * * * * * *
30433777 AGTACGTAGGAGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGG-TCGGTTGAGCA
64 AGCACGCACG-GGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCT-GGCTGAGCG
* *** * *
30433841 CCCGCACGCCCATTTTGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCAAGCT
127 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCC
* * * * * *
30433906 AGACTGAGGGTTGTGGTAGCAGGACCGACAGCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTA
192 AGACCGAGGGTTGTGGCAACAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTA
* * *
30433971 CGCATTATGCCTCT-TCGATCGGCTCAACGCCCGTGA-GCTCATTTCGTTGGTTGACTTAT
257 CGCATTATGCCTCTCTC-ATCGGCTCAACGCCCG-GACGCTC-GTTCGTGGGTTGACTTAG
* * * *
30434030 GCATACGGAGTTCATTCCCAGTCTAAGGTCAGACGGAACCGAGGGTTGCAACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGAC-GAACTGAGGGTTGCGACAGCAGGATCGACA
* *
30434095 GCACGCA-GGGGACCAGGTCGATCCCCGACTTGCGCATTTTGCCTCT-TCGGCTGGCTGAGCGCC
65 GCACGCACGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGCTGGCTGAGCGCC
* * * *
30434158 CGCACGCCCGTTTCATGGGTTGGCATAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCGG
129 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAG
* ** *
30434223 ACCGAGGGTTGTGGCAACGGGACCGGTAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCG
194 ACCGAGGGTTGTGGCAACAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTACG
* *
30434288 CATTATGCCTGTCTCATCGGCTCAGCGCCCGGACGCTCGTTCGTGGGTTGACTTAG
259 CATTATGCCTCTCTCATCGGCTCAACGCCCGGACGCTCGTTCGTGGGTTGACTTAG
* * ** *
30434344 GCACACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACGA-ACTGAGGGTTGCGACAGCAGGATCGACA
* ** * * * * *
30434409 GCACACAACGGGGACTGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGACCGACTGAGTGCC
65 GCACGC-ACGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCC
* * * *
30434474 CGCACGCTCGTTTCTTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
30434530 ATACAGAATT
Statistics
Matches: 424, Mismatches: 66, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
313 1 0.00
314 77 0.18
315 186 0.44
316 100 0.24
317 59 0.14
318 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACGAACTGAGGGTTGCGACAGCAGGATCGACAG
CACGCACGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCG
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGAC
CGAGGGTTGTGGCAACAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTACGCA
TTATGCCTCTCTCATCGGCTCAACGCCCGGACGCTCGTTCGTGGGTTGACTTAG
Found at i:30434541 original size:26 final size:25
Alignment explanation
Indices: 30434502--30434553 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
30434492 GTTAGCTTAG
* *
30434502 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAATTCATTCCA-GTCTAA
30434528 GCATACAGAATTCATTCCAGTCTAA
1 GCATACAGAATTCATTCCAGTCTAA
30434553 G
1 G
30434554 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAATTCATTCCAGTCTAA
Found at i:30434849 original size:172 final size:167
Alignment explanation
Indices: 30434590--30435368 Score: 566
Period size: 159 Copynumber: 4.8 Consensus size: 167
30434580 GCAGGACCAG
* * * * * * *
30434590 CAGCAGGATTGGCAGCATGCAGGGGGGACCAGGCTGATCCCCGACTTGTGCGTTCTACCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCG
* * *
30434655 GCCTG-TTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 G-CTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
* * *
30434719 CTAAGCCCCAGCCAGACTGTGGGTTGTGGCAGCAGGACC
130 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGA-C
* * * * * *
30434758 GGCAGCAGGATCGACAGCACGCAGAGGAGGACCAGGGCTGATCCTCGGCTTGCGTATTATGCCTC
1 --CAGCAGGATCGACAGCACGCAG-GGGGGACCA-GGCCGATCCCCGACTTGCGCATTATACCTC
* * * *
30434823 TCCAGCTGACTGAGTGCCCGCACGCTCGTTTCTTAGGTTGACTTATGCATACGGAGTTCATTCCC
62 TCCGGCTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC
** * * *
30434888 A-GTCTAAGATCGAACCGGACCGAAGG-T-T-GCAGC---A-
126 ATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC
* * * ** *
30434922 -A-CAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCG
* * * *
30434985 GCT-AGCTGAGCGCCCGCACG-TGCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATG
66 GCTGA-CTGAGTGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATG
* *
30435048 TCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAAGAC
129 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC
*
30435087 CAGCA-G--C-AC-GCA-G-A-GGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCG
* * * * * * *
30435144 G-TCGGCTCAATGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-A
66 GCT-GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATG
** * *
30435207 TCTAAG-ATCAGACCAGACCAAGGG-T-T----GCA-G--
129 TCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGAC
* * * * * * * * *
30435237 CAGCAGGATCGATAGCACGCAGGGGAGGA-CTGGTCCAATTCCCAACTTACGCAATCTGCCTCTC
1 CAGCAGGATCGACAGCACGCAGGGG-GGACCAGG-CCGATCCCCGACTTGCGCATTATACCTCTC
* * ** ** *
30435301 TGACCAACTGAGCACCCGCACGCTCGTTTCTTGGGTT-AGCTTAGGCATACGGAGTTCATTCCAT
64 CGGCTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCAT
30435365 GTCT
128 GTCT
30435369 GGACATACGA
Statistics
Matches: 482, Mismatches: 93, Indels: 79
0.74 0.14 0.12
Matches are distributed among these distances:
150 5 0.01
151 1 0.00
152 1 0.00
153 4 0.01
154 1 0.00
155 3 0.01
156 1 0.00
157 6 0.01
158 108 0.22
159 179 0.37
160 23 0.05
161 7 0.01
162 3 0.01
163 2 0.00
164 2 0.00
166 3 0.01
167 2 0.00
169 5 0.01
170 20 0.04
171 12 0.02
172 91 0.19
173 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (167 bp):
CAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCG
GCTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC
Found at i:30435741 original size:26 final size:26
Alignment explanation
Indices: 30435711--30435763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30435701 GTTGACTTAG
*
30435711 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30435737 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30435763 G
1 G
30435764 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30436070 original size:159 final size:159
Alignment explanation
Indices: 30435885--30436240 Score: 383
Period size: 159 Copynumber: 2.2 Consensus size: 159
30435875 CGTTTCATTT
* * * ** *
30435885 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAATCGGACTGAGGGTTGTGGCAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTGCAGCAGC
* * ** *
30435950 AGGACCGACAACATGTAGAGGGGGACCCG-GCCGATCCCCAGCTTGCGCATTATGCCTCTTCGAT
66 AGGACCGACAACACGCAGAGGGGGA-CCGAGCCGATCCCCAGCTTGCGCATTATAACTCTCCGAT
* *
30436014 CAGCTCAACGCCTGCACGCTTGTTTAATGG
130 CAGCTCAACGCCCGCACGCTCGTTTAATGG
* * * ** * *
30436044 GTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCAGTAG
1 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCGGACCGAGGGTTGCAGCAG
* * * * * ** * * *
30436108 CAGGATCGATAGCACGCAGGGGGGGACCGAGCTGATCCCTGGCTTGTGCATTCTAACTCTCCGGT
65 CAGGACCGACAACACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATAACTCTCCGAT
* **
30436173 CAGCTGAACGCCCGCACGCTCGTTTCGTGG
130 CAGCTCAACGCCCGCACGCTCGTTTAATGG
30436203 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
30436241 ATACGGAGTT
Statistics
Matches: 157, Mismatches: 37, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
158 6 0.04
159 148 0.94
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTGCAGCAGC
AGGACCGACAACACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATAACTCTCCGATC
AGCTCAACGCCCGCACGCTCGTTTAATGG
Found at i:30436249 original size:26 final size:26
Alignment explanation
Indices: 30436213--30436263 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30436203 GTTGGCTTAG
30436213 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
30436239 GCATACGGAGTTCATTCTCAGTCTA
1 GCATACGGAGTTCATTCTCAGTCTA
30436264 TGATTTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:30441322 original size:26 final size:26
Alignment explanation
Indices: 30441292--30441344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30441282 GTTGACTTAG
30441292 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
30441318 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
30441344 G
1 G
30441345 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:30441654 original size:155 final size:157
Alignment explanation
Indices: 30441318--30441816 Score: 401
Period size: 155 Copynumber: 3.2 Consensus size: 157
30441308 CCCAGTCTAA
** * * ** * *
30441318 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATC-GAACCGAGGGTTACAGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAG-ACCGAGGGTTACGGCACCAGGACCGA
* * * * * * *
30441381 CAACATGCA-AGGGGGATCTGA-CCGATCCC-GACTTGCACATTCTACCTCTCCGACCGACCGAG
64 CAACACGTAGAGGGGGATC-GAGCCGATCCCTGACTTGCGCATTCTAGCTCTTCGGCCGA--TAG
* * * * * *
30441443 TGCTCGTACGCCCGTTTCGTGGAGTAG-CTTAG
126 CGCCCGCACGCTCGTTTCATGG-GTTGACTTAG
* * * * ** * * *
30441475 CCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCGAGGGTTACGGCACCAGGACCGAC
* * *
30441539 AGCACGTAGAGGGGGATCGAGCTGATCCCTGACTTGCGCATTCT-GCCTCTTCGGCTC-A-A-TG
65 AACACGTAGAGGGGGATCGAGCCGATCCCTGACTTGCGCATTCTAG-CTCTTCGGC-CGATAGCG
* *
30441600 CCCGTACGCTCGTTTCATGGGTTGACTTAT
128 CCCGCACGCTCGTTTCATGGGTTGACTTAG
** **
30441630 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTACGGCACCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCGAGGGTTACGGCACCAGGACCGAC
* * *
30441694 AACACGTAGCGGGGGATCGAGCCGATCCTTGGCTTGCGCATTCTAGCTCTTCGGCCGACTTAGCG
65 AACACGTAGAGGGGGATCGAGCCGATCCCTGACTTGCGCATTCTAGCTCTTCGGCCGA--TAGCG
* * *
30441759 CCCGCACGTTCGTTTCATGGGTTGGCTTGG
128 CCCGCACGCTCGTTTCATGGGTTGACTTAG
30441789 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
30441817 ATACGGAGTT
Statistics
Matches: 274, Mismatches: 50, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
154 6 0.02
155 116 0.42
156 8 0.03
157 50 0.18
158 23 0.08
159 70 0.26
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCGAGGGTTACGGCACCAGGACCGACA
ACACGTAGAGGGGGATCGAGCCGATCCCTGACTTGCGCATTCTAGCTCTTCGGCCGATAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAG
Found at i:30441819 original size:26 final size:26
Alignment explanation
Indices: 30441789--30441841 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30441779 GTTGGCTTGG
30441789 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30441815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30441841 G
1 G
30441842 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30442800 original size:26 final size:26
Alignment explanation
Indices: 30442764--30442816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30442754 GTTGACTTAG
30442764 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30442790 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30442816 G
1 G
30442817 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30443148 original size:159 final size:155
Alignment explanation
Indices: 30442790--30443152 Score: 365
Period size: 159 Copynumber: 2.3 Consensus size: 155
30442780 CCCAGTCTAA
* * * *
30442790 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGATCGAGGGTTGTGACAATAGGATCGATA
1 GCATACGGAGTTCATTCCT-GTCTAAGATCGGACCAGATCGAGGGTTGTGACAACAGGACCGACA
* * * * * *
30442855 GCACGTAGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTACCTCTCCAGCAGGCTGAGCGCCCG
65 GCACGAAGGGGGACCGGGCCGATCCCGGCCTACGCATTATACCTCTCCAGCAGGCTCAACGCCCG
*
30442920 TACGTCCGTTTCATGGGTTGGCTTAG
130 TACGTCCGTTTCATGGGTTGACTTAG
* * * * ** * * *
30442946 GCATAGGGAGTCCATTGCATGTCTAAG-CCCCAGCCGGATCGAGGGTTGTGGCAGCAGGACC-AG
1 GCATACGGAGTTCATT-CCTGTCTAAGATCGGA-CCAGATCGAGGGTTGTGACAACAGGACCGA-
* * * *
30443009 CAGCACGCAAAGGGGGATCGGGCTGATCCCTGGCCTACGCATTATGCCTCTCCGATC-GGCTCAA
63 CAGCACG--AAGGGGGACCGGGCCGATCCC-GGCCTACGCATTATACCTCTCC-AGCAGGCTCAA
*
30443073 CGCCTGTACG-CTCGTTTCATGGGTTGACTTAG
124 CGCCCGTACGTC-CGTTTCATGGGTTGACTTAG
* *
30443105 GCATACAGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTTG
1 GCATACGGAGTTCATT-CCTGTCTAAGATCGGACCAGATCGAGGGTTG
30443153 CAGCAGCAAG
Statistics
Matches: 163, Mismatches: 35, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
155 2 0.01
156 50 0.31
157 2 0.01
158 19 0.12
159 86 0.53
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCTGTCTAAGATCGGACCAGATCGAGGGTTGTGACAACAGGACCGACAG
CACGAAGGGGGACCGGGCCGATCCCGGCCTACGCATTATACCTCTCCAGCAGGCTCAACGCCCGT
ACGTCCGTTTCATGGGTTGACTTAG
Found at i:30443299 original size:26 final size:26
Alignment explanation
Indices: 30443263--30443314 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30443253 GTTGGCTTTG
30443263 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
30443289 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
30443315 TATCAGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:30443659 original size:26 final size:26
Alignment explanation
Indices: 30443629--30443681 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30443619 GTTGACTTAG
*
30443629 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
30443655 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30443681 G
1 G
30443682 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30444642 original size:26 final size:26
Alignment explanation
Indices: 30444594--30444646 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30444584 CTTGACTTAG
* *
30444594 GCATACGGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
30444620 GCATACAGAGTTCAT-TCCCAGTCTAA
1 GCATACAGAGTTCATCT-CCAGTCTAA
30444646 G
1 G
30444647 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTCTAA
Found at i:30445124 original size:26 final size:26
Alignment explanation
Indices: 30445094--30445146 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30445084 GTTGGCTTAG
30445094 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
30445120 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30445146 G
1 G
30445147 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30445511 original size:26 final size:26
Alignment explanation
Indices: 30445475--30445527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30445465 GTTGACTTAG
30445475 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
30445501 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30445527 G
1 G
30445528 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30447489 original size:26 final size:26
Alignment explanation
Indices: 30447452--30447502 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30447442 CTCAAAATCA
30447452 TAGACTGAGAATGAACACCGTATGCT
1 TAGACTGAGAATGAACACCGTATGCT
*
30447478 TAGACATG-GAATGAACTCCGTATGC
1 TAGAC-TGAGAATGAACACCGTATGC
30447503 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTGAGAATGAACACCGTATGCT
Found at i:30448001 original size:26 final size:26
Alignment explanation
Indices: 30447950--30448002 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30447940 CCGGTCCAAT
**
30447950 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
30447976 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
30448002 C
1 C
30448003 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30449222 original size:25 final size:26
Alignment explanation
Indices: 30449194--30449245 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30449184 CTGGTCCAAT
* *
30449194 CTTAGAC-TGGAATGAATTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30449219 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30449245 C
1 C
30449246 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30449573 original size:159 final size:158
Alignment explanation
Indices: 30449218--30449981 Score: 598
Period size: 159 Copynumber: 4.8 Consensus size: 158
30449208 AATTCTGTAT
* * * * *
30449218 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTAAGAAACGAACGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
30449283 TCGGTCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCC
66 CCGGTGAGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTGCGTGCTATCGATCC
* **
30449348 TGCTACTGCAACCCTCAGTCTGGTCTGA
131 CGCTACCACAACCCTCAGTCTGGTCTGA
* * * * * * *
30449376 TCTTAGA-TTAGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
30449440 ACCGGTGAGACAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTTTGCGTACTACCGGT
65 GCCGGTGAGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCC-TTGCGTGCTATCGAT
* * *
30449505 CCCGCTGCCACAACCCTCGGTCTGG-CTAGG
129 CCCGCTACCACAACCCTCAGTCTGGTCT-GA
* * * * *
30449535 GCTTAGACATGCAATGAACTCCCTATGCCTATGCCAACCCATGAAAC-AGGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* ** * * * * *
30449599 GCTAGCCG-GAGAGGCAAAATGTGCAAGTCGGGGATCGACCTGGTCTGCCC-TGCGTGCTGTCGA
65 GC-CGGTGAGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTC-CCCCTTGCGTGCTATCGA
* **** *
30449662 TCCTGCTGTTGCAACCCTCGGT-TCGGTCTGA
128 TCCCGCTACCACAACCCTCAGTCT-GGTCTGA
* * * * * * * * * * *
30449693 CCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCAACGAAATGA-CCTCACGAGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-GCGGGCGCTC
* * * * * *
30449756 AGCCGGTCGA-AGAGGCATAATGCGTAAGCTGGGGATCGACCCGATCCCCTTCTGCGTGCTGTCG
64 AGCCGGT-GAGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCT-TGCGTGCTATCG
* * *
30449820 GTCCCGCTACCACAACCCTCAGTCTAG-CTGGG
127 ATCCCGCTACCACAACCCTCAGTCTGGTCT-GA
* * *
30449852 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*** * * * *
30449917 CCGACCAGAGAGGCCA-AATGCGCAAGCCAGGGATCGGCCTGGTCCCTCC-TACGTACTATCGAT
66 CCGGTGAGAGAGG-CATAATGCGCAAGCCGGGGATCGACCTGGTCCC-CCTTGCGTGCTATCGAT
30449980 CC
129 CC
30449982 TGCTGTCGCA
Statistics
Matches: 458, Mismatches: 125, Indels: 46
0.73 0.20 0.07
Matches are distributed among these distances:
157 7 0.02
158 214 0.47
159 225 0.49
160 12 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTGAGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTGCGTGCTATCGATCC
CGCTACCACAACCCTCAGTCTGGTCTGA
Found at i:30449731 original size:158 final size:156
Alignment explanation
Indices: 30449219--30450037 Score: 526
Period size: 158 Copynumber: 5.2 Consensus size: 156
30449209 ATTCTGTATG
* * * * *
30449219 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CTAACCTAAGAAACGAACGTGCGGGCGCTCAA
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAAAGAGCGTACGGGCGCTCAA
* * * **
30449283 TCGGTC-AGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATC
64 -CAGCCGAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGT-CCCCCTGCGTGCTATCGATC
* * *
30449347 CTGCTACTGCAACCCTCAGTCTGGTCTGAT
127 CTGCTGCTGCAACCCTCGGTCTGGTCTGAC
* * * *
30449377 CTTAGATTAGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAAC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGGCGCTCAAC
* ** * * * * * * *
30449442 CGGTGAGACAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTTTGCGTACTACCGGTCC
65 AGCCGAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTCCCCC--TGCGTGCTATCGATCC
* ** **
30449507 CGCTGCCACAACCCTCGGTCTGG-CTAGGG
128 TGCTGCTGCAACCCTCGGTCTGGTCT-GAC
* * * * * * * *
30449536 CTTAGACATGCAATGAACTCCCTATGCCTATGCCAACCCATGAAACAG-GTGTGCGGGCGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-AGAGCGTACGGGCGCTCAA
* * *
30449600 CTAGCCG-GAGAGGCAAAATGTGCAAGTCGGGGATCGACCTGGTCTGCCCTGCGTGCTGTCGATC
64 C-AGCCGAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTC-CCCCTGCGTGCTATCGATC
*
30449664 CTGCTGTTGCAACCCTCGGT-TCGGTCTGAC
127 CTGCTGCTGCAACCCTCGGTCT-GGTCTGAC
* * * * * * * *
30449694 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCAACGAAATGA-CCTCACGAGCGTTGAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGT-ACGGGCGCTCA-
* * * * * * * * * * *
30449758 CCGGTCGA-AGAGGCATAATGCGTAAGCTGGGGATCGACCCGATCCCCTTCTGCGTGCTGTCGGT
63 ACAGCCGAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTCCCC--CTGCGTGCTATCGAT
* * ** * * **
30449822 CCCGCTACCACAACCCTCAGTCTAG-CTGGGG
126 CCTGCTGCTGCAACCCTCGGTCTGGTCT-GAC
* * * * * * *
30449853 CTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGGCGCTCAAC
* * * * * * *
30449918 CGACC-AGAGAGGCCAAATGCGCAAGCCAGGGATCGGCCTGGTCCCTCCTACGTACTATCGATCC
65 AG-CCGAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTCCC-CCTGCGTGCTATCGATCC
* * * ** *
30449982 TGCTG-TCGCAAACCTCGGTCCGATCCAAT
128 TGCTGCT-GCAACCCTCGGTCTGGTCTGAC
30450011 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
30450038 TTAGACTGGG
Statistics
Matches: 495, Mismatches: 137, Indels: 58
0.72 0.20 0.08
Matches are distributed among these distances:
157 14 0.03
158 244 0.49
159 226 0.46
160 11 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGGCGCTCAACA
GCCGAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTCCCCCTGCGTGCTATCGATCCTGC
TGCTGCAACCCTCGGTCTGGTCTGAC
Found at i:30449793 original size:317 final size:316
Alignment explanation
Indices: 30449218--30450037 Score: 952
Period size: 317 Copynumber: 2.6 Consensus size: 316
30449208 AATTCTGTAT
* * * *
30449218 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTAAGAAACGAACGTGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * * **
30449282 ATCGGTCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATC
66 CT-AGCCAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGT-CCCCCTGCGTGCTATCGATC
** * * * * *
30449347 CTGCTACTGCAACCCTCAG-TCTGGTCTGATCTTAGATTAGGAATGAACTCCGTGTGCCTAAGTC
129 CTGCTGTTGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
* * *
30449411 AACCCACGAAATGAGCGTACGGGCGCTGAACCGGTGAGACAGGCATAATGCGCAAGCCGGGGATC
193 AACCAACGAAATGAGCCTACGAGCGCTGAACCGGTGAGACAGGCATAATGCGCAAGCCGGGGATC
* * * * * *
30449476 GGCCTGGTCCCCCTT-TGCGTACTACCGGTCCCGCTGCCACAACCCTCGGTCTGGCTAGG
258 GACCCGAT-CCCCTTCTGCGTACTACCGGTCCCGCTACCACAACCCTCAGTCTAGCTAGG
* * * *
30449535 GCTTAGACATGCAATGAACTCCCTATGCCTATGCCAACCCATGAAAC-AGGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGA-GCGTGCGGGCGCTCA
* * * *
30449599 GCTAGCCGGAGAGGCAAAATGTGCAAGTCGGGGATCGACCTGGTCTGCCCTGCGTGCTGTCGATC
65 GCTAGCCAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTC-CCCCTGCGTGCTATCGATC
* *
30449664 CTGCTGTTGCAACCCTCGGTTCGGTCTGACCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
129 CTGCTGTTGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * *
30449729 ACCAACGAAATGA-CCTCACGAGCGTTGAGCCGGTCGA-AGAGGCATAATGCGTAAGCTGGGGAT
194 ACCAACGAAATGAGCCT-ACGAGCGCTGAACCGGT-GAGACAGGCATAATGCGCAAGCCGGGGAT
* ** *
30449792 CGACCCGATCCCCTTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCTAGCTGGG
257 CGACCCGATCCCCTTCTGCGTACTACCGGTCCCGCTACCACAACCCTCAGTCTAGCTAGG
* * *
30449852 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
30449917 C-CGACCAGAGAGGCCAAATGCGCAAGCCAGGGATCGGCCTGGTCCCTCCTACGTACTATCGATC
66 CTAG-CCAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTCCC-CCTGCGTGCTATCGATC
* * * * **
30449981 CTGCTGTCGCAAACCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
129 CTGCTGTTGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
30450038 TTAGACTGGG
Statistics
Matches: 423, Mismatches: 70, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
316 12 0.03
317 405 0.96
318 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
CTAGCCAGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTCCCCCTGCGTGCTATCGATCCT
GCTGTTGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CAACGAAATGAGCCTACGAGCGCTGAACCGGTGAGACAGGCATAATGCGCAAGCCGGGGATCGAC
CCGATCCCCTTCTGCGTACTACCGGTCCCGCTACCACAACCCTCAGTCTAGCTAGG
Found at i:30450040 original size:26 final size:26
Alignment explanation
Indices: 30450011--30450063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30450001 CCGATCCAAT
*
30450011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30450037 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30450063 C
1 C
30450064 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30450428 original size:26 final size:26
Alignment explanation
Indices: 30450390--30450445 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
30450380 CCGGTCTGAT
*
30450390 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30450416 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30450442 CTTA
1 CTTA
30450446 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30451600 original size:159 final size:158
Alignment explanation
Indices: 30451253--30451747 Score: 469
Period size: 158 Copynumber: 3.1 Consensus size: 158
30451243 GGCTCAAAAT
* *
30451253 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
*** * * * ** *
30451318 CGGTCAGAGAGGCAGAATGCGAAAGCTGGGGATCAGCTCGGTCCCCCTTGCGTGCTGTCGATCTT
66 CAACCAGAGAGGCAGAATGCCAAAGCCGGGGATCAGCCCAATCCCCCTTGCGTGCTGTCGATCCT
* ** *
30451383 GCTGCCACAACTCTCGGTCTGGTCTGAT
131 GCTGCCACAACCCTCGGTCCAGTCTGAG
* * * *
30451411 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * *
30451476 CAACCGGAGAGGCATATTGCCCAAGCCGGGGATC-GACCCAATGCCCCTTTGCGTGCTGTCGGTC
66 CAACCAGAGAGGCAGAATGCCAAAGCCGGGGATCAG-CCCAAT-CCCCCTTGCGTGCTGTCGATC
*
30451540 CTGCTGCCACAACCCTCGGTCCAG-CTGGGG
129 CTGCTGCCACAACCCTCGGTCCAGTCT-GAG
* ** * * * * *
30451570 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTGCGGCCGCTCTG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
*** * * ** * * *
30451634 CCGGTCGGAGAGGCAGAATGCTC-AAGCCGAGGG-TCGGCCCGGTCCCCCCTACGTGCTGCCGAT
65 CCAACCAGAGAGGCAGAATGC-CAAAGCCG-GGGATCAGCCCAATCCCCCTTGCGTGCTGTCGAT
* * * *
30451697 CCTACTGTCGCAACCCTCGGTCCAGTCTGAT
128 CCTGCTGCCACAACCCTCGGTCCAGTCTGAG
30451728 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
30451748 TGTGTTCTTA
Statistics
Matches: 275, Mismatches: 53, Indels: 18
0.79 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 145 0.53
159 122 0.44
160 6 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CAACCAGAGAGGCAGAATGCCAAAGCCGGGGATCAGCCCAATCCCCCTTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCAGTCTGAG
Found at i:30452440 original size:26 final size:26
Alignment explanation
Indices: 30452403--30452454 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
30452393 TGGTCCAATA
* * *
30452403 TTAGACTGGGAATGAATTTCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
30452429 TTAGACAT-GGAAAGAACTCCGTATGC
1 TTAGAC-TGGGAAAGAACTCCGTATGC
30452455 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTATGC
Found at i:30452782 original size:159 final size:157
Alignment explanation
Indices: 30452427--30453245 Score: 621
Period size: 159 Copynumber: 5.2 Consensus size: 157
30452417 AATTTCGTAT
* * *
30452427 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
30452492 CTGGTCGAAGAGGTAGAATGTGCAAGTCGAGGATCAGCCCAGTCCCCTCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATCC
* * * *
30452557 TGCTACCGCAACCCTCGGTCTGGTCCGA
131 CGCTACCACAACCCTCAGTCTGG-CTGA
* * * * *
30452585 TCTTAGAC-TAGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
30452649 GCCGGTGGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCTTCTGCGTGCTGCCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCC-TCTGCGTGCTGTCGAT
* * *
30452714 CCCGCTGCCACAACCCTCAATCTGGCTAGG
129 CCCGCTACCACAACCCTCAGTCTGGCT-GA
* * * * * * *
30452744 GCTTAGACATGCAATGAACTCCCTATGCCTATGCCAACCCATGAAAC-AGGCATACGGGCTCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * * * * * * *
30452808 ACCAGCCAGAGAGGCAGAATACGCAAGTCGGGGATTGACCTAGTCCCCCCTGCGTGCTGTCGATA
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATC
* ***** * * *
30452873 CTGCTGTTGTAACCCTCGGTTCAGTCTGA
130 CCGCTACCACAACCCTCAG-TCTGGCTGA
* * * * * * * * *
30452902 TCTTAGAC-TGGGAATGAACTTCGTATGCATGAGTCAACCAACGAAATGAGC-TCACGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-GCGGGCGCTC
* * * * * * *
30452965 AGCCGGTTGAAGAGGCATAATGCGTAAG-CTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCG
64 AGCCGGTCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCTGGT-CCCCTCTGCGTGCTGTCG
* * * *
30453029 ATCTCGCTACCACAACCCTTAGTCTAGCTGGG
127 ATCCCGCTACCACAACCCTCAGTCTGGCT-GA
* * * *
30453061 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * * *
30453125 ACCGATCGGAGAGGCAGAATGCGCAAGCCAGGGG-TCGGCCTGGTCCCCCCAG-GTACTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGAT
* ** * * * * *
30453188 CCTGCTGTCGCAAACCTCTGTCCGGTTTGA
129 CCCGCTACCACAACCCTCAGTCTGG-CTGA
*
30453218 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
30453246 TTAGACTGGG
Statistics
Matches: 501, Mismatches: 142, Indels: 37
0.74 0.21 0.05
Matches are distributed among these distances:
156 1 0.00
157 53 0.11
158 207 0.41
159 232 0.46
160 8 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATCC
CGCTACCACAACCCTCAGTCTGGCTGA
Found at i:30453002 original size:317 final size:315
Alignment explanation
Indices: 30452427--30453245 Score: 941
Period size: 317 Copynumber: 2.6 Consensus size: 315
30452417 AATTTCGTAT
* * * * * *
30452427 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCTCTCAA
* * * * * * *
30452492 CTGGTCGAAGAGGTAGAATGTGCAAGTCGAGGA-TCAGCCCAGTCCCCTCTGCGTGCTGTCGATC
66 C-CGTCG-AGAGGCAGAATGCGCAAGTCGGGGATTGA-CCTAGTCCCCCCTGCGTGCTGTCGATC
** * * * *
30452556 CTGCTACCGCAACCCTCGG-TCTGGTCCGATCTTAGACTAGGAATGAACTCCGTGTGCCTAAGTC
128 CTGCTGTCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
* * *
30452620 AACCCACGAAACGAGCGTGCGGGCACTGAGCCGGTGGGAGAGGCATAATGCGCAAGTCGGGGATC
192 AACCAACGAAACGAGCGTACGGGCACTGAGCCGGTGGAAGAGGCATAATGCGCAAGTCGGGGATC
* * * * * *
30452685 GGCCTGGTCCCCTTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCAATCTGGCTAGG
257 GACCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAATCTAGCTAGG
* * * *
30452744 GCTTAGACATGCAATGAACTCCCTATGCCTATGCCAACCCATGAAACAGGCATACGGGCTCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCTCTCAA
* * *
30452809 CCAGCCAGAGAGGCAGAATACGCAAGTCGGGGATTGACCTAGTCCCCCCTGCGTGCTGTCGATAC
66 CC-GTC-GAGAGGCAGAATGCGCAAGTCGGGGATTGACCTAGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
30452874 TGCTGTTGTAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATGAGTCAA
129 TGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * * *
30452939 CCAACGAAATGAGC-TCACGGGCGCTGAGCCGGTTGAAGAGGCATAATGCGTAAG-CTGGGGATC
194 CCAACGAAACGAGCGT-ACGGGCACTGAGCCGGTGGAAGAGGCATAATGCGCAAGTC-GGGGATC
* * * * *
30453002 GACCCGATCCCCCTCTGCGTGCTGTCGATCTCGCTACCACAACCCTTAGTCTAGCTGGG
257 GACCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAATCTAGCTAGG
*
30453061 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACAGGCGTGCGGG-TGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCT-CTCA
* * * * * *
30453125 ACCGATCGGAGAGGCAGAATGCGCAAGCCAGGGG-TCGGCCTGGTCCCCCCAG-GTACTGTCGAT
65 ACCG-TC-GAGAGGCAGAATGCGCAAGTC-GGGGATTGACCTAGTCCCCCCTGCGTGCTGTCGAT
* * * *
30453188 CCTGCTGTCGCAAACCTCTGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
127 CCTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
30453246 TTAGACTGGG
Statistics
Matches: 421, Mismatches: 72, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
316 63 0.15
317 349 0.83
318 9 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCTCTCAA
CCGTCGAGAGGCAGAATGCGCAAGTCGGGGATTGACCTAGTCCCCCCTGCGTGCTGTCGATCCTG
CTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
AACGAAACGAGCGTACGGGCACTGAGCCGGTGGAAGAGGCATAATGCGCAAGTCGGGGATCGACC
CGATCCCCCTCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAATCTAGCTAGG
Found at i:30453248 original size:26 final size:26
Alignment explanation
Indices: 30453219--30453271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30453209 CCGGTTTGAT
30453219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30453245 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30453271 C
1 C
30453272 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30453807 original size:26 final size:26
Alignment explanation
Indices: 30453771--30453823 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30453761 CCGATCCGAT
* *
30453771 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30453797 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30453823 C
1 C
30453824 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30454826 original size:159 final size:158
Alignment explanation
Indices: 30454478--30454836 Score: 384
Period size: 158 Copynumber: 2.3 Consensus size: 158
30454468 AACTCCGTAT
* * * * * *
30454478 GCTTAGGCATGGAATAAAGTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* * * ** *
30454543 CCGATCGGAGAGGCAGAATGCGCAAGCTTGGGATCAGCTCGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGATCGGAAAGGCAGAATGCGCAAGCTCGGGATCAGCCCAATCCCCCCTGTGTGCTGCCGATCC
* * *
30454608 TGCTGCCACAACTCTCGGTCTGGTCTGA
131 TACTGCCACAACTCTCGGTCTGATCGGA
* * * * * * *
30454636 TCTTAGAC-TAGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCA
* * * *
30454700 GCCGGTCGGAAAGGCATAATGCGCAAG-TCGGAGATC-GACCCAATCCCCCTTTTCGTGCTGCCG
65 GCCGATCGGAAAGGCAGAATGCGCAAGCTCGG-GATCAG-CCCAATCCCCCCTGT-GTGCTGCCG
* *
30454763 GTCCTACTGCCACAACTCTCGGTCTAGAT-GGG
127 ATCCTACTGCCACAACTCTCGGTCT-GATCGGA
*
30454795 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
30454837 AAAATGGGTG
Statistics
Matches: 162, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.03
158 87 0.54
159 67 0.41
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
CCGATCGGAAAGGCAGAATGCGCAAGCTCGGGATCAGCCCAATCCCCCCTGTGTGCTGCCGATCC
TACTGCCACAACTCTCGGTCTGATCGGA
Found at i:30454990 original size:26 final size:26
Alignment explanation
Indices: 30454954--30455006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30454944 CCAGTCCAAT
*
30454954 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30454980 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30455006 C
1 C
30455007 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30455301 original size:338 final size:341
Alignment explanation
Indices: 30454637--30455318 Score: 906
Period size: 338 Copynumber: 2.0 Consensus size: 341
30454627 CTGGTCTGAT
* *
30454637 CTTAGACTAGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGC
** * * * * *
30454702 CGGTCGGAAAGGCATAATGCGCAAGTCGGAGATCGACCCAATCCCCCTTTTCGTGCTGCCGGTCC
66 CGACCAGAAAGGCATAATACGCAAGTCGGAGATCGACCCAATCCCCCTCTACGTGCTGCCGATCC
* *
30454767 TACTGCCACAACTCTCGGTCTAGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACTCTCGGTCTA-A-GGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAA
* ** * ** * * * *
30454832 CCCACAAAATGGGTGTGCTGGCTTTCTGCCGGCCGGAGAGGCAGAATGCACAAGCCGAGGGTCGG
194 CCCACAAAACGGACGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCAAGGATCGG
*
30454897 CCTGGTCCCCCCCGCGTGCTGCCGATCCTACTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACT
259 CCTGGTCCCCCCCGCATGCTGCCGATCCTACTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACT
*
30454962 GGGAATGAACTCTGTATG
324 GGGAATGAACTCCGTATG
* * * *
30454980 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGC
* * * *
30455045 CGACCAGAGAGGCATAATACGCAAGTCGGGGATCGACCTAGTCCCCCTCTACGTGCTGCCGATCC
66 CGACCAGAAAGGCATAATACGCAAGTCGGAGATCGACCCAATCCCCCTCTACGTGCTGCCGATCC
* *
30455110 CGCTGCCACAAC-CTCCGG-CT-A-GGGCTTAGACATGCAATTAACTCCCTATGCCTAAGCCAAC
131 CACTGCCACAACTCT-CGGTCTAAGGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAAC
* ** *
30455171 CCACGAAACGGACGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGTAAGTCAAGGATCGGC
195 CCACAAAACGGACGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCAAGGATCGGC
* * * * **
30455236 CTGGTCCCCCCTGCATGTTGTCGATCCTGCTG-CTGCAACCCTCAGTCTGGTCCAATCTTAGACT
260 CTGGTCCCCCCCGCATGCTGCCGATCCTACTGTC-GCAACCCTCAGTCCAGTCCAATCTTAGACT
30455300 GGGAATGAACTCCGTATG
324 GGGAATGAACTCCGTATG
30455318 C
1 C
30455319 ATAAGTCAAC
Statistics
Matches: 294, Mismatches: 43, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
337 1 0.00
338 162 0.55
340 1 0.00
342 4 0.01
343 126 0.43
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (341 bp):
CTTAGACTAGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGC
CGACCAGAAAGGCATAATACGCAAGTCGGAGATCGACCCAATCCCCCTCTACGTGCTGCCGATCC
CACTGCCACAACTCTCGGTCTAAGGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACC
CACAAAACGGACGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCC
TGGTCCCCCCCGCATGCTGCCGATCCTACTGTCGCAACCCTCAGTCCAGTCCAATCTTAGACTGG
GAATGAACTCCGTATG
Found at i:30455345 original size:158 final size:155
Alignment explanation
Indices: 30454979--30455583 Score: 587
Period size: 158 Copynumber: 3.9 Consensus size: 155
30454969 AACTCTGTAT
* * * *
30454979 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
30455043 GCCGACCAGAGAGGCATAATACGCAAGTCGGGGATCGACCTAGTCCCCCTCTACGTGCTGCCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTAGTCCCCC-CTGCGTGCTGTCGAT
*
30455108 CCCGCTGCCACAA-CCTC--CGGCTAGG
129 CCCGCTGCCACAACCCTCGTCGGCCA-G
* * *
30455133 GCTTAGACATGCAATTAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * * *
30455197 GCC-AGCCGGAGAGGCAGAATGCGTAAGTCAAGGATCGGCCTGGTCCCCCCTGCATGTTGTCGAT
65 GCCGA-CCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGAT
* ** *
30455261 CCTGCTGCTGCAACCCTCAGTCTGGTCCAA
129 CCCGCTGCCACAACCCTC-GTC-GG-CCAG
* * * * *
30455291 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * *
30455355 GCTGACTGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCAATCTCCCTCTGCGTGCTGTCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTAGTC-CCCCCTGCGTGCTGTCGAT
*
30455420 CCCGCTGCCACAACCCTCGGTCCGGCTGAG
129 CCCGCTGCCACAACCCTC-GT-CGGC-CAG
* * *
30455450 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAACGAGCGTGC-GGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
30455514 CCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGTCTGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATCC
*
30455579 TGCTG
131 CGCTG
30455584 TTGGTCCTGC
Statistics
Matches: 359, Mismatches: 76, Indels: 29
0.77 0.16 0.06
Matches are distributed among these distances:
153 23 0.06
154 96 0.27
155 1 0.00
157 25 0.07
158 126 0.35
159 86 0.24
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGTCGGCCAG
Found at i:30457160 original size:158 final size:158
Alignment explanation
Indices: 30456860--30457360 Score: 377
Period size: 158 Copynumber: 3.2 Consensus size: 158
30456850 ACTCTGTATG
* * * * ** * * *
30456860 CTTAGACAT-GGAATGAACTCCGTAAGCCTAAACCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGCCAACCCATAAAACGAGCATACGGGCGCTCAA
* ** * * * * * *** * *
30456924 CCGACCGGAGAGATAGATTGCGCAAGCCGAGGATGGGC-CTGGCCCCCCCTGCGTGCTGTCAATC
65 CCGACCGAAGAGGCAGAATACGCAAGCCAAGGATCGACTC-AATCCCCCCTGCGTGCTGCCGATC
** * **
30456988 TTGCTGTCGTAACCCTCGGTCCAGTCT-GAT
129 CCGCTGCCACAACCCTCGGTCC-GTCTCGAT
* * * *
30457018 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATAAAACGAGCATACGGGCTCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCATAAAACGAGCATACGGGCGCTCAAC
* * * * * *
30457083 TGACCGAAGAGGCATAATAC-CAAGCCAGGGATCGGCTCGATCCCCCTCTGCTTGCTGCC-AGTC
66 CGACCGAAGAGGCAGAATACGCAAGCCAAGGATCGACTCAATCCCCC-CTGCGTGCTGCCGA-TC
* * * **
30457146 CCGCTGCCACAACCCTTGGTCCGACTGGGG
129 CCGCTGCCACAACCCTCGGTCCGTCTCGAT
* ** * * * * ** *
30457176 CTTAGAGAT-GGAATGAACTCACTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAA
1 CTTAGA-CTGGGAATGAACTCTGTATGCATAAGCCAACCCATAAAACGAGCATACGGGCGCTCAA
* * *
30457240 CCGGCCGGAGAGGCAGAATACGCAAGCCAAGGATCGACTCAATCCCCCCTGCGTGTTGCCGATCC
65 CCGACCGAAGAGGCAGAATACGCAAGCCAAGGATCGACTCAATCCCCCCTGCGTGCTGCCGATCC
* *
30457305 TGCTGCCACAACCCTCGGTCTGGT-TCGAT
130 CGCTGCCACAACCCTCGGTC-CGTCTCGAT
30457334 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
30457361 TTTGACTGAG
Statistics
Matches: 264, Mismatches: 69, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
157 25 0.09
158 213 0.81
159 26 0.10
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCATAAAACGAGCATACGGGCGCTCAAC
CGACCGAAGAGGCAGAATACGCAAGCCAAGGATCGACTCAATCCCCCCTGCGTGCTGCCGATCCC
GCTGCCACAACCCTCGGTCCGTCTCGAT
Found at i:30458389 original size:158 final size:157
Alignment explanation
Indices: 30457953--30458410 Score: 443
Period size: 159 Copynumber: 2.9 Consensus size: 157
30457943 GAAATGAGCG
* * * * * * *
30457953 TGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCTTGCTGTCGAACCTTCTGTCGTAACCCTCAG
1 TGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCATAACCCTCAG
* * * * *
30458018 TCCGATCTGATCTTAGATTAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGC
66 TCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * *
30458083 GATCGGTGAGCCGGTCGAAGAGGCATAA
130 GAGCGCTCAGCCGGTCGAAGAGGCAGAA
* * * * * * * * *
30458111 TGCACAAGCCAGGGATCGGCTCGGTCCCCCTCTGCGTGTTGCCGGTCCCACTGCCACAACCCTCG
1 TGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTACTGCCATAACCCTCA
** * * * * *
30458176 GTCCGG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAATCGGGTGT
65 GTCCGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
30458240 GTGGGCGCTCAGTCGGTCGGAGAGGCAGAA
128 GCGAGCGCTCAGCCGGTCGAAGAGGCAGAA
* * * *
30458270 TGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCATAACCCTCAG
1 TGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCATAACCCTCAG
* * * * *
30458335 TCTGGTCTGATCTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGC
66 TCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
30458400 G-GACGCTCAGC
130 GAG-CGCTCAGC
30458411 TGACCAGAGA
Statistics
Matches: 231, Mismatches: 63, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
157 2 0.01
158 108 0.47
159 120 0.52
160 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (157 bp):
TGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCATAACCCTCAG
TCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
AGCGCTCAGCCGGTCGAAGAGGCAGAA
Found at i:30458421 original size:158 final size:156
Alignment explanation
Indices: 30457953--30458445 Score: 429
Period size: 158 Copynumber: 3.1 Consensus size: 156
30457943 GAAATGAGCG
* * * * * *
30457953 TGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCTTGCTGTCGAACCTTCTGTCGTAACCCTCAG
1 TGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCATAACCCTCAG
* * * * * *
30458018 TCCGATCTGATCTTAGATTAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGC
66 TCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
* * * *
30458083 -GATCGGTGAGCCGGTCGAAGAGGCATAA
130 GGA-CGCTCAGCTGGTCG-AGAGGCAGAA
* * * * * * *
30458111 TGCACAAGCC-AGGGATCGGCTCGGTCCCCCTCTGCGTGTTGCCGGTCCCACTGCCACAACCCTC
1 TGCGCAAGCCGA-GGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTACTGCCATAACCCTC
* ** * * * *
30458175 GGTCCGG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AATCGGGT
64 AGTCCGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT-GAGC
* *
30458238 GTGTGGGCGCTCAG-TCGGTCGGAGAGGCAGAA
126 GTGCGGACGCTCAGCT-GGTC-GAGAGGCAGAA
* * * * *
30458270 TGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCATAACCCTCAG
1 TGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCATAACCCTCAG
* * * *
30458335 TCTGGTCTGATCTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGC
66 TCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
** * *
30458400 GGACGCTCAGCTGACCAGAGAGGTAGGA
130 GGACGCTCAGCTGGTC-GAGAGGCAGAA
*
30458428 TGCGTAAGCCGAGGATCG
1 TGCGCAAGCCGAGGATCG
30458446 AACGGGTGGT
Statistics
Matches: 257, Mismatches: 65, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 2 0.01
158 135 0.53
159 117 0.46
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
TGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCATAACCCTCAG
TCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
GACGCTCAGCTGGTCGAGAGGCAGAA
Found at i:30459437 original size:26 final size:26
Alignment explanation
Indices: 30459386--30459468 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 26
30459376 CCGATCCTAT
* * *
30459386 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
30459412 CTTAGACTGGGGATGAACTCCATATGGGCG
1 CTTAGACTGGGGATGAACTCCGTAT----G
30459442 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
30459468 C
1 C
30459469 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
26 23 0.48
30 25 0.52
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:30459445 original size:30 final size:30
Alignment explanation
Indices: 30459411--30459467 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
30459401 AACTCTGTAT
30459411 GCTTAGACTGGGGATGAACTCCATATGGGC
1 GCTTAGACTGGGGATGAACTCCATATGGGC
*
30459441 GCTTAGACTGGGGATGAACTCCGTATG
1 GCTTAGACTGGGGATGAACTCCATATG
30459468 CCTAAGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (30 bp):
GCTTAGACTGGGGATGAACTCCATATGGGC
Found at i:30459966 original size:26 final size:26
Alignment explanation
Indices: 30459930--30459982 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30459920 CCGATTTGAT
* *
30459930 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30459956 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30459982 C
1 C
30459983 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30460535 original size:170 final size:170
Alignment explanation
Indices: 30460283--30460598 Score: 456
Period size: 170 Copynumber: 1.9 Consensus size: 170
30460273 TTAGACATCG
* * * *
30460283 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCAGTCGAAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAG
** *
30460348 GCAGAATACGTAAGTCGGGGATCAGCCCGATCCCTCCTACATGCTGTCGATCTGGTTG-TCAGTC
66 GCAGAATACACAAGTCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCTGGTTGCT-AGTC
*
30460412 CTGCTGCCACAACCCTCAGTCTTGCTGGGTTTTACACATGC
130 CTGCTACCACAACCCTCAGTCTTGCTGGGTTTTACACATGC
* *
30460453 AATGAACTCCGTATTCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTC-AGAGA
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGA-AGA
* * * * * *
30460517 GGCAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCTTGTTGCTGGTC
65 GGCAGAATACACAAGTCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCTGGTTGCTAGTC
30460582 CTGCTACCACAACCCTC
130 CTGCTACCACAACCCTC
30460599 GGTCCGATCT
Statistics
Matches: 128, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
169 1 0.01
170 126 0.98
171 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (170 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAG
GCAGAATACACAAGTCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCTGGTTGCTAGTCC
TGCTACCACAACCCTCAGTCTTGCTGGGTTTTACACATGC
Found at i:30460629 original size:170 final size:170
Alignment explanation
Indices: 30460248--30460638 Score: 443
Period size: 170 Copynumber: 2.3 Consensus size: 170
30460238 AGTGCCACTG
* * * * * *
30460248 CCACAACCCTCGGTCAGGCTAGG-GCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCAGTCATGCT-GGATCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * **
30460312 TGAAACGGGCGTGCGGGTGCTCAGTCAGTCGAAGAGGCAGAATACGTAAGTCGGGGATCAGCCCG
65 CGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGGCAGAATACACAAGTCGGGGATCAGCCCG
* *
30460377 ATCCCTCCTACATGCTGTCGATCTGGTTGTCAGTCCTGCTG
130 ATCCCCCCTACATGCTGTCGATCTGGTTGTCAGTCCTGCTA
* * * * *
30460418 CCACAACCCTCAGTCTTGCTGGGTTTTACACATGCAATGAACTCCGTATTCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCATGCTGGATCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* *
30460483 GAAACGAGCGTGCGGGCGCTCAGCCAGTC-AGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCG
66 GAAACGAGCGTGCGGGCGCTCAGCCAGTCGA-AGAGGCAGAATACACAAGTCGGGGATCAGCCCG
* * * *
30460547 GTCCCCCCTACGTGCTGTCGATCTTGTTG-CTGGTCCTGCTA
130 ATCCCCCCTACATGCTGTCGATCTGGTTGTC-AGTCCTGCTA
* *
30460588 CCACAACCCTCGGTCCGAT-CT-GATCTTAGAC-TAGGAATGAACTCCGTATGC
1 CCACAACCCTCAGT-C-ATGCTGGATCTTACACAT-GGAATGAACTCCGTATGC
30460639 TCAGACATGG
Statistics
Matches: 184, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
169 5 0.03
170 175 0.95
171 3 0.02
172 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (170 bp):
CCACAACCCTCAGTCATGCTGGATCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGGCAGAATACACAAGTCGGGGATCAGCCCGA
TCCCCCCTACATGCTGTCGATCTGGTTGTCAGTCCTGCTA
Found at i:30460996 original size:26 final size:26
Alignment explanation
Indices: 30460956--30461006 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30460946 CGGTCCGATC
30460956 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
* * *
30460982 TTAGATTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
30461007 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:30461511 original size:159 final size:158
Alignment explanation
Indices: 30461133--30461630 Score: 418
Period size: 158 Copynumber: 3.1 Consensus size: 158
30461123 TCGCTGCCAG
* * * * * **
30461133 TCCTGTTGCCACAACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTCTGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCTGGTTGGGTCTTCGACATGGAATGAACTCCATATGCCTAAGC
* * * * * * *
30461198 CAACCCACAAAACGAGCGTG-CGGGTGCTTAACCGGCCGGAGAGGCAAAATGTGCAAGCCAGGGA
66 CAACCCACAAAACGAGCGTGTC-GGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGA
* * * * **
30461262 -CTGGCCTGGTTCCC-CCTGTGTGCTGTAGA
130 TC-AGCCCGG-TCCCTCTTGCGTGCTACAGA
** ** * * * * * *
30461291 TCCTATTGCTGCAACCTTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTTCATATGCCTAA
1 TCCTGCTGCCACAACCCTCGGTCTGGT-TGGGTCTTCGACAT-GGAATGAACTCCATATGCCTAA
* ** * * * *
30461354 GTCAACCCATGAAACGAGCGT-TCGG-GCATCGAGCCGATCGAAGAGGCATAATGCGTAAGTCGG
64 GCCAACCCACAAAACGAGCGTGTCGGTGC-TC-AGCCGACCGAAGAGGCAGAATGCGCAAGCCGG
* *
30461417 GGATC-GACGCGGTCCCTCTCTGCGTGCTACCGA
127 GGATCAG-CCCGGTCCCTCT-TGCGTGCTACAGA
*
30461450 TCCTGCTGCCACAACCCTCGGTCTGGTTGGGTCTTCGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCTGGTTGGGTCTTCGACATGGAATGAACTCCATATGCCTAAGC
* * * * *
30461515 CAACCCACAAAATGGGTGTGTGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
66 CAACCCACAAAACGAGCGTGTCGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGAT
*
30461580 CAGCCCGGTCCCTCTTGCGTGCTGCAGA
131 CAGCCCGGTCCCTCTTGCGTGCTACAGA
* * *
30461608 TCTTGCTGTCGCAACCCTCGGTC
1 TCCTGCTGCCACAACCCTCGGTC
30461631 CAATCCGATC
Statistics
Matches: 266, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 9 0.03
158 129 0.48
159 117 0.44
160 7 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TCCTGCTGCCACAACCCTCGGTCTGGTTGGGTCTTCGACATGGAATGAACTCCATATGCCTAAGC
CAACCCACAAAACGAGCGTGTCGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGAT
CAGCCCGGTCCCTCTTGCGTGCTACAGA
Found at i:30461676 original size:26 final size:26
Alignment explanation
Indices: 30461640--30461692 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30461630 CCAATCCGAT
* *
30461640 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30461666 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30461692 C
1 C
30461693 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30462587 original size:26 final size:26
Alignment explanation
Indices: 30462546--30462598 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30462536 CCTATCCGAT
*
30462546 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
30462572 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30462598 C
1 C
30462599 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30463536 original size:159 final size:158
Alignment explanation
Indices: 30463118--30463573 Score: 430
Period size: 159 Copynumber: 2.9 Consensus size: 158
30463108 GGTCCTGCTA
* *
30463118 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * *
30463183 GAATCGAGCGTGTGGGCGGTTAG-TCGAT--CGGAGAGGCAGAATGCTCAAGCCGGGGATCGGCC
66 GAAACGAGCGTGT--GCGGGT-GCTCGATGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCC
* * * ***
30463245 TTGTCCCCCCCTACATGCTGTCGATCTTGCTG
128 -CGTCCCCCTCTACATGCTGCCGATCCCACTG
* * * ** * * *
30463277 CCATAACCCTCGGT-TCGCTCTGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCATCCC
1 CCACAACCCTCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * *
30463340 ACGAAACGAGCGTGTG-GGCACTG-T-GTTGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGG
64 ACGAAACGAGCGTGTGCGG--GTGCTCGAT-GCCGGAGAGGCAAAATGCACAAGCCGGGGATCGG
**
30463402 CCCGATCCCCCTCTATGTGCTGCC-AGTCCCACTG
126 CCCG-TCCCCCTCTACATGCTGCCGA-TCCCACTG
* *
30463436 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* *
30463501 GAAAC-AG-GTGTGCGGGTGCTCAGACTGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCC
66 GAAACGAGCGTGTGCGGGTGCTC-GA-TGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCC
30463564 GGTCCTCCCT
129 -GTCC-CCCT
30463574 GCGTGCTATC
Statistics
Matches: 239, Mismatches: 40, Indels: 35
0.76 0.13 0.11
Matches are distributed among these distances:
156 6 0.03
157 9 0.04
158 11 0.05
159 202 0.85
160 11 0.05
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGTGCGGGTGCTCGATGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGT
CCCCCTCTACATGCTGCCGATCCCACTG
Found at i:30465309 original size:159 final size:160
Alignment explanation
Indices: 30464874--30465321 Score: 485
Period size: 159 Copynumber: 2.8 Consensus size: 160
30464864 CTGCTACCGT
* ** * *
30464874 AACCCTCGGTCTGGTCTGATCTTAGA-ATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
1 AACCCTCGGTCTGATCCAAGCTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * *
30464938 ACGAGCGTGTGGGTGCTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGATCC-AGTC
66 ACGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TC
*
30465002 CCCCCATGCGTGCTGTCAATCCTGCTACCAC
130 CCCCCATGCGTGCTGTCAATCCCGCTACCAC
* *
30465033 AACCCTCGGTCTGATCCAATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 AACCCTCGGTCTGATCCAAGCTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* ** * * * * * * ** *
30465097 ATGAGCGTACAAGCGCTGAGCCAGCCGGAGAGGTATAATGCGTGAGTCGGGGATCGACCCGATCC
66 ACGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
* * ** *
30465162 CCCTC-TGTGTGTTGTCGGTCCCGCTGCCAC
131 CCC-CATGCGTGCTGTCAATCCCGCTACCAC
* *** *
30465192 AACCTTCGGTCTGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 AACCCTCGGTCTGATC-CAAGCTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * *
30465255 AACGGGCGTGTAGGTGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATC
65 AACGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC
30465320 CC
130 CC
30465322 TCATGTGGGC
Statistics
Matches: 234, Mismatches: 50, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
158 1 0.00
159 230 0.98
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (160 bp):
AACCCTCGGTCTGATCCAAGCTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
CCCCATGCGTGCTGTCAATCCCGCTACCAC
Found at i:30467263 original size:159 final size:158
Alignment explanation
Indices: 30466839--30467272 Score: 398
Period size: 159 Copynumber: 2.8 Consensus size: 158
30466829 AACTCTGTAT
* *
30466839 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * * *
30466904 CCGGGCGGAGAGGCAAAATGCGCAAGCCGAAG-A-TGGCCCGATCCCCCCTGCGTGCTATCGATT
66 CCGACCGGAGAGGCAAAATGCACAAGCTGGAGAACT-GCCCGGTCCCCCCTGCGTGCTATCCAGT
* ** **
30466967 CTACTGTCGTAATGCTCGGTCCAGTCTGA
130 CTACTGCCACAACCCTCGGTCCAGTCTGA
* * * * * * * * * * *
30466996 TCTTAGAC-TAGAATGAACTTCGC-ATGCCTTAGTCAACCCACGAAATGAGCATTCGGGCACTGA
1 GCTTAGACATGGAATGAAC-TCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
30467059 ACCGACCAGAGAGGCATAATAG-ACAAGCTGGAGATC-GACCCGGTCCACCTCTGCGTGCTA-CC
65 GCCGACCGGAGAGGCAAAAT-GCACAAGCTGGAGAACTG-CCCGGTCC-CCCCTGCGTGCTATCC
* *
30467121 AGTCTCGCTGCCACAACCCTCGGTCCAG-CTGGG
127 AGTCT-ACTGCCACAACCCTCGGTCCAGTCT-GA
* *
30467154 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * **
30467219 CCAACCGGAGAGGCAAAATGCACAAGCTGGGGAACTGCAAGGTCCCCCCTGCGT
66 CCGACCGGAGAGGCAAAATGCACAAGCTGGAGAACTGCCCGGTCCCCCCTGCGT
30467273 ACTGCCGATC
Statistics
Matches: 210, Mismatches: 55, Indels: 23
0.73 0.19 0.08
Matches are distributed among these distances:
156 64 0.30
157 24 0.11
158 48 0.23
159 73 0.35
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCACAAGCTGGAGAACTGCCCGGTCCCCCCTGCGTGCTATCCAGTC
TACTGCCACAACCCTCGGTCCAGTCTGA
Found at i:30467339 original size:158 final size:156
Alignment explanation
Indices: 30466840--30467339 Score: 429
Period size: 158 Copynumber: 3.2 Consensus size: 156
30466830 ACTCTGTATG
* *
30466840 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
30466905 CGGGCGGAGAGGCAAAATGCGCAAGCCGAAG-A-TGGCCCGATCCCCCCTGCGTGCTATCGATTC
66 CGACCGGAGAGGCAAAATGCACAAGCTGGAGAACT-GCCCGGTCCCCCCTGCGTGCTACCGA-TC
* * * * *
30466968 TACTGTCGTAATGCTCGGTCCAGTCTGAT
129 TGCTGCCGCAA-CCTCGGTCCAGTTTGAT
* * * * * * * * * * * *
30466997 CTTAGAC-TAGAATGAACTTCGCATGCCTTAGTCAACCCACGAAATGAGCATTCGGGCACTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
30467061 CGACCAGAGAGGCATAATAG-ACAAGCTGGAGATC-GACCCGGTCCACCTCTGCGTGCTACC-AG
66 CGACCGGAGAGGCAAAAT-GCACAAGCTGGAGAACTG-CCCGGTCC-CCCCTGCGTGCTACCGA-
* * * **
30467123 TCTCGCTGCCACAACCCTCGGTCCAGCTGGGG
127 TCT-GCTGCCGCAA-CCTCGGTCCAGTTTGAT
* * *
30467155 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
30467220 CAACCGGAGAGGCAAAATGCACAAGCTGGGGAACTGCAAGGTCCCCCCTGCGTACTGCCGATCCT
66 CGACCGGAGAGGCAAAATGCACAAGCTGGAGAACTGCCCGGTCCCCCCTGCGTGCTACCGAT-CT
* *
30467285 GCTACCGCAACCTTCGGTCCGGTTTGAT
130 GCTGCCGCAACC-TCGGTCCAGTTTGAT
30467313 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30467340 TTAGACTGGG
Statistics
Matches: 259, Mismatches: 71, Indels: 25
0.73 0.20 0.07
Matches are distributed among these distances:
156 66 0.25
157 22 0.08
158 92 0.36
159 78 0.30
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAAAATGCACAAGCTGGAGAACTGCCCGGTCCCCCCTGCGTGCTACCGATCTG
CTGCCGCAACCTCGGTCCAGTTTGAT
Found at i:30467342 original size:26 final size:26
Alignment explanation
Indices: 30467313--30467365 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30467303 CCGGTTTGAT
*
30467313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30467339 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30467365 C
1 C
30467366 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30467752 original size:26 final size:26
Alignment explanation
Indices: 30467711--30467763 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30467701 CTGGTTCGAT
30467711 CTTAGACTAGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
* * *
30467737 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
30467763 C
1 C
30467764 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCGGTATG
Found at i:30468408 original size:159 final size:158
Alignment explanation
Indices: 30468063--30468425 Score: 374
Period size: 158 Copynumber: 2.3 Consensus size: 158
30468053 AACTCTACAT
* * ** * *
30468063 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGATTGTGAGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAAAGAGCGTCAGAGCACTCAA
** * * * * * *
30468128 TCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCTCCCCTGCTTGCTGTTGATCT
66 TCGACCAGAGAGGCAGAATACAAAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTGTTGATCC
* * * ** *
30468193 TGCTACCGCAACCCTCGGTCTGTTTTGA
131 CGCTACCACAACCCTCGGTCCGGCTGGA
* * *
30468221 TCTTAGAC-TGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGCGTACAG-GCACT-
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGACAACCCACGAAAAGAGCGT-CAGAGCACTC
* * * * *
30468283 GAGCTGACCAGAGAGGCATAATACAAAAGTCAGGGATCGACCTGATCCCCCTCTGCATGCTGTT-
64 AATC-GACCAGAGAGGCAGAATACAAAAGCCAGGGATCGACCCGATCCCCC-CTGCATGCTGTTG
* *
30468347 AGTCCCGCTACCACAACCCTTGGTCCGGCTGGG
127 A-TCCCGCTACCACAACCCTCGGTCCGGCTGGA
*
30468380 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAA
30468426 CAGGCGTGCG
Statistics
Matches: 166, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 86 0.52
159 74 0.45
160 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAAAGAGCGTCAGAGCACTCAA
TCGACCAGAGAGGCAGAATACAAAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTGTTGATCC
CGCTACCACAACCCTCGGTCCGGCTGGA
Found at i:30468478 original size:159 final size:158
Alignment explanation
Indices: 30468063--30468481 Score: 407
Period size: 159 Copynumber: 2.6 Consensus size: 158
30468053 AACTCTACAT
* ** * *
30468063 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GATTGTGAGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGAGCGTGCGGGCGCTCA
** * * * *
30468127 ATCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCTCCCCTGCTTGCTGTTGATC
66 GCCGATCGGAGAGGCAGAATGCA-AAACCAGGGATCGACCCGATCCCCCCTGCATGCTGTTGATC
** * * ** *
30468192 TTGCTACCGCAACCCTCGGTCTGTTTTGA
130 CCGCTACCACAACCCTCGGTCCGGCTGGA
* * * * * * *
30468221 TCTTAGAC-TGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA-AGAGCGTACAGGCACTG
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGAGCGTGCGGGCGCTC
* * * * * * *
30468284 AGCTGACCAGAGAGGCATAATACAAAAGTCAGGGATCGACCTGATCCCCCTCTGCATGCTGTT-A
65 AGCCGATCGGAGAGGCAGAATGCAAAA-CCAGGGATCGACCCGATCCCCC-CTGCATGCTGTTGA
* *
30468348 GTCCCGCTACCACAACCCTTGGTCCGGCTGGG
128 -TCCCGCTACCACAACCCTCGGTCCGGCTGGA
*
30468380 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACAG-GCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGAGCGTGCGGGCGCTCA
* * *
30468444 GCCGATCGGAGTGGCAGAATGCGTAAACCGGGGATCGA
66 GCCGATCGGAGAGGCAGAATGC-AAAACCAGGGATCGA
30468482 TCGGGTCCTC
Statistics
Matches: 203, Mismatches: 50, Indels: 15
0.76 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 84 0.41
159 108 0.53
160 7 0.03
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGAGCGTGCGGGCGCTCA
GCCGATCGGAGAGGCAGAATGCAAAACCAGGGATCGACCCGATCCCCCCTGCATGCTGTTGATCC
CGCTACCACAACCCTCGGTCCGGCTGGA
Found at i:30468580 original size:26 final size:26
Alignment explanation
Indices: 30468538--30468590 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30468528 TCGGTCTGAT
30468538 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30468564 CTTAGACTGAGG-GTGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
30468590 C
1 C
30468591 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30469571 original size:159 final size:159
Alignment explanation
Indices: 30469267--30470081 Score: 524
Period size: 159 Copynumber: 5.1 Consensus size: 159
30469257 GTGCCTTAAA
* * * * * * *
30469267 ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGGCACTCA
1 ATCTTAGAATG-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** ** * * * * * * *
30469332 GTCGATCG-GAGAGGCAGAATGCGTAAGTCGGGGA-CAAGCCTGGTCCCACC-GTACATGCTGTC
65 ACCGGCCGAGAGAGGCAGAATGCGCAAGTCAGGGATC-AGCCCGGTCCC-CCTCTGCGTGCTGCC
** * *** *
30469394 GATCCTGCTACTGTAACCCTCGGTCCAGTCT-G
128 GATCCCACTGCCACAACCCTCAGTCC-GTCTGG
* * * * * * *
30469426 ATCTTAGATTGGGATTGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 ATCTTAGAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
30469491 GCCGGCCGA-AGAGGCATAATGCGCAAGTCGGGGATCAACCTGGTCCCCCTCTGCGTGCTGCC-A
65 ACCGGCCGAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGA
* * *
30469554 GTCCCACTGCAACAACCCTCAGTCTGGCTGG
130 -TCCCACTGCCACAACCCTCAGTCCGTCTGG
** * * * * ** *
30469585 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCCTGCAGATGCTGA
1 ATCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * ** * * * *
30469650 ACCAGTC-AGAGAGGCAGAATGCATAGGTCCGGGATCAGCCCGGT-CCTCTCTGTGTGCTGCCGA
65 ACCGGCCGAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGA
*** * * *
30469713 TCCTGTTGCCACAACCCTCAATTCGATCT-A
130 TCCCACTGCCACAACCCTCAGTCCG-TCTGG
* * ** * * * * *
30469743 ATCTTAGACTAGGAATGAAATCTGTATGCCTAAGTCAACCCAAGAAACGAGTGTGTGGGTGCTCA
1 ATCTTAGAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
30469808 ACCGGCCG-GAGAGGCATAATGTGCAAGCCAGGGATTAGCCCGATCCCCCGT-TGCGTGCTGCAG
65 ACCGGCCGAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCC-TCTGCGTGCTGCCG
* * * * *
30469871 GTCCCGCTGCCACAATCCTCGGTCCGACTGG
129 ATCCCACTGCCACAACCCTCAGTCCGTCTGG
** * *
30469902 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
1 ATCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * ** *
30469967 GCC-GACTAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCTTGGTCCCCC-CTACGTGCTGCCGA
65 ACCGGCCGAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGA
* ** * *
30470030 TCCTACTGCTGCAACCCTCAGTCTGGT-TCG
130 TCCCACTGCCACAACCCTCAGTC-CGTCTGG
*
30470060 ATCTTAGACTGGGAATGAACTC
1 ATCTTAGAAT-GGAATGAACTC
30470082 TAGATGCTTA
Statistics
Matches: 495, Mismatches: 141, Indels: 41
0.73 0.21 0.06
Matches are distributed among these distances:
157 2 0.00
158 169 0.34
159 319 0.64
160 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
ATCTTAGAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGAT
CCCACTGCCACAACCCTCAGTCCGTCTGG
Found at i:30469980 original size:317 final size:316
Alignment explanation
Indices: 30469269--30470078 Score: 799
Period size: 317 Copynumber: 2.6 Consensus size: 316
30469259 GCCTTAAAAT
* * * *
30469269 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGGCACTCAG
1 CTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAG
* * * * * *
30469333 TCGATCGGAGAGGCAGAATGCGTAAGTCGGGGA-CAAGCCTGGTCCCACCGTACATGCTGTCGAT
65 CCGATCAGAGAGGCAGAATGCGTAAGTCAGGGATC-AGCCTGGTCCCACTGT--GTGCTGCCGAT
*** * * * * * *
30469397 CCTGCTACTGTAACCCTCGGTCCAGTCTGATCTTAGATTGGGATTGAACTCCGTATGCATAAGTC
127 CCTGCTACCACAACCCTCAGTCCAGTCTAATCTTAGACTAGGAATGAAATCCGTATGCATAAGTC
* * * * * *
30469462 AACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATC
192 AACCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATC
* * * *
30469527 AACCTGGTCCCCCTCTGCGTGCTGCCAGTCCCACTGCAACAACCCTCAGTCTGGCTGGGG
257 AACCCGATCCCCCTCTGCGTGCTGCCAGTCCCACTGCAACAACCCTCAGTCCGACTGGGG
* * *** * *
30469587 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCCTGCAGATGCTGAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAGC
* * * * *
30469652 C-AGTCAGAGAGGCAGAATGCATAGGTCCGGGATCAGCCCGGTCCTCTCTGTGTGCTGCCGATCC
66 CGA-TCAGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCTGGTCC-CACTGTGTGCTGCCGATCC
* * * * * *
30469716 TGTTGCCACAACCCTCAATTC-GATCTAATCTTAGACTAGGAATGAAATCTGTATGCCTAAGTCA
129 TGCTACCACAACCCTCAGTCCAG-TCTAATCTTAGACTAGGAATGAAATCCGTATGCATAAGTCA
* * * * * *
30469780 ACCCAAGAAACGAGTGTGTGGGTGCTCAACCGGCCGGAGAGGCATAATGTGCAAGCCAGGGATTA
193 ACCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCA
* * * * *
30469845 GCCCGATCCCCCGT-TGCGTGCTG-CAGGTCCCGCTGCCACAATCCTCGGTCCGACTGGGG
258 ACCCGATCCCCC-TCTGCGTGCTGCCA-GTCCCACTGCAACAACCCTCAGTCCGACTGGGG
* *
30469904 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAGC
* * * **
30469969 CGA-CTAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCTTGGTCCCCCCTACGTGCTGCCGATCC
66 CGATC-AGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCTGGT-CCCACTGTGTGCTGCCGATCC
* * ** ** * *
30470033 TACTGCTGCAACCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAA
129 TGCTACCACAACCCTCAGTCCAGTCT-AATCTTAGACTAGGAATGAA
30470079 CTCTAGATGC
Statistics
Matches: 397, Mismatches: 83, Indels: 25
0.79 0.16 0.05
Matches are distributed among these distances:
316 5 0.01
317 295 0.74
318 90 0.23
319 7 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (316 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAGC
CGATCAGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCTGGTCCCACTGTGTGCTGCCGATCCTG
CTACCACAACCCTCAGTCCAGTCTAATCTTAGACTAGGAATGAAATCCGTATGCATAAGTCAACC
CAAGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAACC
CGATCCCCCTCTGCGTGCTGCCAGTCCCACTGCAACAACCCTCAGTCCGACTGGGG
Found at i:30470389 original size:343 final size:342
Alignment explanation
Indices: 30469745--30470457 Score: 878
Period size: 343 Copynumber: 2.1 Consensus size: 342
30469735 TCGATCTAAT
* * * * * *
30469745 CTTAGACTAGGAATGAAATCTGTATGCCTAAGTCAACCCAAGAAACGAGTGTGTGGGTGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAAC
* ** * * * * *
30469810 CGGCCGGAGAGGCATAATGTGCAAGCC-AGGGATTAGCCCGATCCCCCGTTGCGTGCTG-CAGGT
66 CGACCGGAGAGGCATAATGCACAAGCCGA-GGATCAGCCCGGTCCCCCGCTACGTGCTGTC-GAT
* * *
30469873 CCCGCTGCCACAATCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
30469938 AACCCATGAAACGGGCGTGCGGGCACTCAGCC-GACTAGAGAGGCAGAATGCGCAAG-TCAGGGA
194 AACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTC-GGAGAGGCAGAATGCGCAAGCT-GGGGA
* ** * * * * *
30470001 TCAGCTTGGTCCCCCCTACGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCTGGT-TCGATCTT
257 TCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCT-GATCTT
30470065 AGACTGGGAATGAACTCTAGATG
321 AGACTGGGAATGAACTC-AGATG
*
30470088 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAAC
* * * * *
30470153 CTATCGGAGAGGCATAATGCACAAGCCGAGGATCAGCTCGGTCCCCCGCTATGTGCTGTCGTTCC
66 CGACCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCGCTACGTGCTGTCGATCC
*
30470218 CACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
30470283 CCCACAAAACGGGCGTACGGGCGCTTAGTCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGG
196 CCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGG
* * * * * *
30470348 CCCGGTCCCTCCTGCATGCTACCGTTCCTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACT
261 CCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACT
* *
30470413 GGGAATGAACTCCGTATA
326 GGGAATGAACTCAG-ATG
30470431 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTGGGGATGAACTCCGTATGC
30470458 TTAGACTGGG
Statistics
Matches: 316, Mismatches: 48, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
342 1 0.00
343 309 0.98
344 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAAC
CGACCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCGCTACGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGG
CCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACT
GGGAATGAACTCAGATG
Found at i:30470482 original size:26 final size:26
Alignment explanation
Indices: 30470405--30470483 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
30470395 CCGGTCTGAT
* *
30470405 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGGATGAACTCCGTATG
30470431 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
30470457 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
30470483 C
1 C
30470484 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:30470967 original size:159 final size:155
Alignment explanation
Indices: 30470795--30471284 Score: 464
Period size: 159 Copynumber: 3.1 Consensus size: 155
30470785 CGGTCGAAAG
* * * *
30470795 GGCATAATGCGCAAGCCAGGAATCAACCCGATCCCCCTCTACGTGCTATC-AGTCCCGCTGCCAC
1 GGCAGAATGCGCAAGCCAGG-ATCAACCCGATCCCCC-CTGCGTGCTACCGA-TCTCGCTGCCAC
**
30470859 AATCCTCGATCTGGCTGGGGCTTAGAGATGGAATGAACTCCCTACACCTAAGCCAACCCACGAAA
63 AA-CCTCGATCTGGCTGGGGCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
** *
30470924 CGGGCGTCCGGGCGCTCAGCCGACAGGAGA
126 CGGGCGTATGGGCGCTCAGCCGACCGGAGA
** * * * * *
30470954 GGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCTTGCTGCCGCAA
1 GGCAGAATGCGCAAGCCA-GGATCAACCCGATCCCCCCTGCGTGCTACCGATCTCGCTGCCACAA
* * * * ** * * * *
30471019 CCTTCGGTC-CGATCCGATCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAA
65 CC-TCGATCTGGCT-GGGGCTTAGAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG-AAA
** * * * *
30471083 CTAGCATGTGGGTGCTCAGTCGACCGGAGA
126 CGGGCGTATGGGCGCTCAGCCGACCGGAGA
* * *
30471113 GGCATAATGCGTAAGCTGAGGATCAACCCGATCCCCCGCTGCGTGCTACCGATCTCGCTGCCACA
1 GGCAGAATGCGCAAGC-CAGGATCAACCCGATCCCCC-CTGCGTGCTACCGATCTCGCTGCCACA
* *
30471178 ACCCTCGAT-TCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCATGAAA
64 A-CCTCGATCT-GGCTGGGGCTTAGA-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * *
30471242 TGGACGTATGGGCGCTCAGCCGGCCGGAGA
126 CGGGCGTATGGGCGCTCAGCCGACCGGAGA
30471272 GGCAGAATGCGCA
1 GGCAGAATGCGCA
30471285 GGTCGGGGAT
Statistics
Matches: 255, Mismatches: 64, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 60 0.24
159 118 0.46
160 67 0.26
161 5 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (155 bp):
GGCAGAATGCGCAAGCCAGGATCAACCCGATCCCCCCTGCGTGCTACCGATCTCGCTGCCACAAC
CTCGATCTGGCTGGGGCTTAGAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
GTATGGGCGCTCAGCCGACCGGAGA
Found at i:30471077 original size:158 final size:156
Alignment explanation
Indices: 30470888--30471374 Score: 447
Period size: 159 Copynumber: 3.1 Consensus size: 156
30470878 GCTTAGAGAT
** ** *
30470888 GGAATGAACTCCCTACACCTAAGCCAACCCACGAAACGGGCGTCCGGGCGCTCAGCCGACAGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAGCCGACCGGAG
*
30470953 AGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCTTGCTGCCGCA
66 AGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTTGCTGCCGCA
* *
30471018 ACCTTCGGTCCGATCCGATCATAGACTG
130 ACCCTCGGT-CGATCCGATCTTAGACTG
* * ** * * * *
30471046 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACTAGCATGTGGGTGCTCAGTCGACCGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACG-AAACGGGCGTATGGGCGCTCAGCCGACCGGA
* * * ** * * * *
30471111 GAGGCATAATGCGTAAGCTGAGGATCAACCCGATCCCCCGCTGCGTGCTACCGATCTCGCTGCCA
65 GAGGCAGAATGCGCAAGCAG-GGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATCTTGCTGCCG
* * * **
30471176 CAACCCTCGATTCG-GCTGGGGCTTAGACAT-
128 CAACCCTCG-GTCGATC-CGATCTTAGAC-TG
* * * * *
30471206 GGAATGAACTCCCTATGCCTAAGCCTACCCATGAAATGGACGTATGGGCGCTCAGCCGGCCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAGCCGACCGGAG
* * * * * * * **
30471271 AGGCAGAATGCGCAGGTCGGGGATTGGCCCGGTCCTCCCTGCATGCTGTCGATCCTGCTATCGCA
66 AGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTTGCTGCCGCA
* * *
30471336 GCCCTCGGTCTAGTCTGATCTTAGACTG
130 ACCCTCGGTCGA-TCCGATCTTAGACTG
30471364 GGAATGAACTC
1 GGAATGAACTC
30471375 TGTATGCTTA
Statistics
Matches: 253, Mismatches: 66, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 75 0.30
159 103 0.41
160 70 0.28
161 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTTGCTGCCGCAA
CCCTCGGTCGATCCGATCTTAGACTG
Found at i:30471215 original size:318 final size:316
Alignment explanation
Indices: 30470632--30471381 Score: 880
Period size: 318 Copynumber: 2.4 Consensus size: 316
30470622 TCAGCCGGTT
* * * ** * *
30470632 GGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCTTATGTGCTGTTGATGCTACTAT
1 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT-CTGCTAT
* * * * *
30470697 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATTAACTCCATATGCCTAAGTCAACATACG
65 CGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACG
* **
30470762 AAACAAGCATGCGGGCCCTGAGCCGGTCGAAAGGGCATAATGCGCAAGCCAGGAATCAACCCGAT
130 AAACAAGCATGCGGGCCCTCAGCCGACCGAAAGGGCATAATGCGCAAGCCAGGAATCAACCCGAT
* * * *
30470827 CCCCCTCTACGTGCTATCAGTCCCGCTGCCACAATCCTCGATCTGGCTGGGGCTTAGAGATGGAA
195 CCCCCGCTACGTGCTACCAGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAA
* *
30470892 TGAACTCCCTACACCTAAGCCAACCCACGAAACGGGCGTCCGGGCGCTCAGCCGACA
260 TGAACTCCCTACACCTAAGCCAACCCACGAAACGGACGTACGGGCGCTCAGCCGACA
* * * **
30470949 GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCTTGCTGC
1 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC-TGCTAT
* * * *
30471014 CGCAACCTTCGGTCCGATCCGATCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
65 CGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACG
* * ** * * * *
30471079 AAAACTAGCATGTGGGTGCTCAGTCGACCG-GAGAGGCATAATGCGTAAGCTGAGG-ATCAACCC
130 -AAACAAGCATGCGGGCCCTCAGCCGACCGAAAG-GGCATAATGCGCAAGC-CAGGAATCAACCC
* *
30471142 GATCCCCCGCTGCGTGCTACC-GATCTCGCTGCCACAACCCTCGAT-TCGGCTGGGGCTTAGACA
192 GATCCCCCGCTACGTGCTACCAG-TCCCGCTGCCACAACCCTCGATCT-GGCTGGGGCTTAGACA
** * * * * * *
30471205 TGGAATGAACTCCCTATGCCTAAGCCTACCCATGAAATGGACGTATGGGCGCTCAGCCGGCC
255 TGGAATGAACTCCCTACACCTAAGCCAACCCACGAAACGGACGTACGGGCGCTCAGCCGACA
* * * * *
30471267 GGAGAGGCAGAATGCGCAGGTCGGGGATTGGCCCGGTCCTCCCTGCATGCTGTCGATCCTGCTAT
1 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT-CTGCTAT
* * *
30471332 CGCAGCCCTCGGT-CTAGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
65 CGCAACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGC
30471382 TTAGACTGGG
Statistics
Matches: 361, Mismatches: 64, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
316 1 0.00
317 113 0.31
318 243 0.67
319 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCTGCTATC
GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGA
AACAAGCATGCGGGCCCTCAGCCGACCGAAAGGGCATAATGCGCAAGCCAGGAATCAACCCGATC
CCCCGCTACGTGCTACCAGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAAT
GAACTCCCTACACCTAAGCCAACCCACGAAACGGACGTACGGGCGCTCAGCCGACA
Found at i:30471225 original size:160 final size:156
Alignment explanation
Indices: 30470720--30471284 Score: 460
Period size: 159 Copynumber: 3.6 Consensus size: 156
30470710 CCGGTCTGAT
* * * ** * * * *
30470720 CTTAGAC-TGAGAATTAACTCCATATGCCTAAGTCAACATACGAAACAAGCATGCGGGCCCTGAG
1 CTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATCCGGGCGCTCAG
* * * *
30470784 CCGGTC--GAAAGGGCATAATGCGCAAGCCAGGAATCAACCCGATCCCCCTCTACGTGCTATC-A
65 CC-GACAGGAGA-GGCATAATGCGCAAGCCAGG-ATCAACCCGATCCCCC-CTGCGTGCTACCGA
* *
30470846 GTCCCGCTGCCACAATCCTCGATCTGGCTGGGG
126 -TCTCGCTGCCACAACCCTCGATC-GGCTGGGG
* ** * *
30470879 CTTAGAGATGGAATGAACTCCCTACACCTAAGCCAACCCACGAAACGGGCGTCCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATCCGGGCGCTCAGC
* ** * * * *
30470944 CGACAGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCTT
66 CGACAGGAGAGGCATAATGCGCAAGCCA-GGATCAACCCGATCCCCCCTGCGTGCTACCGATCTC
* * * * * * **
30471009 GCTGCCGCAACCTTCGGTCCGATCCGAT
130 GCTGCCACAACCCTCGATCGGCT-GGGG
* * * * ** *
30471037 CATAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACTAGCATGTGGGTGCTCA
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG-AAACGAGCATCCGGGCGCTCA
* * * *
30471101 GTCGACCGGAGAGGCATAATGCGTAAGCTGAGGATCAACCCGATCCCCCGCTGCGTGCTACCGAT
64 GCCGACAGGAGAGGCATAATGCGCAAGC-CAGGATCAACCCGATCCCCC-CTGCGTGCTACCGAT
30471166 CTCGCTGCCACAACCCTCGATTCGGCTGGGG
127 CTCGCTGCCACAACCCTCGA-TCGGCTGGGG
* * * *
30471197 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCATGAAATGGACGTAT--GGGCGCTCA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-CGA-GCATCCGGGCGCTCA
* * *
30471260 GCCGGCCGGAGAGGCAGAATGCGCA
64 GCCGACAGGAGAGGCATAATGCGCA
30471285 GGTCGGGGAT
Statistics
Matches: 313, Mismatches: 79, Indels: 28
0.75 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 63 0.20
159 164 0.52
160 75 0.24
161 8 0.03
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATCCGGGCGCTCAGC
CGACAGGAGAGGCATAATGCGCAAGCCAGGATCAACCCGATCCCCCCTGCGTGCTACCGATCTCG
CTGCCACAACCCTCGATCGGCTGGGG
Found at i:30471384 original size:26 final size:26
Alignment explanation
Indices: 30471355--30471405 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30471345 CTAGTCTGAT
*
30471355 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30471381 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
30471406 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30471775 original size:26 final size:26
Alignment explanation
Indices: 30471724--30471776 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30471714 CCGGTCTGAT
* *
30471724 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATAAACCCCATATG
*
30471750 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGAC-TGGGAATAAACCCCATATG
30471776 C
1 C
30471777 CTAAGACAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACCCCATATG
Found at i:30472255 original size:184 final size:184
Alignment explanation
Indices: 30471929--30472275 Score: 439
Period size: 184 Copynumber: 1.9 Consensus size: 184
30471919 ATGAACTCTG
* * *** * **
30471929 ATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCCGTCGGTCGGAGAGGCATAATGCGTA
1 ATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCATAATACACA
* * * **
30471994 AGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCTTCGATCTGA
66 AGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCAA
* *
30472059 TCCGATCTTAGAC-TAGGAATGAACTCCATATGCTTAGATTGCGATGAACTTCGT
131 TCCGAGCTTAGACAT-GCAATGAACTCCATATGCTTAGATTGCGATGAACTTCGT
*
30472113 ATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGTGCTCAACCGGTCGGAGAGGCATAATACACA
1 ATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCATAATACACA
* * * *
30472178 TGCTGGGGATCAGCCCGGTTCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTC-AGTCCA
66 AGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCGA-TCCA
* * *
30472242 A-CTGGGGCTTAGACATGCAATGAACTCCCTATGC
130 ATC-CGAGCTTAGACATGCAATGAACTCCATATGC
30472276 CTAAGCCAAC
Statistics
Matches: 137, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
183 2 0.01
184 134 0.98
185 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (184 bp):
ATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCATAATACACA
AGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCAA
TCCGAGCTTAGACATGCAATGAACTCCATATGCTTAGATTGCGATGAACTTCGT
Found at i:30472443 original size:26 final size:26
Alignment explanation
Indices: 30472407--30472459 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30472397 CTGGTCTGAT
*
30472407 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30472433 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30472459 C
1 C
30472460 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30473156 original size:26 final size:24
Alignment explanation
Indices: 30473127--30473182 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 24
30473117 GGCTCAAAAT
*
30473127 CTTACATTGGGAATGAACTTCGTATG
1 CTTACA-T-GGAATGAACTCCGTATG
30473153 CTTAGACATGGAATGAACTCCGTATG
1 CTT--ACATGGAATGAACTCCGTATG
30473179 CTTA
1 CTTA
30473183 AGCCAACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 1 0.04
26 22 0.81
27 1 0.04
28 3 0.11
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (24 bp):
CTTACATGGAATGAACTCCGTATG
Found at i:30473452 original size:158 final size:158
Alignment explanation
Indices: 30473153--30473514 Score: 354
Period size: 158 Copynumber: 2.3 Consensus size: 158
30473143 ACTTCGTATG
* * * *
30473153 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCTACGAAACGAGCGTGCGGTCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCTACGAAACAAGCGTACGGTCGCTGAGC
* * * * * * *
30473218 CGGTCGGAGAGGTAGATTACGCAAGCCGGGGATCGGCCCGGCCCCCCCTCCGTGCTATCGATCCT
66 CGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGCCCCCCCTCCGTGCTACCGATCCC
* *
30473283 GCTATCGCAACCCTCAATCCGGTCCGAT
131 GCTACCACAACCCTCAATCCGGTCCGAT
* * *
30473311 CTTAGACTTGGAATGAACTCCGTATGCATAAGTCAACC-ATGAAACAAGCGTACAGGT-GCTGAG
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCTACGAAACAAGCGTAC-GGTCGCTGAG
* * ** * * * * *
30473374 CCGATCGAAGAGGCATAATGCGCAATTCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCGGTC
65 CCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGG-CCCCCCCTCCGTGCTACCGATC
* * ** * **
30473439 CCGCTGCCACAACCCTCAGTCC-AACTGGGG
129 CCGCTACCACAACCCTCAATCCGGTC-CGAT
* *
30473469 CTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAAC
1 CTTAGACATGGAATGAACTC-CGTATGCATAAGCCAACCTACGAAAC
30473515 GGGCGTGCGG
Statistics
Matches: 163, Mismatches: 36, Indels: 9
0.78 0.17 0.04
Matches are distributed among these distances:
157 50 0.31
158 106 0.65
159 7 0.04
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCTACGAAACAAGCGTACGGTCGCTGAGC
CGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGCCCCCCCTCCGTGCTACCGATCCC
GCTACCACAACCCTCAATCCGGTCCGAT
Found at i:30473654 original size:110 final size:110
Alignment explanation
Indices: 30473435--30473655 Score: 334
Period size: 110 Copynumber: 2.0 Consensus size: 110
30473425 GCGTGCTGCC
* *
30473435 GGTCCCGCTGCCACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAA
1 GGTCCCGCTACCACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * *
30473500 GCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGGCCGGAGAG
66 GCCAACCCACGAAACGGGCGTACAGGCACTCAACCAGCCAGAGAG
* * *
30473545 GGTCCCGCTACCACAACCTTCCGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTACCACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* *
30473610 GCCAACCCACGAAACGGGCGTACAGGCACTCAGCCAGTCAGAGAG
66 GCCAACCCACGAAACGGGCGTACAGGCACTCAACCAGCCAGAGAG
30473655 G
1 G
30473656 TAGAATGCAT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
110 99 1.00
ACGTcount: A:0.25, C:0.33, G:0.27, T:0.15
Consensus pattern (110 bp):
GGTCCCGCTACCACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAACGGGCGTACAGGCACTCAACCAGCCAGAGAG
Found at i:30473766 original size:26 final size:26
Alignment explanation
Indices: 30473737--30473789 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30473727 CTGGTCCGAT
30473737 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
30473763 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30473789 C
1 C
30473790 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30474560 original size:159 final size:159
Alignment explanation
Indices: 30474131--30474569 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 159
30474121 AACTCCGTAT
* * *
30474131 GCTTAGACATGGAATGAACTCCATAAGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
30474196 CTGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCAGCGTGCTATCGATC
*** ** * ** *
30474261 TTGCTGCTGCAATCCTCGGTTCGGTCTGA
131 CCACTGCCACAACCCTCCATCCGGTCTGA
* * * * * *
30474290 TCTTAGAC-TAAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
30474354 GCCGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGACTCGGTCCCCCTCAGTGTGCTATCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCAGCGTGCTATCGAT
* *
30474419 CCCACTGCCATAACCCTCCATCCGG-CTGGC
130 CCCACTGCCACAACCCTCCATCCGGTCT-GA
* * * * * *
30474449 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAATGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
30474514 CC-AGCCGGAGAGGCAGAATGTGCAAGCCGAGGATTGGCCCGATCCCCCT--GCGTGCT
66 CCGA-CCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCAGCGTGCT
30474570 GCCGATCCTG
Statistics
Matches: 222, Mismatches: 54, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
157 6 0.03
158 4 0.02
159 211 0.95
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCAGCGTGCTATCGATC
CCACTGCCACAACCCTCCATCCGGTCTGA
Found at i:30481290 original size:26 final size:26
Alignment explanation
Indices: 30481252--30481304 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30481242 GGCTCAAAAT
*
30481252 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
*
30481278 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACACCATATG
30481304 C
1 C
30481305 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:30481699 original size:156 final size:157
Alignment explanation
Indices: 30481277--30481710 Score: 412
Period size: 158 Copynumber: 2.7 Consensus size: 157
30481267 AACACCGTAT
* * * *
30481277 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAAGCC-ATGAAACGAGCGTGCCGGCGCTC
1 GCTTAGAC-TGAGAATGAACTCCATATG--AAAGCCAA-CCAACGAAACGAGCATGCGGGCGCTC
* * * * * *
30481340 AGCCAGTCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCC-CTGCGAGCTATCGA
62 AGCCAGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGAGCCACCGA
** *
30481404 TCTTGCTACCGCAACCCTCGGTCCGGTCTGA
127 TCCCGCTACCACAACCCTCGGTCCGGTCTGA
* * * * * *
30481435 TCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGAGAATGAACTCCATATG-A-AAGCCAACCAACGAAACGAGCATGCGGGCGCTCAG
* * * * * * *
30481500 CCAGCCGAAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCCGCCGGTC
64 CCAGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGAGCCACCGATC
* *
30481565 CCGCTACCACAACCCTCGGTCTGG-CTGGG
129 CCGCTACCACAACCCTCGGTCCGGTCT-GA
* * * * *
30481594 GCTTAGACAT-AGAATGAACTCCCTATG-AAGCCAACCAACGGAATGGGCATGCGGGTGCTCAGC
1 GCTTAGAC-TGAGAATGAACTCCATATGAAAGCCAACCAACGAAACGAGCATGCGGGCGCTCAGC
* * *
30481657 CGGTCGAAGAGGCAGAATACGCAAGCTGCGGATCAGCCCGGTCACCCCTGCTGC
65 CAGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTC-CCCCT-CTGC
30481711 CACAACCTTC
Statistics
Matches: 226, Mismatches: 42, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
156 64 0.28
157 10 0.04
158 97 0.43
159 54 0.24
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.17
Consensus pattern (157 bp):
GCTTAGACTGAGAATGAACTCCATATGAAAGCCAACCAACGAAACGAGCATGCGGGCGCTCAGCC
AGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGAGCCACCGATCCC
GCTACCACAACCCTCGGTCCGGTCTGA
Found at i:30481763 original size:26 final size:26
Alignment explanation
Indices: 30481734--30481789 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
30481724 CCGGTCTGAT
* *
30481734 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGCATG
30481760 CTTAGACTAGGGATGAACTCCGCATG
1 CTTAGACTAGGGATGAACTCCGCATG
30481786 CTTA
1 CTTA
30481790 AGTCATCCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGCATG
Found at i:30481908 original size:12 final size:12
Alignment explanation
Indices: 30481891--30481918 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
30481881 TCCTTCTACG
30481891 TGCTACCGATCC
1 TGCTACCGATCC
30481903 TGCTACCGATCC
1 TGCTACCGATCC
30481915 TGCT
1 TGCT
30481919 GCCACAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.39, G:0.18, T:0.29
Consensus pattern (12 bp):
TGCTACCGATCC
Found at i:30482142 original size:26 final size:26
Alignment explanation
Indices: 30482113--30482165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30482103 CCGATCTGAT
* *
30482113 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30482139 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30482165 C
1 C
30482166 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Done.