Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 330 of 402
Found at i:30554861 original size:26 final size:26
Alignment explanation
Indices: 30554820--30554873 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
30554810 CTGATCCGAT
30554820 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
30554846 CTTAGACTGAGG-ATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTTCGTATG
30554872 CT
1 CT
30554874 AAGTCAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30555972 original size:159 final size:158
Alignment explanation
Indices: 30555578--30555978 Score: 385
Period size: 158 Copynumber: 2.5 Consensus size: 158
30555568 AACTCTGTAT
* * **
30555578 GCTTATACATGGAATGAACTCCGTATGCCGAAGCTAACCCACGTAACGAGCGTGCGGGCGCTCAG
1 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *
30555643 TCGGCCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCTGGCGTGCTGTCAATCC
66 TCGGCCGGAGAGGCAGAATGCACAAGCCGAGAATCGACCCGGTCCCCCTGGCATGCTGCCAATCC
* * * *
30555708 TTCTGCCGCAACCTTCGGTTCGGTCCAA
131 TGCTGCCACAACCCTCAGTTCGGTCCAA
* ** * * ** * *
30555736 TCTTATAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCATTAAACGAGCGTGCGGGCACTGA
1 GCTTATACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* ** * * * * * * * **
30555800 GCCAACCGAAGAGGCATAATGCGCAAGCTGAGAATCGACCTGGTCCCCCTCTGCATGTTGCCGGT
65 GTCGGCCGGAGAGGCAGAATGCACAAGCCGAGAATCGACCCGGTCCCCCT-GGCATGCTGCCAAT
* *
30555865 CCTGCTGCCACAACCCTCAG-TCTGG-CTAGG
129 CCTGCTGCCACAACCCTCAGTTC-GGTCCA-A
* * * *
30555895 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAA
1 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
*
30555960 TTGGCCGGAGAGGCAGAAT
66 TCGGCCGGAGAGGCAGAAT
30555979 CTGCAAGTCG
Statistics
Matches: 185, Mismatches: 53, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.01
158 94 0.51
159 89 0.48
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGCAGAATGCACAAGCCGAGAATCGACCCGGTCCCCCTGGCATGCTGCCAATCC
TGCTGCCACAACCCTCAGTTCGGTCCAA
Found at i:30556090 original size:26 final size:26
Alignment explanation
Indices: 30556054--30556106 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30556044 CCAGTTTGAT
30556054 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
30556080 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
30556106 C
1 C
30556107 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:30556400 original size:355 final size:351
Alignment explanation
Indices: 30555737--30557577 Score: 1450
Period size: 343 Copynumber: 5.4 Consensus size: 351
30555727 TCGGTCCAAT
* ** ** *
30555737 CTTATACTGGGAATGAACTTTGTATGCATAAGTCAACCCATTAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** * * * *
30555802 CAACCGAAGAGGCATAATGCGCAAGCTGAGAATC-GACCTGGTCCCCCTCTGCATG-T-T-G---
66 CGGCCGAAGAGGCATAATGCGCAAGCCG-GGATCAG-CCCGGTCCCCCTCTGCGTGCTATCGATC
* * *
30555860 CC--G--GTCCTGCTGCCACAACCCTCAG-TCTGGCTAGGGCTTAGACATGGAATGAACTCCCTA
129 CCGTGCAGTCCTACTGCCACAACCCTCGGTTC-GGCTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * * *
30555920 TGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAATTGGCCGGAGAGGCAGAAT-CTGCA
193 TGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGTCGACTGGAGAGGCAGAATGC-GCA
* * * * ** *
30555984 AGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTG-CTGATCCT-GTTATCGCAACCATCGATCCA
257 AGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-GATCCTACTGCT-GCAACCCTCGATCCA
*
30556047 GTTTGATCTTAGACTGGGAATGAACTTCATATG
320 GTTTGATCTTAGACTGGGAATGAAC-TCGTATG
* * * **
30556080 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * *
30556145 CGACCGAAGAGGCATAATGCGTAAGCCTGGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCC
66 CGGCCGAAGAGGCATAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* * *
30556210 CGATGCCAGTCCTACTGCAACAACCCTCGGTTCGGCCGGGGCTTAGACATGGAATGAACTCCGTA
130 CG-TG-CAGTCCTACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * * * * *
30556275 TGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGTTCAGTCGACTGGAAAGGCAGAATGCACAA
193 TGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGTCGACTGGAGAGGCAGAATGCGCAA
* ** * * *
30556340 GCCGGGGATCAGTTCGGTCCCCCCTGCGTGCTGTAGATCCTGCTGCTGTAA-CC-C--T-C----
258 GCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGATCCAGTT
30556396 -GATC-----C----AAT---CT-G-AT-
323 TGATCTTAGACTGGGAATGAACTCGTATG
* * * * * ** *
30556409 CTTAGACTGGCAATGAACTTCGTATGCATAAGTTAACCCATGAAACGAGCGTTCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
30556474 TGGCCGAAGAGGTATAATGCACAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTACTATCGAT-C
66 CGGCCGAAGAGGCATAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* * *
30556538 C---C-G-----CTGCCATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCTATG
130 CGTGCAGTCCTACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
** * * * * * * *
30556594 CCTAAGCCAATGCATGAAACGGGTGTACAGGCGCTCAG-CCAGTTGGAGGGGCAGAATGCACAAG
195 CCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGTCGA-CTGGAGAGGCAGAATGCGCAAG
* ** * **
30556658 CCGAGGATCGGCCCTATCCCCCCTGCGTGCTGCCGATCCTACTGAC-GCAACCCTC-AGTCTGGT
259 CCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTG-CTGCAACCCTCGA-TCCAGT
*
30556721 TCGATCTTAGACTGGGAATGAACTCTGTATG
322 TTGATCTTAGACTGGGAATGAACTC-GTATG
* * * * ** *
30556752 CTTATACTAGGG-ATAAACTCCGTACGCATAAGTTAACCCACGAAACGAGCGTGCGATCACTGAG
1 CTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
30556816 CCGGCCGAAGAGGCATAATGCGCAAGTCGGAGATCAGCCCGGTCCCCCTCTGCGTG----C--T-
65 CCGGCCGAAGAGGCATAATGCGCAAGCCGG-GATCAGCCCGGTCCCCCTCTGCGTGCTATCGATC
** * * *
30556874 --GT-CAGTCCCGCTGCCACAACCTTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
129 CCGTGCAGTCCTACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * *
30556936 GCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGTAGAATGCGTAAG
194 GCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGTCGACTGGAGAGGCAGAATGCGCAAG
* * * *
30557001 CTGGGGACCTGCCCGGT-CCCCCTGCGTGCTGTCGATCCTACTG-TCGCAACCCTCGGTCC-GAT
259 CCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCT-GCAACCCTCGATCCAG-T
30557063 TTGATCTTAGACTGGGAATGAACTCTGTATG
322 TTGATCTTAGACTGGGAATGAACTC-GTATG
* * ** * * **
30557094 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCTTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * **
30557159 CGGCCGAAGAGGCATAATACGTAAGTCGAGGATCAGCACGGTCCCTCTTTGCGTGCTGCCGATCC
66 CGGCCGAAGAGGCATAATGCGCAAGCCG-GGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* * * * *
30557224 CGCTGTCGGTCCTACTGCCATAATCCTC-GATCTGGCTGGGGCTTAGACATGGAATGAACTCCGT
130 CG-TG-CAGTCCTACTGCCACAACCCTCGGTTC-GGCTGGGGCTTAGACATGGAATGAACTCCCT
* ** * * * *
30557288 ATGCCTAAACCAACCCACGAAACAAGCGTGCCGGTGCTCAGTCG-GTCGGAGAGGCAGAATGTGC
192 ATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGTCGACT-GGAGAGGCAGAATGCGC
* ** * * * * * * * *
30557352 AAGCTGGGGATCGGTTCGATCCCTCCTACATGCTGCCGATCCTACTGCCGCAACCTTCGATCCAA
256 AAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGATCCAG
* *
30557417 TTTGATCTTAGACTGAGAACGAACTTCGTATG
321 TTTGATCTTAGACTGGGAATGAAC-TCGTATG
* * * *
30557449 CTTAGA-TGTGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGAC-GGCACTCA
1 CTTAGACTG-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTG-CGGGCACTCA
* * * * ** * ** *
30557512 GTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCC-CTATGTGCTGTCGAT
64 GCCGGCCGAAGAGGCATAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGAT
30557576 CC
128 CC
30557578 TACTGTCACA
Statistics
Matches: 1195, Mismatches: 219, Indels: 157
0.76 0.14 0.10
Matches are distributed among these distances:
316 2 0.00
317 133 0.11
318 3 0.00
319 1 0.00
321 1 0.00
322 1 0.00
323 1 0.00
327 4 0.00
328 2 0.00
329 109 0.09
330 2 0.00
332 2 0.00
333 1 0.00
336 6 0.01
337 2 0.00
338 1 0.00
339 3 0.00
340 1 0.00
341 5 0.00
342 166 0.14
343 306 0.26
344 7 0.01
345 5 0.00
346 2 0.00
348 1 0.00
349 2 0.00
350 1 0.00
351 2 0.00
352 2 0.00
353 2 0.00
354 129 0.11
355 281 0.24
356 9 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (351 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCGAAGAGGCATAATGCGCAAGCCGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATCCC
GTGCAGTCCTACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
CTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGTCGACTGGAGAGGCAGAATGCGCAAGCC
GGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGATCCAGTTTGA
TCTTAGACTGGGAATGAACTCGTATG
Found at i:30556594 original size:159 final size:159
Alignment explanation
Indices: 30556231--30556614 Score: 422
Period size: 158 Copynumber: 2.4 Consensus size: 159
30556221 CTACTGCAAC
* *
30556231 AACCCTCGGTTCGGCCGGGGCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAA
1 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAA
* * *
30556295 ACGAGCATGCGGGTGTTCAGTCGACTGGAAAGGCAGAATGCACAAGCCGGGGATCAGTTCGGTCC
66 ACGAGCATGCGGGCGTTCAGTCGACTCGAAAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCC
* * * **
30556360 CCCCTGCGTGCTGTAGATCCTGCTGCTGT
131 CCCCTGCGTACTATAGATCCCGCTGCCAT
* ** ** * **
30556389 AACCCTCGATCCAATCT-GATCTTAGAC-TGGCAATGAACT-TCGTATGCATAAGTTAACCCATG
1 AACCCTCGGTCC-GGCTGGGGCTTAGACATGG-AATGAACTCTCGTATGCCTAAGCCAACCCATG
* * * * * * *
30556451 AAACGAGCGTTCGGGCGTTGAG-CTGGC-CGAAGAGGTATAATGCACAAGCCGGGGATCGGCTCG
64 AAACGAGCATGCGGGCGTTCAGTC-GACTCGAA-AGGCAGAATGCACAAGCCGGGGATCAGCTCG
*
30556514 GTCCCCCTCTGCGTACTATCGATCCCGCTGCCAT
127 GTCCCCC-CTGCGTACTATAGATCCCGCTGCCAT
**
30556548 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAATGCATGAA
1 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAA
30556612 ACG
66 ACG
30556615 GGTGTACAGG
Statistics
Matches: 181, Mismatches: 36, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
157 7 0.04
158 101 0.56
159 68 0.38
160 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAA
ACGAGCATGCGGGCGTTCAGTCGACTCGAAAGGCAGAATGCACAAGCCGGGGATCAGCTCGGTCC
CCCCTGCGTACTATAGATCCCGCTGCCAT
Found at i:30556652 original size:159 final size:158
Alignment explanation
Indices: 30556231--30556685 Score: 443
Period size: 159 Copynumber: 2.9 Consensus size: 158
30556221 CTACTGCAAC
* *
30556231 AACCCTCGGTTCGGCCGGGGCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAA
1 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAA
* * * * * * *
30556295 ACGAGCATGCGGGTGTTCAGTCGACTGGAAAGGCAGAATGCACAAGCCGGGGATCAGTTCGGTCC
66 ACGAGCGTACGGGCGTTCAGCCG-CTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCC
* * * **
30556360 CCCCTGCGTGCTGTAGATCCTGCTGCTGT
130 CCCCTGCGTACTATAGATCCCGCTGCCAT
* ** ** * **
30556389 AACCCTCGATCCAATCT-GATCTTAGAC-TGGCAATGAACT-TCGTATGCATAAGTTAACCCATG
1 AACCCTCGGTCC-GGCTGGGGCTTAGACATGG-AATGAACTCTCGTATGCCTAAGCCAACCCATG
* * * * * * *
30556451 AAACGAGCGTTCGGGCGTTGAGCTGGCCGAAGAGGTATAATGCACAAGCCGGGGATCGGCTCGGT
64 AAACGAGCGTACGGGCGTTCAGC-CGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGT
*
30556516 CCCCCTCTGCGTACTATCGATCCCGCTGCCAT
128 CCCCC-CTGCGTACTATAGATCCCGCTGCCAT
**
30556548 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAATGCATGAA
1 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAA
* * * * * * * * **
30556612 ACGGGTGTACAGGCGCTCAGCCAGTTGGAGGGGCAGAATGCACAAGCCGAGGATCGGCCCTATCC
66 ACGAGCGTACGGGCGTTCAGCC-GCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCC
30556677 CCCCTGCGT
130 CCCCTGCGT
30556686 GCTGCCGATC
Statistics
Matches: 232, Mismatches: 56, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 108 0.47
159 116 0.50
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCATGAA
ACGAGCGTACGGGCGTTCAGCCGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCC
CCCTGCGTACTATAGATCCCGCTGCCAT
Found at i:30556867 original size:672 final size:658
Alignment explanation
Indices: 30555578--30557094 Score: 1688
Period size: 672 Copynumber: 2.3 Consensus size: 658
30555568 AACTCTGTAT
* * * *
30555578 GCTTATACATGGAATGAACTCCGTATGCCGAAGCTAACCCACGTAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
30555643 TCGGCCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCTGGCGTGCTGTCA-ATC
66 TCGACCGGAGAGGTAGAATGCACAAGCCGGGGATCG-CCCGGTCCCCCT-GCGTGCTGT-AGATC
* * * * * ** * *
30555707 CTTCTGCCGCAACCTTCGGTTCGGTCCAATCTTATACTGGGAATGAACTTTGTATGCATAAGTCA
128 CTACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
* * *
30555772 ACCCATTAAACGAGCGTGCGGGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCTGAGAATCG
193 ACCCATGAAACGAGCGTGCGGGCACTGAGCCAACCGAAGAGGCATAATGCACAAGCCGAGAATCG
** * * * *
30555837 ACCTGGTCCCCCTCTGCATGTTGCCGGTCCTGCTGCCACAACCCTCAGTCTGGCTAGGGCTTAGA
258 ACCTGGTCCCCCTCTGCATACTACCGATCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGA
* * ***
30555902 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAATTGGCCG
323 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGGCGCTCAACCAGCCG
* * * * * * *
30555967 GAGAGGCAGAATCTGCAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTGCTGATCCTGTTATC
388 GAGAGGCAGAATCTACAAGCCGAGGATCGGCCTGATCCCCCCTACGTGCTGCCGATCCTCTGATC
* * *
30556032 GCAACCATCGATCCAGTTTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGGATGAA
453 GCAACCATCGATCCAGTTCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTAGGGATAAA
* * * * *
30556097 CTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCATAA
518 CTCCGTACGCATAAGTCAACCCACGAAACGAGCGTGCGGATACTCAGCCGACCGAAGAGGCATAA
* *
30556162 TGCGTAAGCCTGGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCCGATGCCAGTCCTACTG
583 TGCGCAAGCCTGGGATCAGCCCGATCCCCCTCTGCGTG----C--T---G-T--CAGTCCCACTG
* *
30556227 CAACAACCCTCGGTTCGGCCGGG
636 CAACAACCCTCGATCCGGCCGGG
* * * *
30556250 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
30556315 TCGACTGGAAAGGCAGAATGCACAAGCCGGGGATCAGTTCGGTCCCCCCTGCGTGCTGTAGATCC
66 TCGACCGGAGAGGTAGAATGCACAAGCCGGGGATC-GCCCGGT-CCCCCTGCGTGCTGTAGATCC
* * * * * *
30556380 TGCTGCTGTAACCCTCGATCCAATCTGATCTTAGACTGGCAATGAACTTCGTATGCATAAGTTAA
129 TACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
* ** *** * * *
30556445 CCCATGAAACGAGCGTTCGGGCGTTGAGCTGGCCGAAGAGGTATAATGCACAAGCCGGGGATCG-
194 CCCATGAAACGAGCGTGCGGGCACTGAGCCAACCGAAGAGGCATAATGCACAAGCCGAGAATCGA
* * * * * *
30556509 GCTCGGTCCCCCTCTGCGTACTATCGATCCCGCTGCCATAACCCTCGGTCCGGCTGGGGCTTAGA
259 CCT-GGTCCCCCTCTGCATACTACCGATCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGA
* ** ** * * **
30556574 CATGGAATGAACTCTCTATGCCTAAGCCAATGCATGAAACGGGTGTACAGGCGCTCAGCCAGTTG
323 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGGCGCTCAACCAGCCG
* *
30556639 GAGGGGCAGAATGC-ACAAGCCGAGGATCGGCCCT-ATCCCCCCTGCGTGCTGCCGATCCTACTG
388 GAGAGGCAGAAT-CTACAAGCCGAGGATCGG-CCTGATCCCCCCTACGTGCTGCCGATCCT-CTG
* ** * *
30556702 A-CGCAACCCTC-AGTCTGGTTCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTATACTAGGG
450 ATCGCAACCATCGA-TCCAGTTCGATCTTAGACTGGGAATGAACTTC-ATATGCTTAGACTAGGG
* * *
30556764 ATAAACTCCGTACGCATAAGTTAACCCACGAAACGAGCGTGC-GATCACTGAGCCGGCCGAAGAG
513 ATAAACTCCGTACGCATAAGTCAACCCACGAAACGAGCGTGCGGAT-ACTCAGCCGACCGAAGAG
* * * *
30556828 GCATAATGCGCAAGTC-GGAGATCAGCCCGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTGCCACA
577 GCATAATGCGCAAGCCTGG-GATCAGCCCGATCCCCCTCTGCGTGCTGTCAGTCCCACTGCAACA
* *
30556892 ACCTTCGATCCGGCTGGG
641 ACCCTCGATCCGGCCGGG
* * *
30556910 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
30556975 CCGACCGGAGAGGTAGAATGCGTAAGCTGGGGACCTGCCCGGTCCCCCTGCGTGCTGTCGATCCT
66 TCGACCGGAGAGGTAGAATGCACAAGCCGGGGATC-GCCCGGTCCCCCTGCGTGCTGTAGATCCT
*
30557040 ACTG-TCGCAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAAC-TCTGTATGC
130 ACTGCT-GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTC-GTATGC
30557095 TTAGACTGGG
Statistics
Matches: 705, Mismatches: 127, Indels: 39
0.81 0.15 0.04
Matches are distributed among these distances:
658 3 0.00
659 65 0.09
660 117 0.17
662 1 0.00
663 1 0.00
666 1 0.00
668 1 0.00
671 10 0.01
672 493 0.70
673 13 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (658 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGTAGAATGCACAAGCCGGGGATCGCCCGGTCCCCCTGCGTGCTGTAGATCCTA
CTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACC
CATGAAACGAGCGTGCGGGCACTGAGCCAACCGAAGAGGCATAATGCACAAGCCGAGAATCGACC
TGGTCCCCCTCTGCATACTACCGATCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGGCGCTCAACCAGCCGGAG
AGGCAGAATCTACAAGCCGAGGATCGGCCTGATCCCCCCTACGTGCTGCCGATCCTCTGATCGCA
ACCATCGATCCAGTTCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTAGGGATAAACTC
CGTACGCATAAGTCAACCCACGAAACGAGCGTGCGGATACTCAGCCGACCGAAGAGGCATAATGC
GCAAGCCTGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAGTCCCACTGCAACAACCCTCGATC
CGGCCGGG
Found at i:30557104 original size:26 final size:26
Alignment explanation
Indices: 30557068--30557120 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30557058 CCGATTTGAT
*
30557068 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30557094 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30557120 C
1 C
30557121 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30557632 original size:184 final size:184
Alignment explanation
Indices: 30557264--30557611 Score: 453
Period size: 184 Copynumber: 1.9 Consensus size: 184
30557254 TCTGGCTGGG
* * **
30557264 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCGTGCCGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCGTGACGGCACTCAG
* ** ** *
30557329 TCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGTTCGATCCCTCCTACATGCTGCCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATGCTGCCGATCC
* * * *
30557394 TACTGCCGCAACCTTCGATCCAATTTGATCTTAGACTGAGAACGAACTTCGTAT
131 TACTGCCACAACCCTAGATCCAATCTGATCTTAGACTGAGAACGAACTTCGTAT
** * * *
30557448 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGACGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCGTGACGGCACTCAG
* ** *
30557513 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATGCTGCCGATCC
* * **
30557578 TACTGTCACAACCCTAGGTCCGGTCTGATCTTAG
131 TACTGCCACAACCCTAGATCCAATCTGATCTTAG
30557612 GCTAGGAATG
Statistics
Matches: 137, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
184 137 1.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCGTGACGGCACTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATGCTGCCGATCC
TACTGCCACAACCCTAGATCCAATCTGATCTTAGACTGAGAACGAACTTCGTAT
Found at i:30558091 original size:856 final size:855
Alignment explanation
Indices: 30556809--30558357 Score: 2070
Period size: 856 Copynumber: 1.8 Consensus size: 855
30556799 AGCGTGCGAT
* *
30556809 CACTGAGCCGGCCGAAGAGGCATAATGCGCAAGTCGGAGATCAGCCCGGTCCCCCTCTGCGTGCT
1 CACTGAGCCGGCAGAAGAGGCATAATGCGCAAGTCGGAGATCAGCCCAGTCCCCCTCTGCGTGCT
** * **
30556874 GTCAGTCCCGCTGCCACAACCTTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
66 ACCAGTCCCACTGCCACAACCTTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCC
* * * *
30556939 TAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGACCGGAGAGGTAGAATGCGTAAGCTG
131 TAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCAGACCGGAGAGGTAGAATACGCAAGCCG
* * * * * **
30557004 GGGACCTGCCCGGTCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCGATTTGATC
196 AGGACCTGCCCGGTCCCCCTGCGTGCTCTCGATCCTACTGGCGCAACCCTCAGTCCAATCCGATC
* *
30557069 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
261 TTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* ** * * * *
30557134 TAAAACGAGCTTACGGGTGCTCAGCCGGCCGAAGAGGCATAATACGTAAGTCGAGGATCAGCACG
326 TAAAACGAGCATACGGGCACTCAACCGACCGAAGAGGCATAATACGCAAGTAGAGGATCAGCACG
* * * * * * * * * * *
30557199 GTCCCTCTTTGCGTGCTGCCGATCCCGCTGTCGGTCCTACTGCCATAATCCTCGATCTGGCTGGG
391 GTCCCCCTCTGCATACCGCCGATCCCGCTATCGGTCCTACCGCCACAACCCTCGATCCGACTGGG
* * *
30557264 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCGTGCCGGTGCTCAG
456 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCATGCCGGCGCTCAG
* * * * * *
30557329 -TCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGTTCGATCCCTCCTACATGCTGCCGATC
521 CT-GGTCGGAGACGCAGAATGCGCAAGCCGGGGATCGGTCCGATCCCCCCTACATGCTGCCCATC
* * ** *
30557393 CTACTGCCGCAACCTTCGATCCAATTTGATCTTAGACTGAGAACGAACTTCGTATGCTTAGA-TG
585 CTACTGCCGCAACCCTCGATCCAATCTGATCTTAGACTGAGAACGAACCCCATATGCTTAGACTG
*
30557457 TGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGACGGCACTCAGTCGGTCGGA
650 -GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGACGGCACTCAGTCGGTCGGA
30557522 GAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCCTACTGTCAC
714 GAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCCTACTGTCAC
30557587 AACCCTAGGTCCGGTCTGATCTTAGGCTAGGAATGATCTTCGTATGTCTAAGTCAACCCATGAAA
779 AACCCTAGGTCCGGTCTGATCTTAGGCTAGGAATGATCTTCGTATGTCTAAGTCAACCCATGAAA
30557652 TGACCGTACGGG
844 TGACCGTACGGG
* * * **
30557664 CACTGAGCCGGTCAGAA-AGGTATAATGCG-AATGTCGGGGATCTGGTCAGTCCCCCTCTGCGTG
1 CACTGAGCCGG-CAGAAGAGGCATAATGCGCAA-GTCGGAGATCAGCCCAGTCCCCCTCTGCGTG
* * *
30557727 CTACCGGTCCCACTGCCACAACCCTT-GGTTCAACTGGGGCTTAGACATGGAATGAACTCCCTAT
64 CTACCAGTCCCACTGCCACAA-CCTTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTAT
* *
30557791 GCCTAAGCTAACCCACGAAACGGGCGTGCAGGGCGCTCAGCAGACTGGAGAGGTAGAATACGCAA
128 GCCTAAGCCAACCCACGAAACGGGCGTGCA-GGCGCTCAGCAGACCGGAGAGGTAGAATACGCAA
* * * *
30557856 GCCGAGGATC-GACTCGGTCCCCCTGCGTGCTACT-GATCCTGCTGGCGTAACCCTCAGTCCAAT
192 GCCGAGGACCTG-CCCGGTCCCCCTGCGTGCT-CTCGATCCTACTGGCGCAACCCTCAGTCCAAT
* ** *
30557919 CCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGATTGGGGATGAACTTTGTATGCCTACGTC
255 CCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* * * * *
30557984 AACCCATGAAACGAGCATGCGGGCACTCAACCGACTGGAGAGGCATAATGCGCAAGCTAG-GGAT
320 AACCCATAAAACGAGCATACGGGCACTCAACCGACCGAAGAGGCATAATACGCAAG-TAGAGGAT
* * * * *
30558048 TAGCCCGGTCCCCCTCTGCATACCGTCGATCCTGCTATCGGTCCTGCCGCCACAACCCTCGATCC
384 CAGCACGGTCCCCCTCTGCATACCGCCGATCCCGCTATCGGTCCTACCGCCACAACCCTCGATCC
* * ** *
30558113 GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCATGCGGG
449 GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCATGCCGG
* * *
30558178 CGCTCAGCTGGTCGGAGACGTAGAATGCGCAAGCCGGGGATCGGTCCGATCCCCCCTGCCTGCTG
514 CGCTCAGCTGGTCGGAGACGCAGAATGCGCAAGCCGGGGATCGGTCCGATCCCCCCTACATGCTG
* * * ** * *
30558243 CCCATCCTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACCCCATATGCTT
579 CCCATCCTACTGCCGCAACCCTCGATCCAATCTGATCTTAGACTGAGAACGAACCCCATATGCTT
* * *
30558308 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
644 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTG
30558358 CGGGCGCTCA
Statistics
Matches: 586, Mismatches: 99, Indels: 17
0.83 0.14 0.02
Matches are distributed among these distances:
854 2 0.00
855 129 0.22
856 449 0.77
857 6 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (855 bp):
CACTGAGCCGGCAGAAGAGGCATAATGCGCAAGTCGGAGATCAGCCCAGTCCCCCTCTGCGTGCT
ACCAGTCCCACTGCCACAACCTTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCC
TAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCAGACCGGAGAGGTAGAATACGCAAGCCG
AGGACCTGCCCGGTCCCCCTGCGTGCTCTCGATCCTACTGGCGCAACCCTCAGTCCAATCCGATC
TTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
TAAAACGAGCATACGGGCACTCAACCGACCGAAGAGGCATAATACGCAAGTAGAGGATCAGCACG
GTCCCCCTCTGCATACCGCCGATCCCGCTATCGGTCCTACCGCCACAACCCTCGATCCGACTGGG
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCATGCCGGCGCTCAG
CTGGTCGGAGACGCAGAATGCGCAAGCCGGGGATCGGTCCGATCCCCCCTACATGCTGCCCATCC
TACTGCCGCAACCCTCGATCCAATCTGATCTTAGACTGAGAACGAACCCCATATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGACGGCACTCAGTCGGTCGGAGA
GGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCCTACTGTCACAA
CCCTAGGTCCGGTCTGATCTTAGGCTAGGAATGATCTTCGTATGTCTAAGTCAACCCATGAAATG
ACCGTACGGG
Found at i:30558282 original size:355 final size:356
Alignment explanation
Indices: 30557741--30558395 Score: 861
Period size: 355 Copynumber: 1.8 Consensus size: 356
30557731 CGGTCCCACT
* * * *
30557741 GCCACAACCCTTGGTTCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCA
1 GCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
30557806 CGAAACGGGCGTGCAGGGCGCTCAGCAGACTGGAGAGGTAGAATACGCAAGCCGAGGATCGACTC
66 CAAAACGAGCATGCAGGGCGCTCAGCAGACTGGAGACGTAGAATACGCAAGCCGAGGATCGACTC
* * ** *
30557871 GGTCCCCCTGCGTGCTACTGATCCTGCTGGCGTAACCCTCAGTCCAATCCGATCTTAGACTGGAA
131 GATCCCCCTGCCTGCTACCCATCCTGCTGGCGCAACCCTCAGTCCAATCCGATCTTAGACTGGAA
* * * ** * *
30557936 ATGAACTCCGTATGCTTAGATTGGGGATGAACTTTGTATGCCTACGTCAACCCATGAAACGAGCA
196 ATGAACCCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
** *
30558001 TGCGGGCACTCA-ACCGACTGGAGAGGCATAATGCGCAAGCTAGGGATTAGCCCGGTCCCCCTCT
261 TGCGGGCACTCAGACCGACCAGAGAGGCAGAATGCGCAAGCTAGGGATTAGCCCGGTCCCCCTCT
30558065 GCATACCGTCGATCCTGCTATCGGTCCTGCC
326 GCATACCGTCGATCCTGCTATCGGTCCTGCC
* *
30558096 GCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * *
30558161 TAAAATGAGCATGC-GGGCGCTCAGCTG-GTCGGAGACGTAGAATGCGCAAGCCGGGGATCG-GT
66 CAAAACGAGCATGCAGGGCGCTCAGCAGACT-GGAGACGTAGAATACGCAAGCCGAGGATCGACT
* * ** *
30558223 CCGATCCCCCCTGCCTGCTGCCCATCCTGCT-GCTGCAACCCTCGGTCTGATCTGATCTTAGACT
130 -CGAT-CCCCCTGCCTGCTACCCATCCTGCTGGC-GCAACCCTCAGTCCAATCCGATCTTAGACT
*
30558287 GGGAATGAACCCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
192 GGAAATGAACCCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * *
30558352 AGCGTGCGGGCGCTCAGGCCGACCAGAGAGGCAGGATGCGCAAG
257 AGCATGCGGGCACTCAGACCGACCAGAGAGGCAGAATGCGCAAG
30558396 TCGGGGATCG
Statistics
Matches: 253, Mismatches: 42, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
353 2 0.01
354 44 0.17
355 185 0.73
356 22 0.09
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (356 bp):
GCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CAAAACGAGCATGCAGGGCGCTCAGCAGACTGGAGACGTAGAATACGCAAGCCGAGGATCGACTC
GATCCCCCTGCCTGCTACCCATCCTGCTGGCGCAACCCTCAGTCCAATCCGATCTTAGACTGGAA
ATGAACCCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
TGCGGGCACTCAGACCGACCAGAGAGGCAGAATGCGCAAGCTAGGGATTAGCCCGGTCCCCCTCT
GCATACCGTCGATCCTGCTATCGGTCCTGCC
Found at i:30558315 original size:26 final size:26
Alignment explanation
Indices: 30558279--30558331 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30558269 CTGATCTGAT
30558279 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
* * *
30558305 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
30558331 C
1 C
30558332 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:30565496 original size:26 final size:26
Alignment explanation
Indices: 30565445--30565497 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
30565435 CCGGTCTGAT
*
30565445 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
30565471 CTTAGACAT-GGAATGAACTAC-ATATG
1 CTTAGAC-TGGGAATGAACT-CTATATG
30565497 C
1 C
30565498 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:30565989 original size:158 final size:158
Alignment explanation
Indices: 30565471--30566053 Score: 538
Period size: 159 Copynumber: 3.7 Consensus size: 158
30565461 ACTCTGTATG
* * * *
30565471 CTTAGACATGGAATGAACTACATATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
* **
30565536 CGA-CTGGAGAGGCAGAATGCGCAAGCTAGGGA-CCGACCAAGTCCCCCCCTGCGTGCTGTCGAT
66 CGATC-GGAGAGGCAGAATGCGCAAGCTAGGGATCGGA-CTGGT-CCCCCCTGCGTGCTGTCGAT
* *
30565599 CCTACTACCGCAACCCTCGATCC-AGTCTGAT
128 CCTGCTACCGCAACCTTCGATCCGA-TCTGAT
* * * * * *
30565630 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAATCCATGAAATGAGTGTGCAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * * * * *
30565694 CCGATCGGAGAGGCATAATGCGTAAG-TTGAGGATC-GACTCGATCCCCCTCTGTGTGCTG-CTA
65 CCGATCGGAGAGGCAGAATGCGCAAGCTAG-GGATCGGACT-GGTCCCCC-CTGCGTGCTGTCGA
* * ** * *
30565756 GTCCCGCTGCCATAACCTTCGGTCCGAT-TGAGG
127 -TCCTGCTACCGCAACCTTCGATCCGATCTGA-T
* * * *
30565789 CTTAGACATGAAATAAACTCCCTATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCAGGCGCTCAG
* * * * *
30565853 CCGATCGGACAGGCAGAATGCGCAAGCCAGGGATCGGTCTGGTCCCCCATGGGTGCTGTCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGACTGGTCCCCCCTGCGTGCTGTCGATCC
* *
30565918 TGCTATCGCAACCTTCGATCCGATCCGAT
130 TGCTACCGCAACCTTCGATCCGATCTGAT
* * ** *
30565947 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACAAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * * * * * *
30566011 CCGACCAGAGAGGCAGGATGCGTAAGCTGGGGATTGAACTGGT
65 CCGATCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGACTGGT
30566054 GGTAGGTGGG
Statistics
Matches: 338, Mismatches: 69, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 130 0.38
159 199 0.59
160 8 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGACTGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCTTCGATCCGATCTGAT
Found at i:30566681 original size:26 final size:26
Alignment explanation
Indices: 30566643--30566695 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30566633 GGCTCAAAAT
30566643 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30566669 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30566695 C
1 C
30566696 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30567062 original size:159 final size:158
Alignment explanation
Indices: 30566668--30567095 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 158
30566658 AACTCCGTAT
* * *
30566668 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
30566733 CCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCCTATGTGCTATCGATCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCC
** * * * *
30566798 TGCTATCGTAACCCTCGGTTCGGTCTGA
131 CACTACCATAACCCTCAGTTCAGTCTGA
* * * * * * *
30566826 TCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
30566890 GCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTA-CTGG
65 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTACGTGCTATC-GA
* * *
30566954 TCCCACTACCATAGCCCTTAGTTCAG-CTGGG
128 TCCCACTACCATAACCCTCAGTTCAGTCT-GA
* * * * * *
30566985 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
30567050 CTGGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGGTCCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCC
30567096 TCCTGTATGC
Statistics
Matches: 215, Mismatches: 50, Indels: 9
0.78 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 98 0.46
159 115 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCC
CACTACCATAACCCTCAGTTCAGTCTGA
Found at i:30567173 original size:26 final size:26
Alignment explanation
Indices: 30567144--30567196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30567134 CCGGTCTGAT
30567144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30567170 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30567196 C
1 C
30567197 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30567549 original size:26 final size:26
Alignment explanation
Indices: 30567511--30567563 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30567501 CTGGTCTAAT
*
30567511 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30567537 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
30567563 C
1 C
30567564 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30568199 original size:158 final size:158
Alignment explanation
Indices: 30567930--30568431 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 158
30567920 ACTTCGTATG
* * *
30567930 CTTAGACGT-GGAATGAACTCCGTATGCCTAAGCCAATCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * ** * * *
30567994 CCGACCGAAGAGGCAAAATGCGTAAGCTG-GGGACCGGCTCGATCCCCCCTTCGTGCTGTCGATC
65 CCGGCCGAAGAGGCAGAATGCACAAGC-GAGGGATCGACTCGATCCCCCCTACGTGCTGTCGATC
*
30568058 CTGCTACCACAACCCTCGGTCCGGTCTGAT
129 CTGCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * * * *
30568088 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGTTGACC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * ** * * * *
30568153 CGGTCGGAGAGTTATAATGCGCAAGTCGA-GGATCGACTCGATCCCCCTCTACGTACTG-CTGGT
66 CGGCCGAAGAGGCAGAATGCACAAG-CGAGGGATCGACTCGATCCCCC-CTACGTGCTGTC-GAT
* * ** * * **
30568216 CCCGCTGCGACAACCCTCAAT-CTGACTGGGG
128 CCTGCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * * *
30568247 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGTAACGGGCGTGCGGGTGCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * * *
30568311 CCGGCCGAAGAGGCAGAGTGCACAAGCTAGGGATTGGC-CTGGTCCCCCCTGCGTGCTGTCGATC
65 CCGGCCGAAGAGGCAGAATGCACAAGCGAGGGATCGACTC-GATCCCCCCTACGTGCTGTCGATC
* * *
30568375 CTGCTGCCATAACCCTTGGTCCGGTCCGAT
129 CTGCTGCCACAACCCTCGGTCCGGTCTGAT
*
30568405 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
30568432 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 69, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 1 0.00
158 148 0.56
159 114 0.43
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
CGGCCGAAGAGGCAGAATGCACAAGCGAGGGATCGACTCGATCCCCCCTACGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:30568434 original size:26 final size:26
Alignment explanation
Indices: 30568405--30568457 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30568395 CCGGTCCGAT
*
30568405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30568431 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30568457 C
1 C
30568458 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30568999 original size:26 final size:26
Alignment explanation
Indices: 30568959--30569009 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30568949 TGGTTCAATC
30568959 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
30568985 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
30569010 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:30569727 original size:26 final size:26
Alignment explanation
Indices: 30569676--30569728 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30569666 GGCTCAAACT
*
30569676 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30569702 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30569728 C
1 C
30569729 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30570020 original size:26 final size:27
Alignment explanation
Indices: 30569991--30570043 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
30569981 CGGTTTCGAC
*
30569991 CTTAGACTG-GGAATGAACTTCGTATG
1 CTTAGACTGAGGAATGAACTCCGTATG
*
30570017 CTTAGACTGAGGGATGAACTCCGTATG
1 CTTAGACTGAGGAATGAACTCCGTATG
30570044 GCCTAAGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGAGGAATGAACTCCGTATG
Found at i:30570736 original size:26 final size:26
Alignment explanation
Indices: 30570697--30570747 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30570687 GATCTGATCA
30570697 TAGACAGGGAATGAACTCCGTATGCT
1 TAGACAGGGAATGAACTCCGTATGCT
* *
30570723 TAGACTGGGGATGAACTCCGTATGC
1 TAGACAGGGAATGAACTCCGTATGC
30570748 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCGTATGCT
Found at i:30571353 original size:26 final size:26
Alignment explanation
Indices: 30571324--30571376 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30571314 GGCTCAAACT
*
30571324 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30571350 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30571376 C
1 C
30571377 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30571703 original size:26 final size:26
Alignment explanation
Indices: 30571667--30571719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30571657 ACGGTTCAAT
30571667 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30571693 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30571719 C
1 C
30571720 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30572163 original size:184 final size:183
Alignment explanation
Indices: 30571844--30573102 Score: 1024
Period size: 184 Copynumber: 6.6 Consensus size: 183
30571834 TTGCTGCTGG
* * * * * * *
30571844 TCCTGCTACCACAACCCTCGATTCGGTCCGATCTTAGATTGGGAATGAACTCCGTAGGCTTAGAC
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** ** *
30571909 ATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCATGCGGAAGCTCAGTTGGTCAG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTCGG
* * * *
30571974 AGAGGCAGAATGCGTAAGTCGGGGACCGACCCTATCCCTCTTGCGTGCTGTCGA
131 AGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCC-CCTGCGTGCTGTCGA
* * * * * *
30572028 TCCTGCTGCCGCAACCCTCTGTCCGATCTGATCTCAAACTAGGAATG-ACATTCGTATGCTTAGA
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGA
* * * *
30572092 C-TGAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTC
65 CATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTC
* * * * *
30572156 GGAGAGGCCGATCGAAGAGGCAGAATATGCAAGCCAGGGATCGGCCCAATCCCCCCTTGTGTGCT
129 GGAGAGG-C-A--G-A-ATGC-G----T--AAGCCGGGGATCGACCCGAT-CCCCC-TGCGTGCT
*
30572221 G-CTA
179 GTCGA
* * *
30572225 GTACTGCTACCGCAACCCTCGGTCCGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCTTAG
1 -TCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
30572289 ACATGGAATGAACTCTGTGTGCCTAAGCAAACCCATGAAACTAGCATGCGGGCGCTCAGCCGGTC
64 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTC
* * * *
30572354 GGAGAGGCAGAATGCTTAAGCCGAGGATCGACCCGGTCCACCCTACGTGCTGTCGA
129 GGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCC-CCCTGCGTGCTGTCGA
* * * **
30572410 TCCTGTTACCACAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *
30572475 ATGGAATGAACTCCCTATGCCTAAGCCAACCCCA-GAAATGAG-AGTGCGGGCGCTCAGCCAG-C
66 ATGGAATGAACTCCGTATGCCTAAGCCAA-CCCATGAAACGAGCA-TGCGGGCGCTCAGCCGGTC
* * * * * * *
30572537 GGGAAAGGTAGAATACGCAAGCCTGGGTTCGACCCGGTCCACCCTGCGTGCTGTCGA
129 -GGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCC-CCCTGCGTGCTGTCGA
* * *
30572594 TCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAGGCTTAGAC
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * *** * * * **
30572659 ATGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGCGCACGGGCGTTCAGTCGGCCAA
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTCGG
* * * * * * * *
30572724 ATAGGTAGAATGCGCAAGTCGGGTACCAACCCGATTCCCCCTGCGTGTTGTCGA
131 AGAGGCAGAATGCGTAAGCCGGGGATCGACCCGA-TCCCCCTGCGTGCTGTCGA
* * * *
30572778 TCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
30572842 TTGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGTCGACCG
66 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCA---G-CC-
* * * ** * *
30572907 GAGAGGTTGATCGGAGAGGTAGAATACGCAAGCTAGGGATCGGCCC-AGTCCCCCTTGCATGCTG
125 -----G--G-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGA-TCCCCC-TGCGTGCTG
30572971 TCGA
180 TCGA
* * * * *
30572975 TCCTGCTACTGGTCCTACTGCCGTAACCCTCGGTTCGATCCGATCTTAGACTAGGAATGAACTTC
1 TCCTG---CT-G--C--C-G-C--AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * * *
30573040 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCGGGC
54 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGC
30573103 AGAATACGCA
Statistics
Matches: 867, Mismatches: 149, Indels: 93
0.78 0.13 0.08
Matches are distributed among these distances:
183 11 0.01
184 515 0.59
185 30 0.03
186 1 0.00
187 2 0.00
188 2 0.00
189 1 0.00
190 3 0.00
191 1 0.00
192 3 0.00
193 1 0.00
194 2 0.00
195 1 0.00
196 9 0.01
197 60 0.07
198 123 0.14
199 4 0.00
200 2 0.00
201 1 0.00
205 1 0.00
206 1 0.00
207 1 0.00
209 91 0.10
210 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (183 bp):
TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGTCGG
AGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTGTCGA
Found at i:30572480 original size:26 final size:26
Alignment explanation
Indices: 30572442--30572494 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30572432 TTGGTCTGAT
*
30572442 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
30572468 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
30572494 C
1 C
30572495 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:30572846 original size:26 final size:26
Alignment explanation
Indices: 30572810--30572862 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30572800 CCGATCCGAT
*
30572810 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30572836 CTTAGATTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30572862 C
1 C
30572863 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30573048 original size:26 final size:26
Alignment explanation
Indices: 30573019--30573071 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30573009 TCGATCCGAT
*
30573019 CTTAGAC-TAGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30573045 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30573071 C
1 C
30573072 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30573617 original size:159 final size:158
Alignment explanation
Indices: 30573208--30573987 Score: 405
Period size: 159 Copynumber: 4.9 Consensus size: 158
30573198 AACTCCGTAT
* * * *
30573208 GCTTAAACATGGAATGAACTCTGTATGCCTAAGCCAACCCCCGAAATGAGCGTACGGGCGCTC-A
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
30573272 GTCGGTGGGA-AAGCTAGAATGCGTAAGCCGAGGATCGACCCGATCCACCTTGCGTGCTGTCGAT
66 CT-GGCGGGAGAGGC-AGAATGCGTAAGCCGAGGATCGGCCCGATCCACCTTACGTGCTGCCGAT
*** * *
30573336 CCTACTGCTGGAACCTTCAGACCGGTCTGA
129 CCTACTGCCACAACCCTCAGACCGGACTGA
* * * * * * *
30573366 TCTTAGAC-TGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGTTGA
1 GCTTAGACATG-GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
30573430 GCCGGTCGGG-GAGGCATAATGTGCAAGCCAAGGATCGGCCC-AGTCCCCCTCTACGTGCTGCCG
65 ACTGG-CGGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGA-TCCACCT-TACGTGCTGCCG
* * * * * *
30573493 GTCCTGCTGCCACACCCCTCGGTCC-GACTGGG
127 ATCCTACTGCCACAACCCTCAGACCGGACT-GA
* *
30573525 GCTTGGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * ** *
30573590 CTGGCGGGAGAGGCAGAATACGTAAGCCGGGGATCGGCCTGATCCACCCTGCGTGCTATCAATCC
66 CTGGCGGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCACCTTACGTGCTGCCGATCC
* ** * * * *
30573655 TA-TCACCGTAACCCTCCGTCCGGTCCGA
131 TACT-GCCACAACCCTCAGACCGGACTGA
* * * * ** * * * * * * * * *
30573683 TCTTAGA-TTAGGAATGAGCCCCATATGTCTAAGTCAACCAACAAAATGAGCGTTCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * * * * * * * *
30573747 GCCGACCAGAGAGGCATAATGCGCAAGCC-AGGGATCGGCTCGGTCCCCCTCTGCATGCTACCGA
65 ACTGGCGGGAGAGGCAGAATGCGTAAGCCGA-GGATCGGCCCGATCCACCT-TACGTGCTGCCGA
** * * * *
30573811 TCCCGCTGTCACAACCCAC-GATCCAG-CTGGG
128 TCCTACTGCCACAACCCTCAGA-CCGGACT-GA
** * * * * *
30573842 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * * * * **
30573907 CAGGTC-GGAGAGGCAGAATGCACAAGCCGAGGTTCGACCCGGTCCCCCCTACGTGCTATCGATC
66 CTGG-CGGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCACCTTACGTGCTGCCGATC
* *
30573971 CTACTGTCGCAACCCTC
130 CTACTGCCACAACCCTC
30573988 GGTCTAGTCC
Statistics
Matches: 459, Mismatches: 142, Indels: 42
0.71 0.22 0.07
Matches are distributed among these distances:
157 5 0.01
158 219 0.48
159 228 0.50
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CTGGCGGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCACCTTACGTGCTGCCGATCC
TACTGCCACAACCCTCAGACCGGACTGA
Found at i:30573645 original size:317 final size:316
Alignment explanation
Indices: 30573208--30574027 Score: 896
Period size: 317 Copynumber: 2.6 Consensus size: 316
30573198 AACTCCGTAT
* * * * *
30573208 GCTTAAACATGGAATGAACTCTGTATGCCTAAGCCAACCCCCGAAATGAGCGTACGGGCGCTC-A
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * *
30573272 GTCGGTGGGA-AAGCTAGAATGCGTAAGCCGAGGATCGACCCGATCCACCTTGCGTGCTGTCGAT
66 CT-GGCGGGAGAGGC-AGAATGCGTAAGCCGAGGATCGACCCGATCCACCCTGCGTGCTATCGAT
* * * *
30573336 CCTACTGCTGGAACCTTCAGACCGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGTC
129 CCTACTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGTC
* ** ** * * *
30573401 AACCCATGAAACAAGCGTGCGGGCGTTGAGCCGGTCGGGGAGGCATAATGTGCAAGCCAAGGATC
193 AACCAACAAAACAAGCGTGCGGGCGTTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAAGGATC
* * * * * * *
30573466 GGCCCAGTCCCCCTCTACGTGCTGCCGGTCCTGCTGCCACACCCCTCGGTCC-GACTGGG
258 GGCCCAGTCCCCCTCTACATGCTACCGATCCCGCTGCCACAACCCACGATCCAG-CTGGG
*
30573525 GCTTGGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * *
30573590 CTGGCGGGAGAGGCAGAATACGTAAGCCGGGGATCGGCCTGATCCACCCTGCGTGCTATCAATCC
66 CTGGCGGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCACCCTGCGTGCTATCGATCC
* * * * * * * * *
30573655 TA-TCACCGTAACCCTCCGTCCGGTCCGATCTTAGATTAGGAATGAGCCCCATATGTCTAAGTCA
131 TACT-GCTGCAACCCTCAGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCA
** * * *
30573719 ACCAACAAAATGAGCGTTCGGGTGTTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCG
194 ACCAACAAAACAAGCGTGCGGGCGTTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAAGGATCG
* * * *
30573784 GCTCGGTCCCCCTCTGCATGCTACCGATCCCGCTGTCACAACCCACGATCCAGCTGGG
259 GCCCAGTCCCCCTCTACATGCTACCGATCCCGCTGCCACAACCCACGATCCAGCTGGG
** * * * *
30573842 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* ** * * * *
30573907 CAGGTC-GGAGAGGCAGAATGCACAAGCCGAGGTTCGACCCGGTCCCCCCTACGTGCTATCGATC
66 CTGG-CGGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCACCCTGCGTGCTATCGATC
* **
30573971 CTACTG-TCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
130 CTACTGCT-GCAACCCTCAGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGC
30574028 TTAGACTGGG
Statistics
Matches: 412, Mismatches: 83, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
316 1 0.00
317 402 0.98
318 9 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CTGGCGGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCACCCTGCGTGCTATCGATCC
TACTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAAC
CAACAAAACAAGCGTGCGGGCGTTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAAGGATCGGC
CCAGTCCCCCTCTACATGCTACCGATCCCGCTGCCACAACCCACGATCCAGCTGGG
Found at i:30574027 original size:158 final size:157
Alignment explanation
Indices: 30573217--30574027 Score: 599
Period size: 158 Copynumber: 5.1 Consensus size: 157
30573207 TGCTTAAACA
* * * * * * * *
30573217 TGGAATGAACTCTGTATGCCTAAGCCAACCCCCGAAATGAGCGTACGGGCGCTCAGTCGGTGGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGTCGGA
* * * * * * * *
30573282 -AAGCTAGAATGCGTAAGCCGAGGATCGACCCGATCCACCTTGCGTGCTGTCGATCCTACTGCTG
66 GAGGC-AGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCG
* * * * * *
30573346 GAACCTTCAGACCGGTCTGATCTTAGAC
130 CAACCCTCGGTCCAGTCCGATCTTAGAC
* * * * *
30573374 TGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGTTGAGCCGGTCGG
1 TG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGTCGG
* * * * * * ** * *
30573439 GGAGGCATAATGTGCAAGCCAAGGATCGGCCCAGTCCCCCTCTACGTGCTGCCGGTCCTGCTGCC
65 AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCCTACTGCC
* * * * ** *
30573504 ACACCCCTCGGTCC-GACTGGGGCTTGGAC
129 GCAACCCTCGGTCCAGTC-CGATCTTAGAC
* * * *
30573533 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACTGG-CGG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGTC-G
* * * * * * * *
30573597 GAGAGGCAGAATACGTAAGCCGGGGATCGGCCTGATCCACCCTGCGTGCTATCAATCCTA-TCAC
64 GAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACT-GC
* * * *
30573661 CGTAACCCTCCGTCCGGTCCGATCTTAGAT
128 CGCAACCCTCGGTCCAGTCCGATCTTAGAC
* * * * * * * * * * ** *
30573691 TAGGAATGAGCCCCATATGTCTAAGTCAACCAACAAAATGAGCGTTCGGGTGTTGAGCCGACCAG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGTCGG
* * * * ** *
30573756 AGAGGCATAATGCGCAAGCC-AGGGATCGGCTCGGTCCCCCTCTGCATGCTACCGATCCCGCTGT
65 AGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCCTACTGC
* * * * **
30573820 CACAACCCACGATCCAG-CTGGGGCTTAGAC
128 CGCAACCCTCGGTCCAGTC-CGATCTTAGAC
* * * *
30573850 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGTTCAGCAGGTCGG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGTCGG
* * * * *
30573915 AGAGGCAGAATGCACAAGCCGAGGTTCGACCCGGTCCCCCCTACGTGCTATCGATCCTACTGTCG
65 AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCG
*
30573980 CAACCCTCGGTCTAGTCCGATCTTAGAC
130 CAACCCTCGGTCCAGTCCGATCTTAGAC
30574008 TGGGAATGAACTCCGTATGC
1 T-GGAATGAACTCCGTATGC
30574028 TTAGACTGGG
Statistics
Matches: 486, Mismatches: 150, Indels: 35
0.72 0.22 0.05
Matches are distributed among these distances:
157 5 0.01
158 244 0.50
159 232 0.48
160 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGTCGGA
GAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGC
AACCCTCGGTCCAGTCCGATCTTAGAC
Found at i:30574030 original size:26 final size:26
Alignment explanation
Indices: 30574001--30574053 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30573991 CTAGTCCGAT
30574001 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30574027 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30574053 C
1 C
30574054 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30574420 original size:26 final size:26
Alignment explanation
Indices: 30574382--30574434 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30574372 CTGATCCGAT
*
30574382 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30574408 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30574434 C
1 C
30574435 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30574517 original size:368 final size:360
Alignment explanation
Indices: 30573820--30574527 Score: 828
Period size: 368 Copynumber: 1.9 Consensus size: 360
30573810 ATCCCGCTGT
30573820 CACAACCCACGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCACGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * * *
30573885 AAACGGGCGTGTGGGTGTTCAGCAGGTCGGAGAGGCAGAATGCACAAGCCGAGGTTCGACCCGGT
66 AAACGAGCGTGAGGGCGCTAAGCAGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGT
*
30573950 CCCCCCTACGTGCTATCGATCCTACTGTCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAAT
131 CCCCCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAAT
* *
30574015 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATG
196 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATG
* * *
30574080 CGGGCACTCAGCCGACCGGAGAGGCCGATTGAAGAGGCATAATGCGTAAGTCAGGAATCAGCTCG
261 CGGGCACTCA--CGACC---GAGGCCGA-TGAAGAGGCAGAATGCGTAAGCCAGGAATCAGCCCG
30574145 ATCCCCCTCTGCGTGCTGCTAATCCCGTTGCTGGTCCTGTTGC
320 AT-CCCC-CTGCGTGCTGCTAATCCCGTTGCTGGTCCTGTTGC
* ** *
30574188 CACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 CACAACCCACGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* *
30574253 AAACGAGCGTGAGGGCGCTAAGCCA-GTTGGAGAGGCAGAATGCGA-AAGTCGAGGATCGACCCG
66 AAACGAGCGTGAGGGCGCTAAG-CAGGTCGGAGAGGCAGAATGC-ACAAGCCGAGGATCGACCCG
* * *
30574316 GTCCTTCCCTGCGTGCTGTCGATCCTGCAACTGGTCCTGCTACCGTAACCCTCAGTCT-GATCCG
129 GTCC-CCCCTACGTGCTATCGATCCT---ACT-GT-C-G----C--AACCCTCAGTCTAG-TCCG
*
30574380 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
180 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA
* ** ** * *
30574444 CCTACGAAACGAGTGTGCGGGTGCTCA-G-CC-A-GCC-A-G-ATAGGCAGAATGCGTAAGCCGG
244 CCCACGAAACGAGCATGCGGGCACTCACGACCGAGGCCGATGAAGAGGCAGAATGCGTAAGCCAG
*
30574502 GGATC-GACCCGATCCCCCTGCGTGCT
309 GAATCAG-CCCGATCCCCCTGCGTGCT
30574528 ATCGATCCTG
Statistics
Matches: 292, Mismatches: 30, Indels: 38
0.81 0.08 0.11
Matches are distributed among these distances:
366 9 0.03
367 5 0.02
368 142 0.49
369 22 0.08
371 1 0.00
372 6 0.02
373 3 0.01
374 1 0.00
375 1 0.00
377 2 0.01
378 1 0.00
379 1 0.00
380 1 0.00
381 96 0.33
382 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (360 bp):
CACAACCCACGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAACGAGCGTGAGGGCGCTAAGCAGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGT
CCCCCCTACGTGCTATCGATCCTACTGTCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATG
CGGGCACTCACGACCGAGGCCGATGAAGAGGCAGAATGCGTAAGCCAGGAATCAGCCCGATCCCC
CTGCGTGCTGCTAATCCCGTTGCTGGTCCTGTTGC
Found at i:30574777 original size:159 final size:155
Alignment explanation
Indices: 30574408--30574814 Score: 419
Period size: 156 Copynumber: 2.6 Consensus size: 155
30574398 ACTTCGTATG
**
30574408 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAGTGTGCGGGCACTCAGC
* * * * *
30574473 CAGCCAGATAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTATCGATCCTG
65 CAACCAGAGAGGCAGAATGAGTAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTACCGATCCTA
30574538 CTGCCACAACCCTCGTCCGATCCAAT
130 CTGCCACAACCCTCGTCCGATCCAAT
* * * * *
30574564 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCGACCCACAAAATGAGTGTGCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCAACCACGAAACGAGTGTGCGGGCACTCAG
* * * * * * *
30574628 CCAACC-GAGGAGGCATAATGAGTAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGGT
64 CCAACCAGA-GAGGCAGAATGAGTAAGCCGGGGATCGACCCGAT-CCCC-CTGCGTGCTACCGAT
* *
30574692 CCTACTGCCACAACCCTCGATCCGGCTGGC-A-
126 CCTACTGCCACAACCCTCG-TCC-GAT-CCAAT
* * * *
30574723 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCC-AACCACGAAACGAGTGTGCGGGCACTCAGC
** * *
30574788 CGGCCGGAGAGGTAGAATGCA-TAAGCC
65 CAACCAGAGAGGCAGAATG-AGTAAGCC
30574815 AAGGGGTGTG
Statistics
Matches: 204, Mismatches: 35, Indels: 21
0.78 0.13 0.08
Matches are distributed among these distances:
155 3 0.01
156 83 0.41
157 8 0.04
158 30 0.15
159 72 0.35
160 7 0.03
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGTGTGCGGGCACTCAGCC
AACCAGAGAGGCAGAATGAGTAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTACCGATCCTAC
TGCCACAACCCTCGTCCGATCCAAT
Found at i:30576257 original size:26 final size:26
Alignment explanation
Indices: 30576217--30576266 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30576207 CGGTTTGATT
30576217 TTAGACTGGGAATGAACTCCATATAC
1 TTAGACTGGGAATGAACTCCATATAC
*
30576243 TTAGACTGGGGATGAACTCCATAT
1 TTAGACTGGGAATGAACTCCATAT
30576267 GCCTGAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATAC
Found at i:30577544 original size:13 final size:13
Alignment explanation
Indices: 30577526--30577553 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
30577516 CGGGTGCTCA
30577526 GCCGATCGGAGAG
1 GCCGATCGGAGAG
30577539 GCCGATCGGAGAG
1 GCCGATCGGAGAG
30577552 GC
1 GC
30577554 ATAATGCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.46, T:0.07
Consensus pattern (13 bp):
GCCGATCGGAGAG
Found at i:30579152 original size:26 final size:26
Alignment explanation
Indices: 30579114--30579166 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30579104 GGCTCAAAAT
30579114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30579140 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30579166 C
1 C
30579167 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30579510 original size:159 final size:156
Alignment explanation
Indices: 30579139--30579638 Score: 389
Period size: 159 Copynumber: 3.2 Consensus size: 156
30579129 AACTCCGTAT
** *
30579139 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAG
* ** * * * ** *
30579204 CCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATGGCTCGGTCCCCCTACGTGCTATCGATCCTC
66 CCGGCCAAAGAGGCAGAATGCGCAAGCCAGGGATAACCCGGTCCCCCTACGTGCTATCGATCCTC
30579269 CCACCACAACCCTCAGTCGGATCCGA
131 CCACCACAACCCTCAGTCGGATCCGA
* * * * *
30579295 TCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCATGCGGGCATTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAA
* * * *
30579359 GCCGGCCAAAGAGGCATAATGCGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGGT
65 GCCGGCCAAAGAGGCAGAATGCGCAAGCCAGGGAT-AACCCGGT-CCCC-CTACGTGCTATCGAT
* * * * *
30579424 CC-CGCTACCACAACCCTTAGTCCGGCT-GGG
127 CCTC-CCACCACAACCCTCAGT-CGGATCCGA
* * ** * * * *
30579454 GCTTAGACATGGAGTGAACTCCTTATGCCTAAGCCAACCCATAAAACAAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAG
**** * * * * * * *
30579519 CCGGTTGGAGAGGTAGAATGCGTAAGCC-GAGGATCAGCCCGATCCCTCGACGTGCTGTCGATCC
66 CCGGCCAAAGAGGCAGAATGCGCAAGCCAG-GGAT-AACCCGGTCCCCCTACGTGCTATCGATCC
* ** ** ** *
30579583 TGCTGCCGTAACCCTTGGTCTGATCCGA
129 TCCCACCACAACCCTCAGTCGGATCCGA
* *
30579611 TCTTAGAC-TGGGAATGAAGTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
30579639 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 65, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
155 1 0.00
156 86 0.32
157 55 0.21
158 9 0.03
159 112 0.42
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAG
CCGGCCAAAGAGGCAGAATGCGCAAGCCAGGGATAACCCGGTCCCCCTACGTGCTATCGATCCTC
CCACCACAACCCTCAGTCGGATCCGA
Found at i:30579641 original size:26 final size:26
Alignment explanation
Indices: 30579612--30579664 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30579602 CTGATCCGAT
*
30579612 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30579638 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30579664 C
1 C
30579665 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30579891 original size:158 final size:157
Alignment explanation
Indices: 30579629--30580139 Score: 558
Period size: 158 Copynumber: 3.2 Consensus size: 157
30579619 TGGGAATGAA
* *
30579629 GTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCAG
1 GTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGG
* * * * *
30579694 GTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCT
63 GCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCT
* * * *
30579759 ATTGATCCTATTGTCGCAACCCTCGGTCCG
128 GTCGATCCTACTGTCGCAACCCTCGGTCTG
* *
30579789 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGC
* * * ** * * * * *
30579854 ACTGAGTCTACCGGAGAGGCATAATGAGCAAGTCGGGGATTGGCCTGGTCCCCTTCTGCGTGCTG
65 GCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCC-CCTGCGTGCTG
* * *
30579919 TCGATCCCACTGCCACAACCCTCGGTCTG
129 TCGATCCTACTGTCGCAACCCTCGGTCTG
* ** * * * * **
30579948 G-CTGGGGCTTAGACAT-GGAATGATCTCCCTATGCCTAAGCCAACCCACGAAATGGGCACGCGG
1 GTC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGG
*
30580011 GCGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCT
63 GCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCT
* * * *
30580076 GCCGATCCTACTATCGCAAACCTCGGTCTA
128 GTCGATCCTACTGTCGCAACCCTCGGTCTG
* *
30580106 GTTCGATCTTAGACTAGGAATGAACTCCGTATGC
1 GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
30580140 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 62, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 149 0.53
159 127 0.45
160 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCG
CTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTC
GATCCTACTGTCGCAACCCTCGGTCTG
Found at i:30580157 original size:26 final size:26
Alignment explanation
Indices: 30580113--30580164 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30580103 CTAGTTCGAT
*
30580113 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
30580139 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
30580165 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:30580883 original size:26 final size:26
Alignment explanation
Indices: 30580844--30580896 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30580834 GGCTCAAAAT
30580844 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
30580870 CTTAGACGTG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
30580896 C
1 C
30580897 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:30581164 original size:157 final size:156
Alignment explanation
Indices: 30580869--30581303 Score: 461
Period size: 157 Copynumber: 2.8 Consensus size: 156
30580859 AACTCCGTAT
* * * *
30580869 GCTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGTGCTCA
1 GCTTAGACTG-GGAATGAACTCCATATGCATAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCA
* * * *
30580933 GCCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGAT-GGCCCGGTCCCCCCTACGTGCTGTCGATC
65 GCCGGCCGAAGAGGCAGAATG-GCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
** *
30580997 CTTCCACCACAACCCTCGGTCTAA-TCCGA
129 CCACCACCACAA-CCTCAGTCTAACT-CGA
* * * * * * *
30581026 TCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCAAGAAACAAGCATGCGGGCGTTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
30581091 CCAGCCGAAGAGGCATAATGTGCAAGCCAGGGATCGACCCGGTCCCCTCTGCGTGTTGCCG-TCC
66 CCGGCCGAAGAGGCAGAATG-GCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
** * * *
30581155 CACTGCCACAACCTCAGTCTGACTGGG
130 CACCACCACAACCTCAGTCTAACTCGA
* *
30581182 GCTTAGACAT-GGAATGAACTCCCTATGCGTAAGCCAACCCACA-AAACGAGCGTG-GGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCA-AGAAACGAGCGTGCGGGTGCTC
30581244 AGCCGGCCGAAGAGGCAGAATAGGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTG
64 AGCCGGCCGAAGAGGCAGAAT-GGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTG
30581304 TCAATCCTGT
Statistics
Matches: 225, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
155 56 0.25
156 55 0.24
157 92 0.41
158 22 0.10
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (156 bp):
GCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAG
CCGGCCGAAGAGGCAGAATGGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCC
ACCACCACAACCTCAGTCTAACTCGA
Found at i:30581381 original size:26 final size:26
Alignment explanation
Indices: 30581352--30581404 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30581342 CCGGTCTAAC
* * *
30581352 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAAACAGGGAATGAACACCATATG
*
30581378 CTTAAACATGGAATGAACACCATATG
1 CTTAAACAGGGAATGAACACCATATG
30581404 C
1 C
30581405 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (26 bp):
CTTAAACAGGGAATGAACACCATATG
Found at i:30581720 original size:159 final size:156
Alignment explanation
Indices: 30581377--30581829 Score: 371
Period size: 159 Copynumber: 2.9 Consensus size: 156
30581367 AACTCCGTAT
* * * * *
30581377 GCTTAAACATGGAATGAACACCATATGCCTAAGCCAACCTACGAAACGAGCGTGTGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCAAACC-ACGAAACGAGCGTGCGGGCGCTCAG
* * *
30581442 CCGGTCGAAGAGGCAAAATGCACAAGCCCGAGATCGGCCCAGTCCCCCTACGTGCTATCGATCCT
65 CCGATCGAAGAGGCAAAATGCACAAGCCAGAGATCAGCCCAGTCCCCCTACGTGCTATCGATCCT
** *
30581507 ACTACCGTAACCCTCAGTCTGGTCTGA
130 ACTACCACAACCCTCAGTCTGGACTGA
* ** * * * *
30581534 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAAACCACGAAATGAGTGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CAAACCACGAAACGAGCGTGCGGGCGCTCA
* * * *
30581598 GCCGATC-AGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTACCCCTCTGCGTGCTA-CTG
64 GCCGATCGA-AGAGGCAAAATGCACAAGCCAGAGATCAGCCCAGT-CCCC-CTACGTGCTATC-G
* *
30581661 GT-CTCACTACCACAACCCTCAGTCT-GACTGGG
125 ATCCT-ACTACCACAACCCTCAGTCTGGACT-GA
* * * *
30581693 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAG-CAAACCACGAAACGAG-CGTGCGGGCGCTCA
** * * * * ** * * * *
30581757 ATCGACCGTAGAGGCAGAATGCGCAAGCTGGGGATC-GACCAGGTCCCCCCTGCGTGCTGTCGAT
64 GCCGATCGAAGAGGCAAAATGCACAAGCCAGAGATCAGCCCA-GT-CCCCCTACGTGCTATCGAT
*
30581821 CCTGCTACC
127 CCTACTACC
30581830 GTAACCTTTG
Statistics
Matches: 235, Mismatches: 47, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
156 2 0.01
157 80 0.34
158 35 0.15
159 117 0.50
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGAAGAGGCAAAATGCACAAGCCAGAGATCAGCCCAGTCCCCCTACGTGCTATCGATCCTA
CTACCACAACCCTCAGTCTGGACTGA
Found at i:30581893 original size:26 final size:26
Alignment explanation
Indices: 30581852--30581904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30581842 CCGATCCGAT
*
30581852 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
30581878 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
30581904 C
1 C
30581905 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:30582039 original size:184 final size:184
Alignment explanation
Indices: 30581693--30582062 Score: 469
Period size: 184 Copynumber: 2.0 Consensus size: 184
30581683 TCTGACTGGG
**
30581693 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAAGACATGCGGGTGCTCAA
* * *
30581758 TCGACCGTAGAGGCAGAATGCGCAAGCTGGGGATCGACCAGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCAGATCCCCCCTGCGTGCTGTCGATCC
* * *
30581823 TGCTACCGTAACCTTTGGTCCGATCCGATCTTAGACAGGGAATGAACTTCGTAT
131 TACTACCGTAACCTCTGATCCGATCCGATCTTAGACAGGGAATGAACTTCGTAT
* * *
30581877 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAG-CGTGCGGGTGCTC
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-AAGACATGCGGGTGCTC
* * * * **
30581940 AGCCGACTGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCTTGATCCCCCCTGCGTGCTGTCGAT
64 AACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCAGATCCCCCCTGCGTGCTGTCGAT
** * * * *
30582005 CCTACT-GTGTCAACCCTCT-ATCCGGTCTGATCTTAGACTGGGAATGAACTTTGTAT
129 CCTACTACCGT-AA-CCTCTGATCCGATCCGATCTTAGACAGGGAATGAACTTCGTAT
30582061 GC
1 GC
30582063 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
183 3 0.02
184 151 0.95
185 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAAGACATGCGGGTGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCAGATCCCCCCTGCGTGCTGTCGATCC
TACTACCGTAACCTCTGATCCGATCCGATCTTAGACAGGGAATGAACTTCGTAT
Found at i:30582134 original size:158 final size:158
Alignment explanation
Indices: 30581877--30582379 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 158
30581867 AACTTCGTAT
* ** *
30581877 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
30581942 CCGACTGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCTTGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCAGATCCCCCCTGCGTGCTGTCGATCC
*** *
30582007 TACTGTGTCAACCCTCTATCCGGTCT-GA
131 TACTGCCACAACCCTCGATCCGG-CTGGA
* ** * * * *
30582035 TCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
30582100 CCGGCCGGAGAGGCATAATGAGCAAACCGAGGATCGGCCAGGTCCCCCTCTGTGTGCTGTCGGTC
66 CCGGCCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCAGATCCCCC-CTGCGTGCTGTCGATC
* * *
30582165 CTACTGCCACAACCCTCGGTCTGGCTGGG
130 CTACTGCCACAACCCTCGATCCGGCTGGA
* * * *
30582194 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGCGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * **
30582258 GCTGGCC-GACGAGGCAGAATGATCAAGCC-AGGGATCGACCCGATCCCCTTTGCGTGCTGTCGA
65 GCCGGCCGGA-GAGGCAGAATGAGCAAGCCGA-GGATCGGCCAGATCCCCCCTGCGTGCTGTCGA
* * * * * *
30582321 TCCTGCTGCCGCAAACCTC-AGTCCAGTTTGA
128 TCCTACTGCCACAACCCTCGA-TCCGGCTGGA
** *
30582352 TATTAGACTAGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
30582380 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 65, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 151 0.55
159 120 0.44
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCAGATCCCCCCTGCGTGCTGTCGATCC
TACTGCCACAACCCTCGATCCGGCTGGA
Found at i:30582394 original size:26 final size:26
Alignment explanation
Indices: 30582354--30582405 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30582344 CAGTTTGATA
30582354 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
30582380 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
30582406 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:30582443 original size:501 final size:494
Alignment explanation
Indices: 30580842--30582443 Score: 1740
Period size: 501 Copynumber: 3.2 Consensus size: 494
30580832 GTGGCTCAAA
* *
30580842 ATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAA
* * *
30580906 CCCACGAAAGGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAG-TCGGGGAT-G
65 CCCACGAAATGAGCGTGCGGGCGCTCAGCC-GCTGGAGAGGTAGAATGCGCAAGCT-GGGGATCG
* * * ** * ** *
30580969 GCCCGGTCCCCCCTACGTGCTGTCGATCCTTCCACCACAACCCTCGGTCTAATCCGATCTTAGAC
128 G-CCGATCCCCCCTACGTGCTGTCGATCCTACTACGTCAACCCTC-ATCTGGTCTGATCTTAGAC
** * * * * * * *
30581034 TGGGAATGAACTCCATATGCATAAGTCAACCCAAGAAACAAGCATGCGGGCGTTGAGCCAGCCGA
191 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGG
* * * * *
30581099 AGAGGCATAATGTGCAAGCCAGGGATCGACCCGGTCCCCTCTGCGTGTTGCCGTCCCACTGCCAC
256 AGAGGCATAATGAGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTGCGGTCCTACTGCCAC
* *
30581164 AA-CCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCACAAAA
321 AACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * *
30581228 CGAGCGTG-GGGTGCTCAGCCGGCCGAAGAGGCAGAAT-AGGCAAGTCGGGGATCGGCCCGGTCC
386 CGGGCGTGCGGGTGCTCAGCTGGCCG-AGAGGCAGAATGA-GCAAGCCGGGGATCGACCCGGTCC
* * *
30581291 CCCCTGCGTGCTGTCAATCCTGTTGCTGGTCTTACTACCGCAACCCTCGGTCCGGTCTA
449 CCCCTGCGTGCTGTCGATCC---TGCT-G--------CCGCAAACCTCGGTCC-GTCTG
* * * *
30581350 ACCTTAGACAGGGAATGAACTCCGTATGCTTAAACAT-GGAATGAACACCATATGCCTAAGCCAA
1 ATCTTAGACAGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * * ** *
30581414 CCTACGAAACGAGCGTGTGGGCGTTCAGCCGGTCGAAGAGGCAAAATGCACAAGCCCGAGATCGG
65 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGCT-GGAGAGGTAGAATGCGCAAGCTGGGGATCGG
* *
30581479 CCCAGT-CCCCCTACGTGCTATCGATCCTACTACCGT-AACCCTCAGTCTGGTCTGATCTTAGAC
129 CCGA-TCCCCCCTACGTGCTGTCGATCCTACTA-CGTCAACCCTCA-TCTGGTCTGATCTTAGAC
* * * * * ** *
30581542 TAGGAATGAACTCTGTATGCCTAAGTCAAACCACGAAATGAGTGTGCGGGTGCTGAGCCGATCAG
191 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGG
* * *
30581607 AGAGGCATAATGCA-CAAGCCAGGGATCAGCCCGGTACCCCTCTGCGTGCTACTGGT-CTCACTA
256 AGAGGCATAATG-AGCAAGCCAGGGATCGGCCCGGT-CCCCTCTGCGTGCTGC-GGTCCT-ACTG
30581670 CCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
317 CCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * *
30581735 GAAACGGACATGCGGGTGCTCA-ATCGACCGTAGAGGCAGAATGCGCAAGCTGGGGATCGACCAG
382 GAAACGGGCGTGCGGGTGCTCAGCT-GGCCG-AGAGGCAGAATGAGCAAGCCGGGGATCGACCCG
* * * *
30581799 GTCCCCCCTGCGTGCTGTCGATCCTGCTACCG-TAACCTTTGGTCCGATCCG
445 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAAACC-TCGGTCCG-TCTG
* *
30581850 ATCTTAGACAGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
30581915 CCACGAAATAAGCGTGCGGGTGCTCAGCCGACTGGAGAGGTAGAATGCGCAAGCTGGGGATCGGC
66 CCACGAAATGAGCGTGCGGGCGCTCAGCCG-CTGGAGAGGTAGAATGCGCAAGCTGGGGATCGGC
* * ** *
30581980 TTGATCCCCCCTGCGTGCTGTCGATCCTACTGTGTCAACCCTCTATCCGGTCTGATCTTAGACTG
130 -CGATCCCCCCTACGTGCTGTCGATCCTACTACGTCAACCCTC-ATCTGGTCTGATCTTAGACTG
* * *
30582045 GGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTGGCACTGAGCCGGCCGGAG
193 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGAG
* * *
30582110 AGGCATAATGAGCAAACC-GAGGATCGGCCAGGTCCCCCTCTGTGTGCTGTCGGTCCTACTGCCA
258 AGGCATAATGAGCAAGCCAG-GGATCGGCCCGGT-CCCCTCTGCGTGCTG-CGGTCCTACTGCCA
* * *
30582174 CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
320 CAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * *
30582239 ACGGGCGCGCGGGCGCTCAGCTGGCCGACGAGGCAGAATGATCAAGCCAGGGATCGACCCGATCC
385 ACGGGCGTGCGGGTGCTCAGCTGGCCGA-GAGGCAGAATGAGCAAGCCGGGGATCGACCCGGTCC
** * *
30582304 CCTTTGCGTGCTGTCGATCCTGCTGCCGCAAACCTCAGTCCAGTTTG
449 CCCCTGCGTGCTGTCGATCCTGCTGCCGCAAACCTCGGTCC-GTCTG
* * *
30582351 ATATTAGACTA-GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGAC-AGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
**
30582415 CCCACGAAATGAGCGTGTAGGCGCTCAGC
65 CCCACGAAATGAGCGTGCGGGCGCTCAGC
30582444 TGACCAGAGA
Statistics
Matches: 909, Mismatches: 152, Indels: 73
0.80 0.13 0.06
Matches are distributed among these distances:
499 5 0.01
500 123 0.14
501 380 0.42
502 11 0.01
507 1 0.00
508 227 0.25
509 23 0.03
510 11 0.01
511 65 0.07
512 63 0.07
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (494 bp):
ATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAATGAGCGTGCGGGCGCTCAGCCGCTGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCC
GATCCCCCCTACGTGCTGTCGATCCTACTACGTCAACCCTCATCTGGTCTGATCTTAGACTGGGA
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGG
CATAATGAGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTGCGGTCCTACTGCCACAACCC
TCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
GTGCGGGTGCTCAGCTGGCCGAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGGTCCCCCCTGC
GTGCTGTCGATCCTGCTGCCGCAAACCTCGGTCCGTCTG
Found at i:30583412 original size:26 final size:26
Alignment explanation
Indices: 30583383--30583434 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30583373 CCGATTCGAT
30583383 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30583409 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30583435 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30583771 original size:26 final size:26
Alignment explanation
Indices: 30583721--30583773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30583711 TGCTGTTGAT
**
30583721 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30583747 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30583773 C
1 C
30583774 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30584481 original size:26 final size:26
Alignment explanation
Indices: 30584443--30584495 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30584433 GGCTCAAAAT
*
30584443 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30584469 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30584495 C
1 C
30584496 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30584815 original size:26 final size:26
Alignment explanation
Indices: 30584786--30584838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30584776 CCGGTCTGAT
*
30584786 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30584812 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30584838 C
1 C
30584839 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30585520 original size:26 final size:26
Alignment explanation
Indices: 30585481--30585533 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30585471 GGCTCAATAT
*
30585481 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
30585507 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
30585533 C
1 C
30585534 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:30585860 original size:159 final size:158
Alignment explanation
Indices: 30585664--30585971 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 158
30585654 TTGGTCTGAT
** * * * * *
30585664 CTTAGACTAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTATGAGCACTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAAGGAGCGTACGAGCACTCAGC
* * * * * * *
30585729 TGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGCCGATCC
30585794 TGCTACCACAACCCTCGGTCTGGCTGGGG
130 TGCTACCACAACCCTCGGTCTGGCTGGGG
* * * * * * *
30585823 CTTAGA-TATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAAGGGGGGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAAGGAGCGTACGAGCACTCAG
* * * *
30585887 CCGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCT
65 CCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
* *
30585952 TGCTATCGCAACCCTCGGTC
130 TGCTACCACAACCCTCGGTC
30585972 CAATTCGATC
Statistics
Matches: 121, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
158 35 0.29
159 86 0.71
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAAGGAGCGTACGAGCACTCAGC
CGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCT
GCTACCACAACCCTCGGTCTGGCTGGGG
Found at i:30586032 original size:26 final size:26
Alignment explanation
Indices: 30585981--30586033 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30585971 CCAATTCGAT
**
30585981 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30586007 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
30586033 C
1 C
30586034 CTAAGCCTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30586469 original size:184 final size:182
Alignment explanation
Indices: 30586114--30586638 Score: 558
Period size: 184 Copynumber: 2.9 Consensus size: 182
30586104 TAGACATGGA
* * ** * *
30586114 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGGGCTCAGCCAGCCG-GAGGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACC-GACGAGA-GG
* * * * * * *
30586178 CAGAATGCGCAAG-CTGGGGATTGGCC-CGTCCCCCCTGCATGCTGCCAATCCTGCTACCGCAAC
64 CAGAATGCGCAAGTC-GGGGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACAAC
* * * *
30586241 CCTCGGA-CCGGTCCAATCTTAGATTGGGAATGAACTCTATATGCTCAGACT-GGG
128 CCTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
**
30586295 ATTGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGATCGATGAG
1 A-TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGA-CGA-GAG
* * *
30586360 GCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCACTACGTGCTACCGATCCTACTACCACAAC
63 GCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACAAC
*
30586425 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
128 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
* * * * * * *
30586480 ATGAATTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGAGGACACTCAACTGACCAGGGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGA-C-GAGAGG
* * * * * * *
30586545 CAGGATGCGTAATTCAGGGA-CTAGCCTGGTCCCCCCTACGTGCTGTCGATCCTGCTACCCCAAC
64 CAGAATGCGCAAGTCGGGGATCGA-CCTGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACAAC
* * *
30586609 CCTCGGTCTGATCTGATCTTAGACTGGGAA
128 CCTCGATCCGATCCGATCTTAGACTGGGAA
30586639 ACGAGTGTTC
Statistics
Matches: 288, Mismatches: 46, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
181 2 0.01
182 48 0.17
183 28 0.10
184 205 0.71
185 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (182 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACGAGAGGCA
GAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACAACCCT
CGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
Found at i:30586478 original size:26 final size:26
Alignment explanation
Indices: 30586442--30586494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30586432 CCGATCCGAT
30586442 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
30586468 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30586494 C
1 C
30586495 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30586963 original size:26 final size:26
Alignment explanation
Indices: 30586912--30586964 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30586902 CCGGTCTGAT
**
30586912 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30586938 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30586964 C
1 C
30586965 CTAAGCCTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30587071 original size:279 final size:277
Alignment explanation
Indices: 30586721--30587248 Score: 745
Period size: 279 Copynumber: 1.9 Consensus size: 277
30586711 CGTGCTATCA
* * *
30586721 GTCCCGCTGCGACAACCCTCAGTCCAGGTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * *
30586786 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCAGTCGAAGAGGCAGAATGTGCAAGCTGAGGA
66 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGAAG-GGCAGAATGCGCAAGCTGAGGA
* * * * * * **
30586851 CCGACTCGATCCCCCCTGCGTGATGTCGATCCTACTATCGCAACCCTCAGTCCGGTCTGATCTTA
130 CCGACCCG-TCCCCCCTGCATGATGCCAATCCTACTACCGCAACCCTCAGACCGGTCCAATCTTA
* *
30586916 GACTGGGAATGAACTCTGTATGCTTAGACTGGGGA-TGAACTCCATATGCCTAAGCCTCGAAATG
194 GACTGGGAATGAACTCTATATGCTCAGACT-GGGATTGAACTCCATATGCCTAAGCCTCGAAATG
30586980 GATCCGATTCAGAAAAAAGG
258 GATCCGATTCAGAAAAAAGG
*
30587000 GTCCCGCTGCCATAACCCTC-GATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GTCCCGCTGCCACAACCCTCAG-TCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * *
30587064 GCCAACCCATGAAACGGGCGTGCGGGGGCTCAGCCAGCCGGAGGGCAGAATGCGCAAGCTGGGGA
65 GCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGAAGGGCAGAATGCGCAAGCTGAGGA
** * * * *
30587129 TTGGCCCGTCCCCCCTGCATGCTGCCAATCCTGCTACCGCAACCCTCGGACCGGTCCAATCTTAG
130 CCGACCCGTCCCCCCTGCATGATGCCAATCCTACTACCGCAACCCTCAGACCGGTCCAATCTTAG
* *
30587194 ATTGGGAATGAACTCTATATGCTCAGACTGGGATTGAACTCCGTATGCCTAAGCC
195 ACTGGGAATGAACTCTATATGCTCAGACTGGGATTGAACTCCATATGCCTAAGCC
30587249 AACCCACAAA
Statistics
Matches: 218, Mismatches: 29, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
276 4 0.02
277 93 0.43
278 25 0.11
279 96 0.44
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (277 bp):
GTCCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGAAGGGCAGAATGCGCAAGCTGAGGAC
CGACCCGTCCCCCCTGCATGATGCCAATCCTACTACCGCAACCCTCAGACCGGTCCAATCTTAGA
CTGGGAATGAACTCTATATGCTCAGACTGGGATTGAACTCCATATGCCTAAGCCTCGAAATGGAT
CCGATTCAGAAAAAAGG
Found at i:30587400 original size:184 final size:182
Alignment explanation
Indices: 30587045--30587568 Score: 558
Period size: 184 Copynumber: 2.9 Consensus size: 182
30587035 TAGACATGGA
* * ** * *
30587045 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGGGCTCAGCCAGCCG-GAGGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACC-GACGAGA-GG
* * * * * * *
30587109 CAGAATGCGCAAG-CTGGGGATTGGCC-CGTCCCCCCTGCATGCTGCCAATCCTGCTACCGCAAC
64 CAGAATGCGCAAGTC-GGGGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACAAC
* * * *
30587172 CCTCGGA-CCGGTCCAATCTTAGATTGGGAATGAACTCTATATGCTCAGACT-GGG
128 CCTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
**
30587226 ATTGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGATCGATGAG
1 A-TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGA-CGA-GAG
* * *
30587291 GCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCACTACGTGCTACCGATCCTACTACCACAAC
63 GCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACAAC
*
30587356 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
128 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
* * * * * * *
30587411 ATGAATTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGAGGACACTCAACTGACCAGGGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGA-C-GAGAGG
* * * * * *
30587476 CAG-ATGCGTAATTCAGGGA-CTAGCCTGGTCCCCCCTACGTGCTGTCGATCCTGCTACCCCAAC
64 CAGAATGCGCAAGTCGGGGATCGA-CCTGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACAAC
* * *
30587539 CCTCGGTCTGATCTGATCTTAGACTGGGAA
128 CCTCGATCCGATCCGATCTTAGACTGGGAA
30587569 ACGAGTGTTC
Statistics
Matches: 288, Mismatches: 45, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
181 2 0.01
182 50 0.17
183 101 0.35
184 130 0.45
185 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (182 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACGAGAGGCA
GAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACAACCCT
CGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
Found at i:30587409 original size:26 final size:26
Alignment explanation
Indices: 30587373--30587425 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30587363 CCGATCCGAT
30587373 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
30587399 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30587425 C
1 C
30587426 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30587678 original size:26 final size:26
Alignment explanation
Indices: 30587640--30587692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30587630 GGCTCAAAAT
*
30587640 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30587666 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30587692 C
1 C
30587693 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30588032 original size:25 final size:26
Alignment explanation
Indices: 30587983--30588034 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
30587973 CCGGTCTGAT
*
30587983 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30588009 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30588034 C
1 C
30588035 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30588717 original size:26 final size:26
Alignment explanation
Indices: 30588678--30588730 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30588668 GGCTCAATAT
*
30588678 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
30588704 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
30588730 C
1 C
30588731 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:30589057 original size:159 final size:158
Alignment explanation
Indices: 30588861--30589168 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 158
30588851 TTGGTCTGAT
** * * *
30588861 CTTAGACTAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTACGAGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAAGGAGCGTACGAGCGCTCAGC
* * * * * * *
30588926 TGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCT-TGCGTGCTGCCGATCC
30588991 TGCTACCACAACCCTCGGTCTAGCTGGGG
130 TGCTACCACAACCCTCGGTCTAGCTGGGG
* * * * * *
30589020 CTTAGA-TATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAAGGGGGGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAAGGAGCGTACGAGCGCTCAG
* * * * *
30589084 CCGATCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTTGCGTGCTGCCGATCT
65 CCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTTGCGTGCTGCCGATCC
* *
30589149 TGCTATCGCAACCCTCGGTC
130 TGCTACCACAACCCTCGGTC
30589169 CAATTCGATC
Statistics
Matches: 123, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 34 0.28
159 89 0.72
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAAGGAGCGTACGAGCGCTCAGC
CGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTTGCGTGCTGCCGATCCT
GCTACCACAACCCTCGGTCTAGCTGGGG
Found at i:30589230 original size:27 final size:26
Alignment explanation
Indices: 30589178--30589231 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
30589168 CCAATTCGAT
**
30589178 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30589204 CTTAGACTTGGGGATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30589231 C
1 C
30589232 CTAAGCCTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30589504 original size:26 final size:26
Alignment explanation
Indices: 30589456--30589505 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
30589446 GTCCGATCTT
*
30589456 AGACTGGGAATGAACTCTATATGCTC
1 AGACTGGGAATGAACTCCATATGCTC
** *
30589482 AGACTGGGGTTGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
30589506 CTAAGCCAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTC
Found at i:30590145 original size:26 final size:26
Alignment explanation
Indices: 30590116--30590166 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30590106 CGATCTGATC
*
30590116 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
* *
30590142 TTAGACTGGGGATGAGCTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
30590167 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:30590502 original size:26 final size:26
Alignment explanation
Indices: 30590473--30590525 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30590463 CCAATCCGAT
*
30590473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
30590499 CTTAGAGTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30590525 C
1 C
30590526 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30591099 original size:157 final size:154
Alignment explanation
Indices: 30590708--30591151 Score: 419
Period size: 157 Copynumber: 2.8 Consensus size: 154
30590698 AACTCCATAT
*
30590708 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGAGCGCTCAG
* * * * * * * * *
30590773 CTGGCTGGAGAGGTAGAATGCGCAAGTCGGGGACCAGCCTGGTCCCCCCTACGTGCTGTCGATCC
66 CAGGC-GAAGAGGCAAAATGCGCAAG-CCGGGATCAGTC-GGTCCCCTCTACATGCTGTCGATCC
* **
30590838 TGCTACGTAACCCTCAGTCCAGTCTGA
128 CGCTACACAACCCTCAGTCCAGTCTGA
* * * * * *
30590865 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTTCGATCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGAGCGCTCA
* * * *
30590929 GCAGGCCAGAGAGGCATAATGCGCAAGCCGGGATCAGTTCGGTCCCCTCTGCATGCTGTCGGTCC
65 GCAGGCGA-AGAGGCAAAATGCGCAAGCCGGGATCAG-TCGGTCCCCTCTACATGCTGTCGATCC
* *
30590994 CGCTGCCACAACCCTC-GATCCAG-CTGGG
128 CGCT-ACACAACCCTCAG-TCCAGTCT-GA
* * * *
30591022 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGA-GCGCTCA
* * * * * * *
30591086 GCCGATCGAAGAGGCAAAATGCACAAGCCGGGGATCGGGTCGATCCCCTCTACGTGCTATCGATC
65 GCAG-GCGAAGAGGCAAAATGCGCAAGCC-GGGATC-AGTCGGTCCCCTCTACATGCTGTCGATC
30591151 C
127 C
30591152 TACTGTTGCA
Statistics
Matches: 231, Mismatches: 45, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
156 37 0.16
157 162 0.70
158 31 0.13
159 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGAGCGCTCAG
CAGGCGAAGAGGCAAAATGCGCAAGCCGGGATCAGTCGGTCCCCTCTACATGCTGTCGATCCCGC
TACACAACCCTCAGTCCAGTCTGA
Found at i:30591210 original size:26 final size:26
Alignment explanation
Indices: 30591181--30591233 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30591171 CCGATCCAAT
*
30591181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
**
30591207 CTTAGACTGGGGGTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30591233 C
1 C
30591234 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30591627 original size:172 final size:180
Alignment explanation
Indices: 30591390--30591745 Score: 442
Period size: 172 Copynumber: 2.0 Consensus size: 180
30591380 ACCGATTGGG
* *
30591390 GCTTAGACAAGGAATGAACTCAGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
** * *
30591455 -CTGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGATCCCC-C-C-TGC-GT-G-CTA
66 CCT-ACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCACGTGCTGTCGACTA
*
30591513 C-T-GCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
130 CATCGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
* * * * * * *
30591562 GCTTAGACATGGAATGAACTCCGTATGCGTAAGCTAACCCACGAAACGAGCGTGTGGGGGCTCAG
1 GCTTAGACAAGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* *
30591627 CCTACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCTCTACGTGCTGTCGATCC
66 CCTACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTC-ACGTGCTGTCGA--C
* *
30591692 TGCTATCGCAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAT
128 TAC-ATCGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
30591746 ACCTAAGTCA
Statistics
Matches: 153, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
172 94 0.61
173 3 0.02
175 1 0.01
176 3 0.02
177 2 0.01
178 1 0.01
181 3 0.02
183 1 0.01
184 45 0.29
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (180 bp):
GCTTAGACAAGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCTACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCACGTGCTGTCGACTAC
ATCGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
Found at i:30591910 original size:159 final size:157
Alignment explanation
Indices: 30591562--30592064 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 157
30591552 AACTCCGTAT
* * * * * *
30591562 GCTTAGACATGGAATGAACTCCGTATGCGTAAGCTAACCCACGAAACGAGCGTGTGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAATGAGCATGTAGGCGCTCAG
* * *
30591627 CCTACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCTCTACGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTACGTGCTGACGATCC
* * *
30591692 TGCTATCGCAACCCTCAGTCCGGTCTGA
130 TGCTACCACAACCCTCAGTCCAGTCTGA
* * * *
30591720 TCTTAGA-TTGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAATGAGCATGTAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAATGAGCATGTAGGCGCTCA
* * * * *
30591784 GCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCTTTCTACGTGCT-ACAGG
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC-CTCTACGTGCTGAC-GA
* *
30591848 TCCTGCTGCCACAACCCTCAGTCCAG-CTAGG
127 TCCTGCTACCACAACCCTCAGTCCAGTCT-GA
* *
30591879 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAATGGGC--GTACGGGTGCT
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAG-CAACCCATGAAATGAGCATGTA--GGCGCT
* * * * * * * * * *
30591941 CAGCAGGCCAGAGAGGTAGAATGCGCTAGTCGGGGATCGACCTGGTCCCCTCTGCATGCTGCCGA
62 CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTACGTGCTGACGA
* * * *
30592006 TCCTACTGCCGCAACCCTCGGTCC-GATCTGA
127 TCCTGCTACCACAACCCTCAGTCCAG-TCTGA
* *
30592037 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
30592065 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
157 7 0.02
158 149 0.53
159 123 0.44
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAATGAGCATGTAGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTACGTGCTGACGATCCT
GCTACCACAACCCTCAGTCCAGTCTGA
Found at i:30592800 original size:26 final size:25
Alignment explanation
Indices: 30592760--30592811 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
30592750 GGCTCAAAAT
*
30592760 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACAGGAATGAACTCCGTATG
*
30592785 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGAC-AGGAATGAACTCCGTATG
30592811 C
1 C
30592812 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACAGGAATGAACTCCGTATG
Found at i:30593143 original size:26 final size:26
Alignment explanation
Indices: 30593103--30593180 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
30593093 TGGTCTGATG
* *
30593103 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
30593129 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
*
30593155 TTAGACTAGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
30593181 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTCCGTATGC
Found at i:30593666 original size:159 final size:157
Alignment explanation
Indices: 30593362--30593864 Score: 386
Period size: 159 Copynumber: 3.2 Consensus size: 157
30593352 ACTCCGTATG
* * * ** * * * *
30593362 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACTCATGAAACGAACGTGTGGTCGCTTAG
1 CTTAGAC-TGGGAATGAA-TTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAG
* * * * * * * * * *
30593426 CCGATCGGAGAGGTATAATGCACAAGTCGGGGACCGACCCGATCCCCCCTTGCGTGCTA-TCGAT
64 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCAC-TACGTGCTACT-GAT
***
30593490 CCTGTTGCCACAACCCTCGGTCCAGTCCGAT
127 CCCACTGCCACAACCCTCGGTCCAGTCCGAT
* * * *
30593521 CTTAGACTGGGAATGAATTCTGTATGCCTACGTCAACCCACAAAATGAGCGT-TCGGGCGTTGAG
1 CTTAGACTGGGAATGAATTC-GTATGCCTAAGCCAACCCACAAAATGAGCGTGT-GGGCGCTCAG
* * * ** * *
30593585 CCGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCACCTTTACGTGCT-GTCGGT
64 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCC-CCACTACGTGCTACT-GAT
* * * ** **
30593649 CCCACTGCCACAACCCTCAGTTCGGTTGGGG
127 CCCACTGCCACAACCCTCGGTCCAGTCCGAT
* * * * *
30593680 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAGATGGGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAA-TTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAG
* * * *
30593744 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCACTATGTGCTACTGATCC
64 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCACTACGTGCTACTGATCC
** * * *
30593809 TGCTGTCACAACCCTCGATCCTGTCCGAT
129 CACTGCCACAACCCTCGGTCCAGTCCGAT
30593838 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAA-TTCGTATGC
30593865 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 68, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 58 0.22
159 201 0.76
160 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAATTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAGCC
GACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCACTACGTGCTACTGATCCCA
CTGCCACAACCCTCGGTCCAGTCCGAT
Found at i:30593887 original size:25 final size:26
Alignment explanation
Indices: 30593838--30593889 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
30593828 CCTGTCCGAT
30593838 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
30593864 CTTAGACTGGG-ATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30593889 C
1 C
30593890 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30594600 original size:26 final size:26
Alignment explanation
Indices: 30594558--30594607 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
30594548 GTCTCAAACT
*
30594558 CTTAGACTGGGAGTGAACCCCGTACG
1 CTTAGACTGGGAATGAACCCCGTACG
*
30594584 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACCCCGTA
30594608 TGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTACG
Found at i:30594777 original size:26 final size:26
Alignment explanation
Indices: 30594741--30594793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30594731 CTGGTTAGAT
30594741 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30594767 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30594793 C
1 C
30594794 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30595681 original size:183 final size:183
Alignment explanation
Indices: 30595293--30596040 Score: 641
Period size: 183 Copynumber: 4.0 Consensus size: 183
30595283 CTAGCTGGGT
* * * ** * * * * *
30595293 CTTAGACATGGAATGAACTCTCTACACCTAAGCCAACCCATGAAAC-AGGCATGTGGGTGCTCAA
1 CTTAGACAGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGTGCTCAG
** * ** * * ** * * *
30595357 CCGGTCGGAGAGGCCGAATGCGTAAGCCGAGAATCGGCCCGGTCCCCCCTACGTGCTGCTGATCC
65 CCGACCGAAGAGGTAGAATGCGTAAG-CGAGGATCAGCTTGATCCCCCCTGCGTGCTGCGGATCC
** * * * *
30595422 TACTATCGTAACCCTTC-GTCCAGTTC-AATCTTAGATTGAGAATGAACTCCGTATG
129 TACTGCCGTAACCC-TCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
30595477 CTTAGACTGGGGATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACAGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
*
30595542 CGACCGAAGAGGTAGAATGCGTAAGTCGAGGATCAGCTTGAT-CCCCCTGCGTGCTACGGATCCT
66 CGACCGAAGAGGTAGAATGCGTAAG-CGAGGATCAGCTTGATCCCCCCTGCGTGCTGCGGATCCT
* * * *
30595606 ACTGCCGCAACCTTCGGTTCGATCTGATCTTAGACTGTGAATGAACTCCGTATG
130 ACTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
*
30595660 CTTAGATC-GGGGATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGA-CAGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * *
30595724 CCAACTGAAGAGGCATAATGCGCAAGCCGGGGATCAACTCGGTCCCCCTTACATGCTGTCGATCC
65 CCGACCGAAGAGGTAGAATGCGTAAG-CGAGGATCAGCTTGATCCCCC---C-TGC-GT-G---C
** *
30595789 TGTTGCTGG-TCCTACTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGT
120 ---TGC-GGATCCTACTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGT
*
30595853 ATC
181 ATG
* * * *
30595856 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CTAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 CTTAGACAGGGGATGAACTCTGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * **
30595920 TCGACCGGAGAGGTAGAATGCGTAAGCCAGGGATC-GGTCT-ATCCCCCCCTGCGTGCTGTTGAT
65 CCGACCGAAGAGGTAGAATGCGTAAGCGA-GGATCAGCT-TGAT-CCCCCCTGCGTGCTGCGGAT
* * **
30595983 CCTGCTGCCGTAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
127 CCTACTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
30596040 C
1 C
30596041 CTAAGTCAAC
Statistics
Matches: 454, Mismatches: 86, Indels: 48
0.77 0.15 0.08
Matches are distributed among these distances:
182 5 0.01
183 150 0.33
184 139 0.31
185 1 0.00
187 2 0.00
188 3 0.01
189 2 0.00
190 2 0.00
191 2 0.00
192 3 0.01
193 2 0.00
195 5 0.01
196 136 0.30
197 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (183 bp):
CTTAGACAGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGACCGAAGAGGTAGAATGCGTAAGCGAGGATCAGCTTGATCCCCCCTGCGTGCTGCGGATCCTA
CTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:30595859 original size:26 final size:26
Alignment explanation
Indices: 30595830--30595880 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30595820 CCGATCTGAT
30595830 CTTAGAC-TGGGAATGAACTCCGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
30595856 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
30595881 GCCTAAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:30596246 original size:159 final size:159
Alignment explanation
Indices: 30595856--30596317 Score: 443
Period size: 159 Copynumber: 2.9 Consensus size: 159
30595846 ACTCCGTATC
* * *
30595856 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * ** * * * *
30595921 CGACCGGAGAGGTAGAATGCGTAAGCC-AGGGATCG-GTCTATCCCCCCCTGCGTGCTGTTGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCACCCTGCGTACTGTCGATC
* ** *
30595984 CTGCTGCCGTAACCCTCAGTCCGATCCAAT
130 CCGCTGCCACAACCCTCAGTCCGATCCAAG
* * * *
30596014 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCT-CGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGGCGCTCA
* ** * *
30596077 ACCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCACTTTGTGTACTGTCGGT
64 ACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCACCCTGCGTACTGTCGAT
* * ***
30596142 CCCGTTGCCACAACCCTCGGTCCGA-CTGGGG
129 CCCGCTGCCACAACCCTCAGTCCGATC-CAAG
* * * *
30596173 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * * *
30596238 CGATCGGAGAGGCAGAATGCACAAGTCGGGGATC-ATCCCGATCCC-CCTTACGTGCTATCGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCACCCTGCGTACTGTCGATC
* *
30596301 CTGCTGTCACAACCCTC
130 CCGCTGCCACAACCCTC
30596318 GTTTCAGTCT
Statistics
Matches: 245, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 113 0.46
159 130 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCACCCTGCGTACTGTCGATCC
CGCTGCCACAACCCTCAGTCCGATCCAAG
Found at i:30596292 original size:880 final size:887
Alignment explanation
Indices: 30594557--30596405 Score: 2169
Period size: 880 Copynumber: 2.1 Consensus size: 887
30594547 TGTCTCAAAC
* * * * *
30594557 TCTTAGACTGGGAGTGAACCCCGTACGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
* * *
30594621 CCACGAAACGAGCATGCAGGTGCTCAGGCGGCCAGAGAGGTAGATGCGTAAGTCAGGGATCTGCC
65 CCACGAAACGAGCATGCAGGTGCTCAGCCGACCAGAGAGGTAGATGCGTAAGTCAGGGATCAGCC
* *
30594686 CGATCCCCCCTACGTGCTACTGATCCTACTACCGCAACCCTCAGTCTGGTTAGATCTTAGACTGG
130 CGATCCCCCCTACGTGCTACGGATCCTACTACCGCAACCCTCAGTCTGATTAGATCTTAGACTGG
* * *
30594751 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTTAACCCACAGAATGAG
195 GAATGAACTCCGTATGCTTAGACTGGGGATAAACTTCGTATGCCTAAGTCAACCCACAGAACGAG
* * ***
30594816 TGTACGGGCGCTCAGCTAGCCAGAGAGGTTGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTGG
260 CGTACGGGCGCT-A-CTAGCCA-AGA-GCTG--CAGAGAGGCAGAATGCGCAAGCCAGGGATCAA
* * * * * *
30594881 CCCGGTCCCCCTACGTGCTATCGATCCTGCTGCTAGTGCTGCTACCGTAAACCTAGGTCTGGTCT
319 CCCGGTCCCCCTACATGCTATCGATCCTGCTGCTAGTCCTACTACCGTAAACCTAGATCCGATCT
* * *
30594946 GATCTTATACTGGGATTGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
384 GATCTTAGACTGGGAATGAACTCCGTATCCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
* * * * *** *
30595011 CCCACGAAACGACTGTTCGGGCCCTTAGTCAGTCGAAGAGGCAGAATCCGCAAGTTGGGGGCCGA
449 CCCACGAAACGACTGTGCGGGCCCTCAATCAGCCGAAGAGGCAGAATCCGCAAGCCAGGGACCGA
* * * * * **
30595076 CCCAATCCCTCCTTGCGTGCTGTCGATCCTACTACCACAACCCTCGGTCTGGTCTGATCTTAGAC
514 CCCAATCCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCAGTCCGATCCAATCTTAGAC
* * *
30595141 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGCTGACCGG
579 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCTCGGGCACTGAACCGACCGG
* * * * * * * *
30595206 AGAGGCATAATGTGTAGGCCGGGGATCGACCCGATCCCCCTCTATGTGCTGCCTATCTCGCTGCC
644 AGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCACTCTATGTACTGCCGATCCCGCTGCC
* * * *
30595271 ACAACCATCGGTCTAGCTGGGTCTTAGACATGGAATGAACTCTCTACACCTAAGCCAACCCATGA
709 ACAACCATCGGTCGAGCTGGGGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCACGA
* * * ** * *
30595336 AACAGGCATGTGGGTGCTCAACCGGTCGGAGAGGCCGAATGCGTAAGCCGAGAATCGGCCCGGTC
774 AACAGGCATGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGAATCAGCCCGATC
* **
30595401 CCCCCTACGTGCT-GCTGATCCTACTATCGTAACCCTTCG-TCCAGT-TCAA
839 CCCCCTACGTGCTATC-GATCCTACTATCACAACCC-TCGTTCCAGTCT-AA
* * * *
30595450 TCTTAGATTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCAAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
*
30595515 CACGAAACGAGCGTGCAGGTGCTCAGCCGACC-GAAGAGGTAGAATGCGTAAGTC-GAGGATCAG
66 CACGAAACGAGCATGCAGGTGCTCAGCCGACCAG-AGAGGTAG-ATGCGTAAGTCAG-GGATCAG
** * * * *
30595578 CTTGAT-CCCCCTGCGTGCTACGGATCCTACTGCCGCAACCTTCGGT-TCGATCT-GATCTTAGA
128 CCCGATCCCCCCTACGTGCTACGGATCCTACTACCGCAACCCTCAGTCT-GAT-TAGATCTTAGA
*
30595640 CTGTGAATGAACTCCGTATGCTTAGA-TCGGGGATAAAC-TCTGTATGCCTAAGTCAACCCAC-G
191 CTGGGAATGAACTCCGTATGCTTAGACT-GGGGATAAACTTC-GTATGCCTAAGTCAACCCACAG
* * * *
30595702 AAACGAGCGTGCGGGTGCT-C-AGCC-A-A-CTG-A-AGAGGCATAATGCGCAAGCCGGGGATCA
254 -AACGAGCGTACGGGCGCTACTAGCCAAGAGCTGCAGAGAGGCAGAATGCGCAAGCCAGGGATCA
* * * * * * *
30595760 ACTCGGTCCCCCTTACATGCTGTCGATCCTGTTGCTGGTCCTACTATCGTAACCCTCGATCCGAT
318 ACCCGGTCCCCC-TACATGCTATCGATCCTGCTGCTAGTCCTACTACCGTAAACCTAGATCCGAT
* *
30595825 CTGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACATGGAATGAACTCCGTATGCCTAAGCT
382 CTGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACATGGAATGAACTCCATATGCCTAAGCC
** * * * *
30595890 AACCCACGAAACGAGC-GTGCGGGTGCTCAATC-GACCGGAGAGGTAGAATGCGTAAGCCAGGGA
447 AACCCACGAAACGA-CTGTGCGGGCCCTCAATCAG-CCGAAGAGGCAGAATCCGCAAGCCAGGGA
* ** * * * * **
30595953 TCG-GTCTATCCCCCCCTGCGTGCTGTTGATCCTGCTGCCGTAACCCTCAGTCCGATCCAATCTT
510 CCGACCCAATCCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCAGTCCGATCCAATCTT
30596017 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCTCGGGCACTGAACCGA
575 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCTCGGGCACTGAACCGA
* * * * *
30596082 CCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCACTTTGTGTACTGTCGGTCCCGT
640 CCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCACTCTATGTACTGCCGATCCCGC
* **
30596147 TGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
705 TGCCACAACCATCGGT-CGAGCTGGGGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACC
* * * * * * *
30596211 CACGAAACGGGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCATCC
769 CACGAAACAGGCATGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGAATCAGCC
* * * * *
30596276 CGATCCCCCTTACGTGCTATCGATCCTGCTGTCACAACCCTCGTTTCAGTCTGA
834 CGATCCCCCCTACGTGCTATCGATCCTACTATCACAACCCTCGTTCCAGTCTAA
* * *
30596330 TCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGAGATAAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
30596395 CACGAAACGAG
66 CACGAAACGAG
30596406 TGTGTAGGCA
Statistics
Matches: 806, Mismatches: 134, Indels: 45
0.82 0.14 0.05
Matches are distributed among these distances:
879 3 0.00
880 407 0.50
881 152 0.19
882 1 0.00
884 2 0.00
886 1 0.00
887 1 0.00
889 4 0.00
890 1 0.00
892 7 0.01
893 205 0.25
894 22 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (887 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCATGCAGGTGCTCAGCCGACCAGAGAGGTAGATGCGTAAGTCAGGGATCAGCCC
GATCCCCCCTACGTGCTACGGATCCTACTACCGCAACCCTCAGTCTGATTAGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATAAACTTCGTATGCCTAAGTCAACCCACAGAACGAGC
GTACGGGCGCTACTAGCCAAGAGCTGCAGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTC
CCCCTACATGCTATCGATCCTGCTGCTAGTCCTACTACCGTAAACCTAGATCCGATCTGATCTTA
GACTGGGAATGAACTCCGTATCCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGA
AACGACTGTGCGGGCCCTCAATCAGCCGAAGAGGCAGAATCCGCAAGCCAGGGACCGACCCAATC
CCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCTCGGGCACTGAACCGACCGGAGAGGCA
TAATGCGCAAGCCGAGGATCGACCCGATCCCACTCTATGTACTGCCGATCCCGCTGCCACAACCA
TCGGTCGAGCTGGGGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCACGAAACAGGC
ATGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGAATCAGCCCGATCCCCCCTA
CGTGCTATCGATCCTACTATCACAACCCTCGTTCCAGTCTAA
Found at i:30596375 original size:26 final size:26
Alignment explanation
Indices: 30596331--30596383 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30596321 TCAGTCTGAT
* *
30596331 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30596357 CTTAGACT-GGAGATAAACTCCGTATG
1 CTTAGACTGGGA-ATAAACTCCGTATG
30596383 C
1 C
30596384 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30596788 original size:26 final size:26
Alignment explanation
Indices: 30596750--30596802 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30596740 GGCTCAAACT
30596750 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30596776 CTTAGACAT-GGAATGCACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30596802 C
1 C
30596803 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30597320 original size:26 final size:25
Alignment explanation
Indices: 30597281--30597330 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
30597271 CCGGTCTGAT
*
30597281 CTTAGACTGGAATGAACTTCGTATA
1 CTTAGACTGGAATGAACTCCGTATA
30597306 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGAC-TGGAATGAACTCCGTAT
30597331 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATA
Found at i:30598029 original size:26 final size:26
Alignment explanation
Indices: 30598000--30598052 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30597990 CTGGTCCGAT
30598000 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
30598026 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30598052 C
1 C
30598053 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30598545 original size:26 final size:26
Alignment explanation
Indices: 30598501--30598550 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
30598491 TTGGTCTGAT
* *
30598501 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
30598527 CTTAGACTGGGGATAAACTTTGTA
1 CTTAGACTGGGAATAAACTCTGTA
30598551 CGCCTAAGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:30601897 original size:159 final size:157
Alignment explanation
Indices: 30601604--30602098 Score: 381
Period size: 159 Copynumber: 3.1 Consensus size: 157
30601594 TGCTTTGACA
* * * * * * * * * *
30601604 TGGAATGAACTTCGTATGCCTAAGCTAACCCACGAAAC-GAGCGTACGGGCGCTCAACCGGTCGG
1 TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAG-GTGTGCGGACACTCAGCCGGTTGA
* ** * * * * * * ** * * *
30601668 AGAGGTAGAATGCGCAAGTTGGGGATTGACCCGGTCCCCCCTTACGTGCTGTCGATCCTGCTGTC
65 AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGT-CCCACTTGCGTGCTACCGATCCCGCGGCC
* *
30601733 GTAACCCACGGTCCGATCCGATCTTAGAC
129 ATAACCCTCGGTCCGATCCGATCTTAGAC
* * *
30601762 TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTG-GG-CATTGAGCCGGTT
1 T-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAAC-AG-GTGTGCGGACACTCAGCCGGTT
* * * * * * *
30601825 GAAGAGGCATAATGCGTAAGCCGAGGATTGGCCC-GATCCCCCTCTGCGTGTTACCGGTCCCGCT
63 GAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAG-TCCCACT-TGCGTGCTACCGATCCCGCG
* * **
30601889 GCCATAACCCTCGATCCGA-CTGGGGCTTAGAC
126 GCCATAACCCTCGGTCCGATC-CGATCTTAGAC
* * * *
30601921 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGACGCTCAGTCGGTTGA
1 -TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAGGTGTGCGGACACTCAGCCGGTTGA
* * ** * * *
30601986 AGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAGTCCCACTTGCGTGCTGTCGATCCTGCGGTCG
65 AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCACTTGCGTGCTACCGATCCCGCGGCCA
*
30602051 CAACCCTCGGTCC-AGTCCGATCTTAGAC
130 TAACCCTCGGTCCGA-TCCGATCTTAGAC
30602079 TAGGAATGAACTCCGTATGC
1 T-GGAATGAACTCCGTATGC
30602099 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 60, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 65 0.25
159 184 0.70
160 4 0.02
161 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAGGTGTGCGGACACTCAGCCGGTTGAA
GAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCACTTGCGTGCTACCGATCCCGCGGCCAT
AACCCTCGGTCCGATCCGATCTTAGAC
Found at i:30602390 original size:352 final size:352
Alignment explanation
Indices: 30601849--30602517 Score: 871
Period size: 352 Copynumber: 1.9 Consensus size: 352
30601839 CGTAAGCCGA
* * * *
30601849 GGATTGGCCCGATCCCCCTCTGCGTGTTACCGGTCCCGCTGCCATAACCCTCGATCCGACTGGGG
1 GGATTAGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCCGACTGGGG
* * * * **
30601914 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGACGCTCAGT
66 ATTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCGTGCGGACACTCAAC
* * * * * * *
30601979 CGGTTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAGTCCCACTTGCGTGCTGTCGATCCT
131 CGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCACCTACGTGCTGTCGATCCT
*
30602044 GCGGTCGCAACCCTCGGTCCAG-TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TG
196 GCGGTCGCAACCCTC-GTCCAGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACAT-
* * * * *
30602107 GGGATGAACTCCATTTGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGATTGGAT
259 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCACTCAACCGATTGGAT
30602172 AGGCTGATTGGAGAGGCATAATGCGCAAG
324 AGGCTGATTGGAGAGGCATAATGCGCAAG
* * * * * *
30602201 GGATTAGCCCGATCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGCTGGGG
1 GGATTAGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCCGACTGGGG
* *
30602266 ATTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAAC-GAGCGTGC-GAGCACTCA
66 ATTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAG-GCGTGCGGA-CACTCA
* * * *
30602329 ACCGATCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACTC-GATCCCCCCTACGTGCTGTCGAT
129 ACCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAG-TCCCACCTACGTGCTGTCGAT
* * * *
30602393 CCTGCTGTCGCAACCCTCGTCCTGATTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACA
193 CCTGCGGTCGCAACCCTCGTCCAGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACA
* * * *
30602458 TGGAATGAACTCCGTATGCCTCAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAACCGA
258 TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCACTCAACCGA
30602518 CCGGAAAGGC
Statistics
Matches: 269, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
351 9 0.03
352 259 0.96
353 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (352 bp):
GGATTAGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCCGACTGGGG
ATTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCGTGCGGACACTCAAC
CGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCACCTACGTGCTGTCGATCCT
GCGGTCGCAACCCTCGTCCAGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGG
AATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCACTCAACCGATTGGATAG
GCTGATTGGAGAGGCATAATGCGCAAG
Found at i:30602462 original size:26 final size:26
Alignment explanation
Indices: 30602424--30602476 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30602414 CTGATTCGAT
30602424 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30602450 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30602476 C
1 C
30602477 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30602975 original size:25 final size:26
Alignment explanation
Indices: 30602925--30602976 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
30602915 CCGATCTGAT
*
30602925 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
30602951 CTTAGACTGGG-ATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
30602976 C
1 C
30602977 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:30603335 original size:26 final size:26
Alignment explanation
Indices: 30603303--30603355 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30603293 TCGATATGAT
30603303 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30603329 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30603355 C
1 C
30603356 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30603676 original size:26 final size:26
Alignment explanation
Indices: 30603647--30603699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30603637 CCGATCCGAT
* *
30603647 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
30603673 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
30603699 C
1 C
30603700 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:30604056 original size:26 final size:26
Alignment explanation
Indices: 30604027--30604079 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30604017 CCGATCCAGT
30604027 CTTAGA-ATGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30604053 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30604079 C
1 C
30604080 CTAAGCCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30604552 original size:157 final size:154
Alignment explanation
Indices: 30604053--30604552 Score: 425
Period size: 157 Copynumber: 3.2 Consensus size: 154
30604043 ACTCCGTATG
* * * * * *
30604053 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCTACCCACGAAATGAGTGTGTGGGAGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGTGTG-CGGCGCTCAGC
* * ** *
30604118 CGGTCGGAGAGGCAAAATGCGTAAGCTAGGGACCGACCCGGT-CCCCCTGCGCGCTATCGATCTT
64 C-GTCGGAGAGGCAAAATGCGTAAGC-AGGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCT
*
30604182 GCTGCCGCAACCCTTGGTCTGAT-CTGAT
127 GCTGCCGCAACCCTCGGTCTGATCCT-AT
* * *
30604210 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGTAACGAGTGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGTGTG-CGGCGCTCAG
* *** * * ** * ** *
30604274 CCTGTCGGATAGGTGTAATGCGTAAACTGAGGATTAGCTCGGTCCCCCTCTGCATGCTGCCGGTC
63 CC-GTCGGAGAGGCAAAATGCGTAAGCAG-GGATCGGCCCGGTCCCCC-CTGCATGCTATCGATC
* * ****
30604339 CCGCTGCCACAACCCTCGGTCTGA-CAGGGG
125 CTGCTGCCGCAACCCTCGGTCTGATC-CTAT
* * * *
30604369 CTTAAACATGGAATGAACTCCCTATGCGTAAGCAAACCCATGAAACGAGCGTGCGGCTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGTGTGCGGC-GCTCAGC
* * *
30604434 CGATCGGAGAGGCAAAATGTGCAAGCCGGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTG
64 CG-TCGGAGAGGCAAAATGCGTAAGCAGGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTG
* * *
30604499 CTGTCGCAACCCTCAGTCCGATCCTAT
128 CTGCCGCAACCCTCGGTCTGATCCTAT
*
30604526 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30604553 TTAGACTTAG
Statistics
Matches: 266, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 138 0.52
158 25 0.09
159 99 0.37
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGTGTGCGGCGCTCAGCCG
TCGGAGAGGCAAAATGCGTAAGCAGGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTG
CCGCAACCCTCGGTCTGATCCTAT
Found at i:30604569 original size:27 final size:26
Alignment explanation
Indices: 30604526--30604579 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
30604516 CCGATCCTAT
*
30604526 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
30604552 CTTAGACTTAGGAATGAACTCCGTATG
1 CTTAGAC-TAGGAATGAACTCCATATG
30604579 C
1 C
30604580 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30604878 original size:195 final size:197
Alignment explanation
Indices: 30604524--30604878 Score: 484
Period size: 195 Copynumber: 1.8 Consensus size: 197
30604514 GTCCGATCCT
* * * *
30604524 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTTAGGAATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGAGAATGAACTCCATATGCTTAGACATAGGAATGAACTCCGAATGCCTAAGCCAA
* * **
30604589 CCCATGAAACAAGCGTGCGGGCTTTCAACCGATCGGAGAGGCAAAATGCACAAGCCGGGGATCGA
66 CCCATGAAACAAGCGTGCGGGCTCTCAACCGACCAAAGAGGCAAAATGCACAAGCCGGGGATCGA
* *
30604654 CCTGATCCCCCCTGCGTGTTGTCGATCCTGTTGTTGGTCCTGCTACCACAACCCTTGGTTAGGTA
131 CCTGATCCCCCCTGCGTGCTATCGATCCTGTTGTTGGTCCTGCTACCACAACCCTTGGTTAGGTA
30604719 TG
196 TG
* *
30604721 ATCTTAGACTGAGAATGATCTCCGTATGCTTAGTA-AT-GGAATGAACTCCGAATGCCTAAGCCA
1 ATCTTAGACTGAGAATGAACTCCATATGCTTAG-ACATAGGAATGAACTCCGAATGCCTAAGCCA
* * * * * * *
30604784 ATCCATGAAACGAGCGTGCGGGC-CTCAGCTGGCCAAAGAGGCAGAATGCGCAAGCCGGGGATC-
65 ACCCATGAAACAAGCGTGCGGGCTCTCAACCGACCAAAGAGGCAAAATGCACAAGCCGGGGATCG
*
30604847 AGCCTGGTCCCCCCTGCGTGCTATCGATCCTG
130 A-CCTGATCCCCCCTGCGTGCTATCGATCCTG
30604879 CTGTCGTAAC
Statistics
Matches: 136, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
194 1 0.01
195 58 0.43
196 45 0.33
197 31 0.23
198 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (197 bp):
ATCTTAGACTGAGAATGAACTCCATATGCTTAGACATAGGAATGAACTCCGAATGCCTAAGCCAA
CCCATGAAACAAGCGTGCGGGCTCTCAACCGACCAAAGAGGCAAAATGCACAAGCCGGGGATCGA
CCTGATCCCCCCTGCGTGCTATCGATCCTGTTGTTGGTCCTGCTACCACAACCCTTGGTTAGGTA
TG
Found at i:30605018 original size:696 final size:696
Alignment explanation
Indices: 30603856--30605306 Score: 1531
Period size: 696 Copynumber: 2.1 Consensus size: 696
30603846 TCCGGCTAGG
* * * *
30603856 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGCGCGTGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGCGCGGGCGCTCAA
** * * * *
30603921 TTGGCCAGAGAGGCAAAATGCACAAGCCGTGGATCGGCCCGATCCCCCCTGCGTGCTGCCAATCT
66 CCGACCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
** * * *
30603986 TGCTGCTGGTCCTGCTGTCGCAACCCTTAGTCCGATCCAGTCTTAGAATGGGAATGAACTCCGTA
131 TGCTGCTGGTCCTGCTACCACAACCCTTAGTACGATCCAGTCTTAGAATGAGAATGAACTCCGTA
* * * * * *
30604051 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCTACCCACGAAATGAGTGTGTGGGAGCTCA
196 TGCTTAGACATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGACCTCA
* ** * * * *
30604116 ACCGGTCGGAGAGGCAAAATGCGTAAGCTAGGGACCGACCCGGTCCCCCTGCGCGCTATCGATCT
261 ACCGGCCAAAGAGGCAAAATGCGCAAGCCAGGGACAGACCCGGTCCCCCTGCGCGCTATCGATCC
** * * * *
30604181 TGCTGCCGCAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
326 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCATAAGCCAA
* * ** * ** * * * *
30604246 CCCATGTAACGAGTGTGTGGGCGCTGAGCCTGTCGGATAGGTGTAATGCGTAAACTGAGGATTAG
391 CCCACGGAACGAACGTGCGGGCGCTGAGCCAATCGAAGAGGTATAATGCGTAAACTGAGGATCAG
* * *
30604311 CTCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCGGT-CTGACAGGGGCTTAAA
456 CTCGATCCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAG-CAGGGGCTTAAA
* * ** * * *
30604375 CATGGAATGAACTCCCTATGCGTAAGCAAACCCATGAAACGAGCGTGCGGCTGCTCAGCCGATCG
520 CATGGAATGAACTACCTATGCCTAAGCAAACCCACAAAACGAGCGTGCGGCAGCTCAGCCAACCG
* * * * *
30604440 GAGAGGCAAAATGTGCAAGCCG-GGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTC
585 GAGAGACAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTATCAATACTGCTGTC
30604504 GCAACCCTCAGTCCGATCCTATCTTAGACTGGGAATGAACTCCATAT
650 GCAACCCTCAGTCCGATCCTATCTTAGACTGGGAATGAACTCCATAT
* * * **
30604551 GCTTAGACTTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCTTTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGCGCGGGCGCTCA
* * * * * *
30604616 ACCGATCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGCGTGTTGTCGATC
65 ACCGACCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATC
* * * * * * *
30604681 CTGTTGTTGGTCCTGCTACCACAACCCTTGGTTAGGTAT-GA-TCTTAGACTGAGAATGATCTCC
130 CTGCTGCTGGTCCTGCTACCACAACCCTTAG-TACG-ATCCAGTCTTAGAATGAGAATGAACTCC
* *
30604744 GTATGCTTAGTA-ATGGAATGAACTCCGAATGCCTAAGCCAATCCATGAAACGAGCGTGCGGG-C
193 GTATGCTTAG-ACATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAC
* * * * * *
30604807 CTCAGCTGGCCAAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCTGGTCCCCCCTGCGTGCTAT
257 CTCAACCGGCCAAAGAGGCAAAATGCGCAAGCCAGGGA-CAGACCCGGT-CCCCCTGCGCGCTAT
* * *
30604871 CGATCCTGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCATA
320 CGATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCATA
* * *
30604936 AGCCAACCCACGGAACGAACGTGCGGGCGTTGAGCCAATCGAAGAGGTATAATGC--ACGAGTCG
385 AGCCAACCCACGGAACGAACGTGCGGGCGCTGAGCCAATCGAAGAGGTATAATGCGTA-AACT-G
* * * * * * *
30604999 GGGATCGGAC-CGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTTAGTCCAGCTGG
448 AGGATCAG-CTCGATCCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCAGG
* * * * * *
30605063 GGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCGACAAAATGAGCGTGTGGGAGCTCA
512 GGCTTAAACATGGAATGAACTACCTATGCCTAAGCAAACCCACAAAACGAGCGTGCGGCAGCTCA
* * * * **
30605128 GTCAACCGGAGAGACAAAATGCGTAAGCCGAGGATTAGCTCGGTCCCCCCTGTGTGCTATCAATA
577 GCCAACCGGAGAGACAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTATCAATA
* * * *
30605193 CTGCTACTGGTCCTGCTACCGC-CAGCCTCGATCTGGTCTGATCTTAGTCTGGGAATGAACTCCG
642 CTG---CT-GT-C-GCAACC-CTCAGTC-CGATC----CT-ATCTTAGACTGGGAATGAACTCCA
30605257 TAT
694 TAT
* * **
30605260 GCTTAGACAAGGAATGAACTTCGTATGTGTAAG-CGAACCCACGAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAAC
30605307 GAGTGTGCGA
Statistics
Matches: 610, Mismatches: 121, Indels: 37
0.79 0.16 0.05
Matches are distributed among these distances:
694 1 0.00
695 45 0.07
696 438 0.72
697 37 0.06
698 2 0.00
700 2 0.00
701 2 0.00
702 1 0.00
703 9 0.01
704 6 0.01
707 1 0.00
708 33 0.05
709 33 0.05
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (696 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGCGCGGGCGCTCAA
CCGACCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
TGCTGCTGGTCCTGCTACCACAACCCTTAGTACGATCCAGTCTTAGAATGAGAATGAACTCCGTA
TGCTTAGACATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGACCTCA
ACCGGCCAAAGAGGCAAAATGCGCAAGCCAGGGACAGACCCGGTCCCCCTGCGCGCTATCGATCC
TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCATAAGCCAA
CCCACGGAACGAACGTGCGGGCGCTGAGCCAATCGAAGAGGTATAATGCGTAAACTGAGGATCAG
CTCGATCCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCAGGGGCTTAAAC
ATGGAATGAACTACCTATGCCTAAGCAAACCCACAAAACGAGCGTGCGGCAGCTCAGCCAACCGG
AGAGACAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCATGCTATCAATACTGCTGTCG
CAACCCTCAGTCCGATCCTATCTTAGACTGGGAATGAACTCCATAT
Found at i:30605921 original size:189 final size:185
Alignment explanation
Indices: 30605597--30605964 Score: 461
Period size: 189 Copynumber: 2.0 Consensus size: 185
30605587 GGGCCTAGAC
* *
30605597 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACTGGTGCTCAGCCGGTCAA
1 ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACTGGTGCTCAGCCGGTCAA
* ** * * **
30605662 AGAGGTAGAATGTGCAAGCCGGGGATCGGCCCGATCCCTCCATACGTGCTGTCGATCCTACTGTC
66 AGAGGCAGAATGCACAAGCCAGGGACCGGCCCGATCCCTCCATACGTGCTGTCGATCCTACTACC
* * * *
30605727 GCAACCCTCGGTCCGGTTTGATCTTAGACTGGAAATGAACTCCGTATGCTTCGAT
131 GCAACCCTCGATCCGATCTGATCTTACACTGGAAATGAACTCCGTATGCTTCGAT
* * *
30605782 ATGGAATGAACTCCATATGTCTAAGCCAACCCACGAAACGATCGTGTGTCTGGGTGCTCAGCCGG
1 ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA--GCGT-ACT-GGTGCTCAGCCGG
* **
30605847 TCGAAA-AGGCAGAATGCACAAGCCAGGGACCGGCCTGATCCTCTCC-TGTGTGCTGTCGATCCT
62 TC-AAAGAGGCAGAATGCACAAGCCAGGGACCGGCCCGATCC-CTCCATACGTGCTGTCGATCCT
* * * *
30605910 GCTACCGCAACCCTTGATCTGATCTGATCTTACACTGGTAATGAACTCCGTATGC
125 ACTACCGCAACCCTCGATCCGATCTGATCTTACACTGGAAATGAACTCCGTATGC
30605965 CTAAGTCAAC
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
185 38 0.25
187 3 0.02
188 2 0.01
189 104 0.68
190 7 0.05
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (185 bp):
ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACTGGTGCTCAGCCGGTCAA
AGAGGCAGAATGCACAAGCCAGGGACCGGCCCGATCCCTCCATACGTGCTGTCGATCCTACTACC
GCAACCCTCGATCCGATCTGATCTTACACTGGAAATGAACTCCGTATGCTTCGAT
Found at i:30606014 original size:519 final size:501
Alignment explanation
Indices: 30604719--30606281 Score: 1268
Period size: 513 Copynumber: 3.1 Consensus size: 501
30604709 TGGTTAGGTA
* * * *
30604719 TGATCTTAGACTGAGAATGATCTCCGTATGCTTAGTA-ATGGAATGAACTCCGA-ATGCCTAAGC
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-ACAAGGAATGAACTCC-ATATGTCTAAGC
* * * * * * * *
30604782 CAATCCATGAAACGAGCGTGCG-G-GCCTCAGCTGG-CCAAAGAGGCAGAATGCGCAAGCCGGGG
64 CAACCCACGAAACGAGTGTGCGAGTG-CTCAGCCGGTCGAAA-AGGCAGAATGCACAAGCCAGAG
* * * * * ** * * *
30604844 ATC-AGCCTGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGTAACCCTC-AGTCCGGTCTGATC
127 ACCGA-CCTGATCTCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGA-TCTGATCTGATC
* * * * * * **
30604907 TTAGACTGGGAATAAACTCCGTATGCATAAGCCAACCCACGGAACGAACGTGCGGGCGTTGAGCC
190 TTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCC
* * * ** * * * * * *
30604972 AATCGAAGAGGTATAATGCACGAGTCGGGGATCGGA-CCGATCCCCCTCTGCGTGCTGTCGGTC-
255 AATCGGAGAGGCACAACACACAAGCCGGGGATC-AACCCGGTCCCCCTCTACGTGCTATCGGTCG
* * * *
30605035 CTGCTGCCACAACCCT-TAGTCC-AGCTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGC
319 C-ACTGCCACAACCCTCGA-TCCGA-CTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * ** * * * *
30605098 CAACCGAC-AAA-ATGAGCGTGTGGGAGCTCAGTCAACCGGAGAGACAAAATGCGTAAGCCGAGG
381 CAACCCACGAAACA-G-GCATCTGGGTGCTCAGCCGACCAAAGAGGCAACATGCGCAAGCCGGGG
** * * * ** * * *
30605161 ATTAGCTCGGTCCCCCCTGTGTGCTATCAATACTGCTACTGGTCCTGCTACCGCCAGCCTCGATC
444 ATCGGCCCGATCCCTCCTACGTGCTACCAAT-C--CTACT-GT-C-GC-A-----ACCCTCGGTC
*
30605226 TGGTC
497 CGGTC
* * * * *
30605231 TGATCTTAGTCTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTTCGTATGTGTAAGCGA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGTCTAAGCCA
* * * ** ** *
30605296 ACCCACGAAACGAGTGTGCGAGTGCTCAGCCGGTTGAAGAGGTAGAATGTGCAAGTTAGAGATCG
66 ACCCACGAAACGAGTGTGCGAGTGCTCAGCCGGTCGAAAAGGCAGAATGCACAAGCCAGAGACCG
* * * * **
30605361 ACCTGGTCTCCCCTACGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCTGATCTGATCTTAGGC
131 ACCTGATCTCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCTGATCTTACAC
* * * * ** *
30605426 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAGGAGCGTGTGGGCACTTAGCCGGTTGG
196 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCAATCGG
* * ** * * * *
30605491 AGAGGTACAATACGTAAGTCGGGGATCAACCTGGTCCCCCTCTACGTGCTGCTGATCCTGTTGCC
261 AGAGGCACAACACACAAGCCGGGGATCAACCCGGTCCCCCTCTAC--G-TGCT-AT-CGGTCG-C
* * *
30605556 AGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCCTAGACATGGAATGAACTCCGTATGCCTAA
320 A---CTG---CCACAACCCTCGATCCGACTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAA
* * ** * *
30605621 GCCAACCCACGAAA-TGAGCGTACT-GGTGCTCAGCCGGTCAAAGAGGTAGA-ATGTGCAAGCCG
379 GCCAACCCACGAAACAG-GCAT-CTGGGTGCTCAGCCGACCAAAGAGGCA-ACATGCGCAAGCCG
** * *
30605683 GGGATCGGCCCGATCCCTCCATACGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCGGTT
441 GGGATCGGCCCGATCCCTCC-TACGTGCTACCAATCCTACTGTCGCAACCCTCGGTCCGGTC
* * * *
30605745 TGATCTTAGACTGGAAATGAACTCCGTATGCTTCGATATGGAATGAACTCCATATGTCTAAGCCA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGTCTAAGCCA
* *
30605810 ACCCACGAAACGATCGTGTGTCTGGGTGCTCAGCCGGTCGAAAAGGCAGAATGCACAAGCCAGGG
66 ACCCACGAAACGA--GTGTG-C-GAGTGCTCAGCCGGTCGAAAAGGCAGAATGCACAAGCCAGAG
* * ** *
30605875 ACCGGCCTGATCCTCTCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTTGATCTGATCTGATCT
127 ACCGACCTGAT-CTCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCTGATCT
* * *
30605940 TACACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGTACTGAGCCA
191 TACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCA
* * **
30606005 ATCGGAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTATCGGTCGCA
256 ATCGGAGAGGCACAACACACAAGCCGGGGATCAACCCGGTCCCCCTCTACGTGCTATCGGTCGCA
* * *
30606070 CTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAACC
321 CTGCCACAACCCTCGATCCGACTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * ** * *
30606135 CATGAAACAGGCATGTGGGTGCTCAGCCGACCGGAGAGGCAACATGCGTAAGCCGGGGATTGGCC
386 CACGAAACAGGCATCTGGGTGCTCAGCCGACCAAAGAGGCAACATGCGCAAGCCGGGGATCGGCC
* * * * *
30606200 TGGTCCCTCCTGCGTGCTACCAATCCTACTGTCGTAACCCTCGGTCTGGTC
451 CGATCCCTCCTACGTGCTACCAATCCTACTGTCGCAACCCTCGGTCCGGTC
* *
30606251 TGATCTTAGAATGGGAATGAACACCGTATGC
1 TGATCTTAGACTGGGAATGAACTCCGTATGC
30606282 CTAAGTCAAC
Statistics
Matches: 840, Mismatches: 176, Indels: 76
0.77 0.16 0.07
Matches are distributed among these distances:
506 64 0.08
507 111 0.13
508 1 0.00
510 3 0.00
511 1 0.00
512 71 0.08
513 167 0.20
514 88 0.10
515 3 0.00
516 13 0.02
517 3 0.00
518 44 0.05
519 140 0.17
520 3 0.00
521 1 0.00
522 5 0.01
523 5 0.01
525 102 0.12
526 15 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (501 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGTCTAAGCCA
ACCCACGAAACGAGTGTGCGAGTGCTCAGCCGGTCGAAAAGGCAGAATGCACAAGCCAGAGACCG
ACCTGATCTCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCTGATCTTACAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCAATCGG
AGAGGCACAACACACAAGCCGGGGATCAACCCGGTCCCCCTCTACGTGCTATCGGTCGCACTGCC
ACAACCCTCGATCCGACTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACAGGCATCTGGGTGCTCAGCCGACCAAAGAGGCAACATGCGCAAGCCGGGGATCGGCCCGATC
CCTCCTACGTGCTACCAATCCTACTGTCGCAACCCTCGGTCCGGTC
Found at i:30606317 original size:158 final size:159
Alignment explanation
Indices: 30605784--30606354 Score: 404
Period size: 159 Copynumber: 3.6 Consensus size: 159
30605774 GCTTCGATAT
* * * * **
30605784 GGAATGAACTCCATATGTCTAAGCCAACCCACGAAACGATCGTGTGTCTGGGTGCTCAGCCGGTC
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA--GCGTG-C-GGGTGCTCAGCCGACC
* * * * * * * * ** * *
30605849 GAAAAGGCAGAATGCACAAGCCAGGGACCGGCCTGATCCTCTCCTGT--GTGCTGTCGATC-CTG
62 GGAGAGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCC-C-CCTCTACGTGCTACCAATCGC-A
* * * * * *
30605911 CTACCGCAACCCTTGATCTGATCTGATCTTACACTG
124 CTGCCACAACCCTCGATCTGGTCTGATCTTAGAATG
* * * * * *
30605947 GTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGTACTGAGCCAATCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAG
* **
30606012 AGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTATCGGTCGCACTGCCAC
66 AGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCAATCGCACTGCCAC
* **
30606077 AACCCTCGATCT-GACTGGGGCTTAGACAT-
131 AACCCTCGATCTGGTCT-GATCTTAGA-ATG
* * * * * *
30606106 GGACTGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGTGGGTGCTCAGCCGACCGGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGTGCTCAGCCGACCGGA
* ** * * * * *
30606170 GAGGCA-ACATGCGTAAGCCGGGGATTGGCCTGGTCCCTC-CTGCGTGCTACCAATC-CTACTGT
65 GAGGCAGA-ACGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCAATCGC-ACTGC
** *
30606232 CGTAACCCTCGGTCTGGTCTGATCTTAGAATG
128 CACAACCCTCGATCTGGTCTGATCTTAGAATG
* * ** * **
30606264 GGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGACGCTCAACCGACAAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAG
* * *
30606329 AGGCAGGATGCACAAACCGGGGATCG
66 AGGCAGAACGCACAAGCCGGGGATCG
30606355 AACGAGTGGT
Statistics
Matches: 319, Mismatches: 77, Indels: 29
0.75 0.18 0.07
Matches are distributed among these distances:
157 7 0.02
158 110 0.34
159 161 0.50
160 3 0.01
161 3 0.01
163 35 0.11
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAG
AGGCAGAACGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCAATCGCACTGCCAC
AACCCTCGATCTGGTCTGATCTTAGAATG
Found at i:30608400 original size:26 final size:26
Alignment explanation
Indices: 30608360--30608410 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30608350 TGATTCGATC
30608360 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
* *
30608386 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
30608411 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:30608558 original size:368 final size:368
Alignment explanation
Indices: 30607793--30608545 Score: 958
Period size: 368 Copynumber: 2.0 Consensus size: 368
30607783 CCCTCTACGT
**
30607793 GCTGTCGGTCCTGCTGCCACAACCCTTAGTTCCG-CTGGGGCTTAGACATGGAATGAACTCCCTA
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTT-CGACTGGGGCTTAGACATGGAATGAACTCCCTA
* ** * **
30607857 TGCCTAAGCCAAACCATGAAACGGGCGTACGGGCTTTCAACCGGCCAGAGAGGCAGAATGCAAAA
65 TGCCTAAGCCAAACCACGAAACGAACGTACGAGCGCTCAACCGGCCAGAGAGGCAGAATGCAAAA
* ** * *
30607922 GCCAGGGATCGGTCCAGTCCCCCCTGTATGCTATCGATCCTGCTGTCGCAACCCTCGATCTGATC
130 GCCAGGGATCGGCCCAGTCCCCCCTACATGCTATCGATCCTACTGCCGCAACCCTCGATCTGATC
* * *
30607987 CAATCTTAGACTAGGAATGAACTTCATATGCTTAGACTGGGGATACCTCTGTATGCCTAAGTCAA
195 CAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATAACTCCGTATGCCTAAGTCAA
** * * * * * * *
30608052 CCCATGAAACGAGCGTACGGACGCTCAGCCGATCGAAGAGGTCGATCGGAGAGACATAATGTACA
260 CCCACAAAACAAGCGTACGGACGCTCAGCCGACCGAAGAGGCCAACCGGAGAGACAGAATGCACA
*
30608117 AGCCAGGGATCAACCCGATCCCTCTCTACGTGCTGTCGATCCCC
325 AGCCAGGGATCAACCCGATCCCTCCCTACGTGCTGTCGATCCCC
*
30608161 GCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * * *
30608226 GCCTAAGCC-AACGTACGAAATGAACGTGCGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAA
66 GCCTAAGCCAAAC-CACGAAACGAACGTACGAGCGCTCAACCGGCCAGAGAGGCAGAATGCAAAA
* *
30608290 GCCGGGGATCGGCCC-GATCCCCCCTACATGCTGTCGATCCTACTGCCGCAACCCTCGATCTGAT
130 GCCAGGGATCGGCCCAG-TCCCCCCTACATGCTATCGATCCTACTGCCGCAACCCTCGATCTGAT
* * * *
30608354 TCGATCTTAGACTAGGAATGAACTCCGTATGGTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
194 CCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGAT-AACTCCGTATGCCTAAGTC
* * * ** *
30608419 AACCCACAAAACAAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCCAACCGGAGAGGTAGAATGCG
258 AACCCACAAAACAAGCGTACGGACGCTCAGCCGACCGAAGAGGCCAACCGGAGAGACAGAATGCA
* * * * * *
30608484 CAAGCCAGGGATCGACTCGGTCCCTCCCTGCTTGCTGTCGAT-CCT
323 CAAGCCAGGGATCAACCCGATCCCTCCCTACGTGCTGTCGATCCCC
30608529 GCTG-CTGGTCCTGCTGC
1 GCTGTC-GGTCCTGCTGC
30608546 TGTAACCCTC
Statistics
Matches: 328, Mismatches: 52, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
367 7 0.02
368 218 0.66
369 103 0.31
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (368 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAAACCACGAAACGAACGTACGAGCGCTCAACCGGCCAGAGAGGCAGAATGCAAAAG
CCAGGGATCGGCCCAGTCCCCCCTACATGCTATCGATCCTACTGCCGCAACCCTCGATCTGATCC
AATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATAACTCCGTATGCCTAAGTCAAC
CCACAAAACAAGCGTACGGACGCTCAGCCGACCGAAGAGGCCAACCGGAGAGACAGAATGCACAA
GCCAGGGATCAACCCGATCCCTCCCTACGTGCTGTCGATCCCC
Found at i:30609842 original size:26 final size:26
Alignment explanation
Indices: 30609806--30609858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30609796 CTGGTCTGAT
* *
30609806 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30609832 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30609858 C
1 C
30609859 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30610914 original size:26 final size:26
Alignment explanation
Indices: 30610873--30610925 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30610863 TCGGTTTCAT
*
30610873 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
30610899 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
30610925 C
1 C
30610926 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30611175 original size:196 final size:197
Alignment explanation
Indices: 30610871--30611228 Score: 504
Period size: 196 Copynumber: 1.8 Consensus size: 197
30610861 GTTCGGTTTC
*
30610871 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
30610936 CCACGAAACAAGCGTACGGGTGCTCAGCCAGCTGGAGAGGCAAAATACGCAAGCTGGGGATCGAC
66 CCACGAAACAAGCGTACGGGTGCTCAACCAGATGAAGAGGCAAAATACGCAAGCTGGCGATCGAC
* * * *
30611001 TCGGT-CCCCTCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCCAACCTCAGTCCAGTC
131 CCGATCCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCCAACCTCAGTCCAGTC
30611065 TG
196 TG
* * * ** *
30611067 ATCTTAGTCTGGGAATGGACTCCGTATGCTTAGAC-ATGGAATGAACTCCGTATGTGTAAGTGAA
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAA
** * * *
30611131 CCCACGAAATGAGTGTACGGGTGCTCAACCGGATGAAGAGGCAAAATGCGCAAGCTGGCGATCGA
65 CCCACGAAACAAGCGTACGGGTGCTCAACCAGATGAAGAGGCAAAATACGCAAGCTGGCGATCGA
*
30611196 CCCGATCCCCCCCTACGTGCTGTCGATCTTGCT
130 CCCGATCCCCCCCTACGTGCTGTCGATCCTGCT
30611229 ACCGTAACCC
Statistics
Matches: 139, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 115 0.83
197 23 0.17
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (197 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACAAGCGTACGGGTGCTCAACCAGATGAAGAGGCAAAATACGCAAGCTGGCGATCGAC
CCGATCCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCCAACCTCAGTCCAGTC
TG
Found at i:30611612 original size:26 final size:26
Alignment explanation
Indices: 30611571--30611623 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30611561 CCGGTCCGAT
*
30611571 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30611597 CTTAGACTAGGG-ATGACCTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
30611623 C
1 C
30611624 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30613706 original size:26 final size:26
Alignment explanation
Indices: 30613677--30613729 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30613667 GTTGACTTAC
*
30613677 GCATACGGAGGTCA-TCCCTAGTCTAA
1 GCATACGAAGGTCATTCCC-AGTCTAA
*
30613703 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
30613729 G
1 G
30613730 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCCAGTCTAA
Found at i:30614230 original size:26 final size:26
Alignment explanation
Indices: 30614180--30614231 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30614170 TTCACTTACA
* *
30614180 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTCCATTCCATGACTAAG
30614206 CATACGGAGTCCATTCCCA-GACTAAG
1 CATACGGAGTCCATT-CCATGACTAAG
30614232 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTCCATTCCATGACTAAG
Found at i:30614404 original size:26 final size:26
Alignment explanation
Indices: 30614375--30614427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30614365 GTTGACTTAG
*
30614375 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
30614401 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
30614427 G
1 G
30614428 ATGAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:30614429 original size:196 final size:197
Alignment explanation
Indices: 30614072--30614429 Score: 513
Period size: 196 Copynumber: 1.8 Consensus size: 197
30614062 GGGTTGCGGT
* * * * *
30614072 AGCAAGATCGACAGCACGTAGGAGGGGATCGGGTCGATCGCCAGCTTGCGCATTTTGCCTCTTCA
1 AGCAAGATCGACAGCACGCAGGAGGGGACCGAGTCGATCCCCAGCTTGCGCATTTTGCCTCTCCA
* * *
30614137 TCCGGTTGAGCACCCGTACACTCATTTCGTGGGTTCACTTACACATACGGAGTTCATTCCATGTC
66 GCCGGCTGAGCACCCGTACACTCATTTCGTGGGTTCACTTACACATACGGAGTTCATACCATGTC
30614202 TAAGCATACGGAGTCCATTCCCAGACTAAGATCAGACTGGACTGAGGTTGGCGGCAGCAGGACCA
131 TAAGCATACGGAGTCCATTCCCAGACTAAGATCAGACTGGACTGAGGTTGGCGGCAGCAGGACCA
30614267 GC
196 GC
* *
30614269 AGCAGGATCGACAGCACGCA-GAGGGGACCGAGTCGATCCCCAGCTTGCGTATTTTGCCTCTCCA
1 AGCAAGATCGACAGCACGCAGGAGGGGACCGAGTCGATCCCCAGCTTGCGCATTTTGCCTCTCCA
* * ** * **
30614333 GCTGGCTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATACC-TAGT
66 GCCGGCTGAGCACCCGTACACTCATTTCGTGGGTTCACTTACACATACGGAGTTCATACCAT-GT
* * *
30614397 CTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
130 CTAAGCATACGGAGTCCATTCCCAGACTAAGAT
30614430 GAAACCGAAC
Statistics
Matches: 140, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
195 1 0.01
196 121 0.86
197 18 0.13
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (197 bp):
AGCAAGATCGACAGCACGCAGGAGGGGACCGAGTCGATCCCCAGCTTGCGCATTTTGCCTCTCCA
GCCGGCTGAGCACCCGTACACTCATTTCGTGGGTTCACTTACACATACGGAGTTCATACCATGTC
TAAGCATACGGAGTCCATTCCCAGACTAAGATCAGACTGGACTGAGGTTGGCGGCAGCAGGACCA
GC
Found at i:30615464 original size:26 final size:26
Alignment explanation
Indices: 30615435--30615487 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30615425 GTTGACTTAG
* * *
30615435 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAATCTAA
*
30615461 GCATACGAACTTCATTCCCAATCTAA
1 GCATACGAACTTCATCCCCAATCTAA
30615487 G
1 G
30615488 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAATCTAA
Found at i:30615930 original size:283 final size:283
Alignment explanation
Indices: 30615423--30615933 Score: 722
Period size: 283 Copynumber: 1.8 Consensus size: 283
30615413 CTCGTTTCGT
* *
30615423 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAACTTCATTCCCAATCTAAG
1 GGGTTGACTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATACGAACTTCATTCCCAATCTAAG
* * * * *
30615488 ATCAGACCAGATAGAGGGTTACAGCAGTAGGATCGACAGCACGTAGGGGTGGATCAGGCCTATCC
66 ATCAGACCAGATAGAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGTGGACCAGACCGATCC
* * * * *
30615553 CCGGCTTATGCATTTTGCCTCTCCGGTCGGCTTAGCGCCCGCGCTCATTTCGTGGGTTGGCTTAG
131 CCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGACCGCGCCCATTTCGTGGGTTGGCTTAG
*
30615618 GCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATCGAGGGTTATGGCAGTAGGACCAGGT
196 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATCGAGGGTTATGGCAGTAGGACCAGGT
30615683 AGCGGGATCGACAGCACGCAGAG
261 AGCGGGATCGACAGCACGCAGAG
* * * *
30615706 GGGTTGACTTAGGCATATAGAGGTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAG
1 GGGTTGACTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATACGAACTTCATTCCCAATCTAAG
* * * * *
30615771 ATCAGATCAGATTGA-GGTTGCAGCAGCAGGATCGATAGCATGCAGGGG-GGACC-GAACCGATC
66 ATCAGACCAGATAGAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGTGGACCAG-ACCGATC
*** * * *
30615833 GTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGACCGTATGCCCGTTTCGTGGGTTGGCT
130 CCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGACCG--CGCCCATTTCGTGGGTTGGCT
30615898 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
193 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
30615934 CAAAACTAAG
Statistics
Matches: 197, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
280 1 0.01
281 43 0.22
282 28 0.14
283 125 0.63
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (283 bp):
GGGTTGACTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATACGAACTTCATTCCCAATCTAAG
ATCAGACCAGATAGAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGTGGACCAGACCGATCC
CCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGACCGCGCCCATTTCGTGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATCGAGGGTTATGGCAGTAGGACCAGGT
AGCGGGATCGACAGCACGCAGAG
Found at i:30616844 original size:26 final size:26
Alignment explanation
Indices: 30616797--30616847 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30616787 TTGACTTAGG
*
30616797 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCACAGTCTAAC
* *
30616823 CATACGGAGTTCATTCATAGTCTAA
1 CATACGGAGTTCATCCACAGTCTAA
30616848 GATCGAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCACAGTCTAAC
Done.