Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 332 of 402
Found at i:30674673 original size:26 final size:26
Alignment explanation
Indices: 30674637--30674687 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30674627 TTGACTTAGG
30674637 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
* *
30674663 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
30674688 GATCGAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:30674886 original size:12 final size:12
Alignment explanation
Indices: 30674869--30674899 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
30674859 TGAGGGTTGT
30674869 GGCAGCAGGATC
1 GGCAGCAGGATC
30674881 GGCAGCAGGATC
1 GGCAGCAGGATC
*
30674893 GACAGCA
1 GGCAGCA
30674900 CGTAGAGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.39, T:0.06
Consensus pattern (12 bp):
GGCAGCAGGATC
Found at i:30675199 original size:367 final size:368
Alignment explanation
Indices: 30674504--30675254 Score: 970
Period size: 367 Copynumber: 2.0 Consensus size: 368
30674494 GGGTTACGGT
* * *
30674504 AGCAGGACCGGTAGCAGGATCGACAGCACGCAGGGAGGGACCGAGTTGATCCCTGGCTTGTGCAT
1 AGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGTTGATCCCTGGCTTGTACAT
* * * * ** * **
30674569 TCTACCTCTCTGGTCGGCCTCTTCGGTCGGCTAAGCGCCCGCACGCTTGTTTTGTGGGTTGACTT
66 TATACCTCTCCGATCGACCTCTTCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * *
30674634 AGGCATACGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCTAGTCTAAGATCGAATCAG
131 AGGCATACAGAGGTCATCCCCAGTCTAACCATACGAAGTTCATTCCTAGTCTAAGATCGAATCAG
* * ** *
30674699 ATCGAGGGTTGCGGCAGTAGGATCGACAGCATGTAGGGGGGATTGGACCGATCCCCAGCTTGTGC
196 ATCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGACTGGACCGATCCCCAGCTTGTGC
** *
30674764 ATTCTACATCTCCGGCCGGCTGAGCGCTCACACGTTCGTTTCGTACGTTGGCTTAGGCATACGGA
261 ATTCTACATCTCCGGCCGGCTGAGCGCTCACACGCCCGTTTCATACGTTGGCTTAGGCATACGGA
** *
30674829 GTTCATTCCATGTCTAAGCCCCAGTTAAACTGAGGGTTGTGGC
326 GTTCATTCCATGTCTAAGCCCCAGCGAAACTAAGGGTTGTGGC
* * * * *
30674872 AGCAGGATCGGCAGCAGGATCGACAGCACGTAGAGAGGGATCGGGTTGATCGCTGGCTTGTACAT
1 AGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGTTGATCCCTGGCTTGTACAT
** * * *
30674937 TATGTCTCTCCGATTGACCTCTTCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTT
66 TATACCTCTCCGATCGACCTCTTCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * * *
30675002 AGGCATACAGAGGT-ATCCCCAGTCTAAGCATATGAAGTTCATTCCTAGTCTAAGATTGGATCAG
131 AGGCATACAGAGGTCATCCCCAGTCTAACCATACGAAGTTCATTCCTAGTCTAAGATCGAATCAG
* ** *
30675066 ATCGAGGGTTGCGACAGCAGGATCGATAGCATACAGGGGGGACTGGACCGATCCCTGGCTTTTGC
196 ATCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGACTGGACCGATCCCCAGCTTGTGC
* * * * ** * *
30675131 ATTCTGCCTCTCTGGCCGGTTCGAAGC-C-CGTACGCCCGTTTCAT-GGTTTGGCTTAGGCATAG
261 ATTCTACATCTCCGGCCGGCT-G-AGCGCTCACACGCCCGTTTCATACG-TTGGCTTAGGCATAC
30675193 GGAGTTCATTCCATGTCTAAGCCCCAGCGAAACTAAGGGTTGTGGC
323 GGAGTTCATTCCATGTCTAAGCCCCAGCGAAACTAAGGGTTGTGGC
*
30675239 AGCAGGACCGACAGCA
1 AGCAGGACCGGCAGCA
30675255 CGTAGAGGGG
Statistics
Matches: 326, Mismatches: 54, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
366 1 0.00
367 200 0.61
368 122 0.37
369 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (368 bp):
AGCAGGACCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCGAGTTGATCCCTGGCTTGTACAT
TATACCTCTCCGATCGACCTCTTCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACAGAGGTCATCCCCAGTCTAACCATACGAAGTTCATTCCTAGTCTAAGATCGAATCAG
ATCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGACTGGACCGATCCCCAGCTTGTGC
ATTCTACATCTCCGGCCGGCTGAGCGCTCACACGCCCGTTTCATACGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGCGAAACTAAGGGTTGTGGC
Found at i:30676798 original size:26 final size:26
Alignment explanation
Indices: 30676762--30676840 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
30676752 GTTGACTTAG
30676762 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30676788 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30676814 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30676840 G
1 G
30676841 ATTAGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30677270 original size:159 final size:160
Alignment explanation
Indices: 30677107--30677402 Score: 368
Period size: 159 Copynumber: 1.8 Consensus size: 160
30677097 AGCTGGACCA
* *
30677107 AGGGTTGTGGCAG-TGCGACCGATAGCACGCA-GAGGGGGACCGGG-CGGATCCCCGGCTTGTGC
1 AGGGTTGTGGCAGCAG-GACCGATAGCACGCAGGA-GGGGACCGGGTCAG-TCCCCGGCTTGTGC
* * *
30677169 GTTCTGCCTCTCCGATCGGCTCAGC-ACC-CACACGATCATTTCGTGGGTTGACTTAGGCATACG
63 ATTCTGCCTCT-CGACCGGCTCAGCGACCACACACGATCATTTCGTGGGTTGACTTAGACATACG
*
30677232 GTGTTCATTACCAGTCTAAGATCAAATCAGATCG
127 GAGTTCATTACCAGTCTAAGATCAAATCAGATCG
* * * *
30677266 AGGGTTGTGGTAGCAGGATCGATAGCACGTAGGAGGGGATCGGGTCAGTCCCCGGCTTGTGCATT
1 AGGGTTGTGGCAGCAGGACCGATAGCACGCAGGAGGGGACCGGGTCAGTCCCCGGCTTGTGCATT
* * * * *
30677331 CTGCCTCTCGACCGGCTGAGCGCCCAGACACACGCTCGTTTCGTGGGTTGGCTTAGACATACGGA
66 CTGCCTCTCGACCGGCTCAGCGACC--ACACACGATCATTTCGTGGGTTGACTTAGACATACGGA
30677396 GTTCATT
129 GTTCATT
30677403 CCATATCGAA
Statistics
Matches: 115, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
158 11 0.10
159 60 0.52
160 5 0.04
162 39 0.34
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (160 bp):
AGGGTTGTGGCAGCAGGACCGATAGCACGCAGGAGGGGACCGGGTCAGTCCCCGGCTTGTGCATT
CTGCCTCTCGACCGGCTCAGCGACCACACACGATCATTTCGTGGGTTGACTTAGACATACGGAGT
TCATTACCAGTCTAAGATCAAATCAGATCG
Found at i:30677424 original size:26 final size:26
Alignment explanation
Indices: 30677388--30677454 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
30677378 TTGGCTTAGA
30677388 CATACGGAGTTCATTCCATATCGAAG
1 CATACGGAGTTCATTCCATATCGAAG
30677414 CATACGGAGTTCATTCCATATCGAAG
1 CATACGGAGTTCATTCCATATCGAAG
*
30677440 CGTACGGAGTTCATT
1 CATACGGAGTTCATT
30677455 TCCAGTCTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCGAAG
Found at i:30677977 original size:26 final size:26
Alignment explanation
Indices: 30677927--30677978 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30677917 TTCGCTTACA
** *
30677927 CATACGAAGTTCATTCCTTGTCTAAG
1 CATACGAAGTTCATTCCCAGACTAAG
*
30677953 CATACGGAGTTCATTCCCAGACTAAG
1 CATACGAAGTTCATTCCCAGACTAAG
30677979 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGACTAAG
Found at i:30678489 original size:26 final size:26
Alignment explanation
Indices: 30678438--30678490 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30678428 ATTGGCTTAG
* *
30678438 GCATACGGAGTTAATTCCATTACTAA
1 GCATACGGAGATAATTCCAATACTAA
*
30678464 GCATACGGAGATCATTCTCAAT-CTAA
1 GCATACGGAGATAATTC-CAATACTAA
30678490 G
1 G
30678491 ATCAGACCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATAATTCCAATACTAA
Found at i:30678664 original size:27 final size:26
Alignment explanation
Indices: 30678634--30678687 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
30678624 GTTGACTTAG
30678634 GCATACGGAGTTCATTCCTAAGTCTAA
1 GCATACGGAGTTCATTCC-AAGTCTAA
* *
30678661 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
30678687 G
1 G
30678688 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:30679015 original size:159 final size:158
Alignment explanation
Indices: 30678661--30679059 Score: 406
Period size: 159 Copynumber: 2.5 Consensus size: 158
30678651 CTAAGTCTAA
* * * * * *
30678661 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGACCGACA
* * * * * *** * * * * *
30678726 GCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGCACATTTTGCCTCTCTGGCTGGCTAAGCGGC
66 GCATGCAGGGGGGACCGAGCTAATACCCAGCTTACACATTACACCTATCCGACAGGCTAAGCGCC
* * *
30678791 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACACTCGTTTCATGGGTTGACTTAG
* * ** * * *
30678819 GCATAGGGAGTTCATT-CCATGTTTAAGCCCCTG-TCAGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGGACCGA
* * * *
30678882 CAGCATGCAGAGGGGGACCGAGCTAATACTCAGTTTACGCATTACACCTATCCGACAGGCTCAGC
64 CAGCATGCAG-GGGGGACCGAGCTAATACCCAGCTTACACATTACACCTATCCGACAGGCTAAGC
30678947 GCCCGCACACTCGTTTCATGGGTTGACTTAG
128 GCCCGCACACTCGTTTCATGGGTTGACTTAG
* * * *
30678978 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGACCGACA
**
30679043 GCGCGCAGGGGGGACCG
66 GCATGCAGGGGGGACCG
30679060 GGTCGGTCCT
Statistics
Matches: 192, Mismatches: 44, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.02
158 66 0.34
159 120 0.62
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGACCGACA
GCATGCAGGGGGGACCGAGCTAATACCCAGCTTACACATTACACCTATCCGACAGGCTAAGCGCC
CGCACACTCGTTTCATGGGTTGACTTAG
Found at i:30679136 original size:158 final size:158
Alignment explanation
Indices: 30678661--30679162 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 158
30678651 CTAAGTCTAA
* * * *
30678661 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * * *
30678725 AGCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGCACATTTTGCCTCTCTGGCTGGCTAAGCGG
65 AGCATGCAGGGGGGACCGGGCTGATCCTCAGCTTACGCATTTTGCCTCTCCGACTGGCTAAGCGC
*
30678790 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
30678819 GCATAGGGAGTTCATTCCATGTTTAAGCCCCTG-TCAGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * *** * * *
30678883 AGCATGCAGAGGGGGACCGAGCTAATACTCAGTTTACGCATTACACCTATCCGACAGGCTCAGCG
65 AGCATGCAG-GGGGGACCGGGCTGATCCTCAGCTTACGCATTTTGCCTCTCCGACTGGCTAAGCG
* *
30678948 CCCGCACACTCGTTTCATGGGTTGACTTAG
129 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
* *
30678978 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGAT
** * * * * *
30679042 AGCGCGCAGGGGGGACCGGG-TCGGTCCTTAGCTTACGCATTTTGCCTCTCCGACTGGTTGAGCT
65 AGCATGCAGGGGGGACCGGGCT-GATCCTCAGCTTACGCATTTTGCCTCTCCGACTGGCTAAGCG
* * *
30679106 CCCACACACTCATTTCGTGGGTAGGCTTAG
129 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
30679136 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30679163 CATACGGAGT
Statistics
Matches: 274, Mismatches: 63, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 7 0.03
158 144 0.53
159 120 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGATA
GCATGCAGGGGGGACCGGGCTGATCCTCAGCTTACGCATTTTGCCTCTCCGACTGGCTAAGCGCC
CGCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:30679172 original size:26 final size:26
Alignment explanation
Indices: 30679136--30679188 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30679126 GTAGGCTTAG
30679136 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
30679162 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
30679188 G
1 G
30679189 AATGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:30679556 original size:27 final size:27
Alignment explanation
Indices: 30679518--30679570 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
30679508 GTTGACTTAG
* *
30679518 GCATACGGAGTTCATTGCCAGTCTAAA
1 GCATACGGAGTTCATTCCCAATCTAAA
30679545 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
30679571 GATCGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCAATCTAAA
Found at i:30679914 original size:26 final size:25
Alignment explanation
Indices: 30679866--30679917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
30679856 GTTGGCTTAG
30679866 GCATACGGATTCATTCCATGTCTAA
1 GCATACGGATTCATTCCATGTCTAA
30679891 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGA-TTCATTCCAT-GTCTAA
30679917 G
1 G
30679918 ATCATATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGGATTCATTCCATGTCTAA
Found at i:30680273 original size:26 final size:26
Alignment explanation
Indices: 30680244--30680296 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30680234 GTTGACTTAG
*
30680244 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30680270 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30680296 G
1 G
30680297 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30680776 original size:27 final size:27
Alignment explanation
Indices: 30680746--30680797 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
30680736 TTGGCTGAGG
30680746 CATACGGAGTTCATT-CCATGTCTAAGC
1 CATACGGAGTTCATTCCCA-GTCTAAGC
*
30680773 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
30680798 AGATCGAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (27 bp):
CATACGGAGTTCATTCCCAGTCTAAGC
Found at i:30680948 original size:186 final size:186
Alignment explanation
Indices: 30680593--30680956 Score: 423
Period size: 186 Copynumber: 2.0 Consensus size: 186
30680583 AAGGCATACA
* * * *
30680593 GAGTTCATTCCCAATCTAAGATCACACCGGACCGAGGGTTGCGGCAGGTAGGATTGACACACGCA
1 GAGTTCATTCCCAATCTAAGATCACACAGGACCGAGGGTTGCGACAGGCAGGATCGACACACGCA
* * * * *
30680658 GGAGGGGACCAAGTCGATCCCCGGCTTATGCATTTTGCCTTTCCGGTCGGTTGAGCGCCCGCACG
66 GGAGGGGACCAAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACG
* ** **
30680723 CTTGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAGCCATATG
131 CTCGTTTCATCAGTTGGCTGAGGCATACAAAGTTCATTCCATGTCTAAGCCATATG
* *
30680779 GAGTTCATTCCCAGTCTAAAGATCGA-ATCAGGATCGAGGGTTGCGACA-GCAGGATCGACAGCA
1 GAGTTCATTCCCAATCT-AAGATC-ACA-CAGGACCGAGGGTTGCGACAGGCAGGATCGACA-CA
* * * * * *
30680842 CGTAGG-GGGGATCGAGTCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGATCGGTTTGAGTGCTC
62 CGCAGGAGGGGACCAAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGG-TTGAGCGCCC
* * *
30680905 GCACGCTCGTTTCGTCAGTT-GCTTAGGCGTACAAAGTTCATTCCATGTCTAA
126 GCACGCTCGTTTCATCAGTTGGCTGAGGCATACAAAGTTCATTCCATGTCTAA
30680957 TCCCCAGCCA
Statistics
Matches: 148, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
186 69 0.47
187 54 0.36
188 25 0.17
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (186 bp):
GAGTTCATTCCCAATCTAAGATCACACAGGACCGAGGGTTGCGACAGGCAGGATCGACACACGCA
GGAGGGGACCAAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACG
CTCGTTTCATCAGTTGGCTGAGGCATACAAAGTTCATTCCATGTCTAAGCCATATG
Found at i:30681270 original size:351 final size:359
Alignment explanation
Indices: 30680704--30681405 Score: 850
Period size: 352 Copynumber: 2.0 Consensus size: 359
30680694 GCCTTTCCGG
* * * * *
30680704 TCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCAAACGGAGTTCATCCCATGTCT
** *
30680769 AAGCCATATGGAGTTCATTCCCAGTCTAAAGATCGAATCAGGATCGAGGGTTGCGACAGCAGGAT
66 AAGCCATACAGAGTTCATTCCCAGTCTAAAGATCGAATCAGGACCGAGGGTTGCGACAGCAGGAT
* * * * * * **
30680834 CGACAGCACGTAGGGGGGATCGAGTCGATCCCAGCTTGCGCATTCTGCCTCTCCGATCGGTTTGA
131 CGACAGCACGCAGGGGGGACCGAGCCGATCCCAGCTTGCACATTCTGCCTCTCCGAACCGACTGA
* * * *
30680899 GTGCTCGCACGCTCGTTTCGTCAGTT-GCTTAGGCGTACAAAGTTCATTCCATGTCTAATCCCCA
196 GCGCTCGCACCCTCGTTTCGTCAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCA
* * * *
30680963 GCCAGACCGAGGGTTGTGGCAGCAGGATC-GCAGCACACAGAGGGGGATC-GGCTAATCC-CCGC
261 GCCAGACCGAGGGTTATGGCAGCAGGACCGGCAACACACAGAGGGGGATCGGGCCAATCCTCCGC
*
30681025 TTGCGCATTATGCCTCTCCAATCGGCCTGTCCAA
326 TTACGCATTATGCCTCTCCAATCGGCCTGTCCAA
* * * *
30681059 TCGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCAAATGGAGTTCATCCCA-GTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCAAACGGAGTTCATCCCATGTCT
* * * *
30681123 AAG-CATACAGAGTTCATTCCTAGTCT-AAGATCGGA-CTGGACCGAGGGTTGCGACCGCAGGAT
66 AAGCCATACAGAGTTCATTCCCAGTCTAAAGATCGAATCAGGACCGAGGGTTGCGACAGCAGGAT
* * * *
30681185 CGACAGCACGCAGGTGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTC-AACCGACTG
131 CGACAGCACGCAGGGGGGACCGAGCCGAT-CCCAGCTTGCACATTCTGCCTCTCCGAACCGACTG
** ***
30681249 AGCG-TCCGCACACCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
195 AGCGCT-CGCAC-CCTCGTTTCGTCAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCC
* * * * * *
30681312 CCAGTCGGATCGAGGGTTATGGCAGCGGGACCGGTAACACGCAGAGGGGGATCGGGCCAATCCTC
258 CCAGCCAGACCGAGGGTTATGGCAGCAGGACCGGCAACACACAGAGGGGGATCGGGCCAATCCTC
* *
30681377 GGCTTACGCATTATGCCTCTTCAATCGGC
323 CGCTTACGCATTATGCCTCTCCAATCGGC
30681406 TCAATGCCAC
Statistics
Matches: 290, Mismatches: 50, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
350 1 0.00
351 71 0.24
352 88 0.30
353 37 0.13
354 15 0.05
355 78 0.27
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (359 bp):
TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCAAACGGAGTTCATCCCATGTCT
AAGCCATACAGAGTTCATTCCCAGTCTAAAGATCGAATCAGGACCGAGGGTTGCGACAGCAGGAT
CGACAGCACGCAGGGGGGACCGAGCCGATCCCAGCTTGCACATTCTGCCTCTCCGAACCGACTGA
GCGCTCGCACCCTCGTTTCGTCAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCA
GCCAGACCGAGGGTTATGGCAGCAGGACCGGCAACACACAGAGGGGGATCGGGCCAATCCTCCGC
TTACGCATTATGCCTCTCCAATCGGCCTGTCCAA
Found at i:30681555 original size:159 final size:157
Alignment explanation
Indices: 30681125--30681555 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 157
30681115 CCCAGTCTAA
* * * *
30681125 GCATACAGAGTTCATTCCTAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGACCGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTACGACAGCAGGATCGAC
* * * * * *
30681189 AGCACGCAGGTGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCAACCGACTGAGCGT
65 AGCACGCAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCAACCGACTCA-CAT
* *
30681254 CCGCACACCTGTTTCGTGGGTTGGCTTAG
129 CCGCACACCTATTTCGTGGGTTGACTTAG
* * ** * * * * * *
30681283 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGATCGAGGGTTATGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTACGACAGCAGGATCGA
* * * * * * *
30681346 TAACACGCAGAGGGGGATCGGGCCAATCCTCGGCTTACGCATTATGCCTCTTCAATCGGCTCA-A
64 CAGCACGCAG-GGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCAACCGACTCACA
* *
30681410 TGC-CACACGCTCATTTCGTGGGTTGACTTAT
128 TCCGCACAC-CT-ATTTCGTGGGTTGACTTAG
*
30681441 GCATACGGAGTTCATTCCCAGTCTAAGATTCGGATCGGACCGTGGGTTACGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGGATCGGACCGAGGGTTACGACAGCAGGATCGAC
* * ** *
30681506 AGCACGTAAGGGGGGATCGGGTCAATCCCCAACTTGCGCATTCTACCTCT
65 AGCACG-CAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCT
30681556 CCGACCGTAG
Statistics
Matches: 211, Mismatches: 52, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
156 5 0.02
157 8 0.04
158 87 0.41
159 107 0.51
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCAACCGACTCACATCC
GCACACCTATTTCGTGGGTTGACTTAG
Found at i:30685210 original size:26 final size:26
Alignment explanation
Indices: 30685173--30685225 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30685163 GTTGGCTTAG
*
30685173 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
30685199 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30685225 G
1 G
30685226 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30685582 original size:26 final size:26
Alignment explanation
Indices: 30685552--30685604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30685542 GTTGACTTAG
30685552 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
30685578 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30685604 G
1 G
30685605 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30685919 original size:158 final size:158
Alignment explanation
Indices: 30685578--30685920 Score: 409
Period size: 158 Copynumber: 2.2 Consensus size: 158
30685568 CCCAGTCTAA
* *
30685578 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAACA
* * * * * *
30685643 GCACACAGGGGGGACCGGGCCGATCCCCGGCTTATGCATTATGCCTCTCCGATCGACTCAACGCC
66 GCACACAGGGGGGACAGGGCCGATCCCCGACCTACGCATTATACCTCTCCGATCGACTCAACACC
*
30685708 CAAACGCTCATTTCGTGGGTTGACTTAG
131 CAAACACTCATTTCGTGGGTTGACTTAG
* * * *
30685736 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAACA
* * * * * * ** * * *
30685801 GCACGCAGGGGGGACAGGGTCGGTCCCTGACCTGCGCATTCTACCTCTCCGATCGGTTGAGCACT
66 GCACACAGGGGGGACAGGGCCGATCCCCGACCTACGCATTATACCTCTCCGATCGACTCAACACC
*** * *
30685866 TGTATACTCATTTCGTGGGTTGGCTTAG
131 CAAACACTCATTTCGTGGGTTGACTTAG
30685894 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
30685921 TATACGAAGT
Statistics
Matches: 153, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
157 3 0.02
158 150 0.98
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAACA
GCACACAGGGGGGACAGGGCCGATCCCCGACCTACGCATTATACCTCTCCGATCGACTCAACACC
CAAACACTCATTTCGTGGGTTGACTTAG
Found at i:30685925 original size:26 final size:25
Alignment explanation
Indices: 30685896--30685945 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
30685886 TGGCTTAGGC
*
30685896 ATACGGAGTTCATTCCATGTCTAAGT
1 ATACGAAGTTCATTCCA-GTCTAAGT
30685922 ATACGAAGTTCATTCCAGTCTAAG
1 ATACGAAGTTCATTCCAGTCTAAG
30685946 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (25 bp):
ATACGAAGTTCATTCCAGTCTAAGT
Found at i:30686459 original size:26 final size:26
Alignment explanation
Indices: 30686423--30686475 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30686413 GTTGGCTTAG
30686423 GCATACGGAGTGCATT-CCATGTCTAA
1 GCATACGGAGTGCATTCCCA-GTCTAA
*
30686449 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
30686475 G
1 G
30686476 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:30686859 original size:26 final size:26
Alignment explanation
Indices: 30686830--30686882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30686820 GTTGACTTAG
* *
30686830 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
*
30686856 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
30686882 G
1 G
30686883 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:30687176 original size:159 final size:158
Alignment explanation
Indices: 30686995--30687357 Score: 419
Period size: 159 Copynumber: 2.3 Consensus size: 158
30686985 CCGCACGCCT
* *
30686995 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGATCGGACCGAGGG
* * *
30687059 TTGTGGCAACGGGACCGACAGCACGCAAAGTGGGATCGG-GTCGAT-CCTCAGCTTGCGCATTAT
65 TTGTGGCAACAGGACCAACAGCACGCAAAGGGGGAT-GGAG-CGATCCCT-AGCTTGCGCATTAT
* * * *
30687122 GCCTCTCCGGTCGGCTCAGCGCTCAAACGCTC
127 ACCTCTCCGGTCGACTCAGCACCCAAACGCTC
* * *** *
30687154 ATTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACTGAGGG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGATCGGACCGAGGG
* * * * *
30687218 TTGTGGCAGCAGGATCAACAGCACGCAACGGGGGATGGAGCGATCCCTGGCTTGCGCATTCTACC
65 TTGTGGCAACAGGACCAACAGCACGCAAAGGGGGATGGAGCGATCCCTAGCTTGCGCATTATACC
* * **
30687283 TCTCCGGTCGATTGAGCACCCGCACGCTC
130 TCTCCGGTCGACTCAGCACCCAAACGCTC
* *
30687312 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
30687358 GATACAGAGT
Statistics
Matches: 171, Mismatches: 28, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
157 3 0.02
158 81 0.47
159 84 0.49
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGGACCGAGGGT
TGTGGCAACAGGACCAACAGCACGCAAAGGGGGATGGAGCGATCCCTAGCTTGCGCATTATACCT
CTCCGGTCGACTCAGCACCCAAACGCTC
Found at i:30687339 original size:158 final size:155
Alignment explanation
Indices: 30686856--30687357 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 155
30686846 CCCAGTCTAA
* * * * *
30686856 GCATACCGAGTTCATTCCCA-GTCTAAGATCAGA-CTGAAACGAGGGTTGCGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATC-G-GACGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * *
30686919 CAGCACGTAAGGGGGACCAGGA-TGATCCCCGACTTGTGGATTCTGCCTCTCTGATCGGTTGAGC
63 CAGCACGCAAGGGGGA--TGGAGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGC
30686983 GCCCGCACGC-CTATTTCGTGGGTTGGCTTAG
126 GCCCGCACGCTCT-TTT-GTGGGTTGGCTTAG
* ** * * *
30687014 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAACGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGA-CGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
30687078 AGCACGCAAAGTGGGATCGG-GTCGAT-CCTCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAG
64 AGCACGC-AAGGGGGAT-GGAG-CGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAG
* ** * * *
30687141 CGCTCAAACGCTCATTTCGTGGGTTGACTAAG
125 CGCCCGCACGCTC-TTTTGTGGGTTGGCTTAG
** *
30687173 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGAC-GAGGGTTGTGGCAGCAGGATCGAC
* * *
30687237 AGCACGCAACGGGGGATGGAGCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGATTGAGCAC
64 AGCACGCAA-GGGGGATGGAGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGC
30687302 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
128 CCGCACGCTC-TTTTGTGGGTTGGCTTAG
30687331 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30687358 GATACAGAGT
Statistics
Matches: 271, Mismatches: 55, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
157 7 0.03
158 135 0.50
159 122 0.45
160 6 0.02
161 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAAGGGGGATGGAGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCG
CACGCTCTTTTGTGGGTTGGCTTAG
Found at i:30687369 original size:26 final size:26
Alignment explanation
Indices: 30687333--30687383 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30687323 TGGCTTAGGC
*
30687333 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
30687359 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
30687384 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:30687561 original size:196 final size:186
Alignment explanation
Indices: 30687168--30687785 Score: 530
Period size: 196 Copynumber: 3.3 Consensus size: 186
30687158 CGTGGGTTGA
* * * *
30687168 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA-CTGAGGGTT--GTG-G-CAGC
1 CTAA-GCATACAGAGTTCATTCCCAGTCTAAGA-TCGACCGGATC-AAGGGTTACGTGCGACAGC
** * *** * * *
30687228 AGGATCAACAGCACGCAACGGGGGATGGAGC-GATCCCTGGCTTGCGCATTCTACCTCTCCGGTC
63 AGGATCCGCAGCACGC-A-GAGGGACCAAGCTGATCCCCGGCTTGCGCATTCTGCCTTTCCGGTC
** * * *
30687292 GATTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-T
126 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCACGAT
*
30687353 CTAAGGATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTACGGTAGCAGGACC
1 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GACCGGATCAAGGGTTAC-GT-GC--GA-C
* * * * * * *
30687418 AGCAACAGGAT-CGACAGTATGCAAGGGGGACCGAGTTGATCCTCGGCTTGCGCATTATGCCTTT
60 AG---CAGGATCCG-CAGCACGC-AGAGGGACCAAGCTGATCCCCGGCTTGCGCATTCTGCCTTT
* * *
30687482 CCGGTTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCG
120 CCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCACG
30687547 AT
185 AT
* * *
30687549 CTAAGCATACAGAGTTCATTCACAGTCTAAGATCGGATCGGACCGAA-GG-T---TGCGACAGCA
1 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GACCGGATC-AAGGGTTACGTGCGACAGCA
* * * * *
30687609 GGATCCGTAGCACGCAGAGGGATCAAGCTGATCCCCGACTTACGCATTCTGCCTCTT-CGGCCGG
64 GGATCCGCAGCACGCAGAGGGACCAAGCTGATCCCCGGCTTGCGCATTCTGCCT-TTCCGGTCGG
* * * *
30687673 CTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCTC-AGT
128 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCACGA-T
* *
30687732 CTAAGCATAC-GAAGTTCATTCCCAATCTAAGATCGAACCGGATGAAGGGTTACG
1 CTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCG-ACCGGATCAAGGGTTACG
30687786 ACAGTAGGAT
Statistics
Matches: 352, Mismatches: 53, Indels: 54
0.77 0.12 0.12
Matches are distributed among these distances:
182 5 0.01
183 126 0.36
184 52 0.15
185 7 0.02
187 5 0.01
188 3 0.01
190 2 0.01
191 2 0.01
193 3 0.01
195 14 0.04
196 131 0.37
197 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (186 bp):
CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGACCGGATCAAGGGTTACGTGCGACAGCAGG
ATCCGCAGCACGCAGAGGGACCAAGCTGATCCCCGGCTTGCGCATTCTGCCTTTCCGGTCGGCTG
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCACGAT
Found at i:30687760 original size:26 final size:26
Alignment explanation
Indices: 30687710--30687762 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
30687700 GTTGACTTAG
*
30687710 GCATACAGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCCTCAATCTAA
30687736 GCATAC-GAAGTTCATTCC-CAATCTAA
1 GCATACAG-AGTTCA-TCCTCAATCTAA
30687762 G
1 G
30687763 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAATCTAA
Found at i:30688450 original size:26 final size:26
Alignment explanation
Indices: 30688421--30688473 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30688411 GTTAACTTAG
*
30688421 GCATAC-GAAGTTTATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
30688447 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30688473 G
1 G
30688474 ATCTAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30688642 original size:26 final size:26
Alignment explanation
Indices: 30688604--30688656 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30688594 GTTGGCTTAG
*
30688604 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
* *
30688630 GCATATGGGGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
30688656 G
1 G
30688657 AGTTTGAGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:30689361 original size:25 final size:26
Alignment explanation
Indices: 30689326--30689377 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
30689316 GTTGACTGAG
30689326 GCATACAAAGTTCA-TCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
30689351 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
30689377 G
1 G
30689378 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:30689656 original size:159 final size:158
Alignment explanation
Indices: 30689425--30689854 Score: 441
Period size: 159 Copynumber: 2.7 Consensus size: 158
30689415 AGCACGTAGT
* * * * *
30689425 GGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGTGCCC-ACATGCC
1 GGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGCTGAGCGCCCGA-ACGCT
* *
30689489 CATCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAA-CTGAGG
65 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAACCGAATC-GAGG
** *
30689553 GTTGTGGCAGTGGGACCGACAGCACGCAAAG
128 GTTGTGGCAGCAGGACCGACAACACGCAAAG
* * * * * *
30689584 GTGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTTGGCCGGCTCAGCGCCCGAACGCTC
1 GGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGCTGAGCGCCCGAACGCTC
* ** * ** ** * *
30689649 ATTTCGTGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGT
66 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAACCGAATCGAGGGT
* * *
30689714 TGTGGTAGCAGGATCGACAACACGCAAGG
130 TGTGGCAGCAGGACCGACAACACGCAAAG
* * * * * * * *
30689743 GGGGATCGGGTTGGTCCCCGACTTGTGCATTATACCTCTCCGACCGACTGAGCGCCCGCACGCTC
1 GGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGCTGAGCGCCCGAACGCTC
* * *
30689808 GTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
66 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGC
30689855 ATACGGAGTT
Statistics
Matches: 216, Mismatches: 51, Indels: 8
0.79 0.19 0.03
Matches are distributed among these distances:
158 3 0.01
159 208 0.96
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGCTGAGCGCCCGAACGCTC
ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAACCGAATCGAGGGTT
GTGGCAGCAGGACCGACAACACGCAAAG
Found at i:30689857 original size:26 final size:26
Alignment explanation
Indices: 30689827--30689879 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30689817 GTTGGCTTAG
30689827 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30689853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30689879 G
1 G
30689880 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30690111 original size:25 final size:26
Alignment explanation
Indices: 30690035--30690111 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
30690025 GTTGACTTAG
30690035 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30690061 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30690087 GCATACGAAGTT-ATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30690112 CATCAGACCA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 12 0.24
26 37 0.76
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30690433 original size:26 final size:25
Alignment explanation
Indices: 30690403--30690454 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
30690393 GTTGGCTTAG
*
30690403 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
30690429 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
30690454 G
1 G
30690455 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:30691152 original size:26 final size:26
Alignment explanation
Indices: 30691122--30691174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30691112 GTTGACTTAG
30691122 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
30691148 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30691174 G
1 G
30691175 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30691629 original size:158 final size:155
Alignment explanation
Indices: 30691148--30691640 Score: 499
Period size: 158 Copynumber: 3.1 Consensus size: 155
30691138 CCCAGTCTAA
*
30691148 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GCA
* * * * *
30691213 GCATGCAGAGGGGACCAGGCTGATCCCCGAC-TAGCGCATTCTGCCTCTCTGGCCTGCTGAGTGC
65 GCACGTAGAGGGGACCGGGC-GATCCCCGGCTTA-CGCATTCTGCCTCTCTGGCCGGCTGAGTGC
** * *
30691277 CCGTACGCCCATTTCGTGGGTTGGCTTAG
128 CCACACGCTCGTTTCGTGGGTT-GCTTAG
* ** * * * *
30691306 GCATA-GAGATTTCATT-CCATGTCTAAGCCCTAG-CTGGACTGAGGGTTGTGGCAGCAGGACCT
1 GCATACG-GAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGATC-
* * * * * * *
30691368 GTAGCACGTAAAAAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGGCCGGCTTAG
62 GCAGCACGT-AGAGGGGACCGGG-CGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAG
* *
30691433 CGCCTACACGCTCGTTTCGTGGGTTGACTTAG
125 TGCCCACACGCTCGTTTCGTGGGTTG-CTTAG
* * * *
30691465 GTATACGGAGTTAATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG-CA
* * ***
30691530 GCACGTAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATAGGCTGAGTGCC
65 GCACGTAGAGGGGACCGGG-CGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGTGCC
* *
30691595 CACATGCTCGTTTCGTGGGTTAGCTTAC
129 CACACGCTCGTTTCGTGGGTT-GCTTAG
30691623 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
30691641 ATGTTTAAGC
Statistics
Matches: 267, Mismatches: 56, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 140 0.52
159 117 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGCAG
CACGTAGAGGGGACCGGGCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCA
CACGCTCGTTTCGTGGGTTGCTTAG
Found at i:30691675 original size:26 final size:26
Alignment explanation
Indices: 30691623--30691675 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30691613 GTTAGCTTAC
* *
30691623 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATATCTAA
30691649 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
30691675 G
1 G
30691676 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:30692509 original size:26 final size:26
Alignment explanation
Indices: 30692479--30692531 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30692469 GTTGGCTTAG
30692479 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30692505 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30692531 G
1 G
30692532 ATCAGGCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30692718 original size:26 final size:26
Alignment explanation
Indices: 30692688--30692740 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30692678 GTTGACTTAG
30692688 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30692714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30692740 G
1 G
30692741 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30693049 original size:356 final size:356
Alignment explanation
Indices: 30692591--30693350 Score: 1040
Period size: 356 Copynumber: 2.1 Consensus size: 356
30692581 ACATGCAGGA
* * * *
30692591 GGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGTCTCTCCGATCGGCCTCTCCGGCCGGCTAAG
1 GGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGGCCTCTCCGGCCGGCTAAG
* * * * * *
30692656 CTCTCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
66 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACA
* * * *
30692721 GAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCA
131 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACACA
** * *
30692786 GGGGGGACCGAGCTGATCCCCGACTTGTGCATTCTGCCTCTCCAGCCAGCTGAGCT-CCCGCACG
196 GGGGGGACCGAGCTGATCCCCGACTTACGCATTCTACCTCTCCAGCCAGCTGAG-TGCCCACACG
** *
30692850 TTCGTTTCGTATGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAA-CCCCTAGCCGGACCGA
260 CCCGTTTCGTAGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC-AGCCGGACCGA
* ** *
30692914 GGGTTGTGGCAGCAGGATTGGCAGCACGCAGAG
324 GGGTTGTCGCAGCAGGACCGACAGCACGCAGAG
* * * * * *
30692947 GGGGGCTGGGCTGATCCCTGGCTTACGCATTATGCCTCTCTGATCGGCCTCTCCGATCC-GCTGA
1 GGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGGCCTCTCCG-GCCGGCTAA
30693011 GCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATAC
65 GCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATAC
* *
30693076 AGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACAC
130 AGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACAC
* * * *
30693141 AGGGGGGACCGGGCTGATCCTCGGCTTACGCATTCTACCTTTCCAGCCAGCTGAGTGCCCACACG
195 AGGGGGGACCGAGCTGATCCCCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGTGCCCACACG
* * ** * *
30693206 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAG
260 CCCGTTTCGTAGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
*
30693271 GGTTGTCGCAGCGGGACCGACAGCACGCAGAG
325 GGTTGTCGCAGCAGGACCGACAGCACGCAGAG
** * *
30693303 GGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCTGGTCGGC
1 GGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGGC
30693351 TCAGCCCCCG
Statistics
Matches: 349, Mismatches: 52, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
355 1 0.00
356 342 0.98
357 6 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (356 bp):
GGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGGCCTCTCCGGCCGGCTAAG
CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACA
GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACACA
GGGGGGACCGAGCTGATCCCCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGTGCCCACACGC
CCGTTTCGTAGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
GTTGTCGCAGCAGGACCGACAGCACGCAGAG
Found at i:30693074 original size:26 final size:26
Alignment explanation
Indices: 30693045--30693095 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30693035 TTGACTTAGG
*
30693045 CATACGGAGCTCATCCCCAGTCTAAA
1 CATACAGAGCTCATCCCCAGTCTAAA
* *
30693071 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGCTCATCCCCAGTCTAA
30693096 GATCAGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (26 bp):
CATACAGAGCTCATCCCCAGTCTAAA
Found at i:30693543 original size:26 final size:26
Alignment explanation
Indices: 30693514--30693566 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30693504 GTTGACTTAG
30693514 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* * *
30693540 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
30693566 G
1 G
30693567 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:30693729 original size:183 final size:183
Alignment explanation
Indices: 30693370--30693892 Score: 665
Period size: 183 Copynumber: 2.9 Consensus size: 183
30693360 GAACGCTCGT
* * *
30693370 TTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGGGGTAGCAGGATCGACAGCACGCAGGGGGGA
1 TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGA
* * * * * * * * * *
30693435 CCGGGCTAGTCCCCGGATTACGCATCCTGCCTC-CCTAGTCAGTTGAGTGTCCGCATGCTCGTTT
66 CCGGCCGA-TCCCCAGCTTACGCATTCTGCCTCTCCGA-CCGGTTGAGTGCCCGCACGCTCGTTT
* * *
30693499 CGTGGGTTGACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATATGGAGTTCA
129 CGTGGGTTGGCTTAGGCATACGGAGTTCAACCCCAGTCTAAGCATATGGAGTTCA
* * *
30693554 TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGTGGGGA
1 TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGA
* * *
30693619 CCAGGTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCTCGTTTT
66 CC-GGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCTCGTTTC
*
30693683 GTGGGTTGGCTTAGGCATACGGAGTTCAACCCCAGTCTGAGCATATGGAGTTCA
130 GTGGGTTGGCTTAGGCATACGGAGTTCAACCCCAGTCTAAGCATATGGAGTTCA
* * * * *
30693737 TTCCCAGTCTAAGATCGGACCGGTCCGAGGGTTGCGGTAGCAGGATTGGCAGCATGCAGGGGGGA
1 TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGA
* * * * ** * *
30693802 CGGGCCGATCCCCAGCTTACGCATTCTGCC-CTCCGGCTGGCTGAGCCCCCGCACGCCCGTTTCA
66 CCGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCTCGTTTCG
*
30693866 TGGGTTGGCTTAGGCATAGGGAGTTCA
131 TGGGTTGGCTTAGGCATACGGAGTTCA
30693893 TTCCATGTCT
Statistics
Matches: 296, Mismatches: 40, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
182 62 0.21
183 160 0.54
184 70 0.24
185 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (183 bp):
TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGA
CCGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCTCGTTTCG
TGGGTTGGCTTAGGCATACGGAGTTCAACCCCAGTCTAAGCATATGGAGTTCA
Found at i:30693733 original size:26 final size:26
Alignment explanation
Indices: 30693697--30693746 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
30693687 GTTGGCTTAG
30693697 GCATACGGAGTTCAACCCCAGTCTGA
1 GCATACGGAGTTCAACCCCAGTCTGA
* **
30693723 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCAACCCCAGTCT
30693747 AAGATCGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTGA
Found at i:30694454 original size:158 final size:158
Alignment explanation
Indices: 30694000--30694501 Score: 544
Period size: 158 Copynumber: 3.2 Consensus size: 158
30693990 CCCAGTCTAA
* * * * *
30694000 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTGCGACAGCAAGATCGGC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCAGGATCGGC
* * * *
30694064 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGC
* * *
30694129 CCGCACCCCCCTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** *
30694158 GAATAGGGAGTTCATTCCATA-TCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCAGGACCGG
1 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGG
* * * * *
30694221 CAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCAGCTCAGC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGC
* * * * *
30694286 GCTCGTACGCTCGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
30694317 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * * * * * *
30694382 ACATGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCATCGACCAGCTAAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCC
* *
30694447 CGCACGCTGGTTTTGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
30694475 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
30694502 CATACAGAGT
Statistics
Matches: 277, Mismatches: 60, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 152 0.55
159 123 0.44
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30694511 original size:26 final size:26
Alignment explanation
Indices: 30694475--30694527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30694465 GTTGGCTTAG
*
30694475 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
30694501 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
30694527 G
1 G
30694528 ATATTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:30695206 original size:26 final size:26
Alignment explanation
Indices: 30695170--30695222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30695160 GTTGACTTAG
*
30695170 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30695196 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30695222 G
1 G
30695223 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30695549 original size:26 final size:26
Alignment explanation
Indices: 30695513--30695565 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30695503 GTTGGCTTAG
*
30695513 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30695539 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30695565 G
1 G
30695566 ATTTTGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30696610 original size:26 final size:26
Alignment explanation
Indices: 30696574--30696625 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30696564 TTGACTTAGA
30696574 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
30696600 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
30696626 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:30697637 original size:26 final size:26
Alignment explanation
Indices: 30697601--30697652 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30697591 GTTGACTTAG
30697601 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30697627 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30697653 TATCAAACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30697929 original size:159 final size:159
Alignment explanation
Indices: 30697627--30698131 Score: 532
Period size: 159 Copynumber: 3.2 Consensus size: 159
30697617 CCCAGTCTAA
* * * ** * * * *
30697627 GCATACGGAGTTCATTCCTAGTCTAA-TATCAAACTGGACTGAGGTTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCC-AGTCTAAGCACCAGACCAGACAGAGGGTTGAGGCAGTAGGATCGAC
* * * * * *
30697691 AGCACGCAAAGGGGGATCGGGTCGATCCCTGGCTTGATCATTCTGCCTCGCCGGCCAGCTGAGCG
65 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
30697756 CCCGCGCGCCCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
30697786 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGTAGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCAGACAGAGGGTTGAGGCAGTAGGATCGAC
* * * *
30697850 AGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTCCGGCCGGCTCAGTG
65 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
30697915 CCAGCACGCTCGTTTCGTGGGTTGACTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * **
30697945 GCATACAAAGTTCATTCCCAGTCTAAG-ATCAGACCGGATAGAGGGTTGACACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCAGACAGAGGGTTGAGGCAGTAGGATCGAC
** * * * * *
30698009 AGCACGCAG-GGGGGATCAAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCA
65 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGGCCGGCTGAGCG
**
30698073 CCCGCACGCTTATTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
30698103 GCATACGGAGTTCATCCCCAGTCTAAGCA
1 GCATACGGAGTTCAT-TCCAGTCTAAGCA
30698132 TACGAAGTTC
Statistics
Matches: 283, Mismatches: 57, Indels: 12
0.80 0.16 0.03
Matches are distributed among these distances:
158 98 0.35
159 180 0.64
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCAGTCTAAGCACCAGACCAGACAGAGGGTTGAGGCAGTAGGATCGACA
GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30698608 original size:157 final size:156
Alignment explanation
Indices: 30698129--30698620 Score: 460
Period size: 158 Copynumber: 3.1 Consensus size: 156
30698119 CCCAGTCTAA
* * * ** * *
30698129 GCATACGAAGTTCATTTCCCT-GTCTAAGATCGGATCGGACCAAAGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCA-TT-CCTAGTCTAAGATCAGATCAGACTGAGGGTTACGGTAGTAGGATCGA
* * * * * * **
30698193 CAGCACGCAGGGGGGACCT-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTACGGTCGATTGAGC
64 TAGCACGCA-GGGGGA-CTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGATCGGCTGAGC
*
30698257 ACCCGCACG-TCCGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCT-CGTTTCAT-GGTTGGCTTAG
* ** ** *
30698288 GCATAGGGAGTTCATTCC-ATGTCTAAGCGCCAG-TCAGACTGAGGGTTGTGGTAGT-GAGA-CC
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGATCAGACTGAGGGTTACGGTAGTAG-GATCG
* * * * *
30698349 AGTAGCACGCAGAGGGTACCGGGCCGATCCCTGGCTTGTGGATTATGCCTC-TCTGATCGGCTCA
63 A-TAGCACGCAG-GGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTC-GATCGGCTGA
* *
30698413 GCGCCCGCACGCTCATTTCATGGTTTGACTTAG
125 GCGCCCGCACGCTCGTTTCATGG-TTGGCTTAG
*
30698446 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACTGAGGGTTACGGTAGTAGGATCGATA
* * * * *
30698511 GCACGTAGGGGGACTGGGCCGATCCCGGGCTTGTGCATTTTGCCTCTTCGACCGGCTGAACGCCC
66 GCACGCAGGGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGATCGGCTGAGCGCCC
* *
30698576 ACACGCTCGTTTCGTAGGTTGGCTTAG
131 GCACGCTCGTTTCAT-GGTTGGCTTAG
*
30698603 GCATACGGTGTTCATTCC
1 GCATACGGAGTTCATTCC
30698621 ATGTTTAAGC
Statistics
Matches: 267, Mismatches: 50, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
157 96 0.36
158 152 0.57
159 19 0.07
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACTGAGGGTTACGGTAGTAGGATCGATA
GCACGCAGGGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGATCGGCTGAGCGCCC
GCACGCTCGTTTCATGGTTGGCTTAG
Found at i:30698641 original size:26 final size:26
Alignment explanation
Indices: 30698603--30698655 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30698593 GTTGGCTTAG
* *
30698603 GCATACGGTGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
30698629 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30698655 G
1 G
30698656 GTTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30699104 original size:155 final size:157
Alignment explanation
Indices: 30698696--30699130 Score: 500
Period size: 155 Copynumber: 2.8 Consensus size: 157
30698686 GACCAGCAAC
* *
30698696 AGGATTGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGTATTCTGCCTCTTCGGCC-
1 AGGATCGACAGCACGCAGGGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCG
* * * *
30698760 GCTGAGCACCCCCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAG
* * *
30698825 CCCCAGTCAGACTGAGGGTTGTGGCAGT
130 ACCCAATCAGACTGAGGGTTGTGGCAGA
* * * * * * * *
30698853 GGGACCGGCAACACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCACATTATGCCTCTTCGGCT
1 AGGATCGACAGCACGCAG-GGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC
* * * * * *
30698918 GGCTCAACGCCCGCATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCA-GCCTAA
64 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAA
* * * **
30698982 GATCGAATTAGA-TCGAGGGTTGTGGTGGA
129 GACCCAATCAGACT-GAGGGTTGTGGCAGA
* * * * *
30699011 AGGATCGACAGCACGTAGGGGGGACC-GGCCATCCCCGACTTGCGCATTCTACCTCTCCGGCCGG
1 AGGATCGACAGCACGCAGGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGG
*
30699075 CTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
66 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
30699131 CGTCTAAGCA
Statistics
Matches: 226, Mismatches: 48, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
155 77 0.34
156 2 0.01
157 22 0.10
158 76 0.34
159 49 0.22
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
AGGATCGACAGCACGCAGGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGG
CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGA
CCCAATCAGACTGAGGGTTGTGGCAGA
Found at i:30699148 original size:26 final size:26
Alignment explanation
Indices: 30699112--30699164 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30699102 GTTGGCTTAG
30699112 GCATACGGAGTTCATTC-CACGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
30699138 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
30699164 G
1 G
30699165 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:30700344 original size:158 final size:157
Alignment explanation
Indices: 30699870--30700371 Score: 522
Period size: 158 Copynumber: 3.2 Consensus size: 157
30699860 CCCAATCTAA
* * * *
30699870 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACTGGACCGAGGTTTGCGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAGTAGGATCGACA
* * * *
30699935 GCACGTAGAAGGGACCGAGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
66 GCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
* *
30700000 CGCGCGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTT-GCTTAG
* * ** * * * * *
30700028 GCATAGGGAGATCATTCC-ATGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGTGGGATTGA
1 GCATACGGAGTTCATTCCTA-GTCTAAGATCAAACCGA-ACCGAGGGTTGCGGCAGTAGGATCGA
* * * * * ** * * *
30700091 CAGCATGCAGAAGGGGACCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTCTGGTAGACTCAAT
64 CAGCACGCAG-AGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGT
* *
30700156 GGCCGCACGCTCGTTACGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTG-CTTAG
** * **
30700187 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCGAGGGATGCGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * * **
30700252 GCACGCAGGGGGGATCGAGCTGATCCCCAGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGCACC
66 GCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
30700317 CGCACGCTCGTTTCGTGGGTTAGCTTAG
131 CGCACGCTCGTTTCGTGGGTT-GCTTAG
* *
30700345 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCTAGTCTAAG
30700372 CATACGGAGT
Statistics
Matches: 271, Mismatches: 66, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 145 0.54
159 123 0.45
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGAACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:30700381 original size:26 final size:26
Alignment explanation
Indices: 30700345--30700397 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30700335 GTTAGCTTAG
30700345 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30700371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30700397 G
1 G
30700398 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30700528 original size:183 final size:183
Alignment explanation
Indices: 30700187--30700555 Score: 499
Period size: 183 Copynumber: 2.0 Consensus size: 183
30700177 GTTGACTTAG
* * * *
30700187 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCGAGGGATGCGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGATACGATAGCAGGATCGACA
* *
30700252 GCACGCAGGGGGGATCGAGCTGATCCCCAGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGCACC
66 GCACGCA-GGGGGACCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
*
30700317 CGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATCCCCA-GTCTAA
130 CGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCA-CCCCATGTCTAA
* * * *
30700371 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGATACGATAGCAGGATCGACA
* * * * *
30700436 GCACGTC-GGGGGACCGGGTTGATCCCCGGCTTGCTCATTCTGCCTCTCCGATCGGCTGAGCACC
66 GCACG-CAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
* * * * * *
30700500 CGCACGCTTGTTTTATTGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAA
130 CGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCACCCCATGTCTAA
30700554 GC
1 GC
30700556 CCCAGCTGGA
Statistics
Matches: 161, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
182 4 0.02
183 94 0.58
184 62 0.39
185 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGATACGATAGCAGGATCGACA
GCACGCAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCACCCCATGTCTAA
Found at i:30700878 original size:26 final size:25
Alignment explanation
Indices: 30700842--30700892 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
30700832 GTTGGCTTAG
30700842 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
30700868 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
30700893 AGATTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:30702098 original size:26 final size:26
Alignment explanation
Indices: 30702062--30702114 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30702052 GTTAGCTTAG
30702062 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30702088 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30702114 G
1 G
30702115 ATCGGCCCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30703764 original size:26 final size:26
Alignment explanation
Indices: 30703734--30703785 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30703724 GTTAACTTAG
30703734 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
30703760 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
30703786 AATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:30704299 original size:157 final size:156
Alignment explanation
Indices: 30703900--30704299 Score: 369
Period size: 157 Copynumber: 2.5 Consensus size: 156
30703890 CGCACACCCG
* * *
30703900 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCAAACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CAGACCGAGGGTT
*
30703965 GTGGCAGTG-AGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCTGGCTTGCACATTATGCC
65 GTGGC--TGCAGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCACATTATGCC
* *
30704029 TCCCGATCGGCTTAGCGCCCGAATGCTCA
128 TCCCGAACGGCTTAGCGCCCGAACGCTCA
* * **** * *
30704058 TTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGAATGGATCAGACCAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG-CCCCAGCAGACCGAGGGT
*** * * * * * ** *
30704122 TACAGCAGCAAGA-TGACAGCACGCAG-GGGGGATCGGGTCGATCCTTGGCTTGTGCATTCTGCC
64 TGTGGCTGC-AGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCACATTATGCC
* * * * *
30704185 TCTCTAACTGG-TTAAGTGTCCGCACGCTCA
128 TCCCGAAC-GGCTT-AGCGCCCGAACGCTCA
* * * *
30704215 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCGGATCGAGGGTTG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGACCGAGGGTTG
*
30704280 TGGCTGCAGGACCGGCAGCA
66 TGGCTGCA-GACCGACAGCA
30704300 GGATTGACAG
Statistics
Matches: 185, Mismatches: 48, Indels: 19
0.73 0.19 0.08
Matches are distributed among these distances:
155 1 0.01
156 56 0.30
157 71 0.38
158 56 0.30
159 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (156 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGACCGAGGGTTG
TGGCTGCAGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCACATTATGCCTCC
CGAACGGCTTAGCGCCCGAACGCTCA
Found at i:30704440 original size:26 final size:26
Alignment explanation
Indices: 30704403--30704455 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30704393 GTTGACTTCG
30704403 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
30704429 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30704455 G
1 G
30704456 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30704890 original size:158 final size:157
Alignment explanation
Indices: 30704429--30704921 Score: 501
Period size: 158 Copynumber: 3.1 Consensus size: 157
30704419 CCCAGTCTAA
* *
30704429 GCATACGGAGTTTATTCCCAGTCTAAGAT-TGAACCGGATCGAGGGTTGCGACAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGACAGTAGGATCGGC
* * * *
30704493 AGCACACAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCTTCTCTGGCCGGCTGAGCAC
65 AGCACATAGGGGGGACTGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
30704558 CCGCAGGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * * * **
30704587 GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAG-TCGAACCAAGTGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGATCGAGGGTTGCGACAGTAGGATC-GG
* ** * *
30704650 CAGCACACT-GAGGGGGAGC-GGGCCGATCCCTGGCTTGCGCATGATGCCTCTTCGGCCGGCTCA
64 CAGCACA-TAG-GGGGGA-CTGGGCCGATCCC-CGCTTGCGCATTCTGCCTCTCCGGCCGGCTGA
* * * * *
30704713 GCGCCTGCACACTCCTTTCGTGGGTTGACTTAT
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
30704746 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGACGGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGGCA
* ** *
30704811 GCACGTAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
66 GCACATAGGGGGGACTGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
30704876 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
30704904 GCATACGAAGTTCATTCC
1 GCATACGGAGTTCATTCC
30704922 ATGACTAAGC
Statistics
Matches: 258, Mismatches: 65, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 2 0.01
158 140 0.54
159 112 0.43
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGGCA
GCACATAGGGGGGACTGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30706026 original size:26 final size:26
Alignment explanation
Indices: 30705996--30706048 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30705986 GTTGACTTAG
30705996 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30706022 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30706048 G
1 G
30706049 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30706555 original size:158 final size:158
Alignment explanation
Indices: 30706022--30706841 Score: 442
Period size: 158 Copynumber: 5.2 Consensus size: 158
30706012 CCCAGTCTAA
* * * * * * *
30706022 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAAACTGGACCGAGGGTTG-ATACAGCAGGATCG
1 GCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGGTGCA-GCAGTAGGATCG
** * * * * * * * *
30706084 GTAGCACGCAGGGGGGATCGGGCCGAACCTC-AGCTTGTGCATTCTGCCTCTCCGACCTGCTGAA
64 ACAGCACGCAGGGGGGATCGGGTCGATCCCCGA-CTTGCGCATTATGCCTCTCCG-CCAGTTGAG
* * * * *
30706148 CTTCCCACACGCCCGTTTCATGGGTTGGCTTAG
127 C-ACCCGCACGCTCATTTCGTGGGTTGGCTTAG
** * * * *
30706181 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGATCGAGGGTTGTGACAAC-G--GGATC
1 GCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGG--GTG-CAGCAGTAGGATC
* ** * ** * * * * * *
30706242 GATAGCACGCAGAGGGGGA-CCAGCCGATCCTTGGCTTGCGCATTATGCCTCTCTGGTCGGCTCA
63 GACAGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTC-CGCCAGTTGA
* * * *
30706306 GCGCCCGAACGCTCATTTTGTGGGTTGACTTAG
126 GCACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * * * * *
30706339 ACATATGGGGCTCATTCCCA-ATCTAAG-ATCAGACCGGACTGAGGGTTAC-G-ATGATAGGATT
1 GCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGGTGCAGCA-G-TAGGATC
* ** * *
30706400 GATAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTATGTATTCTGCCTCTCCTGCCAGTTGAG
63 GACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCC-GCCAGTTGAG
* *
30706465 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * **
30706497 GCATACAGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGGTGTGGCAGTAGGA-CGAC
1 GCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGGTGCAGCAGTAGGATCGAC
* * * * * * *
30706560 AGCACGTAGAGGGAGA-CTGGGTCGATCCTCGGCTTGCACATTATGCCTCTCCG--A-TCGACTC
66 AGCACGCAG-GGGGGATC-GGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGCCAGTTGA-GC
* *
30706621 AACGCTCGCATGCTCATTTCGTGGGTTGACTTAG
128 -AC-C-CGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
30706655 GCATACGGAGTTCATT-CATAGTCTAAG-ATCAGACCGGTCTGAGGGTTGCAGCAGCAGGATCGA
1 GCATACAGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGGTGCAGCAGTAGGATCGA
* * * * * * * * *
30706718 CAGCACACAAGGTGGATCGGGTCGATCCCCGACTTGCGCATTTTAG-CTTTCCCACCGGCTGAGT
65 CAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTAT-GCCTCT-CCGCCAGTTGAGC
* * *
30706782 GCCCGTACGCTCATTTCGGGGGTTGGCTTAG
128 ACCCGCACGCTCATTTCGTGGGTTGGCTTAG
30706813 GCATACAGAGTTCATTCCATGTCTAAGCA
1 GCATACAGAGTTCATTCCATGTCTAAGCA
30706842 TACGGAGTTA
Statistics
Matches: 498, Mismatches: 124, Indels: 78
0.71 0.18 0.11
Matches are distributed among these distances:
154 3 0.01
155 4 0.01
156 3 0.01
157 31 0.06
158 330 0.66
159 108 0.22
160 11 0.02
161 3 0.01
162 4 0.01
163 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGGTGCAGCAGTAGGATCGAC
AGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGCCAGTTGAGCACC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:30706607 original size:316 final size:315
Alignment explanation
Indices: 30706023--30706840 Score: 878
Period size: 316 Copynumber: 2.6 Consensus size: 315
30706013 CCAGTCTAAG
* * * * * *
30706023 CATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTT-GATACAGCAGGATCGGTA
1 CATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTCGAT-GAGCAGGATCGATA
* * * * * *
30706087 GCACGCAGGGGGGATCGGGCCGAACCTC-AGCTTGTGCATTCTGCCTCTCCGACCTGCTGAACTT
65 GCACGCAGGGGGGATCGGGTCGATCCCCGA-CTTGTGCATTCTGCCTCTCCG-CCAGCTGAGC-A
* * **
30706151 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCT
* * * * * *
30706216 GGATCGAGGGTTGTGACAACGGGATCGATAGCACGCAGAGGGGGACCAGCCGATCCTTGGCTTGC
192 GGACCGAGGGGTGTGACAACAGGATCGACAGCACGCAGAGGGAGACCAGCCGATCCTCGGCTTGC
* * * * * *
30706281 GCATTATGCCTCTCTGGTCGGCTCAGCGCCCGAACGCTCATTTTGTGGGTTGACTTAGA
257 ACATTATGCCTCTCCGATCGACTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGA
* * * * *
30706340 CATATGGGGCTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTACGATGA-TAGGATTGATA
1 CATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT-CGATGAGCAGGATCGATA
* * *
30706404 GCACGCAGGGGGGATCGGGTCGATCCCCGACTTATGTATTCTGCCTCTCCTGCCAGTTGAGCACC
65 GCACGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCC-GCCAGCTGAGCACC
30706469 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG-TCG
129 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCT-G
* ** * ** *
30706533 GACCGAGGGGTGTGGCAGTAGGA-CGACAGCACGTAGAGGGAGACTGGGTCGATCCTCGGCTTGC
193 GACCGAGGGGTGTGACAACAGGATCGACAGCACGCAGAGGGAGAC-CAGCCGATCCTCGGCTTGC
* * * *
30706597 ACATTATGCCTCTCCGATCGACTCAACGCTCGCATGCTCATTTCGTGGGTTGACTTAGG
257 ACATTATGCCTCTCCGATCGACTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGA
* ** * *
30706656 CATACGGAGTTCATTCATAGTCTAAGATCAGACCGGTCTGAGGGTT-GCA-GCAGCAGGATCGAC
1 CATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTCG-ATG-AGCAGGATCGAT
* * * * * * * * **
30706719 AGCACACAAGGTGGATCGGGTCGATCCCCGACTTGCGCATTTTAG-CTTTCCCACCGGCTGAGTG
64 AGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCT-GCCTCT-CCGCCAGCTGAGCA
* * **
30706783 CCCGTACGCTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
30706841 ATACGGAGTT
Statistics
Matches: 416, Mismatches: 74, Indels: 23
0.81 0.14 0.04
Matches are distributed among these distances:
314 2 0.00
315 21 0.05
316 287 0.69
317 100 0.24
318 3 0.01
319 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (315 bp):
CATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTCGATGAGCAGGATCGATAG
CACGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGCCAGCTGAGCACCCG
CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
CGAGGGGTGTGACAACAGGATCGACAGCACGCAGAGGGAGACCAGCCGATCCTCGGCTTGCACAT
TATGCCTCTCCGATCGACTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGA
Found at i:30706849 original size:26 final size:26
Alignment explanation
Indices: 30706813--30706865 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30706803 GTTGGCTTAG
*
30706813 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTAATTCACA-GTCTAA
*
30706839 GCATACGGAGTTAATTCACAGTCTAA
1 GCATACAGAGTTAATTCACAGTCTAA
30706865 G
1 G
30706866 GTCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCACAGTCTAA
Found at i:30706964 original size:184 final size:183
Alignment explanation
Indices: 30706655--30708558 Score: 1335
Period size: 184 Copynumber: 10.0 Consensus size: 183
30706645 GTTGACTTAG
* * * *
30706655 GCATACGGAGTTCATTCATAGTCTAAGATCAGACCGGTCTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCCGCAGCAGGATCGACA
* * * * * * * * *
30706720 GCACACAAGGTGGATCGGGTCGATCCCCGACTTGCGCATTTTAG-CTTTCCCACCGGCTGAGTGC
65 GCACGCAGGGTGGATCGGGCCGATCCCTGGCTTGCGCATTCT-GCCTCTCCGACCGGCTGAGCGC
* *
30706784 CCGTACGCTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * *
30706839 GCATACGGAGTTAATTCACAGTCTAAGGTCAGACCGGACCGAGGGTCGCCGTAGCAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCCGCAGCAGGATCGACA
* ** * * * *
30706904 GCACGCAGGGTGGACCACGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGACCGGCTGAGTGCC
65 GCACGCAGGGTGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * *
30706969 CGTACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * *
30707023 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAGCAAGACCAGTA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGC--C-GC-AG--C----
30707088 GTAGGATC-AGCAGCACGCAAGGG-GGA-CTGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCC
55 --AGGATCGA-CAGCACGC-AGGGTGGATC-GGGCCGATCCCTGGCTTGCG----C-A----T--
** * * * * * * *
30707150 AATCTGCCTCTCCGGTCGGTTGAGCACCCGTATGCTCGTTTTGTGGGTTGACTTAGGCATACAGA
104 --TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGA
*
30707215 GTTCATACCCAATG--TAA
167 GTTCAT-TCC-ATGTCTAA
* *
30707232 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCCG-CAGCAGGATCGAC
* ** * * * * * * * * *
30707296 AACACGCAGGG-GGAATCGGGTTGGTCCCTGACTTACGCATTCTACCTCTCTGGCCGACTGAACA
64 AGCACGCAGGGTGG-ATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
30707360 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC-GAAGTTCATTCCATGTCTAA
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAA
* * * *
30707416 GCCTACGGAGTTCATTCCCAGTCTACGATC-GAACCAGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCCGCAGCAGGATCGAC
* * * * * * * * * *
30707480 AGCACGCAGGGTGGACCGGGTCAAACCCAGGCTTGCGCATTCTACCTTTCCCACTGGCTGAGTG-
64 AGCACGCAGGGTGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
30707544 CCGCACTCTCATTTC-TGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCGCACGCTCATTTCGT-GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * ** * *
30707599 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAACAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCCGCAGCAGGATCGACA
* * * * *
30707664 GCACGCAGGGTGGATCGGGCTGATCCTTGGCTTAG-GCATTCTGCCTCTCCAATCGACTGAGCGC
65 GCACGCAGGGTGGATCGGGCCGATCCCTGGCTT-GCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
30707728 CCGCACGCT-AGTTTCGTGGGTTTGCTTAGGCACACAGAGTTCATTCCATGTCTAA
129 CCGCACGCTCA-TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * *
30707783 GCATACGGAGTTCATTCCTAGTCTAAGATC-GAACCGGACCGAGGGTTGCGGTAGTAGTA-CCAG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAG-ACCGGACCGAGGGTTGCCGCAGCAGGATCGA-
* * * *
30707846 CAGCACACAAGGGGGGATTGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGATCGGCCTCTC
63 CAGCACGC-AGGGTGGATCGGGCCGATCCCTGGCTTGCGCATTCTG-----CC--T----CTC-C
* * *
30707911 GGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCTCA-
115 -GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTC-CAT
30707975 GTCTAA
178 GTCTAA
* * * * * *
30707981 GCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGACAGAGGGTTG-CGACAGCAAGATCGAT
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCCG-CAGCAGGATCGAC
** * * * * * ** **
30708045 AGCACGCAGGAAGGATCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTTCGACCAACTGAGCTT
64 AGCACGCAGGGTGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
30708110 CCGCACGCTCATTTCGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAA
129 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * *
30708165 GCCTACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTATGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGG---T--T-----G-CC-GCA
* * * * * *
30708230 GCAAGG-TCGGCAGCACGCAGGGGGGA-CTGGGCCGAT-CCTCGGCTTTCACATTTTACCTCTTC
53 GC-AGGATCGACAGCACGCAGGGTGGATC-GGGCCGATCCCT-GGCTTGCGCATTCTGCCTC-T-
* * * * *
30708292 GACCGGCCTTTTCGGCCGACTGAGCGCCCGCACACTTATTTCATGGGTTGACTTAGGCATACAGA
113 --CC-GAC----C-G--G-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGA
* *
30708357 GTTCATCCCCA-ATCTAA
167 GTTCAT-TCCATGTCTAA
* * * *
30708374 GCATATGGAGTTCGTTCCCAGTCTAAGATC-GAACCGGATCGAAGGTTG-CGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCCG-CAGCAGGATCGA
* * * * * **
30708437 CAACTCGTAGAGG-GGATCGAGCCGAT-CCTCGGCTTGCACATTCTGCCTCTCCTG-CCAACTGA
63 CAGCACGCAG-GGTGGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCC-GACCGGCTGA
** * ** *
30708499 GTACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTC-TGTCTAA
125 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
30708557 GC
1 GC
30708559 CCCAGTCGGA
Statistics
Matches: 1377, Mismatches: 232, Indels: 223
0.75 0.13 0.12
Matches are distributed among these distances:
182 6 0.00
183 167 0.12
184 601 0.44
185 37 0.03
186 3 0.00
187 2 0.00
188 4 0.00
189 1 0.00
190 4 0.00
192 5 0.00
193 4 0.00
194 1 0.00
195 5 0.00
196 88 0.06
197 113 0.08
198 115 0.08
199 6 0.00
200 1 0.00
201 3 0.00
203 1 0.00
204 1 0.00
205 5 0.00
206 3 0.00
208 1 0.00
209 190 0.14
210 7 0.01
211 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCCGCAGCAGGATCGACAG
CACGCAGGGTGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:30707026 original size:26 final size:26
Alignment explanation
Indices: 30706997--30707049 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30706987 GTTTGCTTAG
30706997 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
30707023 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30707049 G
1 G
30707050 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30707258 original size:26 final size:26
Alignment explanation
Indices: 30707206--30707258 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30707196 GTTGACTTAG
*
30707206 GCATACAGAGTTCATACCCAATGTAA
1 GCATACAGAGTTCATACCCAATCTAA
* *
30707232 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
30707258 G
1 G
30707259 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:30707992 original size:26 final size:26
Alignment explanation
Indices: 30707955--30708007 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30707945 GTTGACTTAG
30707955 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
30707981 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
30708007 G
1 G
30708008 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:30708153 original size:749 final size:753
Alignment explanation
Indices: 30706658--30708195 Score: 2119
Period size: 749 Copynumber: 2.0 Consensus size: 753
30706648 GACTTAGGCA
** * * *
30706658 TACGGAGTTCATTCATAGTCTAAGATC-AGACCGGTCTGAGGGTTGCAGCAGCAGGATCGACAGC
1 TACGGAGTTCATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGC
* * * * * *
30706722 ACACAAGGTGGATCGGGTCGATCCCCGACTTGCGCATTTTAGCTTTCCCACCGGCTGAGTGCCCG
66 ACACAAGGTGGACCGGGTCAAACCCAGACTTGCGCATTCTACCTTTCCCACCGGCTGAGTGCCCG
*
30706787 TACGCTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTA
131 CACGCTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTA
* * *
30706852 ATTCACAGTCTAAGGTCAGACCGGACCGAGGGTCGCCGTAGCAGGATCGACAGCACGCAGGGTGG
196 ATTCACAGTCTAAGATCAGACCGAACCGAGGGTCGCCGTAACAGGATCGACAGCACGCAGGGTGG
* * * * * *
30706917 ACCACGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGACCGGCTGAGTGCCCGTACGCTCGTTT
261 ACCACGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGACTGAGCGCCCGCACGCTAGTTT
* *
30706982 CGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCT
326 CGTGGGTTTGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCT
* * * *
30707047 AAGATCGGATCGAACCGAGGGTTGCGACAGCAAGACCAGTAGTAGGATCAGCAGCACGCAAGGGG
391 AAGATCGAACCGAACCGAGGGTT-----AGC-AG---AGTAGTAGGACCAGCAGCACACAAGGGG
* * *
30707112 GACTGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCAATCTGCCTCTCCGGTCGGTTGAGCAC
447 GACTGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCAATCGGCCTCTCCGGCCGGCTGAGCAC
* * * *
30707177 CCGTATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATACCCAATGTAAGCATACAGAG
512 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATACCCAATCTAAGCATACAGAG
* * *
30707242 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGG
577 TTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGACAGCAAGATCGACAACACGCAGGA
* * * *
30707307 GGAATCGGGTTGGTCCCTGACTTACGCATTCTACCTCTCTGGCCGACTGAACACCCGCACGCTCA
642 GGAATCGGGTCGGTCCCCGACTTACGCATTCTACCTCTCTGACCAACTGAACACCCGCACGCTCA
30707372 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCC
707 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCC
*
30707419 TACGGAGTTCATTCCCAGTCTACGATCGA-ACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGC
1 TACGGAGTTCATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGC
* * * *
30707483 ACGCAGGGTGGACCGGGTCAAACCCAGGCTTGCGCATTCTACCTTTCCCACTGGCTGAGTG-CCG
66 ACACAAGGTGGACCGGGTCAAACCCAGACTTGCGCATTCTACCTTTCCCACCGGCTGAGTGCCCG
* * * *
30707547 CACTCTCATTTCTGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTC
131 CACGCTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTA
* * **
30707612 ATTC-CTAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAACAGGATCGACAGCACGCAGGGTG
196 ATTCAC-AGTCTAAGATCAGACCGAACCGAGGGTCGCCGTAACAGGATCGACAGCACGCAGGGTG
* ** * ** * *
30707676 GATCGGGCTGATCCTTGGCTTAGGCATTCTGCCTCTCCAATCGACTGAGCGCCCGCACGCTAGTT
260 GACCACGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGACTGAGCGCCCGCACGCTAGTT
30707741 TCGTGGGTTTGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTC
325 TCGTGGGTTTGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTC
* * *
30707806 TAAGATCGAACCGGACCGAGGGTT-GC-G-GTAGTAGTACCAGCAGCACACAAGGGGGGATTGGG
390 TAAGATCGAACCGAACCGAGGGTTAGCAGAGTAGTAGGACCAGCAGCACACAA-GGGGGACTGGG
* * *
30707868 CCGATCCCTGGCTTGCGTATTCTGCCTCTCCGATCGGCCTCT-CGGACCGGCTGAGCGCCCGCAC
454 CCGATCCCTGGCTTGCGTATTCTACCTCTCCAATCGGCCTCTCCGG-CCGGCTGAGCACCCGCAC
*
30707932 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCTCAGTCTAAGCATAC-GAAGTTCA
518 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATACC-CAATCTAAGCATACAG-AGTTCA
* * * *
30707995 TTCCTAGTCTAAGATCGGATCGGACAGAGGGTTGCGACAGCAAGATCGATAGCACGCAGGAAGG-
581 TTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGACAGCAAGATCGACAACACGCAGG-AGGA
* * * **
30708059 ATCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCT-TCGACCAACTGAGCTTCCGCACGCTCATT
645 ATCGGGTCGGTCCCCGACTTACGCATTCTACCTCTCT-GACCAACTGAACACCCGCACGCTCATT
* * *
30708123 TCGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCC
709 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCC
30708168 TACGGAGTTCATTCCCAGTCTAAGATCG
1 TACGGAGTTCATTCCCAGTCTAAGATCG
30708196 GATCGAATCG
Statistics
Matches: 687, Mismatches: 82, Indels: 28
0.86 0.10 0.04
Matches are distributed among these distances:
748 27 0.04
749 293 0.43
750 2 0.00
752 1 0.00
754 2 0.00
759 1 0.00
760 253 0.37
761 107 0.16
762 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (753 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGC
ACACAAGGTGGACCGGGTCAAACCCAGACTTGCGCATTCTACCTTTCCCACCGGCTGAGTGCCCG
CACGCTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTA
ATTCACAGTCTAAGATCAGACCGAACCGAGGGTCGCCGTAACAGGATCGACAGCACGCAGGGTGG
ACCACGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGACTGAGCGCCCGCACGCTAGTTT
CGTGGGTTTGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCT
AAGATCGAACCGAACCGAGGGTTAGCAGAGTAGTAGGACCAGCAGCACACAAGGGGGACTGGGCC
GATCCCTGGCTTGCGTATTCTACCTCTCCAATCGGCCTCTCCGGCCGGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATACCCAATCTAAGCATACAGAGTTCATTCCC
AGTCTAAGATCGGACCGGACAGAGGGTTGCGACAGCAAGATCGACAACACGCAGGAGGAATCGGG
TCGGTCCCCGACTTACGCATTCTACCTCTCTGACCAACTGAACACCCGCACGCTCATTTCATGGG
TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCC
Found at i:30708178 original size:26 final size:26
Alignment explanation
Indices: 30708142--30708191 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
30708132 GGCTTTGGCA
30708142 TACGGAGTTCATT-CCATGTCTAAGCC
1 TACGGAGTTCATTCCCA-GTCTAAGCC
30708168 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
30708192 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:30708481 original size:393 final size:388
Alignment explanation
Indices: 30706772--30708559 Score: 1711
Period size: 393 Copynumber: 4.6 Consensus size: 388
30706762 AGCTTTCCCA
* * * * *
30706772 CCGGCTGAGTGCCCGTACGCTCATTTCGGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
1 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCA-GTCT
* * * * *
30706837 AAGCATACGGAGTTAATTCACAGTCTAAGGTC-AGACCGGACCGAGGGTCGCCG-TAGCAGGATC
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTG-CGACAGCAGGATC
* ** * * *
30706900 GACAGCACGCAGGGTGGACCACGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGACCGGCTGAG
128 GACAGCACGCAGGG-GGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAG
* * * *
30706965 -TGCCCGTACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
192 CT-CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTAC
* ** * *
30707029 GGAGTTCATTCCTAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAGCAAGACCAGTAGTAGGA
256 GGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGACCAGCAG-AGG-
* * * * * *
30707094 TCAGCAGCACGCAAGGGGGACTGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCAATCTGCCT
319 TCGGCAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCCT
*
30707159 CTCCGG
384 -TTCGG
* * * * * * * * *
30707165 TCGGTTGAGCACCCGTATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATACCCAATGT
1 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCAGTCT
* *
30707230 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGA
* ** * * * * * * * * *
30707295 CAACACGCAGGGGGAATCGGGTTGGTCCCTGACTTACGCATTCTACCTCTCTGGCCGACTGAACA
130 CAGCACGCAGGGGG-ATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCT
* *
30707360 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCTACGGA
194 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACGGA
* * * *
30707425 GTTCATTCCCAGTCTACGATC-GAACCAGACCGAGGGTTGC---AGCA-G--CAG--GA--TCGA
259 GTTCATTCCCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGTAGCAGGACCAGCAGAGGTCGG
* * * * * * * *
30707479 CAGCACGCAGGGTGGACCGGGTCAAACCCAGGCTTGCGCATTCTACCT-TTC--CC--AC--T--
323 CAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCCTTTCG
30707535 -
388 G
* * * *
30707535 --GGCTGAGTG-CCGCACTCTCATTTC-TGGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
1 CCGGCTGAGCGCCCGCACGCTCATTTCGT-GGGTTGACTTAGGCATACAGAGTTCATCCCA-GTC
* * * * * ** *
30707596 TAAGCATATGGAGTTCATTCCTAGTCTAAGATC-AGACCGAACTGAGGGTTGTGGTAACAGGATC
64 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGACAGCAGGATC
* ** * *
30707660 GACAGCACGCAGGGTGGATCGGGCTGATCCTTGGCTTAG-GCATTCTGCCTCTCCAATCGACTGA
128 GACAGCACGCAGGG-GGATCGGGCCGATCCCCGGCTT-GCGCATTCTGCCTCTCCGACCGACTGA
* * * * *
30707724 GCGCCCGCACGCT-AGTTTCGTGGGTTTGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATA
191 GCTCCCGCACGCTCA-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTA
* * * * * *
30707788 CGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGTAGTACCAGC--A---
255 CGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGACCAGCAGAGGT
* * * * * *
30707848 --GCA-CAC-AAGGGGGGATTGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGATCGGCCTC
320 CGGCAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCCTT
30707909 TCGG
385 TCGG
*
30707913 ACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTC
1 -CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC-CAGTC
* * * * * *
30707978 TAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGACAGAGGGTTGCGACAGCAAGATCG
64 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCG
* * * * * * *
30708043 ATAGCACGCAGGAAGGATCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTTCGACCAACTGAGC
129 ACAGCACGCAGG-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* *
30708108 TTCCGCACGCTCATTTCGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCTACGG
193 TCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACGG
* **
30708173 AGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTATGGTAGCAGGACCAGCAGCAAGGTC
258 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGACCAGCAG--AGGTC
* * * *
30708238 GGCAGCACGCAGGGGGGACTGGGCCGAT-CCTCGGCTTTCACATTTTACCTCTTCGACCGGCCTT
321 GGCAGCACGCAGGGGGGACTGGGCCGATCCCT-GGCTTGCGCATTCTACCTCTCCGACCGGCC-T
30708302 TTCGG
384 TTCGG
* * * * *
30708307 CCGACTGAGCGCCCGCACACTTATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCT
1 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCAGTCT
* * * *
30708372 AAGCATATGGAGTTCGTTCCCAGTCTAAGATCGAACCGGATCGAAGGTTGCGACAGCAGGATCGA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * * * * * *
30708437 CAACTCGTAGAGGGGATCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCTG-CCAACTGAG-
130 CAGCACGCAG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACCGACTGAGC
* * *
30708500 TACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTC-TGTCTAAGCC
193 T-CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
30708560 CCAGTCGGAT
Statistics
Matches: 1129, Mismatches: 209, Indels: 115
0.78 0.14 0.08
Matches are distributed among these distances:
366 5 0.00
367 228 0.20
368 41 0.04
369 5 0.00
370 5 0.00
371 1 0.00
373 5 0.00
375 1 0.00
376 1 0.00
378 1 0.00
380 2 0.00
381 51 0.05
382 249 0.22
383 4 0.00
384 1 0.00
385 1 0.00
386 1 0.00
387 3 0.00
389 1 0.00
390 4 0.00
391 3 0.00
392 25 0.02
393 479 0.42
394 12 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (388 bp):
CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGAC
AGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCTCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACGGAGT
TCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGACCAGCAGAGGTCGGCAG
CACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCCTTTCGG
Found at i:30709365 original size:26 final size:26
Alignment explanation
Indices: 30709329--30709379 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30709319 GTTGACTTAG
30709329 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
30709355 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
30709380 TGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30711094 original size:26 final size:26
Alignment explanation
Indices: 30711058--30711107 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30711048 TGACTTAGGT
30711058 ATACGGAGTTCATCCCCAGTCTAACC
1 ATACGGAGTTCATCCCCAGTCTAACC
*
30711084 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATCCCCAGTCTAA
30711108 GATTGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAACC
Found at i:30712706 original size:13 final size:13
Alignment explanation
Indices: 30712688--30712714 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
30712678 GCGCATTATG
30712688 CCTCTCCGATCGA
1 CCTCTCCGATCGA
30712701 CCTCTCCGATCGA
1 CCTCTCCGATCGA
30712714 C
1 C
30712715 TAAACGTCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.48, G:0.15, T:0.22
Consensus pattern (13 bp):
CCTCTCCGATCGA
Found at i:30713255 original size:159 final size:155
Alignment explanation
Indices: 30712776--30713277 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 155
30712766 CCCAATCTAA
* *
30712776 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGAT-AGACCGGATCGAGGGTTGCGATAGTAGGATCGAT
* * * * *
30712840 AGCACGTAGGGGGGACCGAGCCGATCCCCAGCTTGCACATTCTGACTCTCCGGTCGGTTGAGTGC
64 AGCACGCAGGGGGGACCG-GTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGG-TAAGTGC
* * * *
30712905 ACGCATG-TCTGCTTCGTGGGTTGGCTTGG
127 CCACATGCTC-GTTTCGTGGGTTGGCTTAG
* * * * * * ** * *
30712934 GCATAGGGAGTTCATTCCATGTCTAAGCCCTTG-CCAGACCGAGGGTTGTGGCAGTGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG--ATAGACCGGATCGAGGGTTGCGATAGTAGGATCGAT
* * * * * * * *
30712998 AGCACACAAGGGGGACTGGGAT-GATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGTGCAGCG
64 AGCACGCAGGGGGGAC-CGG-TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGT-AAGTG
* * * *
30713062 CCCGA-ACGCTCGTTCCGTGGGTTGACTTAT
126 CCC-ACATGCTCGTTTCGTGGGTTGGCTTAG
*
30713092 GCATACGGAGTTCATTCCCA-GTCTAAGATAGGATCGGATCGAGGGTTGCGATAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATA-GACCGGATCGAGGGTTGCGATAGTAGGATCGAT
** *
30713156 AGCACGCAGGGGGGGACCAGGTCGATCCTTAGCTTACGCATTCTGCCTCTCCGG-CTGGCTAAGT
64 AGCACGCA-GGGGGGACC-GGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GG-TAAGT
**
30713220 GCCCACATGCTCGTTTTATGGGTTGGCTTAG
125 GCCCACATGCTCGTTTCGTGGGTTGGCTTAG
30713251 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30713278 CATACGGAGT
Statistics
Matches: 266, Mismatches: 60, Indels: 35
0.74 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 169 0.64
159 92 0.35
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGACCGGATCGAGGGTTGCGATAGTAGGATCGATAG
CACGCAGGGGGGACCGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTAAGTGCCCAC
ATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30713301 original size:26 final size:26
Alignment explanation
Indices: 30713251--30713303 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30713241 GTTGGCTTAG
**
30713251 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
*
30713277 GCATACGGAGTTCATTCGAAATCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
30713303 G
1 G
30713304 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAATCTAA
Found at i:30714328 original size:26 final size:26
Alignment explanation
Indices: 30714299--30714351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30714289 GTTGACTTAG
30714299 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* *
30714325 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
30714351 G
1 G
30714352 ATTGTATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:30715203 original size:26 final size:26
Alignment explanation
Indices: 30715167--30715219 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30715157 GTTGACTTAG
*
30715167 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
30715193 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30715219 G
1 G
30715220 ATCAGACTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30715720 original size:26 final size:26
Alignment explanation
Indices: 30715668--30715720 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30715658 GTTGGCTTAG
* * *
30715668 GCATACGGAGTTTATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
30715694 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
30715720 G
1 G
30715721 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:30715900 original size:26 final size:26
Alignment explanation
Indices: 30715864--30715916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30715854 GTTGACTTAG
*
30715864 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30715890 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30715916 G
1 G
30715917 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30716369 original size:158 final size:156
Alignment explanation
Indices: 30715890--30716390 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 156
30715880 CCCAGTCTAA
* * * *
30715890 GCATACGGAGTTCATTCC-CAGTGTAAGATCGGACCGGACCAAGGGTTATGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCAGA-CGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
30715954 AGCACGCAGGGGGACC-AGGCCGATCCCTAGCTTGTGCATTCTGCCTCTTTGGCCGGTTGAGCAC
64 AGCACGGAGGGGGACCGA-GCCGATCCCCAGCTTGTGCATTATGCCTCTTCGGCCGGCTGAGCGC
* * *
30716018 CCGCACGCCCGTTACGTGGGCTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** ** *
30716047 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGTGGCAGTGGGA-CCAGC
1 GCATACGGAGTTCATTCCACGTCTAAG-ATCAGACGGACCGAGGGTTGTGGCAGCAGGATCGA-C
* * * * * ** * * * * *
30716111 AGTACACAGAGGGGGATCGAGTCGATCCTC-GACTTGCGCATTATAACTCTCCGACCGGGTCAAC
64 AG--CACGGAGGGGGACCGAGCCGATCCCCAG-CTTGTGCATTATGCCTCTTCGGCCGGCTGAGC
* * *
30716175 GCCCGTACGCTCGTTTCATGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
30716206 GCATACGGAGTTCATTCCTA-GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCC-ACGTCTAAGATCAGAC-GGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
30716270 AGCACGGAGGGGGGACCGAGCCGGTCCCCAGCTTATGCATTTTGCCTCTTCGGTCGGCTGAGCGC
64 AGCACGGA-GGGGGACCGAGCCGATCCCCAGCTTGTGCATTATGCCTCTTCGGCCGGCTGAGCGC
*
30716335 CCGCACGCTCGTTTCGTGGATTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
30716364 GCATACGGAGTTCATTCCACGTCTAAG
1 GCATACGGAGTTCATTCCACGTCTAAG
30716391 CATACGAAGT
Statistics
Matches: 265, Mismatches: 66, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 2 0.01
157 51 0.19
158 96 0.36
159 112 0.42
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCACGTCTAAGATCAGACGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGGAGGGGGACCGAGCCGATCCCCAGCTTGTGCATTATGCCTCTTCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30716419 original size:696 final size:697
Alignment explanation
Indices: 30715142--30716461 Score: 1654
Period size: 696 Copynumber: 1.9 Consensus size: 697
30715132 GAGCCCTCGC
30715142 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
* * * * *
30715207 TTCCTAGTCTAAGATCAGACTGTACCGAAGGTTGCGACAGCAGGATCGACAGCACGTAAGTGAGA
66 TTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGACAGCAGGATCGACAGCACGTAAGGGAGA
* * * *
30715272 CCTGACCGATCCTCAACTTGTGCATTCTACCTCTCCGACCGACTGAACGCCTGCACGCCCGTTTC
131 CCAGACCGATCCTCAACTTGTGCATTCTACCTCTCCGACCGACTGAACACCCGCACGCCCGTTAC
* * *
30715337 ATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAACCCCAAGCCAGACCGATGGTTGTGG
196 ATGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAAGCCAGACCGAGGGTTGTGG
* * * * * * **
30715402 CAGCGGGATCGGCAACACGCAGAGTGGGACTAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCC
261 CAGCGGGACCAGCAACACACAGAGGGGGACGAGGCCGATCCTCGACTTGCGCATTATAACTCTCC
* * *
30715467 GATCGCCTCAGCACCCGAATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
326 GACCGCCTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
* * * * * *
30715532 CTCAGATCGAATCAGATCGAGGGTTACGGTAGCAAGATCGACAGCATGCAGGGAGGGATCGGACT
391 CTAAGATCGAATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGGAGGGACCGGACC
* * * *
30715597 GGTCCTCGACTTGCGCATTCTGCCTCTTTGACCGGCTGAGCGCCCACACGCTCATTTATGGGTTG
456 GGTCCCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCACACGCTCATTTATGGATTG
* * *
30715662 GCTTAGGCATACGGAGTTTATTCCATGTGTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
521 GCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
**
30715727 -CTGGACCGAGGGCTGTGGCAGCAGGACCAGCAGCAAGATCGTAGCACATAAGGGGGGACCGAGG
586 TC-GGACCGAGGGCTACGGCAGCAGGACCAGCAGCAAGATCGTAGCACATAAGGGGGGACCGAGG
30715791 GGATCTTCGGCTTGCAAATGCTGCCTCTCCGGTCGGCTGAGCGTCCGT
650 GGATCTTCGGCTTGCAAATGCTGCCTCTCCGGTCGGCTGAGCGTCCGT
* * * *
30715839 ACGCTTGTTTCTTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
* * * * * *
30715904 TTCCCAGTGTAAGATCGGACCGGACC-AAGGGTTATGGCAGCAGGATCGACAGCACG-CAGGGGG
66 TTCCCAGTCTAAGATCAGACCGGACCGAA-GGTTACGACAGCAGGATCGACAGCACGTAAGGGAG
* * * ** * ** *
30715967 ACCAGGCCGATCC-CTAGCTTGTGCATTCTGCCTCTTTGGCCGGTTGAGCACCCGCACGCCCGTT
130 ACCAGACCGATCCTC-AACTTGTGCATTCTACCTCTCCGACCGACTGAACACCCGCACGCCCGTT
* * * **
30716031 ACGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-AGTCGGATTGAGGGTTG
194 ACATGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCCAAGCCAGACCGAGGGTTG
* ** *
30716095 TGGCAGTGGGACCAGCAGTACACAGAGGGGGATCGA-GTCGATCCTCGACTTGCGCATTATAACT
258 TGGCAGCGGGACCAGCAACACACAGAGGGGGA-CGAGGCCGATCCTCGACTTGCGCATTATAACT
** * * *
30716159 CTCCGACCGGGTCAACGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
322 CTCCGACCGCCTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * ** * *
30716224 TAGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGGAGGG-GGGACC
387 CAATCTAAGATC-GAATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGGAGGGACC
* * ** * *
30716287 -GAGCCGGTCCCC-AGCTTATGCATTTTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTC
451 GGA-CCGGTCCCCGA-CTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCACACGCTCATTT-
* *
30716350 GTGGATTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATAC-GAAGTTCATTCCCAGTTT
513 ATGGATTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACAG-AGTTCATTCCCAGTCT
* * * *
30716414 AAGATCGGATCGGATCGAGGGTTACGGTAGCAGGACCAGCAGCAAGAT
577 AAGATCAGATCGGACCGAGGGCTACGGCAGCAGGACCAGCAGCAAGAT
30716462 TGACAGCACG
Statistics
Matches: 522, Mismatches: 91, Indels: 21
0.82 0.14 0.03
Matches are distributed among these distances:
694 3 0.01
695 54 0.10
696 349 0.67
697 116 0.22
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (697 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGACAGCAGGATCGACAGCACGTAAGGGAGA
CCAGACCGATCCTCAACTTGTGCATTCTACCTCTCCGACCGACTGAACACCCGCACGCCCGTTAC
ATGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAAGCCAGACCGAGGGTTGTGG
CAGCGGGACCAGCAACACACAGAGGGGGACGAGGCCGATCCTCGACTTGCGCATTATAACTCTCC
GACCGCCTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
CTAAGATCGAATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGGAGGGACCGGACC
GGTCCCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCCACACGCTCATTTATGGATTG
GCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
TCGGACCGAGGGCTACGGCAGCAGGACCAGCAGCAAGATCGTAGCACATAAGGGGGGACCGAGGG
GATCTTCGGCTTGCAAATGCTGCCTCTCCGGTCGGCTGAGCGTCCGT
Found at i:30717154 original size:26 final size:26
Alignment explanation
Indices: 30717124--30717176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30717114 GTTGACTTAG
30717124 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
30717150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30717176 G
1 G
30717177 ATCAGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30717600 original size:158 final size:158
Alignment explanation
Indices: 30717150--30717651 Score: 457
Period size: 158 Copynumber: 3.2 Consensus size: 158
30717140 CCCAGTCTAA
* * * * *
30717150 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CAAGACCGAGGGTTACGACAGCAGGATTGG
1 GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGA-ACCGAGGGTTATGATAGCAGGATCGA
* * * ** * * * *
30717213 TAGCA-TACAGGAGGGACCGGGTCGAT-CCTCGACTTATGCATTCTGCCTCTCTGGCCGGTTGAG
65 CAGCAGTACAGG-GGGACCGGCT-GATCCCT-GGCTTGCGCATTATGCCTCTCCGGCTGGCTGAG
* *
30717276 CGCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * ** * * * ** *
30717308 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGAACTAATGGCTATGGTAGTGGGA-CCA
1 GCATACGGAGTTCATTCCCATGTCTAAG-ATCAGACCGAACCGAGGGTTATGATAGCAGGATCGA
* * * * * *
30717370 GCAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTAGCTCAG
65 -CAGCA-GTACAGGGGGACC-GGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAG
* *
30717435 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
30717467 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTATGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGAACCGAGGGTTATGATAGCAGGATCGAC
* * * *
30717531 AGCACGTA-TGGGGGACCAGGCTGATCCCTGGCTTGCGCATTTTGCCTCTCCGACTGGCTGAGCA
66 AGCA-GTACAGGGGGACC-GGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCG
*
30717595 CCCGCACGCTTGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
30717625 GCATACGAAGTTC-TTTCCATGTCTAAG
1 GCATACGGAGTTCATTCCCATGTCTAAG
30717652 CATACGGAGT
Statistics
Matches: 268, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.03
158 135 0.50
159 111 0.41
160 14 0.05
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGAACCGAGGGTTATGATAGCAGGATCGAC
AGCAGTACAGGGGGACCGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30717662 original size:26 final size:26
Alignment explanation
Indices: 30717625--30717677 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30717615 GTTGGCTTAG
*
30717625 GCATACGAAGTTC-TTTCCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30717651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30717677 G
1 G
30717678 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30718384 original size:26 final size:26
Alignment explanation
Indices: 30718348--30718400 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30718338 GTTGACTTAG
*
30718348 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
30718374 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30718400 G
1 G
30718401 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30718758 original size:159 final size:158
Alignment explanation
Indices: 30718374--30718770 Score: 367
Period size: 159 Copynumber: 2.5 Consensus size: 158
30718364 CCCAGTCTAA
* * ** *
30718374 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-TCGGATCGAGGGTTACGATAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGGTTACGGCAGCAGGATCGAC
* * * * * * * * *
30718438 AGCACCCATGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTGTCCGACCGGCTGAGCGC
65 AGCACACAGGGGGGACCGGACCGATCCCTGACTTACGCATTATGCCTCTCCGACCGGCTCAACAC
* *
30718503 CCGCACGCCTATTTCTTGGGTTGGCTTAG
130 CCGCACGCCTATTTCATGGGTTGACTTAG
* * * * * * * *** *
30718532 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAGTC-AGACCGAAGGTTATGGCAATGGGA-CTA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATCGAGGGTTACGGCAGCAGGATCGA
* * *
30718594 GCAGCACACAGAGGGGGATC-GAGTCGAT-CCTCGACTTACGCATTATGCCTCTCCGATCGGCTC
64 -CAGCACACAG-GGGGGACCGGA-CCGATCCCT-GACTTACGCATTATGCCTCTCCGACCGGCTC
*
30718657 AACACCTGCACG-CTCATTTCATGGGTTGACTTAG
125 AACACCCGCACGCCT-ATTTCATGGGTTGACTTAG
* *
30718691 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAGGATCGACA
*
30718756 GCACGCAGGGGGGAC
66 GCACACAGGGGGGAC
30718771 TTGGTCGGTC
Statistics
Matches: 182, Mismatches: 46, Indels: 22
0.73 0.18 0.09
Matches are distributed among these distances:
157 5 0.03
158 61 0.34
159 111 0.61
160 5 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAGGATCGACA
GCACACAGGGGGGACCGGACCGATCCCTGACTTACGCATTATGCCTCTCCGACCGGCTCAACACC
CGCACGCCTATTTCATGGGTTGACTTAG
Found at i:30718874 original size:26 final size:26
Alignment explanation
Indices: 30718838--30718890 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30718828 GTTGACTTAG
30718838 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
30718864 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30718890 G
1 G
30718891 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30719223 original size:158 final size:159
Alignment explanation
Indices: 30719059--30719356 Score: 375
Period size: 158 Copynumber: 1.9 Consensus size: 159
30719049 CTCCAGTCGG
** * *** *
30719059 ACTGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGG-CTGATCCCCGGCTTAC
1 ACTGAGGGTTGCAGCAGCAGGACCGACAGCAAAAAGAGGGGGACCGGGTC-GATCCCCAGCTTAC
* * * *
30719123 ACATTATGCCTCTCCGACTGGCTCAGCGCCTGCACGCTCATTTCAT-GGTTGACTTAGGCATACG
65 ACATTATACCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
*
30719187 AAGTTTATTCCCAATCTAAGATCGGACCCA
130 AAGTTCATTCCCAATCTAAGATCGGACCCA
* * * *
30719217 ACTGAGGGTTGCAGTAGCAGGATCGACAGCAAAAAGAGGGGGATCGGGTCGATCCCCAGCTTGCA
1 ACTGAGGGTTGCAGCAGCAGGACCGACAGCAAAAAGAGGGGGACCGGGTCGATCCCCAGCTTACA
* * * * * *
30719282 CATTCTACCTCTCCGACCGGCTAAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGA
66 CATTATACCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
30719347 AGTTCATTCC
131 AGTTCATTCC
30719357 ATGTCTAGGC
Statistics
Matches: 116, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 88 0.76
159 28 0.24
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
ACTGAGGGTTGCAGCAGCAGGACCGACAGCAAAAAGAGGGGGACCGGGTCGATCCCCAGCTTACA
CATTATACCTCTCCGACCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
AGTTCATTCCCAATCTAAGATCGGACCCA
Found at i:30719295 original size:490 final size:490
Alignment explanation
Indices: 30718338--30719296 Score: 1268
Period size: 490 Copynumber: 2.0 Consensus size: 490
30718328 CGTTTCGTGT
*
30718338 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
** * * * *
30718403 CGGATCGGATCGAGGGTTACGATAGCAGGATCGATAGCACCCATGGGGGACCGGACCGATCCCTG
66 CAAACCGAATCGAGGGTTACGACAGCAGGATCGATAGCACCCAGGGGGGACCGGACCGATCCCTG
* * *
30718468 GCTTGCGCATTCTGCCTGTCCGACCGGCTGAGCGCCCGCACGCCTATTTCTTGGGTTGGCTTAGG
131 GCTTGCGCATTCTGCCTGTCCGACCGGCTAAGCGCCCGCACGCCTATTTCATGGGGTGGCTTAGG
** * *
30718533 CATAGGGAGTTCATTCCATGTCTAAGCCTCAGTCAGACCGAAGGTTATGGCAATGGGACTAGCAG
196 CATAGGGAGTAAATTCCATGTCTAAGCCTCAGTCAGACCGAAGGTTATGGCAACGGGACGAGCAG
* * *
30718598 CACACAGAGGGGGATCGAGTCGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAACACC
261 CACACAGAGGGGGACCGAGTCGATCCCCGACTTACACATTATGCCTCTCCGATCGGCTCAACACC
* ***
30718663 TGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGG
326 TGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCCA
* *** * * * *
30718728 ATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACTTGGTCGGTCCCTAGCTCGCGC
391 ATCGAGGGTTGCAGCAGCAGGATCGACAGCAAAAAGGGGGGACTGGGTCGATCCCCAGCTCGCAC
*
30718793 ATTCTGCCTCTCCGGTCGGTTGAGCGCCTGCATGG
456 ATTCTACCTCTCCGGTCGGTTGAGCGCCTGCATGG
* *
30718828 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
* * * *
30718893 CAAACCGAATCGAGGGTTGCGACAGTAGGATCGATAGCACGCAGGGGGGATCGGACCGATCCCTG
66 CAAACCGAATCGAGGGTTACGACAGCAGGATCGATAGCACCCAGGGGGGACCGGACCGATCCCTG
* * * * * *
30718958 GCTTGTGCATTCTGCCTTTCTGGCCGGCTAAGTGCCCGCACGCCTGTTTCATGGGGTGGCTTAGG
131 GCTTGCGCATTCTGCCTGTCCGACCGGCTAAGCGCCCGCACGCCTATTTCATGGGGTGGCTTAGG
* * * * * *
30719023 CATAGGGAGTAAATTCCATGTCTGAG-CTCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGA-C
196 CATAGGGAGTAAATTCCATGTCTAAGCCT-CAGTCAGACCGAAGGTTATGGCAACGGGA-CGAGC
** * * *
30719086 AGCACGTAGAGGGGGACCG-GGCTGATCCCCGGCTTACACATTATGCCTCTCCGA-CTGGCTCAG
259 AGCACACAGAGGGGGACCGAGTC-GATCCCCGACTTACACATTATGCCTCTCCGATC-GGCTCAA
* * *
30719149 CGCCTGCACGCTCATTTCAT-GGTTGACTTAGGCATAC-GAAGTTTATTCCCAATCTAAGATCGG
322 CACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCCAATCTAAGATCAG
*
30719212 ACCCAA-CTGAGGGTTGCAGTAGCAGGATCGACAGCAAAAAGAGGGGGA-TCGGGTCGATCCCCA
386 ACCCAATC-GAGGGTTGCAGCAGCAGGATCGACAGCAAAAAG-GGGGGACT-GGGTCGATCCCCA
*
30719275 GCTTGCACATTCTACCTCTCCG
448 GCTCGCACATTCTACCTCTCCG
30719297 ACCGGCTAAG
Statistics
Matches: 403, Mismatches: 58, Indels: 16
0.84 0.12 0.03
Matches are distributed among these distances:
488 2 0.00
489 75 0.19
490 324 0.80
491 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (490 bp):
GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
CAAACCGAATCGAGGGTTACGACAGCAGGATCGATAGCACCCAGGGGGGACCGGACCGATCCCTG
GCTTGCGCATTCTGCCTGTCCGACCGGCTAAGCGCCCGCACGCCTATTTCATGGGGTGGCTTAGG
CATAGGGAGTAAATTCCATGTCTAAGCCTCAGTCAGACCGAAGGTTATGGCAACGGGACGAGCAG
CACACAGAGGGGGACCGAGTCGATCCCCGACTTACACATTATGCCTCTCCGATCGGCTCAACACC
TGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCCA
ATCGAGGGTTGCAGCAGCAGGATCGACAGCAAAAAGGGGGGACTGGGTCGATCCCCAGCTCGCAC
ATTCTACCTCTCCGGTCGGTTGAGCGCCTGCATGG
Found at i:30719376 original size:26 final size:26
Alignment explanation
Indices: 30719336--30719389 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
30719326 TGGGTTGGCT
*
30719336 TAGGCATACGAAGTTCATTCCATGTC
1 TAGGCATACGAAGTTCATTCCAAGTC
*
30719362 TAGGCATACGGAGTTCATTCCAAGTC
1 TAGGCATACGAAGTTCATTCCAAGTC
30719388 TA
1 TA
30719390 AGATCGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATTCCAAGTC
Found at i:30719932 original size:26 final size:26
Alignment explanation
Indices: 30719890--30719942 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30719880 CTTGGCTTAG
30719890 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30719916 GCATACGGAGCTT-ATTCCCAGTCTAA
1 GCATACGGAG-TTCATTCCCAGTCTAA
30719942 G
1 G
30719943 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30720642 original size:26 final size:26
Alignment explanation
Indices: 30720606--30720658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30720596 GTTGACTTAG
30720606 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30720632 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30720658 G
1 G
30720659 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30721516 original size:26 final size:26
Alignment explanation
Indices: 30721487--30721539 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30721477 GTTTGCTTAG
*
30721487 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
30721513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30721539 G
1 G
30721540 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30721897 original size:26 final size:26
Alignment explanation
Indices: 30721867--30721919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30721857 GTTGACTTAG
*
30721867 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30721893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30721919 G
1 G
30721920 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30724260 original size:18 final size:18
Alignment explanation
Indices: 30724237--30724272 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
30724227 ATTGGTCTTT
30724237 CCAACGGTGTGCTCAAAA
1 CCAACGGTGTGCTCAAAA
30724255 CCAACGGTGTGCTCAAAA
1 CCAACGGTGTGCTCAAAA
30724273 TAAAAGTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (18 bp):
CCAACGGTGTGCTCAAAA
Found at i:30728027 original size:26 final size:26
Alignment explanation
Indices: 30727997--30728049 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30727987 GTTGGCTTAG
30727997 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30728023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30728049 G
1 G
30728050 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30728407 original size:26 final size:26
Alignment explanation
Indices: 30728377--30728429 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30728367 GTTGACTTAG
*
30728377 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
30728403 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30728429 G
1 G
30728430 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30728911 original size:26 final size:26
Alignment explanation
Indices: 30728880--30728932 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30728870 GTTGGCTGAG
30728880 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30728906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30728932 G
1 G
30728933 AGCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30729434 original size:26 final size:26
Alignment explanation
Indices: 30729405--30729457 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30729395 GTTAACTTAG
30729405 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
30729431 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
30729457 G
1 G
30729458 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:30729727 original size:159 final size:158
Alignment explanation
Indices: 30729470--30729934 Score: 488
Period size: 159 Copynumber: 2.9 Consensus size: 158
30729460 TGAACCGGAT
* * ** * * *
30729470 CGAGGGTTGCGGCAGCAGGATC-AGCAGCACGTAGGGGAGATCAGACCGATCCCCGACTTACGGA
1 CGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGGGGGGATCAGGTCGATCCTCGGCTTACGCA
* *
30729534 TTCTGCCTCTTCGGTCGACTAAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATAGGGAG
65 TTCTGCCTCTTCGGTCG-CTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* * ** *
30729599 TTCATTCCATGTGTAAGCCCCAG-TTGGAC
129 TTCATTCCATGTATAAGCACCAGACAGAAC
* * *
30729628 CGAGGGTTGTGGCAGCAGGACCGACAGCATGCAGAGGGGGATCAGGTCGATCCTCGGCTTACGCA
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGATCAGGTCGATCCTCGGCTTACGCA
* * * * * * *
30729693 TTATGCCTCTTCGGTCTGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAG
65 TTCTGCCTCTTCGGTC-GCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* *
30729758 TTCATTCCCA-GTATAAG-ATCGGACAGAAC
129 TTCATT-CCATGTATAAGCACCAGACAGAAC
* * * * * * * **
30729787 TGAGGGTTGCGGCAGAAGGATTGACAGCACGCCGGGGGGACCGGGTCGATCCTCAGCTTGTGCAT
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGTCGATCCTCGGCTTACGCAT
* * * *
30729852 TCTACCTCTCCAGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TCTGCCTCTTCGGTC-GCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
30729917 TCATTCCATGTCTAAGCA
130 TCATTCCATGTATAAGCA
30729935 TACAGAGTTC
Statistics
Matches: 250, Mismatches: 50, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 121 0.48
159 122 0.49
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGGTCGATCCTCGGCTTACGCAT
TCTGCCTCTTCGGTCGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTATAAGCACCAGACAGAAC
Found at i:30729890 original size:158 final size:159
Alignment explanation
Indices: 30729629--30729923 Score: 385
Period size: 158 Copynumber: 1.9 Consensus size: 159
30729619 CAGTTGGACC
* * * * *
30729629 GAGGGTTGTGGCAGCAGGACCGACAGCATGCAGAGGGGGATCAGGTCGATCCTCGGCTTACGCAT
1 GAGGGTTGCGGCAGAAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCTCAGCTTACGCAT
* * * * * *
30729694 TATGCCTCTTCGGTCTGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGT
66 TATACCTCTCCAGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGT
30729759 TCATTCCCAGTATAAGATCGGACAGAACT
131 TCATTCCCAGTATAAGATCGGACAGAACT
** * * **
30729788 GAGGGTTGCGGCAGAAGGATTGACAGCACGCCG-GGGGGACCGGGTCGATCCTCAGCTTGTGCAT
1 GAGGGTTGCGGCAGAAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCTCAGCTTACGCAT
* * * * *
30729852 TCTACCTCTCCAGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TATACCTCTCCAGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGT
30729917 TCATTCC
131 TCATTCC
30729924 ATGTCTAAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
158 87 0.76
159 27 0.24
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GAGGGTTGCGGCAGAAGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCTCAGCTTACGCAT
TATACCTCTCCAGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGT
TCATTCCCAGTATAAGATCGGACAGAACT
Found at i:30729956 original size:26 final size:26
Alignment explanation
Indices: 30729906--30729958 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30729896 GTTGGCTTAG
* *
30729906 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
30729932 GCATACAGAGTTCATTCC-CGATCTAA
1 GCATACAGAGTTCATTCCACG-TCTAA
30729958 G
1 G
30729959 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:30730669 original size:26 final size:26
Alignment explanation
Indices: 30730640--30730692 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30730630 GTTGACTTAG
30730640 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
30730666 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
30730692 G
1 G
30730693 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:30731028 original size:158 final size:158
Alignment explanation
Indices: 30730751--30731040 Score: 375
Period size: 158 Copynumber: 1.8 Consensus size: 158
30730741 GGGACCAGAC
* * * *
30730751 CGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCGACTCAGCACCTGTACGCTCATTTCGTAAGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCACCCGCACGCTCATTTCGTAAGT
* ** *
30730816 TGACTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCAGATCAGACCGTGGGTTGTAGCAGCAG
66 TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTCTAGCAGCAG
30730881 GATCGATAGCACGCAGAGAGGATCGGGT
131 GATCGATAGCACGCAGAGAGGATCGGGT
** * * * * * *
30730909 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCATTTTGTAGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCACCCGCACGCTCATTTCGTAAGT
* * * * *
30730974 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CTGGACCAAGGGTTCTGGCAGCA
66 TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-AGACCAAGGGTTCTAGCAGCA
30731038 GGA
130 GGA
30731041 CCAGCAGCAG
Statistics
Matches: 110, Mismatches: 21, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 109 0.99
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.26
Consensus pattern (158 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCACCCGCACGCTCATTTCGTAAGT
TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTCTAGCAGCAG
GATCGATAGCACGCAGAGAGGATCGGGT
Found at i:30731645 original size:159 final size:158
Alignment explanation
Indices: 30731357--30731855 Score: 456
Period size: 159 Copynumber: 3.1 Consensus size: 158
30731347 CTAAGCGTAT
* * * * * * **
30731357 GGAGTTCATTCC-TAGTCTAAG-ATCAGATC-GAATCGAGGGTTGCGATAGCAGGATCGACGGCA
1 GGAGTTCATTCCAT-GTCTAAGCACCAGACCAG-ACCGAGGGTTACGACAGCAAGATCGACAACA
* * *
30731419 CACAGGAGGGACCGAGCCGATCC-CTGGCTTGCGCATTCTGCCTCTTTGACCGACTGAGCGCCCG
64 CACAGG-GGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGCCCG
* * *
30731483 CACGCCCGTTTCATGGGTTGGCTTAGGCATAG
127 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* ** ** *
30731515 GGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCAGGA-CTGACAACAC
1 GGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTACGACAGCAAGATC-GACAACAC
* * * * * *
30731578 GCAGAAGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGGCCGGCTCAGCGCCAGC
65 ACAG--GGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGC
* * * *
30731643 ACGCTCATTTTGTGGGTTGACTTAAGCATAC
128 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * * * *
30731674 GGAGTTTATTCCCA-GTCTAAG-ATCAGATCGGTCTGAGGGTTACGACAGCAAGATCGATAGCAC
1 GGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAACAC
* * * * *
30731737 ACAGGGAGGGCCTGGGTCGATCCTCGACTTGCGTATTCTGCCTCTCCGGCCGACTGAGCGCCCGC
65 ACAGGG-GGACC-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGC
30731802 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
128 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
30731833 GGAGTTCATTCAATGTCTAAGCA
1 GGAGTTCATTCCATGTCTAAGCA
30731856 TACGGAGTTC
Statistics
Matches: 272, Mismatches: 55, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 57 0.21
159 205 0.75
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAACACA
CAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:30731863 original size:26 final size:25
Alignment explanation
Indices: 30731827--30731878 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
30731817 GTTGGCTTAG
30731827 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAA-GTCTAA
*
30731853 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
30731878 G
1 G
30731879 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:30732883 original size:159 final size:157
Alignment explanation
Indices: 30732520--30733041 Score: 404
Period size: 159 Copynumber: 3.3 Consensus size: 157
30732510 GGCTGAGCGT
* * * *
30732520 CCGCATGCTCATTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAAACC
1 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTAATT-CCAGTCCAAGACCAAACC
* *
30732584 AGACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGT
64 AGACCGAGGGTTGCGACAGTAGGACCGACAGCACGTAGGGGGGACCGAGCCAATCCCCGACTTGT
* * * *
30732649 GCATTCTGCCTCTCTGGCCGGCTGAGCAC
129 GCATTATGCCTCTCCGACCGGCTCAGCAC
* * * * * * * * * * *
30732678 CCGCACAC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTAAATTCCATGTCCAAGCCCCAGCT
1 CCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGAAGTTAATTCCA-GTCCAAGACCAAACC
* ** * * * *
30732742 GGACCGAGGGTT-CTGGTAGTGGGACCGATAGCACGTAGAGTGGGACCGAGCTAATCCCCGACTT
64 AGACCGAGGGTTGC-GACAGTAGGACCGACAGCACGTAG-GGGGGACCGAGCCAATCCCCGACTT
* **
30732806 GTGCATTATGCCTCTCCGACTGGCTCAGTGC
127 GTGCATTATGCCTCTCCGACCGGCTCAGCAC
** * * * * *
30732837 TTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGACCG
1 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTAATT-CCAGTCCAAGACCAAACCA
* * * * * * * ** * * * *
30732902 GACTGAGGGTTGTGGCAGCATGATCGATAGCACAAAGGGGGGGACCGGGTCGATCCCC-AGCTTA
65 GACCGAGGGTTGCGACAGTAGGACCGACAGCACGTA-GGGGGGACCGAGCCAATCCCCGA-CTTG
* * * * * *
30732966 CGCATTCTACCTCTCCGACCGACTGAGCGC
128 TGCATTATGCCTCTCCGACCGGCTCAGCAC
* *
30732996 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTC
1 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTAATTC
30733042 TATGCCTAAG
Statistics
Matches: 280, Mismatches: 74, Indels: 20
0.75 0.20 0.05
Matches are distributed among these distances:
157 5 0.02
158 74 0.26
159 196 0.70
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTAATTCCAGTCCAAGACCAAACCAG
ACCGAGGGTTGCGACAGTAGGACCGACAGCACGTAGGGGGGACCGAGCCAATCCCCGACTTGTGC
ATTATGCCTCTCCGACCGGCTCAGCAC
Found at i:30733264 original size:26 final size:26
Alignment explanation
Indices: 30733234--30733286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30733224 GTTGACTTAG
*
30733234 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30733260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30733286 G
1 G
30733287 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30734802 original size:26 final size:26
Alignment explanation
Indices: 30734773--30734825 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30734763 GTTTGCTTAG
* *
30734773 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
30734799 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30734825 G
1 G
30734826 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30735184 original size:26 final size:26
Alignment explanation
Indices: 30735148--30735200 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30735138 GTTGACTTAG
30735148 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
30735174 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30735200 G
1 G
30735201 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30740900 original size:26 final size:26
Alignment explanation
Indices: 30740869--30740921 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30740859 GTTGGCTTAG
30740869 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
30740895 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30740921 G
1 G
30740922 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30741281 original size:158 final size:158
Alignment explanation
Indices: 30740955--30741271 Score: 413
Period size: 158 Copynumber: 2.0 Consensus size: 158
30740945 GTAGTAGGAC
* ** * *
30740955 CAACAGTAGGATCGGTAACACGTAAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCT
1 CAACAGCAGGATCGACAGCACGTAAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCT
* * *
30741020 TCGATCGGTTGAGCACCTGTACACTCGTGTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCA
66 CCGATCGCTTGAGCACCTGCACACTCGTGTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCA
*
30741085 GTCTAAGATCAGACCGGACCGAGGGTTG
131 GTCTAAGATCAGACCGGACCGAGGCTTG
* ** * *
30741113 CAACAGCAGGATCGACAGCACGTAGGGGGGACTGGGTCGGTCCCCGGCTTGCGCATTCTACCTCT
1 CAACAGCAGGATCGACAGCACGTAAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCT
* * * ** *
30741178 CCGATCAGCTT-AGC-GCTAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
66 CCGATC-GCTTGAGCACCT-GCACACTCGTGTCGTGGGTTAACTTAGGCATACGGAGTTCATCCC
*
30741241 CAGTCTAAGATCTGACCGGACCGAGGCTTG
129 CAGTCTAAGATCAGACCGGACCGAGGCTTG
30741271 C
1 C
30741272 GGTCGCAGGA
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
157 2 0.01
158 131 0.96
159 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CAACAGCAGGATCGACAGCACGTAAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCT
CCGATCGCTTGAGCACCTGCACACTCGTGTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCA
GTCTAAGATCAGACCGGACCGAGGCTTG
Done.