Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 33 of 402
Found at i:6934854 original size:29 final size:24
Alignment explanation
Indices: 6934800--6934863 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
6934790 TAAAATTATT
*
6934800 ATATGATTTTATATTTATTGCATA
1 ATATGATATTATATTTATTGCATA
6934824 ATATGATATTATATGTTATTGCATA
1 ATATGATATTATAT-TTATTGCATA
*
6934849 AT-TAATATTATATTT
1 ATATGATATTATATTT
6934864 GAATTATATC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 2 0.05
24 23 0.62
25 12 0.32
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (24 bp):
ATATGATATTATATTTATTGCATA
Found at i:6935021 original size:20 final size:19
Alignment explanation
Indices: 6934970--6935083 Score: 105
Period size: 18 Copynumber: 6.2 Consensus size: 19
6934960 ATTTGCTTGA
**
6934970 ATGAT-ATTATATATTTAT
1 ATGATAATTATATATTTGC
*
6934988 ATGATTATT-T-TATTTGC
1 ATGATAATTATATATTTGC
*
6935005 ATGGTAATTAATATATTTGC
1 ATGATAATT-ATATATTTGC
**
6935025 ATGAT-ATTATATATTTAT
1 ATGATAATTATATATTTGC
*
6935043 ATGATTATTAT-TA-TTGC
1 ATGATAATTATATATTTGC
6935060 ATGATAATTAATATATTTGC
1 ATGATAATT-ATATATTTGC
6935080 ATGA
1 ATGA
6935084 CATTCTTGCA
Statistics
Matches: 78, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
17 22 0.28
18 23 0.29
19 14 0.18
20 19 0.24
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.51
Consensus pattern (19 bp):
ATGATAATTATATATTTGC
Found at i:6935033 original size:55 final size:55
Alignment explanation
Indices: 6934970--6935083 Score: 203
Period size: 55 Copynumber: 2.1 Consensus size: 55
6934960 ATTTGCTTGA
*
6934970 ATGATATTATATATTTATATGATTATT-TTATTTGCATGGTAATTAATATATTTGC
1 ATGATATTATATATTTATATGATTATTATTA-TTGCATGATAATTAATATATTTGC
6935025 ATGATATTATATATTTATATGATTATTATTATTGCATGATAATTAATATATTTGC
1 ATGATATTATATATTTATATGATTATTATTATTGCATGATAATTAATATATTTGC
6935080 ATGA
1 ATGA
6935084 CATTCTTGCA
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
55 54 0.95
56 3 0.05
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.51
Consensus pattern (55 bp):
ATGATATTATATATTTATATGATTATTATTATTGCATGATAATTAATATATTTGC
Found at i:6935049 original size:16 final size:18
Alignment explanation
Indices: 6934970--6935083 Score: 69
Period size: 20 Copynumber: 6.2 Consensus size: 18
6934960 ATTTGCTTGA
6934970 ATGAT-ATTATATATTT-
1 ATGATGATTATATATTTC
*
6934986 AT-ATGATTATTTTATTTGC
1 ATGATGATTA-TATATTT-C
* *
6935005 ATGGTAATTAATATATTTGC
1 ATGATGATT-ATATATTT-C
6935025 ATGAT-ATTATATATTT-
1 ATGATGATTATATATTTC
*
6935041 AT-ATGATTATTATTATTGC
1 ATGATGATTA-TA-TATTTC
*
6935060 ATGATAATTAATATATTTGC
1 ATGATGATT-ATATATTT-C
6935080 ATGA
1 ATGA
6935084 CATTCTTGCA
Statistics
Matches: 77, Mismatches: 8, Indels: 22
0.72 0.07 0.21
Matches are distributed among these distances:
15 4 0.05
16 12 0.16
17 8 0.10
18 12 0.16
19 11 0.14
20 28 0.36
21 2 0.03
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.51
Consensus pattern (18 bp):
ATGATGATTATATATTTC
Found at i:6938359 original size:17 final size:16
Alignment explanation
Indices: 6938327--6938361 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
6938317 TCCCTATCTC
*
6938327 TTTATTTTTATTATAG
1 TTTATATTTATTATAG
6938343 TTTATATTTACTTATAG
1 TTTATATTTA-TTATAG
6938360 TT
1 TT
6938362 CATCAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (16 bp):
TTTATATTTATTATAG
Found at i:6940977 original size:16 final size:16
Alignment explanation
Indices: 6940958--6940988 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6940948 TATGATAACA
*
6940958 TATCTTTAACAATTGG
1 TATCCTTAACAATTGG
6940974 TATCCTTAACAATTG
1 TATCCTTAACAATTG
6940989 ATATGAGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (16 bp):
TATCCTTAACAATTGG
Found at i:6941688 original size:13 final size:13
Alignment explanation
Indices: 6941670--6941694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6941660 TTAAGAGAGA
6941670 GTTTTTCAAAATG
1 GTTTTTCAAAATG
6941683 GTTTTTCAAAAT
1 GTTTTTCAAAAT
6941695 CTTAAATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (13 bp):
GTTTTTCAAAATG
Found at i:6943887 original size:22 final size:22
Alignment explanation
Indices: 6943822--6943920 Score: 78
Period size: 22 Copynumber: 4.6 Consensus size: 22
6943812 ATTTAAATGC
*
6943822 AATTAGT-ATAACTTAATAAT-
1 AATTAGTGATAACTTAATAGTA
** *
6943842 AATTA-TCGATAACTTAGCATTA
1 AATTAGT-GATAACTTAATAGTA
6943864 AATTAGTGATAACTTAATAGTA
1 AATTAGTGATAACTTAATAGTA
* * * *
6943886 AATGAATGATAATTTAATAGTT
1 AATTAGTGATAACTTAATAGTA
* *
6943908 AATAATTGATAAC
1 AATTAGTGATAAC
6943921 CTTTTAGTAA
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 5 0.08
21 10 0.16
22 45 0.73
23 1 0.02
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.37
Consensus pattern (22 bp):
AATTAGTGATAACTTAATAGTA
Found at i:6944091 original size:11 final size:11
Alignment explanation
Indices: 6944075--6944130 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
6944065 TATTGATAAG
6944075 TAATAAATCAA
1 TAATAAATCAA
* *
6944086 TAATAACTTAA
1 TAATAAATCAA
* *
6944097 TAATAAATTAG
1 TAATAAATCAA
* *
6944108 TGATAATTCAA
1 TAATAAATCAA
6944119 TAATAAATCAA
1 TAATAAATCAA
6944130 T
1 T
6944131 TTCAGTTTAA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.34
Consensus pattern (11 bp):
TAATAAATCAA
Found at i:6944102 original size:22 final size:22
Alignment explanation
Indices: 6944075--6944130 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
6944065 TATTGATAAG
6944075 TAATAAATCAATAATAACTT-AA
1 TAATAAATCAATAATAA-TTCAA
* * *
6944097 TAATAAATTAGTGATAATTCAA
1 TAATAAATCAATAATAATTCAA
6944119 TAATAAATCAAT
1 TAATAAATCAAT
6944131 TTCAGTTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.34
Consensus pattern (22 bp):
TAATAAATCAATAATAATTCAA
Found at i:6944180 original size:22 final size:22
Alignment explanation
Indices: 6944155--6944209 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
6944145 AATTAATTGA
6944155 TAGTAGTAAATCACA-AATAAAT
1 TAGTAGTAAATCA-ATAATAAAT
*
6944177 TAGTAGTAAATCAATTATAAAT
1 TAGTAGTAAATCAATAATAAAT
*
6944199 TAGAAGTAAAT
1 TAGTAGTAAAT
6944210 GATTGATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 1 0.03
22 29 0.97
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.31
Consensus pattern (22 bp):
TAGTAGTAAATCAATAATAAAT
Found at i:6944428 original size:22 final size:21
Alignment explanation
Indices: 6944403--6944473 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 21
6944393 AATTTTGAAA
*
6944403 TAAATAATTGAAAAT-TAAGTAG
1 TAAATAA-TGAAAATATAA-TAC
6944425 TAAATTAATGAAAATATAATAC
1 TAAA-TAATGAAAATATAATAC
* *
6944447 TAAATACATAAAAATATAATAA
1 TAAATA-ATGAAAATATAATAC
6944469 TAAAT
1 TAAAT
6944474 CAGTGATAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
21 2 0.05
22 35 0.81
23 6 0.14
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (21 bp):
TAAATAATGAAAATATAATAC
Found at i:6944488 original size:22 final size:21
Alignment explanation
Indices: 6944251--6944495 Score: 66
Period size: 22 Copynumber: 11.2 Consensus size: 21
6944241 AACTTAAAAG
* *
6944251 TAAATCAAT-ATAATTTAGTAG
1 TAAATC-ATGATAATTTAATAA
* **
6944272 TAAATCATTGAAAACATAATAA
1 TAAATCA-TGATAATTTAATAA
* * *
6944294 TTAATCAGTGATAACTTAATAG
1 TAAATCA-TGATAATTTAATAA
6944316 TAAATCATGCATAATTTAAT-A
1 TAAATCATG-ATAATTTAATAA
* * * **
6944337 TTAAGCAATAATAATTTGGTAA
1 TAAATC-ATGATAATTTAATAA
* * * *
6944359 TGAATTATAGATAATCTAATGA
1 TAAATCAT-GATAATTTAATAA
** *
6944381 TAAATTGGTGATAATTTTGA-AA
1 TAAA-TCATGATAA-TTTAATAA
* * *
6944403 TAAATAATTGA-AAATTAAGTAG
1 TAAATCA-TGATAATTTAA-TAA
* * * *
6944425 TAAATTAATGAAAATATAATAC
1 TAAA-TCATGATAATTTAATAA
* * *
6944447 TAAATACATAAAAATATAATAA
1 TAAAT-CATGATAATTTAATAA
*
6944469 TAAATCAGTGATAATTTAATAG
1 TAAATCA-TGATAATTTAATAA
6944491 TAAAT
1 TAAAT
6944496 TATGGGTCAT
Statistics
Matches: 162, Mismatches: 47, Indels: 29
0.68 0.20 0.12
Matches are distributed among these distances:
20 4 0.02
21 29 0.18
22 116 0.72
23 13 0.08
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.35
Consensus pattern (21 bp):
TAAATCATGATAATTTAATAA
Found at i:6944864 original size:53 final size:54
Alignment explanation
Indices: 6944768--6944931 Score: 139
Period size: 53 Copynumber: 3.1 Consensus size: 54
6944758 ACATTACAAT
* *
6944768 TATTATATTAATAAAATAATAGTTTTATTGTATAAATATTATATTAATAAATAA
1 TATTATATTAATAAAATAATAGATTTATTATATAAATATTATATTAATAAATAA
* * *
6944822 TATTATATTCAT-AAATAAATA-ATTTATTATATTAATCA-TATATTAGTAAATAA
1 TATTATATTAATAAAAT-AATAGATTTATTATATAAAT-ATTATATTAATAAATAA
* * * *
6944875 TA-TAT-TAAAT-CAATATTACA-TTATTAATATAATATATTA-A-TAATAAAATAA
1 TATTATATTAATAAAATAATAGATTTATT-ATATAA-ATATTATATTAAT-AAATAA
6944926 TATTAT
1 TATTAT
6944932 TATAGTTTAA
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
50 11 0.12
51 22 0.24
52 10 0.11
53 32 0.35
54 16 0.18
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (54 bp):
TATTATATTAATAAAATAATAGATTTATTATATAAATATTATATTAATAAATAA
Found at i:6944919 original size:11 final size:11
Alignment explanation
Indices: 6944903--6945123 Score: 58
Period size: 11 Copynumber: 20.0 Consensus size: 11
6944893 CATTATTAAT
6944903 ATAATATATTA
1 ATAATATATTA
* *
6944914 ATAATAAAATA
1 ATAATATATTA
6944925 ATATTATTATAGTTTA
1 ATA--A-TATA--TTA
6944941 ATAATAGT-TTA
1 ATAATA-TATTA
*
6944952 ATAA-ATAAT-
1 ATAATATATTA
*
6944961 ATAATATATTG
1 ATAATATATTA
* *
6944972 TTAACATATTA
1 ATAATATATTA
6944983 ATAAATAATATT-
1 AT-AAT-ATATTA
6944995 AT-AT-TATTCA
1 ATAATATATT-A
6945005 TATAATATATT-
1 -ATAATATATTA
*
6945016 -T-ATTTATTA
1 ATAATATATTA
*
6945025 ATATACTATTTTA
1 ATA-A-TATATTA
*
6945038 ATAATATAATA
1 ATAATATATTA
*
6945049 AT-AT-TTTTA
1 ATAATATATTA
* *
6945058 TTAATATAATA
1 ATAATATATTA
*
6945069 AT-ATTTATTA
1 ATAATATATTA
6945079 AT-ATATTATTTA
1 ATAATA-TA-TTA
* *
6945091 TTAATA-AATA
1 ATAATATATTA
6945101 AT-ATATATTAA
1 ATAATATATT-A
6945112 ATAAATATATTA
1 AT-AATATATTA
6945124 TTTTATTATT
Statistics
Matches: 151, Mismatches: 29, Indels: 59
0.63 0.12 0.25
Matches are distributed among these distances:
8 10 0.07
9 13 0.09
10 28 0.19
11 47 0.31
12 13 0.09
13 30 0.20
14 5 0.03
16 5 0.03
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (11 bp):
ATAATATATTA
Found at i:6945037 original size:20 final size:20
Alignment explanation
Indices: 6944978--6945089 Score: 78
Period size: 21 Copynumber: 5.8 Consensus size: 20
6944968 ATTGTTAACA
*
6944978 TATTAATA-AATAATATTATAT
1 TATTAATATAAT-ATTTTAT-T
*
6944999 TATTCATATAATATATTTATT
1 TATTAATATAATAT-TTTATT
*
6945020 TATTAATATACTATTTTA--
1 TATTAATATAATATTTTATT
*
6945038 -A-TAATATAATAATATT-TT
1 TATTAATATAAT-ATTTTATT
*
6945056 TATTAATATAATA--ATATT
1 TATTAATATAATATTTTATT
*
6945074 TATTAATATATTATTT
1 TATTAATATAATATTT
6945090 ATTAATAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 21
0.71 0.09 0.21
Matches are distributed among these distances:
16 8 0.11
17 6 0.08
18 14 0.19
19 2 0.03
20 13 0.18
21 22 0.31
22 7 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
TATTAATATAATATTTTATT
Found at i:6945077 original size:54 final size:56
Alignment explanation
Indices: 6944981--6945501 Score: 188
Period size: 53 Copynumber: 9.4 Consensus size: 56
6944971 GTTAACATAT
*
6944981 TAATAAATAATATTATATTATTCATATAATATATTTATTTATTAATATACTATTTTAA
1 TAATAAATAATATTATATTATTAATATAATATA-TTATTTATTAATATACTA-TTTAA
* *
6945039 TAATATAATAATATT-T-TTATTAATATAATA-A-TATTTATTAATATATTATTTAT
1 TAATA-AATAATATTATATTATTAATATAATATATTATTTATTAATATACTATTTAA
* * *
6945092 TAATAAATAATA-TATATTA--AATA-AATATATTATTTTATTATTTTATTAATATTAA
1 TAATAAATAATATTATATTATTAATATAATATATTA-TTTATTAATATACT-AT-TTAA
* * * ** * * * *
6945147 -AATTAATAAAACTATTAAAATT-ATATTATAAATTA-TTGTT-ATATTATTA-TTAA
1 TAATAAATAATATTA-TATTATTAATATAATATATTATTTATTAATA-TACTATTTAA
* * * * * *
6945200 AAAT-TATAATATCATA-TATT-ATA-ACATATTATTATTTATTAAAAATATTATTTCAT
1 TAATAAATAATATTATATTATTAATATA-ATA-TATTATTTATT-AATATACTATTT-AA
* * * *
6945256 TAATATATAATATTATGATAAAT-ATATAA-ATA-TATTTATTTAATAATA-TATTTAT
1 TAATAAATAATATTAT-ATTATTAATATAATATATTATTTA-TTAAT-ATACTATTTAA
* * * * * *
6945311 TAAT-AAT-ATATTA-ATAAATAATAT--TATATTATTAATACAATATATTATTTAT
1 TAATAAATAATATTATATTATTAATATAATATATTATTTAT-TAATATACTATTTAA
* * * ** *
6945363 TAATATATGAT-TAATA-TA-GCATATTATTATATTATTTATTAATATATTCTATATTAA
1 TAATAAATAATATTATATTATTAATA-TAATATATTATTTATTAATATA--CTAT-TTAA
* * * *
6945420 TTAAATATAATAATATT-TATTAATATATTATTAATATAATATATTAATAA-ATAAC-ATTATAT
1 -T-AATA-AATAATATTATATT-AT-TAATA-TAATATATTAT-TTATTAATAT-ACTATT-TAA
6945482 TAATAAATAATATTATATTA
1 TAATAAATAATATTATATTA
6945502 GTAAATATTA
Statistics
Matches: 357, Mismatches: 52, Indels: 107
0.69 0.10 0.21
Matches are distributed among these distances:
50 4 0.01
51 28 0.08
52 42 0.12
53 50 0.14
54 46 0.13
55 28 0.08
56 32 0.09
57 36 0.10
58 16 0.04
59 29 0.08
60 15 0.04
61 4 0.01
62 5 0.01
63 1 0.00
64 14 0.04
65 7 0.02
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.50
Consensus pattern (56 bp):
TAATAAATAATATTATATTATTAATATAATATATTATTTATTAATATACTATTTAA
Found at i:6945121 original size:13 final size:14
Alignment explanation
Indices: 6945095--6945123 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
6945085 TATTTATTAA
6945095 TAAATAATATATAT
1 TAAATAATATATAT
6945109 TAAATAA-ATATAT
1 TAAATAATATATAT
6945122 TA
1 TA
6945124 TTTTATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TAAATAATATATAT
Found at i:6945188 original size:13 final size:13
Alignment explanation
Indices: 6945159--6945206 Score: 50
Period size: 11 Copynumber: 4.0 Consensus size: 13
6945149 TTAATAAAAC
6945159 TATTA-AAATTA-
1 TATTATAAATTAT
6945170 TATTATAAATTAT
1 TATTATAAATTAT
*
6945183 TGTTAT--ATTAT
1 TATTATAAATTAT
*
6945194 TATTAAAAATTAT
1 TATTATAAATTAT
6945207 AATATCATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 14 0.47
12 6 0.20
13 10 0.33
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (13 bp):
TATTATAAATTAT
Found at i:6945324 original size:66 final size:63
Alignment explanation
Indices: 6945254--6945378 Score: 162
Period size: 64 Copynumber: 1.9 Consensus size: 63
6945244 ATATTATTTC
* *
6945254 ATTAATATATAATATTATGATAAATATATA-AATATATTTATTTAATAATATATTTATTAATAAT
1 ATTAATAAATAATATTAT-ATAAATA-ATACAATATA-TTATTTAATAATATA-TGATTAATAAT
6945318 AT
62 AT
* * *
6945320 ATTAATAAATAATATTATATTATTAATACAATATATTATTTATTAATATATGATTAATA
1 ATTAATAAATAATATTATATAAATAATACAATATATTATTTAATAATATATGATTAATA
6945379 TAGCATATTA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
63 8 0.15
64 17 0.32
65 11 0.21
66 17 0.32
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (63 bp):
ATTAATAAATAATATTATATAAATAATACAATATATTATTTAATAATATATGATTAATAATAT
Found at i:6945355 original size:21 final size:20
Alignment explanation
Indices: 6944766--6945514 Score: 158
Period size: 18 Copynumber: 37.2 Consensus size: 20
6944756 TGACATTACA
6944766 ATTATTATATTAATAAAATAAT
1 ATTATT-TATTAAT-AAATAAT
* * *
6944788 AGT-TTTATT-GTATA-AAT
1 ATTATTTATTAATAAATAAT
6944805 ATTA--TATTAATAAATAAT
1 ATTATTTATTAATAAATAAT
*
6944823 ATTATATTCATAAATAAATAAT
1 ATTAT-TT-ATTAATAAATAAT
* *
6944845 -TTATTATATTAATCATATATT
1 ATTATT-TATTAAT-AAATAAT
* * * *
6944866 AGTAAATAATATATTAAATCAAT
1 A-TTATTTAT-TAATAAAT-AAT
*
6944889 ATTACATTATTAAT--ATAAT
1 ATTA-TTTATTAATAAATAAT
*
6944908 A-TA-TTAATAATAAAATAAT
1 ATTATTTATTAAT-AAATAAT
*
6944927 ATTATTATAGTTTAAT-AATAGT
1 ATTATT-TA--TTAATAAATAAT
* * *
6944949 -TTAATAAATAATATAAT-AT
1 ATTATTTATTAATA-AATAAT
*
6944968 ATTGTTAACATATTAATAAATAAT
1 ATTATT----TATTAATAAATAAT
*
6944992 ATTATATTATTCATATAAT-AT
1 ATTAT-TTATTAATA-AATAAT
*
6945013 ATTTATTTATTAAT--ATACT
1 A-TTATTTATTAATAAATAAT
*
6945032 A-T-TTTAATAATATAATAAT
1 ATTATTTATTAATA-AATAAT
6945051 ATT-TTTATTAAT--ATAAT
1 ATTATTTATTAATAAATAAT
*
6945068 AATATTTA-T--T-AAT-AT
1 ATTATTTATTAATAAATAAT
6945083 ATTATTTATTAATAAATAAT
1 ATTATTTATTAATAAATAAT
6945103 A-TA--TATTAAATAAAT-AT
1 ATTATTTATT-AATAAATAAT
* * *
6945120 ATTATTTTATTATTTTATTAAT
1 ATTA-TTTATTA-ATAAATAAT
** *
6945142 ATTA-AAATTAATAAA-ACT
1 ATTATTTATTAATAAATAAT
6945160 ATTAAAATTATATT-ATAAATTATTGTTAT
1 ATT---ATT-TATTAATAAA-TA-----AT
*
6945189 ATTA-TTATTAAAAATTATAAT
1 ATTATTTATTAATAA--ATAAT
* * *
6945210 ATCATATATT-ATAACATATT
1 ATTATTTATTAATAA-ATAAT
6945230 ATTATTTA-T--TAAA-AAT
1 ATTATTTATTAATAAATAAT
*
6945246 ATTATTTCATTAATATATAAT
1 ATTATTT-ATTAATAAATAAT
* * *
6945267 ATTA-TGATAAATATATAA-
1 ATTATTTATTAATAAATAAT
*
6945285 ATATATTTATTTAATAATATATTT
1 AT-TATTTA-TTAATAA-ATA-AT
6945309 ATTAATAATATATTAATAAATAAT
1 ATT-AT--T-TATTAATAAATAAT
6945333 ATTATATTATTAATACAAT-AT
1 ATTAT-TTATTAATA-AATAAT
* *
6945354 ATTATTTATTAATATATGAT
1 ATTATTTATTAATAAATAAT
* * ** * *
6945374 -TAATATA-GCATATTATTAT
1 ATTATTTATTAATA-AATAAT
* **
6945393 ATTATTTATTAATATATTCT
1 ATTATTTATTAATAAATAAT
* *
6945413 A-TATTAATTAA-ATATAAT
1 ATTATTTATTAATAAATAAT
*
6945431 AATATTTATTAATATATTATTAAT
1 ATTATTTATTAATA-A--A-TAAT
* * *
6945455 ATAATATATTAATAAATAAC
1 ATTATTTATTAATAAATAAT
6945475 ATTA--TATTAATAAATAAT
1 ATTATTTATTAATAAATAAT
* *
6945493 ATTA--TATTAGTAAATATT
1 ATTATTTATTAATAAATAAT
6945511 ATTA
1 ATTA
6945515 GATTATTAGT
Statistics
Matches: 541, Mismatches: 92, Indels: 192
0.66 0.11 0.23
Matches are distributed among these distances:
15 10 0.02
16 31 0.06
17 26 0.05
18 84 0.16
19 70 0.13
20 83 0.15
21 82 0.15
22 61 0.11
23 24 0.04
24 44 0.08
25 8 0.01
26 11 0.02
27 3 0.01
29 4 0.01
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (20 bp):
ATTATTTATTAATAAATAAT
Found at i:6945356 original size:108 final size:107
Alignment explanation
Indices: 6945213--6945465 Score: 258
Period size: 108 Copynumber: 2.4 Consensus size: 107
6945203 TTATAATATC
*
6945213 ATATATT-ATAACATATTATTAT-TTATT-A-AAA-ATATTATTTCATTAATATATAATATTATG
1 ATATATTAATAA-ATATTATTATATTATTAATAAATATATTATTT-ATTAATATATAAT-TAAT-
6945273 ATA-AATATATAAATATATTTATTTAATAATATA-T-T-TATTAA-T-A
62 ATAGAATAT-T-AATATA-TTATTTAATAATATATTCTATATTAATTAA
* *
6945316 ATATATTAATAAATAATATTATATTATTAATACAATATATTATTTATTAATATATGATTAATATA
1 ATATATTAATAAATATTATTATATTATTAATA-AATATATTATTTATTAATATATAATTAATATA
* * *
6945381 GCATATTATTATATTATTTATTAATATATTCTATATTAATTAA
65 GAATATTAATATATTATTTAATAATATATTCTATATTAATTAA
* ** *
6945424 ATATAATAATATTTATTAATATATTATTAATATAATATATTA
1 ATATATTAATAAATATTATTATATTATTAATA-AATATATTA
6945466 ATAAATAACA
Statistics
Matches: 126, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
103 30 0.24
104 15 0.12
105 6 0.05
106 14 0.11
107 15 0.12
108 46 0.37
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (107 bp):
ATATATTAATAAATATTATTATATTATTAATAAATATATTATTTATTAATATATAATTAATATAG
AATATTAATATATTATTTAATAATATATTCTATATTAATTAA
Found at i:6945422 original size:19 final size:18
Alignment explanation
Indices: 6945395--6945468 Score: 71
Period size: 19 Copynumber: 4.1 Consensus size: 18
6945385 ATTATTATAT
*
6945395 TATTTATTAATATATTCTA
1 TATTTATTAATATATT-AA
* *
6945414 TATTAATTAAATATAATAA
1 TATTTATT-AATATATTAA
*
6945433 TATTTATTAATATATTAT
1 TATTTATTAATATATTAA
*
6945451 TA-ATA-TAATATATTAA
1 TATTTATTAATATATTAA
6945467 TA
1 TA
6945469 AATAACATTA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
16 12 0.26
17 2 0.04
18 10 0.22
19 15 0.33
20 7 0.15
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTTATTAATATATTAA
Found at i:6945449 original size:31 final size:30
Alignment explanation
Indices: 6945412--6945501 Score: 96
Period size: 31 Copynumber: 3.0 Consensus size: 30
6945402 TAATATATTC
6945412 TATATTAATTAAATATAATAATATTTATTAA
1 TATATTAATT-AATATAATAATATTTATTAA
* *
6945443 TATATT-ATTAATATAAT-ATATTAATAAA
1 TATATTAATTAATATAATAATATTTATTAA
*
6945471 TAACATTATATTAATA-AATAATATTATATTA
1 T-ATATTA-ATTAATATAATAATATT-TATTA
6945502 GTAAATATTA
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
28 10 0.20
29 12 0.24
30 6 0.12
31 18 0.37
32 3 0.06
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (30 bp):
TATATTAATTAATATAATAATATTTATTAA
Found at i:6945484 original size:108 final size:100
Alignment explanation
Indices: 6945254--6945501 Score: 232
Period size: 108 Copynumber: 2.4 Consensus size: 100
6945244 ATATTATTTC
* * * *
6945254 ATTAATATATAATATTATGATAAATATATAA-A-TATATTTATTTAATAATATATTTATTAATAA
1 ATTAATAAATAACA-TATGATTAATAAATAATATTATA-TTATTTAATAATATATTTATTAATAA
* *
6945317 TATATTAATAAATAATATTATATTATTAATACAATAT
64 TATAATAATAAATAATAATATATTATTAATACAATAT
* * * * * *
6945354 ATTATTTATTAATATATGATTAATATAGCATATTATTATATTATTTATTAATATATTCTATATTA
1 ATTAATAAATAACATATGATTAATA-A--ATAATATTATATTATTTAATAATATA-T-T-TATTA
** * *
6945419 ATTAAATATAATAATATTTATTAATATATTATTAATATAATAT
60 A-T-AATATAATAATAAATAATAATATATTATTAATACAATAT
6945462 ATTAATAAATAACATTAT-ATTAATAAATAATATTATATTA
1 ATTAATAAATAACA-TATGATTAATAAATAATATTATATTA
6945502 GTAAATATTA
Statistics
Matches: 118, Mismatches: 19, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
99 10 0.08
100 10 0.08
102 3 0.03
103 15 0.13
104 5 0.04
105 14 0.12
106 6 0.05
107 2 0.02
108 50 0.42
109 3 0.03
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (100 bp):
ATTAATAAATAACATATGATTAATAAATAATATTATATTATTTAATAATATATTTATTAATAATA
TAATAATAAATAATAATATATTATTAATACAATAT
Found at i:6945496 original size:13 final size:14
Alignment explanation
Indices: 6945423--6945487 Score: 57
Period size: 13 Copynumber: 4.7 Consensus size: 14
6945413 ATATTAATTA
6945423 AATATAATAATATT
1 AATATAATAATATT
*
6945437 TAT-TAATATATTATT
1 AATATAATA-A-TATT
6945452 AATATAAT-ATATT
1 AATATAATAATATT
*
6945465 AATA-AATAACATT
1 AATATAATAATATT
6945478 -ATATTAATAA
1 AATA-TAATAA
6945488 ATAATATTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
12 6 0.14
13 17 0.40
14 9 0.21
15 6 0.14
16 4 0.10
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
AATATAATAATATT
Found at i:6945514 original size:31 final size:31
Alignment explanation
Indices: 6945191--6945347 Score: 62
Period size: 28 Copynumber: 5.1 Consensus size: 31
6945181 ATTGTTATAT
* *
6945191 TATTATTAAAAATTATAATATCATATATTATAACA
1 TATTATT-AATATAATAATAT--TATATTATAA-A
* * *
6945226 TATTATTATTTATTAAAAATATTAT-TTCATTAA
1 TATTATTA-ATA-TAATAATATTATATT-ATAAA
* * *
6945259 TA-TA-TAATATTATGATA-AATA-TATAAA
1 TATTATTAATATAATAATATTATATTATAAA
* * *
6945286 TA-TATTTATTTAATAATA-TAT-TTATTAA
1 TATTATTAATATAATAATATTATATTATAAA
*
6945314 TAATATATTAATA-AATAATATTATATTATTAA
1 T-AT-TATTAATATAATAATATTATATTATAAA
6945346 TA
1 TA
6945348 CAATATATTA
Statistics
Matches: 92, Mismatches: 19, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
27 8 0.09
28 20 0.22
29 6 0.07
30 9 0.10
31 12 0.13
32 10 0.11
33 5 0.05
34 7 0.08
35 8 0.09
36 7 0.08
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (31 bp):
TATTATTAATATAATAATATTATATTATAAA
Found at i:6945647 original size:11 final size:11
Alignment explanation
Indices: 6945633--6945657 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6945623 CAATAAACTG
6945633 AAAATAAAACA
1 AAAATAAAACA
6945644 AAAATAAAACA
1 AAAATAAAACA
6945655 AAA
1 AAA
6945658 CAAAAGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAATAAAACA
Found at i:6945880 original size:19 final size:21
Alignment explanation
Indices: 6945837--6945893 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
6945827 AACTTAATTG
*
6945837 TAAATCATTTATAAATTAGTAA
1 TAAATCATTGATAAATTA-TAA
*
6945859 TAAATCATTGATAATTTAATAA
1 TAAATCATTGATAAATT-ATAA
6945881 TAAAAT-ATTGATA
1 T-AAATCATTGATA
6945894 GCTTAGTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 26 0.84
23 5 0.16
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (21 bp):
TAAATCATTGATAAATTATAA
Found at i:6945881 original size:22 final size:22
Alignment explanation
Indices: 6945748--6945884 Score: 105
Period size: 22 Copynumber: 6.2 Consensus size: 22
6945738 AAAGTAGTAG
*
6945748 TAAATCAATT-ATAACTTTTATAA
1 TAAATC-ATTAATAA-TTTAATAA
* * **
6945771 TAAATTATTAATAATTTAGTTG
1 TAAATCATTAATAATTTAATAA
* *
6945793 TAAATCACTAATAATTTAATGA
1 TAAATCATTAATAATTTAATAA
* * * **
6945815 TAAATAATTCATAACTTAATTG
1 TAAATCATTAATAATTTAATAA
* * *
6945837 TAAATCATTTATAAATTAGTAA
1 TAAATCATTAATAATTTAATAA
*
6945859 TAAATCATTGATAATTTAATAA
1 TAAATCATTAATAATTTAATAA
6945881 TAAA
1 TAAA
6945885 ATATTGATAG
Statistics
Matches: 88, Mismatches: 25, Indels: 3
0.76 0.22 0.03
Matches are distributed among these distances:
22 79 0.90
23 9 0.10
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (22 bp):
TAAATCATTAATAATTTAATAA
Found at i:6946285 original size:30 final size:30
Alignment explanation
Indices: 6946251--6946307 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
6946241 TTTAATTATA
6946251 AATCAATGATAA-TTTAATAGTAAATTAATT
1 AATCAATGATAACTTT-ATAGTAAATTAATT
* *
6946281 AATCATTTATAACTTTATAGTAAATTA
1 AATCAATGATAACTTTATAGTAAATTA
6946308 TCGATAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (30 bp):
AATCAATGATAACTTTATAGTAAATTAATT
Found at i:6946344 original size:22 final size:21
Alignment explanation
Indices: 6946276--6946349 Score: 58
Period size: 22 Copynumber: 3.4 Consensus size: 21
6946266 AATAGTAAAT
*
6946276 TAATTAATCATTTATAACTTTA
1 TAATAAATCA-TTATAACTTTA
* * * * *
6946298 TAGTAAATTATCGATAAATTGA
1 TAATAAATCAT-TATAACTTTA
6946320 TAATAAATCACTTATAACTTTA
1 TAATAAATCA-TTATAACTTTA
*
6946342 TAACAAAT
1 TAATAAAT
6946350 TATCAGTAAT
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (21 bp):
TAATAAATCATTATAACTTTA
Found at i:6946371 original size:22 final size:22
Alignment explanation
Indices: 6946346--6946389 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
6946336 ACTTTATAAC
**
6946346 AAATTATCAGTAATTTAATAGT
1 AAATTATCAACAATTTAATAGT
6946368 AAATTATCAACAATTTAATAGT
1 AAATTATCAACAATTTAATAGT
6946390 GAATCAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (22 bp):
AAATTATCAACAATTTAATAGT
Found at i:6946371 original size:44 final size:44
Alignment explanation
Indices: 6946276--6946371 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
6946266 AATAGTAAAT
* * ** *
6946276 TAATTAATCATTTATAACTTTATAGTAAATTATCGATAAATTGA
1 TAATAAATCACTTATAACTTTATAACAAATTATCGATAAATTAA
*
6946320 TAATAAATCACTTATAACTTTATAACAAATTATC-AGTAATTTAA
1 TAATAAATCACTTATAACTTTATAACAAATTATCGA-TAAATTAA
*
6946364 TAGTAAAT
1 TAATAAAT
6946372 TATCAACAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 1 0.02
44 43 0.98
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (44 bp):
TAATAAATCACTTATAACTTTATAACAAATTATCGATAAATTAA
Found at i:6946417 original size:22 final size:22
Alignment explanation
Indices: 6946391--6946456 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
6946381 TTTAATAGTG
6946391 AATCAATTATTAATTAGTAATA
1 AATCAATTATTAATTAGTAATA
* *
6946413 AATCATTTATAAATTAGTAATA
1 AATCAATTATTAATTAGTAATA
*
6946435 AATCAA-TGTTAATTTAGTAATA
1 AATCAATTATTAA-TTAGTAATA
6946457 GATTATTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
21 4 0.11
22 34 0.89
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.41
Consensus pattern (22 bp):
AATCAATTATTAATTAGTAATA
Found at i:6946923 original size:21 final size:21
Alignment explanation
Indices: 6946833--6946956 Score: 86
Period size: 21 Copynumber: 5.8 Consensus size: 21
6946823 TATCATAAAT
**
6946833 TATCAAAGAGTTACTTAAATTA
1 TATCAAA-AGTTACCAAAATTA
* * * *
6946855 CATCAAGAGATTACTAAAATTT
1 TATCAAAAG-TTACCAAAATTA
* * *
6946877 TGTCAAAAATTACCAAAATTG
1 TATCAAAAGTTACCAAAATTA
* *
6946898 CATCAATAGTTACCAAAATTA
1 TATCAAAAGTTACCAAAATTA
* ** *
6946919 TATCATAAGTTATTAAAATTT
1 TATCAAAAGTTACCAAAATTA
*
6946940 TATCAAAAGTTATCAAA
1 TATCAAAAGTTACCAAA
6946957 TTTTACTTAT
Statistics
Matches: 78, Mismatches: 23, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
21 58 0.74
22 20 0.26
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.34
Consensus pattern (21 bp):
TATCAAAAGTTACCAAAATTA
Found at i:6952905 original size:15 final size:15
Alignment explanation
Indices: 6952885--6952926 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
6952875 AGAAGAGAAG
6952885 TTTTGTTTTCTTTAC
1 TTTTGTTTTCTTTAC
6952900 TTTTG-TTTCTTTTAC
1 TTTTGTTTTC-TTTAC
*
6952915 -TTTCTTTTCTTT
1 TTTTGTTTTCTTT
6952927 TTTTTTCCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.05, C:0.14, G:0.05, T:0.76
Consensus pattern (15 bp):
TTTTGTTTTCTTTAC
Found at i:6952933 original size:15 final size:15
Alignment explanation
Indices: 6952890--6952927 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
6952880 AGAAGTTTTG
6952890 TTTTC-TTTACTTT-
1 TTTTCTTTTACTTTC
6952903 TGTTTCTTTTACTTTC
1 T-TTTCTTTTACTTTC
6952919 TTTTCTTTT
1 TTTTCTTTT
6952928 TTTTTCCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 1 0.05
14 4 0.18
15 16 0.73
16 1 0.05
ACGTcount: A:0.05, C:0.16, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTCTTTTACTTTC
Found at i:6954770 original size:14 final size:13
Alignment explanation
Indices: 6954733--6954799 Score: 75
Period size: 14 Copynumber: 5.1 Consensus size: 13
6954723 TTTCTTTAAA
6954733 TTTTTATTATTACT
1 TTTTTATTATTA-T
6954747 TTTATTATTATTAT
1 TTT-TTATTATTAT
6954761 TTTTTA--ATTAT
1 TTTTTATTATTAT
*
6954772 TTTTTCTTATTACT
1 TTTTTATTATTA-T
*
6954786 TTTTAATTATTAT
1 TTTTTATTATTAT
6954799 T
1 T
6954800 AGGTTTATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
11 10 0.22
13 9 0.20
14 18 0.39
15 9 0.20
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTATTATTAT
Found at i:6956520 original size:50 final size:50
Alignment explanation
Indices: 6956417--6956607 Score: 194
Period size: 50 Copynumber: 3.9 Consensus size: 50
6956407 AAATTCTAAA
* * * * * * *
6956417 AAAATGCTCC-TCTTAGTAGAGGCTTAACAATTTTTAAAATTCTTATATGG
1 AAAATACTCCTTCTAAGTAGAGGCTCAACAACTTTAAAAATT-TCATATTG
* *
6956467 AAAATACTCCTTTTAA-TAGAGGCTCAACAATTTTAAAAATTATCATATTG
1 AAAATACTCCTTCTAAGTAGAGGCTCAACAACTTTAAAAATT-TCATATTG
* *
6956517 AAAA-AGCT-CATCTAAGTAGAGGCTCAACAACTTTAAAAATTTCATCTTG
1 AAAATA-CTCCTTCTAAGTAGAGGCTCAACAACTTTAAAAATTTCATATTG
** *
6956566 AAAAGGCTCC-TCTAAGCAGAGGCTCAACAACTTTAAAAATTT
1 AAAATACTCCTTCTAAGTAGAGGCTCAACAACTTTAAAAATTT
6956608 TTATCTTGAA
Statistics
Matches: 122, Mismatches: 14, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
49 50 0.41
50 69 0.57
51 3 0.02
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (50 bp):
AAAATACTCCTTCTAAGTAGAGGCTCAACAACTTTAAAAATTTCATATTG
Found at i:6956587 original size:49 final size:49
Alignment explanation
Indices: 6956484--6956620 Score: 202
Period size: 49 Copynumber: 2.8 Consensus size: 49
6956474 TCCTTTTAAT
* * *
6956484 AGAGGCTCAACAATTTTAAAAATTATCATATTGAAAAAGCTCATCTAAGT
1 AGAGGCTCAACAACTTTAAAAATT-TCATCTTGAAAAAGCTCATCTAAGC
* *
6956534 AGAGGCTCAACAACTTTAAAAATTTCATCTTGAAAAGGCTCCTCTAAGC
1 AGAGGCTCAACAACTTTAAAAATTTCATCTTGAAAAAGCTCATCTAAGC
*
6956583 AGAGGCTCAACAACTTTAAAAATTTTTATCTTGAAAAA
1 AGAGGCTCAACAACTTTAAAAA-TTTCATCTTGAAAAA
6956621 CAAGGCTACT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
49 43 0.54
50 36 0.46
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (49 bp):
AGAGGCTCAACAACTTTAAAAATTTCATCTTGAAAAAGCTCATCTAAGC
Found at i:6956650 original size:54 final size:49
Alignment explanation
Indices: 6956483--6956722 Score: 195
Period size: 49 Copynumber: 4.8 Consensus size: 49
6956473 CTCCTTTTAA
* * *
6956483 TAGAGGCTCAACAATTTTAAAAATTATCATATTGAAAAAGCT-CATCTAAG
1 TAGAGGCTCAACAACTTTAAAAATT-TCATCTTGAAAAGGCTAC-TCTAAG
*
6956533 TAGAGGCTCAACAACTTTAAAAATTTCATCTTGAAAAGGCTCCTCTAAG
1 TAGAGGCTCAACAACTTTAAAAATTTCATCTTGAAAAGGCTACTCTAAG
* * *
6956582 CAGAGGCTCAACAACTTTAAAAATTTTTATCTTGAAAAACAAGGCTACTTTAAG
1 TAGAGGCTCAACAACTTTAAAAA-TTTCATCTTG---AA-AAGGCTACTCTAAG
* * * *
6956636 TAAATGCTCAACAACGTTTAAAAA----ATCTTTAAAAAGCT-CTTCTAAG
1 TAGAGGCTCAACAAC-TTTAAAAATTTCATCTTGAAAAGGCTAC-TCTAAG
* * *
6956682 TAGAGGTTCAACAGCTTAAAAAAAAATTTTCATCTTGAAAA
1 TAGAGGCTCAACAACTT---TAAAAA-TTTCATCTTGAAAA
6956723 AAGCTCTTCT
Statistics
Matches: 155, Mismatches: 19, Indels: 29
0.76 0.09 0.14
Matches are distributed among these distances:
45 3 0.02
46 21 0.14
47 2 0.01
48 5 0.03
49 42 0.27
50 39 0.25
53 11 0.07
54 24 0.15
55 8 0.05
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (49 bp):
TAGAGGCTCAACAACTTTAAAAATTTCATCTTGAAAAGGCTACTCTAAG
Found at i:6956694 original size:100 final size:101
Alignment explanation
Indices: 6956529--6956752 Score: 235
Period size: 100 Copynumber: 2.2 Consensus size: 101
6956519 AAAGCTCATC
* *
6956529 TAAGTAGAGGCTCAACAACTTTAAAAATTTCATCTTGAAAAGGCTCCTCTAAGCAGAGGCTCAAC
1 TAAGTAAAGGCTCAACAACTTTAAAAA--T-ATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAAC
* *
6956594 AACTT-TAAAAATTTTTATCTTGAAAAACAAGGCTACTT
63 AACTTAAAAAAATTTTCATCTTGAAAAACAAGGCTACTT
* * * * * *
6956632 TAAGTAAATGCTCAACAACGTTTAAAAA-ATCTTTAAAAAGCTCTTCTAAGTAGAGGTTCAACAG
1 TAAGTAAAGGCTCAACAAC-TTTAAAAATATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAA
6956696 CTTAAAAAAAAATTTTCATCTTG-AAAA-AA-GCT-CTT
65 CTT--AAAAAAATTTTCATCTTGAAAAACAAGGCTACTT
* *
6956731 CTAAGTAAAGGCTTAATAACTT
1 -TAAGTAAAGGCTCAACAACTT
6956753 AAATTTTTTT
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
99 5 0.05
100 52 0.50
101 2 0.02
102 4 0.04
103 32 0.31
104 8 0.08
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (101 bp):
TAAGTAAAGGCTCAACAACTTTAAAAATATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAAC
TTAAAAAAATTTTCATCTTGAAAAACAAGGCTACTT
Found at i:6957583 original size:10 final size:10
Alignment explanation
Indices: 6957554--6957600 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
6957544 AGATAGGTCA
*
6957554 TTTTTTTCTC
1 TTTTTTTCTT
*
6957564 ATTTTTTCTT
1 TTTTTTTCTT
6957574 TTTTTTTCTT
1 TTTTTTTCTT
*
6957584 TTTTTTT-TA
1 TTTTTTTCTT
6957593 TTTTTTTC
1 TTTTTTTC
6957601 AAGCAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 8 0.25
10 24 0.75
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:6975185 original size:70 final size:70
Alignment explanation
Indices: 6975071--6975211 Score: 264
Period size: 70 Copynumber: 2.0 Consensus size: 70
6975061 TGGCAATTGC
* *
6975071 ATCCCACAAGTCTAAAATATATTGTCTTAGCAGTTGGATGTGGTTGGTTTGAAACCTAGAAGCTT
1 ATCCCACAAGTCTAAAATATATTGTCCTAGCAGTTGGATATGGTTGGTTTGAAACCTAGAAGCTT
6975136 CAATT
66 CAATT
6975141 ATCCCACAAGTCTAAAATATATTGTCCTAGCAGTTGGATATGGTTGGTTTGAAACCTAGAAGCTT
1 ATCCCACAAGTCTAAAATATATTGTCCTAGCAGTTGGATATGGTTGGTTTGAAACCTAGAAGCTT
6975206 CAATT
66 CAATT
6975211 A
1 A
6975212 ATCACATTAC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (70 bp):
ATCCCACAAGTCTAAAATATATTGTCCTAGCAGTTGGATATGGTTGGTTTGAAACCTAGAAGCTT
CAATT
Found at i:6979980 original size:22 final size:22
Alignment explanation
Indices: 6979948--6979990 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
6979938 TATTTTTATC
*
6979948 ATTAATCAAAATTAAATTAATA
1 ATTAATCAAAATTAAAATAATA
*
6979970 ATTAATTAAAATTAAAATAAT
1 ATTAATCAAAATTAAAATAAT
6979991 GTTTTTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
ATTAATCAAAATTAAAATAATA
Found at i:6980978 original size:20 final size:21
Alignment explanation
Indices: 6980953--6980994 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
6980943 TTTAAAATTA
*
6980953 TAATAAAAATT-ATATATATT
1 TAATAAAAATTAAAATATATT
6980973 TAATAAAAATTAAAATATATT
1 TAATAAAAATTAAAATATATT
6980994 T
1 T
6980995 TTTATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATAAAAATTAAAATATATT
Found at i:6981078 original size:20 final size:20
Alignment explanation
Indices: 6981032--6981093 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
6981022 AATATATAAT
*
6981032 TTTTATATAAAATAT-AATA
1 TTTTATATAAATTATCAATA
**
6981051 TAAATATATAAATTATCAATA
1 T-TTTATATAAATTATCAATA
6981072 TTTTATATAAATTATCATATA
1 TTTTATATAAATTATCA-ATA
6981093 T
1 T
6981094 GAATTATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.03
20 25 0.71
21 9 0.26
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTTATATAAATTATCAATA
Found at i:6981093 original size:34 final size:33
Alignment explanation
Indices: 6981043--6981134 Score: 123
Period size: 34 Copynumber: 2.8 Consensus size: 33
6981033 TTTATATAAA
*
6981043 ATATAATATAAATATATAAATTATCAATATTTT
1 ATATAATATTAATATATAAATTATCAATATTTT
* * *
6981076 ATATAA-ATTATCATATATGAATTATTATTATTTT
1 ATATAATATTA--ATATATAAATTATCAATATTTT
6981110 ATATAATATTAATATATAAATTATC
1 ATATAATATTAATATATAAATTATC
6981135 GAAATCTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
32 3 0.06
33 18 0.36
34 25 0.50
35 4 0.08
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (33 bp):
ATATAATATTAATATATAAATTATCAATATTTT
Found at i:6995889 original size:32 final size:32
Alignment explanation
Indices: 6995848--6995910 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
6995838 AATCTCGCTA
* *
6995848 AATCAAGGTTCATAAAATTGATGTTATCGTCT
1 AATCAAGGTTCACAAAATTGATGGTATCGTCT
6995880 AATCAAGGTTCACAAAATTGATGGTATCGTC
1 AATCAAGGTTCACAAAATTGATGGTATCGTC
6995911 CTGTGATTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.33
Consensus pattern (32 bp):
AATCAAGGTTCACAAAATTGATGGTATCGTCT
Found at i:6998746 original size:23 final size:26
Alignment explanation
Indices: 6998711--6998759 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
6998701 ATTATTTTTG
6998711 TTTACTTGAAAAT-ATATTTTTTATT
1 TTTACTTGAAAATGATATTTTTTATT
*
6998736 TTTA-TTG-AAATGATTTTTTTTATT
1 TTTACTTGAAAATGATATTTTTTATT
6998760 ATTTTGTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 4 0.18
24 14 0.64
25 4 0.18
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (26 bp):
TTTACTTGAAAATGATATTTTTTATT
Found at i:6999263 original size:12 final size:13
Alignment explanation
Indices: 6999242--6999274 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
6999232 ATCGGTCGTA
6999242 AAAAACTTC-ATCG
1 AAAAA-TTCAATCG
6999255 AAAAATTCAATCG
1 AAAAATTCAATCG
6999268 AAAAATT
1 AAAAATT
6999275 TAAAGTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 3 0.16
13 16 0.84
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.24
Consensus pattern (13 bp):
AAAAATTCAATCG
Found at i:6999793 original size:10 final size:11
Alignment explanation
Indices: 6999774--6999804 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
6999764 TAAAAATAAA
6999774 AATAATAATAT
1 AATAATAATAT
6999785 AAT-ATAATAT
1 AATAATAATAT
6999795 AATAATAATA
1 AATAATAATA
6999805 ACATAATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATAATAT
Found at i:6999796 original size:24 final size:24
Alignment explanation
Indices: 6999769--6999817 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
6999759 AAAAATAAAA
*
6999769 ATAAAAATAATAATATAATATAAT
1 ATAAAAATAATAACATAATATAAT
* *
6999793 ATAATAATAATAACATAATGTAAT
1 ATAAAAATAATAACATAATATAAT
6999817 A
1 A
6999818 ATAACAACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (24 bp):
ATAAAAATAATAACATAATATAAT
Found at i:7000523 original size:119 final size:118
Alignment explanation
Indices: 7000178--7000894 Score: 563
Period size: 119 Copynumber: 6.1 Consensus size: 118
7000168 TAAAATAACT
* * * * * * * *
7000178 TGGATTAAACCAAGATCAGGTGATCAAGACT-AAATCATGAGTCAAGATGAAGTGATCAGGATC-
1 TGGACTAAGCCAAGATCAAGTGATCGAGA-TGAAACCATGAGTCAAAATAAAGCGATCAGGATCT
* *
7000241 AGGTCAAGATAAAAAATAAGTGATCGAGATGAAACCACGAATCATAAAAAATGATC
65 A-GTCAAGGTAAAAAATAAATGATCG-GATGAAACCACGAATCATAAAAAATGATC
* * * * * *
7000297 TAGACTAAGCCAAGATCAAGTGA-CTAGGATG-AACCATGAGTTAAAA-ATAAGTGACCAGTATC
1 TGGACTAAGCCAAGATCAAGTGATCGA-GATGAAACCATGAGTCAAAATA-AAGCGATCAGGATC
* * * * *
7000359 GAGTCGAA-GTCAAAAATAAATGATC-GAGGCAGAACCATGAATCATAAGAAATGATC
64 TAGTC-AAGGTAAAAAATAAATGATCGGATG-A-AACCACGAATCATAAAAAATGATC
* * * * * *
7000415 TGGACTGAGCCAAGATCAAATGATCGAGATAAAATCATGAGTCAAAATAAAGCAATCAGGACCTA
1 TGGACTAAGCCAAGATCAAGTGATCGAGATGAAACCATGAGTCAAAATAAAGCGATCAGGATCTA
* * *
7000480 GTCGAGGTAAAAAATAAATGATCAGGATGAAACCACGAATCATAAAAAATAATA
66 GTCAAGGTAAAAAATAAATGATC-GGATGAAACCACGAATCATAAAAAATGATC
* * * * * * *
7000534 TGGACTAAGCCAAGATCAAGTGATC-AGGACGAAACCACGAGTCAAAAAAAAAAGTGACCA-AAA
1 TGGACTAAGCCAAGATCAAGTGATCGA-GATGAAACCATGAGTC--AAAATAAAGCGATCAGGAT
* * *
7000597 CTGAGTCAAGATAAAAAATAAATGATTGGGAT-AAAGCCACGAATCATAAGAAATGATC
63 CT-AGTCAAGGTAAAAAATAAATGA-TCGGATGAAA-CCACGAATCATAAAAAATGATC
* * * *
7000655 TAGACTAAGCCAAGATCAAGTGATCGGGATGAAACCATGAGTCAAAATAAAATC-ATCAGGATCG
1 TGGACTAAGCCAAGATCAAGTGATCGAGATGAAACCATGAGTCAAAAT-AAAGCGATCAGGATCT
** * * * *
7000719 AGTTGAGGTCAAAAATAAATAATCGAGATAAAACCATGAATCAT-----A--ATC
65 AGTCAAGGTAAAAAATAAATGATCG-GATGAAACCACGAATCATAAAAAATGATC
* * * * * * * *
7000767 TGGACTGAGCCAATATCAAGAGATTGGGATGAAACCACGAGTCAAAATAAAGCAATTAGGA-CTG
1 TGGACTAAGCCAAGATCAAGTGATCGAGATGAAACCATGAGTCAAAATAAAGCGATCAGGATCT-
** * *
7000831 AGTCAAGGTTGAAAATAAATGATCGGGATGAAATCACGAATCATAAAAAATAATC
65 AGTCAAGGTAAAAAATAAATGATC-GGATGAAACCACGAATCATAAAAAATGATC
*
7000886 TTGACTAAG
1 TGGACTAAG
7000895 TTAAGATTAG
Statistics
Matches: 472, Mismatches: 92, Indels: 68
0.75 0.15 0.11
Matches are distributed among these distances:
111 5 0.01
112 85 0.18
113 1 0.00
114 1 0.00
116 3 0.01
117 2 0.00
118 93 0.20
119 170 0.36
120 16 0.03
121 95 0.20
122 1 0.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (118 bp):
TGGACTAAGCCAAGATCAAGTGATCGAGATGAAACCATGAGTCAAAATAAAGCGATCAGGATCTA
GTCAAGGTAAAAAATAAATGATCGGATGAAACCACGAATCATAAAAAATGATC
Found at i:7000699 original size:240 final size:237
Alignment explanation
Indices: 7000250--7000764 Score: 639
Period size: 240 Copynumber: 2.2 Consensus size: 237
7000240 CAGGTCAAGA
* * *
7000250 TAAAAAATAAGTGATCGAGATGAAACCACGAATCATAAAAAATGATCTAGACTAAGCCAAGATCA
1 TAAAAAATAAATGATCGAGATGAAACCACGAATCATAAAAAATAATATAGACTAAGCCAAGATCA
* * * * ** *
7000315 AGTGACTAGGATGAACCATGAGTTAAAAATAAGTGACCAGTATCGAGTCGAAGTCAAAAATAAAT
66 AGTGACTAGGACGAACCACGAGTAAAAAAAAAGTGACCAAAATCGAGTCGAAGTAAAAAATAAAT
* * * *
7000380 GATCGAGGCAGAACCATGAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAATGATCGAGAT
131 GATCGAGGCAAAACCACGAATCATAAGAAATGATCTAGACTAAGCCAAGATCAAATGATCGAGAT
* *
7000445 AAAATCATGAGTCAAAAT-AAAGCAATCAGGACCTAGTCGAGG
196 AAAACCATGAGTCAAAATAAAAGC-ATCAGGACCGAGTCGAGG
*
7000487 TAAAAAATAAATGATC-AGGATGAAACCACGAATCATAAAAAATAATATGGACTAAGCCAAGATC
1 TAAAAAATAAATGATCGA-GATGAAACCACGAATCATAAAAAATAATATAGACTAAGCCAAGATC
7000551 AAGTGA-TCAGGACGAAACCACGAGTCAAAAAAAAAAGTGACCAAAA-CTGAGTC-AAGATAAAA
65 AAGTGACT-AGGACG-AACCACGAGT--AAAAAAAAAGTGACCAAAATC-GAGTCGAAG-TAAAA
* *
7000613 AATAAATGATTG-GG-ATAAAGCCACGAATCATAAGAAATGATCTAGACTAAGCCAAGATCAAGT
124 AATAAATGATCGAGGCA-AAA-CCACGAATCATAAGAAATGATCTAGACTAAGCCAAGATCAAAT
* * * * *
7000676 GATCGGGATGAAACCATGAGTCAAAATAAAATCATCAGGATCGAGTTGAGG
187 GATCGAGATAAAACCATGAGTCAAAATAAAAGCATCAGGACCGAGTCGAGG
* * * *
7000727 TCAAAAATAAATAATCGAGATAAAACCATGAATCATAA
1 TAAAAAATAAATGATCGAGATGAAACCACGAATCATAA
7000765 TCTGGACTGA
Statistics
Matches: 239, Mismatches: 28, Indels: 19
0.84 0.10 0.07
Matches are distributed among these distances:
236 2 0.01
237 69 0.29
238 10 0.04
239 8 0.03
240 145 0.61
241 5 0.02
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (237 bp):
TAAAAAATAAATGATCGAGATGAAACCACGAATCATAAAAAATAATATAGACTAAGCCAAGATCA
AGTGACTAGGACGAACCACGAGTAAAAAAAAAGTGACCAAAATCGAGTCGAAGTAAAAAATAAAT
GATCGAGGCAAAACCACGAATCATAAGAAATGATCTAGACTAAGCCAAGATCAAATGATCGAGAT
AAAACCATGAGTCAAAATAAAAGCATCAGGACCGAGTCGAGG
Found at i:7000884 original size:352 final size:353
Alignment explanation
Indices: 7000243--7000894 Score: 886
Period size: 352 Copynumber: 1.8 Consensus size: 353
7000233 TCAGGATCAG
*
7000243 GTCAAGATAAAAAATAAGTGATCGAGATGAAACCACGAATCATAAAAAATGATCTAGACTAAGCC
1 GTCAAGATAAAAAATAAATGATCGAGATGAAACCACGAATCATAAAAAATGATCTAGACTAAGCC
* * * *
7000308 AAGATCAAGTGACTAGGATGAACCATGAGTTAAAAATAAGTGACCAGTATCGAGTCGAAGTCAAA
66 AAGATCAAGTGACTAGGATGAACCATGAGTCAAAAATAAATCACCAGGATCGAGTCGAAGTCAAA
* * *
7000373 AATAAATGATCGAGGCAGAACCATGAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAATGA
131 AATAAATAATCGAGACAAAACCATGAATCAT----AA-GATCTGGACTGAGCCAAGATCAAATGA
* * *
7000438 TCGAGATAAAATCATGAGTCAAAATAAAGCAATCAGGACCTAGTCGAGGTAAAAAATAAATGATC
191 TCGAGATAAAACCACGAGTCAAAATAAAGCAATCAGGACCTAGTCAAGGTAAAAAATAAATGATC
7000503 AGGATGAAACCACGAATCATAAAAAATAATATGGACTAAGCCAAGATCAAGTGATCAGGACGAAA
256 AGGATGAAACCACGAATCATAAAAAATAATATGGACTAAGCCAAGATCAAGTGATCAGGACGAAA
7000568 CCACGAGTCAAAAAAAAAAGTGACCAAAACTGA
321 CCACGAGTCAAAAAAAAAAGTGACCAAAACTGA
* * *
7000601 GTCAAGATAAAAAATAAATGATTGGGAT-AAAGCCACGAATCATAAGAAATGATCTAGACTAAGC
1 GTCAAGATAAAAAATAAATGATCGAGATGAAA-CCACGAATCATAAAAAATGATCTAGACTAAGC
* * * *
7000665 CAAGATCAAGTGA-TCGGGATGAAACCATGAGTC-AAAATAAAATCATCAGGATCGAGTTGAGGT
65 CAAGATCAAGTGACT-AGGATG-AACCATGAGTCAAAAAT-AAATCACCAGGATCGAGTCGAAGT
* *
7000728 CAAAAATAAATAATCGAGATAAAACCATGAATCAT-A-ATCTGGACTGAGCCAATATCAAGA-GA
127 CAAAAATAAATAATCGAGACAAAACCATGAATCATAAGATCTGGACTGAGCCAAGATCAA-ATGA
* * * * **
7000790 TTGGGATGAAACCACGAGTCAAAATAAAGCAATTAGGA-CTGAGTCAAGGTTGAAAATAAATGAT
191 TCGAGATAAAACCACGAGTCAAAATAAAGCAATCAGGACCT-AGTCAAGGTAAAAAATAAATGAT
* * * *
7000854 CGGGATGAAATCACGAATCATAAAAAATAATCTTGACTAAG
255 CAGGATGAAACCACGAATCATAAAAAATAATATGGACTAAG
7000895 TTAAGATTAG
Statistics
Matches: 258, Mismatches: 30, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
351 2 0.01
352 112 0.43
353 1 0.00
354 1 0.00
357 4 0.02
358 79 0.31
359 59 0.23
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.19
Consensus pattern (353 bp):
GTCAAGATAAAAAATAAATGATCGAGATGAAACCACGAATCATAAAAAATGATCTAGACTAAGCC
AAGATCAAGTGACTAGGATGAACCATGAGTCAAAAATAAATCACCAGGATCGAGTCGAAGTCAAA
AATAAATAATCGAGACAAAACCATGAATCATAAGATCTGGACTGAGCCAAGATCAAATGATCGAG
ATAAAACCACGAGTCAAAATAAAGCAATCAGGACCTAGTCAAGGTAAAAAATAAATGATCAGGAT
GAAACCACGAATCATAAAAAATAATATGGACTAAGCCAAGATCAAGTGATCAGGACGAAACCACG
AGTCAAAAAAAAAAGTGACCAAAACTGA
Found at i:7026294 original size:74 final size:74
Alignment explanation
Indices: 7026216--7026390 Score: 201
Period size: 73 Copynumber: 2.4 Consensus size: 74
7026206 AATAACATCG
* * * * * *
7026216 TTTTTTTAACAAAAATTGTGTTTTTTATTTTAGAAACGCTATTTTTATTGAATTCTGAAAAATA-
1 TTTTTTTAACAAAAACTATGTTTTTTATTTTAGAAACACTATCTTTATTGAATTATAAAAAATAT
7026280 TTTTT-TCA
66 TTTTTATCA
* * * * * * *
7026288 TATTTTTGATAAAATACTATATTTTTTATTTTAGAAATATTATCTTTGTTGAATTATAAAAAATA
1 TTTTTTTAACAAAA-ACTATGTTTTTTATTTTAGAAACACTATCTTTATTGAATTATAAAAAATA
*
7026353 TTTTTTTTCA
65 TTTTTTATCA
7026363 TTTTTTTAACAAAAACTATGTTTTTTAT
1 TTTTTTTAACAAAAACTATGTTTTTTAT
7026391 ATCTTAAAAA
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
72 11 0.13
73 40 0.48
74 18 0.22
75 14 0.17
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (74 bp):
TTTTTTTAACAAAAACTATGTTTTTTATTTTAGAAACACTATCTTTATTGAATTATAAAAAATAT
TTTTTATCA
Found at i:7026955 original size:18 final size:18
Alignment explanation
Indices: 7026913--7026957 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
7026903 GGTAGTAGAG
7026913 TATTTTTTATCATTATTT
1 TATTTTTTATCATTATTT
*
7026931 TGGTTTTTTAT-ATTATATT
1 T-ATTTTTTATCATTAT-TT
7026950 TATTTTTT
1 TATTTTTT
7026958 TAATAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (18 bp):
TATTTTTTATCATTATTT
Found at i:7026956 original size:19 final size:19
Alignment explanation
Indices: 7026915--7026959 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7026905 TAGTAGAGTA
*
7026915 TTTTTTATCATTATTTTGG
1 TTTTTTATCATTATTTTAG
*
7026934 TTTTTTAT-ATTATATTTAT
1 TTTTTTATCATTAT-TTTAG
7026953 TTTTTTA
1 TTTTTTA
7026960 ATAAAATGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (19 bp):
TTTTTTATCATTATTTTAG
Found at i:7027595 original size:27 final size:26
Alignment explanation
Indices: 7027564--7027651 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 26
7027554 TTTGTGCAGG
7027564 AAAAATTGGTACTTTCAACTTTTTCTC
1 AAAAATT-GTACTTTCAACTTTTTCTC
*
7027591 AAAAATT-T--TTTGAAACTTTAATT-TC
1 AAAAATTGTACTTT-CAACTTT--TTCTC
7027616 GAGAAAAATTGATACTTTCAACTTTTTCTC
1 ---AAAAATTG-TACTTTCAACTTTTTCTC
7027646 AAAAAT
1 AAAAAT
7027652 CTATTTTTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 22
0.67 0.03 0.31
Matches are distributed among these distances:
23 3 0.06
24 6 0.12
25 3 0.06
26 2 0.04
27 13 0.27
28 7 0.15
29 2 0.04
30 3 0.06
31 6 0.12
32 3 0.06
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.42
Consensus pattern (26 bp):
AAAAATTGTACTTTCAACTTTTTCTC
Found at i:7027687 original size:58 final size:54
Alignment explanation
Indices: 7027563--7027774 Score: 244
Period size: 58 Copynumber: 3.7 Consensus size: 54
7027553 TTTTGTGCAG
* * *
7027563 GAAAAATTGGTACTTTCAACTTTTTCTCAAAAATTTTTTGAAACTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATTTTTTGAAAC-TTATTTTTGA
*
7027618 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATCTATTTTTGAAAACTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAA--T-TTTTTG-AAACTTATTTTTGA
* * *
7027676 GAAAAATTGATACTTTCAACTTTTTTTCAAAAATATTTTATGAAATTTTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAAT-TTTT-TGAAACTTATT--TTT-GA
* *
7027735 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTT
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAAT-TTTTT
7027775 TGAATTTTAT
Statistics
Matches: 138, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
55 32 0.23
56 13 0.09
57 3 0.02
58 49 0.36
59 41 0.30
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (54 bp):
GAAAAATTGATACTTTCAACTTTTTCTCAAAAATTTTTTGAAACTTATTTTTGA
Found at i:7027750 original size:59 final size:58
Alignment explanation
Indices: 7027563--7027788 Score: 275
Period size: 59 Copynumber: 3.9 Consensus size: 58
7027553 TTTTGTGCAG
* *
7027563 GAAAAATTGGTACTTTCAACTTTTTCTCAAAAAT-TTTTTGAAA--CTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTGAAATTTTTTAATTTCGA
* * *
7027618 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATCTATTTTTGAAAACTTATT--TTT-AA
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAA--TATTTTTG-AAATTTTTTAATTTCGA
*
7027676 GAAAAATTGATACTTTCAACTTTTTTTCAAAAATATTTTATGAAATTTTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTT-TGAAATTTTTTAATTTCGA
* * *
7027735 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAATTTTATTTAA
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTGAAATTT-TTTAA
7027789 AGAAAAAAAT
Statistics
Matches: 147, Mismatches: 12, Indels: 19
0.83 0.07 0.11
Matches are distributed among these distances:
55 32 0.22
56 13 0.09
57 3 0.02
58 42 0.29
59 46 0.31
60 9 0.06
61 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.46
Consensus pattern (58 bp):
GAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTGAAATTTTTTAATTTCGA
Found at i:7027804 original size:11 final size:10
Alignment explanation
Indices: 7027802--7027851 Score: 55
Period size: 11 Copynumber: 4.7 Consensus size: 10
7027792 AAAAAATAAG
*
7027802 AAAATAAAAT
1 AAAATAAAAA
7027812 AAAATAAAAATA
1 AAAAT-AAAA-A
*
7027824 AAAATAAAGA
1 AAAATAAAAA
7027834 AAAATAAAATA
1 AAAATAAAA-A
7027845 AAAATAA
1 AAAATAA
7027852 TATGAAGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 14 0.41
11 15 0.44
12 5 0.15
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:7027812 original size:5 final size:5
Alignment explanation
Indices: 7027802--7027870 Score: 59
Period size: 5 Copynumber: 12.8 Consensus size: 5
7027792 AAAAAATAAG
7027802 AAAAT AAAAT AAAAT AAAAAT AAAAAT AAAGA- AAAAT AAAAT AAAAAT
1 AAAAT AAAAT AAAAT -AAAAT -AAAAT AAA-AT AAAAT AAAAT -AAAAT
* *
7027850 AATAT GAAGAT AAAAAT AAAA
1 AAAAT -AAAAT -AAAAT AAAA
7027871 GAATATTAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
4 1 0.02
5 29 0.53
6 25 0.45
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:7027823 original size:6 final size:6
Alignment explanation
Indices: 7027793--7027870 Score: 60
Period size: 6 Copynumber: 13.7 Consensus size: 6
7027783 ATTTAAAGAA
*
7027793 AAAAAT AAGAAA- ATAAAAT -AAAAT AAAAAT AAAAAT --AAAG AAAAAT
1 AAAAAT AA-AAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* * *
7027839 -AAAAT AAAAAT -AATAT GAAGAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
7027871 GAATATTAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
4 3 0.05
5 14 0.24
6 37 0.64
7 4 0.07
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:7027864 original size:27 final size:27
Alignment explanation
Indices: 7027791--7027870 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
7027781 TTATTTAAAG
* *
7027791 AAAAA-AATAAGAAAATAAAATAAAAT
1 AAAAATAATATGAAGATAAAATAAAAT
* *
7027817 AAAAATAAAAATAAAGA-AAAATAAAAT
1 AAAAAT-AATATGAAGATAAAATAAAAT
7027844 AAAAATAATATGAAGATAAAAATAAAA
1 AAAAATAATATGAAGAT-AAAATAAAA
7027871 GAATATTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
26 13 0.30
27 16 0.36
28 15 0.34
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (27 bp):
AAAAATAATATGAAGATAAAATAAAAT
Found at i:7027899 original size:3 final size:3
Alignment explanation
Indices: 7027886--7027921 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
7027876 TTAAACAATT
*
7027886 ATA AT- ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7027922 ATAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7028824 original size:30 final size:27
Alignment explanation
Indices: 7028779--7028847 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 27
7028769 ATAACAAAAA
7028779 AATAATTAGATAAATAAAAGAAATAGATAAAT
1 AATAA-TA-ATAAATAAAAG--A-AGATAAAT
7028811 AATAATAATAAATAAAAGAAGATAAAT
1 AATAATAATAAATAAAAGAAGATAAAT
*
7028838 AATAAAAATA
1 AATAATAATA
7028848 TTAATAGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
27 17 0.47
28 1 0.03
30 11 0.31
31 2 0.06
32 5 0.14
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (27 bp):
AATAATAATAAATAAAAGAAGATAAAT
Found at i:7028861 original size:17 final size:17
Alignment explanation
Indices: 7028759--7028866 Score: 69
Period size: 17 Copynumber: 6.2 Consensus size: 17
7028749 AAAGATAAAT
7028759 ATATTAATAGATAACAAA
1 ATATTAATAGATAA-AAA
* *
7028777 AAAATAATTAGATAAATAA
1 ATATTAA-TAGATAAA-AA
** *
7028796 A-AGAAATAGATAAATA
1 ATATTAATAGATAAAAA
* *
7028812 ATAATAATAAATAAAAGA
1 ATATTAATAGATAAAA-A
* *
7028830 AGATAAATA-AT-AAAA
1 ATATTAATAGATAAAAA
7028845 ATATTAATAGATAAAAA
1 ATATTAATAGATAAAAA
7028862 TATAT
1 -ATAT
7028867 ATATATTAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 14
0.71 0.14 0.14
Matches are distributed among these distances:
15 8 0.12
16 7 0.10
17 24 0.35
18 20 0.29
19 10 0.14
ACGTcount: A:0.67, C:0.01, G:0.06, T:0.26
Consensus pattern (17 bp):
ATATTAATAGATAAAAA
Found at i:7029100 original size:5 final size:5
Alignment explanation
Indices: 7029086--7029123 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
7029076 CAACTTGACA
*
7029086 TTTT- TTTTG TTTTG TTTTG TTTTG TTTT- TTTTT TTTTG
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG
7029124 GTTAAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (5 bp):
TTTTG
Found at i:7029180 original size:92 final size:93
Alignment explanation
Indices: 7029061--7029245 Score: 309
Period size: 92 Copynumber: 2.0 Consensus size: 93
7029051 AAGACGTAGA
*
7029061 CACCCATTCAAGACTCAACTTGACATTTTTTTTGTTTTGTTTTGTTTTG-TTTTTTTTTTTTTGG
1 CACCCATTCAAGACTCAACTTGACATTTTTTTTATTTTGTTTTGTTTTGTTTTTTTTTTTTTTGG
**
7029125 TTAAAATTTTGATCAAAGCTCCTCTAAG
66 TTAAAATTTAAATCAAAGCTCCTCTAAG
*
7029153 CACCCATTCAAGACTTAACTTGACATTTTTTTTATTTTGTTTTGTTTTGTTTTTTTTTTTTTTTG
1 CACCCATTCAAGACTCAACTTGACATTTTTTTTATTTTGTTTTGTTTTG-TTTTTTTTTTTTTTG
*
7029218 GTTAAAATTTAAATCAAAGCTCTTCTAA
65 GTTAAAATTTAAATCAAAGCTCCTCTAA
7029246 TCAGAGGCTT
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
92 47 0.55
94 39 0.45
ACGTcount: A:0.22, C:0.14, G:0.10, T:0.54
Consensus pattern (93 bp):
CACCCATTCAAGACTCAACTTGACATTTTTTTTATTTTGTTTTGTTTTGTTTTTTTTTTTTTTGG
TTAAAATTTAAATCAAAGCTCCTCTAAG
Found at i:7029383 original size:42 final size:42
Alignment explanation
Indices: 7029236--7029507 Score: 316
Period size: 42 Copynumber: 6.4 Consensus size: 42
7029226 TTAAATCAAA
* * * * **
7029236 GCTCTTCTAATCAGAGGCTTAACGACTTTGAGAAACATAAACAAA
1 GCTCCTCTAATCAGAGGCTCAATGACTTTGA-AAAAAT-AA-ATG
* * *
7029281 GCTCCTCTAATCAGAGGCTCAATGGCTTTTAAAAAATAAACAAG
1 GCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAAT-AA-ATG
*
7029325 GCTCGTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAATG
** *
7029367 GCTCCTCTAATCAGAGGCTCAACAACTTTG-AAAAGTAAATG
1 GCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAATG
*
7029408 GCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAATG
**
7029450 GCTCCTCTAATCAGAGGCTCAATGACTTTTG-AAAGGTAAATG
1 GCTCCTCTAATCAGAGGCTCAATGAC-TTTGAAAAAATAAATG
7029492 GCT-CTCCTAATCAGAG
1 GCTCCT-CTAATCAGAG
7029508 CTTAACTTTT
Statistics
Matches: 204, Mismatches: 20, Indels: 9
0.88 0.09 0.04
Matches are distributed among these distances:
41 40 0.20
42 87 0.43
43 6 0.03
44 45 0.22
45 26 0.13
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (42 bp):
GCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAATG
Found at i:7029418 original size:41 final size:41
Alignment explanation
Indices: 7029236--7029658 Score: 322
Period size: 41 Copynumber: 10.1 Consensus size: 41
7029226 TTAAATCAAA
* * **
7029236 GCTCTTCTAATCAGAGGCTTAACGACTTTGAGAAACATAAACAAA
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGA-AAA-AT-AA-ATG
* * * *
7029281 GCTCCTCTAATCAGAGGCTCAATGGCTTTTAAAAAATAAACAAG
1 GCTCCTCTAATCAGAGGCTCAACGAC-TTTGAAAAAT-AA-ATG
* *
7029325 GCTCGTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGACTTTG-AAAAATAAATG
* *
7029367 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAGTAAATG
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATG
*
7029408 GCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGACTTT-GAAAAATAAATG
* **
7029450 GCTCCTCTAATCAGAGGCTCAATGACTTTTGAAAGGTAAATG
1 GCTCCTCTAATCAGAGGCTCAACGAC-TTTGAAAAATAAATG
* * * * *
7029492 GCT-CTCCTAATCAGA-GCTTAAC--TTTTGGAAAGTAAATT
1 GCTCCT-CTAATCAGAGGCTCAACGACTTTGAAAAATAAATG
* * * * * * *
7029530 GCTCTTCTAAAT-AGAGGCACCACAAATTTGAAAAGTAAATT
1 GCTCCTCT-AATCAGAGGCTCAACGACTTTGAAAAATAAATG
* * *
7029571 GCTCCTCTAAAT-AGAGG-TACCACAACTTTGAAAAATAAATT
1 GCTCCTCT-AATCAGAGGCT-CAACGACTTTGAAAAATAAATG
* * * * * *
7029612 GCTCATCTAAACAGAGGCACCATGACTTT-AAAAAGTAAATT
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAA-TAAATG
7029653 GCTCCT
1 GCTCCT
7029659 TGACAATCAT
Statistics
Matches: 323, Mismatches: 41, Indels: 32
0.82 0.10 0.08
Matches are distributed among these distances:
38 20 0.06
39 8 0.02
40 7 0.02
41 125 0.39
42 88 0.27
43 8 0.02
44 38 0.12
45 25 0.08
46 4 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (41 bp):
GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATG
Found at i:7029429 original size:83 final size:82
Alignment explanation
Indices: 7029236--7029658 Score: 349
Period size: 83 Copynumber: 5.1 Consensus size: 82
7029226 TTAAATCAAA
* * * **
7029236 GCTCTTCTAATCAGAGGCTTAACGACTTTGAGAAACATAAACAAAGCTCCTCTAATCAGAGGCTC
1 GCTCCTCTAATCAGAGGCTCAATGACTTTGA-AAA-AT-AA-ATGGCTCCTCTAATCAGAGGCTC
* * * *
7029301 AATGGCTTTTAAAAAATAAACAAG
62 AATGAC-TTTGAAAAGT-AA-ATG
* *
7029325 GCTCGTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAAC
1 GCTCCTCTAATCAGAGGCTCAATGACTTTG-AAAAATAAATGGCTCCTCTAATCAGAGGCTCAAT
*
7029390 AACTTTGAAAAGTAAATG
65 GACTTTGAAAAGTAAATG
7029408 GCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATGGCTCCTCTAATCAGAGGCTCAAT
1 GCTCCTCTAATCAGAGGCTCAATGACTTT-GAAAAATAAATGGCTCCTCTAATCAGAGGCTCAAT
*
7029473 GACTTTTGAAAGGTAAATG
65 GAC-TTTGAAAAGTAAATG
* * * * * * *
7029492 GCT-CTCCTAATCAGA-GCT---TAACTTTTGGAAAGTAAATTGCTCTTCTAAAT-AGAGGCACC
1 GCTCCT-CTAATCAGAGGCTCAATGAC-TTTGAAAAATAAATGGCTCCTCT-AATCAGAGGCTCA
** * *
7029551 ACAAATTTGAAAAGTAAATT
63 ATGACTTTGAAAAGTAAATG
* ** * * * * *
7029571 GCTCCTCTAAAT-AGAGG-TACCACAACTTTGAAAAATAAATTGCTCATCTAAACAGAGGCACCA
1 GCTCCTCT-AATCAGAGGCT-CAATGACTTTGAAAAATAAATGGCTCCTCTAATCAGAGGCTCAA
* *
7029634 TGACTTTAAAAAGTAAATT
64 TGACTTTGAAAAGTAAATG
7029653 GCTCCT
1 GCTCCT
7029659 TGACAATCAT
Statistics
Matches: 284, Mismatches: 36, Indels: 35
0.80 0.10 0.10
Matches are distributed among these distances:
79 22 0.08
80 34 0.12
81 8 0.03
82 51 0.18
83 73 0.26
84 29 0.10
85 8 0.03
86 24 0.08
87 2 0.01
88 2 0.01
89 30 0.11
90 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (82 bp):
GCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAATAAATGGCTCCTCTAATCAGAGGCTCAATG
ACTTTGAAAAGTAAATG
Found at i:7029490 original size:125 final size:131
Alignment explanation
Indices: 7029236--7029507 Score: 353
Period size: 125 Copynumber: 2.1 Consensus size: 131
7029226 TTAAATCAAA
* * *
7029236 GCTCTTCTAATCAGAGGCTTAACGACTTTGAGAAACATAAACAAAGCTCCTCTAATCAGAGGCTC
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAGAAACATAAACAAAGCTCCTCTAATCAGAGGCTC
* * *
7029301 AATGGCTTTTAAAAAATAAACAAGGCTCGTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAAT
66 AATGACTTTGAAAAAATAAACAAGGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAAT
7029366 G
131 G
* **
7029367 GCTCCTCTAATCAGAGGCTCAACAACTTTGA-AAA-GT-AA-ATGGCTCCTCTAATCAGAGGCTC
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAGAAACATAAACAAAGCTCCTCTAATCAGAGGCTC
* * **
7029428 AATGACTTTGGAAAAAT-AA-ATGGCTCCTCTAATCAGAGGCTCAATGACTTTTG-AAAGGTAAA
66 AATGACTTTGAAAAAATAAACAAGGCTCCTCTAATCAGAGGCTCAATGAC-TTTGAAAAAATAAA
7029490 TG
130 TG
7029492 GCT-CTCCTAATCAGAG
1 GCTCCT-CTAATCAGAG
7029508 CTTAACTTTT
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
124 2 0.02
125 49 0.39
126 6 0.05
127 35 0.28
128 2 0.02
129 1 0.01
130 3 0.02
131 28 0.22
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (131 bp):
GCTCCTCTAATCAGAGGCTCAACAACTTTGAGAAACATAAACAAAGCTCCTCTAATCAGAGGCTC
AATGACTTTGAAAAAATAAACAAGGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAAT
G
Found at i:7031374 original size:7 final size:8
Alignment explanation
Indices: 7031345--7031373 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7031335 TAATATCTTT
7031345 TTTTTTCA
1 TTTTTTCA
7031353 TTTTTTCA
1 TTTTTTCA
7031361 TTTTTTCA
1 TTTTTTCA
7031369 TTTTT
1 TTTTT
7031374 CTTCTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTTCA
Found at i:7034019 original size:22 final size:23
Alignment explanation
Indices: 7033989--7034038 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
7033979 GCATCCAAAA
7033989 TTTTACTTAA-CTCATTTTCAATC
1 TTTTACTTAAGCT-ATTTTCAATC
* *
7034012 TTTT-CTTAAGCTTTTTTCAATT
1 TTTTACTTAAGCTATTTTCAATC
7034034 TTTTA
1 TTTTA
7034039 AATTGGTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
22 17 0.74
23 6 0.26
ACGTcount: A:0.22, C:0.16, G:0.02, T:0.60
Consensus pattern (23 bp):
TTTTACTTAAGCTATTTTCAATC
Found at i:7035308 original size:11 final size:11
Alignment explanation
Indices: 7035292--7035316 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7035282 ATTTAAAATT
7035292 AAAGAAAATAA
1 AAAGAAAATAA
7035303 AAAGAAAATAA
1 AAAGAAAATAA
7035314 AAA
1 AAA
7035317 AGAAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAGAAAATAA
Found at i:7035318 original size:12 final size:12
Alignment explanation
Indices: 7035292--7035329 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
7035282 ATTTAAAATT
7035292 AAAGAAAAT-AA
1 AAAGAAAATAAA
7035303 AAAGAAAATAAA
1 AAAGAAAATAAA
7035315 AAAGAAGAA-AAA
1 AAAGAA-AATAAA
7035327 AAA
1 AAA
7035330 ATGACTGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 9 0.36
12 14 0.56
13 2 0.08
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (12 bp):
AAAGAAAATAAA
Found at i:7035435 original size:27 final size:27
Alignment explanation
Indices: 7035405--7035494 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
7035395 AATTTCGAGG
7035405 AAAATTGATACTTTCAACTTTTCCTCA
1 AAAATTGATACTTTCAACTTTTCCTCA
* * * *
7035432 AAAATT--CACTTTTGAAAACTTGTTTCTAA
1 AAAATTGATAC-TTT--CAACTT-TTCCTCA
*
7035461 GGAAAATTGATACTTTCAACTTTTCTTCA
1 --AAAATTGATACTTTCAACTTTTCCTCA
7035490 AAAAT
1 AAAAT
7035495 CCATTTTTGA
Statistics
Matches: 46, Mismatches: 9, Indels: 16
0.65 0.13 0.23
Matches are distributed among these distances:
25 2 0.04
26 3 0.07
27 11 0.24
28 5 0.11
29 9 0.20
30 5 0.11
31 6 0.13
32 3 0.07
33 2 0.04
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.40
Consensus pattern (27 bp):
AAAATTGATACTTTCAACTTTTCCTCA
Found at i:7035621 original size:62 final size:58
Alignment explanation
Indices: 7035350--7035614 Score: 283
Period size: 58 Copynumber: 4.6 Consensus size: 58
7035340 TTATGCAGGA
* * * *
7035350 AAAATTGGTACTTTCAACATTTT-CTCCAAAA---ATTTTTG-AAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATTCATTTTTGAAAAC-TTATTTTCAAGG
* *
7035405 AAAATTGATACTTTCAACTTTTCCTCAAAAATTCACTTTTGAAAACTT-GTTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAACTTATTTTC-AAGG
* * * * *
7035463 AAAATTGATACTTTCAACTTTTCTTCAAAAATCCATTTTTGAAATCTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAACTTATTTTCAAGG
** *
7035521 AAAATTGATACTTTCAACTTTT-CTCCAAAAATATTTTTTTTTTAGAAAGCTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCT-C-AAAA-A-TTCATTTTT-GAAAACTTATTTTCAAGG
7035583 AAAATTGATACTTTCAACTTTTCCTCAAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT
7035615 ATTTTTTAAA
Statistics
Matches: 178, Mismatches: 19, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
54 4 0.02
55 24 0.13
57 5 0.03
58 81 0.46
59 12 0.07
60 2 0.01
61 10 0.06
62 38 0.21
63 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAACTTATTTTCAAGG
Found at i:7035641 original size:116 final size:112
Alignment explanation
Indices: 7035350--7035641 Score: 313
Period size: 120 Copynumber: 2.5 Consensus size: 112
7035340 TTATGCAGGA
* * * * *
7035350 AAAATTGGTACTTTCAACATTTT-CTCCAAAA-ATTTTTGAAACTTTAATTTCGAGGAAAATTGA
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTGAAA-TTTTATTT-AAAGAAAATTGA
7035413 TACTTTCAACTTTTCCTCAAAAATTCACTTTTGAAAACTTGTTTCTAAGG
63 TACTTTCAACTTTTCCTCAAAAATTCACTTTTGAAAACTTGTTTCTAAGG
* * *
7035463 AAAATTGATACTTTCAACTTTTCTTCAAAAATCCATTTTTGAAATCTTATTTTTAAGAAAAATTG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT--ATTTTTGAAATTTTA-TTTAAAG-AAAATTG
*** * *
7035528 ATACTTTCAACTTTT-CTCCAAAAATATTTTTTTTTTAGAAAGCTTATTT-TCAAGG
62 ATACTTTCAACTTTTCCT-C-AAAA-A-TTCACTTTT-GAAAACTTGTTTCT-AAGG
*
7035583 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAAATTTTATTTAAAGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAAATTTTATTTAAAGAAAAT
7035642 AAAAAATAAA
Statistics
Matches: 151, Mismatches: 16, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
112 4 0.03
113 23 0.15
115 7 0.05
116 41 0.27
117 10 0.07
118 14 0.09
119 7 0.05
120 45 0.30
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (112 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAAATTTTATTTAAAGAAAATTGATAC
TTTCAACTTTTCCTCAAAAATTCACTTTTGAAAACTTGTTTCTAAGG
Found at i:7035645 original size:5 final size:5
Alignment explanation
Indices: 7035644--7035727 Score: 71
Period size: 5 Copynumber: 15.8 Consensus size: 5
7035634 AAGAAAATAA
* *
7035644 AAAAT AAAAT AAAAT AAAA- AAAAT GAAAAT AAAAA AAAAGA AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAA-T AAAAT AAAAT
* *
7035695 AAAAAT AAAAAT AATAT GAAGAT AAAAAT AAAA
1 -AAAAT -AAAAT AAAAT -AAAAT -AAAAT AAAA
7035728 GAATATTAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
4 4 0.06
5 35 0.51
6 29 0.43
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:7035652 original size:6 final size:6
Alignment explanation
Indices: 7035637--7035727 Score: 66
Period size: 6 Copynumber: 15.5 Consensus size: 6
7035627 TTATTTAAAG
* * *
7035637 AAAATA AAAA-A TAAAATAA AATAAAA AAAATG AAAAT- AAAA-A AAAAGA
1 AAAATA AAAATA -AAAAT-A AA-AATA AAAATA AAAATA AAAATA AAAATA
* * *
7035685 AAAAT- AAAATA AAAATA AAAAT- AATATG AAGATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
7035728 GAATATTAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
5 18 0.26
6 43 0.62
7 5 0.07
8 3 0.04
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:7035705 original size:17 final size:16
Alignment explanation
Indices: 7035637--7035727 Score: 87
Period size: 17 Copynumber: 5.6 Consensus size: 16
7035627 TTATTTAAAG
7035637 AAAATAAAAAATAAA-A
1 AAAATAAAAAA-AAATA
*
7035653 TAAAAT-AAAAAAAATG
1 -AAAATAAAAAAAAATA
*
7035669 AAAATAAAAAAAAAGA
1 AAAATAAAAAAAAATA
7035685 AAAATAAAATAAAAATA
1 AAAATAAAA-AAAAATA
** *
7035702 AAAATAATATGAAGATA
1 AAAATAA-AAAAAAATA
7035719 AAAATAAAA
1 AAAATAAAA
7035728 GAATATTAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
15 8 0.13
16 23 0.37
17 30 0.48
18 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (16 bp):
AAAATAAAAAAAAATA
Found at i:7035719 original size:23 final size:21
Alignment explanation
Indices: 7035642--7035727 Score: 106
Period size: 21 Copynumber: 4.1 Consensus size: 21
7035632 TAAAGAAAAT
7035642 AAAAAAT-AAAAT-AAAATAA
1 AAAAAATGAAAATAAAAATAA
*
7035661 AAAAAATGAAAATAAAAAAAA
1 AAAAAATGAAAATAAAAATAA
7035682 AGAAAAAT-AAAATAAAAATAA
1 A-AAAAATGAAAATAAAAATAA
*
7035703 AAATAATATGAAGATAAAAATAA
1 AAA-AA-ATGAAAATAAAAATAA
7035726 AA
1 AA
7035728 GAATATTAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.12
20 7 0.12
21 22 0.38
22 8 0.14
23 14 0.24
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAAAATGAAAATAAAAATAA
Found at i:7035737 original size:17 final size:16
Alignment explanation
Indices: 7035633--7035730 Score: 84
Period size: 15 Copynumber: 6.4 Consensus size: 16
7035623 AATTTTATTT
7035633 AAAGAAAATAAAAAATA
1 AAAGAAAAT-AAAAATA
*
7035650 AAATAAAATAAAAA-A
1 AAAGAAAATAAAAATA
*
7035665 AATGAAAATAAAAA-A
1 AAAGAAAATAAAAATA
7035680 AAAGAAAA-ATAAAAT-
1 AAAGAAAATA-AAAATA
7035695 --A-AAAATAAAAATA
1 AAAGAAAATAAAAATA
* *
7035708 ATATGAAGATAAAAATA
1 A-AAGAAAATAAAAATA
7035725 AAAGAA
1 AAAGAA
7035731 TATTAAACAA
Statistics
Matches: 66, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
12 9 0.14
13 2 0.03
14 1 0.02
15 25 0.38
16 9 0.14
17 20 0.30
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (16 bp):
AAAGAAAATAAAAATA
Found at i:7036649 original size:17 final size:17
Alignment explanation
Indices: 7036609--7036669 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
7036599 TAAATATATT
7036609 AATAGATAACA-AAAAAA
1 AATAGATAA-ATAAAAAA
*
7036626 AATTAGATAAATAAAAGA
1 AA-TAGATAAATAAAAAA
* *
7036644 AATAGATAAATAATAAT
1 AATAGATAAATAAAAAA
7036661 AATA-ATAAA
1 AATAGATAAA
7036670 AAGATAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
16 5 0.13
17 19 0.50
18 14 0.37
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (17 bp):
AATAGATAAATAAAAAA
Found at i:7036674 original size:24 final size:24
Alignment explanation
Indices: 7036589--7036713 Score: 80
Period size: 24 Copynumber: 5.2 Consensus size: 24
7036579 AATTAATCAA
*
7036589 AATAATAAGATAAATATATTAATAGAT
1 AATAAAAAGATAAATA-A-TAATA-AT
*
7036616 AACAAAAA-A-AAATTAGATAAATAA-
1 AATAAAAAGATAAA-TA-AT-AATAAT
* *
7036640 AAGAAATAGATAAATAATAATAAT
1 AATAAAAAGATAAATAATAATAAT
*
7036664 AATAAAAAGATAAATAATAAAAAT
1 AATAAAAAGATAAATAATAATAAT
* * * *
7036688 -ATTAATAGATAAA-AAAAATAAA
1 AATAAAAAGATAAATAATAATAAT
7036710 AATA
1 AATA
7036714 TATATATTAA
Statistics
Matches: 78, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
22 6 0.08
23 18 0.23
24 29 0.37
25 8 0.10
26 11 0.14
27 6 0.08
ACGTcount: A:0.70, C:0.01, G:0.06, T:0.24
Consensus pattern (24 bp):
AATAAAAAGATAAATAATAATAAT
Found at i:7036681 original size:15 final size:15
Alignment explanation
Indices: 7036661--7036702 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
7036651 AAATAATAAT
7036661 AATAATAAAAAGATA
1 AATAATAAAAAGATA
* *
7036676 AATAATAAAAATATT
1 AATAATAAAAAGATA
7036691 AATAGATAAAAA
1 AATA-ATAAAAA
7036703 AAATAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 17 0.71
16 7 0.29
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (15 bp):
AATAATAAAAAGATA
Found at i:7036727 original size:28 final size:25
Alignment explanation
Indices: 7036651--7036741 Score: 76
Period size: 28 Copynumber: 3.4 Consensus size: 25
7036641 AGAAATAGAT
* *
7036651 AAATAATAATAATAATAAA-AAGATAA
1 AAATAAAAATATTAATAAATAA-A-AA
*
7036677 ATAATAAAAATATTAATAGATAAAAA
1 A-AATAAAAATATTAATAAATAAAAA
**
7036703 AAATAAAAATATATATATTAAATAATGA
1 AAATAAAAATAT-TA-A-TAAATAAAAA
7036731 AAATAAAAATA
1 AAATAAAAATA
7036742 AAAGCCTATT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
25 11 0.20
26 6 0.11
27 17 0.31
28 20 0.37
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.26
Consensus pattern (25 bp):
AAATAAAAATATTAATAAATAAAAA
Found at i:7044377 original size:54 final size:54
Alignment explanation
Indices: 7044271--7044397 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 54
7044261 ATTGATTATG
* * *
7044271 TTAAGGCTTTATGCCAACATGCCTAACGTTCCCCTGTGCACCACATTTATTGCA
1 TTAAGGCTTTATGCCAACATGCCTAACGTGCCCCTGTGCACCACACTCATTGCA
** * * * *
7044325 TTAAGGCTTTATGCCAACAT-ATTCAATGTGCCCTTGTGCACCATACTCATTGCG
1 TTAAGGCTTTATGCCAACATGCCT-AACGTGCCCCTGTGCACCACACTCATTGCA
*
7044379 TCAAGG-TTCTATGCCAACA
1 TTAAGGCTT-TATGCCAACA
7044398 AACCAAATAC
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
53 3 0.05
54 58 0.95
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (54 bp):
TTAAGGCTTTATGCCAACATGCCTAACGTGCCCCTGTGCACCACACTCATTGCA
Found at i:7049981 original size:16 final size:16
Alignment explanation
Indices: 7049962--7049996 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7049952 AATCATGCAA
7049962 AAATAAATAAACAAAC
1 AAATAAATAAACAAAC
*
7049978 AAATAAATAAATAAAC
1 AAATAAATAAACAAAC
7049994 AAA
1 AAA
7049997 ATACCAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (16 bp):
AAATAAATAAACAAAC
Found at i:7050518 original size:30 final size:32
Alignment explanation
Indices: 7050452--7050519 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
7050442 GAAAACCTAT
*
7050452 CAAAAAATTCAATTGGCGCTAGAAAATTTTAC
1 CAAAAAATTCAATTGGCGCTAGAAAATTTCAC
*
7050484 CAAAAAATTCAATTGGTG-TCA-AAAA-TTCAC
1 CAAAAAATTCAATTGGCGCT-AGAAAATTTCAC
7050514 CAAAAA
1 CAAAAA
7050520 CTAGAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 10 0.30
31 5 0.15
32 18 0.55
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.25
Consensus pattern (32 bp):
CAAAAAATTCAATTGGCGCTAGAAAATTTCAC
Found at i:7050680 original size:23 final size:23
Alignment explanation
Indices: 7050654--7050720 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
7050644 TCTATTTGCA
*
7050654 AACTGCCTTTCTTGTGTGTGCTG
1 AACTGCCTTTTTTGTGTGTGCTG
* *
7050677 AACTACCTTTTTTGTGTGTGTTG
1 AACTGCCTTTTTTGTGTGTGCTG
*
7050700 AATTG-CTTTTTCTGTGTGTGC
1 AACTGCCTTTTT-TGTGTGTGC
7050721 CTTTTCTGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
22 6 0.16
23 31 0.84
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.49
Consensus pattern (23 bp):
AACTGCCTTTTTTGTGTGTGCTG
Found at i:7051294 original size:44 final size:45
Alignment explanation
Indices: 7051244--7051450 Score: 230
Period size: 44 Copynumber: 4.7 Consensus size: 45
7051234 TCCCCTAAGC
* *
7051244 AGAGGCT-TACAACTTTTGAAAAAATAAATACA-TCTCCTCTAAAT
1 AGAGGCTCAACAACTTTTGAAAAAATAAATA-AGGCTCCTCTAAAT
* * *
7051288 AGAGGCTCAACGAC-TTTGAAAAAATATATAAAGCTCCTCT-AAT
1 AGAGGCTCAACAACTTTTGAAAAAATAAATAAGGCTCCTCTAAAT
* * * *
7051331 CAAAGGCTCAGCAACTTTT-AAAAAATAAATAAGGCTCTTCTAAGT
1 -AGAGGCTCAACAACTTTTGAAAAAATAAATAAGGCTCCTCTAAAT
* * *
7051376 AAAGGCTCAACAACTTTTG-AAAAATAAATAAGGCTCATCTAAGT
1 AGAGGCTCAACAACTTTTGAAAAAATAAATAAGGCTCCTCTAAAT
*
7051420 AGAGGCTCAACAACTTTTG-GAAAATAAATAA
1 AGAGGCTCAACAACTTTTGAAAAAATAAATAA
7051451 AGGCATAGAC
Statistics
Matches: 142, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
43 4 0.03
44 129 0.91
45 9 0.06
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.26
Consensus pattern (45 bp):
AGAGGCTCAACAACTTTTGAAAAAATAAATAAGGCTCCTCTAAAT
Found at i:7051705 original size:16 final size:16
Alignment explanation
Indices: 7051680--7051729 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
7051670 CTCAAGAATT
*
7051680 TTTAGGTTTGTAAGAA
1 TTTAGATTTGTAAGAA
* *
7051696 TTTAGATTTGCAAAAA
1 TTTAGATTTGTAAGAA
* *
7051712 TTTAGCTTCGTAAGAA
1 TTTAGATTTGTAAGAA
7051728 TT
1 TT
7051730 CAAATTTGCA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42
Consensus pattern (16 bp):
TTTAGATTTGTAAGAA
Found at i:7051725 original size:32 final size:32
Alignment explanation
Indices: 7051680--7051740 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
7051670 CTCAAGAATT
* * * *
7051680 TTTAGGTTTGTAAGAATTTAGATTTGCAAAAA
1 TTTAGCTTCGTAAGAATTCAAATTTGCAAAAA
7051712 TTTAGCTTCGTAAGAATTCAAATTTGCAA
1 TTTAGCTTCGTAAGAATTCAAATTTGCAA
7051741 GATTTCAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (32 bp):
TTTAGCTTCGTAAGAATTCAAATTTGCAAAAA
Found at i:7051742 original size:16 final size:17
Alignment explanation
Indices: 7051723--7051756 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7051713 TTAGCTTCGT
7051723 AAGAATTCAA-ATTTGC
1 AAGAATTCAATATTTGC
*
7051739 AAGATTTCAATATTTGC
1 AAGAATTCAATATTTGC
7051756 A
1 A
7051757 TTTGTGAGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
AAGAATTCAATATTTGC
Found at i:7052088 original size:21 final size:21
Alignment explanation
Indices: 7052062--7052281 Score: 251
Period size: 21 Copynumber: 10.3 Consensus size: 21
7052052 GGGTTCACAT
7052062 CTCAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* *
7052083 CTCAAACATTCACATTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
* *
7052105 CTTAACGATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
* *
7052127 TTCAAAGATTCTCATTTAAAA
1 CTCAAAGATTCTCATTTGAAA
* * *
7052148 CTTAAATATTCTTATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
*
7052169 CTAAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* * *
7052190 CTCAAATATTCTTATTTAAAAA
1 CTCAAAGATTCTCATTT-GAAA
* **
7052212 TTCAAAGATTCTCATTAAAAA
1 CTCAAAGATTCTCATTTGAAA
*
7052233 CTCAAATATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
7052255 CTCAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
7052276 CTCAAA
1 CTCAAA
7052282 ATTTTATCTT
Statistics
Matches: 165, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
21 94 0.57
22 71 0.43
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.35
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:7052148 original size:43 final size:43
Alignment explanation
Indices: 7052062--7052281 Score: 273
Period size: 43 Copynumber: 5.1 Consensus size: 43
7052052 GGGTTCACAT
* * *
7052062 CTCAAAGATTCTCATTTG-AAACTCAAACATTCACATTTGAAAA
1 CTCAAATATTCTCATTTGAAAACTCAAAGATTCTCATTT-AAAA
* ** *
7052105 CTTAACGATTCTCATTTGAAAATTCAAAGATTCTCATTTAAAA
1 CTCAAATATTCTCATTTGAAAACTCAAAGATTCTCATTTAAAA
* * * *
7052148 CTTAAATATTCTTATTTG-AAACTAAAAGATTCTCATTTGAAA
1 CTCAAATATTCTCATTTGAAAACTCAAAGATTCTCATTTAAAA
* * * *
7052190 CTCAAATATTCTTATTTAAAAATTCAAAGATTCTCATTAAAAA
1 CTCAAATATTCTCATTTGAAAACTCAAAGATTCTCATTTAAAA
*
7052233 CTCAAATATTCTCATTTGAAAACTCAAAGATTCTCATTTGAAA
1 CTCAAATATTCTCATTTGAAAACTCAAAGATTCTCATTTAAAA
7052276 CTCAAA
1 CTCAAA
7052282 ATTTTATCTT
Statistics
Matches: 153, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
42 37 0.24
43 99 0.65
44 17 0.11
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.35
Consensus pattern (43 bp):
CTCAAATATTCTCATTTGAAAACTCAAAGATTCTCATTTAAAA
Found at i:7052154 original size:107 final size:107
Alignment explanation
Indices: 7052065--7052266 Score: 264
Period size: 107 Copynumber: 1.9 Consensus size: 107
7052055 TTCACATCTC
* * * *
7052065 AAAGATTCTCATTTGAAACTCAAACATTCACATTTGAAAACTT-AACGATTCTCATTTGAAAATT
1 AAAGATTCTCATTTGAAACTCAAACATTCACATTT-AAAAATTCAAAGATTCTCA-TTAAAAACT
* *
7052129 CAAAGATTCTCATTT-AAAACTTAAATATTCTTATTTGAAACTA
64 CAAAGATTCTCATTTGAAAACTTAAATATTCTTAGTTCAAACTA
* **
7052172 AAAGATTCTCATTTGAAACTCAAATATTCTTATTTAAAAATTCAAAGATTCTCATTAAAAACTCA
1 AAAGATTCTCATTTGAAACTCAAACATTCACATTTAAAAATTCAAAGATTCTCATTAAAAACTCA
* * *
7052237 AATATTCTCATTTGAAAACTCAAAGATTCT
66 AAGATTCTCATTTGAAAACTTAAATATTCT
7052267 CATTTGAAAC
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
106 27 0.33
107 56 0.67
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (107 bp):
AAAGATTCTCATTTGAAACTCAAACATTCACATTTAAAAATTCAAAGATTCTCATTAAAAACTCA
AAGATTCTCATTTGAAAACTTAAATATTCTTAGTTCAAACTA
Found at i:7053454 original size:9 final size:8
Alignment explanation
Indices: 7053436--7053475 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
7053426 TCCTTTTGCA
7053436 TTTTTCAT
1 TTTTTCAT
7053444 TTTTCTCAT
1 TTTT-TCAT
**
7053453 TTTTTTTT
1 TTTTTCAT
7053461 TTTTTCAT
1 TTTTTCAT
7053469 TTTTTCA
1 TTTTTCA
7053476 CCCCATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTCAT
Found at i:7053473 original size:16 final size:16
Alignment explanation
Indices: 7053429--7053473 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7053419 TTTTCTCTCC
* *
7053429 TTTTGCATTTTTCATT
1 TTTTTCATTTTTTATT
* *
7053445 TTTCTCATTTTTTTTT
1 TTTTTCATTTTTTATT
7053461 TTTTTCATTTTTT
1 TTTTTCATTTTTT
7053474 CACCCCATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.78
Consensus pattern (16 bp):
TTTTTCATTTTTTATT
Found at i:7053860 original size:16 final size:16
Alignment explanation
Indices: 7053839--7053869 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7053829 GTGGCATTCA
7053839 TTTTTTCTTTTTTTGG
1 TTTTTTCTTTTTTTGG
*
7053855 TTTTTTTTTTTTTTG
1 TTTTTTCTTTTTTTG
7053870 TGACAGGTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (16 bp):
TTTTTTCTTTTTTTGG
Found at i:7053941 original size:12 final size:12
Alignment explanation
Indices: 7053924--7053960 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
7053914 AACCTGTTGA
7053924 ATTCTTTTGCCT
1 ATTCTTTTGCCT
7053936 ATTCTTTTGCCT
1 ATTCTTTTGCCT
7053948 ATTCTTTTGCCT
1 ATTCTTTTGCCT
7053960 A
1 A
7053961 GGCTTCAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.11, C:0.24, G:0.08, T:0.57
Consensus pattern (12 bp):
ATTCTTTTGCCT
Found at i:7056854 original size:50 final size:50
Alignment explanation
Indices: 7056759--7056857 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 50
7056749 TTTTATTTTT
* **
7056759 ATTTCTAAATTTTCTATCATTTGGGTCAATTTAAAATTTTCTTTTCTTTG
1 ATTTCTAAATTTTCTACCATTTGGGTCAATTTAAAATTTAATTTTCTTTG
* *
7056809 ATTTCTAAATTTTCTACCATTTGGGTCTATTT-AGATATTAATTTTCTTT
1 ATTTCTAAATTTTCTACCATTTGGGTCAATTTAAAAT-TTAATTTTCTTT
7056858 TTTTTTATCT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 3 0.07
50 40 0.93
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (50 bp):
ATTTCTAAATTTTCTACCATTTGGGTCAATTTAAAATTTAATTTTCTTTG
Found at i:7057302 original size:4 final size:4
Alignment explanation
Indices: 7057293--7057323 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
7057283 AATCATGTAA
*
7057293 AAAT AAAT AAAC AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
7057324 ATACCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:7057619 original size:16 final size:16
Alignment explanation
Indices: 7057595--7057630 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7057585 TTTTTTTTTT
*
7057595 TTTTGTTCCCTCTTTC
1 TTTTCTTCCCTCTTTC
*
7057611 TTTTCTTCCCTTTTTC
1 TTTTCTTCCCTCTTTC
7057627 TTTT
1 TTTT
7057631 TTTCTCTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTCTTCCCTCTTTC
Found at i:7058336 original size:18 final size:18
Alignment explanation
Indices: 7058310--7058351 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7058300 ATAATCCACG
* *
7058310 AAAATATAAAAAATAAAT
1 AAAAAATAAAAAAAAAAT
7058328 AAAAAATAAAAAAAAAAT
1 AAAAAATAAAAAAAAAAT
7058346 AAAAAA
1 AAAAAA
7058352 GGATAATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAAATAAAAAAAAAAT
Found at i:7058349 original size:11 final size:11
Alignment explanation
Indices: 7058317--7058351 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
7058307 ACGAAAATAT
*
7058317 AAAAAATAAAT
1 AAAAAATAAAA
7058328 AAAAAATAAAA
1 AAAAAATAAAA
7058339 AAAAAATAAAA
1 AAAAAATAAAA
7058350 AA
1 AA
7058352 GGATAATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (11 bp):
AAAAAATAAAA
Found at i:7059257 original size:44 final size:44
Alignment explanation
Indices: 7059191--7059278 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
7059181 GGAGTTGAAT
*
7059191 GTTTGTAAATTTAGTTTCAAAGCAAAAGAAAGGTAAAAGCTAAA
1 GTTTGTAAATTCAGTTTCAAAGCAAAAGAAAGGTAAAAGCTAAA
*
7059235 GTTTGTAAATTCAGTTTTAAAGCAAAAGAAAGGTAAAAGCTAAA
1 GTTTGTAAATTCAGTTTCAAAGCAAAAGAAAGGTAAAAGCTAAA
7059279 AATAGCTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.48, C:0.07, G:0.18, T:0.27
Consensus pattern (44 bp):
GTTTGTAAATTCAGTTTCAAAGCAAAAGAAAGGTAAAAGCTAAA
Found at i:7060173 original size:21 final size:20
Alignment explanation
Indices: 7060133--7060184 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
7060123 TTGAAGAAAA
7060133 TAATGATTTTTGATAATTCT
1 TAATGATTTTTGATAATTCT
7060153 TGAA-GATTTTTGA-AAGTTTCT
1 T-AATGATTTTTGATAA--TTCT
7060174 TAATGATTTTT
1 TAATGATTTTT
7060185 CGATGATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
19 2 0.07
20 12 0.43
21 14 0.50
ACGTcount: A:0.29, C:0.04, G:0.13, T:0.54
Consensus pattern (20 bp):
TAATGATTTTTGATAATTCT
Found at i:7064779 original size:25 final size:25
Alignment explanation
Indices: 7064745--7064794 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7064735 CAAGTAAGTC
7064745 CCAGAATTTCACCAAAATTTTTCTT
1 CCAGAATTTCACCAAAATTTTTCTT
7064770 CCAGAATTTCACCAAAATTTTTCTT
1 CCAGAATTTCACCAAAATTTTTCTT
7064795 AAGCACTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (25 bp):
CCAGAATTTCACCAAAATTTTTCTT
Found at i:7066025 original size:50 final size:50
Alignment explanation
Indices: 7065967--7066061 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
7065957 TCAAAGAATT
7065967 CAAAAGATTTGATGTTGAATTGAAGGAAAACGGACTTCACTTCAAGAGTC
1 CAAAAGATTTGATGTTGAATTGAAGGAAAACGGACTTCACTTCAAGAGTC
* * * *
7066017 CAAAAGATTTGATTTTGCATTGAAGGAATATGGACTTCACTTCAA
1 CAAAAGATTTGATGTTGAATTGAAGGAAAACGGACTTCACTTCAA
7066062 TGATTACTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (50 bp):
CAAAAGATTTGATGTTGAATTGAAGGAAAACGGACTTCACTTCAAGAGTC
Found at i:7068958 original size:6 final size:6
Alignment explanation
Indices: 7068947--7069014 Score: 57
Period size: 6 Copynumber: 11.3 Consensus size: 6
7068937 TTTTTAATTC
* * *
7068947 TAGTTT TAGTTT TAGTTT TATTTTT TAGTTT TA-TTT CATTTT TAGTTT
1 TAGTTT TAGTTT TAGTTT TA-GTTT TAGTTT TAGTTT TAGTTT TAGTTT
* * * *
7068995 CAATTT TAATTT TAATTT TA
1 TAGTTT TAGTTT TAGTTT TA
7069015 TTATTCTTAG
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
5 4 0.08
6 43 0.83
7 5 0.10
ACGTcount: A:0.22, C:0.03, G:0.07, T:0.68
Consensus pattern (6 bp):
TAGTTT
Found at i:7068972 original size:13 final size:13
Alignment explanation
Indices: 7068947--7068982 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7068937 TTTTTAATTC
*
7068947 TAGTTTTA-GTTT
1 TAGTTTTATTTTT
7068959 TAGTTTTATTTTT
1 TAGTTTTATTTTT
7068972 TAGTTTTATTT
1 TAGTTTTATTT
7068983 CATTTTTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 8 0.36
13 14 0.64
ACGTcount: A:0.17, C:0.00, G:0.11, T:0.72
Consensus pattern (13 bp):
TAGTTTTATTTTT
Found at i:7068988 original size:17 final size:19
Alignment explanation
Indices: 7068950--7068994 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
7068940 TTAATTCTAG
*
7068950 TTTTAGTTTTAGTTTTATT
1 TTTTAGTTTTAGTTTCATT
7068969 TTTTAGTTTTA-TTTCA-T
1 TTTTAGTTTTAGTTTCATT
7068986 TTTTAGTTT
1 TTTTAGTTT
7068995 CAATTTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 10 0.40
18 4 0.16
19 11 0.44
ACGTcount: A:0.16, C:0.02, G:0.09, T:0.73
Consensus pattern (19 bp):
TTTTAGTTTTAGTTTCATT
Found at i:7069059 original size:10 final size:9
Alignment explanation
Indices: 7069034--7069058 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7069024 GTCAAACATT
7069034 AAAAAAATA
1 AAAAAAATA
7069043 AAAAAAATA
1 AAAAAAATA
7069052 AAAAAAA
1 AAAAAAA
7069059 AAGAAAGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAATA
Done.