Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 329 of 402
Found at i:30482501 original size:159 final size:157
Alignment explanation
Indices: 30482142--30482640 Score: 450
Period size: 158 Copynumber: 3.2 Consensus size: 157
30482132 CTGTATGCTT
* * ** *
30482142 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAAGGGCGCTCAACCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCC-G
* * * *
30482207 CCGGAGAGGTC-GAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTATCTATCCTGC
65 CCGGAGAGG-CAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCGATCCTGC
** * * *
30482271 TACCGTAACCCTCGATCCGATCTGATCTT
129 TACCACAACCCTCGATCCGAGCTGAGCTG
* * * * * *
30482300 AGAC-TAGGAAGGAATTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGAGCCA
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCC-
* * ** *
30482364 GCCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCTTTATGCTACCGGTCCTG
64 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACATGCTACCGATCCTG
* * * *
30482429 CTGCCACAGCCCTCGGTCCG-GCTGGGGCTG
128 CTACCACAACCCTCGATCCGAGCT-GAGCTG
* * * *
30482459 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGGTGTGCGGGCGCTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCG-
* * * * * ** *
30482524 TCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTACT
65 CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCGATCCTGCT
* * * * * * *
30482589 ATCGCAACCCTC-AGTCTGATCCGATCTT
130 ACCACAACCCTCGA-TCCGAGCTGAGCTG
30482617 AGAC-TGGGAATGAACTCCGTATGC
1 AGACAT-GGAATGAACTCCGTATGC
30482641 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 143 0.54
159 120 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGC
CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCGATCCTGCTA
CCACAACCCTCGATCCGAGCTGAGCTG
Found at i:30482643 original size:26 final size:26
Alignment explanation
Indices: 30482614--30482663 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
30482604 CTGATCCGAT
30482614 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30482640 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
30482664 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30483719 original size:26 final size:26
Alignment explanation
Indices: 30483678--30483730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30483668 CTGGTCCAAT
*
30483678 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30483704 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30483730 C
1 C
30483731 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30484096 original size:26 final size:26
Alignment explanation
Indices: 30484045--30484097 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30484035 CCAATCTGAT
***
30484045 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30484071 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30484097 C
1 C
30484098 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30484795 original size:26 final size:26
Alignment explanation
Indices: 30484757--30484809 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30484747 GGCACAAAAT
30484757 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30484783 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
30484809 C
1 C
30484810 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30486163 original size:26 final size:26
Alignment explanation
Indices: 30486127--30486179 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30486117 CCGGTTTGAT
30486127 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
* * *
30486153 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
30486179 C
1 C
30486180 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:30486236 original size:13 final size:13
Alignment explanation
Indices: 30486218--30486242 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30486208 AGTGCTCAAT
30486218 CAGTCGAAGAGGC
1 CAGTCGAAGAGGC
30486231 CAGTCGAAGAGG
1 CAGTCGAAGAGG
30486243 TAGAATGCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.40, T:0.08
Consensus pattern (13 bp):
CAGTCGAAGAGGC
Found at i:30486518 original size:26 final size:26
Alignment explanation
Indices: 30486482--30486531 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30486472 TCCATTCGAT
30486482 CTTAGACTGGGAATGAACTCCGTACA
1 CTTAGACTGGGAATGAACTCCGTACA
*
30486508 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
30486532 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACA
Found at i:30486716 original size:26 final size:26
Alignment explanation
Indices: 30486678--30486730 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30486668 CCGGTTTGAT
*
30486678 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30486704 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30486730 C
1 C
30486731 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30487473 original size:26 final size:26
Alignment explanation
Indices: 30487444--30487496 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
30487434 CCGGTCTGAT
*
30487444 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
* * * *
30487470 CTTATACTGGGGATAAACTTCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
30487496 C
1 C
30487497 CTAAGTCAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:30488151 original size:26 final size:26
Alignment explanation
Indices: 30488111--30488162 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30488101 CAATCTGATG
*
30488111 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAAATTCGTATGC
* *
30488137 TTAGATTGGGGATGAAATTCGTATGC
1 TTAGACTGGGAATGAAATTCGTATGC
30488163 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATTCGTATGC
Found at i:30488873 original size:26 final size:25
Alignment explanation
Indices: 30488844--30488894 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
30488834 GCTCAAACTT
30488844 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCC-TATGC
30488870 TTAGACATGGAATGAACTCCTATGC
1 TTAGACATGGAATGAACTCCTATGC
30488895 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
TTAGACATGGAATGAACTCCTATGC
Found at i:30490778 original size:26 final size:25
Alignment explanation
Indices: 30490729--30490779 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
30490719 CGGTTCGATG
* *
30490729 TTAGACTGGGAATGAACTCGTATGC
1 TTAGACTGGGAATGAAATCATATGC
*
30490754 TTAGACTGGGGATGAAATCCATATGC
1 TTAGACTGGGAATGAAAT-CATATGC
30490780 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (25 bp):
TTAGACTGGGAATGAAATCATATGC
Found at i:30491497 original size:26 final size:26
Alignment explanation
Indices: 30491459--30491512 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
30491449 GGCTCAAACT
*
30491459 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30491485 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30491511 CT
1 CT
30491513 AAGCCAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30491830 original size:26 final size:26
Alignment explanation
Indices: 30491801--30491851 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30491791 CGGTTAGATC
30491801 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
30491827 TTAGACTGGGTATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
30491852 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:30492047 original size:26 final size:26
Alignment explanation
Indices: 30492009--30492061 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30491999 CCGATCTGAT
*
30492009 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30492035 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30492061 C
1 C
30492062 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30492540 original size:26 final size:26
Alignment explanation
Indices: 30492511--30492563 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30492501 CCGATCTGAT
30492511 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
30492537 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
30492563 C
1 C
30492564 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:30493205 original size:185 final size:186
Alignment explanation
Indices: 30492866--30493207 Score: 411
Period size: 185 Copynumber: 1.8 Consensus size: 186
30492856 TTGTTGGTCC
* * * **
30492866 TACTGTCGATAACCCTCGGTCTAGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACAT
1 TACTGTCGACAACCCTCAGTCTAGTCAGATCTTAGACTAGGAATGAACTCCATATGCTTAGACAT
* * * * ** ** *
30492931 GGAATTAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTCAGTCGGTCGGAG
66 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGACGCTCAGTCGACCAGAG
*
30492996 AGGCAAAATGCATAAGCTGGGGATCGACCCGGTCCCCCCATGCGTGTTGTCGATCT
131 AGGCAAAATGCATAAGCCGGGGATCGACCCGGTCCCCCCATGCGTGTTGTCGATCT
* * * *
30493052 TACTGTCG-CAACCTTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCATGTGCTTAGAC-T
1 TACTGTCGACAACCCTCAGTCTAGTCAGATCTTAGACTAGGAATGAACTCCATATGCTTAGACAT
* * * *
30493115 GGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGACGCTCAG-CTGACCAG
66 -GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGACGCTCAGTC-GACCAG
** *
30493179 AGAGGCAGGATGCGTAAGCCGGGGATCGA
129 AGAGGCAAAATGCATAAGCCGGGGATCGA
30493208 ACGGGTGGTA
Statistics
Matches: 128, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
184 2 0.02
185 118 0.92
186 8 0.06
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (186 bp):
TACTGTCGACAACCCTCAGTCTAGTCAGATCTTAGACTAGGAATGAACTCCATATGCTTAGACAT
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGACGCTCAGTCGACCAGAG
AGGCAAAATGCATAAGCCGGGGATCGACCCGGTCCCCCCATGCGTGTTGTCGATCT
Found at i:30493841 original size:26 final size:26
Alignment explanation
Indices: 30493804--30493855 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30493794 GCTTAGAATT
30493804 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
30493830 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
30493856 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:30494131 original size:158 final size:158
Alignment explanation
Indices: 30493831--30494115 Score: 412
Period size: 158 Copynumber: 1.8 Consensus size: 158
30493821 TCCGTATGCT
* * * *
30493831 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGCACTCAGCCAG
1 TAGACATGGAATGAACGCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCACTCAGCCAG
* * * *
30493896 CCGGAGAGGCGGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCAC
66 CCGGAAAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCGATCCCAC
30493961 TACCACAACCCTCAATCTGGCTTGGGCA
131 TACCACAACCCTCAATCTGGCTTGGGCA
* * *
30493989 TAGACATGGAATGAACGCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACGCCCTATGCCTAAGCCAACCCACGAAACGAGCGTG-GGGCACTCAGCCA
* * *
30494054 GTCGGAAAGGCAGAATGCGCAAG-CTGGGGATCGGCCCAGTCCCCC-CTGCGTGCTGTCGATCC
65 GCCGGAAAGGCAGAATGCACAAGTC-GGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCGATCC
30494116 TGCTGTCGCA
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
158 63 0.57
159 48 0.43
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.16
Consensus pattern (158 bp):
TAGACATGGAATGAACGCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCACTCAGCCAG
CCGGAAAGGCAGAATGCACAAGTCGGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCGATCCCAC
TACCACAACCCTCAATCTGGCTTGGGCA
Found at i:30494181 original size:26 final size:26
Alignment explanation
Indices: 30494145--30494197 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30494135 CTGATCTGAT
30494145 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30494171 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30494197 C
1 C
30494198 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30495252 original size:26 final size:26
Alignment explanation
Indices: 30495211--30495263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30495201 CCGGTCTGAT
30495211 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30495237 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCATATG
30495263 C
1 C
30495264 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30496377 original size:159 final size:158
Alignment explanation
Indices: 30495969--30496409 Score: 484
Period size: 156 Copynumber: 2.8 Consensus size: 158
30495959 AGCCAACGCA
* * * * *
30495969 CAAAATGAGCAA-ACGGGGATCGGCCCGGTCCCCCTCTGTGTGCTG-CAATCTCGCTGCCACAAC
1 CAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
* *
30496032 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGA
66 CCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGA
* * *
30496097 GCGTACGGGCGCTAACCGGCCGAAGAGG
131 GCATACGGGCACTAACCAGCCGAAGAGG
* * * * * * * * *
30496125 CAAAATGCGTAAGTCGAGGACCGACCCGGT--CCCTCCGCGTGCTGTCGATCCTGTTGTCGCAAC
1 CAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
* ** * * *
30496188 CCTCGATCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAAC
66 CCTCGGTCCGAT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAC
*
30496251 GAGCATTCGGGCACTAAGCCAGCC-AGAGAGG
129 GAGCATACGGGCACTAA-CCAGCCGA-AGAGG
* * * *
30496282 CATAATGCGCAAG-CTGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAA
1 CAAAATGCGCAAGTC-GGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAA
* * *
30496346 CCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAAC
65 CCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAC
30496410 AGGTATGCGG
Statistics
Matches: 227, Mismatches: 47, Indels: 19
0.77 0.16 0.06
Matches are distributed among these distances:
155 13 0.06
156 89 0.39
157 46 0.20
158 1 0.00
159 77 0.34
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.19
Consensus pattern (158 bp):
CAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
CCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGA
GCATACGGGCACTAACCAGCCGAAGAGG
Found at i:30496421 original size:159 final size:158
Alignment explanation
Indices: 30495969--30496483 Score: 462
Period size: 159 Copynumber: 3.3 Consensus size: 158
30495959 AGCCAACGCA
* * * * *
30495969 CAAAATGAGCAA-ACGGGGATCGGCCCGGTCCCCCTCTGTGTGCTG-CAATCTCGCTGCCACAAC
1 CAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
* *
30496032 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGA
66 CCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAA-CA
* * *
30496097 GCGTA-CGGGCGCTAACCGGCCGAAGAGG
130 GAGTATCGGGCACTAACCAGCCGAAGAGG
* * * * * * * * *
30496125 CAAAATGCGTAAGTCGAGGACCGACCCGGT--CCCTCCGCGTGCTGTCGATCCTGTTGTCGCAAC
1 CAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
* ** * * *
30496188 CCTCGATCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAAC
66 CCTCGGTCCGAT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAC
*
30496251 -GAGCATTCGGGCACTAAGCCAGCC-AGAGAGG
129 AGAGTA-TCGGGCACTAA-CCAGCCGA-AGAGG
* * * *
30496282 CATAATGCGCAAG-CTGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAA
1 CAAAATGCGCAAGTC-GGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAA
* * *
30496346 CCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACA
65 CCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACA
* * ** *
30496411 G-GTATGCGGGCGCTCATCTGGCCAAAG-GG
130 GAGTAT-CGGGCACT-AACCAGCCGAAGAGG
* * * ** *
30496440 TAGAATGCGCAAGCCGGGGATCGGCTTGGTCCCCC-CTGTGTGCT
1 CAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCT
30496484 ACCAATCCTA
Statistics
Matches: 283, Mismatches: 58, Indels: 35
0.75 0.15 0.09
Matches are distributed among these distances:
154 3 0.01
155 13 0.05
156 84 0.30
157 54 0.19
158 32 0.11
159 93 0.33
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
CCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACAG
AGTATCGGGCACTAACCAGCCGAAGAGG
Found at i:30496562 original size:26 final size:26
Alignment explanation
Indices: 30496533--30496585 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30496523 CCGGTCTGAT
30496533 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
30496559 CTTAGACATTGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30496585 C
1 C
30496586 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30497063 original size:26 final size:26
Alignment explanation
Indices: 30497034--30497086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30497024 CCAATCTGAT
*
30497034 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
30497060 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
30497086 C
1 C
30497087 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:30497237 original size:513 final size:511
Alignment explanation
Indices: 30496048--30497184 Score: 1131
Period size: 513 Copynumber: 2.2 Consensus size: 511
30496038 TCCGACTGGG
* * * *
30496048 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATA-AAATGAGCGTACGGGCGCT-A
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA-AGAAACGAGCATACGGGCACTCA
* * * ** * * *
30496111 ACCGGCC-GAAGAGGCAAAATGCGTAA-GTC-GAGGACC-GACCCGGT-CCCTCC-GCGTGCTGT
65 ACCGACCAGAA-ACGCAGAATGCACAATG-CAG-GGACCAG-CCCGATCCCCCCCTGCGTACTGT
* * ** *
30496170 CGATCCTGTTG-TCGCAACCCTC-GATCC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGC
126 CAATCCTGCTGCT-GCAACCCTCAG-TCCAG-TCCAAGCTTAGACTGGGAATGAACTCCGTATGC
* * *
30496232 CTAAGTCAACCCATTAAACGAGCATTCGGGCACTAAGCCAGCCAGAGAGGCATAATGCGCAAGCT
188 CTAAGTCAACCCATGAAACGAGCATTCGGGCACTAAGCCAGCCAGAAAGGCATAATGCGCAAGCC
* * ** * *
30496297 GGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGGTTGG
253 GAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCGGCTGG
* * *
30496362 GGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACAGGTATGCGGGCGCTCA
318 GGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCA
* * ** * *
30496427 TCTGGCCAAAGGGTAGAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCCTGTGTGCTACCAATCC
383 GCCGGCCAAAGGACAGAATGCGCAAGCCGGGGATCGGCTTCGTCCCCCCTGTGCGCTACCAATCC
* * * * ** *
30496492 TACTGCTGGTCCTACTATCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
448 TAATCCTGG-CCTACCATCG-AACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAAATCCGTA
30496557 T
511 T
* * * * * *
30496558 GCTTAGACATTGAATGAACTTCGTATGCCTAAGCCAACTCAAGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCATACGGGCACTCAA
* * * * * * * * *
30496623 CTGGCCAGAGAGGTAGAATGCACAATGCGGGGACCGGCCCGGTCCCCCCCTGCGTGCTGTCAATC
66 CCGACCAGAAACGCAGAATGCACAATGCAGGGACCAGCCCGATCCCCCCCTGCGTACTGTCAATC
* *
30496688 CTGCTGCTGCAACCTTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
131 CTGCTGCTGCAACCCTCAGTCCAGTCCAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * *
30496753 ATGCATGAAACGAGCATTCGGGCATTGAGCCAGCC-GAAAAGGCATAATGTGCAAGCCGAGGATC
196 ACCCATGAAACGAGCATTCGGGCACTAAGCCAGCCAG-AAAGGCATAATGCGCAAGCCGAGGATC
* * * * *
30496817 GGCCCGGTCTCCCTCTGCGTGCTACCAGTCCCGCTGCCACAACCGTTGTTCCGGCTGGGGCTTAG
260 GGCCCGGTCCCCCTCTGCGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAG
* * * * *
30496882 ACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCATGCGGGTGTTCAGCCGATC
325 ACATGAAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCG-GC
* **
30496947 GGAAA-GACAGAATGCGCAAGCCGGGGATCGGC-TCGT-CCCCC-GTGCGC-A-CTGT-C-AATC
389 -CAAAGGACAGAATGCGCAAGCCGGGGATCGGCTTCGTCCCCCCTGTGCGCTACCAATCCTAATC
30497004 CT-G-CTACCA-C-AACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAAATCCGTAT
453 CTGGCCTACCATCGAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAAATCCGTAT
* * * * **
30497059 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCATACGGGCACTCA
* * * ** **
30497123 ACCGA-CTGAAAACGCATAATGCGCAA-GCTAGGGATTAGCCCGATCCCCCTTTGCGTACTGTC
65 ACCGACCAG-AAACGCAGAATGCACAATGC-AGGGACCAGCCCGATCCCCCCCTGCGTACTGTC
30497185 GATCTCGCTG
Statistics
Matches: 520, Mismatches: 90, Indels: 43
0.80 0.14 0.07
Matches are distributed among these distances:
500 5 0.01
501 131 0.25
503 1 0.00
504 5 0.01
506 1 0.00
507 4 0.01
508 1 0.00
509 3 0.01
510 55 0.11
511 34 0.07
512 16 0.03
513 232 0.45
514 29 0.06
515 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (511 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCATACGGGCACTCAA
CCGACCAGAAACGCAGAATGCACAATGCAGGGACCAGCCCGATCCCCCCCTGCGTACTGTCAATC
CTGCTGCTGCAACCCTCAGTCCAGTCCAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCATGAAACGAGCATTCGGGCACTAAGCCAGCCAGAAAGGCATAATGCGCAAGCCGAGGATCG
GCCCGGTCCCCCTCTGCGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA
CATGAAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCGGCCA
AAGGACAGAATGCGCAAGCCGGGGATCGGCTTCGTCCCCCCTGTGCGCTACCAATCCTAATCCTG
GCCTACCATCGAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAAATCCGTAT
Found at i:30497451 original size:26 final size:26
Alignment explanation
Indices: 30497400--30497451 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
30497390 CCAGTTCGAT
* *
30497400 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCATATG
*
30497426 CTTAGACAT-GGAATGTACGCCATATG
1 CTTAGAC-TGGGAATGAACGCCATATG
30497452 TCGAAGCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCATATG
Found at i:30498205 original size:175 final size:175
Alignment explanation
Indices: 30497913--30498240 Score: 424
Period size: 175 Copynumber: 1.9 Consensus size: 175
30497903 TCCAATCTGA
* * ** *
30497913 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGATTAGACATGGAACAAACTCCGTAAGCCTAAGCCAACC
* ** * * * *
30497978 CATGAAATGAGCGTGCGGGAGCTTAGTCAGCCCGAGAGGCAAAATGCACAAGCCAGGGATCGGCT
66 CACGAAACAAGCGTGCGAGAGCTCAGTCAGCCCGAGAGGCAAAATACACAAGCCAGGGATCGGCC
*
30498043 TGGTCCCCCTCTGCATGCTGTCAATCCTATTGTCGTGGCTCAAAC
131 TGATCCCCCTCTGCATGCTGTCAATCCTATTGTCGTGGCTCAAAC
*
30498088 TCTTAGACTGGGAATGAACTCTGTATGATTAGACATGGAACAAACTCCGTAAGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGATTAGACATGGAACAAACTCCGTAAGCCTAAGCCAACC
* * * * * ** *
30498153 CACGAAACAAGCGTGCGAGCGCTCAG-CAGGTCGGAGAGGTAGAATACACAAGCTGGGGATTGGC
66 CACGAAACAAGCGTGCGAGAGCTCAGTCA-GCCCGAGAGGCAAAATACACAAGCCAGGGATCGGC
* *
30498217 CTGATCTCCCTCTGCATTCTGTCA
130 CTGATCCCCCTCTGCATGCTGTCA
30498241 GCCCCGCTGC
Statistics
Matches: 128, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
174 2 0.02
175 126 0.98
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (175 bp):
TCTTAGACTGGGAATGAACTCCGTATGATTAGACATGGAACAAACTCCGTAAGCCTAAGCCAACC
CACGAAACAAGCGTGCGAGAGCTCAGTCAGCCCGAGAGGCAAAATACACAAGCCAGGGATCGGCC
TGATCCCCCTCTGCATGCTGTCAATCCTATTGTCGTGGCTCAAAC
Found at i:30498412 original size:26 final size:26
Alignment explanation
Indices: 30498383--30498433 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30498373 AGTTTGATCA
* *
30498383 TAGACTTGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
30498409 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
30498434 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:30499289 original size:26 final size:26
Alignment explanation
Indices: 30499251--30499303 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30499241 CCGGTCCGAT
30499251 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30499277 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
30499303 C
1 C
30499304 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30499631 original size:158 final size:157
Alignment explanation
Indices: 30499276--30499777 Score: 374
Period size: 158 Copynumber: 3.2 Consensus size: 157
30499266 AACTTCGTAT
*
30499276 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * * * *
30499341 CAGGCCGAAGAGGTAGAATGCACAAGCCGGGGACTGGCTCGATCCCCCCTGCGTGCTGTCGATCC
66 CAGACCGAAGAGGCAGAATACACAAGCCGAGGACTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *
30499406 TGCTGCCGCAACCCTCGGTCTGATCCTA
131 CGCTGCCACAACCCTCGGTCTGA-CCTA
* * * * * ** * ** * *
30499434 TCTTAGA-ATGGGAATGAAC-TCTTTTTGTCAAAGTTAACCCATGAAATGAGCGTTTGGGTGCTG
1 GCTTAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * * **
30499497 AGCCGATCGAAGAGGCATAATACGTAAGCCGAGGA-TCGGCCCGATCCCCCTCTGCGTGCTGTCG
64 AACAGACCGAAGAGGCAGAATACACAAGCCGAGGACT-GGCCCGATCCCCC-CTGCGTGCTGTCG
* * * *
30499561 GTCCCGCTGCCACATCCTTCGGT-TCG-GCTA
127 ATCCCGCTGCCACAACCCTCGGTCT-GACCTA
* *
30499591 GGGTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCA
1 -GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * *** * * *
30499656 GTC-G-GCTAGAGAGGTAGAATGCACAAGCCGAGGA-TCGATTCGGTCCCTCCTGCGTGCTGTCA
65 -ACAGACCGA-AGAGGCAGAATACACAAGCCGAGGACT-GGCCCGATCCCCCCTGCGTGCTGTCG
* * * * **
30499718 ATCCTGCTGTCGCAACCCTTGGTCTGGTCTGA
127 ATCCCGCTGCCACAACCCTCGGTCTGACCT-A
* *
30499750 TCTTAGAC-TGGGAATGAACTTCATATGC
1 GCTTAGACAT-GGAATGAACTTCGTATGC
30499778 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 69, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
157 40 0.15
158 183 0.70
159 38 0.15
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
CAGACCGAAGAGGCAGAATACACAAGCCGAGGACTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCTGACCTA
Found at i:30499802 original size:26 final size:26
Alignment explanation
Indices: 30499751--30499803 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30499741 CTGGTCTGAT
*
30499751 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30499777 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30499803 C
1 C
30499804 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30500154 original size:26 final size:26
Alignment explanation
Indices: 30500125--30500177 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30500115 CCAATCTGAT
* *
30500125 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCGGTATG
*
30500151 CTTAGACAGGGAATGCACTCGGTATG
1 CTTAGACAGGGAATGAACTCGGTATG
30500177 C
1 C
30500178 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCGGTATG
Found at i:30500505 original size:159 final size:159
Alignment explanation
Indices: 30500150--30500613 Score: 521
Period size: 159 Copynumber: 2.9 Consensus size: 159
30500140 AACTCTGTAT
* *
30500150 GCTTAGACAG-GGAATGCACTCGGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
1 GCTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
* *
30500214 ACCGATC-AGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGA-CCGCCCCTGCATGCTGT-AG
65 ACCGATCGA-AGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCC-CCCCTGCGTGCTGTCAG
* * * * *
30500276 ATCCTACTACCGCAACCCTCAGTCCAGTTTGA
128 ATCCTGCTGCCGCAACCCTCGGTCCAGCTGGA
* * * * * * *
30500308 TCTTAGAC-TAGGACTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCATTGA
1 GCTTAGACGT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
* * * * *
30500372 GCCGGTCGAAAAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCAGA
65 ACCGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCAGA
*
30500437 --CTCGCTGCCGCAACCCTCGGTCCAGCTGGG
129 TCCT-GCTGCCGCAACCCTCGGTCCAGCTGGA
* * * * **
30500467 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAA
1 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
* * * * *
30500532 CCGATTGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCT-ACCGATC
66 CCGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAGATC
30500596 CTGCTGCCGCAACCCTCG
131 CTGCTGCCGCAACCCTCG
30500614 TTTCGATTCG
Statistics
Matches: 251, Mismatches: 45, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 117 0.47
159 127 0.51
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
CCGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAGATC
CTGCTGCCGCAACCCTCGGTCCAGCTGGA
Found at i:30500662 original size:26 final size:26
Alignment explanation
Indices: 30500626--30500678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30500616 TCGATTCGAT
30500626 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30500652 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30500678 C
1 C
30500679 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30500806 original size:12 final size:12
Alignment explanation
Indices: 30500791--30500835 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
30500781 GTGCTGTCGA
30500791 TCCTGCTGCTGG
1 TCCTGCTGCTGG
*
30500803 TCCTGCTG-TCGA
1 TCCTGCTGCT-GG
*
30500815 TCTTGCTGCTGG
1 TCCTGCTGCTGG
30500827 TCCTGCTGC
1 TCCTGCTGC
30500836 CGTAACCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
11 1 0.04
12 25 0.93
13 1 0.04
ACGTcount: A:0.02, C:0.33, G:0.29, T:0.36
Consensus pattern (12 bp):
TCCTGCTGCTGG
Found at i:30500809 original size:24 final size:24
Alignment explanation
Indices: 30500782--30500834 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
30500772 CCCCCCTGTG
30500782 TGCTGTCGATCCTGCTGCTGGTCC
1 TGCTGTCGATCCTGCTGCTGGTCC
*
30500806 TGCTGTCGATCTTGCTGCTGGTCC
1 TGCTGTCGATCCTGCTGCTGGTCC
30500830 TGCTG
1 TGCTG
30500835 CCGTAACCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.04, C:0.30, G:0.30, T:0.36
Consensus pattern (24 bp):
TGCTGTCGATCCTGCTGCTGGTCC
Found at i:30500888 original size:26 final size:26
Alignment explanation
Indices: 30500859--30500911 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30500849 CCGGTCTGAT
30500859 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30500885 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30500911 C
1 C
30500912 CTAAGCCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30501388 original size:26 final size:26
Alignment explanation
Indices: 30501359--30501411 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30501349 CTGGTCCAAT
30501359 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
30501385 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30501411 C
1 C
30501412 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30502007 original size:11 final size:11
Alignment explanation
Indices: 30501991--30502023 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
30501981 CGGTTAGGCT
30501991 CTCCGACGATG
1 CTCCGACGATG
*
30502002 CTCCGACGACG
1 CTCCGACGATG
30502013 CTCCGACGATG
1 CTCCGACGATG
30502024 GTGCCCCAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.39, G:0.27, T:0.15
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:30502131 original size:26 final size:26
Alignment explanation
Indices: 30502093--30502145 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30502083 GGCTCAAGCT
30502093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30502119 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30502145 C
1 C
30502146 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30502439 original size:158 final size:158
Alignment explanation
Indices: 30502118--30502455 Score: 394
Period size: 158 Copynumber: 2.1 Consensus size: 158
30502108 AACTCCGTAT
*
30502118 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * ** * * *
30502183 CCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGAACCGATCCCCCTCTGCGTGCTGCCAGTC
66 CCGGCCGGAGAGGCAGAAAACGCAAGCCAGGGACCGAACCGATCCCCCTCTGCATGCTGCCAATC
* * * * *
30502248 CCGTTGCCCCAACCCTTGGTCCGTTGGG
131 CCGCTGCCCCAACCCTCGATCCGTTAGA
* * * * *
30502276 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * *
30502341 CCGGCCGGAGAGGCAGAAAACGCAAG-CTGGGAACCGACCCGGTCCCCC-CTGCATGCTGCCAAT
66 CCGGCCGGAGAGGCAGAAAACGCAAGCCAGGG-ACCGAACCGATCCCCCTCTGCATGCTGCCAAT
* * *
30502404 CCTGCTGCCGCAACCCTCGATCTGGTTAGA
130 CCCGCTGCCCCAACCCTCGATC-CGTTAGA
* *
30502434 TCTTAGA-TTGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
30502456 ATGTGCTTAG
Statistics
Matches: 151, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 35 0.23
158 116 0.77
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
CCGGCCGGAGAGGCAGAAAACGCAAGCCAGGGACCGAACCGATCCCCCTCTGCATGCTGCCAATC
CCGCTGCCCCAACCCTCGATCCGTTAGA
Found at i:30502683 original size:26 final size:26
Alignment explanation
Indices: 30502645--30502697 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30502635 CTGGTCCGAT
30502645 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
30502671 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
30502697 C
1 C
30502698 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30503256 original size:317 final size:316
Alignment explanation
Indices: 30502670--30503271 Score: 721
Period size: 317 Copynumber: 1.9 Consensus size: 316
30502660 AACTCCATAT
* * *
30502670 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGGAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
30502735 CAGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCGGCCCGATCCCCTCCTGCGTGCTGTCAATC
66 CAGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACAGGCCAGATCCCCTCCTGCGTGCTGTCAATC
** * * * * *
30502800 CAAGTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTACGTCA
131 C-AGTGCCACAACCCTCAGTCCGGTCCAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * *
30502865 ACCCACGAAACGAACGTTCGGGTGTTGAGCCGGTCGGAGAGGCATAACGCGCAAGATGGGGATTG
195 ACCCACAAAACGAACGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAACGCGCAAGACGGGGATCG
* *
30502930 GCTCGATCCCCCTCTGCATGCTACCGGTCTCGCTGCCACAACCCTCGGTCCAGCTAGG
260 ACCCGATCCCCCT-TGCATGCTACCGGTCTCGCTGCCACAACCCTCGGTCCAGCTAGG
* *
30502988 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * **
30503053 C-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGTCCAG-TCCCC-CTCTGCGTGTTGTCGG
66 CAGGCCAGAGAGGCAGAATGCGCAAGCCAGGGA-CAGGCCAGATCCCCTC-CTGCGTGCTGTCAA
*** *
30503115 TCTC-GCTGCCACAACCCTCAGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCTTA
129 TC-CAG-TGCCACAACCCTCAGTCCGGTC-CAAGCTTAGAC-TGGGAATGAACTCCCTATGCCTA
* *** * *
30503177 AGCCAACCCACAAAATGGGTGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGG
190 AGCCAACCCACAAAACGAACGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAACGCGCAAGACGGG
*
30503242 GATCGACCCGATCCCCCTTGCGTGCTACCG
255 GATCGACCCGATCCCCCTTGCATGCTACCG
30503272 ATCCTGCTGC
Statistics
Matches: 237, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
316 14 0.06
317 155 0.65
318 68 0.29
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CAGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACAGGCCAGATCCCCTCCTGCGTGCTGTCAATC
CAGTGCCACAACCCTCAGTCCGGTCCAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACGAACGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAACGCGCAAGACGGGGATCGA
CCCGATCCCCCTTGCATGCTACCGGTCTCGCTGCCACAACCCTCGGTCCAGCTAGG
Found at i:30503281 original size:158 final size:159
Alignment explanation
Indices: 30502670--30503295 Score: 649
Period size: 159 Copynumber: 3.9 Consensus size: 159
30502660 AACTCCATAT
* * * *
30502670 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGGAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
30502735 CAGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCGGCCCGAT-CCCCTCCTGCGTGCTGTCAAT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT-CTGCGTGCTACCGAT
** * * *
30502799 C-CAAG-TGCTGCAACCCTCGGTCCGGTCCA-A
130 CTC--GCTGCCACAACCCTCAGTCCGG-CTAGG
* * * * * * * * *
30502829 TCTTAGAC-TGGGAATGAACTCCGTATGCCTACGTCAACCCACGAAACGAACGTTCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * * * *
30502893 GCCGGTCGGAGAGGCATAACGCGCAAGATGGGGATTGGCTCGATCCCCCTCTGCATGCTACCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGAT
* *
30502958 CTCGCTGCCACAACCCTCGGTCCAGCTAGG
130 CTCGCTGCCACAACCCTCAGTCCGGCTAGG
*
30502988 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
30503053 -CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGTCC-AGTCCCCCTCTGCGTGTTGTCGGT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCGTGCTACCGAT
*
30503116 CTCGCTGCCACAACCCTCAGTCCGGCTGGG
130 CTCGCTGCCACAACCCTCAGTCCGGCTAGG
* * * * * *
30503146 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAATGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
30503211 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCT-TGCGTGCTACCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
* *
30503275 -CTGCTGCCGCGACCCTCAGTC
131 TC-GCTGCCACAACCCTCAGTC
30503296 TGATTAGATC
Statistics
Matches: 386, Mismatches: 71, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 167 0.43
159 209 0.54
160 8 0.02
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
TCGCTGCCACAACCCTCAGTCCGGCTAGG
Found at i:30503842 original size:159 final size:158
Alignment explanation
Indices: 30503540--30504139 Score: 430
Period size: 159 Copynumber: 3.8 Consensus size: 158
30503530 AACTCCGTAT
* * * * * *
30503540 GCTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGACGCTCAG
* * * * * * * * ** *
30503605 TCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGA-CTG-ACCCAGTC-CCATCCTATGTGCTGTC-
64 TCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCA-CGA-TCACCCT-CTGCGTGCTGCCA
* * * * * *
30503666 GATCCTGCTACCGTAACCCTCGATCCGATCT-GA
126 G-TCCCGTTGCCATAACCCTCGGTCCGATCTGGG
* * * * * *
30503699 TCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGCCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGACGCTCAG
* * * * * **
30503764 TCGATCGGAGAGGCATAATGCGTGAGTCGAGGAT-TGACACGGTC-CCCTTCTGTGTTTTGCCAG
64 TCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCAG-CACGATCACCC-TCTGCGTGCTGCCAG
* *
30503827 TCCTGTTGCCATAACCCTCGGTCC-AGCTGGG
127 TCCCGTTGCCATAACCCTCGGTCCGATCTGGG
* * * * ** *
30503858 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACGCACGAAACGTGCGTGCGGGTGCTTAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGACGCTCAG
* * * * **
30503923 CCGATCAGAGA-GCTAGAATGCGAAAGTCGAGGATCAGCCCGATCACCCTCTGCGTGCTGCTGGT
64 TCGATCGGAGAGGC-AGAATGCGTAAGTCGAGGATCAGCACGATCACCCTCTGCGTGCTGCCAGT
* *
30503987 CCCGTTGCCACAACCCTAGGTCCGAT-TGGG
128 CCCGTTGCCATAACCCTCGGTCCGATCTGGG
* * *
30504017 GCTTAGACTTGGAATGAACTCCGTATTCCTAAGCGAACCCATGAAACGGGCGTGCGGACACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGACGCTCAG
* * * * * *
30504082 TCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTC-CCCCCTGCGTGCTG
64 TCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCACGATCACCCTCTGCGTGCTG
30504140 TTGATCCTGC
Statistics
Matches: 347, Mismatches: 80, Indels: 29
0.76 0.18 0.06
Matches are distributed among these distances:
158 20 0.06
159 315 0.91
160 11 0.03
161 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGACGCTCAGTC
GATCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCACGATCACCCTCTGCGTGCTGCCAGTCCC
GTTGCCATAACCCTCGGTCCGATCTGGG
Found at i:30504341 original size:870 final size:860
Alignment explanation
Indices: 30502118--30504582 Score: 2711
Period size: 870 Copynumber: 2.8 Consensus size: 860
30502108 AACTCCGTAT
* * *
30502118 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
30502183 CCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATC-GAACCGATCCCCCTCTGCGTGCTGCCAGT
66 CCGGTCGGAGAGCTAGAATGCGCAAGCGA-GGATCAG-ACCGATCCCCCTCTGCGTGCTGCTGGT
* * *
30502247 CCCGTTGCCCCAACCCTTGGTCCGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCA
129 CCCGTTGCCACAACCCTAGGTCCGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** * * *
30502312 ACCCATGAAATGGGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAAAACGCAAGCTGGGAACCG
194 ACCCATGAAATGGGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* *
30502377 ACCCGGTCCCCCCTGCATGCTGCCAATCCTGCTGCCGCAACCCTCGATCTGGTTAGATCTTAGAT
259 ACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG-TCTGGTTAGATCTTAGAT
* * * * * * * *
30502442 TGGGAATGAACTCCATGTGCTTAGACTGGGGAAGAACTTTGTATGCCTAACTCAGCCCACGTAAC
323 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAAGAAAC
* * * * * * * *
30502507 GACCATGCGGGTGCTCAGCCGGCCAGAGAGGTCGGCCAAAGAGGCAGAATGCGCAAGCTGGGGAT
388 GAGCGTGCGGGCGCTCAGCC-GCCGGAGAGGTCGGTCAGAGAGGCAGAATGCACAAGC-CGGGAT
* * * * *
30502572 CAGCTCGATCCCGCCCTGCGTGCTAT-C-GATCCTACTACTGGTCCTACTATCACAACCCTCGAT
451 CAGCCCGGTCTC-CCCTGCGTG--ATGCAGATCCTACTGCTGGTCCTACTGT--CAACCCTCGAT
* * * * *
30502635 CTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCT
511 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTTTGCCT
* * *
30502700 AATCCAACCCACGGAACGAGCGTACGGGCGCTCAGCAGGCCAGAGAGGCAGAATGCGCAAGCCAG
576 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGAGGCAGAATGCGCAAGCCAG
* * * * * *
30502765 GGACCGGCCCGATCCCCTCCTGCGTGCTGTCAATCCAAG-TGCTGCAACCCTCGGTCCGGTCCAA
640 GGACTGGCCCG-T-CCCTCCTGCGTGCTGTCGATCC-TGCTGCTGTAACCCTCGATCCGATCCAA
* ** *
30502829 TCTTAGACTGGGAATGAACTCCGTATGCCTACGTCAACCCACGAAACGAACGTTCGGGTGTTGAG
702 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGCCGCTGAG
* * * * *
30502894 CCGGTCGGAGAGGCATAACGCGCAAGATGGGGATTGGCTCGATCCCCCTCTGCATGCTACCGGTC
767 CCGATCGGAGAGGCATAACGCGCAAGATGAGGATTGACACGATCCCCCTCTGCATGCTACCAGTC
30502959 TCGCTGCCACAACCCTCGGTCCAGCTAGG
832 TCGCTGCCACAACCCTCGGTCCAGCTAGG
* *
30502988 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
30503053 -CGGCCGGAGAGGC-AGAATGCGCAAGCCGGGGATCAGTCC-AGTCCCCCTCTGCGTGTTG-TCG
66 CCGGTCGGAGA-GCTAGAATGCGCAAG-CGAGGATCAGACCGA-TCCCCCTCTGCGTGCTGCT-G
* * * *
30503114 GTCTCGCTGCCACAACCCTCA-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAA
127 GTCCCGTTGCCACAACCCT-AGGTCC-GTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
** *
30503178 GCCAACCCACAAAATGGGTGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGG
190 GCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGG
* * * * *
30503243 ATCGACCCGATCCCCCTTGCGTGCTACCGATCCTGCTGCCGCGACCCTCAGTCTGATTAGATCTT
255 ATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-GTCTGGTTAGATCTT
* * * *
30503308 AGATTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACACATA
319 AGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCA-A
* * * * * * * *
30503373 -AAATGAGCGTACGGGGGCTCAGCCGACCGGATAGGTCGATCGGAGAGGCAAAATGCACGAGCCG
383 GAAACGAGCGTGCGGGCGCTCAGCCG-CCGGAGAGGTCGGTCAGAGAGGCAGAATGCACAAGCCG
** *
30503437 AGGATC-GACCTAGT-TGCCCCTTGCGTGCTGCAGATCCTACTGCTGGTCCTACTGCTGCAACCC
447 -GGATCAG-CCCGGTCT-CCCC-TGCGTGATGCAGATCCTACTGCTGGTCCTACTG-T-CAACCC
*
30503500 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTT
506 TCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTT
* * *
30503565 TGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGTCAGAGAGGCAGAATGCGCAA
571 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGAGGCAGAATGCGCAA
* * ** * *
30503630 GCCGGGGACTGACCCAGTCCCATCCTATGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCGAT
635 GCCAGGGACTGGCCC-GTCCC-TCCTGCGTGCTGTCGATCCTGCTGCTGTAACCCTCGATCCGAT
** * * **
30503695 CTGATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGCCGC
698 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGCCGC
* * ** * * ** ** *
30503760 TGAGTCGATCGGAGAGGCATAATGCGTGAG-TCGAGGATTGACACGGTCCCCTTCTGTGTTTTGC
763 TGAGCCGATCGGAGAGGCATAACGCGCAAGAT-GAGGATTGACACGATCCCCCTCTGCATGCTAC
* * *
30503824 CAGTC-CTGTTGCCATAACCCTCGGTCCAGCTGGG
827 CAGTCTC-GCTGCCACAACCCTCGGTCCAGCTAGG
* * * * *
30503858 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACGCACGAAACGTGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
30503923 CCGATCAGAGAGCTAGAATGCGAAAGTCGAGGATCAGCCCGATCACCCTCTGCGTGCTGCTGGTC
66 CCGGTCGGAGAGCTAGAATGCGCAAG-CGAGGATCAGACCGATCCCCCTCTGCGTGCTGCTGGTC
* * * *
30503988 CCGTTGCCACAACCCTAGGTCCGATTGGGGCTTAGACTTGGAATGAACTCCGTATTCCTAAGCGA
130 CCGTTGCCACAACCCTAGGTCCG-TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * ** *
30504053 ACCCATGAAACGGGCGTGCGGACACTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
194 ACCCATGAAATGGGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* * ** ** * *
30504118 GCTCGGTCCCCCCTGCGTGCTGTTGATCCTGCTATCGCAACCCTCGGT-TCGGTTCGATCTGAGA
259 ACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-GTCT-GGTTAGATCTTAGA
*
30504182 TTGGGAGTGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAAGAAA
322 TTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAAGAAA
* * * * * * * * *
30504247 CAAGCGTGTGGCCACTCAACCAGCTGGAGAGGCCGGTCAGAGAGGTAGAATGCATAAGCCAGGGA
387 CGAGCGTGCGGGCGCTCAGCC-GCCGGAGAGGTCGGTCAGAGAGGCAGAATGCACAAGCC-GGGA
* *
30504312 TCAGCCCGGTCTCTCCTGCGTGATGCAGAT-C--CTGCT-G---T-C-GT-AACCCTCGATCCAG
450 TCAGCCCGGTCTCCCCTGCGTGATGCAGATCCTACTGCTGGTCCTACTGTCAACCCTCGATCCGG
*
30504367 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTG-TTGCCTAAGC
515 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTTTGCCTAAGC
** * * * * * *
30504431 CAACCCATAAAATGAGCGTGCGGACGCTCAGCCGGCCAGAAAGGTAGAATGCACAGGCCAGGGA-
580 CAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGAGGCAGAATGCGCAAGCCAGGGAC
* * *
30504495 TCGGTTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGTAACCCTC-AGTCC-AGTCCAATCT
644 T-GG-CCCGTCCCTCCTGCGTGCTGTCGATCCTGCTGCTGTAACCCTCGA-TCCGA-TCCAATCT
*
30504558 TAGACTGGGAATGAACTCCATATGC
705 TAGACTGGGAATGAACTCCGTATGC
30504583 TTAGATTGGG
Statistics
Matches: 1330, Mismatches: 226, Indels: 92
0.81 0.14 0.06
Matches are distributed among these distances:
855 2 0.00
856 63 0.05
857 67 0.05
858 66 0.05
860 1 0.00
861 1 0.00
862 1 0.00
863 1 0.00
866 1 0.00
867 5 0.00
868 2 0.00
869 78 0.06
870 718 0.54
871 318 0.24
872 6 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (860 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGCTAGAATGCGCAAGCGAGGATCAGACCGATCCCCCTCTGCGTGCTGCTGGTCC
CGTTGCCACAACCCTAGGTCCGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAATGGGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
CCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGTCTGGTTAGATCTTAGATTGG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAG
CGTGCGGGCGCTCAGCCGCCGGAGAGGTCGGTCAGAGAGGCAGAATGCACAAGCCGGGATCAGCC
CGGTCTCCCCTGCGTGATGCAGATCCTACTGCTGGTCCTACTGTCAACCCTCGATCCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTTTGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACTGGCCCG
TCCCTCCTGCGTGCTGTCGATCCTGCTGCTGTAACCCTCGATCCGATCCAATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGCCGCTGAGCCGATCGGAGAGGC
ATAACGCGCAAGATGAGGATTGACACGATCCCCCTCTGCATGCTACCAGTCTCGCTGCCACAACC
CTCGGTCCAGCTAGG
Found at i:30504585 original size:26 final size:26
Alignment explanation
Indices: 30504556--30504608 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30504546 CCAGTCCAAT
30504556 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
30504582 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30504608 C
1 C
30504609 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30504600 original size:183 final size:184
Alignment explanation
Indices: 30504278--30504626 Score: 465
Period size: 183 Copynumber: 1.9 Consensus size: 184
30504268 AGCTGGAGAG
* * * * *
30504278 GCCGGTCAGAGAGGTAGAATGCATAAGCCAGGGATCAGCCCGGTCTCTCCTGCGTGATGCAGATC
1 GCCGGCCAGAAAGGTAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGATGCAGATC
** *
30504343 CTGCTGTCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
66 CTGCTGTCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT
*
30504408 GGAATGAACTCTGT-TGCCTAAGCCAACCCATAAAATGAGCGTGCGGACGCTCA
131 GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGACGCTCA
* * ** *
30504461 GCCGGCCAGAAAGGTAGAATGCACAGGCCAGGGATCGGTTCGGTCCCCCCTGCGTGCTGTC-GAT
1 GCCGGCCAGAAAGGTAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGATG-CAGAT
30504525 CCTGCTG-CTGTAACCCTC-AGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGA
65 CCTGCTGTC-GTAACCCTCGA-TCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * *
30504588 -TTGGGGATGAACTCCGTATGCCTAGGTCAACCCATAAAA
128 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAA
30504627 CAAGCGTCGG
Statistics
Matches: 143, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
182 3 0.02
183 120 0.84
184 20 0.14
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
GCCGGCCAGAAAGGTAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGATGCAGATC
CTGCTGTCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT
GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGACGCTCA
Found at i:30504680 original size:183 final size:183
Alignment explanation
Indices: 30504284--30504680 Score: 437
Period size: 183 Copynumber: 2.2 Consensus size: 183
30504274 AGAGGCCGGT
* * * * ** * *
30504284 CAGAGAGGTAGAATGCATAAGCCAGGGATCAGCCCGGTCTCTCCTGCGTGATGCAGATCCTGCTG
1 CAGAAAGGCAGAATGCACAAGCCAGGGATCGGTTCGGTCCCCCCTGCGTGATGCAGATCCTGCTG
** *
30504349 TCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
66 TCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATG
* ** *
30504414 AACTCTGTTGCCTAAGCCAACCCATAAAATGAGCGTGCGGACGCTCAGCCGGC
131 AACTCCGTTGCCTAAGCCAACCCATAAAACAAGCGTGCGGACGCTCAGCCGAC
* * *
30504467 CAGAAAGGTAGAATGCACAGGCCAGGGATCGGTTCGGTCCCCCCTGCGTGCTGTC-GATCCTGCT
1 CAGAAAGGCAGAATGCACAAGCCAGGGATCGGTTCGGTCCCCCCTGCGTGATG-CAGATCCTGCT
*
30504531 G-CTGTAACCCTC-AGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGA-TTGGG
65 GTC-GTAACCCTCGA-TCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GG
* * * **
30504593 GATGAACTCCGTATGCCTAGGTCAACCCATAAAACAAGCGT-CGGGA-GCTTGGCCGAC
127 AATGAACTCCGT-TGCCTAAGCCAACCCATAAAACAAGCGTGC-GGACGCTCAGCCGAC
* * ** *
30504650 CAGAGAGGCAGGATGTGCAAGCCGGGGATCG
1 CAGAAAGGCAGAATGCACAAGCCAGGGATCG
30504681 AACAGGTGGT
Statistics
Matches: 179, Mismatches: 29, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
182 3 0.02
183 148 0.83
184 28 0.16
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (183 bp):
CAGAAAGGCAGAATGCACAAGCCAGGGATCGGTTCGGTCCCCCCTGCGTGATGCAGATCCTGCTG
TCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATG
AACTCCGTTGCCTAAGCCAACCCATAAAACAAGCGTGCGGACGCTCAGCCGAC
Found at i:30505316 original size:26 final size:26
Alignment explanation
Indices: 30505278--30505330 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30505268 GGCTCAAAAT
30505278 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30505304 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30505330 C
1 C
30505331 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30505917 original size:342 final size:344
Alignment explanation
Indices: 30505276--30505956 Score: 796
Period size: 342 Copynumber: 2.0 Consensus size: 344
30505266 GTGGCTCAAA
*
30505276 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAAC
1 ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAAC
* * ***
30505341 CCATGAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCTGGGGATCGAC
66 CCATAAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAACCAAGGATCGAC
* ** * ** * * *
30505406 CTGGTCCCCCTCTATGTGCTGTTGGTCCCACTCCCATAACTTTCTATCTAGCTGGGGCTTAGACA
131 CCGGTCCCCCTCTACATGCTGTCGGTCCCACTCCCATAACCCTCGATCCAGCTGGGACTTAGACA
* * * *
30505471 TGGACTGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGCACGGGCGTTCAACCGGTCGAA
196 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGTTCAACCGATCGAA
* * * * * * *
30505536 GAGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCT-TGCATGCTGCCGATCCTACTGCCG
261 GAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTACCGATCCCACTACCA
30505600 CAACCCTCGATCCGATCCT
326 CAACCCTCGATCCGATCCT
* * **
30505619 ATCTTAGACTGGGAATGAACTCCGCGTGCTTAGAC-TAGGTATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAA
** * * * * ** * *
30505683 CCCATAAAATGAGCGTTCGGTCGCTGAGTCGGTCGGAGAGGCATAAT-CTG-AAACCAAGGATTG
65 CCCATAAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATAC-GCAAACCAAGGATCG
* *** *
30505746 ACCCGGTCCCCCTCTGCATGCTGTCGGTCCTGTTGCCATAACCCTCGATCCAGCTGGGACTTAGA
129 ACCCGGTCCCCCTCTACATGCTGTCGGTCCCACTCCCATAACCCTCGATCCAGCTGGGACTTAGA
* * ** * *
30505811 CATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTT-AGCCGATC
194 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCG-TTCAACCGATC
* * * * *
30505875 GGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGGTCCCACTA
258 GAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTACCGATCCCACTA
30505940 CCACAACCCTCGATCCG
323 CCACAACCCTCGATCCG
30505957 GTTGGGGCTT
Statistics
Matches: 278, Mismatches: 56, Indels: 8
0.81 0.16 0.02
Matches are distributed among these distances:
342 149 0.54
343 129 0.46
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (344 bp):
ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAAC
CCATAAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAACCAAGGATCGAC
CCGGTCCCCCTCTACATGCTGTCGGTCCCACTCCCATAACCCTCGATCCAGCTGGGACTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGTTCAACCGATCGAA
GAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTACCGATCCCACTACCA
CAACCCTCGATCCGATCCT
Found at i:30505971 original size:159 final size:159
Alignment explanation
Indices: 30505740--30506063 Score: 391
Period size: 159 Copynumber: 2.0 Consensus size: 159
30505730 CTGAAACCAA
* * ** *** * *
30505740 GGATTGACCCGGTCCCCCTCTGCATGCTGTCGGTCCTGTTGCCATAACCCTCGATCCAGCTGGGA
1 GGATCGACCCGATCCCCCTCTGCATGCTACCGGTCCCACTACCACAACCCTCGATCCAGCTGGGA
* * * * *
30505805 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAGC
66 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGC
30505870 CGATCGGAGAGGCAGAATG-CGCAAG-TCGG
131 CGATCGGAGAGGCAGAATGAC-CAAGCT-GG
* * * *
30505899 GGATCGACCCGATCCCCCTCTGCGTGCTACCGGTCCCACTACCACAACCCTCGATCCGGTTGGGG
1 GGATCGACCCGATCCCCCTCTGCATGCTACCGGTCCCACTACCACAACCCTCGATCCAGCTGGGA
* * * * * *
30505964 CTTAGACATGGAATGAACTCCCTATACGTAAGCCAACCCACGAAATGGGTATGTGGGTGCTCAGT
66 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGC
*
30506029 CGGTCGGAGAGGCAGAATGACCAAGCTGG
131 CGATCGGAGAGGCAGAATGACCAAGCTGG
30506058 GGATCG
1 GGATCG
30506064 GCTCGGTCCC
Statistics
Matches: 138, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
159 136 0.99
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
GGATCGACCCGATCCCCCTCTGCATGCTACCGGTCCCACTACCACAACCCTCGATCCAGCTGGGA
CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGC
CGATCGGAGAGGCAGAATGACCAAGCTGG
Found at i:30506163 original size:26 final size:26
Alignment explanation
Indices: 30506122--30506174 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30506112 CTGGTTCAAT
30506122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30506148 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
30506174 C
1 C
30506175 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30506356 original size:26 final size:26
Alignment explanation
Indices: 30506318--30506370 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30506308 CCTATCCAAT
*
30506318 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
30506344 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
30506370 C
1 C
30506371 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:30506530 original size:26 final size:26
Alignment explanation
Indices: 30506501--30506553 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30506491 CCAGTCCGAT
30506501 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30506527 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30506553 C
1 C
30506554 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30506626 original size:183 final size:183
Alignment explanation
Indices: 30506294--30506626 Score: 465
Period size: 183 Copynumber: 1.8 Consensus size: 183
30506284 GGTCCTGTTA
*
30506294 CCGTAACCCTTGGTCCTATCCAATCTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATG
1 CCGTAACCCTCGGTCCTATCCAATCTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATG
* * * * * *
30506359 AACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCTACCGATCGGAGACTCAG
66 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCTACCGACCAGAGACGCAG
*
30506424 AATGCATAAGCCAGGGATCGCCTTGGTCCCCCCTACATGCGCCGATCCTGCTG
131 AATGCACAAGCCAGGGATCGCCTTGGTCCCCCCTACATGCGCCGATCCTGCTG
* * *
30506477 CCGTAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGA
1 CCGTAACCCTCGGTCCTA-TCCAATCTTAGACCGGGAATGAACTCCGTATGCTTAGACAT-GGAA
* * *
30506540 TGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCT-TAACCGACCAGAGAGG
64 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCT-ACCGACCAGAGACG
* * *
30506604 CAGGATGCGCAAGCCGGGGATCG
128 CAGAATGCACAAGCCAGGGATCG
30506627 AACGGGTGGT
Statistics
Matches: 130, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
182 3 0.02
183 127 0.98
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
CCGTAACCCTCGGTCCTATCCAATCTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCTACCGACCAGAGACGCAG
AATGCACAAGCCAGGGATCGCCTTGGTCCCCCCTACATGCGCCGATCCTGCTG
Found at i:30507252 original size:26 final size:26
Alignment explanation
Indices: 30507214--30507292 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
30507204 GGCTCAAAAT
30507214 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
**
30507240 CTTAGACATGGAATGAACTCTATATG
1 CTTAGACATGGAATGAACTCCGTATG
30507266 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30507292 C
1 C
30507293 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30507455 original size:26 final size:26
Alignment explanation
Indices: 30507426--30507477 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30507416 CGGTCTGATA
30507426 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
30507452 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
30507478 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:30508184 original size:26 final size:26
Alignment explanation
Indices: 30508146--30508224 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
30508136 GGCTCAAAAT
*
30508146 CTTAGAC-TAGGAATGAACTTCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
30508172 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
*
30508198 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
30508224 C
1 C
30508225 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30508398 original size:26 final size:26
Alignment explanation
Indices: 30508358--30508409 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30508348 CAGTCTAATA
30508358 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
30508384 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
30508410 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:30508840 original size:930 final size:928
Alignment explanation
Indices: 30506318--30509341 Score: 4675
Period size: 925 Copynumber: 3.3 Consensus size: 928
30506308 CCTATCCAAT
** * *
30506318 CTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
1 CTTAGACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * ** ** *
30506383 ATGAAACGAGCGTGCGGGTGCTCTACCGATCGGAGACTCAGAATGCATAAGCCAGGGATC-GCCT
66 ACGAAACGAGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCC-
* * * * * * ** * * * *
30506447 TGGTC-CCCCCTACATGC-GCCGATCCTGCTGCCGTAACCCT-CGGTCCAGTCCGATCTTAGACT
130 CGATCTACCCCTGCGTGCTGTCGATCCTGCTGCCACAA-CGTGCAGTCCAGTCTGATATTAGACT
30506509 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACG
194 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACG
*
30506574 AGCGTGCGGGCGCTTAACCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAG
259 AGCGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAG
*
30506639 GTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGTTTGTAAATTCAT
324 GTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
30506704 ACAATGTTTCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCACA
389 ACAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCACG
*
30506769 ATTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTGGAAAGAGGTTTGTCCCCAAA
454 ATTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAAA
* *
30506834 ATTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAACAATTCAATGAAAAACTCGAAG
519 ATTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCATAAAACAATTCAATTAAAAACTCGAAG
30506899 TGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
584 TGGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
30506964 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGCGAGTTCTCGAGGTTTGATTAGGGAT
649 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
30507029 AGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTATGCACACCCCCTCGAC
714 AGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTCG-C
* * * * *
30507094 CCCCCCAATCACCGGAACCCCCAATGCTGTCGATTAGGCTCTCCGGTGATG-------G-TGCCC
778 CCCCCCAATCACTGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGATGATGCTCCAACGATGCTC
* * * *
30507151 CGGGCAAAAAAAATGCGGCACCAACACATGCCCGATCTCAGTATGTGCACCGTGGCTCAAAATCT
843 TGGGCGAAAAAAATGCGGCACCAACACATGCCCGACCTCAGTATGCGCACCGTGGCTCAAAATCT
30507216 TAGACTGGGAATGAACTCCGTATG
908 TAGACT-GGAATGAACT-C-TATG
*
30507240 CTTAGACATGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
30507305 ACGAAACGAGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGGGCAAGCCGAGGATCGGCTC
66 ACGAAACGAGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCC
* *
30507370 GATCTACCCCTGCGTGCTGTCGATCCTGCTGCCACAACGTGTAGTCCGGTCTGATATTAGACTGG
131 GATCTACCCCTGCGTGCTGTCGATCCTGCTGCCACAACGTGCAGTCCAGTCTGATATTAGACTGG
30507435 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAACGGAACGA
196 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC-ACGGAACGA
*
30507500 GCGTGCAGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAGG
260 GCGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAGG
* * *
30507565 TAGGTTCAAGCACGTCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
325 TGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
30507630 CAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCTGTTTTCTATTTTTCACGA
390 CAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCACGA
** *
30507695 TTTTTGAAACTTTTTGTCTTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAAAT
455 TTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAAAA
30507760 TTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCATAAAACAATTCAATTAAAAACTCGAAGT
520 TTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCATAAAACAATTCAATTAAAAACTCGAAGT
*
30507825 GGAGAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
585 GGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
30507890 GTAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
650 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
30507955 AGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGTACTTCATGTACGCACACCCCTTCGGCC
715 GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTCGCCC
*
30508020 CCCCAATCACTGGAACCCCCAATACCGTCGGTTAGGCTCTCCGATGATGCTCCAACGATGCTCTG
780 CCCCAATCACTGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGATGATGCTCCAACGATGCTCTG
* * *
30508085 GGCGAAAAAAATACGGCACCAACACATGCCCGAGCTCAGTATGCACACCGTGGCTCAAAATCTTA
845 GGCGAAAAAAATGCGGCACCAACACATGCCCGACCTCAGTATGCGCACCGTGGCTCAAAATCTTA
30508150 GACTAGGAATGAACTTCATATG
910 GACT-GGAATGAAC-TC-TATG
*
30508172 CTTAGACATGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
30508237 ATGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCAAGGATCGGCCC
66 ACGAAACGAGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCC
* * *
30508302 GGTCTA-CCCTAGCGTGCTGTCGATCCTGGTGCCACAACGTGCAGTCCAGTCTAATATTAGACTG
131 GATCTACCCCT-GCGTGCTGTCGATCCTGCTGCCACAACGTGCAGTCCAGTCTGATATTAGACTG
*
30508366 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGGAACGA
195 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACGA
*
30508431 GCATGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAGG
260 GCGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAGG
30508496 TGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATA
325 TGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
30508560 CAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCATGA
390 CAATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCACGA
30508625 TTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAAAA
455 TTTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAAAA
*
30508690 TTGGTAGAGGTGATCCCTGTATTTTTGTTAGCATGCATAAAACAATTCAATTAAAAACTCGAAGT
520 TTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCATAAAACAATTCAATTAAAAACTCGAAGT
*
30508755 GGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
585 GGAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
30508820 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
650 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
30508885 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTCAGCC
715 GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTC-GCC
* *
30508950 CCCCCAATCA-TCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCAACGATGCTCCAACGATGCTC
779 CCCCCAATCACT-GGAACCCCCAATGCCGTCGGTTAGGCTCTCCGATGATGCTCCAACGATGCT-
30509014 CGGCGATGGTGCCCCGGGTGAAAAAAATGCGGCACCAACACATGCCCGACCTCAGTATGCGCACC
842 ---C--TGG-G---C----GAAAAAAATGCGGCACCAACACATGCCCGACCTCAGTATGCGCACC
30509079 GTGGCTCAAAATC-T----T---A-G------A--
894 GTGGCTCAAAATCTTAGACTGGAATGAACTCTATG
30509097 C-T-G----GGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *** * *
30509156 ACGAAACGAGCGTGTGGGCGGTCAACCAATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCT
66 ACGAAACGAGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCC
* *
30509221 GATCTACCCCTGCGTGCTGTCGATCCTGCTGCCACAACGTGCATTCCGGTCTGATATTAGACTGG
131 GATCTACCCCTGCGTGCTGTCGATCCTGCTGCCACAACGTGCAGTCCAGTCTGATATTAGACTGG
*
30509286 GAATGAACTCCGTATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCA
196 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
30509342 TGAAATGAGC
Statistics
Matches: 1941, Mismatches: 129, Indels: 67
0.91 0.06 0.03
Matches are distributed among these distances:
919 220 0.11
920 4 0.00
922 112 0.06
923 14 0.01
924 137 0.07
925 502 0.26
927 1 0.00
930 394 0.20
931 175 0.09
932 315 0.16
933 1 0.00
935 2 0.00
936 1 0.00
937 3 0.00
938 1 0.00
940 1 0.00
941 1 0.00
944 1 0.00
945 56 0.03
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (928 bp):
CTTAGACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCC
GATCTACCCCTGCGTGCTGTCGATCCTGCTGCCACAACGTGCAGTCCAGTCTGATATTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAG
CGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAGGT
GGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGTTCCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGGTGACCCGTTTTCTATTTTTCACGAT
TTTTGAAACTTTTTGTGGTTCGGGATATTTTAAAATTTTTTTAGAAAGAGGTTTGTCCCCAAAAT
TGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCATAAAACAATTCAATTAAAAACTCGAAGTG
GAGAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGACCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACGCACACCCCCTCGCCCC
CCCAATCACTGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGATGATGCTCCAACGATGCTCTGG
GCGAAAAAAATGCGGCACCAACACATGCCCGACCTCAGTATGCGCACCGTGGCTCAAAATCTTAG
ACTGGAATGAACTCTATG
Found at i:30509021 original size:11 final size:11
Alignment explanation
Indices: 30508989--30509014 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30508979 CGGTTAGGCT
30508989 CTCCAACGATG
1 CTCCAACGATG
30509000 CTCCAACGATG
1 CTCCAACGATG
30509011 CTCC
1 CTCC
30509015 GGCGATGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.42, G:0.15, T:0.19
Consensus pattern (11 bp):
CTCCAACGATG
Found at i:30509129 original size:26 final size:26
Alignment explanation
Indices: 30509091--30509143 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30509081 GGCTCAAAAT
30509091 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30509117 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30509143 C
1 C
30509144 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30509306 original size:26 final size:26
Alignment explanation
Indices: 30509277--30509328 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30509267 CGGTCTGATA
30509277 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
30509303 TTAGACTGGGTATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
30509329 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:30517321 original size:158 final size:155
Alignment explanation
Indices: 30516820--30517321 Score: 418
Period size: 158 Copynumber: 3.2 Consensus size: 155
30516810 ACTCCGTATG
* * *
30516820 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGCGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGA-CGTGCGGGCGCTCAGC
* ** ** * * * *
30516885 CGACTGAAGAGGTAGAATGCACAAGTTGGGGATCGGCCTGATCCCCCCTGAGTGCTATCGATCCT
65 CG-CCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCCTGCGTGCTACCGATCCT
* * *
30516950 GCTACCGCAACCCTCGATCTGGTCTGAT
129 GCTACCGCAACCCTCGGTC-CGTCCGAT
* * * * ** * *
30516978 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGA-ATGCAAGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-G-GACGTGCGGGCGCTCA
* * * * * * * * *
30517041 GCTGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGACTCGATCCCCTTCTGCGTGCTGCTGGT
63 GC-CGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGAT-CCCTCCTGCGTGCTACCGAT
* * * * * * * **
30517106 CTTACTGCCACAACCCTCGGTTCGGCTGGGG
126 CCTGCTACCGCAACCCTCGGTCCGTC-CGAT
* * *
30517137 CCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGACGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGACGTGCGGGCGCTCAGC
* *
30517202 CAGCCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCC-AGTCCCTCCTGCGTGCTACCGATCC
65 C-GCCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGA-TCCCTCCTGCGTGCTACCGATCC
* *
30517266 TGCTACCGTAACTCTCGGTCCGATCCGAT
128 TGCTACCGCAACCCTCGGTCCG-TCCGAT
30517295 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30517322 TTATAATGGA
Statistics
Matches: 256, Mismatches: 76, Indels: 24
0.72 0.21 0.07
Matches are distributed among these distances:
157 2 0.01
158 139 0.54
159 112 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGACGTGCGGGCGCTCAGCC
GCCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCCTGCGTGCTACCGATCCTGC
TACCGCAACCCTCGGTCCGTCCGAT
Found at i:30517711 original size:25 final size:26
Alignment explanation
Indices: 30517674--30517725 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
30517664 CCGGTCCGAT
30517674 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30517699 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
30517725 C
1 C
30517726 GTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30518060 original size:159 final size:158
Alignment explanation
Indices: 30517700--30518165 Score: 537
Period size: 159 Copynumber: 2.9 Consensus size: 158
30517690 ACTCGTATGC
* * * * *
30517700 TTAGACATGGAATGAACTCTGTATGCGTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
30517765 GGTCGGAAAGGCAGAATGCGCAAGTCGGGGAT-TGCCTCGATCCCCTCTGCGTGCTGTCGATCTT
66 GGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCC-CGATCCCCTCTGCGTGCTGTCGATCCT
* * * *
30517829 GTTGCCGCAACCCTCAGTCC-AGTGGATC
130 GCTGCCGCAACCCTCGGTCCGACTGGATA
* * *
30517857 TTAGAC-TGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * *
30517921 CGACCAGAGAGGCATAATGTGCAAGTCAGGGATCGGCCCGGTTCCCCTCTGTGTGCTGTCGGTCC
65 CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCC-GATCCCCTCTGCGTGCTGTCGATCC
* *
30517986 CGCTGCCACAACCCTCGGTCCGACTAGGA-A
129 TGCTGCCGCAACCCTCGGTCCGACT-GGATA
* ** *
30518016 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTTGAAATG-GACGTGCGGGCGCTCAGT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGCGCTCAGC
* * * *
30518080 CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCTCCTCTGCGTGCTGCCAATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCT
*
30518145 GCTGCTGCAACCCTCGGTCCG
130 GCTGCCGCAACCCTCGGTCCG
30518166 GTCCGATCTT
Statistics
Matches: 255, Mismatches: 47, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.00
157 81 0.32
158 80 0.31
159 89 0.35
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGACTGGATA
Found at i:30518916 original size:26 final size:26
Alignment explanation
Indices: 30518878--30518930 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30518868 GGCTCAAAAT
30518878 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30518904 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30518930 C
1 C
30518931 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30519611 original size:26 final size:26
Alignment explanation
Indices: 30519575--30519627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30519565 CAGGTTCGAT
30519575 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
30519601 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30519627 C
1 C
30519628 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30519713 original size:343 final size:350
Alignment explanation
Indices: 30519258--30520030 Score: 751
Period size: 355 Copynumber: 2.2 Consensus size: 350
30519248 CCGGTCTGAT
* * * * * * *
30519258 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCATTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAACATGCGGGCGCTCAGC
* ** * * * *
30519323 CGATTGGAGAGGCATAATGTGCAACCCAGGGATCAGCCCGGTCCCCCTCTGC-G-TG-C-T-A-T
66 AGACCGGAGAGGCATAAGGCGCAACCCAGGGATCAACCCGATCCCCCTCTGCGGCTGTCATCACT
* *
30519382 -CGGTCCTGCTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCC
131 ACGGTCCTGCTGCCACAACCCTCGGTCCAG-CTAGGGCTTAGACAGGGAATGAACTCCCTATGCC
** * * * *
30519445 TAAGCCAACCCATGAAACGAGTGTATGGGCACTTAGCTAG-CCGAAGAGGCAGAATGCGTAAG-C
195 TAAGCCAACCCAAAAAACGAGCGTACGGGCACTCA-ATAGACCGAAGAGGCAGAAT-CGTAAGCC
* * ** *
30519508 TAGGGATCGACCCGGTCCCC-CCTGTGTGCTGTCGATCCTGCTATCGCATCCCTCGGTCAGGTTC
258 T-GGGATCAACCCGATCCCCTCCTGCATGATGTCGATCCTGCTATCGCATCCCTCGGTCAGGTTC
30519572 GATCTTAGACTGGGAATAAACTCCGTATG
322 GATCTTAGACTGGGAATAAACTCCGTATG
* * * *
30519601 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCTACCCACGAAAAGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAACATGCGGGCGCTCAGC
* * * *
30519666 AGGCCGGAGGGGCATAAGGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCC
66 AGACCGGAGAGGCATAAGGCGCAACCCAGGGATCAACCCGATCCCCCTCTGCG-GCTGTC-AT--
* * **
30519731 CACTACCGGTCTTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACCGGGAATGAACTCTGTA
127 CACTA-CGGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACAGGGAATGAACTCCCTA
* * * *
30519796 TGCCTAAGCCAACCCAAAAAATGAGCGTGCGGGCACTCAATCGATCGAAGAGGCAGAATCGTAAG
191 TGCCTAAGCCAACCCAAAAAACGAGCGTACGGGCACTCAATAGACCGAAGAGGCAGAATCGTAAG
*
30519861 CCTGGGATCAACCCGATCCCCTCCTGCATGATGTCGATCCTGCTGCTGGTCCTACTGCTGCAACC
256 CCTGGGATCAACCCGATCCCCTCCTGCATGATGTCGA---T-C--CT-G--CTA-T-C-GCATCC
* * * * * * *
30519926 CTCGGTCCGGTCCAATCTTAGACTGGGAGTGAACTTCGTATA
309 CTCGGTCAGGTTCGATCTTAGACTGGGAATAAACTCCGTATG
* * * * * *
30519968 CTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCCTGCGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAACATGCGGGCGCTCA
30520031 ACCGGCTAGA
Statistics
Matches: 341, Mismatches: 60, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
343 95 0.28
345 1 0.00
346 2 0.01
347 1 0.00
349 1 0.00
352 1 0.00
353 1 0.00
354 24 0.07
355 111 0.33
356 1 0.00
358 1 0.00
359 1 0.00
361 2 0.01
362 1 0.00
364 3 0.01
365 1 0.00
366 1 0.00
367 92 0.27
368 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (350 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAACATGCGGGCGCTCAGC
AGACCGGAGAGGCATAAGGCGCAACCCAGGGATCAACCCGATCCCCCTCTGCGGCTGTCATCACT
ACGGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACAGGGAATGAACTCCCTATGCCT
AAGCCAACCCAAAAAACGAGCGTACGGGCACTCAATAGACCGAAGAGGCAGAATCGTAAGCCTGG
GATCAACCCGATCCCCTCCTGCATGATGTCGATCCTGCTATCGCATCCCTCGGTCAGGTTCGATC
TTAGACTGGGAATAAACTCCGTATG
Found at i:30519984 original size:26 final size:26
Alignment explanation
Indices: 30519942--30519992 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30519932 CCGGTCCAAT
* *
30519942 CTTAGACTGGGAGTGAACTTCGTATA
1 CTTAGACTGGGAATGAACTACGTATA
30519968 CTTAGACAT-GGAATGAACTACGTAT
1 CTTAGAC-TGGGAATGAACTACGTAT
30519993 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATA
Found at i:30520473 original size:26 final size:26
Alignment explanation
Indices: 30520444--30520496 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30520434 CTGATCCGAT
30520444 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30520470 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30520496 C
1 C
30520497 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30521308 original size:26 final size:26
Alignment explanation
Indices: 30521279--30521331 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30521269 CCGGTCCGAT
30521279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30521305 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30521331 C
1 C
30521332 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30521588 original size:335 final size:338
Alignment explanation
Indices: 30521116--30521745 Score: 761
Period size: 346 Copynumber: 1.8 Consensus size: 338
30521106 CTCAATCCGC
* * *
30521116 CTGGGGCTTAGACATGGAATAAACATCTACGCCTAAGCCAACCCACGAAATGGGCGTACGAGCGC
1 CTGGGGCTTAGACATGGAATAAACATCTACGCCTAAGCCAACCCACGAAACGAGCATACGAGCGC
* * * * * *
30521181 TCAGCCGGTCAGAGAGGTAGAATGCGTAAGCCAAGGATCGATCCAATCCCCCCTGCATGCTGT--
66 TCAACCGGTCAGAGAGGCACAATGCGCAAGCCAAGGATCGACCCAATCCCCCCTACATGCTGTAA
*
30521244 CG-A-TCCTGCTGCCACAACCCCCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
131 CGCAGTCCTGCTGCCACAACCCCCGATCCGGT-CGAACTTAGACTGGGAATGAACTCCGTATGCT
* * * *
30521307 TAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGTGCTCAGCC
195 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCC
* * *
30521371 GGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCTGGTCCTTCTCTATCGGTCCTGCTACCG
259 AGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCTGGTCCTTCTCTATCGGTCCTGCTACCG
30521436 CAACCTTTGGTCCAA
324 CAACCTTTGGTCCAA
* * * * * *
30521451 CTGGGGCTTAGACATGGAATGAAC-TCTTATGCCTAAGCCAACCCATGAAACGAGCATCCGGGTG
1 CTGGGGCTTAGACATGGAATAAACATC-TACGCCTAAGCCAACCCACGAAACGAGCATACGAGCG
** * * *
30521515 CTCAACCGGTC-GAAGAGGCACAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTACGTGCTGT
65 CTCAACCGGTCAG-AGAGGCACAATGCGCAAGCCAAGGATCGACCCAATCCCCCCTACATGCTGT
* * * *
30521579 AGATCCTGCTAGTGGTCCTGCTGCCGCAACCCTCGTTCTGGTCGAACTTAGACTGGGAATGAACT
129 A-A--C-GC-A---GTCCTGCTGCCACAACCCCCGATCCGGTCGAACTTAGACTGGGAATGAACT
* * * * *
30521644 CCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGC
186 CCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGC
*
30521709 GCTCAGCTAGCCGGAGAGGCAGAATGCACAAGCCGGG
251 GCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCGGG
30521746 CATCGGCCCA
Statistics
Matches: 242, Mismatches: 38, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
334 3 0.01
335 103 0.43
340 1 0.00
341 1 0.00
343 1 0.00
346 109 0.45
347 24 0.10
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (338 bp):
CTGGGGCTTAGACATGGAATAAACATCTACGCCTAAGCCAACCCACGAAACGAGCATACGAGCGC
TCAACCGGTCAGAGAGGCACAATGCGCAAGCCAAGGATCGACCCAATCCCCCCTACATGCTGTAA
CGCAGTCCTGCTGCCACAACCCCCGATCCGGTCGAACTTAGACTGGGAATGAACTCCGTATGCTT
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAG
CCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCTGGTCCTTCTCTATCGGTCCTGCTACCGCA
ACCTTTGGTCCAA
Found at i:30521663 original size:26 final size:26
Alignment explanation
Indices: 30521625--30521677 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30521615 TCTGGTCGAA
30521625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30521651 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30521677 C
1 C
30521678 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30522137 original size:157 final size:156
Alignment explanation
Indices: 30521651--30522150 Score: 486
Period size: 158 Copynumber: 3.2 Consensus size: 156
30521641 ACTCCGTATG
* * * *
30521651 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
30521716 TAGCCGGAGAGGCAGAATGCACAAGCCGGGCATCGGCCCAGTCCCCCCTGCGTGCTG-TCGATCC
66 CA-CCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGT-CCCCCTGCGTGTTGCT-GATCC
* * * *
30521780 TACTGTCACGACCCTCAGTCCGTTCCGAT
128 TGCTGTCACAACCCTCGGTCCGGTCCGAT
* * *
30521809 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * * *
30521873 CCAGCGGAGAGGCATAATACGCAAGTCAAGGATCGGTCCAATCCCTTTCTGCGTGTTGCCGGTCC
65 CCACCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCC--CCTGCGTGTTGCTGATCC
* * ** * **
30521938 AGCTGCCACAACCCTCGGTCTAG-CTGGGG
128 TGCTGTCACAACCCTCGGTCCGGTC-CGAT
* * * * *
30521967 CTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-
* * ** * *
30522032 CGATCGGAGAGGCAGAATACGTGAGCCGGGGATCGGCCCGGTCCCCCTGCGCGTTGCTGATCCTG
65 CCACCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCTGCGTGTTGCTGATCCTG
*
30522097 CTGTCGCAACCCTCGGTCCGGTCCGAT
130 CTGTCACAACCCTCGGTCCGGTCCGAT
30522124 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30522151 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 66, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
156 4 0.01
157 87 0.33
158 141 0.53
159 35 0.13
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CACCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCTGCGTGTTGCTGATCCTGC
TGTCACAACCCTCGGTCCGGTCCGAT
Found at i:30522153 original size:26 final size:26
Alignment explanation
Indices: 30522124--30522174 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30522114 CCGGTCCGAT
30522124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30522150 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
30522175 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30522372 original size:26 final size:26
Alignment explanation
Indices: 30522334--30522386 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30522324 CTGGTTTGAT
30522334 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30522360 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30522386 C
1 C
30522387 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30522862 original size:26 final size:26
Alignment explanation
Indices: 30522833--30522885 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30522823 CTGGTCCGAT
30522833 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30522859 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30522885 C
1 C
30522886 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30523191 original size:26 final size:26
Alignment explanation
Indices: 30523162--30523214 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30523152 CCGGTCCCAT
30523162 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30523188 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30523214 C
1 C
30523215 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30523713 original size:26 final size:26
Alignment explanation
Indices: 30523662--30523714 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30523652 CTGGTCTGAT
* *
30523662 CTTATACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30523688 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30523714 C
1 C
30523715 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30524735 original size:26 final size:26
Alignment explanation
Indices: 30524699--30524751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30524689 TCGGTTCGAT
30524699 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30524725 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30524751 C
1 C
30524752 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30525051 original size:195 final size:195
Alignment explanation
Indices: 30524696--30525053 Score: 445
Period size: 195 Copynumber: 1.8 Consensus size: 195
30524686 GGTTCGGTTC
* * * * *
30524696 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCCATATGCTTAAACTGGGAATAAACTCCGTATGCCTAAGCCAA
* * * ** * *
30524761 CCCATGAAACGAGCGTGTAGGCGCTCAGCCAGCGGAGAGGCAGAATGCGTAAGCCGGGGGTCAGC
66 CCAATGAAACGAGCGTGGAGGCACTCAGCCAGCGGAGAGGCAGAATGCACAAGCCGGAGATCAGC
*
30524826 CCGATCCCTCCTGTATGCTGCCTGTCCTGCTGCTGGTCCTACTGCCGTAACCCTCGATCCGATCA
131 CCGATCCCTCCTGCATGCTGCCTGTCCTGCTGCTGGTCCTACTGCCGTAACCCTCGATCCGATCA
* *
30524891 GATCTTAGACTAGGAATGAACTTCGTATGCTTAAACAT-GGAATAAACTCCGTATGCCTAAGCCA
1 GATCTTAGACTAGGAATGAACTCCATATGCTTAAAC-TGGGAATAAACTCCGTATGCCTAAGCCA
* * * * **
30524955 AGCAATGAAACGAGCGTGGAGTCACTCAGTCGGTCGGAGAGGCAGAATGCACAAGCC-GAGATTG
65 ACCAATGAAACGAGCGTGGAGGCACTCAGCCAG-CGGAGAGGCAGAATGCACAAGCCGGAGATCA
* *
30525019 GCCCGATGCCC-CCTGCGTGCTGTC-GATCCTGCTGC
129 GCCCGAT-CCCTCCTGCATGCTGCCTG-TCCTGCTGC
30525054 CACAACTCTC
Statistics
Matches: 136, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
194 1 0.01
195 110 0.81
196 25 0.18
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (195 bp):
GATCTTAGACTAGGAATGAACTCCATATGCTTAAACTGGGAATAAACTCCGTATGCCTAAGCCAA
CCAATGAAACGAGCGTGGAGGCACTCAGCCAGCGGAGAGGCAGAATGCACAAGCCGGAGATCAGC
CCGATCCCTCCTGCATGCTGCCTGTCCTGCTGCTGGTCCTACTGCCGTAACCCTCGATCCGATCA
Found at i:30525309 original size:159 final size:158
Alignment explanation
Indices: 30524919--30525383 Score: 413
Period size: 159 Copynumber: 2.9 Consensus size: 158
30524909 AACTTCGTAT
* * * * * *
30524919 GCTTAAACATGGAATAAACTCCGTATGCCTAAGCCAAGCAATGAAACGAGCGTGGA-GTCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG-G-GTGTACGACACTCA
* * * * * * * * *
30524983 GTCGGTCGGAGAGGCAGAATGCACAAGCCGA-GATTGGCCCGATGCCCC-CTGCGTGCTGTCGAT
64 GCCGATCGAAGAGGCAAAATGCATAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
30525046 CCTGCTGCCACAACTCTCGGTTTGATCTGA
129 CCTGCTGCCACAACCCTCGGTCTGAGCTGA
* * * * * * * * * *
30525076 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGACGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGTGTAC-GACACTCA
* *
30525140 GCCGATCGAAGAGGCATAATGCATAAGCCGAGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGAT
64 GCCGATCGAAGAGGCAAAATGCATAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
30525205 CCCGCTGCCATAACCCTCGGTCTG-GCTGGG
129 CCTGCTGCCACAACCCTCGGTCTGAGCT-GA
* *
30525235 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGTGTAC-GACACTCAG
* * * * * * * *
30525300 CCAACCGAAGAGGTAAAATGCGTAAGTCGGGGATC-AGCCCGGTCCCCCT-TCCGTGCTGCCGAT
65 CCGATCGAAGAGGCAAAATGCATAAGCCGAGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGAT
* *
30525363 CCTGCTACCGCAACCCTCGGT
129 CCTGCTGCCACAACCCTCGGT
30525384 TTGGTTCAAT
Statistics
Matches: 241, Mismatches: 59, Indels: 15
0.77 0.19 0.05
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 68 0.28
158 44 0.18
159 125 0.52
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGTGTACGACACTCAGC
CGATCGAAGAGGCAAAATGCATAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCTGAGCTGA
Found at i:30525801 original size:26 final size:26
Alignment explanation
Indices: 30525772--30525824 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30525762 CTGGTCTGAT
*
30525772 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30525798 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30525824 C
1 C
30525825 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30526258 original size:159 final size:154
Alignment explanation
Indices: 30525801--30526300 Score: 433
Period size: 159 Copynumber: 3.1 Consensus size: 154
30525791 CTGTATGCTT
*
30525801 AGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGA
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
* * * * * **
30525866 CAGGAGAGGCAGAATGCCCAAGCCGGGGTCAGACCCGATCCCCCTGCATGTTATAGATCCTATTG
65 CA-GAGAGGCAGAATGCGCAAGCCGGGATC-GGCCCGATCCCCCTGCATGCTATCGATCCTGCTG
** * * * *
30525931 CCGCAACCCTCAAATCCGATCCGATCTT
128 CCGCAACCCTC-GGTCCGGTTCGAGCTC
* * * * * *
30525959 AGACTGGGAATGAACTCTGTATGCCTACGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGG
1 AGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-G
*** * * * * * ** *
30526024 TTGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGTTTCCCCTCTACATGCTGCCCATCCTGC
64 ACAGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCG-ATCCCC-CTGCATGCTATCGATCCTGC
* * *
30526089 TGCCACAACCCTCGGTCCGGTTGGGGCTC
126 TGCCGCAACCCTCGGTCCGGTTCGAGCTC
* * * * *
30526118 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGATGCGGGCGTTTAGCCA
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGGCGCTCAGCC-
* * *
30526183 GCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTACCCCCTGCGTGCTATCGATCCTGC
63 GACAGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGAT-CCCCCTGCATGCTATCGATCCTGC
* * * * *
30526248 TGCCGTAACCCTCGGTCTGGTTCAATCTT
126 TGCCGCAACCCTCGGTCCGGTTCGAGCTC
*
30526277 AGACTAGGAATGAACTCCATATGC
1 AGACT-GGAATGAACTCCGTATGC
30526301 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 67, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 77 0.29
159 116 0.44
160 72 0.27
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (154 bp):
AGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
AGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTGCATGCTATCGATCCTGCTGCCG
CAACCCTCGGTCCGGTTCGAGCTC
Found at i:30527031 original size:26 final size:26
Alignment explanation
Indices: 30526993--30527045 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30526983 GGCTTAAACT
*
30526993 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30527019 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30527045 C
1 C
30527046 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30527379 original size:26 final size:26
Alignment explanation
Indices: 30527337--30527389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30527327 CCAGTTCAAT
30527337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30527363 CTTAGACTAGGG-TTGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
30527389 C
1 C
30527390 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30527575 original size:26 final size:26
Alignment explanation
Indices: 30527546--30527598 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30527536 CCGGTCCGAT
30527546 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30527572 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30527598 C
1 C
30527599 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30528259 original size:26 final size:26
Alignment explanation
Indices: 30528230--30528282 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30528220 CCGATCCGAT
*
30528230 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30528256 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30528282 C
1 C
30528283 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30528648 original size:26 final size:26
Alignment explanation
Indices: 30528610--30528662 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30528600 CCGGTCTGAT
30528610 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30528636 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30528662 C
1 C
30528663 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30528937 original size:159 final size:159
Alignment explanation
Indices: 30528635--30528999 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 159
30528625 AACTCCATAT
*
30528635 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTACGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTGAG
* * * * **
30528700 TCGGTCAGAGAGGCAGAATGCACAAGCCGAGGACCGACCCGGTCCGCCCCTGCATGCTGTCGATC
66 CCGGTCAGAGAGCCAGAATACACAAGCCAAGGACCGACCCAATCCGCCCCTGCATGCTGTCGATC
* * * * *
30528765 CTACTACCGCAACCCTCGGTTCG-GTCCGG
131 CCACTACCACAACCCTCAGTCCGACT-CGG
* * * * **
30528794 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTTCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTGA
* * * * * * * * *
30528858 GCCGGTCGGAGAGCCATAATACGCAAGCTAAGGATCGACCCAATCC-CCTTCTGCTTGTTGTCGG
65 GCCGGTCAGAGAGCCAGAATACACAAGCCAAGGACCGACCCAATCCGCC-CCTGCATGCTGTCGA
* *
30528922 TCCCACTGCCACAACCCTCAGTCCGACTGGG
129 TCCCACTACCACAACCCTCAGTCCGACTCGG
* * *
30528953 GCTTAGCCATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
30529000 AGGCGTACAG
Statistics
Matches: 168, Mismatches: 34, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
158 3 0.02
159 163 0.97
160 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTGAG
CCGGTCAGAGAGCCAGAATACACAAGCCAAGGACCGACCCAATCCGCCCCTGCATGCTGTCGATC
CCACTACCACAACCCTCAGTCCGACTCGG
Found at i:30529105 original size:16 final size:16
Alignment explanation
Indices: 30529084--30529115 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
30529074 TGCCGATCCT
30529084 ACTACTGCAACCCTCG
1 ACTACTGCAACCCTCG
30529100 ACTACTGCAACCCTCG
1 ACTACTGCAACCCTCG
30529116 GTCCAGTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.44, G:0.12, T:0.19
Consensus pattern (16 bp):
ACTACTGCAACCCTCG
Found at i:30530259 original size:26 final size:26
Alignment explanation
Indices: 30530230--30530282 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30530220 CCGGTCAGAT
**
30530230 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
30530256 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
30530282 C
1 C
30530283 CTAAGCCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:30530851 original size:350 final size:350
Alignment explanation
Indices: 30530227--30530860 Score: 781
Period size: 350 Copynumber: 1.8 Consensus size: 350
30530217 GATCCGGTCA
* * *
30530227 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCCA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGAAATAAACTCCGTATGCCTAAGCCAA
* * * ** * * * *
30530292 ACCCACGAAATGAGCATGCTAGCGCTAAGCCGATTGGAGAGGCAGAATGCGCAAGCCAGGTACCG
66 ACCCACGAAACGAGCATGCGAGCGCTAAGCCAACCGAAGAGGCAGAATGCACAAGCCAGATACAG
* *** * *
30530357 ACCCAGTCCCCCCTACGTGCTGTCGATCCTGCTGTTGCAACCCTCGGTCCGGTCTGATCTTAGAC
131 ACCCAGTCCCCCCTAAGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGAC
* * ** ** * *
30530422 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGACACGAGCGTATGGGTGCTCAACTGGTCGG
196 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCACTCAACCAGCCGA
* *
30530487 AGAGGTAGAATGCGCAAGCCGAGGATCGATCCGGTCCTCCCTACGTGTTACCGATCCTGCTACTG
261 AAAGGCAGAATGCGCAAGCCGAGGATCGATCCGGTCCTCCCTACGTGTTACCGATCCTGCTACTG
30530552 GTCCTGCCACCTCAACCCTCGATCC
326 GTCCTGCCACCTCAACCCTCGATCC
* * *
30530577 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGAAATAAACTTCGTATGCCTAAG-CAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGAAATAAACTCCGTATGCCTAAGCCAA
* * * * *
30530641 ACCCACGAAACGAGCGTGCGGGCGCTCAA-CTAACCGAAGAGGTAGAATGCATAAGCCGAAGAT-
66 ACCCACGAAACGAGCATGCGAGCGCT-AAGCCAACCGAAGAGGCAGAATGCACAAGCC--AGATA
* *
30530704 CAG-CCCGGTCCTCCCCTAAGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCGATCCGATCTT
128 CAGACCCAGTCC-CCCCTAAGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTT
* * * * * * *
30530768 AGACTTGGAATGAACTCTGTATGCCTAATTCAACCCACGAAATGAGCGTGTGGGCACTGAGCCAG
192 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCACTCAACCAG
* *
30530833 CCGAAAAGGCATAATGCGCAAGTCGAGG
257 CCGAAAAGGCAGAATGCGCAAGCCGAGG
30530861 TTCGGCCCGG
Statistics
Matches: 233, Mismatches: 47, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
349 51 0.22
350 179 0.77
351 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (350 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGAAATAAACTCCGTATGCCTAAGCCAA
ACCCACGAAACGAGCATGCGAGCGCTAAGCCAACCGAAGAGGCAGAATGCACAAGCCAGATACAG
ACCCAGTCCCCCCTAAGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCACTCAACCAGCCGA
AAAGGCAGAATGCGCAAGCCGAGGATCGATCCGGTCCTCCCTACGTGTTACCGATCCTGCTACTG
GTCCTGCCACCTCAACCCTCGATCC
Found at i:30532137 original size:26 final size:26
Alignment explanation
Indices: 30532108--30532160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30532098 CCGGTCTGAT
*
30532108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30532134 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30532160 C
1 C
30532161 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30532562 original size:159 final size:158
Alignment explanation
Indices: 30532352--30532917 Score: 536
Period size: 159 Copynumber: 3.6 Consensus size: 158
30532342 ACTTAGGCAT
* * * *
30532352 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAG
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAG
* * * * * * *
30532417 AGGTAGAATGCGCAAG-CTGGGGATC-GACCCGGTCACCCACTTTGTGCTATCGATCATGCTACC
66 AGGCAGAATGCACAAGTC-GGGGATCAG-CTCGGTC-CCCACTTCGTGCTGTCGGTCCTGCTACC
*
30532480 GCAACCCTCAGTCCGGTCTGATCTTAGACTG
128 GCAACCCTCGGTCCGGTCTGATCTTAGACTG
* * * * * *
30532511 GGAATAAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAAGCGCTGAGCCAGTCGGAG
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAG
* * * *
30532576 AGGCATAATGCGCAAGTCGGGGATCAGCTCGGT-CCCACTCTGCGTGCTGTCGGTCCTGCTGCCA
66 AGGCAGAATGCACAAGTCGGGGATCAGCTCGGTCCCCACT-T-CGTGCTGTCGGTCCTGCTACCG
* * ** *
30532640 CAAACCTCGGTCCAG-CTGGGGCTTGGACAT-
129 CAACCCTCGGTCCGGTCT-GATCTTAGAC-TG
** * * * * * *
30532670 GGAATTTACTCCCTATGCCTAAGCCAACCCATGAAA-CAGGTGTGCGAGCGCTCTGCCGGCCAGA
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGAGCGCTCAGCCGGCCAGA
* * * * *
30532734 GAGGCAGAATGCATAAGTCGGGGATCAGCTCGATCCCCCCTACGTGCTGTCGGTCCTACTACCGC
65 GAGGCAGAATGCACAAGTCGGGGATCAGCTCGGTCCCCACTTCGTGCTGTCGGTCCTGCTACCGC
* *
30532799 AACCCTCGGTCTGGTTTGATCTTAGACTG
130 AACCCTCGGTCCGGTCTGATCTTAGACTG
* * * * *
30532828 AGAATAAAC-TCTGTATGCCTAAGTCAACCCATGAAATGAGCATGC-AGACGCTCAGCCGACCAG
1 GGAATAAACTTC-GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAG-CGCTCAGCCGGCCAG
* * *
30532891 AGAGGTAGGATGCACAAGTCAGGGATC
64 AGAGGCAGAATGCACAAGTCGGGGATC
30532918 GAACGGGTGG
Statistics
Matches: 328, Mismatches: 66, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
157 10 0.03
158 110 0.34
159 200 0.61
160 8 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGCCAGAG
AGGCAGAATGCACAAGTCGGGGATCAGCTCGGTCCCCACTTCGTGCTGTCGGTCCTGCTACCGCA
ACCCTCGGTCCGGTCTGATCTTAGACTG
Found at i:30533530 original size:26 final size:25
Alignment explanation
Indices: 30533489--30533540 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
30533479 GGCTTAAAAT
30533489 CTTAGACTAGAATGAACTCCGTATG
1 CTTAGACTAGAATGAACTCCGTATG
*
30533514 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGAC-TAGAATGAACTCCGTATG
30533540 C
1 C
30533541 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCGTATG
Found at i:30534488 original size:170 final size:170
Alignment explanation
Indices: 30534187--30534493 Score: 417
Period size: 170 Copynumber: 1.8 Consensus size: 170
30534177 CTGACTGGGG
* *
30534187 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
* * * *
30534252 CCGCGAAGAGGCAGAATATGCAAGCCGGGGATCGGTCCAGTCCCCCCCTTCATGCTGCCGATCCT
66 CCGCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCCCTTCATGCTACCAATCCT
30534317 GCTGCTATTCCTGCTGCCAAAACCCTTGGTCCAGTCCGAT
131 GCTGCTATTCCTGCTGCCAAAACCCTTGGTCCAGTCCGAT
* *
30534357 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * * * *
30534421 -CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCC-GAT-CCCCCCTGT-GTGCTATCA
65 CCCG--CGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAG-TCCCCCCCT-TCATGCTACCA
30534482 ATCCTGCTGCTA
126 ATCCTGCTGCTA
30534494 CAACCCACGG
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
169 4 0.03
170 83 0.70
171 32 0.27
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (170 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
CCGCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCCCTTCATGCTACCAATCCT
GCTGCTATTCCTGCTGCCAAAACCCTTGGTCCAGTCCGAT
Found at i:30534644 original size:158 final size:158
Alignment explanation
Indices: 30534354--30534647 Score: 372
Period size: 158 Copynumber: 1.9 Consensus size: 158
30534344 GGTCCAGTCC
* *
30534354 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATGCGGGCGCTC
1 GATCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCGCTC
* * * * * *
30534419 AGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTATCAAT
66 AGCCGATCGAAAAGGCAGAATGCACAAGCTAGGGATCGGCCCGATCCCCCCTGCGTGCTACCAAT
30534484 CCTGCTGCTACAACCCACGGTCTGATCT
131 CCTGCTGCTACAACCCACGGTCTGATCT
* * * * * * *
30534512 GATCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACTTACGAAACGAGCGTACGGGTGCTG
1 GATCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCGCTC
* * * * * * * * *
30534577 AGTCGATCGAAAAGGCAGAATGCATAAGCTAGGGATCGGTCTGGTCCCTCTTGCGTGCTGCCGAT
66 AGCCGATCGAAAAGGCAGAATGCACAAGCTAGGGATCGGCCCGATCCCCCCTGCGTGCTACCAAT
30534642 CCTGCT
131 CCTGCT
30534648 ACCGTAACCC
Statistics
Matches: 112, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
158 112 1.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (158 bp):
GATCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCGCTC
AGCCGATCGAAAAGGCAGAATGCACAAGCTAGGGATCGGCCCGATCCCCCCTGCGTGCTACCAAT
CCTGCTGCTACAACCCACGGTCTGATCT
Found at i:30534674 original size:158 final size:157
Alignment explanation
Indices: 30534353--30534699 Score: 363
Period size: 158 Copynumber: 2.2 Consensus size: 157
30534343 TGGTCCAGTC
* * *
30534353 CGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATGCGGGCGCT
1 CGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCGCT
* * * * * *
30534418 CAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTATCAA
66 CAGCCGATCGAAAAGGCAGAATGCACAAGCTAGGGATCGGCCCGATCCCCCCTGCGTGCTACCAA
* * **
30534483 TCCTGCTGCTACAACCCACGGTCTGAT
131 TCCTGCTACCACAACCCACGGGATGAT
* * * * *
30534510 CTGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACTTACGAAACGAGCGTACGGGTGC
1 C-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCGC
* * * * * * * * * *
30534575 TGAGTCGATCGAAAAGGCAGAATGCATAAGCTAGGGATCGGTCTGGTCCCTCTTGCGTGCTGCCG
65 TCAGCCGATCGAAAAGGCAGAATGCACAAGCTAGGGATCGGCCCGATCCCCCCTGCGTGCTACCA
** * *
30534640 ATCCTGCTACCGTAACCCTCGGGATGGTT
130 ATCCTGCTACCACAACCCACGGGAT-GAT
*
30534669 CGATCTTAGACTGGGAATAAAC-TCTGTATGC
1 CGATCTTAGACTGGGAATGAACTTC-GTATGC
30534700 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 34, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
157 3 0.02
158 147 0.96
159 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (157 bp):
CGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACAAAACGAGCATACGGGCGCT
CAGCCGATCGAAAAGGCAGAATGCACAAGCTAGGGATCGGCCCGATCCCCCCTGCGTGCTACCAA
TCCTGCTACCACAACCCACGGGATGAT
Found at i:30534717 original size:26 final size:26
Alignment explanation
Indices: 30534673--30534725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30534663 ATGGTTCGAT
30534673 CTTAGACTGGGAATAAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
* *
30534699 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
30534725 C
1 C
30534726 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:30535844 original size:159 final size:157
Alignment explanation
Indices: 30535417--30535846 Score: 461
Period size: 159 Copynumber: 2.7 Consensus size: 157
30535407 AACTCTGTAT
* *
30535417 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * ** *
30535482 CCGGCTGGAGAGGTAGAATGCACAAGCCGAGGATCGACCTGGT-CCCCCGGCGTGCTGTCAATCC
66 -CGACCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCTGGTCCCCCCGGCATGCTGTCAATCC
* * * *
30535546 TTCTGCCCCAACCCTCGGTTCTGTCCGA
130 TACTGCCACAACCCTCGGTTCCGACCGA
* * ** * * * * * *
30535574 TCTTATAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTACACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * **
30535638 GCTGACCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGTTGTCGGT
65 GC-GACCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCTGGTCCCCC-CGGCATGCTGTCAAT
* *
30535703 CCTACTGCCACAACCCTCGG-TCCGACTGGG
128 CCTACTGCCACAACCCTCGGTTCCGAC-CGA
*
30535733 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
30535798 TCGATCGAAGAGGCAGAATCCGTAAGCCGAGGATCGGCCTGATCCCCCC
66 -CGACCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCTGGTCCCCCC
30535847 TACGTGCTAC
Statistics
Matches: 219, Mismatches: 47, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
156 2 0.01
157 85 0.39
158 9 0.04
159 121 0.55
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CGACCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCTGGTCCCCCCGGCATGCTGTCAATCCT
ACTGCCACAACCCTCGGTTCCGACCGA
Found at i:30535933 original size:26 final size:26
Alignment explanation
Indices: 30535892--30535944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30535882 CTGGTTCAAT
30535892 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
30535918 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30535944 C
1 C
30535945 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30536233 original size:356 final size:343
Alignment explanation
Indices: 30535575--30536274 Score: 771
Period size: 356 Copynumber: 2.0 Consensus size: 343
30535565 TCTGTCCGAT
* * * * *
30535575 CTTATACTGGGAATGAACTTTGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
30535640 TGACCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGTTGTCGGTCC
66 CGACCGAAGAGGCATAATGCGTAAGCCGAGGATCAACCCGGTCCCCCTCTGCATGCTGCCGGTCC
* * * *
30535705 TACTGCCACAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
131 TACTACAACAACCCTCGATCCGACTGGGGCTTACACATGGAATGAACTACCTATGCCTAAGCCAA
* * * *
30535770 CCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGAAGAGGCAGAATCCGTAAGCCGAGGATCGG
196 CCCACGAAACGAGCGTACGGGCGCTCAGTCGATCGAACAGGCAGAATCCGTAAGCCGAGAATCGG
* ***
30535835 CCTGATCCCCCCTACGTGCTACTGATCCTGCTGTCGTAACCCTCGATCTGGTTCAATCTTAGACT
261 CCTGATCCCCCCTACGTGCTACTGATCCTGCTGTCATAACCCTCGATCCAATTCAATCTTAGACT
30535900 AGG-AATGAACTCCGTATG
326 -GGCAATGAACTCCGTATG
* * *
30535918 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
30535983 CGGCCGGAGAGGCATAATGCGTATGTCGGGGATCAACTCGGTGCCCCTCCGCATGCTGCCGATCC
66 CGACCGAAGAGGCATAATGCGTAAGCCGAGGATCAACCCGGT---CC-CC-C-T-CTG-C-AT--
* * **
30536048 CGCTGCCGGTCCTACTACAACAACCCTCGATCC-AGTCGGGGCTTAGACATGGAATGAACTATGT
120 -GCTGCCGGTCCTACTACAACAACCCTCGATCCGACT-GGGGCTTACACATGGAATGAACTACCT
* * * * *
30536112 ATGCCTAAGCCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGTTGGACAGGTAGAATGCGT
183 ATGCCTAAG-CCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATCGAACAGGCAGAATCCGT
* * * * * *
30536177 AAGCCGAGAATCAGTCC-GGTCCCTCTTGCGTGCT-GTAGATCCTGCTG-CTATAACCCTCGATC
247 AAGCCGAGAATC-GGCCTGATCCCCCCTACGTGCTACT-GATCCTGCTGTC-ATAACCCTCGATC
** *
30536239 CAATTTGATCTTATACTGGCAATGAACTCCGTATG
309 CAATTCAATCTTAGACTGGCAATGAACTCCGTATG
30536274 C
1 C
30536275 ATAAGTCAAC
Statistics
Matches: 291, Mismatches: 48, Indels: 23
0.80 0.13 0.06
Matches are distributed among these distances:
343 91 0.31
346 2 0.01
347 2 0.01
348 1 0.00
349 1 0.00
350 3 0.01
351 1 0.00
352 2 0.01
354 2 0.01
355 63 0.22
356 120 0.41
357 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCATAATGCGTAAGCCGAGGATCAACCCGGTCCCCCTCTGCATGCTGCCGGTCC
TACTACAACAACCCTCGATCCGACTGGGGCTTACACATGGAATGAACTACCTATGCCTAAGCCAA
CCCACGAAACGAGCGTACGGGCGCTCAGTCGATCGAACAGGCAGAATCCGTAAGCCGAGAATCGG
CCTGATCCCCCCTACGTGCTACTGATCCTGCTGTCATAACCCTCGATCCAATTCAATCTTAGACT
GGCAATGAACTCCGTATG
Found at i:30536594 original size:26 final size:26
Alignment explanation
Indices: 30536565--30536617 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30536555 CAGTTCCGAT
30536565 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
30536591 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
30536617 C
1 C
30536618 CTAAACAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:30537455 original size:26 final size:26
Alignment explanation
Indices: 30537426--30537478 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30537416 CCAATCTGAT
30537426 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
30537452 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
30537478 C
1 C
30537479 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30538517 original size:26 final size:26
Alignment explanation
Indices: 30538479--30538531 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30538469 GGCTCAAACT
*
30538479 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30538505 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30538531 C
1 C
30538532 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30538851 original size:26 final size:26
Alignment explanation
Indices: 30538822--30538874 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
30538812 CCGATTCGAT
30538822 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30538848 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30538874 C
1 C
30538875 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30539348 original size:158 final size:158
Alignment explanation
Indices: 30539057--30539887 Score: 563
Period size: 158 Copynumber: 5.2 Consensus size: 158
30539047 ACTCCGTATG
** * **
30539057 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCTAGCGCT-AAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA-
* * * * * * *
30539121 CTGATCGGAGAGGCAGAATGCGTAAG-TCGGGGACCGGCCCGATCCCCCTTACGTGCTATCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGGTCCCCCCTACGTGCTATCGATC
* *
30539185 TTACTGTCGCAACCCTCGATCCGGTCTGAT
129 TTACTGTCGCAACCCTCGGTCCGGTCCGAT
* * *
30539215 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGACATGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
* *
30539280 CGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCTACGTGTTACCGGTCCT
66 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTAC--G-T----G--CT
* * * * * *
30539345 ACTGTTGGTCCTACTGCCGCAACCCTCGGTTCGGTCCGTT
122 A---TCGATCTTACTGTCGCAACCCTCGGTCCGGTCCGAT
* * * * *
30539385 CTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCAACGAAATGAGCGTGCGGCCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
* * * * *
30539450 CAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGGTCCCCCCTACATGCTGTCAATCTT
66 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCTT
* * * *
30539515 ACTGCCGTAACCCTCGGTGCAGTCCGAT
131 ACTGTCGCAACCCTCGGTCCGGTCCGAT
* * ** * * * * * *
30539543 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACAAAACGAGTGTACGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
* * * * * * * * * * ** **
30539608 CGGCCGAAAAGGCATAATGAGTAAGCCGAGGATTGGCCCAATCCCCCTCTGTGTGCTATC-AGTC
66 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCC-CTACGTGCTATCGA-TC
* * * * * * ** **
30539672 CTGCTGCCACAACCCTCAGTCTGGTTGGGG
129 TTACTGTCGCAACCCTCGGTCCGGTCCGAT
** * * * * * * *
30539702 CTTAGACACGAAATGGAACTCCATATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGACTGGGAAT-GAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
* * * * * * * * * *
30539767 TCGATCGGAGAGGCAGAATGCACAAGCCGAGGATC-AGCCCGATCCCTCTTGCGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGGTCCCCCCTACGTGCTATCGATC
* * ** * * * *
30539831 CTGCTACCGTAACCCTCTGTCTGGTCTGAT
129 TTACTGTCGCAACCCTCGGTCCGGTCCGAT
*
30539861 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
30539888 TTAGACTGGG
Statistics
Matches: 522, Mismatches: 132, Indels: 38
0.75 0.19 0.05
Matches are distributed among these distances:
158 221 0.42
159 86 0.16
160 74 0.14
161 3 0.01
163 1 0.00
165 1 0.00
167 4 0.01
170 132 0.25
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCTT
ACTGTCGCAACCCTCGGTCCGGTCCGAT
Found at i:30539474 original size:170 final size:170
Alignment explanation
Indices: 30539186--30539500 Score: 477
Period size: 170 Copynumber: 1.9 Consensus size: 170
30539176 CTATCGATCT
* * * *
30539186 TACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 TACTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
30539251 CCCATGACATGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGA
66 CCAACGAAATGAGCGTGCGGCCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAA
*
30539316 CCTGGTCCCCCCTACGTGTTACCGGTCCTACTGTTGGTCC
131 CCCGGTCCCCCCTACGTGTTACCGGTCCTACTGTTGGTCC
* * * *
30539356 TACTGCCGCAACCCTCGGTTCGGTCCGTTCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAA
1 TACTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
30539421 CCAACGAAATGAGCGTGCGGCCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAA
66 CCAACGAAATGAGCGTGCGGCCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAA
30539486 CCCGGTCCCCCCTAC
131 CCCGGTCCCCCCTAC
30539501 ATGCTGTCAA
Statistics
Matches: 128, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
170 128 1.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (170 bp):
TACTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCAACGAAATGAGCGTGCGGCCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAA
CCCGGTCCCCCCTACGTGTTACCGGTCCTACTGTTGGTCC
Found at i:30539890 original size:26 final size:26
Alignment explanation
Indices: 30539861--30539913 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30539851 CTGGTCTGAT
*
30539861 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30539887 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30539913 C
1 C
30539914 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30546419 original size:26 final size:26
Alignment explanation
Indices: 30546390--30546442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30546380 CCGGTTTGAT
*
30546390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30546416 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30546442 C
1 C
30546443 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30547097 original size:159 final size:159
Alignment explanation
Indices: 30546805--30547277 Score: 355
Period size: 159 Copynumber: 3.0 Consensus size: 159
30546795 GCTTAGCCAT
* * * *
30546805 GGAATAAACTCTGTATGCCTAAGCAAACCCACGAAACGAACGTGCGGGCGCTCAGTCGACCGGAG
1 GGAATAAACTCTGTATGCCTAAGCAAACCCACGAAACGAACGTGCGGGCACTCAGCCGACCGAAA
* * ** * *
30546870 AGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCTCCCCTGTGTGCTGTTGATCCTGCTGTCGC
66 AGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCTCCCCTGGGTGCTGTCGATCCCCCTGCCAC
30546935 AACCCTCGGTTCGATCCGATCTTAGACTG
131 AACCCTCGGTTCGATCCGATCTTAGACTG
* * * * * *
30546964 GGAATGAACTCTGTATGCCTAATTC-AACCCATGAAATGAACGTGTGGGCACTGAGCC-AGCCGA
1 GGAATAAACTCTGTATGCCTAA-GCAAACCCACGAAACGAACGTGCGGGCACTCAGCCGA-CCGA
* * * * * * *
30547027 AAAGGCATAATGCGCAAGTCGAGGTTCGGCCCGATCC-CCATCTGGGTGCTGTCGGTCCCCCTGC
64 AAAGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCTCC-CCTGGGTGCTGTCGATCCCCCTGC
* * ** ** * **
30547091 CACAACCCTCGGTCCGGTTGGGGCTTAAACAC
128 CACAACCCTCGGTTCGATCCGATCTTAGACTG
* ** * * ** * * * * *
30547123 GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTACGGGCGCTCAGCCGATCGGAG
1 GGAATAAACTCTGTATGCCTAAGCAAACCCACGAAACGAACGTGCGGGCACTCAGCCGACCGAAA
* * ** * * ** ** * *
30547188 AGGTAGAATGCGTAAGCCGGGGATTGGCCCGA---TCCCCTACGTGCTGTCGATCCTGCTGTCGC
66 AGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCTCCCCTGGGTGCTGTCGATCCCCCTGCCAC
* *
30547250 AACCCTCGGTCCGGTCCGATCTTAGACT
131 AACCCTCGGTTCGATCCGATCTTAGACT
30547278 AAGAATTAAC
Statistics
Matches: 240, Mismatches: 68, Indels: 15
0.74 0.21 0.05
Matches are distributed among these distances:
156 41 0.17
157 2 0.01
158 4 0.02
159 191 0.80
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GGAATAAACTCTGTATGCCTAAGCAAACCCACGAAACGAACGTGCGGGCACTCAGCCGACCGAAA
AGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCTCCCCTGGGTGCTGTCGATCCCCCTGCCAC
AACCCTCGGTTCGATCCGATCTTAGACTG
Found at i:30552749 original size:159 final size:159
Alignment explanation
Indices: 30552458--30552943 Score: 392
Period size: 159 Copynumber: 3.1 Consensus size: 159
30552448 GCCTAGACAT
* *
30552458 GGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGCCGATCGGAG
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCGCTCAGCCGATCGGAG
* ** * *
30552523 AGGTAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTTTGTGCTGTCGATCCTACTGCTAC
66 AGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCCACTGCCAC
30552588 AACCCTCAGTTCGGTCCGATCTTAGATTG
131 AACCCTCAGTTCGGTCCGATCTTAGATTG
* ** ** *
30552617 GGAATAAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTACAGGCGCTGAGCC-AGTCGGA
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCGCTCAGCCGA-TCGGA
* *** * *
30552681 GAGGCATAATGTGTAAGCTGGGGATC-AGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCC
65 GAGGCAGAATGCACAAGCTGGGGATCGA-CCCGGTCCCCCTCTACGTGCTGTCGATCCCACTGCC
* ** ** *
30552745 ACAACCCTCA-ATCTGGTTGGGGCTCAGATAT-
129 ACAACCCTCAGTTC-GGTCCGATCTTAGAT-TG
** * * ** * * * ** *
30552776 GGAATTTACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGGCCAGAG
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCGCTCAGCCGATCGGAG
* * ** ** * * * * *
30552841 AGACAGAATGCATAAGCCAGGGATCGGTCCGATCCCCC-CTGCGTGCT-ACTGATCCTACTGCCG
66 AGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTC-GATCCCACTGCCA
* * * *
30552904 CAACCCTCGGTCCGG-CTTGATCTTAGACTG
130 CAACCCTCAGTTCGGTC-CGATCTTAGATTG
*
30552934 GGAATGAACT
1 GGAATAAACT
30552944 CCATATGCTT
Statistics
Matches: 252, Mismatches: 65, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 45 0.18
159 204 0.81
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
GGAATAAACTTCGTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCGCTCAGCCGATCGGAG
AGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCCACTGCCAC
AACCCTCAGTTCGGTCCGATCTTAGATTG
Found at i:30554042 original size:159 final size:157
Alignment explanation
Indices: 30553672--30554166 Score: 428
Period size: 158 Copynumber: 3.1 Consensus size: 157
30553662 AACTCCGTAT
** * * *
30553672 GCTTAGACATTAAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCG-GACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-CTGGCGCTAA
* * * ** *
30553736 GTCGATCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTTGATC
65 GTCGGTCGAAGAGGCAAAATGCGCAAGTCGAGGATC-GCCCGGTCCCCCCTACGTGCTGTCGATC
** * * *
30553801 CTGCTGTCGCAACCCTCGGTCCGATTTGA
129 CTGCTACCACAACCCTCGGTCCGACTAGA
* * * * *
30553830 TCTTAGAC-TGGGAATAAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCTGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCTGGCGCTAA
* * * *
30553894 GTCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGT
65 GTCGGTCGAAGAGGCAAAATGCGCAAGTCGAGGATC-GCCCGGTCCCCC-CTACGTGCTGTCGAT
* * *
30553959 -CTCGCTACCACAACCCTCGGTCTGGCTAGG
128 CCT-GCTACCACAACCCTCGGTCCGACTAGA
* ** * *
30553989 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGGGCGTG-TAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCT-GGCGCT-A
* * * * ** *
30554053 A-CCGGTCAAAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGGTCCCCCCTGTGTGCCGTCGAT
64 AGTCGGTCGAAGAGGCAAAATGCGCAAGTCGAGGATCG-CCCGGTCCCCCCTACGTGCTGTCGAT
* ** * *
30554117 CCTGCTATCGTAACCCTCGATCTGATCT-GA
128 CCTGCTACCACAACCCTCGGTCCGA-CTAGA
*
30554147 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
30554167 TTGTACGCTT
Statistics
Matches: 270, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 142 0.53
159 123 0.46
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCTGGCGCTAAG
TCGGTCGAAGAGGCAAAATGCGCAAGTCGAGGATCGCCCGGTCCCCCCTACGTGCTGTCGATCCT
GCTACCACAACCCTCGGTCCGACTAGA
Found at i:30554695 original size:158 final size:158
Alignment explanation
Indices: 30554295--30554708 Score: 417
Period size: 159 Copynumber: 2.6 Consensus size: 158
30554285 CAGCCCGATC
* * * * * * * **
30554295 CCCCTCTGCGTGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGT-TGGGGCTTAGACATGGAA
1 CCCCTCTGCATGCTGCCGATCCTGCTACTAGAACCCACGATCCAGTCT-GATCTTAGAC-TGGAA
* * * * *
30554359 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCTGTCAGAGAGGA
64 TGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGCGCTCAGTCCGACAGAGAGGA
* *
30554424 AGAATATGCAAGCTAGGGATCGATCCAGTG
129 AGAATATGCAAGCTAGGGATCAACCCAGTG
* * * * * *
30554454 CCCCTTTTCATGCTGCCGATCTTGCTGCTAGAACCCTCGGTCCAGTCTGATCTTAGACTAGGAAT
1 CCCCTCTGCATGCTGCCGATCCTGCTACTAGAACCCACGATCCAGTCTGATCTTAGACT-GGAAT
* * *
30554519 GAACTCCGTATGCCTAAGTCAACCTACGAAACGAATGTGCGGGCGCTCAG-CCGACCGAAGAGGC
65 GAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGCGCTCAGTCCGACAG-AGAGGA
* *
30554583 AGAATGTGCAAG-TCAGGGATCAACCCGGT-
129 AGAATATGCAAGCT-AGGGATCAACCCAGTG
* * * *
30554612 CTCCC-CTGCGTGCTGTCGATCCTGCTACTATAACCCACGAT-CTGATCTGATCTTAGACTGGGA
1 C-CCCTCTGCATGCTGCCGATCCTGCTACTAGAACCCACGATCCAG-TCTGATCTTAGACT-GGA
**
30554675 ATGAACTCTATATGCCTAAGTCAACCTACGAAAC
63 ATGAACTCCGTATGCCTAAGTCAACCTACGAAAC
30554709 AAGCGTATGG
Statistics
Matches: 213, Mismatches: 36, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.01
158 83 0.39
159 127 0.60
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (158 bp):
CCCCTCTGCATGCTGCCGATCCTGCTACTAGAACCCACGATCCAGTCTGATCTTAGACTGGAATG
AACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGCGCTCAGTCCGACAGAGAGGAAG
AATATGCAAGCTAGGGATCAACCCAGTG
Found at i:30554846 original size:157 final size:158
Alignment explanation
Indices: 30554502--30554846 Score: 376
Period size: 158 Copynumber: 2.2 Consensus size: 158
30554492 GGTCCAGTCT
* * * * *
30554502 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAATGTGCGGGCGCTC
1 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAACGTACGGGCACTC
* * * ** *
30554567 AGCCGACCGAAGAGGCAGAATGTGCAAGTCAGGGATCAACCCGGTCTCCCCTGCGTGCTGTCGAT
66 AGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCTCCCCTGCGTGCTACCAAT
* * *
30554632 CCTGCTACTATAACCCACGATCTGATCT
131 CCTACTACTATAACCCACGAGCTGATCC
* * *
30554660 GATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCTACGAAAC-AAGCGTATGGGCATT
1 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAA-CGTACGGGCACT
* ** ** * *
30554724 GAGTGGACC-AGAGAGGCAGAATGCGCAAGCCAGGGATC-GGCCGATC-CCTCTTGTGTGCTACC
65 CAGCCGACCGA-AGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCTCC-CCTGCGTGCTACC
* * *
30554786 AATCCTACTA-TCGTAACCCTCGGGCTGATCC
128 AATCCTACTACT-ATAACCCACGAGCTGATCC
30554817 GATCTTAGACTGGGAATGAACTCTGTATGC
1 GATCTTAGACTGGGAATGAACTCTGTATGC
30554847 TTAGACTGAG
Statistics
Matches: 155, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
156 3 0.02
157 68 0.44
158 84 0.54
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (158 bp):
GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAACGTACGGGCACTC
AGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCTCCCCTGCGTGCTACCAAT
CCTACTACTATAACCCACGAGCTGATCC
Done.