Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 333 of 402
Found at i:30741437 original size:26 final size:26
Alignment explanation
Indices: 30741408--30741458 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30741398 TGACTTAGGC
30741408 ATACGGAGTTCATCCCCAATCTAAGT
1 ATACGGAGTTCATCCCCAATCTAAGT
* *
30741434 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAATCTAAG
30741459 ATCAAATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGT
Found at i:30741733 original size:159 final size:158
Alignment explanation
Indices: 30741434--30741775 Score: 420
Period size: 159 Copynumber: 2.2 Consensus size: 158
30741424 CAATCTAAGT
* * * *
30741434 ATACGGAGTTCATTCCCA-GTCTAAGATCAAATCAGACCGAGGGTTGCAGTAGCAGGATCGGTAG
1 ATACGGAGTTCATT-CCATGTCTAAGACCAAATCAGACCAAGGGTTGCAGCAGCAGGATCGGCAG
* * * **
30741498 CACGCAAGGGGGATCGGGACGATCCTCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCT
65 CACGCAAGGGGGACCGGGACGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGAATGAGCGCCT
*
30741563 GCACGCCCGTTTCGTGGGTTGGCTTAGGG
130 GCACGCCCGTTTCGTGGGTTGGCTTAGGC
* * * * **
30741592 GTACGGAGTTCATTCCATGTCTAAGACCCAGTCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGC
1 ATACGGAGTTCATTCCATGTCTAAGACCAAATCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGC
* *
30741657 ACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCC-GACCGAATGAGCGAC
66 ACGCA-AGGGGGACCGGGACGATCCCCGGCTTGCGCATTCTACCTCTCCAG-CCGAATGAGCG-C
* *
30741721 C-GCACGCTCGTTTCGTGGTTTGGCTTAGGC
128 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGC
** *
30741751 ATACAAAGTTTATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
30741776 CATACAGAGT
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
157 3 0.02
158 57 0.37
159 94 0.60
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
ATACGGAGTTCATTCCATGTCTAAGACCAAATCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGC
ACGCAAGGGGGACCGGGACGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGAATGAGCGCCTG
CACGCCCGTTTCGTGGGTTGGCTTAGGC
Found at i:30741792 original size:26 final size:26
Alignment explanation
Indices: 30741749--30741801 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30741739 TTTGGCTTAG
*
30741749 GCATACAAAGTTTATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
* *
30741775 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
30741801 G
1 G
30741802 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:30742746 original size:159 final size:155
Alignment explanation
Indices: 30742311--30742822 Score: 442
Period size: 159 Copynumber: 3.3 Consensus size: 155
30742301 ACTCACTTCA
* * * *
30742311 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCGAGGGTTGCAG
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTGCGG
* * *
30742375 TAGTAGGATCGACAGCACA-CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTT-
65 TAGTAGGATCGACAGCA-AGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCT-TTC
* * * *
30742438 CGGTCGGCTGAGCACCCGTACGCCCGTTTCG
128 CGGCCGGCT---CAACCGCACGCTCGTTTCG
* * * * * * *
30742469 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGGCTAAGCCCCAG-TCGGACTGAGGGTTGTGG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGTTGCGG
* ** * * * ** * * * *
30742533 CAGCGGGACCGACAACAAGCAGAAGGGGATTGGGTCGATCCTCAGCTTACGCATTATGGCTTTCC
65 TAGTAGGATCGACAGCAAGCAG-GGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTTTCC
30742598 GGCCGGCTCAAAACCTGCACGCTCGTTTCG
129 GGCCGGCTC--AACC-GCACGCTCGTTTCG
* * * *
30742628 TGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGACCGGACCGAACCGAGGGTTACGG
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTGCGG
* * * * * *
30742692 TAGTAGGATCGACAGCATGCAGGGGCGGACCAGGTCGGTCCTCGGCTTGTGCATTCTGCCTCTCT
65 TAGTAGGATCGACAGCAAGCAGGGG-GGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTTTCC
* * * * *
30742757 GACCGGCTC-AGCGCCCGTTCATTTCG
129 GGCCGGCTCAACCGCACGCTCGTTTCG
* *
30742783 TTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
30742823 CATATGGAGT
Statistics
Matches: 275, Mismatches: 67, Indels: 27
0.75 0.18 0.07
Matches are distributed among these distances:
154 3 0.01
155 44 0.16
156 3 0.01
157 4 0.01
158 70 0.25
159 148 0.54
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (155 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTTGCGGT
AGTAGGATCGACAGCAAGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTTTCCGG
CCGGCTCAACCGCACGCTCGTTTCG
Found at i:30742832 original size:26 final size:26
Alignment explanation
Indices: 30742796--30742848 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30742786 GTTGGCTTAG
30742796 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30742822 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30742848 G
1 G
30742849 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30743206 original size:26 final size:26
Alignment explanation
Indices: 30743176--30743228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30743166 GTTGGCTTAG
*
30743176 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
30743202 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
30743228 G
1 G
30743229 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30743510 original size:159 final size:159
Alignment explanation
Indices: 30743340--30743705 Score: 409
Period size: 158 Copynumber: 2.3 Consensus size: 159
30743330 CCCACACACC
* * * * **
30743340 CGTTTCGTGGGTTTGCTTAGGCGTAGGGACTTCATTCCATGTCTAAGCCCCAG-CCGGATTGAAG
1 CGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAAG
* ** * * *
30743404 GTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCCTGGCTTGGGCATTAC-
66 GTTGTAGCAGCCAGATCGACAGCACACAG-GGGGGACCGAGCCGAACCCCGGCTTGCGCATT-CT
* ** *
30743468 GCCTCTCCGGTCGGCTCAGCGCCCGAACGCT
129 CCCTCTCCGACCGACTCAGCGCCCGAACGCT
***
30743499 CGTTTCGTGGG-TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGA
1 CGTTTCGTGGGTTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGA
* * *
30743561 GGGTTGTAGCAGCCAGATCGATAGCACACAGGGGGGACCGGGCCGAACCCCGGCTTGCGCATTCT
64 AGGTTGTAGCAGCCAGATCGACAGCACACAGGGGGGACCGAGCCGAACCCCGGCTTGCGCATTCT
* * * *
30743626 CCCTCTCTGACCGACTGAGCGCCCGTATGCT
129 CCCTCTCCGACCGACTCAGCGCCCGAACGCT
* *
30743657 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30743706 TATGGAGTTC
Statistics
Matches: 172, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 93 0.54
159 72 0.42
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
CGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAAG
GTTGTAGCAGCCAGATCGACAGCACACAGGGGGGACCGAGCCGAACCCCGGCTTGCGCATTCTCC
CTCTCCGACCGACTCAGCGCCCGAACGCT
Found at i:30743727 original size:26 final size:26
Alignment explanation
Indices: 30743677--30743729 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30743667 GTTGGCTTAG
*
30743677 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
30743703 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
30743729 G
1 G
30743730 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:30743909 original size:26 final size:26
Alignment explanation
Indices: 30743873--30743925 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30743863 CTTGGCTTAG
30743873 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30743899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30743925 G
1 G
30743926 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30745062 original size:157 final size:157
Alignment explanation
Indices: 30744612--30745101 Score: 476
Period size: 157 Copynumber: 3.1 Consensus size: 157
30744602 AAGCATATGA
* * * * *
30744612 GTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGC-AGCAGCAGGATTGGCAGCACGCA
1 GTTCATT-CCATGTCTAAAATC-CACTGGACCGAGGGTTGCGA-CAGCAAGATCGACAGCACGCA
* **
30744675 G-GGGAGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCTACTGAGCGCCCGCACG
63 GAGGG-GACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
* * *
30744739 CCCATTTC-AGGGTTGGCTTAGGCATAGGGAT
127 CTCATTTCGTGGGTTGGCTTAGGCATACGG-T
* * * * **
30744770 -TTCATTCCATGTCT-AATTCCTAGTCGGACCGAGGGTTGTGGCAGTGAGATCGACAGCACAG-A
1 GTTCATTCCATGTCTAAAATCC-ACT-GGACCGAGGGTTGCGACAGCAAGATCGACAGCAC-GCA
* * * * * ** *
30744832 GAGAGGGACCGAGTCGATCCCTAACTTACGCATTATGCCTCTTTGG-CTGGCTCAGCGCCCGCAC
63 GAG-GGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCAC
*
30744896 GCTCATTTCGTGGGTTGACTTAGGCATACGGT
126 GCTCATTTCGTGGGTTGGCTTAGGCATACGGT
* * *
30744928 GTTCATTCCCA-GTCTAAAATCCACTGGACTGAGGGTTACGACAACAAGATCGACAGCACGCAGA
1 GTTCATT-CCATGTCTAAAATCCACTGGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGA
* * * * * *
30744992 GGGGATCGGGCCAATCCCCGACTTGCGTATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTC
65 GGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
* * *
30745057 GTTTCGTGGGTTGGCTTAGGCATGCGGA
130 ATTTCGTGGGTTGGCTTAGGCATACGGT
30745085 GTTCATTCCATGTCTAA
1 GTTCATTCCATGTCTAA
30745102 GCATACGGAG
Statistics
Matches: 264, Mismatches: 53, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
156 11 0.04
157 125 0.47
158 88 0.33
159 32 0.12
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
GTTCATTCCATGTCTAAAATCCACTGGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGAG
GGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCA
TTTCGTGGGTTGGCTTAGGCATACGGT
Found at i:30745112 original size:26 final size:26
Alignment explanation
Indices: 30745076--30745128 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30745066 GTTGGCTTAG
*
30745076 GCATGCGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
30745102 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30745128 G
1 G
30745129 ATCCGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30745410 original size:13 final size:13
Alignment explanation
Indices: 30745392--30745416 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30745382 TGCGCATTAT
30745392 GCCTCTCCGGTCA
1 GCCTCTCCGGTCA
30745405 GCCTCTCCGGTC
1 GCCTCTCCGGTC
30745417 GGTTGAGCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCTCTCCGGTCA
Found at i:30746006 original size:26 final size:26
Alignment explanation
Indices: 30745956--30746008 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30745946 GTTAGCTTAG
*
30745956 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
30745982 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
30746008 G
1 G
30746009 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:30746337 original size:171 final size:171
Alignment explanation
Indices: 30745982--30746349 Score: 420
Period size: 171 Copynumber: 2.2 Consensus size: 171
30745972 CCATGTCTAA
* * * * *
30745982 GCATACGGAGTTCATTCCCA-ATCTAA-GATCAGACCGGATCGAGGGTTGTGGCAGCAGGACTAG
1 GCATACGGAGTTCATT-CCATGTCTAAGGACCAGACCGGACCGAGGGTTGTGGCAGCAGAACGAG
* * * * *
30746045 TAGCAGGATCGACAACACATAGGGGGGACCGGGCTGATCCACGTCTTGTGCATTTTGCCTCTCCG
65 CAGCAGGATCGACAACACATAGGGGGGACCGGGCTAATCCACGACTTGAGCATTATGCCTCTCCG
* * * **
30746110 GCCAACTTAGCGCCCGCACGCTCATTTTGTGGGTTGGGTTAG
130 GCCAACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
*
30746152 GCATACGGAGTTCATTCCATGTCTAAGGCCCA-ACCGGACCGAGGGTTGTGGCAGCAGAATCGA-
1 GCATACGGAGTTCATTCCATGTCTAAGGACCAGACCGGACCGAGGGTTGTGGCAGCAGAA-CGAG
* ** * * * * *
30746215 CAGCGGGATCGACTGCACGTAGAGGGGGACCTGGCTAATCCCCGACTTGAGTATTATGCCTCTTC
65 CAGCAGGATCGACAACACATAG-GGGGGACCGGGCTAATCCACGACTTGAGCATTATGCCTCTCC
** * *
30746280 GGCCGGCTGAGCACCTGCACGCTCCTTTCGTGGGTTGACTTAG
129 GGCCAACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
*
30746323 GGATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30746350 CAAACGGAGT
Statistics
Matches: 165, Mismatches: 29, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
169 3 0.02
170 63 0.38
171 99 0.60
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCATGTCTAAGGACCAGACCGGACCGAGGGTTGTGGCAGCAGAACGAGC
AGCAGGATCGACAACACATAGGGGGGACCGGGCTAATCCACGACTTGAGCATTATGCCTCTCCGG
CCAACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:30753004 original size:26 final size:26
Alignment explanation
Indices: 30752968--30753020 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30752958 GTTGACTTAG
30752968 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
30752994 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30753020 G
1 G
30753021 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30753466 original size:157 final size:156
Alignment explanation
Indices: 30752994--30753493 Score: 608
Period size: 157 Copynumber: 3.2 Consensus size: 156
30752984 CCTAGTCTAA
* ** * * *
30752994 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGGTCGAGGGTTACGGCAGCAGTATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
30753058 AGCACGCAGGGGGACAAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 AGCACGCAGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
30753123 CGTACGCTCGTTTCATGGGTTGGCTTAG
129 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * **
30753151 GCATAGGGAGTTCATTCCATGTCTAAGCTCCAACTGGACTGAGGGTTGTGGCAGTGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
30753216 GCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCAC
66 GCACGC--AGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
30753281 CCGTACACTCATTTTGTGGGTTGACTTAG
128 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * *
30753310 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* **
30753374 AGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 AGCACGCAGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
30753439 TGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGTACGCTCGTTTCGTGGGTTGGCTTAG
30753467 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30753494 CATACGGAGT
Statistics
Matches: 284, Mismatches: 53, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
156 6 0.02
157 147 0.52
159 127 0.45
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:30753503 original size:26 final size:26
Alignment explanation
Indices: 30753467--30753519 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30753457 GTTGGCTTAG
30753467 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30753493 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30753519 G
1 G
30753520 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30754431 original size:302 final size:301
Alignment explanation
Indices: 30754094--30754662 Score: 799
Period size: 302 Copynumber: 1.9 Consensus size: 301
30754084 AGATCTGCAA
* * * *
30754094 CACGCAGGGGGACCGGGCCGATCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGGCTCGCA
1 CACGCAGGGGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGG-TAAGGCCCGCA
* * *
30754159 TGCCCATTT-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGA
65 CGCCCATTTCTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGA
** * *
30754223 GGGTTGTGGCAGTGGGAC-CG-AGCACGCAGAAGGGGA-TCGGG-CGATCCCCGGCTTGCGTATT
129 GGGTTGTGGCAGCAGGACTCGCAGCACGCAGAAGGGGACT-GGGCCGATCCCCGGCTTACGCATT
* * *
30754284 ATGCCTCTTCAGCCGGTCAGCGCCCGCGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCAT
193 ATGCCTC-TCAGCC--TCAGCACCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
30754349 TCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTCGGATCG
255 CCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTCGGATCG
30754396 CACGCAGAGGGGA-CGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTAAGGCCCGCA
1 CACGCAG-GGGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTAAGGCCCGCA
* * *
30754460 CGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACGA
65 CGCCCATTTC-TAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACGA
* * * *
30754525 GGGTTGTGGCAGCAGGACTGGCAGCACGTAGAGGGGGACTGGGCCGATCCTCGGCTTACGCATTA
129 GGGTTGTGGCAGCAGGACTCGCAGCACGCAGAAGGGGACTGGGCCGATCCCCGGCTTACGCATTA
* *
30754590 TGCCTCTCGGTCTCAGCACCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
194 TGCCTCTCAGCCTCAGCACCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
30754655 AGTCTAAG
259 AGTCTAAG
30754663 CATACGGAGT
Statistics
Matches: 235, Mismatches: 25, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
301 15 0.06
302 120 0.51
303 54 0.23
304 21 0.09
305 25 0.11
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (301 bp):
CACGCAGGGGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTAAGGCCCGCAC
GCCCATTTCTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACGAGG
GTTGTGGCAGCAGGACTCGCAGCACGCAGAAGGGGACTGGGCCGATCCCCGGCTTACGCATTATG
CCTCTCAGCCTCAGCACCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
TCTAAGATCAGATCGGACCGAGGGTTGCGACAGTCGGATCG
Found at i:30754642 original size:152 final size:152
Alignment explanation
Indices: 30753935--30754663 Score: 649
Period size: 153 Copynumber: 4.8 Consensus size: 152
30753925 GTAGGATCGA
* * * * * * *
30753935 CAGCATGCAGA-GGGGAC-GGGTCGATCCCGGCATGCGCATTCTACCTCTCCGGTCGACTGAGCA
1 CAGCACGCAGAGGGGGACTGGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGGTCG--TCAG-G
* * * *
30753998 CCCTACACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
63 CCC--CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
30754063 CAGA-CGAGGGTTGTGGTAGCGAGATCTG
126 CGGACCGAGGGTTGTGGCAGCG-GA-CTG
* * * *
30754091 CAACACGC--AGGGGGACCGGGCCGATCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGGC
1 CAGCACGCAGAGGGGGACTGGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGGTC-G-TCAGGC
* * * * *
30754154 TCGCATGCCCATTT--TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
64 -CCCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * *
30754217 GATCGAGGGTTGTGGCAGTGGGACCG
128 GACCGAGGGTTGTGGCAG-CGGACTG
* * * * *
30754243 -AGCACGCAGAAGGGGA-TCGGG-CGATCCCCGGCTTGCGTATTATGCCTCTTCAGCCGGTCA-G
1 CAGCACGCAGAGGGGGACT-GGGCCGAT-CCCGGCTTGCGCATTATGCCTCTCCGGTC-GTCAGG
* * * **
30754304 CGCCCGCGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGA
63 C-CCCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-
* * *
30754367 TCGGACCGAGGGTTGCGACAGTCGGA-T-
125 CCGGACCGAGGGTTGTGGCAG-CGGACTG
* * *
30754394 C-GCACGCAGA-GGGGAC-GGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTAAGGCC
1 CAGCACGCAGAGGGGGACTGGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGGTC-GTCAGGCC
* *
30754456 CGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
65 C-CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
30754521 A-CGAGGGTTGTGGCAGCAGGACTGG
129 ACCGAGGGTTGTGGCAGC-GGACT-G
* *
30754546 CAGCACGTAGAGGGGGACTGGGCCGATCCTCGGCTTACGCATTATGCCTCT-CGGTC-TCA-GCA
1 CAGCACGCAGAGGGGGACTGGGCCGATCC-CGGCTTGCGCATTATGCCTCTCCGGTCGTCAGGC-
* *
30754608 CCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
64 CCCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
30754664 ATACGGAGTT
Statistics
Matches: 478, Mismatches: 64, Indels: 66
0.79 0.11 0.11
Matches are distributed among these distances:
148 1 0.00
149 48 0.10
150 64 0.13
151 29 0.06
152 112 0.23
153 122 0.26
154 16 0.03
155 22 0.05
156 63 0.13
157 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (152 bp):
CAGCACGCAGAGGGGGACTGGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGGTCGTCAGGCCC
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
CGAGGGTTGTGGCAGCGGACTG
Found at i:30754672 original size:26 final size:26
Alignment explanation
Indices: 30754636--30754688 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30754626 GTTGACTTAG
30754636 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30754662 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30754688 G
1 G
30754689 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30762543 original size:26 final size:26
Alignment explanation
Indices: 30762514--30762565 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30762504 GTTGACTTAG
30762514 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30762540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30762566 TATCAGATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30762735 original size:26 final size:26
Alignment explanation
Indices: 30762699--30762777 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
30762689 GTTGGCTTAG
30762699 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30762725 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
30762751 GCATATGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
30762777 G
1 G
30762778 ATTTTGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 1 0.02
26 50 0.98
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30762868 original size:11 final size:11
Alignment explanation
Indices: 30762854--30762879 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30762844 CACCATCATC
30762854 GGAGCATCGTT
1 GGAGCATCGTT
30762865 GGAGCATCGTT
1 GGAGCATCGTT
30762876 GGAG
1 GGAG
30762880 AGCCTAACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.42, T:0.23
Consensus pattern (11 bp):
GGAGCATCGTT
Found at i:30763489 original size:26 final size:26
Alignment explanation
Indices: 30763460--30763511 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30763450 GTTGACTTAG
*
30763460 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
*
30763486 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
30763512 TATCAGATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:30763681 original size:26 final size:26
Alignment explanation
Indices: 30763645--30763723 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
30763635 GTTGGCTTAG
*
30763645 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
30763671 GCATATAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
30763697 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
30763723 G
1 G
30763724 ATTTTGAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:30764325 original size:924 final size:927
Alignment explanation
Indices: 30761773--30764619 Score: 4381
Period size: 946 Copynumber: 3.0 Consensus size: 927
30761763 GGCTTTAGGC
*
30761773 CATACGGAAGTTCCATTCCATGTCTAAGCATACGGAGTTCATAT-CTAGTCTAAGATTTTGAGCC
1 CATACGG-AGTT-CATTCCATGTCTAAGCATACGGAGTTCAT-TCCCAGTCTAAGATTTTGAGCC
* * * *
30761837 ACGGTGCGCATACTGAGGTCGGCGCATGTGTTGGTGTCACATTTTTTTCACCCTGGGCACCATCG
63 ACGGTGCGCATACTGAGCTCGG-GCATGTGTTGGTGCCGCATTTTTTTCGCCC-GGG-------G
* * **
30761902 TCGAGCCATCGTTGGAGCAATCGCCGGAGAGTCCTAACCGACGGCATTGGGGGTTCCGACGATTG
119 -C---TCATC------GC-ATCGTCGGAGAG-CCTAACCGACGGCATTGGGGGTTCCGGTGATT-
*
30761967 GGGGGGCCCGACGGGGGTGTGCGTACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTG
171 GGGGGG-CCGA-GGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
30762032 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTATAG
234 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAG
30762097 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATC
299 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATC
* * *
30762162 TTCTCCACTTTGAGTTTTTAATTGAATTGTTTTATGCATGCCAACAAAAATACAGGGATCACCAC
364 TTCTCCACTTCGAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTC
30762227 TACCAATTTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTT
429 TACCAATTTTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTT
* *
30762292 CAAAAATCATAAAAAATAGAAAACGGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGA
494 CAAAAATCATGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGA
30762357 ACATTGTATGAATTTACAAGCCATAAAAATGGCATTCGTATGGCAGAAATATGAAGACGTGCTTG
559 ACATTGTATGAATTTACAAGCCATAAAAATGGCATTCGTATGGCAGAAATATGAAGACGTGCTTG
* *
30762422 AACCGACCTACCACCCGTTCGATCCCTGGCTTGCGCATCCTGCCTTTCTGGTCGGCTAAGCGCAC
624 AACCCACCTACCACCCGTTCGATCCCTGGCTTGCGCATCCTGCCTTTCTGGTCGGCTAAGCGCCC
30762487 GTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
689 GTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
*
30762552 CATTCCCAGTCTAATATCAGATTGGACTACATGTTGTGGCAGCAAGATCGACAGCACGTAGGGGT
754 CATTCCCAGTCTAATATCAGATTGGACTACATGTTGTGGCAGCAGGATCGACAGCACGTAGGGGT
*
30762617 AGATCGGGCTGATCCTCGGCTTGCCCATTCTGCCGCTCCGATCGGCTGAGCACCCACACGCTCGT
819 AGATCGGGCTGATCCTCGGCTTGCCCATTCTGCCTCTCCGATCGGCTGAGCACCCACACGCTCGT
30762682 TTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
884 TTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
30762726 CATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATTTTGAGCCACG
1 CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACG
* *
30762791 GTGTGCATACTGAGCTCGGGCATGTGTTGGTGCCGTATTTTTTTCGCCCGGGGCACCATCATCGG
66 GTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCCCGGGG---C-TCATC--
* *
30762856 AGCATCGTTGGAGCATCGTTGGAGAGCCTAACCGACGGCATTGGGGGTTCCAGTGATTGAGGGGC
125 -GCATC------G--TC---GGAGAGCCTAACCGACGGCATTGGGGGTTCCGGTGATTGGGGGGC
30762921 CGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
178 CGAGGGGGTGTGCGTACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
30762986 CCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTG
243 -CCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
* *
30763051 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACAGTCGCAAAATCTTCTCCAC
307 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCAC
*
30763116 TTCGAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAAAT
372 TTCGAGTTTTTAATTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAATT
* **
30763181 TTAGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAAAGACAAAAAGTTTCAAAAATC
437 TTGGGGACAAACCTCTTTCTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATC
*
30763246 GTGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTA
502 ATGAAAAATAGAAAACAGGTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTA
*
30763311 TGAATTTACAAGCCATAAAAATGGCATTCGTATGGCAGAAATATGAAGACGTGCTTGAACCTACC
567 TGAATTTACAAGCCATAAAAATGGCATTCGTATGGCAGAAATATGAAGACGTGCTTGAACCCACC
30763376 TACCACCCGTTCGATCCCTGGCTTGCGCATCCTGCCTTTCTGGTCGGCTAAGCGCCCGTACGCTC
632 TACCACCCGTTCGATCCCTGGCTTGCGCATCCTGCCTTTCTGGTCGGCTAAGCGCCCGTACGCTC
*
30763441 GTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCA
697 GTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
30763506 GTCTAATATCAGATTGGACTACATGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGG
762 GTCTAATATCAGATTGGACTACATGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGG
30763571 CTGATCCTCGGCTTGCCCATTCTGCCTCTCCGATCGGCTGAGCACCCACACGCTCGTTTTGTGGG
827 CTGATCCTCGGCTTGCCCATTCTGCCTCTCCGATCGGCTGAGCACCCACACGCTCGTTTTGTGGG
30763636 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
892 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
**
30763672 CATATAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACG
1 CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACG
*
30763737 GTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCTCGGGG-T-A-C-CATCG
66 GTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCCCGGGGCTCATCGCATCG
* *
30763798 TCGGAGAGCCTAACTGACGGCATTGGGGGTTCCGGTGATTGGGAGGGCCGAGGGGGTGTGCATAC
131 TCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGGTGATTGGG-GGGCCGAGGGGGTGTGCGTAC
* *
30763863 ATGATGTACAATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGA
195 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
30763928 GAACTCGCACCTCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
260 GAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
30763993 TCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCGAGTTTTTAATTGAA
325 TCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCGAGTTTTTAATTGAA
30764058 TTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAATTTTGGGGACAAACCTCTTT
390 TTGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAATTTTGGGGACAAACCTCTTT
* *
30764123 CTAAAAAAATTTTAAAATATCTCGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAACAG
455 CTAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAG
*
30764188 GTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGAAACATTGTATGAATTTACAAGCCATAA
520 GTCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTATGAATTTACAAGCCATAA
* * *
30764253 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGAT-CC
585 AAATGGCATTCGTATGGCAGAAATATGAAGACGTGCTTGAACCCACCTACCACCCGTTCGATCCC
* * *
30764317 TCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTAAGTGCCCGCACGCTCGTTCCGTGGGTTGACTT
650 T-GGCTTGCGCATCCTGCCTTTCTGGTCGGCTAAGCGCCCGTACGCTCGTTCCGTGGGTTGACTT
* * *
30764382 AGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGACTGG
714 AGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATTGG
* * ** * * ** * * * **
30764447 AC--CGAGGGATACGACAGTAGGATCG-GTGCATGCAGGGG-GGGCCAGGGC-GATCC-CTGGCT
779 ACTAC-A-TGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATC-GGGCTGATCCTC-GGCT
*** ** * * * *
30764506 TATGCATTCTGAGTCTCCGGTCGG-TAGAGCACCCGCACGCTCGTTTCGTGGATTGGCTTAGGCA
840 TGCCCATTCTGCCTCTCCGATCGGCT-GAGCACCCACACGCTCGTTTTGTGGGTTGGCTTAGGCA
*
30764570 TACAGAGTTCATTCCATGTCTAAG
904 TACGGAGTTCATTCCATGTCTAAG
30764594 CATACGGAGTTCATTCCCA-GTCTAAG
1 CATACGGAGTTCATT-CCATGTCTAAG
30764620 ATTGGACAGG
Statistics
Matches: 1773, Mismatches: 98, Indels: 77
0.91 0.05 0.04
Matches are distributed among these distances:
921 2 0.00
922 108 0.06
923 20 0.01
924 561 0.32
925 66 0.04
927 2 0.00
929 1 0.00
935 4 0.00
938 3 0.00
939 6 0.00
940 1 0.00
941 1 0.00
942 5 0.00
944 2 0.00
945 61 0.03
946 781 0.44
947 5 0.00
948 29 0.02
949 9 0.01
950 27 0.02
951 68 0.04
952 4 0.00
953 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (927 bp):
CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACG
GTGCGCATACTGAGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCCCGGGGCTCATCGCATCG
TCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGGTGATTGGGGGGCCGAGGGGGTGTGCGTACA
TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCGAGTTTTTAATTGAAT
TGTTTTGTGCATGCCAACAAAAATACAGGGATCACCTCTACCAATTTTGGGGACAAACCTCTTTC
TAAAAAAATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAGG
TCACCTTGCCACAAAACTTCACATGAAGGCTTAGGGGAACATTGTATGAATTTACAAGCCATAAA
AATGGCATTCGTATGGCAGAAATATGAAGACGTGCTTGAACCCACCTACCACCCGTTCGATCCCT
GGCTTGCGCATCCTGCCTTTCTGGTCGGCTAAGCGCCCGTACGCTCGTTCCGTGGGTTGACTTAG
GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATTGGAC
TACATGTTGTGGCAGCAGGATCGACAGCACGTAGGGGTAGATCGGGCTGATCCTCGGCTTGCCCA
TTCTGCCTCTCCGATCGGCTGAGCACCCACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAG
Found at i:30764413 original size:26 final size:26
Alignment explanation
Indices: 30764384--30764436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30764374 GTTGACTTAG
*
30764384 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
*
30764410 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
30764436 G
1 G
30764437 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:30764603 original size:26 final size:26
Alignment explanation
Indices: 30764567--30764619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30764557 ATTGGCTTAG
30764567 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
30764593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30764619 G
1 G
30764620 ATTGGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30765097 original size:159 final size:158
Alignment explanation
Indices: 30764929--30765279 Score: 393
Period size: 159 Copynumber: 2.2 Consensus size: 158
30764919 CACATACCCA
* * *
30764929 TTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTT
* * * * * * *
30764994 GTGGTAGA-GGGACCGACAGCACGTAGAGGGGGATCAGGCCGATCCCC-GACTTGCCCATTCTGC
66 ATGGCA-ATAGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGACTTG--CATTATGC
* * * *
30765057 CTCTTCGATCGGCTAAGC-ACCCGCACGCTCG
128 CTCTCCGACCGACTAAGCGA-CCGAACGCTCG
* * * * *
30765088 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGTCGCAGCCGGATCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTT
* * * * **
30765153 ATGGCAATAGGACCGGCAGCATGCAGAGGGGGACCGGGTCAATCCCCGGTTTTGCATTATGCCTC
66 ATGGCAATAGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGACTTGCATTATGCCTC
*
30765218 TCCGACCGACTCAGCGACCGAACGCTCG
131 TCCGACCGACTAAGCGACCGAACGCTCG
* *
30765246 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
30765280 TCTTGGCCCT
Statistics
Matches: 160, Mismatches: 29, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
158 63 0.39
159 93 0.58
160 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTT
ATGGCAATAGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGACTTGCATTATGCCTC
TCCGACCGACTAAGCGACCGAACGCTCG
Found at i:30766732 original size:26 final size:26
Alignment explanation
Indices: 30766694--30766746 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30766684 GGCTTAAACT
* *
30766694 CTTAGACTCGGAATGAACTCTGTATG
1 CTTAGACTCGGAAAGAACTCCGTATG
30766720 CTTAGACGT-GGAAAGAACTCCGTATG
1 CTTAGAC-TCGGAAAGAACTCCGTATG
30766746 C
1 C
30766747 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAAAGAACTCCGTATG
Found at i:30767222 original size:158 final size:156
Alignment explanation
Indices: 30766720--30767222 Score: 415
Period size: 159 Copynumber: 3.2 Consensus size: 156
30766710 ACTCTGTATG
* * * * * *
30766720 CTTAGACGT-GGAAAGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGAGCGCTC-G
1 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * **
30766783 ACC-GACTGCAGAGGCAGAATGCGCAAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTATCGA
65 -CCAGTC-GAAGAGGCAGAATGCGC-AAGCTGGGGATCGGCC-GGTCCCCCCTGCGTGCTGCCGA
* *
30766847 TCCTGCTGCTGCAACCCTCTGTCCGGTCTGAT
126 TCCTGCTGCTGCAACCCTCGGT-CGGTCCGAT
* * * *
30766879 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
* ** ** * * *
30766944 CAGTCGAAGAGGCATAATGCGCAAATTAAGGATCAGCCCGGTCCCCCTCTGCGTTCTGCCGGTCC
66 CAGTCGAAGAGGCAGAATGCGCAAGCTGGGGATC-GGCCGGTCCCCC-CTGCGTGCTGCCGATCC
* * * * * * **
30767009 CGCTACTGTAACCCTCGGTCTGACTGGGG
129 TGCTGCTGCAACCCTCGGTCGGTC-CGAT
* * * *
30767038 CTTAGAC-ATGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAAC-AGGCGTACGGTCGCTC
1 CTTAGACTA-GGAATGAACTC-CGTATGCATAAGCCAACCCACGAAACGA-GCGTACGGGCACTC
*** * * * *
30767100 AGTTGGTCGGAGAGGCAGAAAGCGCAAGCTGGGGATCGGTTCGGTCCCCCCTGCGTGCTGCCAAT
63 AGCCAGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGG-CCGGTCCCCCCTGCGTGCTGCCGAT
*
30767165 CCTGCTGTTGCAACCCTCGGTCAGGTCCGAT
127 CCTGCTGCTGCAACCCTCGGTC-GGTCCGAT
*
30767196 CTTAGACTAAGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
30767223 TTAGATTGAG
Statistics
Matches: 268, Mismatches: 63, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
157 1 0.00
158 74 0.28
159 189 0.71
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
CAGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCGGTCCCCCCTGCGTGCTGCCGATCCTG
CTGCTGCAACCCTCGGTCGGTCCGAT
Found at i:30767785 original size:26 final size:26
Alignment explanation
Indices: 30767745--30767797 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30767735 CCGGTCCGAT
*
30767745 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
30767771 CTTAGACATGA-AATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
30767797 C
1 C
30767798 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:30767869 original size:196 final size:195
Alignment explanation
Indices: 30767526--30767878 Score: 532
Period size: 196 Copynumber: 1.8 Consensus size: 195
30767516 GATCCTGCGG
* * *
30767526 TCACAACCCTCGATCCGGTCCGATCTTTGACTGGGAATGAACTCCATATCCAAAGACATGGAATG
1 TCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCATATCCAAAGACATGAAATG
*
30767591 AACTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTAGTCGGAGAGGTAGA
66 AACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTAGTCGGAGAGGTAGA
** *
30767656 ATGTGCAAGTCGGGGATCGGCCCGATCCCTCCTACGTGCTACCAATCCTACTACTGGTCCTACTA
131 ATGCACAAGTCGGGGATCGACCCGATCCCTCCTACGTGCTACCAATCCTACTACTGGTCCTACTA
* * * **
30767721 TCACAACCCTC-AGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACATGAAAT
1 TCACAACCCTCGA-TCCGGTCCGATCTTAGACTGAGAATGAACTCCATATCCAAAGACATGAAAT
*
30767785 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-TCGGTCGGAGAGGT
65 GAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-AGTCGGAGAGGT
30767849 AGAATGCACAAG-CTGGGGATCGACCCGATC
128 AGAATGCACAAGTC-GGGGATCGACCCGATC
30767879 TCCCCTGCAT
Statistics
Matches: 141, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
194 1 0.01
195 61 0.43
196 79 0.56
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (195 bp):
TCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCATATCCAAAGACATGAAATG
AACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTAGTCGGAGAGGTAGA
ATGCACAAGTCGGGGATCGACCCGATCCCTCCTACGTGCTACCAATCCTACTACTGGTCCTACTA
Found at i:30768214 original size:158 final size:156
Alignment explanation
Indices: 30767771--30768231 Score: 452
Period size: 158 Copynumber: 2.9 Consensus size: 156
30767761 ACTTCGTATG
* * * *
30767771 CTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAGC
* * * * * *
30767836 CGGTCGGAGAGGTAGAATGC-ACAAGCTGGGGATCGACCCGATCTCCCCTGCATGCTGTCGATCC
66 CGGTCGAAGAGGCAGAATGCGA-AATCTGGGGATCGGCCCGGTC-CCCCTGCGTGCTGTCGATCC
* *
30767900 TGCTACCGTAACCCTCGGTCCGTTCTGA
129 TGCTGCCGTAACCCTCGGTCCGTTCGGA
* * * * * *
30767928 TCTTAGAC-TAAGAATGAACTCCATATGCCTAAGTCAACCCAGGAAATGAGC-ATGC-GGCACTG
1 -CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGA-GCGGGCGCTC
* * *
30767990 AGCCGGCCAGAA-AGGCATAATGCGAAAGTC-GAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTC
63 AGCCGGTC-GAAGAGGCAGAATGCGAAA-TCTGGGGATCGGCCCGGT-CCCC-CTGCGTGCTGTC
** *
30768053 GATCCTGCTGCCACAACCCTCGGTCCGATTGGGGA
124 GATCCTGCTGCCGTAACCCTCGGTCCG-TT-CGGA
* * *
30768088 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAGC
* * * * * *
30768152 CGGTCGAAGTGGCAGAATGCGTAATCTGGGGATCGGTCCGGTCCGCCCTGTGTGTTGCCGAT-CT
66 CGGTCGAAGAGGCAGAATGCGAAATCTGGGGATCGGCCCGGTCC-CCCTGCGTGCTGTCGATCCT
*
30768216 ACTGCCGTAACCCTCG
130 GCTGCCGTAACCCTCG
30768232 ATCCAGTCCG
Statistics
Matches: 243, Mismatches: 45, Indels: 31
0.76 0.14 0.10
Matches are distributed among these distances:
157 53 0.22
158 146 0.60
159 42 0.17
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGAAATCTGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTG
CTGCCGTAACCCTCGGTCCGTTCGGA
Found at i:30769807 original size:26 final size:26
Alignment explanation
Indices: 30769777--30769829 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30769767 CCGGTTTGAT
30769777 CTTAGACTGGGGATGAACTCCGGATG
1 CTTAGACTGGGGATGAACTCCGGATG
*
30769803 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGGATG
30769829 C
1 C
30769830 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGGATG
Found at i:30769865 original size:343 final size:345
Alignment explanation
Indices: 30769137--30770810 Score: 1490
Period size: 343 Copynumber: 4.8 Consensus size: 345
30769127 GATCCTACTA
* * * ** * **
30769137 CCGTATGCATAAGTCAACCCATGAAATGAGCGTGTGGGCACTGAGCCGGTC-GAAGAGGCATAAT
1 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGACCGGAA-AGGCATAAT
* ** * * * * * *
30769201 GCGCAAGTCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCCACAACCCTCGA
65 GCGCAAGCCAGGGATTAGCCCGATCCCCCGCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGG
*
30769266 TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATCGGCGTGA
130 TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGT-A
* * * * * * * * * *
30769331 -GGGTGCTGAGACGG-TCGGAAAGGCAGAATGCGTAAGTCGGGGAACGGGTCGATCCCCCC-ACG
194 CGGGCGCTCAGTCGGCTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTGCG
* * * * * *
30769393 TGCTGCCGATCCTGTTG-TCATAACCCTCAGTTCGATCCAATCTTAGACTGGGAATGAACTCCGT
259 TGCTGTCGATCCTGCTGCTCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* *
30769457 TTGCTTAGATTGGGGATGAACT
324 ATGCTTAGACTGGGGATGAACT
* * **
30769479 CTGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGTGCTCAGCCGGTCGGAAAGGCATAATG
1 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGACCGGAAAGGCATAATG
* * * *
30769544 CGCAAGCCATGGATTAGCCCGATCCCCCGCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGT
66 CGCAAGCCAGGGATTAGCCCGATCCCCCGCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGGT
*
30769609 CCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACG
131 CCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACG
* ** * *
30769674 GGCACTCAGTCGGCT-GGAGAGGTGGAATGCGCAAGTCGAGGATCAGCTCGGTTCCCCCTGCGTG
196 GGCGCTCAGTCGGCTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTGCGTG
** * *
30769738 CTGTCGATCCTGCTGCT-ACAACCCTCAGTCCGGTTTGATCTTAGACTGGGGATGAACTCCGGAT
261 CTGTCGATCCTGCTGCTCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
30769802 GCTTAGACTGGGGATGAACT
326 GCTTAGACTGGGGATGAACT
* * * *
30769822 CCGTATGCCTAAGTCAGCCCACGAAACGAGCATGTGGGTGCTCAGTCGACCGGAGAGGCATAATG
1 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGACCGGAAAGGCATAATG
* * * **
30769887 TGCAAGTC-GAGGATCT-GCCCGATCCCTCGCTATGTGCTGCCGGTCCCACTACCACAACCCTCG
66 CGCAAGCCAG-GGAT-TAGCCCGATCCCCCGCTGCGTGCTGCCGGTCCCACTACCACAACCCTCG
* * * * * *
30769950 GTCTGGCTGGGGCTTAGACATGGAATGAACACCTTATGCCTAAGGCAACCCACAAAATGGGCGTG
129 GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTA
* * * * *
30770015 CGGGCGCTTAGTC-GATCGGAGAGGCAGAATACGCAAG-CCAGGGATCGGC-CTGATCCCCCCTG
194 CGGGCGCTCAGTCGGCTCGGAGAGGCAGAATGCGCAAGTCGA-GGATCGGCTC-GGTCCCCCCTG
* * * * *
30770077 CGTGCTATCGATCTTGCT-ATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
257 CGTGCTGTCGATCCTGCTGCTCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* *
30770141 ATATGCTTAGACTGCGGATGAACT
322 GTATGCTTAGACTGGGGATGAACT
* * * *
30770165 CCGTATGCCTAAGTCAACCCACAAAACGAGCTTGTGGGTGCTCAGCTGACCGGAGAGGCATAATG
1 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGACCGGAAAGGCATAATG
** * * * * **
30770230 CATAAGCCGGGGATTAGCTC-AGTCCCCCGTTGTGTGCTGCCGGTCCTGCTACCACAACCCTCGG
66 CGCAAGCCAGGGATTAGCCCGA-TCCCCCGCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGG
* * * * * * *
30770294 TCCGGCTGGGGCATAGACTTGGAATGAACTCCCTTTGCCTAAGCCAACCCATGAAACGAGCGTTC
130 TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTAC
* * * * * * * *
30770359 GGGTGCTCAGCCGGC-CAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCTT
195 GGGCGCTCAGTCGGCTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTGCGT
* * ** * * * *
30770423 ACTGTAGATCCTGCTGCCTGTCCTGCTACCGCAACCCTTGGACCAGACCGATCATAGACTGGGAA
260 GCTGTCGAT-C--CTG-CTG--CT-C-A---CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAA
* *
30770488 TGAACTACGTATGCTTAGACAT-GGAATGAACT
314 TGAACTCCGTATGCTTAGAC-TGGGGATGAACT
* ** * * * * * *
30770520 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGTCG-CTCGGAGAGCCAGAAT
1 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGAC-CGGAAAGGCATAAT
* * ** * * * * * * **
30770584 GGGCAAGCC-GAGGA-TCGACTTGGTCCCCC-C-GACATGTTGTCGATCCTACTACCGTAACCCT
65 GCGCAAGCCAG-GGATTAG-CCCGATCCCCCGCTG-CGTGCTGCCGGTCCCACTACCACAACCCT
**** * * * ** * *
30770645 CGGTCCGG-TCCAATCTTAGAC-TGGGAATGAACTCCGTGTGCATAAGTTAACCCATGAAATGAG
127 CGGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGG
* * * * * * * *
30770708 CGTGCGGGCGCTGAGCCGG-TCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCT
190 CGTACGGGCGCTCAGTCGGCTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCC-
** *
30770772 CTGCGTGCTGTCGATCCCACTGC-CACAACCCTCGGTCCG
254 CTGCGTGCTGTCGATCCTGCTGCTCACAACCCTCAGTCCG
30770811 ACTGGGGCTT
Statistics
Matches: 1093, Mismatches: 200, Indels: 77
0.80 0.15 0.06
Matches are distributed among these distances:
341 1 0.00
342 218 0.20
343 588 0.54
344 7 0.01
346 3 0.00
347 3 0.00
349 1 0.00
350 1 0.00
351 4 0.00
352 1 0.00
353 3 0.00
354 127 0.12
355 135 0.12
356 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (345 bp):
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGACCGGAAAGGCATAATG
CGCAAGCCAGGGATTAGCCCGATCCCCCGCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGGT
CCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACG
GGCGCTCAGTCGGCTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTGCGTG
CTGTCGATCCTGCTGCTCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGGATGAACT
Found at i:30770161 original size:26 final size:26
Alignment explanation
Indices: 30770120--30770172 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30770110 CCGGTCCGAT
30770120 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30770146 CTTAGACTGCGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
30770172 C
1 C
30770173 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30770322 original size:686 final size:685
Alignment explanation
Indices: 30769190--30770439 Score: 1662
Period size: 686 Copynumber: 1.8 Consensus size: 685
30769180 AGCCGGTCGA
* * * * *
30769190 AGAGGCATAATGCGCAAGTCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCC
1 AGAGGCATAATGCGCAAGTCAGGGATCGGCCCGATCCCCCGCTACGTGCTGCCGATCCCACTACC
* *
30769255 ACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
66 ACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACAA
* * * * * * *
30769320 AATCGGCGTGAGGGTGCTGAGACGGTCGGAAAGGCAGAATGCGTAAGTCGGGGAACGGGTCGATC
131 AATCGGCGTGAGGGCGCTGAGACGATCGGAAAGGCAGAATACGCAAGCCAGGGAACGGCTCGATC
* * * * *
30769385 CCCCCACGTGCTGCCGATCCTGTTGTCATAACCCTCAGTTCGATCCAATCTTAGACTGGGAATGA
196 CCCCCACGTGCTACCGATCCTGCTATCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGA
* * * * * *
30769450 ACTCCGTTTGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGTG
261 ACTCCATATGCTTAGACTGCGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGTG
** * * *
30769515 GGTGCTCAGCCGGTCGGAAAGGCATAATGCGCAAGCCATGGATTAGCCCGATCCCCCGCTGCGTG
326 GGTGCTCAGCCGACCGGAAAGGCATAATGCACAAGCCAGGGATTAGCCAGATCCCCCGCTGCGTG
* *
30769580 CTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
391 CTACCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATG
* * * ** ** * *
30769645 CCTAAGCCAACCCACGAAATGGGCGTACGGGCACTCAGTCGGCTGGAGAGGTGGAATGCGCAAGT
456 CCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGAGGCAGAATGCACAAGC
* * * *
30769710 CGAGGATCAGCTCGGTTCCCCCTGCGTGCTGTCGATCCTGCTGCTACAACCCTCAGTCCGGTTTG
521 CGAGGATCAGCCCGGTCCCCCCTGCGTACTGTAGATCCTGCTGCTACAACCCTCAGTCCGGTTTG
30769775 ATCTTAGACTGGGGATGAACTCCGGATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAGC
586 ATCTTAGACTGGGGATGAACTCCGGATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAGC
30769840 CCACGAAACGAGCATGTGGGTGCTCAGTCGACCGG
651 CCACGAAACGAGCATGTGGGTGCTCAGTCGACCGG
* * * * *
30769875 AGAGGCATAATGTGCAAGTC-GAGGATCTGCCCGATCCCTCGCTATGTGCTGCCGGTCCCACTAC
1 AGAGGCATAATGCGCAAGTCAG-GGATCGGCCCGATCCCCCGCTACGTGCTGCCGATCCCACTAC
* * * *
30769939 CACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACACCTTATGCCTAAGGCAACCCACA
65 CACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACA
* * * * * *
30770004 AAATGGGCGTGCGGGCGCTTAGTCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCGGC-CTGA
130 AAATCGGCGTGAGGGCGCTGAGACGATCGGAAAGGCAGAATACGCAAGCCAGGGAACGGCTC-GA
* * * * * * *
30770068 TCCCCCCTGCGTGCTATCGATCTTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
194 TCCCCCC-ACGTGCTACCGATCCTGCTATCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAA
30770133 TGAACTCCATATGCTTAGACTGCGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCT-
258 TGAACTCCATATGCTTAGACTGCGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAG-TG
* * * * *
30770197 TGTGGGTGCTCAGCTGACCGGAGAGGCATAATGCATAAGCCGGGGATTAGCTCAG-TCCCCCGTT
322 TGTGGGTGCTCAGCCGACCGGAAAGGCATAATGCACAAGCCAGGGATTAGC-CAGATCCCCCGCT
* * * * *
30770261 GTGTGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCATAGACTTGGAATGAACTCC
386 GCGTGCTACCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCC
* * * **
30770326 CTTTGCCTAAGCCAACCCATGAAACGAGCGTTCGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCA
451 CTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGAGGCAGAATGCA
* * *
30770391 CAAGCCGGGGATCGGCCCGGTCCCCCCTGCTTACTGTAGATCCTGCTGC
516 CAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTACTGTAGATCCTGCTGC
30770440 CTGTCCTGCT
Statistics
Matches: 475, Mismatches: 85, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
684 2 0.00
685 167 0.35
686 303 0.64
687 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (685 bp):
AGAGGCATAATGCGCAAGTCAGGGATCGGCCCGATCCCCCGCTACGTGCTGCCGATCCCACTACC
ACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACAA
AATCGGCGTGAGGGCGCTGAGACGATCGGAAAGGCAGAATACGCAAGCCAGGGAACGGCTCGATC
CCCCCACGTGCTACCGATCCTGCTATCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGA
ACTCCATATGCTTAGACTGCGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGTG
GGTGCTCAGCCGACCGGAAAGGCATAATGCACAAGCCAGGGATTAGCCAGATCCCCCGCTGCGTG
CTACCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGAGGCAGAATGCACAAGC
CGAGGATCAGCCCGGTCCCCCCTGCGTACTGTAGATCCTGCTGCTACAACCCTCAGTCCGGTTTG
ATCTTAGACTGGGGATGAACTCCGGATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAGC
CCACGAAACGAGCATGTGGGTGCTCAGTCGACCGG
Found at i:30770856 original size:159 final size:156
Alignment explanation
Indices: 30770500--30771005 Score: 482
Period size: 158 Copynumber: 3.2 Consensus size: 156
30770490 AACTACGTAT
*
30770500 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGT-CGGGCGCTCAG
* * * * * * *
30770565 TCGCTCGGAGAGCCAGAATGGGCAAGCCGAGGATCGACTTGGTCCCCCC-GACATGTTGTCGATC
64 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGGTCCCCCCTG-CGTGCTGTCGATC
* ** *
30770629 CTACTACCGTAACCCTCGGTCCGGTCCAA
128 CCACTACCACAACCCTCGGTCCGCTCCAA
* * * ** * *
30770658 TCTTAGAC-TGGGAATGAACTCCGTGTGCATAAGTTAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGT-CGGGCGCTCA
* * *
30770722 GCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCTCTGCGTGCTGTCGAT
63 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGGTCCCCC-CTGCGTGCTGTCGAT
* ***
30770787 CCCACTGCCACAACCCTCGGTCCGACT-GGG
127 CCCACTACCACAACCCTCGGTCCG-CTCCAA
* * *
30770817 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATCTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGA-GCGTC-GGGCGCTCAG
* * * * * * *
30770882 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCTAGTCCCCCCTACGTGCTGCCAATCT
64 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCC
** * ***
30770947 TGCTACCACAACCTTCGGTCCAG-TATGA
129 CACTACCACAACCCTCGGTCC-GCTCCAA
*
30770975 TCTTAGAC-TGGGAATGAACTCCGTATGCCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTA
30771006 GACTGGGGAT
Statistics
Matches: 282, Mismatches: 56, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 153 0.54
159 123 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAGCGTCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCCA
CTACCACAACCCTCGGTCCGCTCCAA
Found at i:30771008 original size:26 final size:26
Alignment explanation
Indices: 30770978--30771031 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
30770968 AGTATGATCT
30770978 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
30771004 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
30771030 TA
1 TA
30771032 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:30771170 original size:343 final size:343
Alignment explanation
Indices: 30770661--30771408 Score: 1007
Period size: 343 Copynumber: 2.2 Consensus size: 343
30770651 GGTCCAATCT
* * * * * * *
30770661 TAGACTGGGAATGAACTCCGTGTGCATAAGTTAACCCATGAAATGAGCGTGCGGGCGCTGAGCCG
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCG
* * * * * * *
30770726 GTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCTCTGCGTGCTGTCGATCCCA
66 CTCGAAGAGGCATAATGCGCAAGCCGGAGATCAGCTCGATCCCCCGCTGCGTGCTATCGATCCCA
*
30770791 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
131 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
*
30770856 CACGAAACAGGCAT-CTGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGAC
196 CACGAAACAGGCATAC-GGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGAC
* * * *
30770920 CTAGTCCCCCCTACGTGCTGCCAATCTTGCTACCACAACCTTCGGTCCAGTATGATCTTAGACTG
260 CCAGTCCCCCCTACGTGCTGCCAATCCTACTACCACAACCCTCGGTCCAGTATGATCTTAGACTG
30770985 GGAATGAACTCCGTATGCC
325 GGAATGAACTCCGTATGCC
*
30771004 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAATGAGCATGTGGGCGCTCAGCC
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG-AAATGAGCATGCGGGCGCTCAGCC
* *
30771069 GACT-GGAGAGGCATAATGCGTAAGCCGGAGATCAGCTCGAT-CCCCGCTGCGTGCTATCGATCC
65 G-CTCGAAGAGGCATAATGCGCAAGCCGGAGATCAGCTCGATCCCCCGCTGCGTGCTATCGATCC
** * * *
30771132 CGTTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTA
129 CACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
30771197 CCCATGAAACGGGCATACGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCATAGGCCAGGGATCGA
194 CCCACGAAACAGGCATACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGA
* * * * ** * * * * *
30771262 CCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAGCCCTCGGTCTAGTCTGATCTTGGACT
259 CCCAGTCCCCCCTACGTGCTGCCAATCCTACTACCACAACCCTCGGTCCAGTATGATCTTAGACT
* *
30771327 GGGAATGAACTTCGTATGCT
324 GGGAATGAACTCCGTATGCC
* * *
30771347 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCTGGTGCTCAG
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAG
30771409 TCAGTAGGAG
Statistics
Matches: 352, Mismatches: 50, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
342 18 0.05
343 279 0.79
344 54 0.15
345 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCG
CTCGAAGAGGCATAATGCGCAAGCCGGAGATCAGCTCGATCCCCCGCTGCGTGCTATCGATCCCA
CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACAGGCATACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACC
CAGTCCCCCCTACGTGCTGCCAATCCTACTACCACAACCCTCGGTCCAGTATGATCTTAGACTGG
GAATGAACTCCGTATGCC
Found at i:30771260 original size:856 final size:844
Alignment explanation
Indices: 30769803--30771394 Score: 2069
Period size: 856 Copynumber: 1.9 Consensus size: 844
30769793 ACTCCGGATG
* * * * * *
30769803 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAGCCCACGAAACGAGCATGTGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * *
30769868 CGACCGGAGAGGCATAATGTGCAAGTCGAGGATCTGCCCGATCCCTCGCTATGTGCTGCCGGTCC
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCGCTACGTGCTGCCGATCC
* * * *
30769933 CACTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACACCTTATGCCTAAGGCAA
131 CACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAA
** * * * * *
30769998 CCCACAAAATGGGCGTGCGGGCGCTTAGTCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCGG
196 CCCACAAAACAGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATACACAAGCCAGGGATCGA
* * * * * * *
30770063 CCTGATCCCCCCTGCGTGCTATCGATCTTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACT
261 CCTGATCCCCCCTACGTGCTACCAATCTTGCTACCACAACCCTCGGTCCAGTACGATCTTAGACT
*
30770128 GGGAATGAACTCCATATGCTTAGACTGCGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
326 GGGAATGAACTCCATATGCCTAGACTGCGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
* * * * *
30770193 AGCTTGTGGGTGCTCAGCTGACCGGAGAGGCATAATGCATAAGCCGGGGATTAGCTCAGTCCCCC
391 AGCATGTGGGCGCTCAGCCGACCGGAGAGGCATAATGCATAAGCCGGAGATCAGCTCAGTCCCCC
* * * * * * *
30770258 GTTGTGTGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCATAGACTTGGAATGAAC
456 GCTGCGTGCTACCGATCCCGCTACCACAACCCTCGATCCGGCTGGGGCATAGACATGGAATGAAC
* * *
30770323 TCCCTTTGCCTAAGCCAACCCATGAAACGAGCGTTCGGGTGCTCAGCCGGCCAGAGAGGCAGAAT
521 TCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAGCCGGCCAGAGAGGCAGAAT
* * * *
30770388 GCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCTTACTGTAGATCCTGCTGCCTGTCCTGCTACC
586 GCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTACTGTAGAT-C--CT-ACTGT-C-GC-A--
*
30770453 GCAACCCTTGGACCAGACCGATCATAGACTGGGAATGAACTACGTATGCTTAGACAT-GGAATGA
642 G---CCCTCGGACCAGACCGATCATAGACTGGGAATGAACTACGTATGCTTAGAC-TGGGAATGA
30770517 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGTCGCTCGGAGAGCCAGA
703 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGTCGCTCGGAGAGCCAGA
30770582 ATGGGCAAGCCGAGGATCGACTTGGTCCCCCCGACATGTTGTCGATCCTACTACCGTAACCCTCG
768 ATGGGCAAGCCGAGGATCGACTTGGTCCCCCCGACATGTTGTCGATCCTACTACCGTAACCCTCG
30770647 GTCCGGTCCAAT
833 GTCCGGTCCAAT
* * * * * *
30770659 CTTAGACTGGGAATGAACTCCGTGTGCATAAGTTAACCCATGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
** * ** * * * *
30770724 CGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCGCTACGTGCTGCCGATCC
* *
30770789 CACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAA
* * * *
30770854 CCCACGAAACAGGCAT-CTGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCG
196 CCCACAAAACAGGCATGC-GGGCGCTCAGCCGATCGGAGAGGCAGAATACACAAGCCAGGGATCG
* * *
30770918 ACCT-AGTCCCCCCTACGTGCTGCCAATCTTGCTACCACAACCTTCGGTCCAGTATGATCTTAGA
260 ACCTGA-TCCCCCCTACGTGCTACCAATCTTGCTACCACAACCCTCGGTCCAGTACGATCTTAGA
* *
30770982 CTGGGAATGAACTCCGTATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
324 CTGGGAATGAACTCCATATGCCTAGACTGCGGATGAACTCCGTATGCCTAAGTCAACCCAC-AAA
* * *
30771047 ATGAGCATGTGGGCGCTCAGCCGACTGGAGAGGCATAATGCGTAAGCCGGAGATCAGCTC-GAT-
388 ACGAGCATGTGGGCGCTCAGCCGACCGGAGAGGCATAATGCATAAGCCGGAGATCAGCTCAG-TC
* * * * *
30771110 CCCCGCTGCGTGCTATCGATCCCGTTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAAT
452 CCCCGCTGCGTGCTACCGATCCCGCTACCACAACCCTCGATCCGGCTGGGGCATAGACATGGAAT
* * * *
30771175 GAACTCCCTATGCCTAAGCCTACCCATGAAACGGGCATACGGGTGCTCAGCCGGTCGGAGAGGCA
517 GAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAGCCGGCCAGAGAGGCA
* * * *
30771240 GAATGCATAGGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAGCCCT
582 GAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTACTGTAGATCCTACTGTCGCAGCCCT
* * * * * * * *
30771305 CGGTCTAGTCTGATCTTGGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTAT
647 CGGACCAGACCGATCATAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTAT
*
30771370 GCCTAAGTCAACCCACGAAACGAGC
712 GCCTAAGCCAACCCACGAAACGAGC
30771395 ATGCTGGTGC
Statistics
Matches: 628, Mismatches: 103, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
843 1 0.00
844 82 0.13
847 1 0.00
849 1 0.00
850 2 0.00
851 1 0.00
852 4 0.01
853 2 0.00
855 3 0.00
856 475 0.76
857 56 0.09
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (844 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCGCTACGTGCTGCCGATCC
CACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAA
CCCACAAAACAGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATACACAAGCCAGGGATCGA
CCTGATCCCCCCTACGTGCTACCAATCTTGCTACCACAACCCTCGGTCCAGTACGATCTTAGACT
GGGAATGAACTCCATATGCCTAGACTGCGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
AGCATGTGGGCGCTCAGCCGACCGGAGAGGCATAATGCATAAGCCGGAGATCAGCTCAGTCCCCC
GCTGCGTGCTACCGATCCCGCTACCACAACCCTCGATCCGGCTGGGGCATAGACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTCAGCCGGCCAGAGAGGCAGAAT
GCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTACTGTAGATCCTACTGTCGCAGCCCTCGGA
CCAGACCGATCATAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGTCGCTCGGAGAGCCAGAATGGGCAAGCCGA
GGATCGACTTGGTCCCCCCGACATGTTGTCGATCCTACTACCGTAACCCTCGGTCCGGTCCAAT
Found at i:30771725 original size:26 final size:26
Alignment explanation
Indices: 30771687--30771739 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30771677 CCGATCTGAT
*
30771687 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATAAACCCCGTATG
*
30771713 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACCCCGTATG
30771739 C
1 C
30771740 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACCCCGTATG
Found at i:30771736 original size:184 final size:184
Alignment explanation
Indices: 30771528--30771897 Score: 479
Period size: 184 Copynumber: 2.0 Consensus size: 184
30771518 TCAGACTGGG
* * * * * * * *
30771528 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCTACCCACGAAATGAGCGTGCAGGTGCTTAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCAGGCGCTCAG
* * *
30771593 CCGACCGCAGAGGCAGAATGCGCAAATCAAGGAATGGCCCGATCCCCCCTGTGTGCTATCGATCC
66 CCAACCGCAGAGGCAGAATGCACAAATCAAGGAATGGCCCGATCCCCCCTGCGTGCTATCGATCC
30771658 TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACCCCGTAT
131 TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACCCCGTAT
* **
30771712 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCTCAAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCAGGCGCTCAG
* * * * *** * * * *
30771777 CCAACTGGAGAGGCAGAATGCATAAGTTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCT
66 CCAACCGCAGAGGCAGAATGCACAAATCAAGGAATGGCCCGATCCCCCCTGCGTGCTATCGATCC
* * * *
30771842 TGCTACCGCAACCCTCGGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACCCCGTAT
30771896 GC
1 GC
30771898 CTAAGTCAAC
Statistics
Matches: 157, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
184 157 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCAGGCGCTCAG
CCAACCGCAGAGGCAGAATGCACAAATCAAGGAATGGCCCGATCCCCCCTGCGTGCTATCGATCC
TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACCCCGTAT
Found at i:30771967 original size:158 final size:158
Alignment explanation
Indices: 30771713--30772214 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 158
30771703 ACCCCGTATG
* *
30771713 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGACAACCCT-CAAAACGAGCGTGTGGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGACAA-CCTACAAAACGAGCGTGCGGGCGCTCA
** ** ** *
30771776 GCCAACTGGAGAGGCAGAATGCATAAGTTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
64 GCGGAC-GGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* *
30771841 TTGCTACCGCAACCCTCGGTCTGATCT-GAT
128 CTGCTGCCGCAACCCTCGGTCTGATCTCGAT
* * *
30771871 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGACAACCTACAAAACGAGCGTGCGGGCGCTCAG-
* * * * * *
30771936 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGGTCC
65 CGGACGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
** * * * **
30772001 CACTGCCACAACCCTTGGTCTGA-CTGGGG
129 TGCTGCCGCAACCCTCGGTCTGATCTCGAT
* * * * * * *
30772030 GTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGACAACCTACAAAACGAGCGTGCGGGCGCTCAG
* * * * **
30772094 CCGGCCAGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCC
65 -CGGACGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
30772159 TGCTGTCGCAACCCTCGGTCTGGT-TCGAT
129 TGCTGCCGCAACCCTCGGTCTGATCTCGAT
* * *
30772188 CTTAGACTGGGAATTAACTCGGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
30772215 TTAGACTAGG
Statistics
Matches: 276, Mismatches: 60, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 141 0.51
159 129 0.47
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGACAACCTACAAAACGAGCGTGCGGGCGCTCAGC
GGACGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCTGATCTCGAT
Found at i:30772067 original size:159 final size:157
Alignment explanation
Indices: 30771712--30772150 Score: 461
Period size: 159 Copynumber: 2.8 Consensus size: 157
30771702 AACCCCGTAT
* *
30771712 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCT-CAAAACGAGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAA-CCTACAAAACGAGCGTGCGGGCGCTCA
** ** ** *
30771776 GCCAACTGGAGAGGCAGAATGCATAAGTTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
65 GCGGAC-GGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
*** *
30771841 TTGCTACCGCAACCCTCGGTCTGATCTGA
129 CCACTACCACAACCCTCGGTCTGATCTGA
* * * *
30771870 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCTACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
30771934 GTCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGGT
65 G-CGGACGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * *
30771999 CCCACTGCCACAACCCTTGGTCTGA-CTGGG
128 CCCACTACCACAACCCTCGGTCTGATCT-GA
* * * * * * *
30772029 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCTACAAAACGAGCGTGCGGGCGCTCAG
* * * *
30772094 CCGGCCAGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCCTACGTGCT
66 -CGGACGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCGTGCT
30772151 ACCGATCCTG
Statistics
Matches: 231, Mismatches: 44, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
157 4 0.02
158 97 0.42
159 129 0.56
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCTACAAAACGAGCGTGCGGGCGCTCAG
CGGACGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
ACTACCACAACCCTCGGTCTGATCTGA
Found at i:30772232 original size:26 final size:26
Alignment explanation
Indices: 30772188--30772240 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30772178 CTGGTTCGAT
*
30772188 CTTAGACTGGGAATTAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
*
30772214 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCGGTATG
30772240 C
1 C
30772241 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:30772885 original size:159 final size:159
Alignment explanation
Indices: 30772541--30772903 Score: 389
Period size: 158 Copynumber: 2.3 Consensus size: 159
30772531 AACTCTGCAT
*
30772541 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAATGATCGTGCGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAATGATCGTGCGAGCACTCA
* * * *
30772605 GTCAGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCTCCCCTGCGTGCTGTTGATC
66 GTCAGTCGGAGAGGCAGAATACGAAAGCCAAGGATCAACCCGATCCCCCCTGCGTGCTGTTGATC
** * * **
30772670 CTGCTGTCGCAACCCTCGATCCGTTTCGA
131 CCACTGCCACAACCCTCGATCCGGCTCGA
* * *
30772699 TCTTAGAC-TGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAA-GAGT-GTGCG-GCCAC
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAATGA-TCGTGCGAG-CAC
* * * * ** *
30772760 TGAG-CTGATCGGAGAGGCATAATACGAAAGTCGGGGATCAACCTGATCCCCCTCTGCGTGCTGT
63 TCAGTCAG-TCGGAGAGGCAGAATACGAAAGCCAAGGATCAACCCGATCCCCC-CTGCGTGCTGT
* * * *
30772824 T-AGTCCCACTGCCACAACCCTTGGTCCGGCTGGG
126 TGA-TCCCACTGCCACAACCCTCGATCCGGCTCGA
*
30772858 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
30772904 CGGGCGTGCG
Statistics
Matches: 168, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 5 0.03
158 84 0.50
159 77 0.46
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAATGATCGTGCGAGCACTCA
GTCAGTCGGAGAGGCAGAATACGAAAGCCAAGGATCAACCCGATCCCCCCTGCGTGCTGTTGATC
CCACTGCCACAACCCTCGATCCGGCTCGA
Found at i:30772971 original size:159 final size:159
Alignment explanation
Indices: 30772541--30772959 Score: 418
Period size: 159 Copynumber: 2.6 Consensus size: 159
30772531 AACTCTGCAT
* *
30772541 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAATGATCGTGCGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAA-GAGCGTGCGGGCGCTCA
* * * ** * *
30772605 GTCAGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCTCCC-CTGCGTGCTGTTGAT
65 GCCGGTCGGAGAGGCAGAATGCACAAATCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTTGAT
** * * **
30772669 CCTGCTGTCGCAACCCTCGATCCGTTTCGA
130 CCCACTGCCACAACCCTCGATCCGGCTCGA
* * * * * * *
30772699 TCTTAGAC-TGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGTGTGCGGCCACTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCA
* * * * * *
30772763 GCTGATCGGAGAGGCATAAT--ACGAAAGTCGGGGATCAACCTGATCCCCCTCTGCGTGCTGTT-
65 GCCGGTCGGAGAGGCAGAATGCAC-AAA-TCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTTG
* * * *
30772825 AGTCCCACTGCCACAACCCTTGGTCCGGCTGGG
128 A-TCCCACTGCCACAACCCTCGATCCGGCTCGA
* * *
30772858 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* *
30772923 CCGGCCGGAGTGGCAGAATGCACAAATCGAGGATCGA
66 CCGGTCGGAGAGGCAGAATGCACAAATCGAGGATCGA
30772960 TCGGGTCCCC
Statistics
Matches: 203, Mismatches: 49, Indels: 17
0.75 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 4 0.02
158 79 0.39
159 112 0.55
160 5 0.02
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAATCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTTGATC
CCACTGCCACAACCCTCGATCCGGCTCGA
Found at i:30773306 original size:26 final size:26
Alignment explanation
Indices: 30773268--30773325 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
30773258 AGATGACCCG
* *
30773268 TTTTCTATTTTTCAAAATTTTTGAAAC
1 TTTT-TATGTTTCAAAATTTTTGAAAA
* *
30773295 TTTTTATGTTTCAAGATTTTTTAAAA
1 TTTTTATGTTTCAAAATTTTTGAAAA
30773321 TTTTT
1 TTTTT
30773326 TTAGAAATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (26 bp):
TTTTTATGTTTCAAAATTTTTGAAAA
Found at i:30774052 original size:159 final size:160
Alignment explanation
Indices: 30773748--30774562 Score: 657
Period size: 159 Copynumber: 5.1 Consensus size: 160
30773738 GTGCGTCAAA
* * *
30773748 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
1 ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
30773813 GTCGGTCGGAGAGGCAGAATGCTCAAGTCGGGGACCAGCCTGGTCCCACC-CTACATGCTGTCGA
66 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCC-CCTCTGCGTGCTGCCGA
*
30773877 TCCTGCTGCCATAACCCTCGGTCCAGTCT-G
130 TCCTGCTGCCACAACCCTCGGTCCAGTCTGG
* * * * * * *
30773907 ATCTTAGATTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGA
1 ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
30773972 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCC-AG
66 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGA-
** * * * *
30774036 TCCCACTACAACAACCCTCGGT-CTGGCTGG
130 TCCTGCTGCCACAACCCTCGGTCCAGTCTGG
** * * * * ** * *
30774066 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCAGATGTTG
1 ATCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * * * * ** *
30774130 AACCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCTGAT-CCTCTCTATGTGCTACCGA
65 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGA
* ** ** ** *
30774194 TCCTGTTGCCGTAACCCTCAATTGAATCT-G
130 TCCTGCTGCCACAACCCTCGGTCCAGTCTGG
* * * * * * * * *
30774224 ATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAATGAGTGTGTGGACGCTCA
1 ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
30774289 GCCGGTCGGAGAGGCATAATGTGCAAGCCAGGGATTAGCCCGATCCCCCGT-TGCATGCTGCAGG
66 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCC-TCTGCGTGCTGCCGA
* * *
30774353 TCCCGCTGCCACAATCCTCGGTCC-GACTGG
130 TCCTGCTGCCACAACCCTCGGTCCAGTCTGG
** * * *
30774383 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTC
1 ATCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * *
30774447 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATC-GGCTCGGTCCCCC-CTGCGTGCTGCCG
65 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCT-GGTCCCCCTCTGCGTGCTGCCG
* ** ** * *
30774510 ATCCTACTGCTGCAACCCTCATTCCGGT-TCG
129 ATCCTGCTGCCACAACCCTCGGTCCAGTCTGG
*
30774541 ATCTTAGACTGGGAATGAACTC
1 ATCTTAGAATGGGAATGAACTC
30774563 TAGATGCTTA
Statistics
Matches: 500, Mismatches: 141, Indels: 31
0.74 0.21 0.05
Matches are distributed among these distances:
157 2 0.00
158 167 0.33
159 328 0.66
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (160 bp):
ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGAT
CCTGCTGCCACAACCCTCGGTCCAGTCTGG
Found at i:30774513 original size:317 final size:317
Alignment explanation
Indices: 30773759--30774563 Score: 933
Period size: 317 Copynumber: 2.5 Consensus size: 317
30773749 TCTTAGATTG
* * * * *
30773759 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGTCGGTCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTAAGCCGGTCGGAG
* * * * *
30773824 AGGCAGAATGCTCAAGTCGGGGACCAGCCTGGTCCCACCCTACATGCTGTCGATCCTGCTGCCAT
66 AGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCC-CCCTACGTGCTGCCGATCCTGCTGCCGT
* ** * * *
30773889 AACCCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACT-TCGTATGCATAAGTCAACCCATGAA
130 AACCCTC-ATTGAATCTGATCTTAGACTGGGAATGAACTCTCGTATGCATAAGTCAACCCAAGAA
** * * *
30773953 ATGAGCGTGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCTGGTCC
194 ATGAGCGTGCGGACGCTCAGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCC
* * *
30774018 CCCTCTGCGTGCTGCCAGTCCCACTACAACAACCCTCGGTCTGGCTGGGGCTTAGACAT
259 CCCTCTGCATGCTGCCAGTCCCACTACAACAACCCTCGGTCCGACTGGGGCTTAGACAT
* * * *
30774077 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGC-AGATGTTGAA-CCGATCGG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAG-CGCT-AAGCCGGTCGG
* * * * * * *
30774140 AGAGGCAGAATGCGTAAGTCGGGGATCAGCCTGATCCTCTCTATGTGCTACCGATCCTGTTGCCG
64 AGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCG
* *
30774205 TAACCCTCAATTGAATCTGATCTTAGACTAGGAATGAACTCT-GTATGCCTAAGTCAACCCAAGA
129 TAACCCTC-ATTGAATCTGATCTTAGACTGGGAATGAACTCTCGTATGCATAAGTCAACCCAAGA
* * * * * *
30774269 AATGAGTGTGTGGACGCTCAGCCGGTCGGAGAGGCATAATGTGCAAGCCAGGGATTAGCCCGATC
193 AATGAGCGTGCGGACGCTCAGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATC
* * * *
30774334 CCCCGT-TGCATGCTG-CAGGTCCCGCTGCCACAATCCTCGGTCCGACTGGGGCTTAGACAT
258 CCCC-TCTGCATGCTGCCA-GTCCCACTACAACAACCCTCGGTCCGACTGGGGCTTAGACAT
* *
30774394 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGCCGGCCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTAAGCCGGTCGGAG
* ** * * * * *
30774459 AGGCAGAATGCGCAAGCCAAGGATC-GGCTCGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGC
66 AGGCAGAATGCGCAAGTCGGGGATCAGCCT-GGTCCCCCCTACGTGCTGCCGATCCTGCTGCCGT
**
30774523 AACCCTCATTCCGGTTC-GATCTTAGACTGGGAATGAACTCT
130 AACCCTCATT--GAATCTGATCTTAGACTGGGAATGAACTCT
30774564 AGATGCTTAG
Statistics
Matches: 405, Mismatches: 72, Indels: 21
0.81 0.14 0.04
Matches are distributed among these distances:
316 9 0.02
317 305 0.75
318 89 0.22
319 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (317 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTAAGCCGGTCGGAG
AGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCGTA
ACCCTCATTGAATCTGATCTTAGACTGGGAATGAACTCTCGTATGCATAAGTCAACCCAAGAAAT
GAGCGTGCGGACGCTCAGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCC
CTCTGCATGCTGCCAGTCCCACTACAACAACCCTCGGTCCGACTGGGGCTTAGACAT
Found at i:30774872 original size:343 final size:343
Alignment explanation
Indices: 30774226--30775052 Score: 1018
Period size: 343 Copynumber: 2.4 Consensus size: 343
30774216 TGAATCTGAT
* * * * * *
30774226 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAATGAGTGTGTGGACGCTCAGC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* ** * * * * *
30774291 CGGTCGGAGAGGCATAATGTGCAAGCC-AGGGATTAGCCCGATCCCCCGTTGCATGCTGCAGGTC
66 CGATCGGAGAGGCATAATGCACAAGCCGA-GGATCAGCTCGATCCCCCGCTGCGTGCTGCAGATC
* ** *
30774355 CCGCTGCCACAATCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTGCCACAACCCTCAATCCGACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCA
** * *
30774420 ACCCATGAAACGGGCGTGCGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCG
195 ACCCACAAAACGGGCGTGCGAGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCG
* * * *
30774485 GCTCGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTCATTCCGGTTCGATCTTAGAC
260 GCCCGGTCCCCCCTGCATGCTGCCGATCCTACTGCTGCAACCCTCAGTCCGGTCCGATCTTAGAC
*
30774550 TGGGAATGAACTCTAG-ATG
325 TGGGAATGAACTC-AGTACG
*
30774569 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * *
30774634 CGATCGAAGACGCATAATGCACAAGCCGAGGATCAGCTCGATCCCCCGCTACGTGCTGTC-GATC
66 CGATCGGAGAGGCATAATGCACAAGCCGAGGATCAGCTCGATCCCCCGCTGCGTGCTG-CAGATC
* * *
30774698 CCGCTGCCATAACCCTCAATCC-AGCTGTGGCTGAGACGTGGAATGAACTCCCTATGCCTAAGCC
130 CCGCTGCCACAACCCTCAATCCGA-CTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
30774762 AACCCACAAAACGGGCGTGCGGGCGCAT-AGTCAGTCGAAGAGGCAGAATGCGCAAGCTAGGGAT
194 AACCCACAAAACGGGCGTGCGAGCGC-TCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGAT
* ** * * * *
30774826 CGGCCCGGTCCCTCCTGCATGCTGCCTTTCCTGCT-ATCGGAACCCTCGGTCCGGTCCGATCTTA
258 CGGCCCGGTCCCCCCTGCATGCTGCCGATCCTACTGCT-GCAACCCTCAGTCCGGTCCGATCTTA
*
30774890 GACTGGGAATGAACTCCGTACG
322 GACTGGGAATGAACTCAGTACG
* * * * *
30774912 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAACGTGTGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
** * * * * * *
30774977 CGATCGGAGAGGCATAATGCTTAAGCCGGGGATCAGCTCGGTCCCCCACTGTGTGCTACTGATCC
66 CGATCGGAGAGGCATAATGCACAAGCCGAGGATCAGCTCGATCCCCCGCTGCGTGCTGCAGATCC
30775042 CGCTGCCACAA
131 CGCTGCCACAA
30775053 ACCACAAAAC
Statistics
Matches: 413, Mismatches: 64, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
342 4 0.01
343 406 0.98
344 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGATCGGAGAGGCATAATGCACAAGCCGAGGATCAGCTCGATCCCCCGCTGCGTGCTGCAGATCC
CGCTGCCACAACCCTCAATCCGACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACGGGCGTGCGAGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGG
CCCGGTCCCCCCTGCATGCTGCCGATCCTACTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACT
GGGAATGAACTCAGTACG
Found at i:30774915 original size:26 final size:26
Alignment explanation
Indices: 30774886--30774935 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30774876 CCGGTCCGAT
30774886 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
30774912 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
30774936 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:30775530 original size:158 final size:155
Alignment explanation
Indices: 30775090--30775696 Score: 387
Period size: 159 Copynumber: 3.8 Consensus size: 155
30775080 GTCGGTTGGT
* ** * * * * *
30775090 GAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTTATGTGCGGTTGATCCTGCTACCGC
1 GAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTATGTGCTGTCGATCCTGCTGCCGC
* * * * * *
30775155 AACCCTCGGTCCGGTCTGATCTTAGACTGAGAATTAACTCCGTATGCCTAAGTCAACACATGAAA
66 AA-CCTC-GTCC-GTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
* *
30775220 CAAGCGTGCGGGCGCTGAGCCGGTCGAA
128 CAAGCGTCCGGGCGCTGAGCCGGCCGAA
* * * * ** * ** * * *
30775248 AAGGCATAATGAGCAAGCCAGGAATCAACCCGGTCCCCCTCTACGTGCTACCGGTCCCGCTGCCA
1 GAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTATGTGCTGTCGATCCTGCTGCCG
* * * ** * * * *
30775313 CAATCCTCGATCTGGCTGGGGCTTAGAGAT-GGAATGAACTCCCTACGCCTAAGCCAACCCACGA
65 CAA-CCTCG-TCCGTC-CGATCTTAGA-CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGA
* * *
30775377 AAC-GGACGTCCGGGCGCTTAGCCGGCCGGA
126 AACAAG-CGTCCGGGCGCTGAGCCGGCCGAA
* * *
30775407 GAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCTTGCTGCCGC
1 GAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTATGTGCTGTCGATCCTGCTGCCGC
30775472 AACCTTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
66 AACC-TC-GTCCG-TCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACG-AA
* * ** * * * *
30775537 ACTAGCATGTGGGTGCTCAGTCGACCGAA
127 ACAAGCGTCCGGGCGCTGAGCCGGCCGAA
* * * ** * ** *
30775566 GTGGCATAATGCGTAAGCC-GAGGATCAACCCGGTCCCCCGCTACGTGCTACCGAT-CTCACTGC
1 GAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCC-CTATGTGCTGTCGATCCT-GCTGC
* * * ** * * *
30775629 CACAACCCTCGATCCGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCTACCCAT
63 CGCAA-CCTCG-TCCGTC-CGATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCAC
30775693 GAAA
124 GAAA
30775697 TGGACGTATG
Statistics
Matches: 339, Mismatches: 92, Indels: 35
0.73 0.20 0.08
Matches are distributed among these distances:
157 3 0.01
158 96 0.28
159 172 0.51
160 65 0.19
161 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (155 bp):
GAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTATGTGCTGTCGATCCTGCTGCCGC
AACCTCGTCCGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAA
GCGTCCGGGCGCTGAGCCGGCCGAA
Found at i:30775666 original size:318 final size:317
Alignment explanation
Indices: 30775090--30775829 Score: 881
Period size: 318 Copynumber: 2.3 Consensus size: 317
30775080 GTCGGTTGGT
* * * * * *
30775090 GAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTTATGTGCGGTTGATCCTGCTACCGC
1 GAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGC
* * * * * *
30775155 AACCCTCGGTCCGGTCTGATCTTAGACTGAGAATTAACTCCGTATGCCTAAGTCAACACATGAAA
66 AACCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAA
* * **
30775220 CAAGCGTGCGGGCGCTGAGCCGGTCGAAAAGGCATAATGAGCAAGCCAGGAATCAACCCGGTCCC
131 CAAGCATGCGGGCGCTCAGCCGACCGAAAAGGCATAATGAGCAAGCCAGGAATCAACCCGGTCCC
* * * * * *
30775285 CCTCTACGTGCTACCGGTCCCGCTGCCACAATCCTCGATCTGGCTGGGGCTTAGAGATGGAATGA
196 CCGCTACGTGCTACCGATCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGA
* * *
30775350 ACTCCCTACGCCTAAGCCAACCCACGAAACGGACGTCCGGGCGCTTAGCCGGCCGGA
261 ACTCCCTACGCCTAAGCCAACCCACGAAACGGACGTACGGGCACTCAGCCGGCCGGA
* * * * *
30775407 GAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCTTGCTGCCGC
1 GAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGC
* * *
30775472 AACCTTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
66 AACCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACACG-AA
* * * * ** * *
30775537 ACTAGCATGTGGGTGCTCAGTCGACCGAAGTGGCATAATGCGTAAGCCGAGG-ATCAACCCGGTC
130 ACAAGCATGCGGGCGCTCAGCCGACCGAAAAGGCATAATGAGCAAGCC-AGGAATCAACCCGGTC
*
30775601 CCCCGCTACGTGCTACCGATCTCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAAT
194 CCCCGCTACGTGCTACCGATCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAAT
* * * * * * * *
30775666 GAACTCCCTATGCCTAAGTCTACCCATGAAATGGACGTATGGGCACTCAGTCGGTCGGA
259 GAACTCCCTACGCCTAAGCCAACCCACGAAACGGACGTACGGGCACTCAGCCGGCCGGA
* * * * * * ** * *
30775725 GAGGTAGAATACGTAGGTCGGGGATTGGCCCGGTCCTCCCTGCATGCTGTCGATCCTGCTATCAC
1 GAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGC
* *
30775790 AGCCTTCGGT-CTAGTCTGATCTTAGACTGGGAATGAACTC
66 AACCTTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTC
30775830 TGTATGCTTA
Statistics
Matches: 351, Mismatches: 69, Indels: 5
0.83 0.16 0.01
Matches are distributed among these distances:
317 109 0.31
318 239 0.68
319 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGC
AACCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACACGAAA
CAAGCATGCGGGCGCTCAGCCGACCGAAAAGGCATAATGAGCAAGCCAGGAATCAACCCGGTCCC
CCGCTACGTGCTACCGATCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGA
ACTCCCTACGCCTAAGCCAACCCACGAAACGGACGTACGGGCACTCAGCCGGCCGGA
Found at i:30775680 original size:160 final size:155
Alignment explanation
Indices: 30775175--30775696 Score: 474
Period size: 159 Copynumber: 3.3 Consensus size: 155
30775165 CCGGTCTGAT
* * * * * * *
30775175 CTTAGACTGAGAATTAACTCCGTATGCCTAAGTCAACACATGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTG-GAATGAACTCCCTATGCCTAAGTCAACCCACGAAAC-AGCATGTGGGCGCTCAGC
* * * * *
30775240 CGGTCGAAAAGGCATAATGAGCAAGCCAGGAATCAACCCGGTCCCCCTCTACGTGCTACCGGTCC
64 CGGCCGAAGAGGCATAATGCGCAAGCCAGG-ATCAACCCGGTCCCCC-CTACGTGCTACCGATCT
* *
30775305 CGCTGCCACAATCCTCGATCTGGCTGGGG
127 CGCTGCCACAACCCTCGATCCGGCTGGGG
* * * * * *
30775334 CTTAGAGATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAAC-GGACGTCCGGGCGCTTAG
1 CTTAGA-CTGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAGCATGT--GGGCGCTCAG
* * ** * ** **
30775398 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCT
63 CCGGCCGAAGAGGCATAATGCGCAAGCCA-GGATCAACCCGGTCCCCCCTACGTGCTACCGATCT
* * * * * **
30775463 TGCTGCCGCAACCTTC-AGTCC-GATCCGAT
127 CGCTGCCACAACCCTCGA-TCCGGCT-GGGG
* *
30775492 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAACTAGCATGTGGGTGCTCAG
1 CTTAGACT-GGAATGAACTCCCTATGCCTAAGTCAACCCACG-AAAC-AGCATGTGGGCGCTCAG
* * * *
30775557 TCGACCGAAGTGGCATAATGCGTAAGCCGAGGATCAACCCGGTCCCCCGCTACGTGCTACCGATC
63 CCGGCCGAAGAGGCATAATGCGCAAGCC-AGGATCAACCCGGTCCCCC-CTACGTGCTACCGATC
*
30775622 TCACTGCCACAACCCTCGATCCGGCTGGGG
126 TCGCTGCCACAACCCTCGATCCGGCTGGGG
* *
30775652 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCTACCCATGAAA
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAA
30775697 TGGACGTATG
Statistics
Matches: 281, Mismatches: 67, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
157 6 0.02
158 62 0.22
159 134 0.48
160 71 0.25
161 8 0.03
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAGCATGTGGGCGCTCAGCCG
GCCGAAGAGGCATAATGCGCAAGCCAGGATCAACCCGGTCCCCCCTACGTGCTACCGATCTCGCT
GCCACAACCCTCGATCCGGCTGGGG
Found at i:30775839 original size:26 final size:26
Alignment explanation
Indices: 30775810--30775860 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30775800 CTAGTCTGAT
*
30775810 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30775836 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
30775861 ATCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30775928 original size:13 final size:13
Alignment explanation
Indices: 30775910--30775939 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
30775900 CTGACAGGAG
30775910 AGGCCTACCGGAT
1 AGGCCTACCGGAT
30775923 AGGCCTACCGGAT
1 AGGCCTACCGGAT
30775936 AGGC
1 AGGC
30775940 TTAATACGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.30, G:0.33, T:0.13
Consensus pattern (13 bp):
AGGCCTACCGGAT
Found at i:30776243 original size:26 final size:26
Alignment explanation
Indices: 30776192--30776244 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30776182 CCGGTCTGAT
* *
30776192 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATAAACCCCATATG
*
30776218 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGAC-TGGGAATAAACCCCATATG
30776244 C
1 C
30776245 CTAAGACAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACCCCATATG
Found at i:30776563 original size:26 final size:25
Alignment explanation
Indices: 30776534--30776585 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
30776524 CCGATCCGAT
30776534 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGA-TAGGAATGAACTCCGTATG
* * *
30776560 CTTAGATTGGGATGAACTTCGTATG
1 CTTAGATAGGAATGAACTCCGTATG
30776585 C
1 C
30776586 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (25 bp):
CTTAGATAGGAATGAACTCCGTATG
Found at i:30776697 original size:12 final size:12
Alignment explanation
Indices: 30776677--30776707 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
30776667 CCCCTCTGCG
*
30776677 TGCTGCCGATCC
1 TGCTACCGATCC
30776689 TGCTACCGATCC
1 TGCTACCGATCC
30776701 TGCTACC
1 TGCTACC
30776708 CAACCCTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.42, G:0.19, T:0.26
Consensus pattern (12 bp):
TGCTACCGATCC
Found at i:30777637 original size:26 final size:24
Alignment explanation
Indices: 30777608--30777663 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 24
30777598 GGCTCAAAAT
30777608 CTTACATTGGGAATGAACTCCGTATG
1 CTTACA-T-GGAATGAACTCCGTATG
30777634 CTTAGACATGGAATGAACTCCGTATG
1 CTT--ACATGGAATGAACTCCGTATG
30777660 CTTA
1 CTTA
30777664 AGCCAACCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 1 0.04
26 23 0.82
27 1 0.04
28 3 0.11
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
CTTACATGGAATGAACTCCGTATG
Found at i:30778110 original size:110 final size:110
Alignment explanation
Indices: 30777917--30778123 Score: 351
Period size: 110 Copynumber: 1.9 Consensus size: 110
30777907 GCGTGCTGCC
* * *
30777917 GGTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATTAACTCTCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCCGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* *
30777982 GCCAACCCATGAAACGGGCGTGCGGGCGCTCAACCGGTCGGAAAG
66 GCCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGGTCGGAAAG
* *
30778027 GGTCCCGTTGCCACAACCCTCCGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCCGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
30778092 GCCAACCCACGAAACGGGCGTGCAGGCGCTCA
66 GCCAACCCACGAAACGGGCGTGCAGGCGCTCA
30778124 GCCAGTCAGA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
110 90 1.00
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.17
Consensus pattern (110 bp):
GGTCCCGCTGCCACAACCCTCCGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGGTCGGAAAG
Found at i:30778248 original size:26 final size:26
Alignment explanation
Indices: 30778219--30778271 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30778209 CTGGTCCGAT
30778219 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
30778245 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30778271 C
1 C
30778272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30778617 original size:26 final size:26
Alignment explanation
Indices: 30778588--30778640 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30778578 CCGGTCCGAT
30778588 CTTAGA-TTGAGAATGAACTCCGTATG
1 CTTAGACTTG-GAATGAACTCCGTATG
30778614 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
30778640 C
1 C
30778641 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:30778701 original size:356 final size:362
Alignment explanation
Indices: 30778197--30778864 Score: 836
Period size: 356 Copynumber: 1.8 Consensus size: 362
30778187 TCCTGCATTC
* * * * *
30778197 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGGATGAA
1 GCAACCCACGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGATTGGGAATGAA
* * * * *
30778262 CTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTTAGCCGGCTGGAGAGGCCAAC
66 CTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTTA--CAGCT---G-GGCCAA-
* * * * *
30778327 CGAATAGGCATAATGCACAAGCCGGGGATCAACCCGGTCCCACTCTGCGTGCTGCCGATCCTGCT
124 CGAAGAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCACACTGCGTGCTGCCAATCCTGCT
* *
30778392 ACCACAACCCTCGGT-TCGGT-TGGGCCTTAGACCTG-GAATGAACTCCGTATGCCTAAGCCAAC
189 ACCACAACCCTCGGTCT-GATCT-GACCTTAGA-CTGAGAATGAACTCCGTATGCCTAAGCCAAC
* * *
30778454 CCACGAAATGAGCTTGCGGGCGCTCAGTCGGTCGGGGAGGCAGAATGCACAAGCCATGGATCGGC
251 CCACGAAATGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCACAAGCCATGGATCGGC
30778519 TCAATCCCCCTCTACGTGCTGTCGATCCTGCTGCTGGTCCTGGTGCT
316 TCAATCCCCCTCTACGTGCTGTCGATCCTGCTGCTGGTCCTGGTGCT
*
30778566 GCAACCCACGGTCCGGTCCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGACTT-GGAATGA
1 GCAACCCACGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGA-TTGGGAATGA
*
30778630 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGC-T-CAGCT-GGCC-A-G-AGA
65 ACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTTACAGCTGGGCCAACGAAGA
* * * * **
30778689 GGCAGT-ATGCACAAGCCAGGTATCGACCCGATCCCCCACTGCGTGCTGTCAATCCTGCTACTGC
130 GGCA-TAATGCACAAGCCAGGGATCAACCCGATCCCACACTGCGTGCTGCCAATCCTGCTACCAC
** * *
30778753 AATTCTCGGTCTGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
194 AACCCTCGGTCTGATCTGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * *
30778818 TGAGCGTGCGGGCGCTGAGTCAGTCGGAGAGGCATAATGCGCAAGCC
259 TGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCACAAGCC
30778865 GGGGATCGAC
Statistics
Matches: 259, Mismatches: 35, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
355 3 0.01
356 146 0.56
357 4 0.02
359 1 0.00
360 4 0.02
365 4 0.02
368 1 0.00
369 94 0.36
370 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (362 bp):
GCAACCCACGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGATTGGGAATGAA
CTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTTACAGCTGGGCCAACGAAGAG
GCATAATGCACAAGCCAGGGATCAACCCGATCCCACACTGCGTGCTGCCAATCCTGCTACCACAA
CCCTCGGTCTGATCTGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG
AGCGTGCGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCACAAGCCATGGATCGGCTCAATCCCCC
TCTACGTGCTGTCGATCCTGCTGCTGGTCCTGGTGCT
Found at i:30786064 original size:159 final size:159
Alignment explanation
Indices: 30785774--30786195 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 159
30785764 GCTTAAACAT
* * * * *
30785774 GGAATGAACTCCATATGCCTAAGCCAAGCCATGAAACGAGCGTGCCAGTGCTCAGCCAGCCGGAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCCAGCGCTCAGCCAGCCGAAG
* * * * * *
30785839 AGGTAGAATGCGCAAGCTGGGGATCAGCTCGGTCCCCCCTGCGAGCTGTTGATCCTTGCTATCAC
66 AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGAGCCGTTGATCCTCGCTACCAC
30785904 AACCCTCGGTCCGATCTGATCTTAGACTG
131 AACCCTCGGTCCGATCTGATCTTAGACTG
* * ** *
30785933 GGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGAAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCCAGCGCTCAGCCAGCCGAAG
* * *
30785998 AGGCATAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCCGTTGATCC-CGCTACCA
66 AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGAGCCGTTGATCCTCGCTACCA
* * * **
30786062 CAACCCTCGATCTG-GCTGGGGCTTAGACAT-
130 CAACCCTCGGTCCGATCT-GATCTTAGAC-TG
* * * * * * * * * * * *
30786092 AGAATGAACTCCCTATG---AAGCCAACCAATGAAATGGGTGTGCGAGCACTCAGCCGGTCGGAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCCAGCGCTCAGCCAGCCGAAG
* * *
30786154 AGGCAGAATGCGCAAGCTGCGGATCAGCCCGGTCACCCCTGC
66 AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGC
30786196 TGCCACAACC
Statistics
Matches: 218, Mismatches: 42, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
155 4 0.02
156 67 0.31
158 2 0.01
159 129 0.59
160 16 0.07
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCCAGCGCTCAGCCAGCCGAAG
AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGAGCCGTTGATCCTCGCTACCAC
AACCCTCGGTCCGATCTGATCTTAGACTG
Found at i:30786253 original size:26 final size:26
Alignment explanation
Indices: 30786224--30786274 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30786214 GGTCCGATCA
30786224 TAGACT-GGGAATGAACTCCGTATGCT
1 TAGACTAGGG-ATGAACTCCGTATGCT
30786250 TAGACTAGGGATGAACTCCGTATGC
1 TAGACTAGGGATGAACTCCGTATGC
30786275 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCGTATGCT
Found at i:30786630 original size:26 final size:26
Alignment explanation
Indices: 30786601--30786651 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30786591 CCGATCTGAT
* *
30786601 CTTAGACTTGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30786627 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
30786652 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30788205 original size:26 final size:26
Alignment explanation
Indices: 30788176--30788228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30788166 CCGGTCCGAT
**
30788176 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
30788202 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
30788228 C
1 C
30788229 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:30788593 original size:26 final size:26
Alignment explanation
Indices: 30788543--30788595 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30788533 CCAGTCTGAT
**
30788543 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30788569 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30788595 C
1 C
30788596 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30789297 original size:26 final size:26
Alignment explanation
Indices: 30789259--30789311 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30789249 GGCTCAAAAT
30789259 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30789285 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30789311 C
1 C
30789312 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30790689 original size:26 final size:26
Alignment explanation
Indices: 30790638--30790690 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30790628 CCGGTTTGAT
*
30790638 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCATATG
* * *
30790664 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACGCCATATG
30790690 C
1 C
30790691 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCATATG
Found at i:30791030 original size:26 final size:26
Alignment explanation
Indices: 30790994--30791043 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30790984 CCATTTCGAT
30790994 CTTAGACTGGGAATGAACTCCGTACA
1 CTTAGACTGGGAATGAACTCCGTACA
*
30791020 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
30791044 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACA
Found at i:30791241 original size:26 final size:26
Alignment explanation
Indices: 30791191--30791243 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30791181 CCGGTTTGAT
**
30791191 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30791217 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30791243 C
1 C
30791244 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30791984 original size:26 final size:26
Alignment explanation
Indices: 30791955--30792007 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30791945 CCGGTCTGAT
*
30791955 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
30791981 CTTATACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
30792007 C
1 C
30792008 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:30792662 original size:26 final size:26
Alignment explanation
Indices: 30792622--30792673 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30792612 CGGTCTAATG
* *
30792622 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAAATTCATATGC
* *
30792648 TTAGATTGGGGATGAAATTCATATGC
1 TTAGACTGGGAATGAAATTCATATGC
30792674 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATTCATATGC
Found at i:30794983 original size:158 final size:157
Alignment explanation
Indices: 30794592--30794997 Score: 372
Period size: 158 Copynumber: 2.6 Consensus size: 157
30794582 NNNNNNNNNN
* * * *
30794592 GCTTGTGCATTC-ACCTC-TCTAGCTGACTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAG
1 GCTTGTGCATTCTACCTCTTC-GGCTG-CTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAG
** * * **
30794655 GCATACGAAGTTCATTCCATGTCTAACCCTAGCCGGATCGAGGGATGTGGCAGTGGGACCGACAG
64 GCATACGAAGTTCATTCCATGTCTAAGACTAGCCGGACCGAGGGATGCGGCAGCAGGACCGACAG
30794720 CACGCAGAGGGGGATCAAACCGATCCCCG
129 CACGCAGAGGGGGATCAAACCGATCCCCG
*** * * * * * * * ** * *
30794749 GCTTGCATATTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCATTTCATGGGTTAACTTTGA
1 GCTTGTGCATTCTACCTCTTCG-GCTGCTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAGG
* * * * * * * *
30794814 CAAACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACA
65 CATACGAAGTTCATT-CCATGTCTAAGACTAG-CCGGACCGAGGGATGCGGCAGCAGGACCGACA
** * *
30794878 GCACGCAGA-GGGGATTGAGCC-AGTCCTCG
128 GCACGCAGAGGGGGATCAAACCGA-TCCCCG
* *
30794907 GCTTGTGCATTCTACCTCTTCGGCCTGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
1 GCTTGTGCATTCTACCTCTTCGG-CTGCTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAGG
30794972 CATACGAAGTTCATTCCATGTCTAAG
65 CATACGAAGTTCATTCCATGTCTAAG
30794998 CATACGGAGT
Statistics
Matches: 187, Mismatches: 54, Indels: 15
0.73 0.21 0.06
Matches are distributed among these distances:
157 12 0.06
158 136 0.73
159 39 0.21
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
GCTTGTGCATTCTACCTCTTCGGCTGCTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAGGC
ATACGAAGTTCATTCCATGTCTAAGACTAGCCGGACCGAGGGATGCGGCAGCAGGACCGACAGCA
CGCAGAGGGGGATCAAACCGATCCCCG
Found at i:30795001 original size:26 final size:26
Alignment explanation
Indices: 30794971--30795023 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30794961 GTTGGCTTAG
30794971 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30794997 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30795023 G
1 G
30795024 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30795893 original size:26 final size:26
Alignment explanation
Indices: 30795857--30795906 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
30795847 GTTGACTTAG
30795857 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
30795883 GCATATGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
30795907 GAGATCGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30796383 original size:158 final size:157
Alignment explanation
Indices: 30795883--30796383 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 157
30795873 CCTAGTCTAA
* * * * *
30795883 GCATATGAAGTTCATTCCCAGTCTGAGATCGGATCAGA-CTAAGGGTTGCGATAGCAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATC-GAGGGTTGCGATAGCAGGATCGAC
* * * * ** *
30795947 AGCATGCAAGAGGGATTGAATCGATCCCCGGCTTGTGCATTCTACCTCTCTAGCTGACTGAGCGC
65 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTACCTCTCTGGCTG-CTGAGCGC
* * *
30796012 CCGTACACCCATTTCGTGGGTTGGCTTAG
129 CCGAACGCTCATTTCGTGGGTTGGCTTAG
*** * * * ** ** * *
30796041 GCATACGAAGTTCATT-CCATGTCTAACCCTAG-TCGGATCGAGGGATGTGGCAGTGGGACCAAC
1 GCATACGAAGTTCATTCCCA-GTCTAAGATTGGATCGGATCGAGGGTTGCGATAGCAGGATCGAC
*** * * * * *
30796104 AGCACGCAGAGGGGGATCG-GACCGATCCCCGGCTTGCATATTATGCCTCTCTGATCGGCTCAGC
65 AGCACGCAG-GGGGGATCGAG-CCGATCCCCGGCTTGTGCATTCTACCTCTCTG-GCTGCTGAGC
* * ** *
30796168 ACCCGAACGCTCATTTCATGGGTTAACTTTG
127 GCCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * *
30796199 ACAAACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGATAGCAGGATCGACA
30796264 GCACGCAGGGGGGATCGAGCC-AGTCCCCGGCTTGTGCATTCTACCTCT-TCGGCCTGCTGAGCG
66 GCACGCAGGGGGGATCGAGCCGA-TCCCCGGCTTGTGCATTCTACCTCTCT-GG-CTGCTGAGCG
* *
30796327 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGAACGCTCATTTCGTGGGTTGGCTTAG
30796357 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
30796384 CATACGGAGT
Statistics
Matches: 258, Mismatches: 73, Indels: 24
0.73 0.21 0.07
Matches are distributed among these distances:
157 34 0.13
158 186 0.72
159 38 0.15
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGATAGCAGGATCGACA
GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTACCTCTCTGGCTGCTGAGCGCCC
GAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:30796394 original size:26 final size:26
Alignment explanation
Indices: 30796357--30796409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30796347 GTTGGCTTAG
30796357 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30796383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30796409 G
1 G
30796410 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30797094 original size:26 final size:26
Alignment explanation
Indices: 30797058--30797110 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30797048 GTTGGCTTAG
30797058 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30797084 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30797110 G
1 G
30797111 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30797258 original size:26 final size:26
Alignment explanation
Indices: 30797228--30797280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30797218 GTTGACTTAG
*
30797228 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
30797254 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
30797280 G
1 G
30797281 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:30798614 original size:26 final size:26
Alignment explanation
Indices: 30798575--30798627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30798565 GTTGACTTAG
30798575 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30798601 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30798627 G
1 G
30798628 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30799112 original size:26 final size:26
Alignment explanation
Indices: 30799075--30799127 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30799065 GTTGGCTTAG
30799075 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30799101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30799127 G
1 G
30799128 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30799453 original size:159 final size:158
Alignment explanation
Indices: 30799177--30799691 Score: 526
Period size: 158 Copynumber: 3.3 Consensus size: 158
30799167 TAGGATTGGT
* * * * * * * *
30799177 AGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACC-C-TCTGGCCAGATGAGC
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-AGTC-GGTTAGC
* * * * *
30799239 GCCTGCATGCCCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAAC
64 GCCCGAATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
*
30799304 CGGACTGAGGGTTGTGGCAGTGGGACCGAC
129 CGGACTGAGGGTTGTGGCAGTGGGATCGAC
* * *
30799334 AGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTGCGCATTATGCCTC-TCAAG-CTGGCTTAG
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-AGTC-GG-TTAG
* * **
30799397 CGCCCGAATGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCA
63 CGCCCGAATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA
* * *
30799460 GACCGGA-TCGAGGGTTGCGGCAATAGGATCGAC
127 -ACCGGACT-GAGGGTTGTGGCAGTGGGATCGAC
* * * * * * *
30799493 AGCACGCAGA-GGGGATCGGGTCGGTCCTCGGCTTACGCATTTTGCCTCTTCTGTCGGTTAGCGC
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTCGGTTAGCGC
* * * **
30799557 CCGTACGCTCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
66 CCGAATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * *
30799622 GACTGAGGGTTGTGGCAGCGAGATCGGC
131 GACTGAGGGTTGTGGCAGTGGGATCGAC
* *
30799650 AGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCTCATT
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
30799692 TCGTGCGTTG
Statistics
Matches: 289, Mismatches: 57, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 94 0.33
158 95 0.33
159 94 0.33
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTCGGTTAGCGC
CCGAATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
GACTGAGGGTTGTGGCAGTGGGATCGAC
Found at i:30799610 original size:157 final size:159
Alignment explanation
Indices: 30799250--30799684 Score: 445
Period size: 157 Copynumber: 2.7 Consensus size: 159
30799240 CCTGCATGCC
* * *
30799250 CGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGG
1 CGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACCGGACTGAGGG
* * * *
30799315 TTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTGCGCATTATGC
66 TTGCGGCAATAGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTACGCATTATGC
*
30799380 CTCTCAAGCTGGCTTAGCGCCCGAATGCT
131 CTCTCAAGCTGGCTTAGCGCCCGAACGCT
* * *
30799409 CGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-TCGA
1 CGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCACCA-ACCGGACT-GA
* * * * ** * * *
30799471 GGGTTGCGGCAATAGGATCGACAGCACGCAGA-GGGGATCGGGTCGGTCCTCGGCTTACGCATTT
63 GGGTTGCGGCAATAGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTACGCATTA
* *
30799535 TGCCTCTTC-TG-TCGG-TTAGCGCCCGTACGCT
128 TGCCTC-TCAAGCT-GGCTTAGCGCCCGAACGCT
* * **
30799566 CGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGG
1 CGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACCGGACTGAGGG
* ** * * * * * *
30799631 TTGTGGC-AGCGAGATCGGCAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTT
66 TTGCGGCAATAG-GACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTT
30799685 GCTCATTTCG
Statistics
Matches: 228, Mismatches: 38, Indels: 21
0.79 0.13 0.07
Matches are distributed among these distances:
156 5 0.02
157 85 0.37
158 58 0.25
159 77 0.34
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (159 bp):
CGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACCGGACTGAGGG
TTGCGGCAATAGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTACGCATTATGC
CTCTCAAGCTGGCTTAGCGCCCGAACGCT
Found at i:30799744 original size:26 final size:26
Alignment explanation
Indices: 30799708--30799760 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30799698 GTTGGCTTAG
*
30799708 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30799734 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30799760 G
1 G
30799761 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30800823 original size:26 final size:26
Alignment explanation
Indices: 30800774--30800826 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30800764 GTTGGCTTAG
**
30800774 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCAACCCATGTCTAA
30800800 GCATACGGAGTTCACACCCA-GTCTAA
1 GCATACGGAGTTCA-ACCCATGTCTAA
30800826 G
1 G
30800827 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCATGTCTAA
Found at i:30801533 original size:26 final size:26
Alignment explanation
Indices: 30801497--30801549 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30801487 GTTGACTTAG
30801497 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
30801523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30801549 G
1 G
30801550 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30801817 original size:158 final size:158
Alignment explanation
Indices: 30801563--30801860 Score: 435
Period size: 158 Copynumber: 1.9 Consensus size: 158
30801553 AGATTGGACC
*
30801563 GAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATT
1 GAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATT
* * * *
30801628 CTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 CCGCCTCTCCGGTCGGCTGAGCGCCCACACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGT
30801692 TCATTCCATGTCTATGCCCAAGCCAGATT
130 TCATTCCATGTCTATGCCCAAGCCAGATT
* * * *
30801721 GAGGGTTGTGGCAGCAGGA-CTGACAGCACGTAGAGGGGGACCGGGCCGATCCCC-GACTTGTGC
1 GAGGGTTGCGACAGCAGGATC-GACAGCACGCAG-GGGGGACCGGGCCGATCCCCAG-CTTGCGC
30801784 ATTCCGCCTCTCCGGCTC-GCTGAGCG-CCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
63 ATTCCGCCTCTCCGG-TCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
30801847 AGTTCATTCCATGT
127 AGTTCATTCCATGT
30801861 TTAAGCATAC
Statistics
Matches: 126, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
157 1 0.01
158 75 0.60
159 48 0.38
160 2 0.02
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (158 bp):
GAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATT
CCGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTATGCCCAAGCCAGATT
Found at i:30801891 original size:26 final size:26
Alignment explanation
Indices: 30801839--30801891 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30801829 GTTGGCTTAG
*
30801839 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30801865 GCATACGGAGTTCATTCGCA-GTCTAA
1 GCATACGGAGTTCATTC-CATGTCTAA
30801891 G
1 G
30801892 AGTCTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30802782 original size:26 final size:26
Alignment explanation
Indices: 30802746--30802798 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30802736 GTTGGCTTAG
*
30802746 GCATAAGGAGTTCATTCC-ATGTCTAA
1 GCATAAAGAGTTCATTCCTA-GTCTAA
30802772 GCATAAAGAGTTCATTCCTAGTCTAA
1 GCATAAAGAGTTCATTCCTAGTCTAA
30802798 G
1 G
30802799 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCTAGTCTAA
Found at i:30802799 original size:185 final size:190
Alignment explanation
Indices: 30802487--30802968 Score: 489
Period size: 185 Copynumber: 2.5 Consensus size: 190
30802477 TACCACCCGT
* ** * * * *
30802487 TCGATCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACGCTCTTTTCGTGGG
1 TCGATCCCCAGCTTGTGCATTCTGCCTCTC-CGTCGGCTGAGC-ACCGCACGCTCGTTTCGTGGG
* * **
30802552 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCACATGGAGTTCATTCCCAGTCTAAGAT
64 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACAAAGAGTTCATTCCCAGTCTAAGAT
* * * * * *
30802616 CTGACCGGACTGAAGGTTGCGGCAGCAGGATC-G-A-CAGCA-C-GCATG-G-GGGGACCGGG
128 CGGACCAGACCGAAGGTTACGACAGCAGGACCAGCAGCAGCAGCAGCATGAGAGGGGACCGGG
* *
30802672 TCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCTGCACGCCCGTTTCGTGGG
1 TCGATCCCCAGCTTGTGCATTCTGCCTCTCCG-TCGGCTGAGCACC-GCACGCTCGTTTCGTGGG
* * *
30802737 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATAAAGAGTTCATTCCTAGTCTAAGATC
64 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACAAAGAGTTCATTCCCAGTCTAAGATC
* * * *
30802802 GGACCAGACCGAGGGTTACGACAGTAGGACCAGCAGCAGGATTGGCAGCATGCAGAGGGGATCGG
129 GGACCAGACCGAAGGTTACGACAGCAGGACCAGCAGCAGCA---GCAGCATG-AGAGGGGACCGG
30802867 G
190 G
* * * * *
30802868 -CTGATCCCTAGCTTGTGCATTCTACCTCTTCGTCGGTTGAGTGC-CCGCACGCTCGTTCCGTGG
1 TC-GATCCCCAGCTTGTGCATTCTGCCTCTCCGTCGGCTGA--GCACCGCACGCTCGTTTCGTGG
* *
30802931 GGTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGC
63 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
30802969 CCCAGTCGGA
Statistics
Matches: 244, Mismatches: 36, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
184 6 0.02
185 128 0.52
186 1 0.00
187 1 0.00
188 4 0.02
192 1 0.00
193 5 0.02
195 58 0.24
196 38 0.16
197 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (190 bp):
TCGATCCCCAGCTTGTGCATTCTGCCTCTCCGTCGGCTGAGCACCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACAAAGAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAAGGTTACGACAGCAGGACCAGCAGCAGCAGCAGCATGAGAGGGGACCGGG
Found at i:30803676 original size:26 final size:26
Alignment explanation
Indices: 30803626--30803678 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30803616 GTTGGCTTAG
*
30803626 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
30803652 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
30803678 G
1 G
30803679 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:30803872 original size:26 final size:26
Alignment explanation
Indices: 30803836--30803886 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30803826 TTGACTTAGG
30803836 CATACGGAGTTCATACCCAGTCTAAC
1 CATACGGAGTTCATACCCAGTCTAAC
*
30803862 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATACCCAGTCTAA
30803887 GATCTAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATACCCAGTCTAAC
Found at i:30804213 original size:26 final size:26
Alignment explanation
Indices: 30804177--30804255 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
30804167 GTTGGCTTAG
*
30804177 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
30804203 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
30804229 GCATACAAAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
30804255 G
1 G
30804256 AGTTTGAGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:30804956 original size:26 final size:26
Alignment explanation
Indices: 30804927--30804978 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30804917 GTTGACTTAG
* *
30804927 GCATATGGATTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
30804953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
30804979 CATCGAACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:30805306 original size:129 final size:129
Alignment explanation
Indices: 30805110--30805365 Score: 314
Period size: 129 Copynumber: 2.0 Consensus size: 129
30805100 GAGGGTTGTG
* * * * *
30805110 GCAGCGGGACTGGTAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTACGCCTTATGCCTCTC
1 GCAGCAGGACTGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCCTCTC
** *
30805175 CGGCCGGGTCAACACCCACACTCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
66 CGGCCGACTCAACACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
30805239 GCAGCAGGATTGGCAGCATGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCGTATTCTGCCTCTC
1 GCAGCAGGACTGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCCTCTC
* * *** * *
30805304 CGGTCGACTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCC
66 CGGCCGACTCAACACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
30805366 ATGTCTAAGC
Statistics
Matches: 105, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
129 105 1.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (129 bp):
GCAGCAGGACTGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCCTCTC
CGGCCGACTCAACACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
Found at i:30805560 original size:26 final size:26
Alignment explanation
Indices: 30805531--30805583 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30805521 GTTGACTTAG
30805531 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
30805557 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30805583 G
1 G
30805584 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30805866 original size:159 final size:156
Alignment explanation
Indices: 30805614--30806058 Score: 430
Period size: 159 Copynumber: 2.8 Consensus size: 156
30805604 ACGATAGCAG
* ** * * * * *
30805614 GATCGACAGCACGTAGGGGGGATTGGGCTGATCTCCGACTTGCGAATTTTGCCTCTCCGGTCAGC
1 GATCGACAGCACGCAGGGGGGACCGGGC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGC
* *
30805679 TGAGCACCCGCACG-TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 TAAGCACCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * * **
30805743 TCCAG-TCAGACTGAGGGTTGTGGTAGCGG
129 T-CAGACCAGACCGAGGGTCGCGGCAG-AA
** * *
30805772 GA-CTGGTAGCATGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCG
1 GATC-GACAGCACGCAG-GGGGGACCGGG-CGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCG
* * * * * * *
30805836 GCTCAGCACCCGAATGCTCGTTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCA-ATCTAA
63 GCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* *
30805900 GATCAGACCGGACCGAGGGTCGCGGCAGAA
127 GCTCAGACCAGACCGAGGGTCGCGGCAGAA
* * ** * *
30805930 GATCGACAGCACGCAGGGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTGCCTCTAAGGCCGAC
1 GATCGACAGCACGCAGGGGGGACCGGGCGA-TCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGC
* * *
30805995 TAAGCGCCCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGC
65 TAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
30806059 ATACGAAGTT
Statistics
Matches: 230, Mismatches: 48, Indels: 19
0.77 0.16 0.06
Matches are distributed among these distances:
156 4 0.02
157 91 0.40
158 24 0.10
159 106 0.46
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (156 bp):
GATCGACAGCACGCAGGGGGGACCGGGCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCT
AAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTC
AGACCAGACCGAGGGTCGCGGCAGAA
Found at i:30806060 original size:26 final size:25
Alignment explanation
Indices: 30806031--30806082 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
30806021 GTTGGCTTAG
*
30806031 GCATACGGAGTTCATTACATGTCTAA
1 GCATACGAAGTTCATTACA-GTCTAA
*
30806057 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTACAGTCTAA
30806082 G
1 G
30806083 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTACAGTCTAA
Found at i:30808535 original size:26 final size:26
Alignment explanation
Indices: 30808505--30808557 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30808495 GTTGGCTTAG
* *
30808505 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
30808531 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
30808557 G
1 G
30808558 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:30808703 original size:196 final size:183
Alignment explanation
Indices: 30808442--30808910 Score: 500
Period size: 196 Copynumber: 2.5 Consensus size: 183
30808432 TCAGTCCCTG
* * * *
30808442 GCTTGCGCATTTTGCCTCTCCGACCGACTGAG-GCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
1 GCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
30808506 CATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCAGACCGGGCC
66 CATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCAGAACGGACC
* * * *
30808571 GAGGGTGTTGGCAACAGAACCAGCAACAGGATTGGCAGCATGCAGGAGGGGACCAGGCCGATCTC
131 GA-GG-GTT-G---C-G-A-CAG---CAGGATCGGCAGCACGCAGG-GGGGACC-GACCGATCCC
30808636 CA
182 CA
* ** * **
30808638 GCTTGCACATTCTGCCTCTTCGGTCGGTTGAG-TGCCGCACGCTCGTTTCATGGGTTGGCTTAGG
1 GCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* ** * * * *
30808702 CATACGGAGTTCATCCCCA-GTCTAAGTGTACGGAGTTCATTCCCAGTCTAAGATCGGAATGGAC
66 CATACGGAGTTCAT-TCCATGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCAGAACGGAC
* *
30808766 TGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGGGGGGACCGACCGATCCCCA
130 CGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGACCGACCGATCCCCA
*
30808820 GCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACG-TCCATTT--TGTGGTTGGCTTA
1 GCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCT-CGTTTCATG-GGTTGGCTTA
*
30808882 GGCATAGGGAGTTCATTCCATGTCTAAGC
64 GGCATACGGAGTTCATTCCATGTCTAAGC
30808911 CCCAGTCAGA
Statistics
Matches: 234, Mismatches: 34, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
181 5 0.02
182 71 0.30
183 18 0.08
184 18 0.08
187 2 0.01
188 1 0.00
189 1 0.00
190 1 0.00
193 1 0.00
194 3 0.01
195 2 0.01
196 108 0.46
197 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (183 bp):
GCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCAGAACGGACC
GAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGACCGACCGATCCCCA
Found at i:30808734 original size:26 final size:26
Alignment explanation
Indices: 30808704--30808753 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30808694 GGCTTAGGCA
30808704 TACGGAGTTCATCCCCAGTCTAAGTG
1 TACGGAGTTCATCCCCAGTCTAAGTG
*
30808730 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
30808754 ATCGGAATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGTG
Found at i:30809086 original size:27 final size:27
Alignment explanation
Indices: 30809056--30809111 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
30809046 GGGTTGATTT
30809056 AGGCATATAGA-GTTCATCCCCAGTCTA
1 AGGCATA-AGACGTTCATCCCCAGTCTA
* *
30809083 AGGCATACGACGTTCATTCCCAGTCTA
1 AGGCATAAGACGTTCATCCCCAGTCTA
30809110 AG
1 AG
30809112 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (27 bp):
AGGCATAAGACGTTCATCCCCAGTCTA
Found at i:30810468 original size:26 final size:26
Alignment explanation
Indices: 30810432--30810484 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30810422 GTTGGCTTAG
30810432 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30810458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30810484 G
1 G
30810485 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30811573 original size:26 final size:26
Alignment explanation
Indices: 30811524--30811576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30811514 GTTGACTTAG
**
30811524 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
30811550 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
30811576 G
1 G
30811577 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:30812283 original size:26 final size:26
Alignment explanation
Indices: 30812246--30812296 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30812236 GATGACTTAG
30812246 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
30812272 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
30812297 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30812759 original size:26 final size:26
Alignment explanation
Indices: 30812729--30812781 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30812719 CTTGGCTTAG
*
30812729 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30812755 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30812781 G
1 G
30812782 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30819414 original size:26 final size:26
Alignment explanation
Indices: 30819364--30819415 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30819354 TTGACTTAGC
* **
30819364 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAACCTAAG
*
30819390 CATACAGAGTTCATTCCCAACCTAAG
1 CATACAGAGTTCATCCCCAACCTAAG
30819416 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAACCTAAG
Found at i:30819687 original size:158 final size:159
Alignment explanation
Indices: 30819452--30819889 Score: 496
Period size: 158 Copynumber: 2.8 Consensus size: 159
30819442 ACAGGATCGG
* * * * * * * *
30819452 CAGCACGCA-GGGGGATCGGGCCAAT-CTCGGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGCA
1 CAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCA
* * * * *
30819515 CCCGTACGCCCATTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTTTAAGCACCAG-C
66 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
** * *** *
30819579 CGGATGGAGGGTTATGGCAGTGGGACCG-
131 CGGACCGAGGATTACAACAGTAGGACCGA
* * * *
30819607 CAGCACGCTGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTCAGC
1 CAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
* * *
30819672 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAG-ATCAG
65 ACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAG
* *
30819735 ACCGGACCGAGGATTGCAACAGTAGGATCGA
129 ACCGGACCGAGGATTACAACAGTAGGACCGA
* *
30819766 CAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCA-TACTGCCTCTCCGGCC-AGCTGAG
1 CAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTA-TGCCTCTCCGGCCGA-CTGAG
*
30819829 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 CACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30819890 TACGGAGTTC
Statistics
Matches: 235, Mismatches: 38, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
155 8 0.03
157 22 0.09
158 193 0.82
159 12 0.05
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (159 bp):
CAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCA
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CGGACCGAGGATTACAACAGTAGGACCGA
Found at i:30819897 original size:26 final size:26
Alignment explanation
Indices: 30819861--30819913 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30819851 GTTGGCTTAG
30819861 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30819887 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30819913 G
1 G
30819914 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30820268 original size:26 final size:26
Alignment explanation
Indices: 30820231--30820283 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30820221 GTTGACTTAG
30820231 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
30820257 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
30820283 G
1 G
30820284 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30820343 original size:356 final size:344
Alignment explanation
Indices: 30819608--30820465 Score: 872
Period size: 356 Copynumber: 2.4 Consensus size: 344
30819598 GTGGGACCGC
* * * * * *
30819608 AGCACGCTGAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTCAGCG
1 AGCACGCAGAGGGGGACCGAGCCGAT-CCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCG
* **
30819673 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA-GATCAGAC
65 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGGCCCAG-C
* *** * * *
30819737 CGGACCGAGGATTGCAACAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTG
128 CGGACCGAGGGTTGTGGCAGTAGGATCGACAACACGCAGGGGGGACCGGGTCGATCCCCGGCTTG
* * *
30819802 CGCATACTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
193 CGCATACTGCCTCTCCAGCCAGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
30819867 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGCGGG
258 GAAGTTCATCCCATATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
30819932 TTGCAGCACCAGGACCAGCAGT
323 TTGCAGCACCAGGACCAGCAGT
** *
30819954 AGGATCGACCAGCACGTAGAGGGGATTGAGCCGATCCATGGCTTGTGCATTCTGCCTCCCCGACC
1 A-G--C-A-C-GCA-G-AG-GGGGACCGAGCCGATCC-TGGCTTGTGCATTCTGCCTCTCCGACC
* *
30820019 GACTGAGTCGCCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCAGGTCTA
56 GACTGAG-CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTA
* * * * * *
30820084 AGGCCCAGCCGAACCGAGGGTTGTGGTAGTAGGATCGGCAACACGTAGAGTGGGACCGGGTTGAT
119 AGGCCCAGCCGGACCGAGGGTTGTGGCAGTAGGATCGACAACACGCAG-GGGGGACCGGGTCGAT
* *
30820149 CCCCGGCTTGTGCATTATGCCTATTCGGTTGGCCTCTCCAGCCGGCTAAGCACCCGCACGCTCGT
183 CCCCGGC-T-TGC-----G-C-ATAC---T-GCCTCTCCAGCCAGCTAAGCACCCGCACGCTCGT
*
30820214 TTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAAGCATACAGAGTTCATTCCCAG
235 TTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATATCTAAGCATACAGAGTTCATTCCCAG
* *
30820278 TCTAAGATCGGACCAGACCGAGGGTTGC-G-ATGCAGGATC-G-A-T
299 TCTAAGATCGGACCAGACCGAGGGTTGCAGCA-CCAGGACCAGCAGT
* * * *
30820320 AGCACGCAG-GGGGGACCGAGCCGATCCTCGGCTTATGCATTCTGCC-CTCTGACTGGCTGAGCG
1 AGCACGCAGAGGGGGACCGAGCCGATCCT-GGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCG
* * * * *
30820383 CCTGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGG
65 CCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGGCCCAGC
* *
30820447 TGGACGGAGGGTTGTGGCA
128 CGGACCGAGGGTTGTGGCA
30820466 ACGGGACCCT
Statistics
Matches: 421, Mismatches: 60, Indels: 54
0.79 0.11 0.10
Matches are distributed among these distances:
346 1 0.00
347 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
352 2 0.00
353 2 0.00
354 75 0.18
355 55 0.13
356 114 0.27
357 24 0.06
358 1 0.00
359 4 0.01
360 3 0.01
361 1 0.00
362 1 0.00
363 1 0.00
364 1 0.00
365 2 0.00
366 5 0.01
367 1 0.00
368 2 0.00
369 8 0.02
370 111 0.26
371 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (344 bp):
AGCACGCAGAGGGGGACCGAGCCGATCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGGCCCAGCCGG
ACCGAGGGTTGTGGCAGTAGGATCGACAACACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGC
ATACTGCCTCTCCAGCCAGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
GTTCATCCCATATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
CAGCACCAGGACCAGCAGT
Found at i:30820575 original size:112 final size:111
Alignment explanation
Indices: 30820379--30820585 Score: 333
Period size: 112 Copynumber: 1.9 Consensus size: 111
30820369 TGACTGGCTG
* * * *
30820379 AGCGCCTGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCC
* *
30820444 AGGTGGACGGAGGGTTGTGGCAACGGGACCCTCTCCGACCGGTTGA
66 AGCTGGACCGAGGGTTGTGGCAACGGGACCCTCTCCGACCGGTTGA
30820490 AGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCCATAGAGAGTTCATTCCATGTCTAAGCCC
1 AGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG-CATAGAGAGTTCATTCCATGTCTAAGCCC
* *
30820555 TAGCTGGACCGAGGGTTGTGGCAGCGGGACC
65 CAGCTGGACCGAGGGTTGTGGCAACGGGACC
30820586 GGCAGCACGC
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
111 32 0.37
112 55 0.63
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (111 bp):
AGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCC
AGCTGGACCGAGGGTTGTGGCAACGGGACCCTCTCCGACCGGTTGA
Found at i:30821610 original size:26 final size:26
Alignment explanation
Indices: 30821560--30821612 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30821550 GTTGACTTAG
*
30821560 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
30821586 GCATATGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30821612 G
1 G
30821613 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30821808 original size:12 final size:12
Alignment explanation
Indices: 30821793--30821823 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
30821783 TGAGGGTTGT
30821793 GGTAGCAGGATC
1 GGTAGCAGGATC
30821805 GGTAGCAGGATC
1 GGTAGCAGGATC
*
30821817 GGCAGCA
1 GGTAGCA
30821824 CGCAGAGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.42, T:0.13
Consensus pattern (12 bp):
GGTAGCAGGATC
Done.