Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 331 of 402
Found at i:30617626 original size:158 final size:160
Alignment explanation
Indices: 30617376--30617679 Score: 339
Period size: 158 Copynumber: 1.9 Consensus size: 160
30617366 TCTAAGCCCC
* * * * *
30617376 AACGGAACTAAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCTGGTTGATCCCCGA
1 AACGGAACTAAGGGTTGCGGCAGCAAGACCGACAGCACGTAGAGGGGCACCGGGTCGATCCCCGA
* * * * * **
30617441 CTTACGCATTATGCCTCTCCGGTCAGCTCAACGCCCG-AGCGCTCATTTCGTGGTTTAACTTAGG
66 CTTACGCATTATGCCTCTCCGATCAGCTCAACACCCGCA-CACTCATTTCATGGGTTAACTTACA
*
30617505 CATACGGAGTTCATTCCCAGCCTAAGATTGG
130 CATACGAAGTTCATTCCCAGCCTAAGATTGG
* * * *
30617536 AACGG-ACTGAGGGTTGCGGTAGCAAGATCGATAGCACGTAG-GGGGCACCGGGTCGATCCCC-A
1 AACGGAACTAAGGGTTGCGGCAGCAAGACCGACAGCACGTAGAGGGGCACCGGGTCGATCCCCGA
* * * * * *
30617598 GCTTGCGCATTCTGCCTCTTC-ATCCAGCTGAGCACCCGCACACTCATTTCATGGGTTCACTTAC
66 -CTTACGCATTATGCCTCTCCGAT-CAGCTCAACACCCGCACACTCATTTCATGGGTTAACTTAC
30617662 ACATACGAAGTTCATTCC
129 ACATACGAAGTTCATTCC
30617680 ATGTCTAAGC
Statistics
Matches: 118, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
157 2 0.02
158 80 0.68
159 31 0.26
160 5 0.04
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (160 bp):
AACGGAACTAAGGGTTGCGGCAGCAAGACCGACAGCACGTAGAGGGGCACCGGGTCGATCCCCGA
CTTACGCATTATGCCTCTCCGATCAGCTCAACACCCGCACACTCATTTCATGGGTTAACTTACAC
ATACGAAGTTCATTCCCAGCCTAAGATTGG
Found at i:30619967 original size:26 final size:26
Alignment explanation
Indices: 30619917--30619968 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30619907 TTCGCTTACA
** *
30619917 CATACGAAGTTCATTCCTTGTCTAAG
1 CATACGAAGTTCATTCCCAGACTAAG
*
30619943 CATACGGAGTTCATTCCCAGACTAAG
1 CATACGAAGTTCATTCCCAGACTAAG
30619969 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGACTAAG
Found at i:30620282 original size:513 final size:504
Alignment explanation
Indices: 30618921--30620362 Score: 1311
Period size: 513 Copynumber: 2.8 Consensus size: 504
30618911 GTTGACTTAG
* ** * * *
30618921 GCATACGGTGTTCATTCCCATTCTAAAGATCAGACCAGACCGAGGGTTA-CGACAGTAGGATTGG
1 GCATACGGAGTTCATTCCCAGACT-AAGATCAAACCAGACCGAGGG-TAGCGACAGTAGGATCGA
* * * * * *
30618985 TAGCACGCA-GGAGGGACC-AGGCCAATCCCCGGCTTACGCATGT-T-GCTCTCCGGTCGGCTGA
64 CAGCACACATGGAGGGACCGA-GCCAATCCCCGGCTTACACAT-TCTACCTCTCCGATCGACTGA
* * * * *
30619046 GCACCCA-CATGC-CTGTTTCCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAAGCC
127 GCA-CCAGCACGCTC-ATTT-CGTCGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCC
* * * * * *
30619109 CC-AGTCAGA-TCGAGGGTTGTGGCAG-TGCGACCGATAGCACGTAGAGGGGGACCGGGCTGATC
188 CCAACT-GGACT-GAGGGTTGTGGCAGCAG-GACCGACAGCACGTAGAGGGGGATCGGTCTGATC
* * * ***
30619171 CCCGGCTTGTGCGTTCTACCTCTCCGATTGGCTCAGTACCCGCACGATCGTTTCGTGGGTTGACT
250 CCCGGCTCGTGCATTATACCTCTCCGATTGGCTCAACGCCCGCACGATCGTTTCGTGGGTTGACT
* * * * *
30619236 TAGGCATACGGAGTTCATTACCAGTGTAAGATCAGATCAGATCAAGGGTTGCGGTAGCAGGATCG
315 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCG
* * * * ** ** * * *
30619301 ACAGCACACAGGAGAGGATCAGGCCGGTCCCTGGCTTGTGCATTCTGCCTTTTCGACCGGCTGAG
380 ACAGCACGCAGGGGA-GACCAGGCCGATCCCTAACTTGCACATTCTACCTCTTCAACCGGCTGAG
* * * * *
30619366 CACCCAGACACACGATCGTTTCGTGGGTTGGCTTAGACATATGGAGTTCATTCCATATCGAA
444 CACCCAGACACAC-ATCGTTTCGTAGGTTCGCTTACACATACGAAGTTCATTCCATATCGAA
* * * * *
30619428 GCATACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGACTAAGATCAAACCAGACCGAGGGTAGCGACAGTAGGATCGACA
** * * * * ** *
30619493 GCACGTATGGAGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTTGATCGGCTGAGCAC
66 GCACACATGGAGGGACCGAGCCAATCCCCGGCTTACACATTCTACCTCTCCGATCGACTGAGCAC
* * * * *
30619558 CAGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCCCCAGCCG
131 CAGCACGCTCATTTCGTCGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAACTG
* * *
30619623 GACCGAGGGTTGTGGTAGCAGGACTGGCAACAGGATCAACAGCACGTAGAGGGGGACTAGGT-TG
195 GACTGAGGGTTGTGGCAGCAGGA----C--C--G----ACAGCACGTAGAGGGGGA-TCGGTCTG
* * ** * * *
30619687 ATCCCCGACTTACGT--ATTATACCTCTCCAACCGGCT-AAGCGCCCGCACGCTCCTTTCATGGG
247 ATCCCCGGC-T-CGTGCATTATACCTCTCCGATTGGCTCAA-CGCCCGCACGATCGTTTCGTGGG
*
30619749 TTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGACCGAGGGTTACGGTAGCA
309 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCA
* * *
30619814 AGATCGACAGCACGCAGGGGAGACCAGGTCGATCTCTAACTTGCACATTCTACCTCTTCAACCGG
374 GGATCGACAGCACGCAGGGGAGACCAGGCCGATCCCTAACTTGCACATTCTACCTCTTCAACCGG
* * * *
30619879 CTGAGCACTC-G-CACAC-TCGTTTCGTAGGTTCGCTTACACATACGAAGTTCATTCCTTGTCTA
439 CTGAGCACCCAGACACACATCGTTTCGTAGGTTCGCTTACACATACGAAGTTCATTCCATATCGA
30619941 A
504 A
*
30619942 GCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGCTGGCGGTAGCAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGACTAAGATCAAACCAGACCGA-----G-GGTAGC--GA-CAGTA
* * * * * ** *
30620007 GCAGTATCGATAGCACACA-GGGGGGACCGAGCTAATCCTCGGCTTACGCATTCTGTCTCTCCGG
57 G--G-ATCGACAGCACACATGGAGGGACCGAGCCAATCCCCGGCTTACACATTCTACCTCTCCGA
* * *
30620071 TTGACTGAGCTCCCA-CACGCTCATTTTGTCGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTC
119 TCGACTGAGC-ACCAGCACGCTCATTTCGTCGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTC
* * *
30620135 TAAGCCCCAACTGGACTAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGTCCG
182 TAAGCCCCAACTGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGTCTG
* * *
30620200 ATCCCCGGCTCGTGCATTATACCTCTTCGATTGGCTCAACGCCCGCACGTTCGTTCCGTGGGTTG
247 ATCCCCGGCTCGTGCATTATACCTCTCCGATTGGCTCAACGCCCGCACGATCGTTTCGTGGGTTG
* * * * * * **
30620265 GCTTATGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGA
312 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGA
* * *
30620330 TCGATAGCACGCAGGGGGGACCAGGCTGATCCC
377 TCGACAGCACGCAGGGGAGACCAGGCCGATCCC
30620363 CGGCTTGCGC
Statistics
Matches: 752, Mismatches: 139, Indels: 82
0.77 0.14 0.08
Matches are distributed among these distances:
505 1 0.00
506 41 0.05
507 110 0.15
508 23 0.03
509 1 0.00
511 4 0.01
512 5 0.01
513 149 0.20
514 79 0.11
515 1 0.00
516 5 0.01
517 2 0.00
518 43 0.06
519 140 0.19
520 8 0.01
521 3 0.00
522 2 0.00
523 6 0.01
524 2 0.00
525 114 0.15
526 13 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (504 bp):
GCATACGGAGTTCATTCCCAGACTAAGATCAAACCAGACCGAGGGTAGCGACAGTAGGATCGACA
GCACACATGGAGGGACCGAGCCAATCCCCGGCTTACACATTCTACCTCTCCGATCGACTGAGCAC
CAGCACGCTCATTTCGTCGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAACTGG
ACTGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGTCTGATCCCCGGCTCGTG
CATTATACCTCTCCGATTGGCTCAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
GGGAGACCAGGCCGATCCCTAACTTGCACATTCTACCTCTTCAACCGGCTGAGCACCCAGACACA
CATCGTTTCGTAGGTTCGCTTACACATACGAAGTTCATTCCATATCGAA
Found at i:30620653 original size:27 final size:26
Alignment explanation
Indices: 30620623--30620676 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
30620613 GTTGACTTAG
30620623 GCATACGGAGTTCATTCCTAAGTCTAA
1 GCATACGGAGTTCATTCC-AAGTCTAA
* *
30620650 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
30620676 G
1 G
30620677 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:30621004 original size:159 final size:158
Alignment explanation
Indices: 30620650--30621048 Score: 358
Period size: 159 Copynumber: 2.5 Consensus size: 158
30620640 CTAAGTCTAA
* * * * * * *
30620650 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGAATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGAACCGACA
* * * * *** * * *
30620715 GCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTTTGCCTCTCCGATCGGCTGAGCGGC
66 GCATGCAGGGGGGACCGAGCCAATCCCCAGCTTACACATTACACCTATCCGATCGGCTCAGCGCC
* * *
30620780 CGCACGCTCGTTTCATGGGTTTGCTTAC
131 CACACACTCGTTACATGGGTTTGCTTAC
* * ** * * * * *
30620808 GCATAGGGAGTTCATT-CCATGTTTAAGCCCCTG-TCAGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGAACCGA
* * * *
30620871 CAGCATGCAGAGGGGGACCGAGCTAATCCTCAGTTTACGCATTACACCTATCCGA-CAGGCTCAG
64 CAGCATGCAG-GGGGGACCGAGCCAATCCCCAGCTTACACATTACACCTATCCGATC-GGCTCAG
*
30620935 CGCCCACACACTCGTTACATGGG-TTGACTTAG
127 CGCCCACACACTCGTTACATGGGTTTG-CTTAC
* * *
30620967 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCA-AGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGA-ACCGAC
**
30621031 AGCGCGCAGGGGGGACCG
65 AGCATGCAGGGGGGACCG
30621049 GGTCGGTCCT
Statistics
Matches: 187, Mismatches: 46, Indels: 16
0.75 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 67 0.36
159 114 0.61
160 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGAACCGACA
GCATGCAGGGGGGACCGAGCCAATCCCCAGCTTACACATTACACCTATCCGATCGGCTCAGCGCC
CACACACTCGTTACATGGGTTTGCTTAC
Found at i:30621124 original size:158 final size:156
Alignment explanation
Indices: 30620650--30621151 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 156
30620640 CTAAGTCTAA
* * * * *
30620650 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGAATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAG-ATCGAT
* * * *
30620714 AGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTTTGCCTCTCCGA-TCGGCTGAGCG
64 AGCATGCAGGGGGGACCGGG-CGATCCTCAGCTTACGCATTTTGCCTCTCCGACT-GGCTGAGCG
* * * * *
30620778 GCCGCACGCTCGTTTCATGGGTTTGCTTAC
127 CCCACACACTCGTTTCATGGGTTGGCTTAG
* * ** * * * * **
30620808 GCATAGGGAGTTCATTCCATGTTTAAGCCCCTG-TCAGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGC-AGATCGAT
* * * *** * * *
30620872 AGCATGCAGAGGGGGACCGAGCTAATCCTCAGTTTACGCATTACACCTATCCGACAGGCTCAGCG
64 AGCATGCAG-GGGGGACCGGGC-GATCCTCAGCTTACGCATTTTGCCTCTCCGACTGGCTGAGCG
* *
30620937 CCCACACACTCGTTACATGGGTTGACTTAG
127 CCCACACACTCGTTTCATGGGTTGGCTTAG
*
30620967 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGC-AGATCGAT
** * * * *
30621031 AGCGCGCAGGGGGGACCGGGTCGGTCCTTAGCTTACGCATTTTGCCTCTCCGACTGGTTGAGCTC
64 AGCATGCAGGGGGGACCGGG-CGATCCTCAGCTTACGCATTTTGCCTCTCCGACTGGCTGAGCGC
* * *
30621096 CCACACACTCATTTCGTGGGTAGGCTTAG
128 CCACACACTCGTTTCATGGGTTGGCTTAG
30621125 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30621152 CATACGGAGT
Statistics
Matches: 269, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 142 0.53
159 118 0.44
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGATCGATAG
CATGCAGGGGGGACCGGGCGATCCTCAGCTTACGCATTTTGCCTCTCCGACTGGCTGAGCGCCCA
CACACTCGTTTCATGGGTTGGCTTAG
Found at i:30621161 original size:26 final size:26
Alignment explanation
Indices: 30621125--30621177 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30621115 GTAGGCTTAG
30621125 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
30621151 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
30621177 G
1 G
30621178 ACTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:30621541 original size:26 final size:26
Alignment explanation
Indices: 30621505--30621557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30621495 GTTGACTTAG
* *
30621505 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
30621531 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
30621557 G
1 G
30621558 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:30621835 original size:159 final size:159
Alignment explanation
Indices: 30621531--30621866 Score: 395
Period size: 159 Copynumber: 2.1 Consensus size: 159
30621521 GCCAGTCTAA
* *
30621531 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAGCGTTACGGTAGCAGGACCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAGCGTTACAGTAGCAAGACCGACA
* * ** * * *
30621596 GCATACAGAAGGGGATCGGACCAATCCCTGGCTTGTGCATTATGCGTCTCCGACCAACTCAACGC
66 GCACACAGAAGGGGATCGGACCAATCCCTGGCCTACGCATTATACCTATCCGACCAACTCAACGC
*
30621661 CTGAACGCTCATTTCGTGGGTTGACTTAG
131 CCGAACGCTCATTTCGTGGGTTGACTTAG
* * * * * * *
30621690 GCATGCGGAGTTCATTCCCAATCTAAGATTGGATTGAACCGAGGGTTGCAGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAGCGTTACAGTAGCAAGACCGACA
* ** * * * **
30621755 GCACACAGGAGGGGATCGGGTCAAT-CCTCGGCCTACGCATTCTACCTATCTGACCAACTGAGTG
66 GCACACAGAAGGGGATCGGACCAATCCCT-GGCCTACGCATTATACCTATCCGACCAACTCAACG
* * * *
30621819 CCCGTACTCTCGTTTCGTGGGTTGGCTTAG
130 CCCGAACGCTCATTTCGTGGGTTGACTTAG
30621849 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
30621867 ATGTCTAAGC
Statistics
Matches: 146, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
158 3 0.02
159 143 0.98
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAGCGTTACAGTAGCAAGACCGACA
GCACACAGAAGGGGATCGGACCAATCCCTGGCCTACGCATTATACCTATCCGACCAACTCAACGC
CCGAACGCTCATTTCGTGGGTTGACTTAG
Found at i:30621885 original size:26 final size:26
Alignment explanation
Indices: 30621849--30621901 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30621839 GTTGGCTTAG
30621849 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
30621875 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30621901 G
1 G
30621902 ATCATATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30622258 original size:26 final size:26
Alignment explanation
Indices: 30622229--30622281 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30622219 GTTGACTTAG
*
30622229 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30622255 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30622281 G
1 G
30622282 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30622755 original size:159 final size:157
Alignment explanation
Indices: 30622251--30622756 Score: 445
Period size: 159 Copynumber: 3.2 Consensus size: 157
30622241 TATCCCCAGT
* * * * *
30622251 CTAA-GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGTAGGGT
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCACATCGGACCGAGGGTTGCGGCAGTAGGAT
* * * * * *
30622315 CAGCAGCACGTAG-GGGGACCGGGCGGATCCCCGGCTTGTGCATTTTGCCTCTCCAATCGGCTGA
66 CAGCAGCACGCAGAGGGGACCGGTC-GATCCCCGGCTTATGCATTTTGCCTTTCCGATCGGTTGA
* *
30622379 ATGCCCGCACG-TCCGTTTCGTGGGTTGG
130 ACGCCCGCACGCT-CGTTTCATGGGTTGG
* * * * * * * * *
30622407 CTTAGTCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAGACCGAAGGTTGTGGCAGTAAG
1 CTAAGGCATACGGAGTTCATTCCCA-GTCTAAGATCACA-TCGGACCGAGGGTTGCGGCAGTAGG
* * * * * * *
30622470 ACCAGCAGCACGCAGAGCAGGACCGGGTCGATCCCCGGCTTGCT-CATTATGCCGCTT-CGACCA
64 ATCAGCAGCACGCAGAG-GGGACC-GGTCGATCCCCGGCTT-ATGCATTTTGCC-TTTCCGATCG
* * * * * *
30622533 GTTCAACTCCCGAACACTCATTTCATGGGTTGA
125 GTTGAACGCCCGCACGCTCGTTTCATGGGTTGG
* * *
30622566 CTAAGGCATACAGAGTTCATTCCCAATCTAAGATCACACCGGACCGAGGGTTGCGGCAGTAGGAT
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCACATCGGACCGAGGGTTGCGGCAGTAGGAT
* * *
30622631 -TGACAGCACGCAGGAGGGGACCAAGTCGATCCCCGGCTTATGCATTTTGCCTTTCCGGTCGGTT
66 CAG-CAGCACGCA-GAGGGGACC-GGTCGATCCCCGGCTTATGCATTTTGCCTTTCCGATCGGTT
* *
30622695 GAGCGCCCGCACGCTTGTTTCATGGGTTGG
128 GAACGCCCGCACGCTCGTTTCATGGGTTGG
*
30622725 CTGAGGCATACGGAGTTCATT-CCATGTCTAAG
1 CTAAGGCATACGGAGTTCATTCCCA-GTCTAAG
30622757 CATATGGAGT
Statistics
Matches: 267, Mismatches: 67, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 8 0.03
157 52 0.19
158 8 0.03
159 184 0.69
160 15 0.06
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCACATCGGACCGAGGGTTGCGGCAGTAGGAT
CAGCAGCACGCAGAGGGGACCGGTCGATCCCCGGCTTATGCATTTTGCCTTTCCGATCGGTTGAA
CGCCCGCACGCTCGTTTCATGGGTTGG
Found at i:30622760 original size:26 final size:26
Alignment explanation
Indices: 30622730--30622782 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30622720 GTTGGCTGAG
30622730 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30622756 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30622782 G
1 G
30622783 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30622893 original size:185 final size:185
Alignment explanation
Indices: 30622578--30622940 Score: 469
Period size: 185 Copynumber: 2.0 Consensus size: 185
30622568 AAGGCATACA
* * * *
30622578 GAGTTCATTCCCAATCTAAGATCACACCGGACCGAGGGTTGCGGCAGTAGGATTGACAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCACACAGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
* * * * *
30622643 GGAGGGGACCAAGTCGATCCCCGGCTTATGCATTTTGCCTTTCCGGTCGGTTGAGCGCCCGCACG
66 GGAGGGGACCAAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACG
* ** **
30622708 CTTGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
131 CTCGTTTCATCAGTTGGCTGAGGCATACAAAGTTCATTCCATGTCTAAGCATATG
*
30622763 GAGTTCATTCCCAGTCTAAGATCGA-ATCAGGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
1 GAGTTCATTCCCAATCTAAGATC-ACA-CAGGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
* * * * * * *
30622827 TAGG-GGGGATCGAGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCTCGCA
64 CAGGAGGGGACCAAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCA
* * *
30622891 CGCTCGTTTCGTCAGTTGGCTTAGGCGTACAAAGTTCATTCCATGTCTAA
129 CGCTCGTTTCATCAGTTGGCTGAGGCATACAAAGTTCATTCCATGTCTAA
30622941 TCCCCAGCCA
Statistics
Matches: 151, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
185 114 0.75
186 37 0.25
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (185 bp):
GAGTTCATTCCCAATCTAAGATCACACAGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
GGAGGGGACCAAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACG
CTCGTTTCATCAGTTGGCTGAGGCATACAAAGTTCATTCCATGTCTAAGCATATG
Found at i:30623285 original size:356 final size:357
Alignment explanation
Indices: 30622689--30623384 Score: 866
Period size: 356 Copynumber: 2.0 Consensus size: 357
30622679 GCCTTTCCGG
* * * * *
30622689 TCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCAAACGGAGTTCATCCCATGTCT
*
30622754 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGGACCGAGGGTTGCGACAGCAGGATCG
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGGACCGAGGGTTGCGACAGCAGGATCG
* * * * * * ** *
30622819 ACAGCACGTAGGGGGGATCGAGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGT
131 ACAGCACGCAAGGGGGATCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCCAACCGACTGAGC
* * * *
30622884 GCTCGCACGCTCGTTTCGTCAGTTGGCTTAGGCGTACAAAGTTCATTCCATGTCTAATCCCCAGC
196 GCTCGCACCCTCATTTCGTCAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
30622949 CAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGATCGGGCTAATCCCCGGCTT
261 CAGACCGAGGGTTATGGCAGCAGGACCGGCAACACACAGAGGGGGATCGGGCCAATCCCCGGCTT
*
30623014 GCGCATTATGCCTCTCCAATCAGCCTATCCAA
326 ACGCATTATGCCTCTCCAATCAGCCTATCCAA
* * * *
30623046 TCGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCAAATGGAGTTCATCCCCA-GTC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCAAACGGAGTTCAT-CCCATGTC
* * *
30623110 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGA-ACGCAGGAT
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGGACCGAGGGTTGCGACA-GCAGGAT
* * * *
30623173 CGACAGCACGCAAGTGGGA-CTG-GGCTGATCCCCGGCTTGCACATTCTGCCTCTTCAACCGACT
129 CGACAGCACGCAAGGGGGATC-GAGTC-GATCCCCAGCTTGCACATTCTGCCTCTCCAACCGACT
** *** *
30623236 GAGCG-TCCGCACACCT-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCCTGTCTAAGC
192 GAGCGCT-CGCAC-CCTCATTTCGTCAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
* * * * * *
30623299 CCCAGTCGGACCGAGGGTTATGGCAGCGGGACCGGTAACACGCAGAGGGGGATCGGGCCAATCCT
255 CCCAGCCAGACCGAGGGTTATGGCAGCAGGACCGGCAACACACAGAGGGGGATCGGGCCAATCCC
30623364 CGGCTTACGCATTATGCCTCT
320 CGGCTTACGCATTATGCCTCT
30623385 TCAACCGGCT
Statistics
Matches: 286, Mismatches: 47, Indels: 13
0.83 0.14 0.04
Matches are distributed among these distances:
355 5 0.02
356 192 0.67
357 86 0.30
358 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (357 bp):
TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCAAACGGAGTTCATCCCATGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGGACCGAGGGTTGCGACAGCAGGATCG
ACAGCACGCAAGGGGGATCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCCAACCGACTGAGC
GCTCGCACCCTCATTTCGTCAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGC
CAGACCGAGGGTTATGGCAGCAGGACCGGCAACACACAGAGGGGGATCGGGCCAATCCCCGGCTT
ACGCATTATGCCTCTCCAATCAGCCTATCCAA
Found at i:30623568 original size:159 final size:157
Alignment explanation
Indices: 30623113--30623606 Score: 451
Period size: 159 Copynumber: 3.1 Consensus size: 157
30623103 CCCAGTCTAA
* *
30623113 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGA-ACGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTACGACA-GCAGGATCGA
* * * * *
30623176 CAGCACGCAA-GTGGGACTGGGCTGATCCCCGGCTTGCACATTCTGCCTCTTCAACCGACTGAGC
64 CAGCACG-AAGGGGGGACCGGGC-AATCCCCGGCTTGCGCATTCTGCCTCTTCAACCGGCTGAGC
* * *
30623240 GTCCGCACAC-CTATTTCGTGGGTTGGCTTAG
127 GCCCGCACGCTC-ATTTCGTGGGTTGACTTAG
* * * ** * * * * **
30623271 GCATAGGGAGTTCATTCCCTGTCTAAG-CCCCAGTCGGACCGAGGGTTATGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTACGACAGCAGGATCGAC
* * * * * * * **
30623335 AACACGCAGAGGGGGATCGGGCCAATCCTCGGCTTACGCATTATGCCTCTTCAACCGGCTCAATG
65 AGCACGAAG-GGGGGACCGGG-CAATCCCCGGCTTGCGCATTCTGCCTCTTCAACCGGCTGAGCG
* *
30623400 CCCACACGCTCATTTCGTGGGTTGACTTAT
128 CCCGCACGCTCATTTCGTGGGTTGACTTAG
*
30623430 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAGGATCGACA
** * * * *
30623495 GCACGTAAGGGGGGACCGGGTCAATCCCCAACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGC
66 GCACG-AAGGGGGGACCGGG-CAATCCCCGGCTTGCGCATTCTGCCTCTTCAACCGGCTGAGCGC
* * * *
30623560 CCGTACGCTCGTTTTGTTGGTT-AGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGA-CTTAG
*
30623589 GCATACGAAGTTCATTCC
1 GCATACGGAGTTCATTCC
30623607 ATGTCAAAGC
Statistics
Matches: 259, Mismatches: 67, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 50 0.19
159 200 0.77
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAGGATCGACA
GCACGAAGGGGGGACCGGGCAATCCCCGGCTTGCGCATTCTGCCTCTTCAACCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:30623607 original size:859 final size:868
Alignment explanation
Indices: 30621616--30623643 Score: 2173
Period size: 859 Copynumber: 2.3 Consensus size: 868
30621606 GGGGATCGGA
* ** * * * * *
30621616 CCAATCCCTGGCTTGTGCATTATG-CGTCTCCGACCAACTCAACGCCTGAACGCTCATTTCGTGG
1 CCAATCCCCGGCTTACGCATTATGCCG-CTTCAACCAGCTCAACTCCCGAACGCTCATTTCGTGG
* * * * *
30621680 GTTGACTTAGGCATGCGGAGTTCATTCCCAATCTAAGATTGGATTGAACCGAGGGTTGC-AGTAG
65 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGA-CAG
* * * * * *
30621744 CAAGATCGATAGCAC-ACAGGAGGGGATCGGGTCAATCCTCGGCCTACGCATTCTACCTATCTGA
129 CAGGATCGACAGCACGA-AGGAGGGGACCGGGTCAATCCCCGGCTTACGCATTCTACCTATCCGA
*** * *
30621808 CCAACTGAGTGCCCGTACTCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
193 CCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* **
30621873 AAGCATACGGAGTTCATTCCTAGTCTAAGATCATATCGAATTGAGGGTTACGGCAGTAGGACCAG
258 AAGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGAACCGAGGGTTA--GC---A-G--CAG
* * *
30621938 CAGCAGGATCAACAGCATGCAGAGGGGACCAGGTCGATCGTAAGCTTGCACATTTTACCTCTCCG
315 CAGCAGGATCAACAGCACGCAGAGGGGACCAGGTCGATCCTAAGCTTGCACATTCTACCTCTCCG
* ** * * * ** **
30622003 GCCAGCCTCTTGCCCGGACGTTCGTTTTGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTC
380 ACCAGCCTAGTGCCCGCACGCTCGTTTCGTCAGTTGCCTTAGGCATACAAAGTTCATTCCATGTC
* * *
30622068 TAAGACCCAGTCGGACCAAGGGTTATGGCAGCAGGACAGGTAGCGGGATCATCAGCACGTAGAGG
445 TAAGACCCAGCCAGACCAAGGGTTATGGCAGCAGGA-A-GTA-CGGGA-CAGCAGCACG-AGAGG
* * * * * ***
30622133 GGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTCAGCTGGCCTCTCTGGCCGACTGAGT
505 GGGACCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTCCAGCTAGCCTATCCAACCGACTGAGT
* * * *
30622198 GCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATATGG
570 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATACGG
* * *
30622263 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGTAGGGTCAGCAGCACGTAG
635 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCAGCAGCACGAAG
** * * * * *
30622328 GGGGACCGGGCGGATCCCCGGCTTGTGCATTTTGCCTCTCCAATCGGCTGAATGCCCGCACGTCC
700 GGGGACCGGGCGGATCCCCGGCTTGCACATTCTGCCTCTCCAACCGACTGAACGCCCGCACGACC
* *
30622393 GTTTCGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGT
765 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGT
* * *
30622458 TGTGGCAGTAAGACCAGCAGCACGCAGAGCAGGACCGGG
830 TATGGCAGCAAGACCAGCAACACGCAGAGCAGGACCGGG
* * * * * * * *
30622497 TCGATCCCCGGCTTGCTCATTATGCCGCTTCGACCAGTTCAACTCCCGAACACTCATTTCATGGG
1 CCAATCCCCGGCTTACGCATTATGCCGCTTCAACCAGCTCAACTCCCGAACGCTCATTTCGTGGG
* * ** * * *
30622562 TTGACTAAGGCATACAGAGTTCATTCCCAATCTAAGATCACACCGGACCGAGGGTTGCGGCAGTA
66 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGACAGCA
* * ** * * * * * **
30622627 GGATTGACAGCACGCAGGAGGGGACCAAGTCGATCCCCGGCTTATGCATTTTGCCTTTCCGGTCG
131 GGATCGACAGCACGAAGGAGGGGACCGGGTCAATCCCCGGCTTACGCATTCTACCTATCCGACCG
* * * *
30622692 GTTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAG
196 GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
30622757 CATATGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGGACCGAGGGTT-GC-G-A-CAGCAGGAT
261 CATACGGAGTTCATTCCCAGTCTAAGATC-ATATC-GAACCGAGGGTTAGCAGCAGCAGCAGGAT
* * * * * * * **
30622817 CGACAGCACGTAGGGGGGATC-GAGTCGATCCCT-AGCTTGCGCATTCTGCCTCTCCGATC-GGT
324 CAACAGCACGCAGAGGGGACCAG-GTCGAT-CCTAAGCTTGCACATTCTACCTCTCCGACCAGCC
* * * **
30622879 TGAGTGCTCGCACGCTCGTTTCGTCAGTTGGCTTAGGCGTACAAAGTTCATTCCATGTCTAATCC
387 T-AGTGCCCGCACGCTCGTTTCGTCAGTTGCCTTAGGCATACAAAGTTCATTCCATGTCTAAGAC
* * *
30622944 CCAGCCAGACCGAGGGTTGTGGCAGCAGG-A-T-C-GG-CAGCA-CAC-AGAGGGGGATCGGGCT
451 CCAGCCAGACCAAGGGTTATGGCAGCAGGAAGTACGGGACAGCAGCACGAGAGGGGGACCGGGCT
* * * *
30623002 AATCCCCGGCTTGCGCATTATGCCTCTCCA-ATCAGCCTATCCAATCGGCTGAGTGCCCGCATGC
516 AATCCCCGGCTTGCGCATTATGCCTCTCCAGCT-AGCCTATCCAACCGACTGAGTGCCCGCACGC
*
30623066 TCGTTTCATGGGTTGACTTAGGCAAATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
580 TCGTTTCATGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
30623131 TAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGA-ACGCAGGATC-GACAGCACGCAAGTGGGAC
645 CAGTCTAAGATCAGATC-GGACCGAGGGTTACGACA-GCAGGATCAG-CAGCACG-AAGGGGGAC
* * * * *
30623193 TGGGCTGATCCCCGGCTTGCACATTCTGCCTCTTCAACCGACTGAGCGTCCGCAC-ACCTATTTC
706 CGGGCGGATCCCCGGCTTGCACATTCTGCCTCTCCAACCGACTGAACGCCCGCACGACC-ATTTC
* * *
30623257 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCCTGTCTAAGCCCCAGTCGGACCGAGGGTTATGG
770 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTATGG
** * * ** *
30623322 CAGCGGGACCGGTAACACGCAGAGGGGGATCGGG
835 CAGCAAGACCAGCAACACGCAGAGCAGGACCGGG
* * *
30623356 CCAATCCTCGGCTTACGCATTATGCCTCTTCAACCGGCTCAA-TGCCC-ACACGCTCATTTCGTG
1 CCAATCCCCGGCTTACGCATTATGCCGCTTCAACCAGCTCAACT-CCCGA-ACGCTCATTTCGTG
* * * *
30623419 GGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGGGTTACGACAG
64 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGACAG
** * *
30623484 CAGGATCGACAGCACGTAAGG-GGGGACCGGGTCAATCCCCAACTTGCGCATTCTACCTCTCCGA
129 CAGGATCGACAGCACG-AAGGAGGGGACCGGGTCAATCCCCGGCTTACGCATTCTACCTATCCGA
* * * * *
30623548 CCGGTTGAGCGCCCGTACGCTCGTTTTGTTGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCA
193 CCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
30623613 AAGCATACGGAGTTCATTCCCAGTCTAAGAT
258 AAGCATACGGAGTTCATTCCCAGTCTAAGAT
30623644 TTTGAGCCAC
Statistics
Matches: 945, Mismatches: 185, Indels: 56
0.80 0.16 0.05
Matches are distributed among these distances:
857 4 0.00
858 170 0.18
859 374 0.40
860 6 0.01
861 4 0.00
863 2 0.00
864 1 0.00
866 1 0.00
868 1 0.00
869 3 0.00
870 126 0.13
871 3 0.00
874 1 0.00
879 2 0.00
881 235 0.25
882 12 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (868 bp):
CCAATCCCCGGCTTACGCATTATGCCGCTTCAACCAGCTCAACTCCCGAACGCTCATTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGACAGCA
GGATCGACAGCACGAAGGAGGGGACCGGGTCAATCCCCGGCTTACGCATTCTACCTATCCGACCG
GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCATATCGAACCGAGGGTTAGCAGCAGCAGCAGGATCA
ACAGCACGCAGAGGGGACCAGGTCGATCCTAAGCTTGCACATTCTACCTCTCCGACCAGCCTAGT
GCCCGCACGCTCGTTTCGTCAGTTGCCTTAGGCATACAAAGTTCATTCCATGTCTAAGACCCAGC
CAGACCAAGGGTTATGGCAGCAGGAAGTACGGGACAGCAGCACGAGAGGGGGACCGGGCTAATCC
CCGGCTTGCGCATTATGCCTCTCCAGCTAGCCTATCCAACCGACTGAGTGCCCGCACGCTCGTTT
CATGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCAGCAGCACGAAGGGGGACCGGGCGGATC
CCCGGCTTGCACATTCTGCCTCTCCAACCGACTGAACGCCCGCACGACCATTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTATGGCAGCAAGACCA
GCAACACGCAGAGCAGGACCGGG
Found at i:30626698 original size:26 final size:26
Alignment explanation
Indices: 30626664--30626713 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
30626654 GACTTAGGCG
* *
30626664 TACAAAGTTTATCCCCAGTCTAAGCA
1 TACAAAGTTCATCCCCAATCTAAGCA
* *
30626690 TACAGAGTTCATTCCCAATCTAAG
1 TACAAAGTTCATCCCCAATCTAAG
30626714 ATCAGACCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (26 bp):
TACAAAGTTCATCCCCAATCTAAGCA
Found at i:30627568 original size:26 final size:26
Alignment explanation
Indices: 30627538--30627590 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30627528 GTTGACTTAG
30627538 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
30627564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
30627590 G
1 G
30627591 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:30628446 original size:26 final size:26
Alignment explanation
Indices: 30628410--30628462 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30628400 GTTGGCTTAG
30628410 GCATACGGAGTGCATT-CCATGTCTAA
1 GCATACGGAGTGCATTCCCA-GTCTAA
*
30628436 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
30628462 G
1 G
30628463 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:30628858 original size:26 final size:26
Alignment explanation
Indices: 30628829--30628881 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30628819 GTTGACTTAG
* *
30628829 GCATACGGAGTTTA-TCTCCAGTCTAA
1 GCATACCGAGTTCATTC-CCAGTCTAA
30628855 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
30628881 G
1 G
30628882 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:30629159 original size:159 final size:158
Alignment explanation
Indices: 30628989--30629357 Score: 411
Period size: 159 Copynumber: 2.3 Consensus size: 158
30628979 AAACGCCCAC
* *
30628989 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGATCGGAC
* ** * * * * *
30629053 CGAGGGTTGTGGCAACGGGACCGACAGCACACAAAGTGGGATCGAGTCGAT-CCTCGGCTTGCGC
65 CAAGGGTTACGGCAACAGGACCAACAGCACACAAAGGGGGATCGA-CCGATCCCT-GGCTTACGC
* * * **
30629117 ATTATGCCTCTCCGGTTGGTTCAGTGCCCGA
128 ATTATACCTCTCCGGTCGATTCAGCACCCGA
* * ***
30629148 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGATCGGAC
* * * ** *
30629212 TAAGGGTTACGGCAACAGGATCAACAGCACGCAGGGGGGGATGGACCGATCCCTGGCTTACGCAT
65 CAAGGGTTACGGCAACAGGACCAACAGCACACAAAGGGGGATCGACCGATCCCTGGCTTACGCAT
* * *
30629277 TCTACCTCTCCGGTCGATTGAGCACCCGC
130 TATACCTCTCCGGTCGATTCAGCACCCGA
*
30629306 ACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
30629358 GATACGGAGT
Statistics
Matches: 174, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 81 0.47
159 87 0.50
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGGACC
AAGGGTTACGGCAACAGGACCAACAGCACACAAAGGGGGATCGACCGATCCCTGGCTTACGCATT
ATACCTCTCCGGTCGATTCAGCACCCGA
Found at i:30629336 original size:158 final size:158
Alignment explanation
Indices: 30628988--30629357 Score: 406
Period size: 158 Copynumber: 2.3 Consensus size: 158
30628978 GAAACGCCCA
*
30628988 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
1 CACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
* ** * * * * *
30629053 CGAGGGTTGTGGCAACGGGACCGACAGCACACAAAGTGGGATCGAGTCGATCCTCGGCTTGCGCA
65 CAAGGGTTACGGCAACAGGACCAACAGCACACAAAGGGGGATCGAGCCGATCCTCGGCTTACGCA
* * * **
30629118 TTATGCCTCTCCGGTTGGTTCAGTGCCCG
130 TTATACCTCTCCGGTCGATTCAGCACCCG
* * ****
30629147 AACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGG
1 CACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGG
* * * ** *
30629210 ACTAAGGGTTACGGCAACAGGATCAACAGCACGCAGGGGGGGATGGA-CCGATCC-CTGGCTTAC
63 ACCAAGGGTTACGGCAACAGGACCAACAGCACACAAAGGGGGATCGAGCCGATCCTC-GGCTTAC
* *
30629273 GCATTCTACCTCTCCGGTCGATTGAGCACCCG
127 GCATTATACCTCTCCGGTCGATTCAGCACCCG
30629305 CACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAG
30629358 GATACGGAGT
Statistics
Matches: 175, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 4 0.02
158 84 0.48
159 84 0.48
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
CACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
AAGGGTTACGGCAACAGGACCAACAGCACACAAAGGGGGATCGAGCCGATCCTCGGCTTACGCAT
TATACCTCTCCGGTCGATTCAGCACCCG
Found at i:30629369 original size:26 final size:26
Alignment explanation
Indices: 30629333--30629383 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30629323 TAGCTTAGGC
30629333 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
30629359 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
30629384 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:30629561 original size:196 final size:183
Alignment explanation
Indices: 30629173--30629764 Score: 534
Period size: 196 Copynumber: 3.2 Consensus size: 183
30629163 GTTGACTTAG
* ** * * **
30629173 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA-CTAAGGGTTA-CGGCAACAGGATCAA
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGATCGGACCGAA-GG-TAGCGGCAGCAGGATCCG
* ** * * * * * * * **
30629236 CAGCACGCAGGGGG-GGATGGACCGATCCCTGGCTTACGCATTCTACCTCTCCGGTCGATTGAGC
64 CAGCACGTAGGGGGACCA-AG-CTGATCCCCGACTTACGCATTATACCTCTTCAGTCGGCTGAGC
* * **
30629300 ACCCGCACGCTCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTTCATTCCATG-TCTAA
127 ACCCGCACGCTCGTTTCGTGGGTTGA-CTTATGCATACAGAGTTCA-TCCCCGATCTAA
* * *
30629357 GGATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGATCGGACCGA-----A-GGTAGC-GG--CAG--
* * * * * *
30629422 ACAGGAT-CGACAGCATGTAAGGGGGACCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCAG
55 -CAGGATCCG-CAGCACGT-AGGGGGACCAAGCTGATCCCCGACTTACGCATTATACCTCTTCAG
*
30629486 TTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATCCCCGATCT
117 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATCCCCGATCT
30629551 AA
182 AA
** * *
30629553 GCATACGGAGTTCATTCACAGTCTAAGATTGGATCGGACCGAAGGTTGCGGCAGCAGGATCCGTA
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGATCGGACCGAAGGTAGCGGCAGCAGGATCCGCA
* * * * *
30629618 GCACGTAGGGGGATCAAGCTGATCCTCGACTTACGCATTCTACCTCTTCGGTCGGCTGAGCACCT
66 GCACGTAGGGGGACCAAGCTGATCCCCGACTTACGCATTATACCTCTTCAGTCGGCTGAGCACCC
30629683 GCACGCTCGTTTCGTGGGTTGACTT-TGGCATACAGAGTTCATCCCC-AGTCTAA
131 GCACGCTCGTTTCGTGGGTTGACTTAT-GCATACAGAGTTCATCCCCGA-TCTAA
* *
30629736 GCATACGGAGTTCATTCTCAATCTAAGAT
1 GCATACGGAGTTCATTCACAGTCTAAGAT
30629765 TGAACTGGAC
Statistics
Matches: 337, Mismatches: 50, Indels: 43
0.78 0.12 0.10
Matches are distributed among these distances:
182 2 0.01
183 124 0.37
184 47 0.14
185 4 0.01
187 3 0.01
189 4 0.01
190 9 0.03
191 3 0.01
193 2 0.01
195 4 0.01
196 127 0.38
197 8 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCACAGTCTAAGATCAGATCGGACCGAAGGTAGCGGCAGCAGGATCCGCA
GCACGTAGGGGGACCAAGCTGATCCCCGACTTACGCATTATACCTCTTCAGTCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATCCCCGATCTAA
Found at i:30629749 original size:183 final size:182
Alignment explanation
Indices: 30629173--30629887 Score: 638
Period size: 183 Copynumber: 3.8 Consensus size: 182
30629163 GTTGACTTAG
* * * * **
30629173 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTAAGGGTTACGGCAACAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACGAACGGTTGCGGCAGCAGGATCCGCA
* * * * **
30629238 GCACGCAGGGGGGGATGGA-CCGATCCCTGGCTTACGCATTCTACCTCTCCGGTCGATTGAGCAC
66 GCACGTA--GGGGGATCGAGCTGATCCC-GGCTTACGCATTCTACCTCTTCGGTCGGCTGAGCAC
* * *
30629302 CCGCACGCTCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
128 CCGCACGCTCGTTTCGTGGGTTGA-CTTTGGCATACAGAGTTCATCCCCA-GTCTAA
* ** *
30629357 GGATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA-CGA-----ACGGTTGC-GG--CAG--
* * * * * * *
30629422 ACAGGAT-CGACAGCATGTAAGGGGGACCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCAG
55 -CAGGATCCG-CAGCACGT-AGGGGGATCGAGCTGAT-CCCGGCTTACGCATTCTACCTCTTCGG
*
30629486 TTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT-GCATACAGAGTTCATCCCC-GAT
116 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT-TGGCATACAGAGTTCATCCCCAG-T
30629549 CTAA
179 CTAA
* *
30629553 GCATACGGAGTTCATTCACAGTCTAAGATTGGATCGGACCGAA-GGTTGCGGCAGCAGGATCCGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA-CGAACGGTTGCGGCAGCAGGATCCGC
* *
30629617 AGCACGTAGGGGGATCAAGCTGATCCTCGACTTACGCATTCTACCTCTTCGGTCGGCTGAGCACC
65 AGCACGTAGGGGGATCGAGCTGATCC-CGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGCACC
*
30629682 TGCACGCTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATCCCCAGTCTAA
129 CGCACGCTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATCCCCAGTCTAA
* * * * * ** * *
30629736 GCATACGGAGTTCATTCTCAATCTAAGATT-GAACTGGACGAAGGGTTACGATAGTAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GGACGAACGGTTGCGGCAGCAGGATCCGC
* * * ** * ** *
30629800 AGCACGTAAGGGGGACCG-GGTCGATTCTCGGCTTACGCATTCGGCCTCTCCGACCGGTTGAGCA
65 AGCACGT-AGGGGGATCGAGCT-GA-TCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGCA
* * *
30629864 CCCACACGCCCGTTTCATGGGTTG
127 CCCGCACGCTCGTTTCGTGGGTTG
30629888 GCTTAGGTGT
Statistics
Matches: 433, Mismatches: 69, Indels: 58
0.77 0.12 0.10
Matches are distributed among these distances:
182 10 0.02
183 150 0.35
184 107 0.25
185 6 0.01
187 3 0.01
189 2 0.00
190 10 0.02
191 3 0.01
193 2 0.00
195 9 0.02
196 124 0.29
197 7 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACGAACGGTTGCGGCAGCAGGATCCGCA
GCACGTAGGGGGATCGAGCTGATCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:30629760 original size:26 final size:26
Alignment explanation
Indices: 30629710--30629762 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30629700 GTTGACTTTG
*
30629710 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
30629736 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
30629762 G
1 G
30629763 ATTGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:30630264 original size:26 final size:26
Alignment explanation
Indices: 30630212--30630264 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30630202 GTTGGCTTAG
* * *
30630212 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTATAA
30630238 GCATACGGAGTTCAATCCCA-GTATAA
1 GCATACGGAGTTC-ATCCCATGTATAA
30630264 G
1 G
30630265 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTATAA
Found at i:30630267 original size:881 final size:886
Alignment explanation
Indices: 30628807--30630657 Score: 2180
Period size: 881 Copynumber: 2.1 Consensus size: 886
30628797 TGCCTACACA
* *
30628807 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCTCCAGTCTAAGCATACCGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTC
** * *
30628872 CCAGTCTAAGATCAGACTGAAACGAGGGTTGTGACAGCAGGATCGATAGCACGTAAGGGGGATCG
66 CCAGTCTAAGATCAGACTGAAACGAGGGTTACGACAGCAGGATCGACAGCACGTAAGGGGGACCG
** * * * * *
30628937 GGATGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAAACGCCCACACGCTCGTTTCGT
131 GGATGATCCCCGACTTACGCATTCGGCCTCTCCGACCGGCTGAAACACCCACACGCCCGTTTCAT
* * *
30629002 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
196 GGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCCAGTCAGACCGAGGGTTGTGGCA
* * * * *
30629067 ACGGGACCGACAGCACACAAAGTGGGATCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGG
261 ACGGGACAGACAGCACACAAAGGGGGATCGAGCCGATCCCCGGCCTGCGCATTATGCCTCTCCGG
** * *
30629132 TTGGTTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
326 TCAGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
** * * * * *
30629197 AAGATTGGATCGGACTAAGGGTTACGGCAACAGGATCAACAGCACGCAGGGGGGGATGGACCGAT
391 AAGATCAGACCAGACTAAGGGTTACGGCAACAGGATCAACAGCACGCAAGGAGGGATGGACCGAC
** * * * *
30629262 CCCTGGCTTACGCATTCTACCTCTCCGGTCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTAGC
456 CCCCAGCTTACGCATTCTACCTCTCCGCTCGACTAAGCACCCGAACGCTCGTTTCGTGGGTTAGC
* * * *
30629327 TTAGGCATACGGAGTTCATTCCATGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCAGATC
521 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAGTATAAGATCAGACC
* * * * ***
30629392 GGATCGAGGGTTACGGTAGCAGGACCAGCAACAGGATCGACAGCATGTAAGGGGGACCGAGTTGA
586 AGACCGAGGGTTACGGTAGCAGCACCAGCAACAGGATCGACAGCACGTAAGGGGGACCGAGCCAA
* * *
30629457 TCCCCGGCTTGCGCATTATG-C-CTCT-TC-A-GTTGGCTGAGCACCCGCACGCTCGTT-TCGTG
651 TCCCCGGCTTGCGCATTATGCCTCTCTGTCAACGCTGGCTGAGCACCCGCACACTCATTCT-GTG
* *
30629516 GGTTGACTTATGCATAC-AGAGTTCATCCCC-GATCTAAGCATACGGAGTTCATTCACAGTCTAA
715 GGTTAACTTAAGCATACGA-AGTTCATCCCCAG-TCTAAGCATACGGAGTTCATTCACAGTCTAA
* * * * *
30629579 GAT-TGGATCGGACCGAAGGTTGCGGCAGCAGGATCCGTAGCACGTA-GGGGGATCAAGCTGAT-
778 GATCT-AACCAGACCGAAGGTTGCGGCAGCAGGATCAGTAGCACGTAGGGGGGATCAAGCAGATC
* *
30629641 CCTCGACTTACGCATTCTACCTCT-TCGGTCGGCTGAGCACCTGCACG
842 CCT-GACTTACGCA-TCTACCTCTCT-GGCCAGCTGAGCACCTGCACG
* * *
30629688 CTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTC
* * * * * *
30629753 TCAATCTAAGAT-TGAACTG-GACGAAGGGTTACGATAGTAGGATC-AGCAGCACGTAAGGGGGA
66 CCAGTCTAAGATCAG-ACTGAAACG-AGGGTTACGACAGCAGGATCGA-CAGCACGTAAGGGGGA
* * * * *
30629815 CCGGG-TCGATTCTCGGCTTACGCATTCGGCCTCTCCGACCGGTTG-AGCACCCACACGCCCGTT
128 CCGGGAT-GATCCCCGACTTACGCATTCGGCCTCTCCGACCGGCTGAAACACCCACACGCCCGTT
** * *
30629878 TCATGGGTTGGCTTAGGTGTAGAGAGTTCATTCGATGTCTAAGACCCAG-CTAGACCGATGGTTG
192 TCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCCAGTC-AGACCGAGGGTTG
* ** * * *
30629942 TGGCAGCGGGACAGGTAGCACATAGAGGGGGATCGGGCCGATCCCCGGCCTGCGCATTATGCCTC
256 TGGCAACGGGACAGACAGCACACAAAGGGGGATCGAGCCGATCCCCGGCCTGCGCATTATGCCTC
* *
30630007 TTCGGTCAGCTCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
321 TCCGGTCAGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
* ** * ** *
30630072 AGTCTAAGATCAGACCAGA-TCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAGGAGGGATTG
386 AGTCTAAGATCAGACCAGACT-AAGGGTTACGGCAACAGGATCAACAGCACGCAAGGAGGGA-TG
** * * * * * **
30630136 GGTCGGCCCCCAGCTTGCGGATTCTGCCTCTTCGACT-GACTAAGGGCCCGAACAG-TCGTTTCG
449 GACCGACCCCCAGCTTACGCATTCTACCTCTCCG-CTCGACTAAGCACCCGAAC-GCTCGTTTCG
* *
30630199 TGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAGTATAA
512 TGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAGTATAA
* * * *
30630264 GATCAGACCAGACCTAGGTTTACGGTAGCAGCACCAGCAGCAGGATCGACAGCACGTAGGGGGGA
577 GATCAGACCAGACCGAGGGTTACGGTAGCAGCACCAGCAACAGGATCGACAGCACGTAAGGGGGA
* * * *
30630329 CCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCAACCTCTCTGGCTGGCTGAGCGCCC
642 CCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCT-GTCAA-----C--GCTGGCTGAGCACCC
*
30630394 GTACACTCATTCTGTGGGTTAACTTAAGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTT
699 GCACACTCATTCTGTGGGTTAACTTAAGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * *
30630459 CATTCCCAGTCTAAGATCTAACCAGACTGAGGGTTGCGGTAGTAGGATCAGTAGCACGTAGGGGG
764 CATTCACAGTCTAAGATCTAACCAGACCGAAGGTTGCGGCAGCAGGATCAGTAGCACGTAGGGGG
** * *
30630524 GATCGGGCAGATCCCTGACTTACGCATCTACCTCTCTGGCCATCTGAGCACCTGCATG
829 GATCAAGCAGATCCCTGACTTACGCATCTACCTCTCTGGCCAGCTGAGCACCTGCACG
* * * *
30630582 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCGTACGGGGTTCACT
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTAAGCATACGGAGTTCATT
30630646 CCCAGTCTAAGA
65 CCCAGTCTAAGA
30630658 GTTTGAGACA
Statistics
Matches: 808, Mismatches: 132, Indels: 47
0.82 0.13 0.05
Matches are distributed among these distances:
879 2 0.00
880 234 0.29
881 323 0.40
882 3 0.00
883 4 0.00
885 2 0.00
886 1 0.00
893 3 0.00
894 205 0.25
895 28 0.03
896 3 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (886 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACTGAAACGAGGGTTACGACAGCAGGATCGACAGCACGTAAGGGGGACCG
GGATGATCCCCGACTTACGCATTCGGCCTCTCCGACCGGCTGAAACACCCACACGCCCGTTTCAT
GGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCCAGTCAGACCGAGGGTTGTGGCA
ACGGGACAGACAGCACACAAAGGGGGATCGAGCCGATCCCCGGCCTGCGCATTATGCCTCTCCGG
TCAGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
AAGATCAGACCAGACTAAGGGTTACGGCAACAGGATCAACAGCACGCAAGGAGGGATGGACCGAC
CCCCAGCTTACGCATTCTACCTCTCCGCTCGACTAAGCACCCGAACGCTCGTTTCGTGGGTTAGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAGTATAAGATCAGACC
AGACCGAGGGTTACGGTAGCAGCACCAGCAACAGGATCGACAGCACGTAAGGGGGACCGAGCCAA
TCCCCGGCTTGCGCATTATGCCTCTCTGTCAACGCTGGCTGAGCACCCGCACACTCATTCTGTGG
GTTAACTTAAGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGAT
CTAACCAGACCGAAGGTTGCGGCAGCAGGATCAGTAGCACGTAGGGGGGATCAAGCAGATCCCTG
ACTTACGCATCTACCTCTCTGGCCAGCTGAGCACCTGCACG
Found at i:30630458 original size:26 final size:26
Alignment explanation
Indices: 30630418--30630473 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
30630408 TGGGTTAACT
30630418 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* *
30630444 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
30630470 TAAG
1 TAAG
30630474 ATCTAACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:30630643 original size:26 final size:26
Alignment explanation
Indices: 30630607--30630656 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
30630597 GGCTTAGGCA
*
30630607 TACGGAGTTCA-TTCCATGTCTAAGCG
1 TACGGAGTTCACTCCCA-GTCTAAGCG
*
30630633 TACGGGGTTCACTCCCAGTCTAAG
1 TACGGAGTTCACTCCCAGTCTAAG
30630657 AGTTTGAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCACTCCCAGTCTAAGCG
Found at i:30631351 original size:25 final size:26
Alignment explanation
Indices: 30631322--30631373 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
30631312 GTTGACTGAG
30631322 GCATACAAAGTTCA-TCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
30631347 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
30631373 G
1 G
30631374 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:30631802 original size:159 final size:157
Alignment explanation
Indices: 30631347--30631803 Score: 420
Period size: 159 Copynumber: 2.9 Consensus size: 157
30631337 CCCAGTCTAA
* * * *
30631347 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACAGGATCGAGGGTTGCGACAGCAGGATC-AGT
1 GCATACGAA-TTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGTGGCAGCAGGATCGA-T
*
30631411 AGCA--CATAGTGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
64 AGCACGCA-AG-GGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGC
* * *
30631474 GCCCACACGCCCATCTCGTGGGTTGGCTTAG
127 GCCCACACGCTCATCTCGTGGGTTGACGTAG
* * ** * * * * ** * *
30631505 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGTGGGACCGAC
1 GCATA-CGAATTCATTCCCA-GTCTAAGATCGAACAGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * * * ** * *
30631569 AGCACGTAAAGGTGGATCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAACG
64 AGCACG-CAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCG
* *
30631634 CCCGA-ACGCTCATTTTGTGGGTTGACGTAG
128 CCC-ACACGCTCATCTCGTGGGTTGACGTAG
* *
30631664 GCATACAGAATTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAACAGGATCGATA
1 GCATAC-GAATTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * *
30631729 GCACGCAAGGAGGGATCGGGTTGGTCCCCGACTTGTGCATTATACCTCTCCGATCGACTGAGCAC
65 GCACGCAAGG-GGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
30631794 CCACACGCTC
129 CCACACGCTC
30631804 GTTTCATGAG
Statistics
Matches: 226, Mismatches: 62, Indels: 21
0.73 0.20 0.07
Matches are distributed among these distances:
157 3 0.01
158 48 0.21
159 168 0.74
160 6 0.03
161 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGAATTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGTGGCAGCAGGATCGATAG
CACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCC
ACACGCTCATCTCGTGGGTTGACGTAG
Found at i:30632061 original size:26 final size:26
Alignment explanation
Indices: 30632031--30632108 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
30632021 GTTGACTTAG
30632031 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30632057 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30632083 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30632109 CATCAGACCA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30632429 original size:26 final size:25
Alignment explanation
Indices: 30632399--30632450 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
30632389 GTTGGCTTAG
*
30632399 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCC-AGTCTAA
30632425 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
30632450 G
1 G
30632451 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:30633152 original size:26 final size:26
Alignment explanation
Indices: 30633122--30633174 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30633112 GTTGACTTAG
*
30633122 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
** *
30633148 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
30633174 G
1 G
30633175 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:30634969 original size:158 final size:158
Alignment explanation
Indices: 30634676--30635170 Score: 468
Period size: 158 Copynumber: 3.1 Consensus size: 158
30634666 TAAGCGTATA
* * * * * * * * * *
30634676 GAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACAC
1 GAGTTCATT-CCATGTCTAAGACCAGTCCAAACCAAGGGTTGTGGCAGCAGGACCGACAGCACGC
* * * ** * * *
30634740 AGGGGGGACC-GAGTCGAT-CCTCGGCTTGCACATTCTGCCTCTCCGGTAGGTTGAGCGCCCACA
65 AGGGGGGACCGGA-TCGATCCCT-GGCTTGCGCATTATGCCTCTCCTGCCGGCTCAGCGCCCGCA
* * *
30634803 CGCCCGTTTCGTGGGGTGGCTTTGGCATAGG
128 CGCTCGTTTCGTGGGTTGGCTTTGGCATACG
* * **
30634834 GAGTTCATTCCATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGGCAGTGGGACC-AGCAGCACG
1 GAGTTCATTCCATGTCTAAG-ACCAGTCCAAACCAAGGGTTGTGGCAGCAGGACCGA-CAGCACG
* * * * *
30634897 CAGAGGGGGACCTGG-TTGATCCCTGGCTTGTGCATTATGCCTCTTC-GTCGGCTCAGTGCCCGC
64 CAG-GGGGGACC-GGATCGATCCCTGGCTTGCGCATTATGCCTCTCCTGCCGGCTCAGCGCCCGC
*
30634960 ACGCTCGTTTCGTGGGTTGACTTAT-GCATACG
127 ACGCTCGTTTCGTGGGTTGGCTT-TGGCATACG
* * * * * * *
30634992 GAGTTCATTCC-TAGTATGAGATCGGTCCACACCAAGGGTTGTGGCAGCAGGATCGACAGCACGT
1 GAGTTCATTCCAT-GTCTAAGACCAGTCCAAACCAAGGGTTGTGGCAGCAGGACCGACAGCACGC
* * *
30635056 AGGGGGGACCGGATCGATCCCTGGCTTGCGCATTCTTCCTCTCCTGCCGGCTGAGCGCCCGCACG
65 AGGGGGGACCGGATCGATCCCTGGCTTGCGCATTATGCCTCTCCTGCCGGCTCAGCGCCCGCACG
*
30635121 CTCGTTTCGTGGGTTGGCTTAGGCATACG
130 CTCGTTTCGTGGGTTGGCTTTGGCATACG
30635150 GAGTTCATTCCATGTCTAAGA
1 GAGTTCATTCCATGTCTAAGA
30635171 TTACGGAGTT
Statistics
Matches: 274, Mismatches: 48, Indels: 30
0.78 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 40 0.15
158 192 0.70
159 36 0.13
160 3 0.01
161 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGACCAGTCCAAACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCA
GGGGGGACCGGATCGATCCCTGGCTTGCGCATTATGCCTCTCCTGCCGGCTCAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTTGGCATACG
Found at i:30636128 original size:159 final size:159
Alignment explanation
Indices: 30635965--30636368 Score: 420
Period size: 159 Copynumber: 2.5 Consensus size: 159
30635955 CCCAACTTTT
* * **
30635965 GCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGAACGC-CTATTTCGTGGGTTGGCTTAGGCATGG
1 GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATAC
* ** * *
30636029 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGG-AAGCAGGA-CTGGCAGCAC
65 GGAGTTCATTCCATGTCTAAGCCCCAACCAAACTGAGGGTTGTGGCAA-CAGGATC-GACAGCAC
* *
30636092 GCAGAGAGGGATCGGGTCGATCCCCAGCCTGC
128 GCAGAGAGGGACCGGGTCGATCCCCAGCCTAC
* ** * * * * *
30636124 GCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTTGGGGGTTGACTTAGGCATACA
1 GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
** * * * *
30636189 GAGTTCATTCCCA-GTCTAAGATCGAATCAAACTGAGGGTTGTGGCAACAGGATCGACTGCATGC
66 GAGTTCATT-CCATGTCTAAGCCCCAACCAAACTGAGGGTTGTGGCAACAGGATCGACAGCACGC
* * * * *
30636253 AGGGGGGGACCGGGTTGATCCCCGGCTTAC
130 AGAGAGGGACCGGGTCGATCCCCAGCCTAC
* ** * * *
30636283 GCATTCTGCCTCTTCGGCTAGCTGAGCGACCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
30636348 GAGTTCATTCCATGTCTAAGC
66 GAGTTCATTCCATGTCTAAGC
30636369 ATACGAGTTC
Statistics
Matches: 195, Mismatches: 45, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
158 3 0.02
159 185 0.95
160 7 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAACCAAACTGAGGGTTGTGGCAACAGGATCGACAGCACGCA
GAGAGGGACCGGGTCGATCCCCAGCCTAC
Found at i:30636379 original size:25 final size:26
Alignment explanation
Indices: 30636341--30636392 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
30636331 GTTGGCTTAG
30636341 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30636367 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30636392 G
1 G
30636393 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30636749 original size:26 final size:26
Alignment explanation
Indices: 30636719--30636771 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30636709 GTTGACTTAG
30636719 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * * *
30636745 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
30636771 G
1 G
30636772 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:30637121 original size:26 final size:26
Alignment explanation
Indices: 30637092--30637149 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
30637082 GTCTAAGATC
* *
30637092 GGATCGGACTGAGGGTTGCGGTAGCA
1 GGATCGGACCGAGGGTTACGGTAGCA
30637118 GGATCGGACCGAGGGTTACGGTAGCA
1 GGATCGGACCGAGGGTTACGGTAGCA
30637144 GGATCG
1 GGATCG
30637150 ACAGCACGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.21, C:0.17, G:0.45, T:0.17
Consensus pattern (26 bp):
GGATCGGACCGAGGGTTACGGTAGCA
Found at i:30637282 original size:26 final size:26
Alignment explanation
Indices: 30637246--30637298 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30637236 GTTGGCTTAG
30637246 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30637272 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30637298 G
1 G
30637299 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30638204 original size:26 final size:26
Alignment explanation
Indices: 30638167--30638219 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30638157 GTTGACTTAG
30638167 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
30638193 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
30638219 G
1 G
30638220 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30638875 original size:26 final size:26
Alignment explanation
Indices: 30638839--30638891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30638829 GTTGGCATAG
*
30638839 GCATCCAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30638865 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30638891 G
1 G
30638892 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30639923 original size:26 final size:26
Alignment explanation
Indices: 30639893--30639971 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
30639883 GTTGACTTAG
30639893 GCATATGGAGTTCATACCCAGTCTAA
1 GCATATGGAGTTCATACCCAGTCTAA
*
30639919 GCATATGGAGTTCATACCTAGTCTAA
1 GCATATGGAGTTCATACCCAGTCTAA
* *
30639945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATACCCAGTCTAA
30639971 G
1 G
30639972 ATTGGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATACCCAGTCTAA
Found at i:30640451 original size:26 final size:26
Alignment explanation
Indices: 30640421--30640473 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30640411 GTTGGCTTAG
*
30640421 GCATAAGGAGTTCATTCC-ATGTCTAA
1 GCATAAGCAGTTCATTCCTA-GTCTAA
*
30640447 GCATACGCAGTTCATTCCTAGTCTAA
1 GCATAAGCAGTTCATTCCTAGTCTAA
30640473 G
1 G
30640474 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGCAGTTCATTCCTAGTCTAA
Found at i:30641014 original size:25 final size:26
Alignment explanation
Indices: 30640985--30641036 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
30640975 GTTGACTTAG
* * *
30640985 GCATACGGAGTTCA-TCCTAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
30641010 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
30641036 G
1 G
30641037 ATCGGATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:30641517 original size:26 final size:26
Alignment explanation
Indices: 30641487--30641542 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
30641477 TGGGTTGGCT
30641487 TAAGCATACGGAGTTCATTC-CATGTC
1 TAAGCATACGGAGTTCATTCACA-GTC
*
30641513 TAAGCATATGGAGTTCATTCACAGTC
1 TAAGCATACGGAGTTCATTCACAGTC
30641539 TAAG
1 TAAG
30641543 ATCAAACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCACAGTC
Found at i:30641753 original size:25 final size:26
Alignment explanation
Indices: 30641702--30641753 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30641692 TTTGACTTAG
30641702 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30641728 GCATATGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30641753 G
1 G
30641754 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30642795 original size:26 final size:26
Alignment explanation
Indices: 30642765--30642817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30642755 GTTGACTTAG
30642765 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30642791 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30642817 G
1 G
30642818 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30643265 original size:158 final size:158
Alignment explanation
Indices: 30642791--30643292 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 158
30642781 CCCAGTCTAA
* * * *
30642791 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGTAGGATC-AG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGA-
* * ** * *
30642854 CAGCACGCA-GGAGGGATCGGATTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGC
64 CAGCACGCAGGGA-GGACCAGACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGACGGCTGAGC
* * *
30642918 ACCCGCACGCCCATTTCATGGGTTGGCTTAG
128 ACCCGAACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *
30642949 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACTGAGGGTTGTGGCT-GCGGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGG-TAGCAGGATC-G
** * ** * * *
30643011 GTAGCACGCAGAAGG-GGACCAGGCCGATCCCCAACTTGCGCATTATGCCTCTCC-GACTGGCTC
63 ACAGCACGCAG--GGAGGACCAGACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGAC-GGCTG
* * * *
30643074 AACGCCCGAACGCTCATTTCGTGGCTTGACTTAG
125 AGCACCCGAACGCTCATTTCGTGGGTTGGCTTAG
* *
30643108 GCATACGGAGTTCAGTCC-TAGTCTAAGATCAGACCAGACCGAGGCTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * *
30643172 AGAACGTAGGGAGGACCAAACCGGTCCCCGGCTTGTGCATTCTGCCTTTCCGGTCGGCTGAGCAC
65 AGCACGCAGGGAGGACCAGACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGACGGCTGAGCAC
* * *
30643237 CCGTACGCTCGTTTTGTGGGTTGGCTTAG
130 CCGAACGCTCATTTCGTGGGTTGGCTTAG
30643266 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30643293 CATACGGAGT
Statistics
Matches: 267, Mismatches: 61, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 3 0.01
158 143 0.54
159 118 0.44
160 1 0.00
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGAGGACCAGACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGACGGCTGAGCACC
CGAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:30643316 original size:26 final size:26
Alignment explanation
Indices: 30643266--30643318 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30643256 GTTGGCTTAG
**
30643266 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
*
30643292 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
30643318 G
1 G
30643319 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:30643492 original size:26 final size:26
Alignment explanation
Indices: 30643462--30643514 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30643452 GTTGGCCTAG
*
30643462 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
30643488 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30643514 G
1 G
30643515 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30644561 original size:26 final size:26
Alignment explanation
Indices: 30644525--30644577 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30644515 GTTGACTTAG
30644525 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
30644551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30644577 G
1 G
30644578 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30644925 original size:58 final size:58
Alignment explanation
Indices: 30644816--30644926 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 58
30644806 TTGTGCATTA
* ** *
30644816 TGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTTGTGTGTTGACTTAGGTATTC
1 TGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAGGTATTC
* * * * *
30644874 TGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTCATGAGTTGGCTTAGG
1 TGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAGG
30644927 CATACGGAGT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 44 1.00
ACGTcount: A:0.11, C:0.32, G:0.28, T:0.30
Consensus pattern (58 bp):
TGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAGGTATTC
Found at i:30644976 original size:26 final size:26
Alignment explanation
Indices: 30644926--30644977 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30644916 GTTGGCTTAG
* *
30644926 GCATACGGAGTTCATTCCTTATCTAA
1 GCATACGAAGTTCATTCCTCATCTAA
30644952 GCATACGAAGTTCATTCC-CAGTCTAA
1 GCATACGAAGTTCATTCCTCA-TCTAA
30644978 AATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTCATCTAA
Found at i:30645684 original size:26 final size:26
Alignment explanation
Indices: 30645647--30645699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30645637 GTTGACTTAG
*
30645647 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
30645673 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30645699 G
1 G
30645700 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30645979 original size:159 final size:158
Alignment explanation
Indices: 30645673--30646072 Score: 457
Period size: 159 Copynumber: 2.5 Consensus size: 158
30645663 CTCAGTCTAA
* * * * * * *
30645673 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGAGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
30645738 GCACGT--AGGGGGATCAGATCGATCCCCAGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGC
65 GCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTCAGCCC
30645801 CCGCACGCCCGTTTCGTGGGTTGGCCTAG
130 CCGCACGCCCGTTTCGTGGGTTGGCCTAG
* * * *
30645830 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACCGAGGGTTGCGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
** *
30645894 AGCACGTAGAGGGGGATCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGACTGACTCAGCC
64 AGCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTCAGCC
** * *
30645959 CCCGCACGCTGGTTTTGTGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGGCCTAG
** * * **
30645989 GCATACGGAGTTCATTCCAGTCTAAGATTAGATCGGATCGAGGGTTGTGATAGCAGGATCGACAG
1 GCATACGGAGTTCATTCCAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
30646054 CACGTAG-GGGGGATCGGGT
66 CACGTAGAGGGGGATCGGGT
30646073 TGATTCCTTG
Statistics
Matches: 203, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
156 3 0.01
157 67 0.33
158 44 0.22
159 89 0.44
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTCAGCCCC
CGCACGCCCGTTTCGTGGGTTGGCCTAG
Found at i:30646150 original size:157 final size:157
Alignment explanation
Indices: 30645673--30646174 Score: 487
Period size: 157 Copynumber: 3.2 Consensus size: 157
30645663 CTCAGTCTAA
* * * * * * *
30645673 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAAACCAGACTGAGAGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCA-CCAATCGGACCGAGGGTTGCGACAGCAGGATCGA
* * *
30645736 CAGCACGTA-GGGGGATCAGATCGATCCCCAGCTTATGCA-TTCTGCCTCTCCGGCCGGCTGAGC
64 CAGCACGTAGGGGGGATCGGGTCGATCCCTAGC-T-TGCACTTCTGCCTCTCCGGCCGGCTGAGC
* * *
30645799 GCCCGCACGCCCGTTTCGTGGGTTGGCCTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
30645830 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGCGGCAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAATCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
30645895 GCACGTAGAGGGGGATCGGGTCGATCCCTGGCTTACGCA-TTATGCCTCTCCGACTGACTCAGCC
66 GCACGTAG-GGGGGATCGGGTCGATCCCTAGCTT--GCACTTCTGCCTCTCCGGCCGGCTGAGCA
* *
30645959 CCCGCACGCTGGTTTTGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
30645989 GCATACGGAGTTCATTCCA-GTCTAAG-ATTAGATCGGATCGAGGGTTGTGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCA-ATCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
30646052 AGCACGTAGGGGGGATCGGGTTGATTCCTTGCTTGCACGTTCTGCCTTTTCGGCCGGCTGAGCAC
65 AGCACGTAGGGGGGATCGGGTCGATCCCTAGCTTGCAC-TTCTGCCTCTCCGGCCGGCTGAGCAC
* * * *
30646117 CCACACGCTCATTTCATGCGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
30646146 GCATACAGTGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
30646175 TATGGAGTTC
Statistics
Matches: 281, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 139 0.49
158 50 0.18
159 86 0.31
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAATCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGGGGGGATCGGGTCGATCCCTAGCTTGCACTTCTGCCTCTCCGGCCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30646176 original size:26 final size:26
Alignment explanation
Indices: 30646146--30646198 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30646136 GTTGGCTTAG
*
30646146 GCATACAGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
30646172 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30646198 G
1 G
30646199 TTTTTGAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30647087 original size:26 final size:26
Alignment explanation
Indices: 30647050--30647102 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30647040 GATGGCTTAG
30647050 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * * *
30647076 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
30647102 G
1 G
30647103 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30647103 original size:184 final size:184
Alignment explanation
Indices: 30646793--30647248 Score: 517
Period size: 184 Copynumber: 2.5 Consensus size: 184
30646783 ACCACTCGTT
* * * *
30646793 CGATCCCCGGCTTGCGCA-TCTTGCCTCTTTGGTCGGCCGAGCGCCCGCACGCTCATTTCGTGGG
1 CGATCCCCGGCTTGCGCATTC-TGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
* * * *
30646857 TTGACTTAGGCATAC-AGACTTCATCCCCAGTATAAGCATATGGAGTTCATTCCCAGTCTAAGAT
65 TTGGCTTAGGCATACGA-AGTTCATCCCCAATATAAGCATACGGAGTTCATTCCCAGTCTAAGAT
*** * * *
30646921 CAAACCAGATTGAGGGTTGCGGTAGCAAGATCGACAGCACGTAGGAGGGAC-CGGAC
129 CAAACCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGAGGGACTAGG-C
* * * * *
30646977 TGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGTTCGTTTCGTGGGA
1 CGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * *
30647042 TGGCTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCG
66 TGGCTTAGGCATACGAAGTTCATCCCCAATATAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
30647107 GACCAGACCAAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACTAGGC
131 AACCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGAGGGACTAGGC
* * * ** * * * *
30647161 CGCA-CCCCGGCTTGCACATTTTGCCTTTTCGACCGGGTGAGCACCCGCATGCCCGTTTCATGGG
1 CG-ATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
30647225 TTGGCTTAGGCATAGCG-AGTTCAT
65 TTGGCTTAGGCATA-CGAAGTTCAT
30647249 TCCATGTCTA
Statistics
Matches: 227, Mismatches: 40, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
184 219 0.96
185 8 0.04
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGAAGTTCATCCCCAATATAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
AACCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGAGGGACTAGGC
Found at i:30647302 original size:158 final size:157
Alignment explanation
Indices: 30647076--30647605 Score: 512
Period size: 158 Copynumber: 3.3 Consensus size: 157
30647066 CCCAATCTAA
* * * * * * * *
30647076 GCATACGGAGTTTATTCCCA-GTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAG-CCGGACCGAGGGTTGTGGCAGCAGGATAGAC
* * * * * * *
30647140 AGCACGCAGGGGGGACTAGGCCGCA-CCCCGGCTTGCACATTTTGCCTTTTCGACCGGGTGAGCA
64 AGCACACAGGGGGGACTGGGCCG-ATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGGTCAGCG
* * *
30647204 CCCGCATGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * **
30647234 GCATA-GCGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGTGGGACTAG-
1 GCATACG-GAGTTCATTCCATGTCTAAG-ACCAGCCGGACCGAGGGTTGTGGCAGCAGGA-TAGA
* * * *
30647297 CAGCACACAGAGGGAGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGTCCGGGTCAGC
63 CAGCACACAG-GGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGGTCAGC
* * *
30647362 GCCCGCACGTTTGTTTCATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
30647393 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAG-CCGGACCGAGGGTTGTGGCAGCAGGATAGAC
* * * * * * * ** *
30647457 AGCACCCAGGGGGGACTGGGCCAATCCCCAGTTTGCGCATTCTGCCTCTCCGATCGACTTAGCGC
64 AGCACACAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGGTCAGCGC
*
30647522 CCGCACGCTCGTTTCATGGGTTGATTTAG
129 CCGCACGCTCGTTTCATGGGTTGACTTAG
* *
30647551 GCATACGGAGTTCATTCCATGTCTAAGTACCAGTCAGACCGAGGGTTGTGGCAGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGCCGGACCGAGGGTTGTGGCAGC
30647606 CGGACCGGCA
Statistics
Matches: 300, Mismatches: 60, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.02
158 164 0.55
159 125 0.42
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGCCGGACCGAGGGTTGTGGCAGCAGGATAGACAG
CACACAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGGTCAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAG
Found at i:30647985 original size:158 final size:158
Alignment explanation
Indices: 30647721--30648015 Score: 385
Period size: 158 Copynumber: 1.9 Consensus size: 158
30647711 CAAGATCGAC
* * * *** *
30647721 AGCACGCAGAGGGGATCAGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGTTGTATGAGCGC
1 AGCACGCAGAGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGCGC
* * * * *
30647786 CCGCACTCCCGTTTCGTCGGTTGGCTTAGGCATAGGTAGTTCATTCCAAGTCTAAGCTCCAGTCA
66 CCACACGCCCGTTTCATCGGTTGGCTTAGGCATAGGTAGTTCATTCCAAGTCTAAGCCCCAGCCA
30647851 GAACGAGGGATGCGGCAGTAGGATCGGT
131 GAACGAGGGATGCGGCAGTAGGATCGGT
* * * * *
30647879 AGCACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
1 AGCACGCAGAGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGCGC
* * *
30647944 CCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCCAGCC
66 CCACACGCCCGTTTCATCGGTTGGCTTAGGCATA-GGTAGTTCATTCCAAGTCTAAGCCCCAGCC
*
30648008 AGACCGAG
130 AGAACGAG
30648016 TGTTGTGGTA
Statistics
Matches: 115, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
158 113 0.98
159 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
AGCACGCAGAGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGCGC
CCACACGCCCGTTTCATCGGTTGGCTTAGGCATAGGTAGTTCATTCCAAGTCTAAGCCCCAGCCA
GAACGAGGGATGCGGCAGTAGGATCGGT
Found at i:30648173 original size:26 final size:26
Alignment explanation
Indices: 30648143--30648195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30648133 GTTGACTTAG
30648143 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
30648169 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30648195 G
1 G
30648196 ATTGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30648362 original size:26 final size:26
Alignment explanation
Indices: 30648326--30648404 Score: 117
Period size: 26 Copynumber: 3.0 Consensus size: 26
30648316 GTTGGCTTAG
30648326 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30648352 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
30648378 GCATATGGA-TTGCATTCCCA-GTCTAA
1 GCATACGGAGTT-CATT-CCATGTCTAA
30648404 G
1 G
30648405 ATTTTGAGCC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 45 0.90
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30649112 original size:26 final size:26
Alignment explanation
Indices: 30649076--30649126 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30649066 TTGACTTAGG
*
30649076 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCACAGTCTAAA
* *
30649102 CATATGGAGTTCATTCACAGTCTAA
1 CATACGGAGTTCATCCACAGTCTAA
30649127 GATCGGAACG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCACAGTCTAAA
Found at i:30649289 original size:26 final size:25
Alignment explanation
Indices: 30649259--30649310 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
30649249 GTCGACTTTG
*
30649259 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCA-GTCTAA
30649285 GCATATAGAGTTCATTCCAGTCTAA
1 GCATATAGAGTTCATTCCAGTCTAA
30649310 G
1 G
30649311 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
GCATATAGAGTTCATTCCAGTCTAA
Found at i:30649661 original size:26 final size:26
Alignment explanation
Indices: 30649625--30649677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30649615 GTTTACTTAG
30649625 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30649651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30649677 G
1 G
30649678 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30649837 original size:355 final size:359
Alignment explanation
Indices: 30649396--30650227 Score: 1014
Period size: 368 Copynumber: 2.3 Consensus size: 359
30649386 CTCGATTTAT
* * ** * *
30649396 GCATTCTACCTCTTCGATCGATTGAGCGCCTACACGCTCATTTCATGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGATCGGCTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
* * * *
30649461 AAGTTCATTCCATGTCTAAGCCCCAGTCAGACCTAGGGTTGTGGTAGCAGGACCGGCAACGGGAT
66 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGAAGCAAGACCGGCAACGGGAT
* *
30649526 CGACAGCACGCAGAGGGGGACCGGGCTAATCCCTAG-CTTACGCATTATGCCTCT-CC-G-A-TC
131 CAACAGCACACAGAGGGGGACCGGGCTAATCCC-AGACTTACGCATTATGCCTCTACCGGCAGTC
** * * *
30649586 GGCTGAGCACCCGCACGCTTGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATCCCCAGTCTAA
195 GGCTGAGCACCCGCACGCTCATTTCGTGCGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAA
*
30649651 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CAGAGGGTTGCGACAGCAGGATCGAC
260 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTGCGACAGCAAGATCGAC
* *
30649715 AGTACGCAGGGGGGATCGAGCT-GATCCCCTGCTTGC
324 AGCACGCAGGGGGGATCG-GCTCGATCCCCAGCTTGC
* * * * *
30649751 GTATTCTGCCTCTCCGATCGGCTGAGCACCTGCATGCTCGTTTGATGGGTTGGATTAGGCATACG
1 GCATTCTGCCTCTCCGATCGGCTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
* * *
30649816 GAGTCCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGAAGCAAGACTGGCAGCGGGAT
66 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGAAGCAAGACCGGCAACGGGAT
* ** * * *
30649881 CAATAGCACACAGAGGGGGGTCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCAACCGGCCT
131 CAACAGCACACAGAGGGGGACCGGGCTAATCCCAGACTTACGCATTATGCCTCT---ACCGG---
* *** *
30649946 TTCCAGTCGGTTGAGTGTCCGCACGCTCATTTTGTGCGTTGACTTAGGCATACGAAGTTCATCCC
190 ---CAGTCGGCTGAGCACCCGCACGCTCATTTCGTGCGTTGACTTAGGCATACGAAGTTCATCCC
*
30650011 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAA
252 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAA
* ** *
30650076 GATCGACAGCATGTTGGGGGGATCGGGTCGATCCCCAGCTTGC
317 GATCGACAGCACGCAGGGGGGATCGGCTCGATCCCCAGCTTGC
* * * * *
30650119 GCATTCTGCCTCTCCGACCGGCTGAG-AGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAA
1 GCATTCTGCCTCTCCGATCGGCTGAGCA-CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
* * * *
30650183 GGAGTTCATTCCATGTCTACGCCCCAGCCGGACCGAAGGTTGTGG
65 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGG
30650228 CAGTGGGACC
Statistics
Matches: 401, Mismatches: 59, Indels: 21
0.83 0.12 0.04
Matches are distributed among these distances:
354 1 0.00
355 156 0.39
359 2 0.00
360 1 0.00
367 4 0.01
368 236 0.59
369 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (359 bp):
GCATTCTGCCTCTCCGATCGGCTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGAAGCAAGACCGGCAACGGGAT
CAACAGCACACAGAGGGGGACCGGGCTAATCCCAGACTTACGCATTATGCCTCTACCGGCAGTCG
GCTGAGCACCCGCACGCTCATTTCGTGCGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAAGATCGACAG
CACGCAGGGGGGATCGGCTCGATCCCCAGCTTGC
Found at i:30650472 original size:157 final size:156
Alignment explanation
Indices: 30650026--30650510 Score: 472
Period size: 159 Copynumber: 3.1 Consensus size: 156
30650016 TAAGCATATG
* * * * * *
30650026 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAAGATCGACAGCATGTT
1 GAGTTCATTCCCAGTCTAAGATC-GAACCGAACGAGGGTTGCGACAGCAGGATCGACAGCACGTA
* *
30650091 GGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGTACGC
65 GGGGGGACCGGGTCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGTATGC
* * *
30650156 CCATTTCATGGGTTGGCTTAGGCATA-A
129 TCGTTTCGTGGGTTGGCTTAGGCATACA
* ** * * * * * * ** * *
30650183 GGAGTTCATT-CCATGTCTACGCCCCAGCCGGACCGAAGGTTGTGGCAGTGGGACCGATAGCACG
1 -GAGTTCATTCCCA-GTCTAAGATCGAACC-GAACGAGGGTTGCGACAGCAGGATCGACAGCACG
* * * * * * * *
30650247 TAGAGGGGGACTGGGTCGATCACCGGCTTGCGCATTATACCTCTTCGGCCGGCTCAGTGCCCGTA
63 TAG-GGGGGACCGGGTCGATC-CCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGTA
* * *
30650312 TGCTTGTTTCGTGGGTTGACTTATGCATACA
126 TGCTCGTTTCGTGGGTTGGCTTAGGCATACA
* *
30650343 GAGTTCATTCCCAGTCTAAGATCGAACTGAACTGAGGGTTG-GACAGCAGGATTGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCGAACCGAAC-GAGGGTTGCGACAGCAGGATCGACAGCACGTA
* * * * * *
30650407 GGGGGGACCAGGTCGATGCTCAGCTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCGCATGC
65 GGGGGGACCGGGTCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGTATGC
*
30650472 TCGTTTCGTGGGTTGGCTTAGGCATACG
129 TCGTTTCGTGGGTTGGCTTAGGCATACA
30650500 GAGTTCATTCC
1 GAGTTCATTCC
30650511 ATGCCTAAGC
Statistics
Matches: 255, Mismatches: 64, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 89 0.35
158 65 0.25
159 97 0.38
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCGAACGAGGGTTGCGACAGCAGGATCGACAGCACGTAG
GGGGGACCGGGTCGATCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGTATGCTC
GTTTCGTGGGTTGGCTTAGGCATACA
Found at i:30651248 original size:26 final size:26
Alignment explanation
Indices: 30651218--30651296 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
30651208 GTTAACTTAG
30651218 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
30651244 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
30651270 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
30651296 G
1 G
30651297 ATCAGACCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:30651762 original size:26 final size:26
Alignment explanation
Indices: 30651725--30651803 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
30651715 GTTGGCTTAG
*
30651725 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30651751 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
30651777 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
30651803 G
1 G
30651804 ATTTTAAGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30652786 original size:159 final size:156
Alignment explanation
Indices: 30652547--30652999 Score: 490
Period size: 156 Copynumber: 2.9 Consensus size: 156
30652537 TGAGGGTTAC
* * * * * * * *
30652547 GACAGCAGAATCGACAGCACGCAG-GAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT
1 GACAGCAGGATCGACAGCACGAAGAGGGGGACCGAGCCAATCCCTGGCTTGTGCATTCTGCCTCT
* * * * *
30652611 CCGATCGACTGAGCGCCTGCACCCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
66 CCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
*
30652676 GTCTAAGCCCCAG-CAAGACCGAGGGTT
131 GTCTAAGCACCAGACAA-ACCGAGGG-T
** *
30652703 G-TGGCAATGGGA-CTGGCAGCAC-ATAGAGGGGGACCGAGCCAATCCCTGGCTTGTGCATTCTG
1 GACAGC-A--GGATC-GACAGCACGA-AGAGGGGGACCGAGCCAATCCCTGGCTTGTGCATTCTG
* * *
30652765 CCTTTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
61 CCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* *
30652830 TCCCA-ATCTAAG-ATCAGACCAAACCGAGGGT
126 T-CCATGTCTAAGCACCAGA-CAAACCGAGGGT
* * * ** *
30652861 GACAGCAGGATCGATAGCACGAAGAGGGGGATCGGGCTGATCCTTCGG-TTGTGCATTCTGCCTC
1 GACAGCAGGATCGACAGCACGAAGAGGGGGACCGAGCCAATCCCT-GGCTTGTGCATTCTGCCTC
* *
30652925 TCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
65 TCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
30652990 TGTCTAAGCA
130 TGTCTAAGCA
30653000 TACGGAGTTG
Statistics
Matches: 245, Mismatches: 37, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
155 5 0.02
156 108 0.44
157 6 0.02
158 17 0.07
159 103 0.42
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GACAGCAGGATCGACAGCACGAAGAGGGGGACCGAGCCAATCCCTGGCTTGTGCATTCTGCCTCT
CCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCACCAGACAAACCGAGGGT
Found at i:30652950 original size:156 final size:157
Alignment explanation
Indices: 30652498--30652988 Score: 518
Period size: 159 Copynumber: 3.1 Consensus size: 157
30652488 CCCAGTCTAA
* * * * *
30652498 GCATACGAAGTTCATTTCCAATCTAAGATCAGACCGAACTGAGGGTTACGACAGCAGAATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTT--GACAGCAGGATCGACA
* * * * *
30652563 GCACGCAG-GAGGGACCGGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCG
64 GCACGAAGAGGGGGACCGGGCT-GATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
* * *
30652626 CCTGCACCCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** **
30652656 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG--CAAGACCGAGGGTTG-TGGCAATGGGA-C
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAA-ACCGAGGGTTGACAGC-A--GGATC
* * ** *
30652716 TGGCAGCAC-ATAGAGGGGGACCGAGCCAATCC-CTGGCTTGTGCATTCTGCCTTTCCGATCGGC
60 -GACAGCACGA-AGAGGGGGACCGGGCTGATCCTC-GGCTTGTGCATTCTGCCTCTCCGATCGGC
* *
30652779 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
122 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
30652815 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGG-TGACAGCAGGATCGATAGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGACAGCAGGATCGACAGC
* *
30652879 ACGAAGAGGGGGATCGGGCTGATCCTTCGG-TTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 ACGAAGAGGGGGACCGGGCTGATCC-TCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCC
*
30652943 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
30652971 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
30652989 ATGTCTAAGC
Statistics
Matches: 273, Mismatches: 41, Indels: 40
0.77 0.12 0.11
Matches are distributed among these distances:
155 2 0.01
156 103 0.38
157 10 0.04
158 48 0.18
159 104 0.38
160 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGACAGCAGGATCGACAGC
ACGAAGAGGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30653001 original size:26 final size:26
Alignment explanation
Indices: 30652971--30653023 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30652961 GTTGGCTTAG
30652971 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30652997 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30653023 G
1 G
30653024 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30654020 original size:158 final size:157
Alignment explanation
Indices: 30653789--30654218 Score: 411
Period size: 156 Copynumber: 2.7 Consensus size: 157
30653779 GGCAGCACGC
* * * ** * ** *
30653789 AGGA-GGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCAACTGAGTGCCTGCAC
1 AGGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCAC
* * * * * *
30653853 CCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCG
66 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCA-AACG
* * * * *
30653917 AGGGTTGTGGCAGCGGGACCGACAGCATGT
130 AAGG--GTGACAACAGGACCGACAGCATGA
* * * * * ** *
30653947 A-GAGGGGACCGGGCCGATCCCTGGCTTGGGCATTCTGCCTTTCCGGTTGGTTGAGCGCCCGCAC
1 AGGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCAC
* *** *
30654011 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCAAACT
66 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACG
* *
30654074 AAGGGTGACAACAGGATCGATAGCATGA
130 AAGGGTGACAACAGGACCGACAGCATGA
* * * * *
30654102 AGGGGGGGACTGGGTCGATCCCCGGGTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCAT
1 AGGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCAC
* *
30654167 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCA
66 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30654219 TACGGAGTTC
Statistics
Matches: 219, Mismatches: 47, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
155 21 0.10
156 94 0.43
157 9 0.04
158 92 0.42
159 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCAC
GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACGA
AGGGTGACAACAGGACCGACAGCATGA
Found at i:30654942 original size:26 final size:26
Alignment explanation
Indices: 30654913--30654965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30654903 GTTGACTTAG
* *
30654913 GCATATGAAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
30654939 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30654965 G
1 G
30654966 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30655240 original size:159 final size:158
Alignment explanation
Indices: 30655002--30655443 Score: 448
Period size: 159 Copynumber: 2.8 Consensus size: 158
30654992 GTAAGATCGG
* * * * *
30655002 CAGCACGCAGGAGGGACCAGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-CTGGTTGAGC
1 CAGCACGCAGGGGGGATCAGATCGAT-CCTCGCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGC
* * * *
30655066 CCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCA-A
64 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCACCAGA
* **
30655130 CCGAACTGAAGGTTGTGGCAGC-GAGACCGA
129 CCGAACCGAAGGTTGCAGCAGCAG-GACCGA
* * *
30655160 CAGCACGCAGAGGGGGATCAGATCGATCCTCAGCTTGCGTATTATGCCTCTCCGATCGGCTCAGC
1 CAGCACGCAG-GGGGGATCAGATCGATCCTC-GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * * *
30655225 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT-GCAGAGTTCATTCCCA-GTCTAAG-ATCA
64 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATT-CCATGTTTAAGCACCA
* * *
30655287 GACCGAACCGAGGGTTGCAGTAGCAGGATCGA
127 GACCGAACCGAAGGTTGCAGCAGCAGGACCGA
* * * * ** * *
30655319 TAGCACGCAGGGGGGGATCGGGTCGGTCCTCGACTTATGCATTCTGCCTCTCCGGTCGACTGAGC
1 CAGCACGCA-GGGGGGATCAGATCGATCCTCG-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * *
30655384 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAT-TTCTAAGCA
64 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTT-TAAGCA
30655444 TACGGAGTTC
Statistics
Matches: 232, Mismatches: 39, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
158 21 0.09
159 204 0.88
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CAGCACGCAGGGGGGATCAGATCGATCCTCGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCACCAGACC
GAACCGAAGGTTGCAGCAGCAGGACCGA
Found at i:30655465 original size:26 final size:26
Alignment explanation
Indices: 30655415--30655467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30655405 GTTGGCTTAG
* *
30655415 GCATATGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30655441 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
30655467 G
1 G
30655468 ATTGGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30655680 original size:12 final size:12
Alignment explanation
Indices: 30655663--30655690 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
30655653 GGGTTGTGGC
30655663 AGCAGGATCGGT
1 AGCAGGATCGGT
30655675 AGCAGGATCGGT
1 AGCAGGATCGGT
30655687 AGCA
1 AGCA
30655691 CGCAGAGGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.39, T:0.14
Consensus pattern (12 bp):
AGCAGGATCGGT
Found at i:30655812 original size:26 final size:26
Alignment explanation
Indices: 30655782--30655834 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30655772 GTTGACTTAG
*
30655782 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
*
30655808 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
30655834 G
1 G
30655835 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:30656149 original size:354 final size:355
Alignment explanation
Indices: 30655304--30656372 Score: 1087
Period size: 354 Copynumber: 3.0 Consensus size: 355
30655294 CCGAGGGTTG
* * * * * * * * **
30655304 CAGTAGCAGGATCGATAGCACGCAGGGGGGGATCG-GGTCGGTCCTCGACTTATGCATTCTGCCT
1 CAGTAGCAGGATCGACAGCACACAGAGAGGGATCGAGCT-GATCCCCGACTTGTGCATAATGCCT
* * * * * * * *
30655368 CTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT-TC
65 CTCCGATCGGCTGAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
* **
30655432 CATTTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGG-TTTGAATCGAGGGTTGCAGCAGT
130 CA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAAT-GAGGGTT---GC---
* * * * * * *
30655496 AGGACCAGCAGCAGGATTGGTAGCACGCAGAGGGGATCGGACCGATCCCCGACTTACGCATTCTA
187 -GG--CAGC-G-AGGATTGGCAGCACGCAG-GGGGACCGGGCTGATCCCTGACTTGCGCATTCTG
* * * * * * * * * *
30655561 CCTTTTCGGCCGGTTGAGCGCCCGTACGCTCGTTTTGTAGGTTGGCTTAGGCATACGTAGTTCAT
246 CCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATAGGAAGTTCAT
* *
30655626 TCCATGTCTAAGCTCC-AGTC-GCATCAAGGGTTGTGGCAGCAGGAT
311 TCCATGTCTAAGC-CCTAGTCAG-ATCAAGGATTGTGGCAGCAGGAC
* ** * * * *
30655671 CGGTAGCAGGATCGGTAGCACGCAGAGGGGGATCGAGTTGATCCCTGACTTGTGCATAATGCCTC
1 CAGTAGCAGGATCGACAGCACACAGAGAGGGATCGAGCTGATCCCCGACTTGTGCATAATGCCTC
* * * * *
30655736 TCCGGTCGGCTGAGCACCTGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
66 TCCGATCGGCTGAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * *
30655801 AGTCTAAGCATACGGAGGTCATTCCCAGTCTAAGATTGGATCGGAGTGAGGGTTGCGGCAGCGA-
131 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAATGAGGGTTGCGGCAGCGAG
** *
30655865 GATCAGCAGCATGCAGGGGGACCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCT
196 GATTGGCAGCACGCAGGGGGACCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCT
* *
30655930 GAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAAGGAAGTTCATTCCATGTCTAAGCC
261 GAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCAT-AGGAAGTTCATTCCATGTCTAAGCC
* *
30655995 CTAGTCAGATCAATGATTGTGGCAGTAGGAC
325 CTAGTCAGATCAAGGATTGTGGCAGCAGGAC
** *
30656026 CAGTAGTGGGATCGACAGCACACAGAGAGGGATC-AGGCTGATCCCCGACTTGT-CATTATGCCT
1 CAGTAGCAGGATCGACAGCACACAGAGAGGGATCGA-GCTGATCCCCGACTTGTGCATAATGCCT
* *** *
30656089 CTCCGATCGGCTTAGCGGTTGTACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
65 CTCCGATCGGCTGAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
* * * * * *
30656154 CAGTCTAAGCATATGGACTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGGCAG-TA
130 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAATGAGGGTTGCGGCAGCGA
* * *
30656218 GGATTGGCAGCACCCAGGGGGGACCGAGCTGAT-CCTCGACTTGCGCATTCTGCCTCTCCGATCG
195 GGATTGGCAGCACGCA-GGGGGACCGGGCTGATCCCT-GACTTGCGCATTCTGCCTCTCCGACCG
* * * * *
30656282 ACTGAGCACCCACACGCCCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
258 GCTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAG
* * * *
30656347 CCCTAGCCAGACCGAGGTTTGTGGCA
323 CCCTAGTCAGATCAAGGATTGTGGCA
30656373 ACGAGACCGA
Statistics
Matches: 598, Mismatches: 94, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
353 1 0.00
354 251 0.42
355 176 0.29
356 2 0.00
357 1 0.00
358 4 0.01
360 2 0.00
364 2 0.00
367 150 0.25
368 9 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (355 bp):
CAGTAGCAGGATCGACAGCACACAGAGAGGGATCGAGCTGATCCCCGACTTGTGCATAATGCCTC
TCCGATCGGCTGAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAATGAGGGTTGCGGCAGCGAG
GATTGGCAGCACGCAGGGGGACCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCT
GAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCC
TAGTCAGATCAAGGATTGTGGCAGCAGGAC
Found at i:30656165 original size:26 final size:26
Alignment explanation
Indices: 30656136--30656188 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30656126 GTTGACTTAG
*
30656136 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
30656162 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
30656188 G
1 G
30656189 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:30656668 original size:26 final size:25
Alignment explanation
Indices: 30656632--30656683 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
30656622 TGGCTTTTAG
*
30656632 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAT-TCTAA
30656658 GCATACAGAGTTCATTCCATTCTAA
1 GCATACAGAGTTCATTCCATTCTAA
30656683 G
1 G
30656684 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCATTCTAA
Found at i:30656977 original size:496 final size:497
Alignment explanation
Indices: 30656111--30657201 Score: 1378
Period size: 496 Copynumber: 2.2 Consensus size: 497
30656101 TAGCGGTTGT
* * * * ** *
30656111 ACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGACTTC
1 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTC
* * * *
30656175 ATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGGCAGTAGGATTGGCAGCACCCAGGGGGG
65 ATTCCCAATCTAAGATCGAATCGGACTGAGGGTTACGGCAGTAGGATCGGCAGCACCCAGGGGGG
30656240 ACCGAGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCCCATTT
130 ACCGAGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCCCATTT
* * * *
30656305 TATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGTTTGTG
195 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATG
* *
30656370 GCAACGAGACCGATAGCACGCAGAGGGGGACCGAGCCGATCATCGACTTGCGCATTATGCCTCTC
260 GCAACGAGACCGACAGCACACAGAGGGGGACCGAGCCGATCATCGACTTGCGCATTATGCCTCTC
* * * * *
30656435 TGGCTGGCTCAACGTCGGAATGCTCATTTCGTGGGTTGTCTTAGGCATATGGAGCTCATTCCCAA
325 CGGCTGGCTCAACGCCCGAACGCTCATTTCGTGGGTTGTCTTAGGCATACGGAGCTCATTCCCAA
* * * * **
30656500 TTTAAG-ATCAGATCGAAGATTGCGACAGTAGGATCGACAGCACGCA-GGGGG-ATCGGGCCGAT
390 TCTAAGAAT-AGACCGAAGATTGCGACAGCAGGATCGACAGCACGCAGGGGGGAACCAAGCCGAT
* **
30656562 CCCTGGCTTGCGCATTCTACCTCTCC-GACTGACTGAGCA-CCGC
454 CCCCGGCTTGCGCATTCTACCTCTCCAG-CCAACTGAGCACCCGC
*
30656605 ACGCTCATTTTATGGGTTGGCTTTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTT
1 ACGCTCATTTCATGGGTTGGC--TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTT
* * *
30656670 CATT-CCATTCTAAGATCGAATCGGA-TCGAGGGTTACGGCAGTAGGATCGGTAGCACGCAGGGG
64 CATTCCCAATCTAAGATCGAATCGGACT-GAGGGTTACGGCAGTAGGATCGGCAGCACCCAGGGG
** * * * * ** * *
30656733 GGATTG-GGTCGATCC-CTACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCCCG
128 GGACCGAGCT-GATCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCCCA
* * *
30656796 TTTCATGGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GAACTGAGGGT
192 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGGGT
* * * *
30656860 TATGGCGATGAAGACCGGACAGCACACAGAGGGGGACCGAGCCGATCA-CTGGCTTGCGTATTAT
256 TATGGCAACG-AGACC-GACAGCACACAGAGGGGGACCGAGCCGATCATC-GACTTGCGCATTAT
* * * *
30656924 GCCTCTCCGGCTGGCTCAGCGCCCGAACGCTCGTTTCGTGGTTTGTTTTAGGCATACGGAGCTCA
318 GCCTCTCCGGCTGGCTCAACGCCCGAACGCTCATTTCGTGGGTTGTCTTAGGCATACGGAGCTCA
* * * * **
30656989 TTCCCAGTCTAAGAATGGACCGAGGATTGTGGTAGCAGGATCGACAGCACGCAGGGGGGAACCAA
383 TTCCCAATCTAAGAATAGACCGAAGATTGCGACAGCAGGATCGACAGCACGCAGGGGGGAACCAA
** *
30657054 GTTGATCCCCGGCTTGTGCATTCTACCTCTCCAGCCAACTGAGCACCCGC
448 GCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCAACTGAGCACCCGC
* *
30657104 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
1 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
* *
30657169 TTCCCAATCTAAGATCGAACCGGACTAAGGGTT
66 TTCCCAATCTAAGATCGAATCGGACTGAGGGTT
30657202 GCGGTAGCAG
Statistics
Matches: 511, Mismatches: 70, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
493 1 0.00
494 124 0.24
495 69 0.14
496 176 0.34
497 53 0.10
498 64 0.13
499 24 0.05
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (497 bp):
ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TTCCCAATCTAAGATCGAATCGGACTGAGGGTTACGGCAGTAGGATCGGCAGCACCCAGGGGGGA
CCGAGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCCCATTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGG
CAACGAGACCGACAGCACACAGAGGGGGACCGAGCCGATCATCGACTTGCGCATTATGCCTCTCC
GGCTGGCTCAACGCCCGAACGCTCATTTCGTGGGTTGTCTTAGGCATACGGAGCTCATTCCCAAT
CTAAGAATAGACCGAAGATTGCGACAGCAGGATCGACAGCACGCAGGGGGGAACCAAGCCGATCC
CCGGCTTGCGCATTCTACCTCTCCAGCCAACTGAGCACCCGC
Found at i:30657179 original size:26 final size:26
Alignment explanation
Indices: 30657129--30657181 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30657119 GTTGGCTTAG
* *
30657129 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
30657155 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
30657181 G
1 G
30657182 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:30657373 original size:26 final size:26
Alignment explanation
Indices: 30657337--30657389 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30657327 GTTGACTTAG
30657337 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30657363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30657389 G
1 G
30657390 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30657592 original size:26 final size:26
Alignment explanation
Indices: 30657556--30657608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30657546 GTTGGCTTAG
30657556 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
30657582 GCATATGGAGTTCATTCGATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30657608 G
1 G
30657609 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30658313 original size:25 final size:26
Alignment explanation
Indices: 30658277--30658328 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
30658267 GTTGACTTAG
30658277 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
30658302 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
30658328 G
1 G
30658329 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 12 0.50
26 11 0.46
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30658806 original size:26 final size:26
Alignment explanation
Indices: 30658777--30658829 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30658767 GTTGGCTTAG
30658777 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30658803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30658829 G
1 G
30658830 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30659130 original size:170 final size:170
Alignment explanation
Indices: 30658804--30659170 Score: 388
Period size: 170 Copynumber: 2.2 Consensus size: 170
30658794 CATGTCTAAG
* * * * *
30658804 CATACGGAGTTCATTCCCAGTCTAAG--ATCGGACCGGATCGAGGGTTATGGCAGCAGGACCAGC
1 CATACGGAGTTCATCCCCAGTCTAAGCCCTAGG--CGGACCGAGGGTTATGGCAACAGGACCAGC
* * * * * * *
30658867 AGCAAGGTCGACAGCACGTGAGGGGGACCGGGTCGATCCTCGGCTTGCACATTCTGCCTTTCTGA
64 AGCAAGATCGACAGCACGTGAGGGGGACCGGCTCAATCCTCGGCTTCCACATTATGCCTTCCAGA
* * *
30658932 CCGGTTAAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGG
129 CCGGCTAAGCACCCGCACACTCGTTTCATGGGTTGACTTAGA
* * * *
30658974 CATATGGAGTTCAT-TCCATGTCTAAGCCCTAGGCGGACCGAGGGTTGTGGCAATAGGACC-GAC
1 CATACGGAGTTCATCCCCA-GTCTAAGCCCTAGGCGGACCGAGGGTTATGGCAACAGGACCAG-C
* *
30659037 AGCGAGATCG-CAGCACGTAGAGGGGGATCTGGCT-AATCCTCGGCTTCCACATTATGCCTCTCC
64 AGCAAGATCGACAGCACGT-GAGGGGGA-CCGGCTCAATCCTCGGCTTCCACATTATGCCT-TCC
* * * *
30659100 AG-CCGGCTGAGCGCCCGTACACTTGTTTCATGGGTTGACTTAGA
126 AGACCGGCTAAGCACCCGCACACTCGTTTCATGGGTTGACTTAGA
*
30659144 CATACGTAGTTCATCCCCAGTCTAAGC
1 CATACGGAGTTCATCCCCAGTCTAAGC
30659171 ATATGGAGTT
Statistics
Matches: 162, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
169 12 0.07
170 137 0.85
171 10 0.06
172 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (170 bp):
CATACGGAGTTCATCCCCAGTCTAAGCCCTAGGCGGACCGAGGGTTATGGCAACAGGACCAGCAG
CAAGATCGACAGCACGTGAGGGGGACCGGCTCAATCCTCGGCTTCCACATTATGCCTTCCAGACC
GGCTAAGCACCCGCACACTCGTTTCATGGGTTGACTTAGA
Found at i:30659853 original size:26 final size:26
Alignment explanation
Indices: 30659805--30659857 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30659795 GTTGACCTGG
*
30659805 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
30659831 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
30659857 G
1 G
30659858 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:30660063 original size:157 final size:158
Alignment explanation
Indices: 30659831--30660174 Score: 442
Period size: 159 Copynumber: 2.2 Consensus size: 158
30659821 CTTAGTCTAA
** * *
30659831 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAATCGGACCGAGGGTTGCGACAGCAAGACCGAC
* * * * * *
30659895 AGCATGTAGA-GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTT-CGGCCGACTGAGCG
65 AGAACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCCGCCT-TTCCGGCCGACTGAGCA
* *
30659958 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCCCATTTCATGGGTTGGCTTAG
* * * * * *
30659988 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGCGACAGCAAGACCGACA
* *
30660053 GAACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCCGCCTTTCCGGCCGACTGAGCAC
66 GAACGCAGA-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCCGCCTTTCCGGCCGACTGAGCAC
* *
30660118 CCGCACGCTCATTTCGTGGGTTGGCTTAG
130 CCGCACGCCCATTTCATGGGTTGGCTTAG
30660147 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
30660175 ATACGAAGTT
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
156 3 0.02
157 57 0.36
158 2 0.01
159 98 0.61
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGCGACAGCAAGACCGACA
GAACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCCGCCTTTCCGGCCGACTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:30660184 original size:26 final size:26
Alignment explanation
Indices: 30660147--30660199 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30660137 GTTGGCTTAG
*
30660147 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
30660173 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
30660199 G
1 G
30660200 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:30660349 original size:26 final size:26
Alignment explanation
Indices: 30660320--30660372 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30660310 GTTGACTTAG
*
30660320 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
30660346 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30660372 G
1 G
30660373 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30660751 original size:515 final size:515
Alignment explanation
Indices: 30659787--30660759 Score: 1340
Period size: 515 Copynumber: 1.9 Consensus size: 515
30659777 TGTATGCTTT
* * * **
30659787 TTTCGTGGGTTGACCTGGGCATACGGAGTTCATCCTTAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
30659852 TCTAAGATCGAATCGGACCGAGGGTTGCGACAGCAAGATCGACAGCATGTAGAGGGACCGGGTCG
66 TCTAAGATCAAATCGGACAGAGGGTTGCGACAGCAAGATCGACAGCACGTAGAGGGACCGGGCCG
* * * * **
30659917 ATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGTACGCCCGTTTCATGGGTTG
131 ATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTGAGAACCCGTACGCCCGTTTCATGGGTTG
* * *
30659982 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGA
196 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGA
* * * * * * * *
30660047 CCGACAGAACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCCGCCTTTCCGGCCGACT
261 CCGACAGAAAGCAGAAGGGGATCAGGCCGATCCCCGACTTGCGCATTCCACCTCTCCAGCCGACT
* *
30660112 GAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
326 GAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAT
* * *
30660177 ACGAAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAAGACCAGCAGCAG
391 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGACCAGCAGCAG
30660242 GATCAGCAGCATTTTGCCTCTCGACCGACCTGTCCGACTAGAAGAGCACCCACACGCTCG
456 GATCAGCAGCATTTTGCCTCTCGACCGACCTGTCCGACTAGAAGAGCACCCACACGCTCG
* * *
30660302 TTTCATGGGTTGACTTAGGCATACAGAGTTTATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * ** *
30660367 TCTAAGATCAAA-CTGGACAGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGGGGGGACCGGGC
66 TCTAAGATCAAATC-GGACAGAGGGTTGCGACAGCAAGATCGACAGCACGTA-GAGGGACCGGGC
* * **
30660431 CGATCCCCAAG-TTGCGCATTATGCCTCTCCGACCGGCTGAGAACCCGTATGCCCGTTTTGTGGG
129 CGATCCCC-AGCTTGCGCATTATGCCTCTCCGACCGACTGAGAACCCGTACGCCCGTTTCATGGG
* * *
30660495 TTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGCCCCGGCCAGACCGAGGGTTGTGGCAGCG
193 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCA
* * ** * *
30660560 GGACCGACAGAAAGTAGAAGGGGA-CAGGCTGATCCGTGACTTGCGCATTCTACCTCTCCAGTCG
258 GGACCGACAGAAAGCAGAAGGGGATCAGGCCGATCCCCGACTTGCGCATTCCACCTCTCCAGCCG
** * * *
30660624 GTTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
323 ACTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * * *
30660689 CTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGACCAGCAG
388 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGACCAGCAG
30660754 CAGGAT
453 CAGGAT
30660760 TGGCAGCACG
Statistics
Matches: 393, Mismatches: 62, Indels: 6
0.85 0.13 0.01
Matches are distributed among these distances:
514 1 0.00
515 249 0.63
516 142 0.36
517 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (515 bp):
TTTCATGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAAATCGGACAGAGGGTTGCGACAGCAAGATCGACAGCACGTAGAGGGACCGGGCCG
ATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTGAGAACCCGTACGCCCGTTTCATGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGA
CCGACAGAAAGCAGAAGGGGATCAGGCCGATCCCCGACTTGCGCATTCCACCTCTCCAGCCGACT
GAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAT
ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGACCAGCAGCAG
GATCAGCAGCATTTTGCCTCTCGACCGACCTGTCCGACTAGAAGAGCACCCACACGCTCG
Found at i:30661010 original size:209 final size:209
Alignment explanation
Indices: 30660628--30661015 Score: 550
Period size: 209 Copynumber: 1.9 Consensus size: 209
30660618 CAGTCGGTTG
*
30660628 AGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCTTA
1 AGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
*
30660693 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGACCAGCAGCAGG
66 CGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGACCAGCAGCAGG
* ** * *
30660758 ATTGGCAGCACGCAAAGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGCC
131 ATCGGCAGCACGCAAAGGGGACCAAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCAGCC
30660823 CCTCTAGCCGACTA
196 CCTCTAGCCGACTA
** *
30660837 AGCGCCCGTATGCTCGTTTCGTGTGTTGGCTTAGGCATAC-GAAGTTCATTCCATGTCTAAGCAT
1 AGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCAT
* * * * * *
30660901 ATGGAGTTCATTCCCAATCTAAGATCAGATCGGA-CTGA-GGTTGCGGCAGTAGGACCAGCAGCA
65 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGATC-GAGGGTTACGACAGCAGGACCAGCAGCA
* *
30660964 GGATCGGCAGCACGCAGGAA-GGGATCAAGCCGATCCTCGACTTGTGCATTCT
129 GGATCGGCAGCACGCA--AAGGGGACCAAGCCGATCCCCGACTTGTGCATTCT
30661016 CTCTCTCTAG
Statistics
Matches: 157, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
208 39 0.25
209 116 0.74
210 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (209 bp):
AGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
CGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGACCAGCAGCAGG
ATCGGCAGCACGCAAAGGGGACCAAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCAGCC
CCTCTAGCCGACTA
Found at i:30661274 original size:26 final size:26
Alignment explanation
Indices: 30661238--30661290 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30661228 GTTGACTTAG
30661238 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30661264 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30661290 G
1 G
30661291 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30661818 original size:26 final size:26
Alignment explanation
Indices: 30661770--30661820 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30661760 TAGCTTAGGC
*
30661770 ATACGGAGTTCATTCCATTTCTAAGG
1 ATACGGAGTTCATTCCATGTCTAAGG
30661796 ATACGGAGTTCATTCCCA-GTCTAAG
1 ATACGGAGTTCATT-CCATGTCTAAG
30661821 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGG
Found at i:30662529 original size:26 final size:26
Alignment explanation
Indices: 30662493--30662544 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30662483 GTTGACTTAG
*
30662493 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
30662519 GCATACTGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
30662545 AATCAAATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:30662993 original size:158 final size:156
Alignment explanation
Indices: 30662519--30663011 Score: 429
Period size: 158 Copynumber: 3.1 Consensus size: 156
30662509 CCCAGTCTAA
* * * * * *
30662519 GCATACTGAGTTCATTCCCAATCTAAAATCAAATCGGACCGAGGGTTGCGACAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTGCGGCAG-AGGATCGATA
* * * ** * *
30662584 GCGCCCAAGGGGGACCGGACCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCAGC
65 GCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGC-GC
* * *
30662649 CGCACTCCCG-TTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTTGA-GGGTTGGCTTAG
* * ** * * * * * * * *
30662677 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGTGAGACCGGT
1 GCATACGGAGTTCATTCCCA-ATCTAAGATCAAACCGGACCGAGGGTTGCGGCAGAG-GATCGAT
* * * * * * * **
30662741 AGCATGCAGAGTGGGATCGGGTCGA-CCCTCGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAAT
64 AGCACGCAG-GGGGGACCGGGTCGATCCC-CAGCTTGCGCATTCTGCCTCTCCGGCC-GGTTGA-
* *
30662805 GC-CCGTACGCTCGTTTTGTA-GGTTGACTTAG
125 GCGCCGCACGCTCGTTTTG-AGGGTTGGCTTAG
* * **
30662836 GCATATGGAGTTCTTTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTGCGGCAG-AGGATCGATA
* *
30662901 GCACGTAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCGCC
65 GCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCC
30662966 TGCACGCTCGTTTTGAGGGTTGGCTTAG
130 -GCACGCTCGTTTTGAGGGTTGGCTTAG
*
30662994 TCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
30663012 ATGTCTAAGC
Statistics
Matches: 252, Mismatches: 69, Indels: 28
0.72 0.20 0.08
Matches are distributed among these distances:
156 2 0.01
157 9 0.04
158 123 0.49
159 105 0.42
160 10 0.04
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTGCGGCAGAGGATCGATAG
CACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCG
CACGCTCGTTTTGAGGGTTGGCTTAG
Found at i:30663031 original size:26 final size:26
Alignment explanation
Indices: 30662995--30663046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30662985 TTGGCTTAGT
30662995 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
30663021 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
30663047 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:30667629 original size:26 final size:26
Alignment explanation
Indices: 30667579--30667631 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30667569 GTTGGCTTAG
*
30667579 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
30667605 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
30667631 G
1 G
30667632 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:30667995 original size:26 final size:26
Alignment explanation
Indices: 30667959--30668011 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30667949 GTTGACTTAG
*
30667959 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30667985 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30668011 G
1 G
30668012 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30668286 original size:159 final size:160
Alignment explanation
Indices: 30668093--30668489 Score: 527
Period size: 159 Copynumber: 2.5 Consensus size: 160
30668083 ACGCATTCTA
* * * *
30668093 CCTCTCCGGTCGGCTGAACGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTTCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT
* * *
30668158 TCCATGTCTAAGCCCCAGTCC-GACTGAGGGTTGTGGCAGC-GGGACCGGCAGCACGCAGAGGGG
66 TCCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGG-CCGACAGCACGCAG-GGGG
* *
30668221 -GATCGGGCCGATCCTCGGCTTGCACATTATG
129 AGATCGGGCCGATCCCCGACTTGCACATTATG
* * * *
30668252 CCTCTTCGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGTTTGACTTATGCATATGGAGTTCAT
1 CCTCTTCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT
* *
30668317 TCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGGGTCGACAGCACGCAGGGGGA
66 T-CCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGGCCGACAGCACGCAGGGGGA
* *
30668380 GATCGGGCCGATCCCCGACTTGCGCATTCTG
130 GATCGGGCCGATCCCCGACTTGCACATTATG
* * * *
30668411 CCTC-TCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCA
1 CCTCTTC-GGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCA
30668475 TTCCATGTCTAAGCA
65 TTCCATGTCTAAGCA
30668490 TACAAAGTTC
Statistics
Matches: 206, Mismatches: 25, Indels: 13
0.84 0.10 0.05
Matches are distributed among these distances:
158 14 0.07
159 185 0.90
160 7 0.03
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (160 bp):
CCTCTTCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAT
TCCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGGCCGACAGCACGCAGGGGGAG
ATCGGGCCGATCCCCGACTTGCACATTATG
Found at i:30669229 original size:26 final size:26
Alignment explanation
Indices: 30669193--30669245 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30669183 GTTGACTTAG
30669193 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
30669219 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
30669245 G
1 G
30669246 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:30669749 original size:159 final size:157
Alignment explanation
Indices: 30669254--30669870 Score: 526
Period size: 159 Copynumber: 3.8 Consensus size: 157
30669244 AGATCGGACA
*
30669254 GGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGA-CTGGGCCGATCCCCGGCTTG
1 GGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGATC-GGGCCGATCCCTGGCTTG
* * * * *
30669318 CGCATTTTACCTCTCTGGCCGGCCGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
65 CGCATTATACCTCTCTGG-CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
*
30669383 GGAGTTCATTCCATGTCTAAGCCCCAGTC
129 GAAGTTCATTCCATGTCTAAGCCCCAGTC
** * * * * *
30669412 GGACCGAGGGTTGTGGCAGC-GAGA-CCAGCAGCACGCAGAGGGGGATTGGGTCGATCCTTGGCT
1 GGACCGAGGGTTGCAGTAGCAG-GATCGA-CAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCT
* * * * ** *
30669475 TGCGCATTATGCCTCTCTGGCTGGCTCAGTGCCCGCACGCTTATTTTGTGGGTTGACTTAGGCAT
63 TGCGCATTATACCTCTCTGGC-GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
* ***
30669540 ACGAAGTTCGTTCCCA-GTCTAAG-ATAAGATC
127 ACGAAGTTCATT-CCATGTCTAAGCCCCAG-TC
* * * * * *
30669571 GGACCGAGGGTTACAGTAGCAGGATCGACAGCATGCAGGGGTAGATCGAGCCTATCCCTGGCTTA
1 GGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGG-GGATCGGGCCGATCCCTGGCTTG
* *
30669636 CGCATTCTACCTCT-TCGGTCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATA
65 CGCATTATACCTCTCT-GG-CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
* *
30669700 TGAAGTTCATTCCATGTCTAAGCCCCAGTT
128 CGAAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * *
30669730 GAATCGAGGGTTGTGGTAGCAGGACCGGCAGTGGGATCGACAGCACACAGAGGGGGATCGGGCTG
1 GGACCGA-GG--GT--T-GCAGTA---GCA---GGATCGACAGCACGCAG-GGGGGATCGGGCCG
** * ** * * *
30669795 ATCCCCAGCTTGTGCATTATGTCTCTCTGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTG
53 ATCCCTGGCTTGCGCATTATACCTCTCTG-GCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
*
30669860 ACTTAGGCATA
117 GCTTAGGCATA
30669871 TAGAGGTCAT
Statistics
Matches: 355, Mismatches: 75, Indels: 45
0.75 0.16 0.09
Matches are distributed among these distances:
157 3 0.01
158 39 0.11
159 205 0.58
160 11 0.03
162 2 0.01
164 1 0.00
165 4 0.01
168 3 0.01
171 83 0.23
172 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
GGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGC
GCATTATACCTCTCTGGCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGA
AGTTCATTCCATGTCTAAGCCCCAGTC
Found at i:30669896 original size:26 final size:26
Alignment explanation
Indices: 30669866--30669918 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30669856 GTTGACTTAG
30669866 GCATATAG-AGGTCATCCCCAGTCTAA
1 GCATA-AGAAGGTCATCCCCAGTCTAA
* * *
30669892 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGGTCATCCCCAGTCTAA
30669918 G
1 G
30669919 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGAAGGTCATCCCCAGTCTAA
Found at i:30670247 original size:26 final size:26
Alignment explanation
Indices: 30670211--30670261 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30670201 TGGCTTAGGC
30670211 ATACAGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
*
30670237 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
30670262 ATCGAACCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:30670253 original size:343 final size:348
Alignment explanation
Indices: 30669536--30670264 Score: 841
Period size: 343 Copynumber: 2.1 Consensus size: 348
30669526 GTTGACTTAG
* * ** ** *
30669536 GCATACGAAGTTCGTTCCCAGTCTAAGATAAGA-TCGGACCGAGGGTT-ACAGTAGCAGGATCGA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACT-GGATTGAGGGTTGTGA-CAGCAGGATCGA
* * **
30669599 CAGCATGCAGGGGTAGATCGAGCCTATCCCTGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGC
64 CAGCATGCAGGGGTAGATCGAGCCGATCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGC
* * *
30669664 GCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCCCCAGT
129 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
30669729 TGAATCGAGGGTTGTGGTAGCAGGACCGGCAGTGGGATCGACAGCACACAGAGGGGGATCGGGCT
194 CGAAACAAGGGTTGTGGT------A--GGCAGTGGGATCGACAGCACACAGAGGGGGATCGAGCT
* * * * *
30669794 GATCCCCAGCTTGTGCATTATGTCTCTCTGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTT
251 GATCCCCAGCTTGCGCATTATGTCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCATGGGTT
*
30669859 GACTTAGGCATATAGAGGTCATCCCCAGTCTAA
316 GACTTAGGCATACAGAGGTCATCCCCAGTCTAA
30669892 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGTGACAGCAGGATCGACA
* * *
30669957 GCATGCAGGGG-GGATCG-GACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
66 GCATGCAGGGGTAGATCGAG-CCGATCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCG
* * * * * *
30670020 CCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAG-C
130 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTC
** * * *
30670084 GAAACTAAGGG-T-T-GT-GGCAGTGGGATCGGTAGCACGCAGATGGGGATCGAGCTGATCCCCG
195 GAAAC-AAGGGTTGTGGTAGGCAGTGGGATCGACAGCACACAGAGGGGGATCGAGCTGATCCCCA
* * * *
30670145 GCTTGCGCATTAT-TCCTCTCCGGCCGGCTCAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
259 GCTTGCGCATTATGT-CTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAG
* *
30670209 GCATACAGAGTTCAT-TCCATGTCTAA
323 GCATACAGAGGTCATCCCCA-GTCTAA
* *
30670235 GTATACGGAGTTCATTCCCAGTCTAAGATC
1 GCATACGAAGTTCATTCCCAGTCTAAGATC
30670265 GAACCAAACC
Statistics
Matches: 321, Mismatches: 46, Indels: 25
0.82 0.12 0.06
Matches are distributed among these distances:
342 4 0.01
343 140 0.44
352 2 0.01
353 1 0.00
354 6 0.02
355 101 0.31
356 65 0.20
357 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (348 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGTGACAGCAGGATCGACA
GCATGCAGGGGTAGATCGAGCCGATCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGC
CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCG
AAACAAGGGTTGTGGTAGGCAGTGGGATCGACAGCACACAGAGGGGGATCGAGCTGATCCCCAGC
TTGCGCATTATGTCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCA
TACAGAGGTCATCCCCAGTCTAA
Found at i:30670395 original size:26 final size:26
Alignment explanation
Indices: 30670359--30670409 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30670349 TGGCTTAGGC
30670359 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
30670385 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
30670410 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:30670406 original size:148 final size:149
Alignment explanation
Indices: 30670137--30670428 Score: 559
Period size: 148 Copynumber: 2.0 Consensus size: 149
30670127 GGATCGAGCT
*
30670137 GATCCCCGGCTTGCGCATTATTCCTCTCCGGCCGGCTCAGTGCCCGCACGCCCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATTCCTCTCCGGACGGCTCAGTGCCCGCACGCCCGTTTCGTGGGTT
30670202 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGA
66 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGA
30670267 ACCAAACCGAGCGTCGCTC
131 ACCAAACCGAGCGTCGCTC
30670286 GATCCCCGGCTTGCGCATTATTCCTCTCC-GACGGCTCAGTGCCCGCACGCCCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATTCCTCTCCGGACGGCTCAGTGCCCGCACGCCCGTTTCGTGGGTT
*
30670350 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGA
66 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGA
30670415 ACCAAACCGAGCGT
131 ACCAAACCGAGCGT
30670429 TGCGATAGCA
Statistics
Matches: 141, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
148 112 0.79
149 29 0.21
ACGTcount: A:0.19, C:0.31, G:0.24, T:0.26
Consensus pattern (149 bp):
GATCCCCGGCTTGCGCATTATTCCTCTCCGGACGGCTCAGTGCCCGCACGCCCGTTTCGTGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGA
ACCAAACCGAGCGTCGCTC
Found at i:30671121 original size:26 final size:26
Alignment explanation
Indices: 30671092--30671144 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30671082 GTTGACTTAG
30671092 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30671118 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30671144 G
1 G
30671145 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30671465 original size:26 final size:26
Alignment explanation
Indices: 30671436--30671488 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30671426 GTTGACTTAG
*
30671436 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* *
30671462 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
30671488 G
1 G
30671489 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:30671824 original size:159 final size:159
Alignment explanation
Indices: 30671462--30671893 Score: 419
Period size: 159 Copynumber: 2.7 Consensus size: 159
30671452 CCCAGTCTAA
* * * * *
30671462 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
30671527 GCATGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTC-TCTGGCCGGCTGAAAGC
66 GCACGCAGGGGGGACCGGATCGATCCCCGACTTGCGCATTATGCCTCTTCTGGCCAGCTCAAAGC
*
30671591 CCGTATGCCCGTTTCGTGGGTTGGCTTAG
131 CCGTATGCCCGTTTCGTGGGTTGACTTAG
* ** * * ** * * *
30671620 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CGAAACTAAGGGTTGTGGCAGCAGGACCGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * *
30671683 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGTATTATGCCTCTTC-GGTCAGCTCAG
64 CAGCACGCAG-GGGGGACCGGATCGATCCCCGACTTGCGCATTATGCCTCTTCTGGCCAGCTCAA
* * *
30671747 CGCCCG-A-GCGCTGGTTTCGTGGTTTGACTTAG
128 AGCCCGTATGC-C-CGTTTCGTGGGTTGACTTAG
* * *
30671779 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
30671844 GCACGTAGGGGGGATCGGGTCGATCGCC-AGCTTGCGCATTTTGCCTCTTC
66 GCACGCAGGGGGGACCGGATCGATCCCCGA-CTTGCGCATTATGCCTCTTC
30671894 ATCCGGTTGA
Statistics
Matches: 215, Mismatches: 50, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.03
158 89 0.41
159 115 0.53
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGATCGATCCCCGACTTGCGCATTATGCCTCTTCTGGCCAGCTCAAAGC
CCGTATGCCCGTTTCGTGGGTTGACTTAG
Found at i:30671987 original size:26 final size:25
Alignment explanation
Indices: 30671938--30671988 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
30671928 TTCACTTACA
*
30671938 CATAGGAGTTCATTCCATGTCTAAG
1 CATAGGAGTTCATTCCATGACTAAG
30671963 CATACGGAGTTCATTCCCA-GACTAAG
1 CATA-GGAGTTCATT-CCATGACTAAG
30671989 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 16 0.70
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
CATAGGAGTTCATTCCATGACTAAG
Found at i:30672160 original size:26 final size:26
Alignment explanation
Indices: 30672131--30672183 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30672121 GTTGACTTAG
*
30672131 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
30672157 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
30672183 G
1 G
30672184 ATGAAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:30672172 original size:195 final size:195
Alignment explanation
Indices: 30671831--30672192 Score: 505
Period size: 194 Copynumber: 1.9 Consensus size: 195
30671821 GGGTTGCGGT
* * * * * *
30671831 AGCAAGATCGACAGCACGTAGGGGGGATCGGGTCGATCGCCAGCTTGCGCATTTTGCCTCTTCAT
1 AGCAAGATCGACAGCACGCAGAGGGGACCGAGTCGATCGCCAGCTTGCGCATTTTGCCTCTCCAG
* *
30671896 CCGGTTGAGCACCCGCACACTCGTTTCGTGGGTTCACTTACACATAGGAGTTCATTCCATGTCTA
66 CCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTCACTTACACATAGGAGTTCATACCATGTCTA
30671961 AGCATACGGAGTTCATTCCCAGACTAAGATCAAACTGGACTGAGGTTGGCGACAATAGGACCAGC
131 AGCATACGGAGTTCATTCCCAGACTAAGATCAAACTGGACTGAGGTTGGCGACAATAGGACCAGC
* *
30672026 AGCAGGATCGACAGCACGCA-AGGGGACCGAGTCGAT-GCCCAGCTTGCGTATTTTGCCTCTCCA
1 AGCAAGATCGACAGCACGCAGAGGGGACCGAGTCGATCG-CCAGCTTGCGCATTTTGCCTCTCCA
* * * * **
30672089 GCCGGCTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATACC-TAGT
65 GCCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTCACTTACACATA-GGAGTTCATACCAT-GT
* * *
30672153 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATGAAACTG
128 CTAAGCATACGGAGTTCATTCCCAGACTAAGATCAAACTG
30672193 AACCAAGGGT
Statistics
Matches: 145, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
193 1 0.01
194 76 0.52
195 68 0.47
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (195 bp):
AGCAAGATCGACAGCACGCAGAGGGGACCGAGTCGATCGCCAGCTTGCGCATTTTGCCTCTCCAG
CCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTCACTTACACATAGGAGTTCATACCATGTCTA
AGCATACGGAGTTCATTCCCAGACTAAGATCAAACTGGACTGAGGTTGGCGACAATAGGACCAGC
Found at i:30673219 original size:26 final size:26
Alignment explanation
Indices: 30673190--30673242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30673180 GTTGACTTAG
30673190 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30673216 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30673242 G
1 G
30673243 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.