Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 334 of 402
Found at i:30822280 original size:157 final size:158
Alignment explanation
Indices: 30821940--30822282 Score: 372
Period size: 157 Copynumber: 2.2 Consensus size: 158
30821930 CCCAATCTAA
* *
30821940 GCATACAGAGTTCATTCC-TAGTCTAAGATCGGATCAGACCGAAGGTTGCGGTAGCAGGATCGAT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAAGGTTGCGGTAGCAGGATCGAC
* * *
30822004 AGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTGCACATTATGTCTCTCCGACCGACGGAGCA
65 AGCACG-ACAGGGGGACCAGGCTGATCCCCAGCTTGCACATTATGCCTCTCCGACCGACGGAGCA
30822069 CCCGTACGCTCGTTTCGTAGGTTGACTTAG
129 CCCGTACGCTCGTTTCGTAGGTTGACTTAG
* * *
30822099 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAAGGTTGCGGTAGCAGGATCGAC
* ** * * * *** * * *
30822163 AGCACG-CAGGGGGACC-GGGTCGATCCCCAGCTTGTGCGTTCTGCCTCTTCGGTTGGCTGAGCG
65 AGCACGACAGGGGGACCAGGCT-GATCCCCAGCTTGCACATTATGCCTCTCCGACCGACGGAGCA
* * *
30822226 CTCGTATGCTCGTTTCG-AGGGTTGTCTTAG
129 CCCGTACGCTCGTTTCGTA-GGTTGACTTAG
** *
30822256 GCATATGGAGTTTATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
30822283 CATACGGGGT
Statistics
Matches: 153, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
156 7 0.05
157 83 0.54
159 61 0.40
160 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAAGGTTGCGGTAGCAGGATCGACA
GCACGACAGGGGGACCAGGCTGATCCCCAGCTTGCACATTATGCCTCTCCGACCGACGGAGCACC
CGTACGCTCGTTTCGTAGGTTGACTTAG
Found at i:30822286 original size:26 final size:26
Alignment explanation
Indices: 30822256--30822308 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30822246 GTTGTCTTAG
* *
30822256 GCATATGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30822282 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30822308 G
1 G
30822309 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30822578 original size:12 final size:13
Alignment explanation
Indices: 30822561--30822589 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
30822551 TGCGTATTAA
30822561 GCCTATCC-GTAG
1 GCCTATCCGGTAG
30822573 GCCTATCCGGTAG
1 GCCTATCCGGTAG
30822586 GCCT
1 GCCT
30822590 CTCCTGTCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.14, C:0.34, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCTATCCGGTAG
Found at i:30823055 original size:159 final size:158
Alignment explanation
Indices: 30822871--30823429 Score: 475
Period size: 159 Copynumber: 3.5 Consensus size: 158
30822861 AGATCGGTAC
** * * * * *
30822871 CACGTAGCGGGGGACCGGGTTGATCCTCGGCTTACGCATTATGCCACTCCGGTCGACTGAGCACC
1 CACGTAG-GGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCGCC
* * * * *
30822936 CACATGCTAGTTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCG
65 CGCACGCTAG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
*
30823001 AACCGAAGGTTGCGGCAGCAAGATCGACAG
129 AACCGAAGGTTGCGGCAGCAGGATCGACAG
* * * *
30823031 CACGCAGGGGGGACCAGGCCGATCC-CTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCC
1 CACGTAGGGGGGACCGGGCCGATCCTC-GGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCGCC
* ** * * * **
30823095 CGGACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATCTCTAAGCCCCAG-CC
65 CGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACC
* * * * **
30823158 -AGATCG-AGGATTGTGGCAGCGGGACCGGTAG
128 GA-ACCGAAGG-TTGCGGCAGCAGGATCGACAG
* * * * * * *
30823189 CACGTAGAGGGGGACCGGGCTGATTCCT-GGCTTGCTCATTATGCCTTTTCGACCGGCTCAGCGC
1 CACGTAG-GGGGGACCGGGCCGA-TCCTCGGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCGC
* * * * *
30823253 CCGCACGCTTGTTTCATGTGTTGACTTAGGCATACGGAGTTAATTCTCAGTCTAAGATCAGACCG
64 CCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * *
30823318 GACCGAGGGTTGCGGCAGCAGGATCAACAG
129 AACCGAAGGTTGCGGCAGCAGGATCGACAG
* * * * * * * *
30823348 CACATAAGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAA-TGCC
1 CACGTAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGGCCGGCT-AAGCGCC
* *
30823412 CGCACGCTTGTTTTGTGG
65 CGCACGCTAGTTTCGTGG
30823430 TTTGTGGCAG
Statistics
Matches: 309, Mismatches: 76, Indels: 30
0.74 0.18 0.07
Matches are distributed among these distances:
157 10 0.03
158 122 0.39
159 164 0.53
160 13 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CACGTAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCGCCC
GCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
CCGAAGGTTGCGGCAGCAGGATCGACAG
Found at i:30823133 original size:158 final size:158
Alignment explanation
Indices: 30822947--30823402 Score: 479
Period size: 159 Copynumber: 2.9 Consensus size: 158
30822937 ACATGCTAGT
* * *
30822947 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAAGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTT
* * *
30823012 GCGGCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTC
66 GCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTC
* *
30823077 TCCGGCCGGCTAAGCGCCCGGACGCCCG
131 TCCGACCGGCTAAGCGCCCGCACGCCCG
* * * ** *
30823105 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATCTCTAAGCCCCAG-CC-AGATCG-AG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGA-ACCGAAG
* * * ** * * * *
30823166 GATTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCGGGCTGATTCCTGGCTTGCTCATTAT
63 G-TTGCGGCAGCAGGATCGACAGCACGTAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCT
* * * **
30823231 GCCTTTTCGACCGGCTCAGCGCCCGCACGCTTG
126 GCCTCTCCGACCGGCTAAGCGCCCGCACGCCCG
* * * * * *
30823264 TTTCATGTGTTGACTTAGGCATACGGAGTTAATTCTCAGTCTAAGATCAGACCGGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTT
* * * ** *
30823329 GCGGCAGCAGGATCAACAGCACATAAGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTC
66 GCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTC
30823394 TCCGACCGG
131 TCCGACCGG
30823403 TTGAATGCCC
Statistics
Matches: 233, Mismatches: 56, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 7 0.03
158 105 0.45
159 117 0.50
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTT
GCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTC
TCCGACCGGCTAAGCGCCCGCACGCCCG
Found at i:30823584 original size:26 final size:26
Alignment explanation
Indices: 30823548--30823597 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30823538 GACTTAGGCA
30823548 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
30823574 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
30823598 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:30824065 original size:343 final size:342
Alignment explanation
Indices: 30823434--30824257 Score: 1082
Period size: 343 Copynumber: 2.4 Consensus size: 342
30823424 TTGTGGTTTG
* *
30823434 TGGCAGCGAGATC-AGCAGCACACAGCGGGGGACCGAGCTGATCCCCGGCTTACGCATTATGCCT
1 TGGCAGCGAGATCGA-CAGCACGCAGCGGGGGACCGAGCTGAT-CCCGGCTTGCGCATTATGCCT
* * * *
30823498 CTCCGATCGACTGAACGCCCACACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATCCC
64 CTCCGATCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCC
* * * * * *
30823563 CAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTCCGATAGCAG
129 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTCAGACAGCAG
* * * *
30823628 GAAAGGCAGCATGCAGGAGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTTCGACCGAC
194 GAAAGGCAGCACGCAGGAGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGAC
**
30823693 TATGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCC
259 TATGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCC
* * *
30823758 CCAATTGGATTGAGGGTTA
324 CCAATCGGATCGAGGATTA
* * * *
30823777 TGGCAGCGGGATCGACAGCACGTAGTGGGGGACCGAGCTGATCCTCGGCTTGTGCATTATGCCTC
1 TGGCAGCGAGATCGACAGCACGCAGCGGGGGACCGAGCTGATCC-CGGCTTGCGCATTATGCCTC
* **
30823842 TTCGATCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
65 TCCGATCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
* *
30823907 AGTCTAAGCAT-CTAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAG-CAGTA
130 AGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT-CAGACAGCA
** * ** * * *
30823970 GGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGG
193 GGAAAGGCAGCACGCAGGAGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGA
* *
30824035 CTGA-GCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
258 CT-ATGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAG
*
30824099 CCCCAGTCGGATCGAGGATTA
322 CCCCAATCGGATCGAGGATTA
* * * * *
30824120 TGGCAGCGAGACCTG-CAGCACGCAACGGGGGATCGAGCTAATCCCTGGCTTGCACATTATGCCT
1 TGGCAGCGAGATC-GACAGCACGCAGCGGGGGACCGAGCTGATCCC-GGCTTGCGCATTATGCCT
* * * *
30824184 CTCCGACCGACTGAGCGCCCACACACTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCC
64 CTCCGATCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCC
*
30824249 TAGTCTAAG
129 CAGTCTAAG
30824258 ATCAGATTGA
Statistics
Matches: 416, Mismatches: 58, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
342 4 0.01
343 407 0.98
344 5 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (342 bp):
TGGCAGCGAGATCGACAGCACGCAGCGGGGGACCGAGCTGATCCCGGCTTGCGCATTATGCCTCT
CCGATCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA
GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTCAGACAGCAGGA
AAGGCAGCACGCAGGAGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTA
TGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCC
AATCGGATCGAGGATTA
Found at i:30824299 original size:159 final size:156
Alignment explanation
Indices: 30823920--30824292 Score: 374
Period size: 159 Copynumber: 2.4 Consensus size: 156
30823910 CTAAGCATCT
* * * * *
30823920 AGAGTTCATTCCCAGTCTAAGATC-GAACCGGACTGAGGGTTGCAGCAGTAGGATCGGCAGCACG
1 AGAGTTCATT-CCAGTCTAAGATCAG-ATCGGATTGAGGGTTACGGCAGCAGGATC-GCAGCACG
* * * * * * **
30823984 CAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCAC
63 CACGGGGGACCGAGCCAATCCCTGGCTTGCACATTATGCCTCTCCGACCGACTGAGCGCCCACAC
* * *
30824049 GCCCGTTTCATGGGTTGGCTTAGGCATAG
128 ACCCGTTTCATGGGTTGACTTAGGCATAC
* ** * * * *
30824078 GGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGATTATGGCAGC-GAGACCTGCAGCAC
1 AGAGTTCATTCCA-GTCTAAG-ATCAGATCGGATTGAGGGTTACGGCAGCAG-GATC-GCAGCAC
* *
30824141 GCAACGGGGGATCGAGCTAATCCCTGGCTTGCACATTATGCCTCTCCGACCGACTGAGCGCCCAC
62 GC-ACGGGGGACCGAGCCAATCCCTGGCTTGCACATTATGCCTCTCCGACCGACTGAGCGCCCAC
* *
30824206 ACACTCGTTTCTTGGGTTGACTTAGGCATAC
126 ACACCCGTTTCATGGGTTGACTTAGGCATAC
* * *
30824237 AGAGTTCATTCCTAGTCTAAGATCAGATTGAATTGAGGGTTACGGCAACAGGATCG
1 AGAGTTCATTCC-AGTCTAAGATCAGATCGGATTGAGGGTTACGGCAGCAGGATCG
30824293 ATAGCACATA
Statistics
Matches: 169, Mismatches: 38, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 46 0.27
159 116 0.69
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (156 bp):
AGAGTTCATTCCAGTCTAAGATCAGATCGGATTGAGGGTTACGGCAGCAGGATCGCAGCACGCAC
GGGGGACCGAGCCAATCCCTGGCTTGCACATTATGCCTCTCCGACCGACTGAGCGCCCACACACC
CGTTTCATGGGTTGACTTAGGCATAC
Found at i:30824559 original size:156 final size:156
Alignment explanation
Indices: 30823969--30824729 Score: 513
Period size: 159 Copynumber: 4.8 Consensus size: 156
30823959 TTGCAGCAGT
* * * * *
30823969 AGGATCGGCAGCACGCAGGG-GGGACC-GAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGC
1 AGGATCGACAGCA-GCAGGGTGGGACCAG-GCTGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
* * * * *
30824032 CGGCTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
64 CGGCTCAGCGCC-GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-ATCTA
* * * * * *
30824097 AGCCCCAG-TCGGATCGAGGATTATGGCAGC
127 AG-ACCAGACCAGACCGAGGGTTATGGTAGC
* * * * * * * *
30824127 -GAGACCTG-CAGCACGCAACGG-GGGATC-GAGCTAATCCCTGGCTTGCACATTATGCCTCTCC
1 AG-GATC-GACAGCA-GC-AGGGTGGGACCAG-GCTGATCCCCGACTTGCGCATTCTGCCTCTCC
* * * * * * * * *
30824188 GACCGACTGAGCGCCCACACACTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGT
61 GACCGGCTCAGCG-CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-AAT
* ** ** * * *
30824253 CTAAGATCAGA-TTGAATTGAGGGTTACGGCAAC
124 CTAAGACCAGACCAG-ACCGAGGGTTATGGTAGC
* ** * * * *
30824286 AGGATCGATAGCA-CATAGAGAGGATCAGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATC
1 AGGATCGACAGCAGCAGGGTG-GGACCAGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACC
* * * * * * * *
30824350 GGTTCAACATCTGCACGCCCTTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GGCTCAGC-GCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-ATCTAA
* * * *
30824415 GCCCCAG-CCAGACCGAGGGTTGTTGTAGT
128 G-ACCAGACCAGACCGAGGGTTATGGTAGC
* * * * * *
30824444 GGGA-CTGGCAGC-GCAGAGG-GGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGC
1 AGGATC-GACAGCAGCAG-GGTGGGACCAGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
* * *
30824506 CGGCTCAGCGCCGCACGCTCATTTCATGGGTTGACTTATGTATACGGAGTTCATTCCCAATCTAA
64 CGGCTCAGCGCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAATCTAA
* **
30824571 GATCAGACTGGACCGAGGGTTATGGTAGC
128 GACCAGACCAGACCGAGGGTTATGGTAGC
* *
30824600 AGGATCGACAGCATGTAGGGTGGGACCAGGCTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACC
1 AGGATCGACAGCA-GCAGGGTGGGACCAGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACC
* * * * *
30824665 GACTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCCAATCTAA
65 GGCTCAGCG-CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAATCTAA
30824730 TATTTTGACG
Statistics
Matches: 470, Mismatches: 107, Indels: 51
0.75 0.17 0.08
Matches are distributed among these distances:
155 3 0.01
156 71 0.15
157 53 0.11
158 168 0.36
159 171 0.36
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (156 bp):
AGGATCGACAGCAGCAGGGTGGGACCAGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCG
GCTCAGCGCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAATCTAAGAC
CAGACCAGACCGAGGGTTATGGTAGC
Found at i:30825768 original size:159 final size:158
Alignment explanation
Indices: 30825481--30825942 Score: 407
Period size: 159 Copynumber: 2.9 Consensus size: 158
30825471 GATCGGACAG
** * * * * * *
30825481 AGGGTTG-GACCAGCAGGATCGGCAACACGCAGGGGGGACCAGATCGATCCCCGATTTGTGCATT
1 AGGGTTGCGA-CAGCAGGATCAACAGCACGCAGGGGAGATCAGGTCGATCCCCGACTTGCGCATT
* * * * * * ** * *
30825545 CTGCCAT-TCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
65 ATGCC-TCTCCGACAGACTCAGCGCTCGCACGATCATTTCGTGGGTTGGCTTAGGCATACGGAGT
**
30825609 TCATTCCATGTCTAAGCCCCAGCCGGACCA
129 TCATTCCATGTCTAAGCCCCAAACGGACCA
* * ** * * * *
30825639 AGGGTTGTGGCAGTGGGA-CTAACAGCACGCAGAGGGGGATCAGGTTGATCCCCGACTTTCGTAT
1 AGGGTTGCGACAGCAGGATC-AACAGCACGCAG-GGGAGATCAGGTCGATCCCCGACTTGCGCAT
* * * *
30825703 TATGCCTCTCCGATCAG-CTCAGTGGCT-GCAC-ACTCTTTTCGTGGGTTGACTTAGGCATACAG
64 TATGCCTCTCCGA-CAGACTCAG-CGCTCGCACGA-TCATTTCGTGGGTTGGCTTAGGCATACGG
** * * *
30825765 AGTTCATTCTCA-GTCTAAGATCGAAACGGATCG
126 AGTTCATTC-CATGTCTAAGCCCCAAACGGACCA
* ** * *
30825798 AGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGAGATCGGGTCGATCCTTGGCTTGCGCATTC
1 AGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGAGATCAGGTCGATCCCCGACTTGCGCATTA
* *
30825863 TGCCTCTCCGACCGACTGAGCGCTCGCACGATCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
66 TGCCTCTCCGACAGACTCAGCGCTCGCACGATCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
30825928 ATTCCATGTCTAAGC
131 ATTCCATGTCTAAGC
30825943 ATGCAGAGTT
Statistics
Matches: 239, Mismatches: 52, Indels: 26
0.75 0.16 0.08
Matches are distributed among these distances:
157 8 0.03
158 108 0.45
159 116 0.49
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGAGATCAGGTCGATCCCCGACTTGCGCATTA
TGCCTCTCCGACAGACTCAGCGCTCGCACGATCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAAACGGACCA
Found at i:30825920 original size:158 final size:155
Alignment explanation
Indices: 30825440--30825941 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 155
30825430 CTCAGTCTAA
* * **
30825440 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACAGAGGGTTGGACCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-AACGGAC-GAGGGTTGGA-CAGCAGGATCAAC
* * * * * * *
30825504 AACACGCAGGGGGGACCAGATCGATCCCCGATTTGTGCATTCTGCCAT-TCCGGCCGGCTGAGCG
62 AGCACGCAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCC-TCTCCGACCGACTGAGCG
* ** *
30825568 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 CTCGCACGATCATTTCGTGGGTTGGCTTAG
* ** ** * * **
30825598 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGTGGGA-CTAAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAAACGGA-CGAGGGTTG-GACAGCAGGATC-AAC
* * * * * *
30825662 AGCACGCAGAGGGGGATCAGGTTGATCCCCGACTTTCGTATTATGCCTCTCCGATC-AGCTCAGT
62 AGCACGCAG-GGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGA-CTGAG-
* * *
30825726 GGCT-GCAC-ACTCTTTTCGTGGGTTGACTTAG
124 CGCTCGCACGA-TCATTTCGTGGGTTGGCTTAG
*
30825757 GCATACAGAGTTCATTCTCA-GTCTAAGATCGAAACGGATCGAGGGTTGCGACAGCAGGATCAAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATC-AAACGGA-CGAGGGTTG-GACAGCAGGATCAAC
* * ** *
30825821 AGCACGCAGGGGAGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
62 AGCACGCAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
30825886 TCGCACGATCATTTCGTGGGTTGGCTTAG
127 TCGCACGATCATTTCGTGGGTTGGCTTAG
30825915 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30825942 CATGCAGAGT
Statistics
Matches: 270, Mismatches: 57, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
157 9 0.03
158 136 0.50
159 120 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACGGACGAGGGTTGGACAGCAGGATCAACAGCA
CGCAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCTCGC
ACGATCATTTCGTGGGTTGGCTTAG
Found at i:30826273 original size:26 final size:26
Alignment explanation
Indices: 30826243--30826295 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30826233 GTTGACTTAG
*
30826243 GCATA-CAGAGTTCATCCCCAGTCTAA
1 GCATACCA-AGTTAATCCCCAGTCTAA
*
30826269 GCATACCAAGTTAATTCCCAGTCTAA
1 GCATACCAAGTTAATCCCCAGTCTAA
30826295 G
1 G
30826296 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACCAAGTTAATCCCCAGTCTAA
Found at i:30826631 original size:159 final size:159
Alignment explanation
Indices: 30826333--30826769 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 159
30826323 CAGGATCGGT
* * * * * *
30826333 AGCACGTAGGGGGGATCGGGCCGATCCCCTGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGTGC
1 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * * * *
30826398 CCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAACCCCCAGTC
66 CCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAACCACCAGTC
* * *** *
30826462 GGACCAAGGGTTGTGGCAGTGGGACCGAC
131 AGACCAAGGGTTGCGGCAGCAAGACCAAC
* * * * * *
30826491 AGCACGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCG
1 AGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCG
* * *
30826556 CCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAA-GATCAGA
65 CCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAACCACCAG-
* * * *
30826619 TCAGATCGAGGGTTGCGGTAGCAAGATCAAC
129 TCAGACCAAGGGTTGCGGCAGCAAGACCAAC
* * * ** *
30826650 AGCACGCAGGGGGGACCGGGCCAATCCCCAACTTATGCATTCTGCCTCTCC-AGTTGGCTGAGCA
1 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGA-CCGGCTGAGCG
* * * *
30826714 CCCACACGCTCGTTTTG-AGGGTTGTCTTAGGCATACGGAGTTTATT-CCATGTCTAA
65 CCCGCACGCTCGTTTTGTA-GGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAA
30826770 GCATACGGGG
Statistics
Matches: 226, Mismatches: 47, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
157 5 0.02
158 97 0.43
159 121 0.54
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAACCACCAGTC
AGACCAAGGGTTGCGGCAGCAAGACCAAC
Found at i:30826737 original size:158 final size:157
Alignment explanation
Indices: 30826277--30826770 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 157
30826267 AAGCATACCA
* * * ** *
30826277 AGTTAATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCAG-ATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * *
30826341 GGGGGGATCGGGCCGATCCCCTGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGCACGC
65 GGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTC-CGCCGGCTGAGCGCCCGCACGC
* * * *
30826406 CCGTTTTGTGGGTTGGCTTAGGCATAGGG
129 TCGTTTTGAGGGTTGACTTAGGCATACGG
*** * * * ** *
30826435 AGTTCATT-CCATGTCTAACCCCCAG-TCGGACCAAGGGTTGTGGCAGTGGGACCGACAGCACGC
1 AGTTCATTCCCA-GTCTAA-GATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * *
30826498 AGAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCAC
64 AG-GGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCG-CCGGCTGAGCGCCCGCAC
*
30826563 GCTCGTTTCGTA-GGTTGACTTAGGCATACGG
127 GCTCGTTTTG-AGGGTTGACTTAGGCATACGG
* * * * *
30826594 AGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAAGATCAACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * ** * *
30826659 GGGGGACCGGGCCAATCCCCAACTTATGCATTCTGCCTCTCCAGTTGGCTGAGCACCCACACGCT
66 GGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCC-GCCGGCTGAGCGCCCGCACGCT
*
30826724 CGTTTTGAGGGTTGTCTTAGGCATACGG
130 CGTTTTGAGGGTTGACTTAGGCATACGG
*
30826752 AGTTTATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
30826771 CATACGGGGT
Statistics
Matches: 265, Mismatches: 60, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 133 0.50
159 121 0.46
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
GGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGCCGGCTGAGCGCCCGCACGCTC
GTTTTGAGGGTTGACTTAGGCATACGG
Found at i:30826774 original size:26 final size:26
Alignment explanation
Indices: 30826744--30826796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30826734 GTTGTCTTAG
*
30826744 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30826770 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30826796 G
1 G
30826797 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30826812 original size:184 final size:184
Alignment explanation
Indices: 30826586--30826955 Score: 479
Period size: 184 Copynumber: 2.0 Consensus size: 184
30826576 GTTGACTTAG
*
30826586 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAAGATCAACA
* ** * *
30826651 GCACGCAGGGGGGACCGGGCCAATCCCCAACTTATGCATTCTGCCTCTCCAGTTGGCTGAGCACC
66 GCACACAGGGGGGACCGGGCCAATCCCCAACTTACACATTCTGCCTCTCCAGTCGGCTAAGCACC
* * * * * *
30826716 CACACGCTCGTTTTGAGGGTTGTCTTAGGCATACGGAGTTTATTCCATGTCTAA
131 CACACGCTCATTTCGAGGGTAGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
* * * * * *
30826770 GCATACGGGGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAAGATCAACA
* * *** * * *
30826835 GCACACAGGGGGGATCGGGCCATTCCTTGACTTGCACATTCTGCCTCTGCGGTCGGCTAAGCACC
66 GCACACAGGGGGGACCGGGCCAATCCCCAACTTACACATTCTGCCTCTCCAGTCGGCTAAGCACC
** *
30826900 TGCACGCTCATTTCGTGGGTAGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
131 CACACGCTCATTTCGAGGGTAGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
30826954 GC
1 GC
30826956 CCCAGTCTGA
Statistics
Matches: 157, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
184 157 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAAGATCAACA
GCACACAGGGGGGACCGGGCCAATCCCCAACTTACACATTCTGCCTCTCCAGTCGGCTAAGCACC
CACACGCTCATTTCGAGGGTAGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
Found at i:30827495 original size:26 final size:26
Alignment explanation
Indices: 30827459--30827509 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30827449 TGACTTAGGC
30827459 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
30827485 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
30827510 ATCATACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:30827730 original size:345 final size:343
Alignment explanation
Indices: 30827086--30827826 Score: 1036
Period size: 345 Copynumber: 2.2 Consensus size: 343
30827076 TGAGCACCAG
* *
30827086 CATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
1 CATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
* * *
30827151 ATTCCCAGTCCAAGATCAGACTAGACCGAGGGCTGCGACAGTAGGATCGACAGCACGCAGGGGGG
66 ATTCCCAGTCCAAGATCAGACTAGACCGAAGGCTGCGACAGCAAGATCGACAGCACGCAGGGGGG
* * *
30827216 ACCGGGTCGATCCCTGGCCTATGCATTCTGCCTCTCCGACTGGCTGAGCACCCGTATGCCCGTTT
131 ACCAGGTCGATCCCCGGCCTATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTATGCCCGTTT
*
30827281 CATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTG
196 CATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTG
* * * *
30827346 GCAACGGGATCGATAGCACGCAGCGGGGGATCGAGCTGATCCCCCGGCTTACGCATTATGCCTCT
261 GCAACGGGATCGACAGCACGCAGAGGGGGACCAAGCTGAT-CCCCGGCTTACGCATTATGCCTCT
* *
30827411 TC-AGTCGGCTGAGCGCCCA
325 TCGA-CCGGCTCAGCGCCCA
* *
30827430 CATGCTCATTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTT
1 CATGCTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTT
* * * * * ** * * *
30827495 CATTCCCAGTCTAAGATCATACTGGACCGAAGGTTGTGGTAGCAAGATTGGCAGCACGTAGGGGG
65 CATTCCCAGTCCAAGATCAGACTAGACCGAAGGCTGCGACAGCAAGATCGACAGCACGCAGGGGG
* * * * * *
30827560 GACTAGGTCGATCCCCGGCTTGTGCATTCTGCCTTTCCGACCGGCTGAGCGCCCAG-ATGCCTGT
130 GACCAGGTCGATCCCCGGCCTATGCATTCTGCCTCTCCGACCGGCTGAGCACCC-GTATGCCCGT
* *
30827624 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTG
194 TTCATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
** *
30827689 TGGCAGTGGGATCGACAGCACGCAGAGGGGGACCAAGCTGATCCCCGGCTTGCGCATTATGCCTC
259 TGGCAACGGGATCGACAGCACGCAGAGGGGGACCAAGCTGATCCCCGGCTTACGCATTATGCCTC
*
30827754 TTCGACCGGCTCAGCGCCCG
324 TTCGACCGGCTCAGCGCCCA
* * * * *
30827774 CACGCTCATTTCATGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 CATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
30827827 ATTGGACTGG
Statistics
Matches: 350, Mismatches: 44, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
343 41 0.12
344 51 0.15
345 257 0.73
346 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
CATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
ATTCCCAGTCCAAGATCAGACTAGACCGAAGGCTGCGACAGCAAGATCGACAGCACGCAGGGGGG
ACCAGGTCGATCCCCGGCCTATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTATGCCCGTTT
CATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTG
GCAACGGGATCGACAGCACGCAGAGGGGGACCAAGCTGATCCCCGGCTTACGCATTATGCCTCTT
CGACCGGCTCAGCGCCCA
Found at i:30827786 original size:159 final size:158
Alignment explanation
Indices: 30827549--30827986 Score: 456
Period size: 159 Copynumber: 2.8 Consensus size: 158
30827539 AGATTGGCAG
* * * *
30827549 CACGTAGGGGGGACTAGGTCGATCCCCGGCTTGTGCATTCTGCCT-TTCCGACCGGCTGAGCGCC
1 CACGCAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTT-CGACCGGCTGAGCGCC
* * * *
30827613 CAGATGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-
65 C-GACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACT
* ** * * *
30827676 GGACCGAGGGTTGTGGCAGTGGGATCGACAG
128 GGACCAAGGGTTACGACAGTAGGATCGACAA
* *
30827707 CACGCAGAGGGGGACCAAG-CTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGC
1 CACGCAG-GGGGGACCAAGTC-GATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* ** * ***
30827771 CCGCACGCTCATTTCATGGGTTAACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGAC
64 CCG-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGAC
*
30827834 TGGACCAAGGGTTACGATAGTAGGATCGACAA
127 TGGACCAAGGGTTACGACAGTAGGATCGACAA
** * * * * * * * *
30827866 CACGTTGGGGGGACCAAGTCGATCCTCGACTTGCCCATTCTGGCTCTCCGAGCGACTGAACGCCC
1 CACGCAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
30827931 GTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 G-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
30827987 TACGTAGTTC
Statistics
Matches: 229, Mismatches: 41, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.01
158 101 0.44
159 119 0.52
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CACGCAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
GACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGA
CCAAGGGTTACGACAGTAGGATCGACAA
Found at i:30827962 original size:158 final size:157
Alignment explanation
Indices: 30827485--30827984 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 157
30827475 CAGTCTAAGT
* * * * *
30827485 ATACGGAGTTCATTCCCA-GTCTAAGATCATACTGGACCGAA-GGTTGTGGTAGCAAGATTGGCA
1 ATACGGAGTTCATT-CCATGTCTAAGATCACACTGGACC-AAGGGTTGTGGTAGTAGGATCGACA
* * * *
30827548 GCACGTAGGGGGGACTAGGTCGATCCCCGGCTTGTGCATTCTGCCTTTCCGACCGGCTGAGCGCC
64 GCACGTAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
30827613 CAGATGC-CTGTTTCATGGGTTGGCTTAGGC
129 C-GACGCTC-GTTTCATGGGTTGGCTTAGGC
* * * * * * *
30827643 ATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGTGGGATCGACAG
1 ATACGGAGTTCATTCCATGTCTAAGATCACACT-GGACCAAGGGTTGTGGTAGTAGGATCGACAG
* * * *
30827707 CACGCAGAGGGGGACCAAG-CTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGC
65 CACGTAG-GGGGGACCAAGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* ** *
30827771 CCGCACGCTCATTTCATGGGTTAACTTATGC
128 CCG-ACGCTCGTTTCATGGGTTGGCTTAGGC
*** ** * *
30827802 ATACGGAGTTCATTCCCA-GTCTAAGATTGGACTGGACCAAGGGTTACGATAGTAGGATCGACAA
1 ATACGGAGTTCATT-CCATGTCTAAGATCACACTGGACCAAGGGTTGTGGTAGTAGGATCGACAG
* * * * * * * *
30827866 CACGTTGGGGGGACCAAGTCGATCCTCGACTTGCCCATTCTGGCTCTCCGAGCGACTGAACGCCC
65 CACGTAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
30827931 GTACGCTCGTTTCATGGGTTGGCTTAGGC
130 G-ACGCTCGTTTCATGGGTTGGCTTAGGC
30827960 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
30827985 CATACGTAGT
Statistics
Matches: 276, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 10 0.04
158 141 0.51
159 119 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
ATACGGAGTTCATTCCATGTCTAAGATCACACTGGACCAAGGGTTGTGGTAGTAGGATCGACAGC
ACGTAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
ACGCTCGTTTCATGGGTTGGCTTAGGC
Found at i:30828028 original size:343 final size:338
Alignment explanation
Indices: 30827675--30829368 Score: 1375
Period size: 343 Copynumber: 4.9 Consensus size: 338
30827665 AAGCCCCAGT
** *
30827675 CGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCAAGCTGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCAAGCCGATCCCCGGCTT
* * * * ** *
30827740 GCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTAACTTATGCATA
65 GCGCATTCTGCCTC-TCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
** * * * ** * * *
30827805 CGGAGTTCATTCCCA-GTCTAAGATTGGACTGGACCAAGGGTTACGATAGTAGGATCGACAACAC
129 -GGAGTTCATT-CCATGTCTAAGCCTAGACCGGACCGAGGGTTGTGGTAGTAGGACCGGCAACAC
* * * * * * * **
30827869 GTTGGGGGGACCAAGTC-GATCCTCGACTTGCCCATTCTGGCTCTCCGAGCGACTGAACGCCCGT
192 -TAGGGGGGACC-AG-CAGATCCTCGGCTTGCACATTATGCCTCTCCGAGCGACTGAGCACCCAC
* * * *
30827933 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGTAGTTC
254 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTC
* *
30827997 ATTCCCAGTCTATGATCGGTC
318 ATTCCCAGTCTAAGATCGGAC
* * * * **
30828018 TGGTCCGAGGGTTGCAGTAGCAGGACAGGCAGCAGGATCTACAGCAAGCAGGGGGGACCGGGCCG
1 CGGACCGAGGGTT---GT---------GGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCG
* * * * * *
30828083 ATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTG
54 ATCCCCGGCTTGCGCATTCTGCCTCTC-GACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTG
* * * *
30828148 GCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCAGG
118 GCTTAGGCATA-GGAGTTCATTCCATGTCTAAG-CCTAGACCGGACCGAGGGTTGTGGTAGTAGG
* * * * * *
30828212 ACCGGCAGCACACAACGGGGGACTGAGCTA-ATCCCCGGCTTACGCATTATGCCTCTCCG-GTC-
181 ACCGGCA--ACACTAGGGGGGAC-CAGC-AGATCCTCGGCTTGCACATTATGCCTCTCCGAG-CG
* *
30828274 AGCTGAGCACCCACAAGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCCAGTCTA
241 A-CTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCCAGTCTA
* *
30828339 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC
304 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* ** * * * * *
30828374 CGGACCGAGGGTTGCGATAGCAAGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCTGGCTTA
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTG
* ** * *
30828439 CGTATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGCCTTAGGCATAA
66 CGCATTCTGCCTCT-CGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT-A
* * * * *
30828504 GGTGTTCATTCCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGTAGTGGGACCGGTAGCACA
129 GGAGTTCATTCCATGTCTAAG-CCTAGACCGGACCGAGGGTTGTGGTAGTAGGACCGGCAACAC-
* * * *
30828568 TAGCGAGGGATCGGACAGATCCTCGGCTTGCACATTATGCCTCTCCGATCGACTGAGCACCCACA
192 TAG-GGGGGACCAG-CAGATCCTCGGCTTGCACATTATGCCTCTCCGAGCGACTGAGCACCCACA
*
30828633 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCCGGAGTTCAT
255 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
*
30828698 TCCCAGTCTAAGATCGAAC
320 TCCCAGTCTAAGATCGGAC
* * * * * *
30828717 CGGACTGAGGGTTGTAGCAGCAGGATCGACAGCACGCAGGGGGAACCAAGCTGATCCTCGACTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTG
* * * * *
30828782 TGCATTCTGCCTCTCCAGCCGACTGAGTGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAG
66 CGCATTCTGCCTCTCGA-CCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
* * * ** * *
30828847 GAAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACG
130 G-AGTTCATTCCATGTCTAAG-CCTAGACCGGACCGAGGGTTGTGGTAGTAGGACCGGCAACAC-
* * * * * * **
30828911 CAGCGGGGGATCGAGCTA-ATCCAT-GGCTTGCGCATTATGCCTTTTCGACCGGTTGAGCACCCA
192 TAG-GGGGGA-CCAGC-AGATCC-TCGGCTTGCACATTATGCCTCTCCGAGCGACTGAGCACCCA
* * * *
30828974 CACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAAACGGAGTTC
253 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* *
30829039 ATTCCCAGTCTAAGATTGGAT
318 ATTCCCAGTCTAAGATCGGAC
** ** * * * * * * * * * * *
30829060 CGGACTAAGGGTTACGACAACAAGATCGGCAGCACG-TGGGGGGATCGACCCGTTCCCTGGCTTA
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTG
* * * * * * **
30829124 CGTATTCTGCCTTTCCGACCGTCTCAGCACCCTCACGCCGGTTTCGTGGGTTGGCTTAGGCATAG
66 CGCATTCTGCCTCT-CGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA-
* * * * * *
30829189 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGTGGGATCGGCAGCACG
129 GGAGTTCATTCCATGTCTAAG-CCTAGACCGGACCGAGGGTTGTGGTAGTAGGACCGGCAACAC-
* * * * * * * **
30829253 CAGAGGGGGACCAGGCCGATCC-CTGACTTGCGCATTATGCCTCTTCG-GCCGGCTCAGTGCCCA
192 TAG-GGGGGACCA-GCAGATCCTC-GGCTTGCACATTATGCCTCTCCGAG-CGACTGAGCACCCA
* * * * *
30829316 CACGCTCATTTCATGGGTTGACTTACGCATATGGAGTTCATTCCCAGTCTAAG
253 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
30829369 ATCAGACCAG
Statistics
Matches: 1096, Mismatches: 210, Indels: 91
0.78 0.15 0.07
Matches are distributed among these distances:
341 2 0.00
342 222 0.20
343 367 0.33
344 227 0.21
345 3 0.00
346 2 0.00
353 6 0.01
354 117 0.11
355 97 0.09
356 50 0.05
357 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (338 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTG
CGCATTCTGCCTCTCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
AGTTCATTCCATGTCTAAGCCTAGACCGGACCGAGGGTTGTGGTAGTAGGACCGGCAACACTAGG
GGGGACCAGCAGATCCTCGGCTTGCACATTATGCCTCTCCGAGCGACTGAGCACCCACACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGAC
Found at i:30828366 original size:26 final size:27
Alignment explanation
Indices: 30828313--30828366 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
30828303 GTTGACTTAG
30828313 GCATACGGAGTTCATCCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCCAGTCTAA
* *
30828340 GCATATGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCCCCCAGTCTAA
30828366 G
1 G
30828367 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATCCCCCAGTCTAA
Found at i:30828490 original size:185 final size:186
Alignment explanation
Indices: 30828160--30828512 Score: 426
Period size: 185 Copynumber: 1.9 Consensus size: 186
30828150 TTAGGCAAAG
* * * * *
30828160 GGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCACAC
1 GGAGTTCATTCCAAGTCTAAGCACCAACCGGACCGAGGGTTGCGATAGCAAGACCGACAGCACAC
* * *
30828225 AACGGGGGACTGAGCTAATCCCCGGCTTACGCATTATGCCTCTCCGGTCAGCTGAGCACCCACAA
66 AACGGGGGACAGAGCCAATCCCCGGCTTACGCATTATGCCTCTCCGATCAGCTGAGCACCCACAA
* * *
30828290 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCCAGTCTAAGCATAT
131 GCCCATTTTGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCCAGTCTAAGCATAT
* * * *
30828346 GGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGATAGCAAGATCGACAGCACG
1 GGAGTTCATTCCAAGTCTAAGCACCA-ACCGGACCGAGGGTTGCGATAGCAAGACCGACAGCACA
* * * * * * *
30828410 C-AGGGGGGATCAG-GCCGATCCCTGGCTTACGTATTCTGCCTCTCCGAT-AGGCTGAGCGCCCG
65 CAACGGGGGA-CAGAGCCAATCCCCGGCTTACGCATTATGCCTCTCCGATCA-GCTGAGCACCCA
* * *
30828472 CACGCCCATTTTGTGGGTTGCCTTAGGCATAAGGTGTTCAT
128 CAAGCCCATTTTGTGGGTTGACTTAGGCATAAGGAGTTCAT
30828513 TCCATGTCTA
Statistics
Matches: 139, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
184 1 0.01
185 83 0.60
186 55 0.40
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (186 bp):
GGAGTTCATTCCAAGTCTAAGCACCAACCGGACCGAGGGTTGCGATAGCAAGACCGACAGCACAC
AACGGGGGACAGAGCCAATCCCCGGCTTACGCATTATGCCTCTCCGATCAGCTGAGCACCCACAA
GCCCATTTTGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCCAGTCTAAGCATAT
Found at i:30828543 original size:857 final size:846
Alignment explanation
Indices: 30827089--30828683 Score: 2106
Period size: 857 Copynumber: 1.9 Consensus size: 846
30827079 GCACCAGCAT
* *
30827089 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
* *
30827154 CCCAGTCCAAGATCAGACTAGACCGAGGGCTGCGACAGTAGGATCGACAGCACGCAGGGGGGACC
66 CCCAGTCCAAGATCAGACTAGACCGAGGGCTGCGACAGCAGGATCGACAGCAAGCAGGGGGGACC
* * * *
30827219 GGGTCGATCCCTGGCCTATGCATTCTGCCTCTCCGACTGGCTGAGCACCCGTATGCCCGTTTCAT
131 GGGCCGATCCCCGGCCTATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCCCGTTTCAT
* * * *
30827284 GGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCA
196 GGGTAGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCA
* * * * * * *
30827349 ACGGGATCGATAGCACGCAGCGGGGGATCGAGCTGATCCCCCGGCTTACGCATTATGCCTCTTCA
261 ACAGGACCGACAGCACACAACGGGGGATCGAGCTAATCCCCCGGCTTACGCATTATGCCTCTCCA
* * *
30827414 GTCGGCTGAGCGCCCACATGCTCATTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
326 GTCAGCTGAGCACCCACAAGCTCATTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * * * *
30827479 CTAAGTATACGGAGTTCATTCCCAGTCTAAGATCATACTGGACCGAAGGTTGTGGTAGCAAGATT
391 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGATAGCAAGATC
* * * ** * *
30827544 GGCAGCACGTAGGGGGGACTAGGTCGATCCCCGGCTTGTGCATTCTGCCTTTCCGACCGGCTGAG
456 GACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAG
* ** * *
30827609 CGCCCAGATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
521 CGCCCAGACGCCCATTTCATGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * *
30827674 TCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCA-AGCTGATCCCCGGC
586 CCAGACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGAGGGACCAGA-CAGATCCCCGGC
* * * * * *
30827738 TTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTAACTTATGCA
650 TTGCACATTATGCCTCTCCGACCGACTCAGCACCCACACGCTCATTTCATGGGTTAACTTAGGCA
*
30827803 TACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTACGATAGTAGGATCGACAACA
715 TACGGAGTTCATCCCCAGTCTAAGATTGGACTGGACCAAGGGTTACGATAGTAGGATCGACAACA
30827868 CGTTGGGGGGACCAAGTCGATCCTCGACTTGCCCATTCTGGCTCTCCGAGCGACTGAACGCCCGT
780 CGTTGGGGGGACCAAGTCGATCCTCGACTTGCCCATTCTGGCTCTCCGAGCGACTGAACGCCCGT
30827933 AC
845 AC
* * *
30827935 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGTAGTTCAT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCAT
* * * * * * *
30827999 TCCCAGTCTATGATCGGTCTGGTCCGAGGGTTGCAGTAGCAGGACAGGCAGCAGGATCTACAGCA
65 TCCCAGTCCAAGATCAGACTAGACCGA-GG--GC--T-GC--G--A--CAGCAGGATCGACAGCA
* * * *
30828064 AGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGT
118 AGCAGGGGGGACCGGGCCGATCCCCGGCCTATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGT
* * *
30828129 ACGCTCGTTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACC
183 ACGCCCGTTTCATGGGTAGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACC
* * *
30828194 GAGGGTTGTGGTAGCAGGACCGGCAGCACACAACGGGGGA-CTGAGCTAAT-CCCCGGCTTACGC
248 GAGGGTTGTGGCAACAGGACCGACAGCACACAACGGGGGATC-GAGCTAATCCCCCGGCTTACGC
* *
30828257 ATTATGCCTCTCCGGTCAGCTGAGCACCCACAAGCTCGTTTT-GTGGGTTGACTTAGGCATACGG
312 ATTATGCCTCTCCAGTCAGCTGAGCACCCACAAGCTCATTTTCGTGGGTTGACTTAGGCATACGG
* *
30828321 AGTTCATCCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
377 AGTTCAT-CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGT
* *
30828386 TGCGATAGCAAGATCGACAGCACGCAGGGGGGA-TCAGGCCGATCCCTGGCTTACGTATTCTGCC
441 TGCGATAGCAAGATCGACAGCACGCAGGGGGGACT-AGGCCGATCCCCGGCTTACGCATTCTGCC
* ** *
30828450 TCTCCGATAGGCTGAGCGCCC-GCACGCCCATTTTGTGGGTTGCCTTAGGCATAAGGTGTTCATT
505 TCTCCGACAGGCTGAGCGCCCAG-ACGCCCATTTCATGGGTTGCCTTAGGCATAAGGAGTTCATT
* * ** * * *
30828514 CCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGTAGTGGGACCGGTAGCACATAGCGAGGGAT
569 CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGAGGGAC
* * * * * *
30828579 CGGACAGATCCTCGGCTTGCACATTATGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCG
634 CAGACAGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCACCCACACGCTCATTTCA
*
30828644 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
699 TGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
30828684 CATCCGGAGT
Statistics
Matches: 634, Mismatches: 97, Indels: 25
0.84 0.13 0.03
Matches are distributed among these distances:
845 3 0.00
846 76 0.12
847 2 0.00
849 2 0.00
851 1 0.00
852 2 0.00
854 1 0.00
856 32 0.05
857 346 0.55
858 169 0.27
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (846 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
CCCAGTCCAAGATCAGACTAGACCGAGGGCTGCGACAGCAGGATCGACAGCAAGCAGGGGGGACC
GGGCCGATCCCCGGCCTATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCCCGTTTCAT
GGGTAGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCA
ACAGGACCGACAGCACACAACGGGGGATCGAGCTAATCCCCCGGCTTACGCATTATGCCTCTCCA
GTCAGCTGAGCACCCACAAGCTCATTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGATAGCAAGATC
GACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACAGGCTGAG
CGCCCAGACGCCCATTTCATGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG
CCAGACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGAGGGACCAGACAGATCCCCGGCT
TGCACATTATGCCTCTCCGACCGACTCAGCACCCACACGCTCATTTCATGGGTTAACTTAGGCAT
ACGGAGTTCATCCCCAGTCTAAGATTGGACTGGACCAAGGGTTACGATAGTAGGATCGACAACAC
GTTGGGGGGACCAAGTCGATCCTCGACTTGCCCATTCTGGCTCTCCGAGCGACTGAACGCCCGTA
C
Found at i:30828693 original size:26 final size:26
Alignment explanation
Indices: 30828657--30828709 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30828647 GTTGACTTAG
30828657 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30828683 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30828709 G
1 G
30828710 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30828972 original size:687 final size:687
Alignment explanation
Indices: 30827886--30829368 Score: 1785
Period size: 687 Copynumber: 2.1 Consensus size: 687
30827876 GGACCAAGTC
* * * * * **
30827886 GATCCTCGACTTGCCCATTCTGGCTCTCCGAGCGACTGAACGCCCGTACGCTCGTTTCATGGGTT
1 GATCCTCGACTTGCACATTATGCCTCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTT
* * * * *
30827951 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGTAGTTCATTCCCAGTCTATGATCGG
66 GACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * * * * **
30828016 TCTGGTCCGAGGGTTGCAGTAGCAGGACAGGCAGCAGGATCTACAGCAAGCAGGGGGGACCGGGC
130 ACCGGACCGAGGGTT--AGT------A-AGGCAGCAGGATCGACAGCAAGCAGGGGGAACCAAGC
* ** * * *
30828081 CGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGT
186 CGATCCCCGACTTGTGCATTCTGCCTCTCCAGCCGACTGAGCACCCGTACGCCCATTTCGTGGGT
* *
30828146 TGGCTTAGGCAAAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAG
251 TGGCTTAGGCAAAGGAAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAG
* **
30828211 GACCGGCAGCACACAACGGGGGACTGAGCTAATCCCCGGCTTACGCATTATGCCTCTCCGGTCAG
316 GACCGGCAGCACACAACGGGGGACTGAGCTAATCCACGGCTTACGCATTATGCCTCTCCGACCAG
* * *
30828276 CTGAGCACCCACA-AGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCCAGTCTAA
381 CTGAGCACCCACACA-CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCCAATCTAA
* * * * * *
30828340 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAAGATCGACA
444 GCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAACAAGATCGACA
* * * *
30828405 GCACGCAGGGGGGATC-AGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCGATAGGCTGAGCGC
509 GCACG-AGGGGGGATCGA-CCCGATCCCTGGCTTACGTATTCTGCCTCTCCGACAGGCTCAGCAC
* * *
30828469 CCGCACGCCCATTTTGTGGGTTGCCTTAGGCATAAGGTGTTCATTCCATGTCTAAGCCCTAGCCA
572 CCGCACGCCCATTTCGTGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
30828534 GACCGAGGGTTGTGGTAGTGGGACCGGTAGCACATAGCGAGGGATC-GGACA
637 GACCGAGGGTTGTGGCAGTGGGACCGGCAGCACACAGAGAGGGACCAGG-CA
* * * *
30828585 GATCCTCGGCTTGCACATTATGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTT
1 GATCCTCGACTTGCACATTATGCCTCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTT
*
30828650 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCCGGAGTTCATTCCCAGTCTAAGATCGA
66 GACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * * *
30828715 ACCGGACTGAGGGTT-GT-A-GCAGCAGGATCGACAGCACGCAGGGGGAACCAAGCTGATCCTCG
130 ACCGGACCGAGGGTTAGTAAGGCAGCAGGATCGACAGCAAGCAGGGGGAACCAAGCCGATCCCCG
**
30828777 ACTTGTGCATTCTGCCTCTCCAGCCGACTGAGTGCCCGTACGCCCATTTCGTGGGTTGGCTTAGG
195 ACTTGTGCATTCTGCCTCTCCAGCCGACTGAGCACCCGTACGCCCATTTCGTGGGTTGGCTTAGG
* * ** * *
30828842 CATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGTAG
260 CAAAGGAAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGGCAG
* * * * * * * *
30828907 CACGCAGCGGGGGA-TCGAGCTAATCCATGGCTTGCGCATTATGCCTTTTCGACCGGTTGAGCAC
325 CACACAACGGGGGACT-GAGCTAATCCACGGCTTACGCATTATGCCTCTCCGACCAGCTGAGCAC
30828971 CCACACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAAACGGAG
389 CCACACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAAACGGAG
** * * * *
30829036 TTCATTCCCAGTCTAAGATTGGATCGGACTAAGGGTTACGACAACAAGATCGGCAGCACGTGGGG
454 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAACAAGATCGACAGCACGAGGGG
* * * * * **
30829101 GGATCGACCCGTTCCCTGGCTTACGTATTCTGCCTTTCCGACCGTCTCAGCACCCTCACGCCGGT
519 GGATCGACCCGATCCCTGGCTTACGTATTCTGCCTCTCCGACAGGCTCAGCACCCGCACGCCCAT
* * * *
30829166 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTG
584 TTCGTGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
* * * *
30829231 TGGCAGTGGGATCGGCAGCACGCAGAGGGGGACCAGGCC
649 TGGCAGTGGGACCGGCAGCACACAGAGAGGGACCAGGCA
* * * * * * *
30829270 GATCC-CTGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCACACGCTCATTTCATGGGT
1 GATCCTC-GACTTGCACATTATGCCTCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGT
* *
30829334 TGACTTACGCATATGGAGTTCATTCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
30829369 ATCAGACCAG
Statistics
Matches: 668, Mismatches: 109, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
684 1 0.00
685 223 0.33
686 74 0.11
687 242 0.36
688 2 0.00
696 2 0.00
699 121 0.18
700 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (687 bp):
GATCCTCGACTTGCACATTATGCCTCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
CCGGACCGAGGGTTAGTAAGGCAGCAGGATCGACAGCAAGCAGGGGGAACCAAGCCGATCCCCGA
CTTGTGCATTCTGCCTCTCCAGCCGACTGAGCACCCGTACGCCCATTTCGTGGGTTGGCTTAGGC
AAAGGAAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
ACACAACGGGGGACTGAGCTAATCCACGGCTTACGCATTATGCCTCTCCGACCAGCTGAGCACCC
ACACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAAACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAACAAGATCGACAGCACGAGGGGGG
ATCGACCCGATCCCTGGCTTACGTATTCTGCCTCTCCGACAGGCTCAGCACCCGCACGCCCATTT
CGTGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
GCAGTGGGACCGGCAGCACACAGAGAGGGACCAGGCA
Found at i:30829346 original size:159 final size:159
Alignment explanation
Indices: 30829131--30829528 Score: 464
Period size: 158 Copynumber: 2.5 Consensus size: 159
30829121 TTACGTATTC
* * * * * *
30829131 TGCCT-TTCCGACCGTCTCAGCACCCTCACGC-CGGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
1 TGCCTCTTCC-ACCGGCTCAGCGCCCACACGCTC-ATTTCATGGGTTGGCTTAGGCATATGGAGT
* * * ** * *
30829194 TCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAG
64 TCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTACGGCAGTAGGATCGACAGCACGCAG-G
*
30829258 GGGGACCAGGCCGATCCCTGACTTGCGCATTA
128 GGGGACCAGGCCGATCCCCGACTTGCGCATTA
** * * *
30829290 TGCCTCTTCGGCCGGCTCAGTGCCCACACGCTCATTTCATGGGTTGACTTACGCATATGGAGTTC
1 TGCCTCTTCCACCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTC
* * *
30829355 ATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGACAGCACGTAGGGG
66 ATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGG
* * *
30829418 GGACCGGGCCGATCCCCGGCTTGCGCATTC
130 GGACCAGGCCGATCCCCGACTTGCGCATTA
* * * *
30829448 TGCCTCTTCCACTGGCTGAGCGCCCTCACGCTCATTTCATGGGTTGGCTTAGGTATATGGAGTTC
1 TGCCTCTTCCACCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTC
30829513 ATTCCATGTCTAAGCA
66 ATTCCATGTCTAAGCA
30829529 TACGGGGTTC
Statistics
Matches: 199, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 98 0.49
159 91 0.46
160 7 0.04
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
TGCCTCTTCCACCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTC
ATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGG
GACCAGGCCGATCCCCGACTTGCGCATTA
Found at i:30829488 original size:158 final size:158
Alignment explanation
Indices: 30829032--30829526 Score: 507
Period size: 159 Copynumber: 3.1 Consensus size: 158
30829022 CTAAGCAAAC
** * ** * ** *
30829032 GGAGTTCATTCCCA-GTCTAAGATTGGATCGGACTAAGGGTTACGACAACAAGATCGGCAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCAGCACG
* ** * * * * *
30829096 T-GGGGGGATCGACCCGTTCCCTGGCTTACGTATTCTGCCT-TTCCGACCGTCTCAGCACCCTCA
65 TAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCC-ACCGGCTCAGCGCCCTCA
* * *
30829159 CGC-CGGTTTCGTGGGTTGGCTTAGGCATAG
129 CGCTC-ATTTCATGGGTTGGCTTAGGCATAT
** * ** *
30829189 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGTGGGATCGGCAGCACG
1 GGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCAGCACG
* * * * ** * *
30829253 CAGAGGGGGACCAGGCCGATCCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCACA
65 TAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCCACCGGCTCAGCGCCCTCA
* *
30829318 CGCTCATTTCATGGGTTGACTTACGCATAT
129 CGCTCATTTCATGGGTTGGCTTAGGCATAT
* * *
30829348 GGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCAGCACG
* * *
30829412 TAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCCACTGGCTGAGCGCCCTCAC
65 TAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCCACCGGCTCAGCGCCCTCAC
*
30829477 GCTCATTTCATGGGTTGGCTTAGGTATAT
130 GCTCATTTCATGGGTTGGCTTAGGCATAT
30829506 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
30829527 CATACGGGGT
Statistics
Matches: 270, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 46 0.17
158 100 0.37
159 114 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGTAGGATCGGCAGCACGT
AGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCCACCGGCTCAGCGCCCTCACG
CTCATTTCATGGGTTGGCTTAGGCATAT
Found at i:30830760 original size:158 final size:161
Alignment explanation
Indices: 30830299--30830760 Score: 467
Period size: 158 Copynumber: 2.9 Consensus size: 161
30830289 CGGACTGGAT
* * * * * * * * *
30830299 CGAGGGTTACGGTAGTAGGATCGGCAACACACAG-GGCAGACCAGACCGATCCCCAGA-TTACGC
1 CGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGAGACCGGGCCGATCCCC-GACTTTCGC
* * * * * * * *
30830362 ATTTTGCCACTTCGACCGGCTGAACGCCCGCTCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
65 ATTATACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
*
30830427 GTTCATTCCATGTCT-A-ATCCCCAATCGGAC
130 GTTCATTCCATGTCTAAGATCCACAATCGGAC
** * *
30830457 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTTCGCA
1 CGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGACTTTCGCA
* * * * * * * * *
30830522 TTATGCCTTTCTGGCCGGCTCAGTG-CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
66 TTATACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* *
30830586 TTCATT-CTTCGTCTAAGAT-CAGAA-CGGAC
131 TTCATTCCAT-GTCTAAGATCCACAATCGGAC
* * * * * *
30830615 CGAGGGTTACGGTAGCAGGATCGACAGCATGTAG-GGGAGATCGGGTCGATCCCCGGCTTGT-GC
1 CGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGACTT-TCGC
*
30830678 ATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
65 ATTATACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
30830743 GTTCATTCCATGTCTAAG
130 GTTCATTCCATGTCTAAG
30830761 CATACGGAGT
Statistics
Matches: 244, Mismatches: 52, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 43 0.18
158 156 0.64
159 43 0.18
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (161 bp):
CGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGACTTTCGCA
TTATACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGATCCACAATCGGAC
Found at i:30830770 original size:26 final size:26
Alignment explanation
Indices: 30830734--30830800 Score: 127
Period size: 25 Copynumber: 2.6 Consensus size: 26
30830724 GTTGGCTTAG
30830734 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30830760 GCATACGGAGTTCA-TCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30830785 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
30830801 GTCAGTCTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 25 0.62
26 15 0.38
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30833602 original size:158 final size:157
Alignment explanation
Indices: 30833210--30833616 Score: 365
Period size: 158 Copynumber: 2.6 Consensus size: 157
30833200 NNNNNNNNNN
* * * *
30833210 GCTTGTGCATTCTACCTC-TCTAGCTGACTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAG
1 GCTTGTGCATTCTACCTCTTC-GGCTG-CTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAG
** * * *
30833274 GCATACGAAGTTCATTCCATGTCTAACCCTAGCCGGATCGAGGGATGTGGCAGTGAGACCGACAG
64 GCATACGAAGTTCATTCCATGTCTAAGACTAGCCGGACCGAGGGATGCGGCAGAGAGACCGACAG
**
30833339 CACGCAGAGGGGGATCGAACCGATCCCTG
129 CACGCAGAGGGGGATCGAACCGATCCCCA
*** * * * * * * * * ** * *
30833368 GCTTGCATATTATGCCTCTCCGATCGGTTCAGCACCCGAACGCTCATTTCATGGGTTAACTTTGA
1 GCTTGTGCATTCTACCTCTTCG-GCTGCTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAGG
* * * * * * * *
30833433 CAAACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAG-GATCGAC
65 CATACGAAGTTCATT-CCATGTCTAAGACTAG-CCGGACCGAGGGATGCGGCAG-AGAGACCGAC
* *
30833496 AGCACGCAGA-GGGGATTGAGCC-AGTCCCCA
127 AGCACGCAGAGGGGGATCGAACCGA-TCCCCA
* *
30833526 GCTTGTGCATTCTACCTCTTCGGCCTGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
1 GCTTGTGCATTCTACCTCTTCGG-CTGCTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAGG
30833591 CATACGAAGTTCATTCCATGTCTAAG
65 CATACGAAGTTCATTCCATGTCTAAG
30833617 CATATGGAGT
Statistics
Matches: 186, Mismatches: 55, Indels: 16
0.72 0.21 0.06
Matches are distributed among these distances:
157 4 0.02
158 143 0.77
159 38 0.20
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
GCTTGTGCATTCTACCTCTTCGGCTGCTGAGCGCCCGAACGCTCATTTCATGGGTTGGCTTAGGC
ATACGAAGTTCATTCCATGTCTAAGACTAGCCGGACCGAGGGATGCGGCAGAGAGACCGACAGCA
CGCAGAGGGGGATCGAACCGATCCCCA
Found at i:30833620 original size:26 final size:26
Alignment explanation
Indices: 30833590--30833642 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30833580 GTTGGCTTAG
30833590 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
30833616 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30833642 G
1 G
30833643 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30834140 original size:158 final size:156
Alignment explanation
Indices: 30833970--30834355 Score: 387
Period size: 150 Copynumber: 2.5 Consensus size: 156
30833960 GCCCGTTTCA
*
30833970 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCGGACCGAGGGTTGTGGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCGGACCGAGGGTTGTGGCA
*
30834035 GTGGGAACGACAACACTGAGAGG-GGGACCGGG-CTGATCCTCGACTTACGCATTATGCCTCTCT
66 GT-GGAACGACAACAC--ACAGGAGGGACCGGGTC-GATCCTCGACTTACGCATTATGCCTCTCT
*
30834098 GGCCGGCTCAGCACCCGAACGCTCATTTAG
127 GACCGGCTCAGCACCCGAACGCTCATTTAG
* * ** ** * **
30834128 TGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG----ATTGGACCAGACCG-AGTAC
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCACCGGACC-GAGGGTTGTGG
* * * * * *
30834187 CA--GGATCGACAGCACACAGGAGGGACCGGGTCGCTCCTCGGCTTGCGCATTCTGCCTCTCTGA
64 CAGTGGAACGACAACACACAGGAGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCTGA
* * * * * *
30834250 TCGGCTGAGCGCCCGCACGCTCGTTTTG
129 CCGGCTCAGCACCCGAACGCTCATTTAG
* *
30834278 TGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-CCGGACCGAGGGTTGTGGC
*
30834343 AGTAGGACCGACA
65 AGT-GGAACGACA
30834356 GCGGGATCGG
Statistics
Matches: 178, Mismatches: 36, Indels: 28
0.74 0.15 0.12
Matches are distributed among these distances:
149 7 0.04
150 90 0.51
151 12 0.07
154 14 0.08
155 11 0.06
158 41 0.23
159 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCGGACCGAGGGTTGTGGCA
GTGGAACGACAACACACAGGAGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCTGACC
GGCTCAGCACCCGAACGCTCATTTAG
Found at i:30834987 original size:158 final size:157
Alignment explanation
Indices: 30834501--30835001 Score: 397
Period size: 158 Copynumber: 3.2 Consensus size: 157
30834491 CCTAGTCTAA
* * ** * *
30834501 GCATATGAAGTTCATTCCCAGTCTAAGATCGGATCATACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
30834566 GCATGCAAGAGGGATCGAATCGA-TCCCCGGCTTGTGCATTCTACCTC-TCTAGCTGACTGAGCG
66 GCACGCAGGGGGGATC-AAGCCAGTCCCCGGCTTGTGCATTTTACCTCTTC-GGCTG-CTGAGCG
* * *
30834629 CCCGTACACCCATTTCGTGGGTTGGCTTAG
128 CCCGAACGCTCATTTCGTGGGTTGGCTTAG
* ** *** * * * * ** ** * *
30834659 GCATACGAAGTTCATTTCGTGTCTAACCCTAG-CCGGATCGAGGGATGTGGTAGTGGGACCAACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
30834723 GCACGTAGAGGGGGATC-GGACC-GATCCCCGGC-T-TGCATATTATGCCTCTCCGATCGGCTCA
66 GCACGCAG-GGGGGATCAAG-CCAG-TCCCCGGCTTGTGCAT-TT-TACCTCTTCG-GCTGCTGA
* * ** *
30834784 GCACCCGAACGCTCATTTCATGGGTTAACTTTG
125 GCGCCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * *
30834817 ACAAACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
30834882 GCACGCAGGGGGGATCAAGCCAGTCCCCGGCTTGTGCATTTTACCTCTTCGGCCTGCTGAGCGCC
66 GCACGCAGGGGGGATCAAGCCAGTCCCCGGCTTGTGCATTTTACCTCTTCGG-CTGCTGAGCGCC
* *
30834947 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGAACGCTCATTTCGTGGGTTGGCTTAG
30834975 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
30835002 CATACGGAGT
Statistics
Matches: 247, Mismatches: 81, Indels: 30
0.69 0.23 0.08
Matches are distributed among these distances:
156 5 0.02
157 30 0.12
158 170 0.69
159 37 0.15
160 5 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGATCAAGCCAGTCCCCGGCTTGTGCATTTTACCTCTTCGGCTGCTGAGCGCCC
GAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:30835012 original size:26 final size:26
Alignment explanation
Indices: 30834975--30835027 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30834965 GTTGGCTTAG
30834975 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30835001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30835027 G
1 G
30835028 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30835712 original size:26 final size:26
Alignment explanation
Indices: 30835676--30835728 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30835666 GTTGGCTTAG
30835676 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30835702 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30835728 G
1 G
30835729 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30835882 original size:26 final size:26
Alignment explanation
Indices: 30835846--30835898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30835836 GTTGACTTAG
*
30835846 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
30835872 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
30835898 G
1 G
30835899 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:30836326 original size:26 final size:26
Alignment explanation
Indices: 30836297--30836349 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30836287 GTTGGATTAG
30836297 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
30836323 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
30836349 G
1 G
30836350 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:30836880 original size:26 final size:26
Alignment explanation
Indices: 30836850--30836902 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30836840 GTTGGCTTAG
30836850 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30836876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30836902 G
1 G
30836903 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30837453 original size:26 final size:26
Alignment explanation
Indices: 30837417--30837469 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30837407 GTTGGCTTAG
30837417 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30837443 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30837469 G
1 G
30837470 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30837616 original size:26 final size:26
Alignment explanation
Indices: 30837586--30837638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30837576 GTTGACTTAG
*
30837586 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
30837612 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
30837638 G
1 G
30837639 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:30838963 original size:26 final size:26
Alignment explanation
Indices: 30838933--30838985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30838923 GTTGACTTAG
*
30838933 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
30838959 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30838985 G
1 G
30838986 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30839469 original size:26 final size:26
Alignment explanation
Indices: 30839432--30839484 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30839422 GTTGGCTTAG
*
30839432 GCATACGAAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
30839458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
30839484 G
1 G
30839485 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30839809 original size:158 final size:157
Alignment explanation
Indices: 30839534--30840047 Score: 520
Period size: 158 Copynumber: 3.3 Consensus size: 157
30839524 TAGGATTGGT
* * * * * * * *
30839534 AGCACGCAG-GGGGGACCGAGCCGATCCTCGACTTGCGCATTCTACC-C-TCTGGCCAGATGAGC
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-AGCC-GGTTAGC
* * * * * *
30839596 ACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAACCTCAACC
64 CCCCGAATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCTCAATC
* *
30839661 GGATCGAGGGTTGTGGCAGTGGGACCGAC
129 GGATCGAGGGTTGTGGCAGCGGGATCGAC
* * * *
30839690 AGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTGCGCATTATGCCTC-TCTAGCTGGCTTAGC
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-AGCCGG-TTAGC
* * * **
30839754 GCCCGAATGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGA
64 CCCCGAATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAACCTCA-A
* * *
30839818 TCGGATCGAGGGTTGCGGCAACAGGATCGAC
127 TCGGATCGAGGGTTGTGGCAGCGGGATCGAC
* * * * * *
30839849 AGCACGCAGA-GGGGACCGGGTCGGTCCTCGGCTTACGCATTTTGCCTCTTCGGCCGGTTAGCCC
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGTTAGCCC
* * * * *
30839913 CCGTACGCTCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
66 CCGAATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CCTCAATCG
*
30839978 GA-CTGAGGGTTGTGGCAGCGAGATCGAC
130 GATC-GAGGGTTGTGGCAGCGGGATCGAC
** *
30840006 AGCACATAGAGGGGGACCGGGCCGATCCCCGGCTTGCTCATT
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
30840048 TCATGTGTTG
Statistics
Matches: 290, Mismatches: 58, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
156 13 0.04
157 115 0.40
158 121 0.42
159 41 0.14
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGTTAGCCC
CCGAATGCTCGTTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCTCAATCGG
ATCGAGGGTTGTGGCAGCGGGATCGAC
Found at i:30840094 original size:26 final size:26
Alignment explanation
Indices: 30840064--30840116 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30840054 GTTGGCTTAG
30840064 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
30840090 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30840116 G
1 G
30840117 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30841180 original size:26 final size:26
Alignment explanation
Indices: 30841131--30841183 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30841121 GTTGGCTTAG
**
30841131 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCAACCCATGTCTAA
30841157 GCATACGGAGTTCACACCCA-GTCTAA
1 GCATACGGAGTTCA-ACCCATGTCTAA
30841183 G
1 G
30841184 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCATGTCTAA
Found at i:30841883 original size:26 final size:27
Alignment explanation
Indices: 30841853--30841906 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
30841843 GTTGACTTAG
*
30841853 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
30841879 GCATACGGAGTTCATTCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
30841906 G
1 G
30841907 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCCAGTCTAA
Found at i:30842205 original size:158 final size:157
Alignment explanation
Indices: 30841920--30842216 Score: 431
Period size: 158 Copynumber: 1.9 Consensus size: 157
30841910 AGATTGGACC
* * *
30841920 GAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATT
1 GAGGGTTGCGACAGCAGGACCGACAGCACACAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATT
* * *
30841985 CTGCCTCTCCGGTCGGCTGAGCGCCCGCAGGCCTATTTCGTGGGTTGGCTTAGGCATAGGAGTTC
66 CCGCCTCTCCGGTCGGCTGAGCGCCCACACGCCTATTTCGTGGGTTGGCTTAGGCATAGGAGTTC
30842050 ATTCCATGTCTATGCCCAAGCTAGAAT
131 ATTCCATGTCTATGCCCAAGCTAGAAT
* * * *
30842077 GAGGGTTGTGGCAGCAGGACCGACAGCACATAGAGGGGGACCGGGCCGATCCCC-GACTTGTGCA
1 GAGGGTTGCGACAGCAGGACCGACAGCACACAG-GGGGGACCGGGCCGATCCCCAG-CTTGCGCA
30842141 TTCCGCCTCTCCGGCTC-GCTGAGCG-CCACACG-CTCATTTCGTGGGTTGGCTTAGGCATACGG
64 TTCCGCCTCTCCGG-TCGGCTGAGCGCCCACACGCCT-ATTTCGTGGGTTGGCTTAGGCATA-GG
30842203 AGTTCATTCCATGT
126 AGTTCATTCCATGT
30842217 TTAAGCATAC
Statistics
Matches: 125, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
156 2 0.02
157 58 0.46
158 63 0.50
159 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (157 bp):
GAGGGTTGCGACAGCAGGACCGACAGCACACAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATT
CCGCCTCTCCGGTCGGCTGAGCGCCCACACGCCTATTTCGTGGGTTGGCTTAGGCATAGGAGTTC
ATTCCATGTCTATGCCCAAGCTAGAAT
Found at i:30842247 original size:26 final size:26
Alignment explanation
Indices: 30842195--30842247 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30842185 GTTGGCTTAG
*
30842195 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30842221 GCATACGGAGTTCATTACCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
30842247 G
1 G
30842248 AGTCTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30842336 original size:11 final size:11
Alignment explanation
Indices: 30842317--30842349 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
30842307 CCCAGGGCAC
30842317 CATCGTCGGAG
1 CATCGTCGGAG
*
30842328 CATCATCGGAG
1 CATCGTCGGAG
30842339 CATCGTCGGAG
1 CATCGTCGGAG
30842350 AGCCTAATCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:30843146 original size:26 final size:26
Alignment explanation
Indices: 30843110--30843162 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30843100 GTTGGCTTAG
*
30843110 GCATAAGGAGTTCATTCC-ATGTCTAA
1 GCATAAAGAGTTCATTCCTA-GTCTAA
30843136 GCATAAAGAGTTCATTCCTAGTCTAA
1 GCATAAAGAGTTCATTCCTAGTCTAA
30843162 G
1 G
30843163 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCTAGTCTAA
Found at i:30843163 original size:185 final size:188
Alignment explanation
Indices: 30842896--30843332 Score: 458
Period size: 185 Copynumber: 2.3 Consensus size: 188
30842886 GGTTGAACGT
* ** * * **
30842896 CTGCACGCTCTTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGCACATGGA
1 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACAAAGA
* * *
30842960 GTTCATTCCCAGTCTAAGATCTGACCGGACTGAAGGTT-G-C-G-GCAGCAGGATCGACAGCACG
65 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTAGACAGAGCAGCAGGATCGACAGCACG
*
30843021 CATGGGGGGACCGG-GTCGATCCCCAGCTTGTGCATTCTGCCTCTCC-GACCGGCTGAGCAC
130 CA-GGGGGGACCGGACT-GATCCCCAGCTTGTGCATTCTGCCTCTCCAG-CCGGCTGAGCAC
* * *
30843081 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATAAAGAG
1 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACAAAGAG
* * * * *
30843146 TTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGTAGGACCAGCAGCAGGATTGG
66 TTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTA-GAC---A-G---AGCAGCAGGATCGA
* * * * * *
30843211 TAGCATGCAGGGGGGATCGGACTGATCCCTAGCTTGTGCATTCTGCCTCTCCAGCCGGTTGAGCG
123 CAGCACGCAGGGGGGACCGGACTGATCCCCAGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCA
30843276 C
188 C
* * *
30843277 CCGCACGCTCG-TTCGTGGGGTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGC
1 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
30843333 CCCAGTCGGA
Statistics
Matches: 207, Mismatches: 30, Indels: 20
0.81 0.12 0.08
Matches are distributed among these distances:
184 3 0.01
185 82 0.40
187 1 0.00
188 1 0.00
193 1 0.00
195 42 0.20
196 57 0.28
197 20 0.10
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (188 bp):
CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACAAAGAG
TTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTAGACAGAGCAGCAGGATCGACAGCACGC
AGGGGGGACCGGACTGATCCCCAGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCAC
Found at i:30843520 original size:26 final size:26
Alignment explanation
Indices: 30843491--30843542 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30843481 TGACTTAGGC
*
30843491 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACAGAGTTCATCCCCAGTCTAAGA
* *
30843517 ATACAGATTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATCCCCAGTCTAAGA
30843543 TCAGACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGA
Found at i:30844041 original size:26 final size:26
Alignment explanation
Indices: 30843991--30844043 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30843981 GTTGGCTTAG
*
30843991 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
30844017 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
30844043 G
1 G
30844044 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:30844236 original size:26 final size:26
Alignment explanation
Indices: 30844200--30844250 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30844190 TTGACTTAGG
30844200 CATACGGAGTTCATACCCAGTCTAAC
1 CATACGGAGTTCATACCCAGTCTAAC
*
30844226 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATACCCAGTCTAA
30844251 GATCTAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATACCCAGTCTAAC
Found at i:30844578 original size:26 final size:26
Alignment explanation
Indices: 30844542--30844620 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
30844532 GTTGGCTTAG
*
30844542 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
30844568 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
30844594 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
30844620 G
1 G
30844621 AGTTTGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:30845333 original size:26 final size:26
Alignment explanation
Indices: 30845303--30845354 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30845293 GTTGACTTAG
* *
30845303 GCATATGGATTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
30845329 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30845355 CATCGAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30845676 original size:129 final size:129
Alignment explanation
Indices: 30845486--30845741 Score: 341
Period size: 129 Copynumber: 2.0 Consensus size: 129
30845476 GAGGGTTGTG
* * * *
30845486 GCAGCAGGACTGGTAGCACGCAGAGGGGGATCGAGCCGATCCTCGGCTTACGCCTTATGCCTCTC
1 GCAGCAGGACTGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCCTCTC
** *
30845551 CGGCCGGGTCAACGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
66 CGGCCGACTCAACGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
* * * * * * *
30845615 GCAGCAGGATTGGCAGCATGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCGTATTCTGCCTCTC
1 GCAGCAGGACTGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCCTCTC
* * ** *
30845680 CGGTCGACTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
66 CGGCCGACTCAACGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
30845742 ATGTCTAAGC
Statistics
Matches: 108, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
129 108 1.00
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (129 bp):
GCAGCAGGACTGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCCTCTC
CGGCCGACTCAACGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
Found at i:30845936 original size:26 final size:26
Alignment explanation
Indices: 30845907--30845959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30845897 GTTGACTTAG
30845907 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
30845933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30845959 G
1 G
30845960 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30847504 original size:26 final size:26
Alignment explanation
Indices: 30847475--30847526 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30847465 GTTGACTTAG
* *
30847475 GCATATGAATTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
30847501 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
30847527 CATTAGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30848173 original size:26 final size:26
Alignment explanation
Indices: 30848144--30848196 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30848134 ATTGACTTAG
*
30848144 GCATACGAAGTTTATCCCCAGTATAA
1 GCATACGAAGTTCATCCCCAGTATAA
* * *
30848170 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTATAA
30848196 G
1 G
30848197 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTATAA
Found at i:30848940 original size:26 final size:26
Alignment explanation
Indices: 30848910--30848962 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30848900 GTTGGCTTAG
*
30848910 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
30848936 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30848962 G
1 G
30848963 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30849140 original size:26 final size:26
Alignment explanation
Indices: 30849110--30849159 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30849100 GGCTTAGGCA
30849110 TACGGAGTTCATCCCCAGTCTAAGTG
1 TACGGAGTTCATCCCCAGTCTAAGTG
*
30849136 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
30849160 ATCGGAATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGTG
Found at i:30849491 original size:25 final size:26
Alignment explanation
Indices: 30849463--30849514 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30849453 GTTGATTTAG
*
30849463 GCATATAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
30849488 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30849514 G
1 G
30849515 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:30850815 original size:159 final size:157
Alignment explanation
Indices: 30850550--30850858 Score: 393
Period size: 159 Copynumber: 2.0 Consensus size: 157
30850540 TGATCATACT
* * * * *
30850550 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGAATCGGGCCGATCCCTGGCTTGCG
1 AGACCGAAGGTTGCGGCAGCAGGACCGGCAGCACGCAGGGGAACCGGGCCGATCCCCGGCTTGCA
* * * * * * *
30850615 TATTTTGCCCCTTCGGTCGACTGAGCCCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCCCTCCAGCCGACTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGG
*
30850680 AGTTCTTTCCATGTCTAAGCCCCAGCC
131 AGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
30850707 AGACCGAAGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTG
1 AGACCGAAGGTTGCGGCAGCAGGACCGGCAGCACGC--AGGGGAACCGGGCCGATCCCCGGCTTG
* ** * * *
30850772 CACATTCTGCCTCTCCAGCCGGTTGAGCACCCGTATGCTTGTTTCGTGGGTTGGCTTAGGCATAC
64 CACATTCTGCCCCTCCAGCCGACTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAC
30850837 GGAGTTCATTCCATGTCTAAGC
129 GGAGTTCATTCCATGTCTAAGC
30850859 ATACGGAGTT
Statistics
Matches: 127, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
157 31 0.24
159 96 0.76
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (157 bp):
AGACCGAAGGTTGCGGCAGCAGGACCGGCAGCACGCAGGGGAACCGGGCCGATCCCCGGCTTGCA
CATTCTGCCCCTCCAGCCGACTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAGCC
Found at i:30850867 original size:26 final size:26
Alignment explanation
Indices: 30850831--30850883 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30850821 GTTGGCTTAG
30850831 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
30850857 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30850883 G
1 G
30850884 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30851970 original size:26 final size:26
Alignment explanation
Indices: 30851921--30851973 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30851911 GTTGACTTAG
**
30851921 GCATACGGAGTTCATCCTCGGTCTAA
1 GCATACGGAGTTCATCCTAAGTCTAA
30851947 GCATACGGAGTTCATTCC-AAGTCTAA
1 GCATACGGAGTTCA-TCCTAAGTCTAA
30851973 G
1 G
30851974 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTAAGTCTAA
Found at i:30852673 original size:26 final size:26
Alignment explanation
Indices: 30852643--30852693 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30852633 GATGACTTAG
30852643 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
30852669 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
30852694 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30853039 original size:159 final size:159
Alignment explanation
Indices: 30852847--30853152 Score: 409
Period size: 159 Copynumber: 1.9 Consensus size: 159
30852837 CTAGCCAGAT
* * * * *
30852847 CGAGGGTTGTGGTAGCGGGATCAACGGCACGCAGAGG-GGGACCGGGCTGATCCCCGGCTTGCAC
1 CGAGGGTTGTGATAGCAGGATCAACAGCACGCAG-GGAGGGACCGAGCTGATCCCCAGCTTGCAC
* * * * * *
30852911 ATTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGA
65 ATTATACCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGCTTGACTTAGGCATATGGA
30852976 GTTCATTCCCA-GTCTAAGATCAGATCGGAC
130 GTTCATT-CCATGTCTAAGATCAGATCGGAC
* * *
30853006 CGAGGGTTGTGATAGCAGGATCGACAGCTCGCAGGGAGGGACCGAGCTGATCCCCAGCTTGCGCA
1 CGAGGGTTGTGATAGCAGGATCAACAGCACGCAGGGAGGGACCGAGCTGATCCCCAGCTTGCACA
* * ** *
30853071 TTCTACCTCTCCGGCTGGCTGAGCACTGGCACGCTCGTTTCATGGCTTGGCTTAGGCATATGGAG
66 TTATACCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGCTTGACTTAGGCATATGGAG
30853136 TTCATTCCATGTCTAAG
131 TTCATTCCATGTCTAAG
30853153 CATACGGTGT
Statistics
Matches: 126, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
158 5 0.04
159 121 0.96
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
CGAGGGTTGTGATAGCAGGATCAACAGCACGCAGGGAGGGACCGAGCTGATCCCCAGCTTGCACA
TTATACCTCTCCGGCTGGCTCAGCACCCGCACGCTCGTTTCATGGCTTGACTTAGGCATATGGAG
TTCATTCCATGTCTAAGATCAGATCGGAC
Found at i:30853156 original size:26 final size:26
Alignment explanation
Indices: 30853126--30853178 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30853116 CTTGGCTTAG
*
30853126 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30853152 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30853178 G
1 G
30853179 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30859821 original size:26 final size:26
Alignment explanation
Indices: 30859771--30859822 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30859761 TTGACTTAGC
* **
30859771 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAACCTAAG
*
30859797 CATACAGAGTTCATTCCCAACCTAAG
1 CATACAGAGTTCATCCCCAACCTAAG
30859823 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAACCTAAG
Found at i:30860099 original size:159 final size:159
Alignment explanation
Indices: 30859850--30860299 Score: 464
Period size: 159 Copynumber: 2.8 Consensus size: 159
30859840 GTTGCGACAA
* * * ** * *
30859850 CAGGATCGGCAGCACGC-AGGGGGATCGGGCCAATCATCGGCTTGCACATTCTGCCTCTCCGGCT
1 CAGGACCGGCAGCACGCGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCT
* * * * * *
30859914 GGCTGAGCACCCGTACGCCCATTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTTTAA
66 GACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** **
30859979 GCACCAG-CCGGATGGAGGGTTATGGCAG
131 GCACCAGACCGGATCGAGAATTACAGCAG
** * *
30860007 TGGGACCGGCAGCACGCTGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
1 CAGGACCGGCAGCACGC-GAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGC
* * *
30860072 TGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCT
65 TGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCT
* *
30860136 AAG-ATCAGACCGGATCGAGAATTGCAGCAG
129 AAGCACCAGACCGGATCGAGAATTACAGCAG
** * * * *
30860166 CAGGATTGACAGCACGC-AGGGAGGGATCGGGTCGATACCTGGCTTGTGCA-TACTGCCTCTCCG
1 CAGGACCGGCAGCACGCGA-GG-GGGATCGGGTCGATCCCCGGCTTGCGCATTA-TGCCTCTCCG
* * * *
30860229 GC-CAGCTGAGCACCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
63 GCTGA-CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
30860293 CTAAGCA
127 CTAAGCA
30860300 TACGAAGTTC
Statistics
Matches: 239, Mismatches: 44, Indels: 17
0.80 0.15 0.06
Matches are distributed among these distances:
157 15 0.06
158 11 0.05
159 210 0.88
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
CAGGACCGGCAGCACGCGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCT
GACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCACCAGACCGGATCGAGAATTACAGCAG
Found at i:30860321 original size:26 final size:26
Alignment explanation
Indices: 30860271--30860323 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30860261 GTTGGCTTAG
* *
30860271 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
30860297 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
30860323 G
1 G
30860324 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:30860677 original size:26 final size:26
Alignment explanation
Indices: 30860640--30860692 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30860630 GTTGACTTAG
30860640 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
30860666 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
30860692 G
1 G
30860693 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:30860774 original size:356 final size:362
Alignment explanation
Indices: 30860220--30860874 Score: 835
Period size: 356 Copynumber: 1.8 Consensus size: 362
30860210 TGTGCATACT
* * * * *
30860220 GCCTCTCCGGCCAGCTGAGCACCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCAGCCAGCTAAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
* * * *
30860285 TTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGCGGGTTGCAGCA
66 TCCCATATCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAG--
* ** *
30860350 CCAGGACCAGCAGTAGGATCGACAGCACGTAGAGGGGGATTGAGCCGATCCATGGCTTGTGCATT
129 -CA-GA-CAGCA--AGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATGGCTTATGCATT
30860415 CTGCCTCCCCGACCGACTGAGCGCCCGCAAG-CTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
189 CTGCCTCCCCGACCGACTGAGCGCCCGCAAGCCT-ATTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
30860479 TCATTGCAGGTCTAAGGCCCAGCCGAACCGAGGGTTGTGGTAGTAGGATCGGCAACACGTAGAGT
253 TCATTCCAGGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGTAGTAGGATCGGCAACACGTAGAGT
30860544 GGGACCGGGTTGATCCCCGGCTTGTGCATTATGCCTATTCGGTTG
318 GGGACCGGGTTGATCCCCGGCTTGTGCATTATGCCTATTCGGTTG
* * *
30860589 GCCTCTCCAGCCGGCTAAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCA
1 GCCTCTCCAGCCAGCTAAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
*
30860654 TCCCCA-ATCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-G
66 T-CCCATATCTAAGCATACGA-AGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAG
* *
30860716 -A-A-TGC-AGGATCGATAGCACGCAG-GGGGGACCGAGCCGATCC-TCGGCTTATGCATTCTGC
129 CAGACAGCAAGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCAT-GGCTTATGCATTCTGC
* * * * * * * *
30860775 CTCTCTGACTGGCTGAGCGCCTGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT
193 CTCCCCGACCGACTGAGCGCCCGCAAGCCTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
* ** * *
30860840 CCATGTCTAAGCCCCAGGTGGACGGAGGGTTGTGG
258 CCAGGTCTAAGCCCCAGCCGAACCGAGGGTTGTGG
30860875 CAACGGGACC
Statistics
Matches: 248, Mismatches: 34, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
355 1 0.00
356 113 0.46
357 18 0.07
360 2 0.01
362 1 0.00
364 1 0.00
368 2 0.01
369 107 0.43
370 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (362 bp):
GCCTCTCCAGCCAGCTAAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
TCCCATATCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCA
GACAGCAAGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATGGCTTATGCATTCTGCCTC
CCCGACCGACTGAGCGCCCGCAAGCCTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
GGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGTAGTAGGATCGGCAACACGTAGAGTGGGACCGG
GTTGATCCCCGGCTTGTGCATTATGCCTATTCGGTTG
Found at i:30860972 original size:110 final size:110
Alignment explanation
Indices: 30860774--30860994 Score: 343
Period size: 110 Copynumber: 2.0 Consensus size: 110
30860764 ATGCATTCTG
* * * * * *
30860774 CCTCTCTGACTGGCTGAGCGCCTGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCAT
* *
30860839 TCCATGTCTAAGCCCCAGGTGGACGGAGGGTTGTGGCAACGGGAC
66 TCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAACGGGAC
*
30860884 CCTCTCCGACCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCAT
* *
30860949 TCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGCAGCGGGAC
66 TCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAACGGGAC
30860994 C
1 C
30860995 GGCAGCACGC
Statistics
Matches: 100, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
110 100 1.00
ACGTcount: A:0.16, C:0.28, G:0.33, T:0.24
Consensus pattern (110 bp):
CCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCAT
TCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAACGGGAC
Found at i:30862023 original size:26 final size:26
Alignment explanation
Indices: 30861973--30862025 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30861963 GTTGACTTAG
*
30861973 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
30861999 GCATATGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
30862025 G
1 G
30862026 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:30862221 original size:12 final size:12
Alignment explanation
Indices: 30862206--30862236 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
30862196 TGAGGGTTGT
30862206 GGTAGCAGGATC
1 GGTAGCAGGATC
30862218 GGTAGCAGGATC
1 GGTAGCAGGATC
*
30862230 GGCAGCA
1 GGTAGCA
30862237 CGCAGAGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.42, T:0.13
Consensus pattern (12 bp):
GGTAGCAGGATC
Found at i:30862694 original size:158 final size:159
Alignment explanation
Indices: 30862353--30862696 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 159
30862343 CCCAATCTAA
* * *
30862353 GCATACAGAGTTCATTCC-TAGTCTAAGATCGGATCAGACCGAAGGTTGCGGTAGTAGGATCGAT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAAGGTTGCGGTAGCAGGATCGAC
* * *
30862417 AGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTGCACATTATGTCTCTCCGACCGACGGAGCA
65 AGCACGCAGAGGGGGACCAGGCTGATCCCCAGCTTGCACATTATGCCTCTCCGACCGACGGAGCA
30862482 CCCGTACGCTCGTTTCGTAGGTTGACTTAG
130 CCCGTACGCTCGTTTCGTAGGTTGACTTAG
* * *
30862512 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAAGGTTGCGGTAGCAGGATCGAC
* ** * * * *** * *
30862576 AGCACGCAG-GGGGGACC-GGGTCGATCCCCAGCTTGTGCGTTCTGCCTCTTCGGTTGGCTGAGC
65 AGCACGCAGAGGGGGACCAGGCT-GATCCCCAGCTTGCACATTATGCCTCTCCGACCGACGGAGC
* * * *
30862639 GCTCGTATGCTCGTTTCG-AGGGTTGTCTTAG
129 ACCCGTACGCTCGTTTCGTA-GGTTGACTTAG
** *
30862670 GCATATGGAGTTTATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
30862697 CATACGGGGT
Statistics
Matches: 153, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
157 7 0.05
158 82 0.54
159 62 0.41
160 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAAGGTTGCGGTAGCAGGATCGACA
GCACGCAGAGGGGGACCAGGCTGATCCCCAGCTTGCACATTATGCCTCTCCGACCGACGGAGCAC
CCGTACGCTCGTTTCGTAGGTTGACTTAG
Found at i:30862700 original size:26 final size:26
Alignment explanation
Indices: 30862670--30862722 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30862660 GTTGTCTTAG
* *
30862670 GCATATGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
30862696 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30862722 G
1 G
30862723 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30862993 original size:13 final size:13
Alignment explanation
Indices: 30862975--30863004 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
30862965 TGCGTATTAA
30862975 GCCTATCCGGTAG
1 GCCTATCCGGTAG
30862988 GCCTATCCGGTAG
1 GCCTATCCGGTAG
30863001 GCCT
1 GCCT
30863005 CTCCTGTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.33, G:0.30, T:0.23
Consensus pattern (13 bp):
GCCTATCCGGTAG
Found at i:30863088 original size:26 final size:26
Alignment explanation
Indices: 30863054--30863104 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30863044 CGACTTAGAT
*
30863054 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
30863080 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
30863105 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:30863548 original size:158 final size:158
Alignment explanation
Indices: 30863362--30863816 Score: 459
Period size: 159 Copynumber: 2.9 Consensus size: 158
30863352 ACATGCTAGT
* * * *
30863362 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAAGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTT
* * *
30863427 GCGGCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTC
66 GCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTC
* *
30863492 TCCGGCCGGCTAAGCGCCCGGACGCCCG
131 TCCGACCGGCTAAGCGCCCGCACGCCCG
* * * **
30863520 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATCTCTAAGCCCCAG-CC-AGATCG-AG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGA-ATCGAAG
* * * ** * * * *
30863581 GATTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCGGGCTGATTCCTGGCTTGCTCATTAT
63 G-TTGCGGCAGCAGGATCGACAGCACGTAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCT
* * * **
30863646 GCCTTTTCGACCGGCTCAGCGCCCGCACGCTTG
126 GCCTCTCCGACCGGCTAAGCGCCCGCACGCCCG
* * * * * *
30863679 TTTCATGTGTTGACTTAGGCATACGGAGTTAATTCTCAGTCTAAGATCAGACCGGATCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTT
* * * * * ** *
30863744 GCGGCAGCAGGATCAACCGCACATAAGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTC
66 GCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTC
30863809 TCCGACCG
131 TCCGACCG
30863817 ACTGAGTGCC
Statistics
Matches: 231, Mismatches: 57, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 7 0.03
158 103 0.45
159 117 0.51
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTT
GCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTC
TCCGACCGGCTAAGCGCCCGCACGCCCG
Found at i:30863750 original size:159 final size:158
Alignment explanation
Indices: 30863215--30863751 Score: 517
Period size: 159 Copynumber: 3.4 Consensus size: 158
30863205 CATGGATAGG
* * *
30863215 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTGAGAT
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCGGATCGAGGGTTGCGGCAGCGAGAT
* * * * * *
30863280 CGGTACCACGTAGCGGGGGACCGGGTTGA-TCCTCGGCTTACGCATTATGCCACTCCGGTCGACT
66 CGGTAGCACGTAG-GGGGGACCGGGCTGATTCCT-GGCTTGCGCATTATGCCTCTCCGGCCGGCT
* * * *
30863344 GAGCACCCACATGCTAGTTTTCGTGGGTTGA
129 AAGCGCCCGCACGCTAG-TTTCGTGGGTTGA
* * * * * * * *
30863375 CTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGAACCGAAGGTTGCGGCAGCAAG
1 CTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGATCGAGGGTTGCGGCAGCGAG
** * * * * *
30863438 ATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
64 ATCGGTAGCACGTAGGGGGGACCGGGCTGATTCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCT
* ** *
30863503 AAGCGCCCGGACGCCCGTTTCGTGGGTTGG
129 AAGCGCCCGCACGCTAGTTTCGTGGGTTGA
* * * * * * *
30863533 CTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGCGGGAC
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCGGATCGAGGGTTGCGGCAGCGAGAT
* * * * *
30863598 CGGTAGCACGTAGAGGGGGACCGGGCTGATTCCTGGCTTGCTCATTATGCCTTTTCGACCGGCTC
66 CGGTAGCACGTAG-GGGGGACCGGGCTGATTCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTA
* * *
30863663 AGCGCCCGCACGCTTGTTTCATGTGTTGA
130 AGCGCCCGCACGCTAGTTTCGTGGGTTGA
* * *
30863692 CTTAGGCATACGGAGTTAATTCTCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGC
1 CTTAGGCATAGGGAGTTCATTC-CATGTCTAAGCACCAG-CCGGATCGAGGGTTGCGGCAGC
30863752 AGGATCAACC
Statistics
Matches: 296, Mismatches: 73, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 68 0.23
159 161 0.54
160 61 0.21
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCGGATCGAGGGTTGCGGCAGCGAGAT
CGGTAGCACGTAGGGGGGACCGGGCTGATTCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTAA
GCGCCCGCACGCTAGTTTCGTGGGTTGA
Found at i:30863999 original size:26 final size:26
Alignment explanation
Indices: 30863963--30864012 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30863953 GACTTAGGCA
30863963 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
30863989 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
30864013 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:30864480 original size:343 final size:341
Alignment explanation
Indices: 30863849--30864672 Score: 1069
Period size: 343 Copynumber: 2.4 Consensus size: 341
30863839 TTGTGGTTTG
* * *
30863849 TGGCAGCGAGATCAGCAGCACACAGCGGGGGACCGAGCTGATCCCCGGCTTACGCATTATGCCTC
1 TGGCAGCGGGATCA-CAGCACGCAGCGGGGGACCGAGCTGAT-CCCGGCTTGCGCATTATGCCTC
* * * * * *
30863914 TCCGATCGACTGAACGCCCACACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATCCCC
64 TCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
* * * * *
30863979 AGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCCGATAGCAGG
129 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTCAGACAGCAGG
* * * *
30864044 AAAGGCAGCATGCAGGAGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTTCGACCGACT
194 AAAGGCAGCACGCAGGAGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACT
**
30864109 ATGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCC
259 ATGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCC
* ** *
30864174 CAGTTGGATTGAGGGTTA
324 CAGTCGGACCGAGGATTA
* *
30864192 TGGCAGCGGGATCGACAGCACGTAGCGGGGGACCGAGCTGATCCTCGGCTTGTGCATTATGCCTC
1 TGGCAGCGGGATC-ACAGCACGCAGCGGGGGACCGAGCTGATCC-CGGCTTGCGCATTATGCCTC
* *
30864257 TTCGATCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
64 TCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
* *
30864322 AGTCTAAGCAT-CTAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAG-CAGTA
129 AGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT-CAGACAGCA
** * ** * *
30864385 GGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGA
192 GGAAAGGCAGCACGCAGGAGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGA
* *
30864450 CTGA-GCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
257 CT-ATGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAG
*
30864514 CCCCAGTCGGACCGAGGATTG
321 CCCCAGTCGGACCGAGGATTA
* * * * * * *
30864535 TGGCAGCGGGACCTACAGCATGCAACGGGGGATCGGGCTAATCCCTGGCTTGCACATTATGCCTC
1 TGGCAGCGGGATC-ACAGCACGCAGCGGGGGACCGAGCTGATCCC-GGCTTGCGCATTATGCCTC
** * * * *
30864600 TCCGGCCGGCTGAGCGCCCACACACTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCT
64 TCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCC
30864665 AGTCTAAG
129 AGTCTAAG
30864673 ATCAGATTGA
Statistics
Matches: 417, Mismatches: 58, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
342 4 0.01
343 409 0.98
344 4 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (341 bp):
TGGCAGCGGGATCACAGCACGCAGCGGGGGACCGAGCTGATCCCGGCTTGCGCATTATGCCTCTC
CGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTCAGACAGCAGGAA
AGGCAGCACGCAGGAGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTAT
GCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCA
GTCGGACCGAGGATTA
Found at i:30864630 original size:159 final size:158
Alignment explanation
Indices: 30864379--30865139 Score: 640
Period size: 159 Copynumber: 4.8 Consensus size: 158
30864369 GAGGGTTGCA
* * * * *
30864379 GCAGTAGGATCGGCAGCACGCAG-GGGGGACC-GAGCCGATCCCTGGCTTGCGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCATGCAGAGGGGGACCAG-GCTGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * *
30864442 CCGGCCGACTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 CCGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * *
30864507 GTCTAAGCCCCAGTCGGACCGAGGATTGTG
130 GTCTAAG-ACCAGTCGGACCGAGGGTTATG
* * * * * * * * *
30864537 GCAGCGGGACCTACAGCATGCA-ACGGGGGATCGGGCTAATCCCTGGCTTGCACATTATGCCTCT
1 GCAGCAGGATCGACAGCATGCAGA-GGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * * *
30864601 CCGGCCGGCTGAGCGCCCACACACTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCC-T
65 CCGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * ** *
30864665 AGTCTAAGATCAGATTGAATTGAGGGTTACG
130 -GTCTAAGACCAG-TCGGACCGAGGGTTATG
* * * * * * * *
30864696 GCAACAAGATCGATAGCA--CATAGAGAGGATCAGGCTGATCCCCGACTTACGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCATGCAGAG-GGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCT
** * * ** * * * *
30864759 CCGATCGGTTCAACATCTGCACGCCCTTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 CCGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * * *
30864824 GTCTAAGCCCCAGCCAGACCGAGGGTTGTT
130 GTCTAAG-ACCAGTCGGACCGAGGGTTATG
* ** * * *
30864854 GTAGTGGGA-CTGGCAGCACGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCT
1 GCAGCAGGATC-GACAGCATGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * *
30864918 TCGGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGTATACGGAGTTCATTCCCA
65 CCGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
* * *
30864983 -ATCTAAGATCAGACTGGACCGAGGGTTATG
129 TGTCTAAGACCAGTC-GGACCGAGGGTTATG
* * * *
30865013 GTAGCAGGATCGACAGCATGTAG-GGTGGGACCAGGCTGGTCCCCGACTTGCGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCATGCAGAGG-GGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * *
30865077 CCGACCGACTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCC
65 CCGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
30865140 CAATCTAATA
Statistics
Matches: 465, Mismatches: 122, Indels: 32
0.75 0.20 0.05
Matches are distributed among these distances:
157 4 0.01
158 131 0.28
159 321 0.69
160 9 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GCAGCAGGATCGACAGCATGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTC
CGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGACCAGTCGGACCGAGGGTTATG
Found at i:30864912 original size:317 final size:318
Alignment explanation
Indices: 30864428--30865139 Score: 874
Period size: 317 Copynumber: 2.2 Consensus size: 318
30864418 CCCTGGCTTG
* * * *
30864428 CGCATTCTGCCTCTCCGGCCGACTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACCGACTTAACACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* * *
30864493 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGATTGTGGCAGCGGGACCTACAGCATGC
66 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGATTGTGGCAGCGGGACCTACAGCACGC
* * * *
30864558 AACGGGGGATCGGGCTAATCCCTGGCTTGCACATTATGCCTCTCCGGCCGGCTGAGCGCCCACAC
131 AACGGGGGACCAGGCTAATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCACAC
* * * * * **
30864623 ACTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGATTGAATTGA
196 ACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGAACCGA
* *
30864688 GGGTTACGGCAACAAGATCGATAGCACATAGAG-AGGATCAGGCTGATCCCCGACTTA
261 GGGTTACGGCAACAAGATCGACAGCACATAGAGTAGGACCAGGCTGATCCCCGACTTA
* * * *
30864745 CGCATTCTGCCTCTCCGATCG-GTTCAACATCTGCACGCCCTTTTCATGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGACCGACTT-AACACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
* * * * *
30864809 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTTGTAGTGGGA-CTGGCAGCAC
65 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGATTGTGGCAGCGGGACCT-ACAGCAC
* * * *
30864873 GCAGA-GGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCG
129 GCA-ACGGGGGACCAGGCTAATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCA
* * * * *
30864937 CACGCTCATTTCATGGGTTGACTTATGTATACGGAGTTCATTCCCAATCTAAGATCAGACTGGAC
193 CACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGAAC
* * * * ** * * * *
30865002 CGAGGGTTATGGTAGCAGGATCGACAGCATGTAGGGTGGGACCAGGCTGGTCCCCGACTTG
258 CGAGGGTTACGGCAACAAGATCGACAGCACATAGAGTAGGACCAGGCTGATCCCCGACTTA
* * * * * *
30865063 CGCATTCTGCCTCTCCGACCGACTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGACCGACTTAACACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
*
30865128 GGAGTTTATTCC
66 GGAGTTCATTCC
30865140 CAATCTAATA
Statistics
Matches: 331, Mismatches: 59, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
316 3 0.01
317 242 0.73
318 84 0.25
319 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (318 bp):
CGCATTCTGCCTCTCCGACCGACTTAACACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGATTGTGGCAGCGGGACCTACAGCACGC
AACGGGGGACCAGGCTAATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCACAC
ACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGAACCGA
GGGTTACGGCAACAAGATCGACAGCACATAGAGTAGGACCAGGCTGATCCCCGACTTA
Found at i:30865611 original size:26 final size:26
Alignment explanation
Indices: 30865572--30865629 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
30865562 CTATTTCTAA
* *
30865572 AAAAATTTTAAAAAATCTTGAAACAT
1 AAAAAGTTTAAAAAATCTTGAAAAAT
* *
30865598 AAAAAGTTTCAAAAATTTTGAAAAAT
1 AAAAAGTTTAAAAAATCTTGAAAAAT
30865624 AGAAAA
1 A-AAAA
30865630 CGGGTCATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTTGAAAAAT
Found at i:30866335 original size:158 final size:156
Alignment explanation
Indices: 30865855--30866356 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 156
30865845 CTCAGTCTAA
* * * **
30865855 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACAGAGGGTTGGACCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAAACGGAC-GAGGGTTGGA-CAGCAGGATCAAC
* * * * * * *
30865919 AACACGCAGGGGGGACCAGATCGATCCCCGATTTGTGCATTCTGCCAT-TCCGGCCGGCTGAGCG
63 AGCACGCAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCC-TCTCCGACCGACTGAGCG
* ** *
30865983 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CTCGCACGATCATTTCGTGGGTTGGCTTAG
* ** * ** * * **
30866013 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGTGGGA-CTAAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAAACGGA-CGAGGGTTG-GACAGCAGGATC-AAC
* * * * * *
30866077 AGCACGCAGAGGGGGATCAGGTTGATCCCCGACTTTCGTATTATGCCTCTCCGATC-AGCTCAGT
63 AGCACGCAG-GGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGA-CTGAG-
* * *
30866141 GGCT-GCAC-ACTCTTTTCGTGGGTTGACTTAG
125 CGCTCGCACGA-TCATTTCGTGGGTTGGCTTAG
*
30866172 GCATACAGAGTTCATTCTCA-GTCTAAGATCAAAACGGATCGAGGGTTGCGACAGCAGGATCAAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAAAACGGA-CGAGGGTTG-GACAGCAGGATCAAC
* * ** *
30866236 AGCACGCAGGGGAGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
63 AGCACGCAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
30866301 TCGCACGATCATTTCGTGGGTTGGCTTAG
128 TCGCACGATCATTTCGTGGGTTGGCTTAG
30866330 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
30866357 CATGCAGAGT
Statistics
Matches: 269, Mismatches: 60, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
157 9 0.03
158 136 0.51
159 119 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAAACGGACGAGGGTTGGACAGCAGGATCAACAGC
ACGCAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCTCG
CACGATCATTTCGTGGGTTGGCTTAG
Found at i:30866688 original size:26 final size:26
Alignment explanation
Indices: 30866658--30866710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30866648 GTTGACTTAG
30866658 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
30866684 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
30866710 G
1 G
30866711 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:30867188 original size:26 final size:26
Alignment explanation
Indices: 30867158--30867210 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30867148 GTTGTCTTAG
*
30867158 GCATAC-GGAGTTTATTCCATGTCTAA
1 GCATACGGGAGTTCATTCCA-GTCTAA
*
30867184 GCATACGGGGGTTCATTCCAGTCTAA
1 GCATACGGGAGTTCATTCCAGTCTAA
30867210 G
1 G
30867211 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATACGGGAGTTCATTCCAGTCTAA
Found at i:30867343 original size:184 final size:182
Alignment explanation
Indices: 30867002--30867369 Score: 441
Period size: 184 Copynumber: 2.0 Consensus size: 182
30866992 GTTGACTTAG
*
30867002 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGTTGCGGTAGCAAGATCAACAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGTTGCGGTAGCAAGATCAACAG
* ** * *
30867067 CACGCAGGGGGACCGGGCCAATCCCCAACTTATGCATTCTGCCTCTCCAGTTGGCTGAGCACCCA
66 CACACAGGGGGACCGGGCCAATCCCCAACTTACACATTCTGCCTCTCCAGTCGGCTAAGCACCCA
* * * * * *
30867132 CACGCTCGTTTTGAGGGTTGTCTTAGGCATACGGAGTTTATTCCATGTCTAA
131 CACGCTCATTTCGAGGGTAGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
* * * * * *
30867184 GCATACGGGGGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATAC-GGAGTTCATTCCCAATCTAAGATCAGACCAGATCGA-GGTTGCGGTAGCAAGATCAAC
* * *** * * *
30867248 AGCACACAGGGGGGATCGGGCCATTCCTTGACTTGCACATTCTGCCTCTGCGGTCGGCTAAGCAC
64 AGCACACA-GGGGGACCGGGCCAATCCCCAACTTACACATTCTGCCTCTCCAGTCGGCTAAGCAC
** *
30867313 CTGCACGCTCATTTCGTGGGTAGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
128 CCACACGCTCATTTCGAGGGTAGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
30867368 GC
1 GC
30867370 CCAGTCTGAC
Statistics
Matches: 154, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
182 28 0.18
183 34 0.22
184 92 0.60
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGTTGCGGTAGCAAGATCAACAG
CACACAGGGGGACCGGGCCAATCCCCAACTTACACATTCTGCCTCTCCAGTCGGCTAAGCACCCA
CACGCTCATTTCGAGGGTAGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
Found at i:30867914 original size:27 final size:26
Alignment explanation
Indices: 30867874--30867926 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30867864 TGACTTAGGC
30867874 CATATCGGAGTCATGCCCCAGTCTAAG
1 CATATCGGAGTCAT-CCCCAGTCTAAG
*
30867901 CATAT-GGAGTTCATTCCCAGTCTAAG
1 CATATCGGAG-TCATCCCCAGTCTAAG
30867927 ATCATACTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CATATCGGAGTCATCCCCAGTCTAAG
Found at i:30868747 original size:26 final size:26
Alignment explanation
Indices: 30868711--30868763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30868701 GTTGACTTAG
30868711 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30868737 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30868763 G
1 G
30868764 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30869090 original size:26 final size:26
Alignment explanation
Indices: 30869054--30869106 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30869044 GTTGACTTAG
30869054 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
30869080 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
30869106 G
1 G
30869107 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:30869188 original size:343 final size:343
Alignment explanation
Indices: 30868535--30869651 Score: 1176
Period size: 343 Copynumber: 3.3 Consensus size: 343
30868525 GTAATGCTCG
* * *
30868535 TTTCATGGGTTAG-CTTAGGCA-AAGGGAGTTCATTCCAAGTCTAAGCCCCAACCAGACCGAGGG
1 TTTCGTGGGTT-GCCTTAGGCATAA-GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * *
30868598 TTGTGGTAGCAGGACCGGCAGCACACAACGGAGGGA-CTGAGCTAATCC-CGGCTTACGCATTAT
64 TTGTGGTAGCGGGACCGGCAGCACACAGC-GAGGGATC-GAGCTAATCCTCGGCTTGCGCATTAT
* *
30868661 GCCTCTCCGATC-AGCTGAGCACCCACAAGCTC-TTTTGTGGGTTGACTTAGGCATACGGAGTTC
127 GCCTCTCCGATCGA-CTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
30868724 ATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAT
191 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGAC
* * * * *
30868789 AGCAAGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCTGGCTTACGTATTCTGCCTCTCC-G
256 AGCAAGATCGACAGCACGCAGGGGGAACCAAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAG
* *
30868853 ATCGGCTGAGCGCCCGCACGCCCA
321 -CCGACTGAGCGCCCGCACGCCCA
* * *
30868877 TTTTGTTGGTTGCCTTAGGCATAAGGTGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
1 TTTCGTGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * *
30868942 GTGGTAGTGGGACCGGCAGCACATAGCGAGGGATCGGGC-AGATCCTCGGCTTGCACATTATGCC
66 GTGGTAGCGGGACCGGCAGCACACAGCGAGGGATCGAGCTA-ATCCTCGGCTTGCGCATTATGCC
*
30869006 TCTCCGGTCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
130 TCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
* *
30869071 CCAGTCTAAGCATCCGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACTGAGGGTTGTAG-CAG
195 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTG-AGACAG
* * **
30869134 CAGGATCGACAGCACGCAGGGGGAACCAAGCTGAT-CCTCGACTTGTGCATTCTGCCTCTCCAGC
258 CAAGATCGACAGCACGCAGGGGGAACCAAGCCGATCCCT-GACTTACGCATTCTGCCTCTCCAGC
* *
30869198 CGACTGAGTGCCCGTACGCCCA
322 CGACTGAGCGCCCGCACGCCCA
* * * * *
30869220 TTTCGTGGGTTGGCTTAGGCAT-AGAAGTTCATTCCATGTCTAAGCCCAAGTCGGACCGAGGGTT
1 TTTCGTGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * ** *
30869284 GTGGGCAGCGGGGACCGGTAGCATGCAGCGGGGGATCGAGCTAATCCAT-GGCTTGCGCATTATG
66 GT-GGTAGC-GGGACCGGCAGCACACAGCGAGGGATCGAGCTAATCC-TCGGCTTGCGCATTATG
* * * ** * *
30869348 CCTTTTTCGACCGGTTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
128 CC-TCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * ** * * *
30869413 TCCCCAATCTAAGGCAAAACGGAGTTCATTCCCAGTCTAAGATTGGATCGGA-CTAAGGTT-ACG
192 TCCCCAGTCTAA-GC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGA-G
* * * * * * * * * *
30869476 ACAACAAGATCGGCAGCACG-TGGGGGGATCGACCCGTTCCCTGGCTTACGCATTCTGCCTTTCC
254 ACAGCAAGATCGACAGCACGCAGGGGGAACCAAGCCGATCCCTGACTTACGCATTCTGCCTCTCC
* * * * **
30869540 -GACCGTCTCAGCACCCTCACGACCGG
319 AG-CCGACTGAGCGCCCGCACG-CCCA
* * * *
30869566 TTTCGT-GGTTGGCTTAGGCATAGGGGAGTTTCATTCCATGTCTAAG-CCCAGCCGGATCGA-GG
1 TTTCGTGGGTTGCCTTAGGCATA-AGGAG-TTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * *
30869628 TTGTGGCAGTGGGATCGGCAGCAC
64 TTGTGGTAGCGGGACCGGCAGCAC
30869652 GCAGAGGGGG
Statistics
Matches: 650, Mismatches: 98, Indels: 52
0.81 0.12 0.06
Matches are distributed among these distances:
340 1 0.00
341 14 0.02
342 162 0.25
343 181 0.28
344 60 0.09
345 130 0.20
346 40 0.06
347 44 0.07
348 18 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (343 bp):
TTTCGTGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGTAGCGGGACCGGCAGCACACAGCGAGGGATCGAGCTAATCCTCGGCTTGCGCATTATGCCT
CTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGACAGCAA
GATCGACAGCACGCAGGGGGAACCAAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAGCCGAC
TGAGCGCCCGCACGCCCA
Found at i:30871186 original size:158 final size:161
Alignment explanation
Indices: 30870725--30871186 Score: 485
Period size: 158 Copynumber: 2.9 Consensus size: 161
30870715 CGGACTGGAT
* * * * * * * * * *
30870725 CGAGGGTTACGGTAGTAGGATCGGCAACACACAG-GGCAGACCAGACCGATCCCCAGA-TTACGC
1 CGAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGAGACCGGGCCGATCCCC-GACTTTCGC
* * * * * *
30870788 ATTCTGCCACTTCGACCGGCTGAACGCCCGCTCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
65 ATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
*
30870853 GTTCATTCCATGTCT-A-ATCCCCAATCGGAC
130 GTTCATTCCATGTCTAAGATCCACAATCGGAC
* * *
30870883 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTTCGCA
1 CGAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGACTTTCGCA
* * * * * * * * *
30870948 TTATGCCTTTCTGGCCGGCTCAGTG-CCGCACGCTCATTTCGTTGGTTGACTTAGGCATACGGAG
66 TTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* *
30871012 TTCATT-CTTCGTCTAAGAT-CAGAA-CGGAC
131 TTCATTCCAT-GTCTAAGATCCACAATCGGAC
* * * * * *
30871041 CGAGGGTTATGGTAGCAGGATCGACAGCATGTAG-GGGAGATCGGGTCGATCCCCGGCTTGT-GC
1 CGAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGACTT-TCGC
*
30871104 ATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
65 ATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
30871169 GTTCATTCCATGTCTAAG
130 GTTCATTCCATGTCTAAG
30871187 CATACGGAGT
Statistics
Matches: 245, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 43 0.18
158 157 0.64
159 43 0.18
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (161 bp):
CGAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGACTTTCGCA
TTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGATCCACAATCGGAC
Found at i:30871238 original size:26 final size:26
Alignment explanation
Indices: 30871160--30871227 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
30871150 GTTGGCTTAG
30871160 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30871186 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
30871212 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
30871228 GTCAGTCTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:30874077 original size:26 final size:27
Alignment explanation
Indices: 30874041--30874094 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
30874031 TCCGTCTGAT
30874041 CTTAGACTGGGAATGAACTCC-ATATG
1 CTTAGACTGGGAATGAACTCCGATATG
*
30874067 CTTAGACTGGGGATGAACTCCGATATG
1 CTTAGACTGGGAATGAACTCCGATATG
30874094 C
1 C
30874095 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGATATG
Found at i:30874794 original size:26 final size:26
Alignment explanation
Indices: 30874756--30874808 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
30874746 GGCTCAAACT
*
30874756 CTTAGACTGGGAAT-AAGCTTCGTATG
1 CTTAGACTGGGAATGAA-CTCCGTATG
30874782 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30874808 C
1 C
30874809 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30875125 original size:157 final size:159
Alignment explanation
Indices: 30874781--30875125 Score: 353
Period size: 160 Copynumber: 2.2 Consensus size: 159
30874771 AGCTTCGTAT
* *
30874781 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCAATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAG
* *
30874846 CCGACCAAAGAGGCAGAATACGCAAGTCCGGAGATCAACCCGATCCCCCTCTGCATGCTGCTGGT
65 CCGACCAAAGACGCAGAATACGCAAGTCCGGAGATCAACCCGATCCCCCTCTGCATGCTGCTGAT
* * *
30874911 CTCGCTACCATAACCCTCGGTCTGGCTAGG
130 CTCACTACCATAACCCTCGATCTGGCTAGA
* * * * *
30874941 GCTTAGAATTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAG-ACTGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAG
* ** * * * ** * *
30875006 TCGGTCGAAGACGCAGAATGCAG-AAG--CTGAGGATCGGCCCGATCGCCC-CTGTATG-TGCTG
65 CCGACCAAAGACGCAGAATAC-GCAAGTCCGGA-GATCAACCCGATCCCCCTCTGCATGCTGCTG
* *
30875066 ATC-CTACTACCGTAACCCTCGATCTAGTCT-GA
128 ATCTC-ACTACCATAACCCTCGATCT-GGCTAGA
*
30875098 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
30875126 TTAGACTAGG
Statistics
Matches: 152, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
156 3 0.02
157 47 0.31
158 12 0.08
159 14 0.09
160 74 0.49
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAGC
CGACCAAAGACGCAGAATACGCAAGTCCGGAGATCAACCCGATCCCCCTCTGCATGCTGCTGATC
TCACTACCATAACCCTCGATCTGGCTAGA
Found at i:30875140 original size:26 final size:26
Alignment explanation
Indices: 30875099--30875151 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30875089 CTAGTCTGAT
*
30875099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30875125 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
30875151 C
1 C
30875152 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30875550 original size:159 final size:159
Alignment explanation
Indices: 30875343--30875638 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 159
30875333 GCCTAGACAC
* *
30875343 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCAGCCGGTCGGAG
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCAGCCAGTCGGAG
* ** * *
30875408 AGGTAGAATGCGCAAG-CTGGGGATC-GACCCGATCCCCCTCTTTGTGCTATCGATCCTGCTGCT
66 AGGCAGAATGCGCAAGTC-GGGGATCAG-CCCGATCCCCCTCTACGTGCTATCGATCCCGCTGCC
30875471 ACAACCCTCAGTTCGGTCCGATCTTAGACTG
129 ACAACCCTCAGTTCGGTCCGATCTTAGACTG
* * * ** *
30875502 GGAATAAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGTTGAGCCAGTCGGAG
1 GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCAGCCAGTCGGAG
* * * * * *
30875567 AGGCATAATGTGTAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCAC
66 AGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTATCGATCCCGCTGCCAC
30875632 AACCCTC
131 AACCCTC
30875639 GGTCCGACTG
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
159 114 0.98
160 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
GGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCAGCCAGTCGGAG
AGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTATCGATCCCGCTGCCAC
AACCCTCAGTTCGGTCCGATCTTAGACTG
Found at i:30875665 original size:159 final size:159
Alignment explanation
Indices: 30875337--30875696 Score: 368
Period size: 159 Copynumber: 2.3 Consensus size: 159
30875327 CCGTATGCCT
* * * *
30875337 AGACACGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCAGCCGG
1 AGACATGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGCACTCAGCCAG
* ** *
30875402 TCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTTTGTGCTATCGATCCTGC
66 TCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTACGTGCTATCGATCCCGC
* * * * *
30875467 TGCTACAACCCTCAGTTCGGTCCGATCTT
131 TGCCACAACCCTCAGTCCGCTCCGAGCTC
* * ** *
30875496 AGAC-TGGGAATAAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGTTGAGCCA
1 AGACAT-GGAATAAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGCACTCAGCCA
* * * * * *
30875560 GTCGGAGAGGCATAATGTGTAAG-TCGGGGATC-AGCCCGGTCCCCCTCTACGTGCTGTCGGTCC
65 GTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGA-CCCGATCCCCCTCTACGTGCTATCGATCC
* * *
30875623 CGCTGCCACAACCCTCGGTCCGACT-GGGGCTC
128 CGCTGCCACAACCCTCAGTCCG-CTCCGAGCTC
** * * *
30875655 AGACATGGAATTTACTCCCTATCCCTAAGCCAACCCATGAAA
1 AGACATGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAA
30875697 CAGGTGTGCG
Statistics
Matches: 163, Mismatches: 33, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
158 2 0.01
159 159 0.98
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
AGACATGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGCACTCAGCCAG
TCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTACGTGCTATCGATCCCGC
TGCCACAACCCTCAGTCCGCTCCGAGCTC
Found at i:30875846 original size:26 final size:26
Alignment explanation
Indices: 30875810--30875862 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30875800 CCGGTTTGAT
30875810 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
30875836 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30875862 C
1 C
30875863 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30876561 original size:25 final size:26
Alignment explanation
Indices: 30876533--30876584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30876523 GGCTCAAAAT
*
30876533 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
*
30876558 CTTAGACATTAAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
30876584 C
1 C
30876585 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:30876818 original size:159 final size:158
Alignment explanation
Indices: 30876569--30877056 Score: 554
Period size: 159 Copynumber: 3.1 Consensus size: 158
30876559 TTAGACATTA
* * *
30876569 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCAGGCGCTCAGTCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGACCGAAGAG
* * * *
30876634 GCAGAATACGCAAGTCGGGGATCGGCCCGGTCCCCCCCTGTGTGCTGTTGATCCTGCTGTCGTAA
65 GCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTATCGTAA
*
30876699 CCCTCGGTCCGATCTAATCTTAGACTGGG
130 CCCTCGATCCGATCTAATCTTAGACTGGG
* * * * * *
30876728 AATAAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCTGGCGCTAAGCCGACCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGACCGAAGAG
* * * * ** * * **
30876793 GCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGT-CTCGCTACCACA
65 GCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCCTGTGTGCTGTCGATCCT-GCTATCGTA
* * **
30876857 ACCCTCGATCTG-GCTAGGGCTTAGACAT-GG
129 ACCCTCGATCCGATCTA-ATCTTAGAC-TGGG
* * ** *
30876887 AATGAACTCCCTATGCCTAAGCCAACCCACCAAACG-GCGTGCGAGCGCTCAGCCGGTCAAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCAGCCGACCGAAGAG
* *
30876951 GCAGAATGCGTAAGTCGAGGATCGGCCCGGT-CCCCCCTGTGTGCCGTCGATCCTGCTATCGTAA
65 GCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTATCGTAA
*
30877015 CCCTCGATCCGATCTGATCTTAGACTGGG
130 CCCTCGATCCGATCTAATCTTAGACTGGG
*
30877044 AATGAACTTCGTA
1 AATGAACTCCGTA
30877057 CGCTTAGATT
Statistics
Matches: 263, Mismatches: 59, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 53 0.20
158 58 0.22
159 150 0.57
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGACCGAAGAGG
CAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTATCGTAAC
CCTCGATCCGATCTAATCTTAGACTGGG
Found at i:30877580 original size:156 final size:154
Alignment explanation
Indices: 30877231--30877730 Score: 508
Period size: 156 Copynumber: 3.2 Consensus size: 154
30877221 CTGGCTGGGG
* * *
30877231 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGCGCTCAG
* * * ** * * * *
30877295 CCTGTCAGAGAGGCAGAATATGCAAGCTGGGGATCGATCCAGTGCCCCTTTTCGTGCTGTCGATC
65 TC-GACCGAGAGGCAGAATGCGCAAG-TCGGGATCG-CCCGGT-CCCC-TTGCGTGCTGTCGATC
* *
30877360 CTGCTGCCAG-AACCCTCGGTC-CAGTCTGAT
125 CTGCTG-CTGTAACCCTCGGTCTGA-TCTGAT
*
30877390 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGCGCTCAGT
*
30877455 CGACCGAAGAGGCAGAATGCGCAAGTCGGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCCTGC
66 CGACCG-AGAGGCAGAATGCGCAAGTCGGGATC-GCCCGGTCCCCTTGCGTGCTGTCGATCCTGC
*
30877520 TGCTGTAACCCACGGTCTGATCTGAT
129 TGCTGTAACCCTCGGTCTGATCTGAT
** * * * *
30877546 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCTACGAAAC-AAGCGTACCGGCGTTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAA-CGTGCGGGCGCTCAG
* * * **
30877610 TCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCTCTTGCGTGCTACCGATCC
65 TCGACC-GAGAGGCAGAATGCGCAAGTC-GGGATC-GCCCGGTCCC-CTTGCGTGCTGTCGATCC
* * * *
30877675 TACT-ATCGTAACCCTCAGG-CTGGTCCGAT
126 TGCTGCT-GTAACCCTC-GGTCTGATCTGAT
*
30877704 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
30877731 TTAGACTGAG
Statistics
Matches: 294, Mismatches: 36, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
155 4 0.01
156 114 0.39
157 22 0.07
158 75 0.26
159 79 0.27
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (154 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTGCGGGCGCTCAGT
CGACCGAGAGGCAGAATGCGCAAGTCGGGATCGCCCGGTCCCCTTGCGTGCTGTCGATCCTGCTG
CTGTAACCCTCGGTCTGATCTGAT
Found at i:30877745 original size:26 final size:26
Alignment explanation
Indices: 30877704--30877756 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30877694 CTGGTCCGAT
30877704 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
30877730 CTTAGACTGAGG-ATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTTCGTATG
30877756 C
1 C
30877757 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30878351 original size:11 final size:11
Alignment explanation
Indices: 30878335--30878367 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
30878325 CGGTTAGGCT
30878335 CTCCGACGATG
1 CTCCGACGATG
*
30878346 CTCCGACAATG
1 CTCCGACGATG
30878357 CTCCGACGATG
1 CTCCGACGATG
30878368 GTGCCCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:30878475 original size:26 final size:26
Alignment explanation
Indices: 30878437--30878489 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30878427 GGCTCAAAAT
*
30878437 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30878463 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30878489 C
1 C
30878490 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30878974 original size:26 final size:26
Alignment explanation
Indices: 30878938--30878990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30878928 CCGGTTTGAT
30878938 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
30878964 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30878990 C
1 C
30878991 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30879277 original size:355 final size:350
Alignment explanation
Indices: 30878753--30880462 Score: 1483
Period size: 355 Copynumber: 5.0 Consensus size: 350
30878743 ACCGGTCCTA
* ** *
30878753 CTGCCACAACCCTCAGTTTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * *
30878818 CATGAAACGGGCGTGCGGGCGCTCAATCG-GTCGAAGAGGCAGAAT-CTGCAAGCCGGGGATCAG
66 CATGAAACGGGCGTGCAGGCGCTCAGCCGACT-GGAGAGGCAGAATGC-GCAAGCCGGGGATCAG
* * * * * * **
30878881 CCCGGTCCCCCCTACGTGCTG-CTGATCCTGTTATCGTAACCCTCGATCCGGTTTGATCTTAGAC
129 CCCGATCCCCCCTGCGTGCTGTC-GATCCTGCTGTCGCAACCCTC-ATCCGATCCGATCTTAGAC
*
30878945 TGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
192 TGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
30879010 GAGCGTGCAAGTGCTCAGCCGACCGGAGAGGCATAATGCGTAAGCCTGGGATCAGCCCGGTCCCC
257 GAGCGTGCGAGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCC
30879075 CTCTGCGTGCTGTCGATCCCATTGTCAGTCTTG
322 CTCTGCGTGCTGTCGATCCCA--GTC-GTC-TG
* * *
30879108 CTGCAACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * **
30879173 CATGAAACGAGCATACGGGTGCTCAGCCGACTGGAAAGGTAGAATGCGCAAGCCGGGGATCAGTT
66 CATGAAACGGGCGTGCAGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCC
* * * * *
30879238 CGGTCCCCCCTGCGTGCTGTAGATCCTGCTG-CTGTAACCCTCGATCCAATCTGATCTTAGACTG
131 CGATCCCCCCTGCGTGCTGTCGATCCTGCTGTC-GCAACCCTC-ATCCGATCCGATCTTAGACTG
*
30879302 GCAATGAACTTCGTA----T-G-C-----AT--A------A-G--T---T-AACCCACGAAACGA
194 GGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * * * * * *
30879341 GCGTTCGGGCGTTGAGCTGGCCGAAGAGGTATAATGCACAAGTCGGGGATCGGCCCGGTCCCCCT
259 GCGTGCGAGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCT
* *
30879406 CTGCGATACTATCGAT--C---C--C-G
324 CTGCG-TGCTGTCGATCCCAGTCGTCTG
* * * * **
30879426 CTGCCATAACCTTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATG
1 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * *
30879491 CATGAAATGGGTGTACAGGCGCTCAGCC-AGTTGGAGGGGCAGAATGCACAAGCCGGGGATCGGC
66 CATGAAACGGGCGTGCAGGCGCTCAGCCGA-CTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGC
* * * * * *
30879555 CCTATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGGTCCGATCTTAGACTG
130 CCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCA-TCCGATCCGATCTTAGACTG
* * * * *
30879620 GGAATGAACTCCGTATGCTTATACTAGGGATGAACTCCGTACGCATAAGTCAACCCACGAAACGA
194 GGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
30879685 GCGTGCGA-TCACTAAGCCGGTCGAAGAGGCATAATGCGCAAGTCAGAGATCAGCCCGATCCCCC
259 GCGTGCGAGT-GCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCC
30879749 TCTGCGTGC--T-G-T--CAGTC-TC-G
323 TCTGCGTGCTGTCGATCCCAGTCGTCTG
* *
30879769 CTACCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * * * *
30879834 CACGAAACGGGCGTGCAGACGCTCAGCCGACCGGAGAGGTACAATGTGTAAGCTGGGGACCTGCC
66 CATGAAACGGGCGTGCAGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCC
* * * *
30879899 CAAT-CCCCCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCCGATACGATATTAGACTGG
131 CGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCA-TCCGATCCGATCTTAGACTGG
** * * *
30879963 GAATGAACTTTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCACAAAATGAG
195 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * ** * * * *
30880028 CTTGCGGGTGCTCAGTCGGCCGGAGAGGCATAATAAGTAAGCCGGGGATCAGCACGGTCCCCCTT
260 CGTGCGAGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTC
*
30880093 TGCGTGCTGTCGATCCC-GCTGCCGGTCCTA
325 TGCGTGCTGTCGATCCCAG-T--C-GT-CTG
* * * * * *
30880123 CTGCCATAATCCTCGATCCGGCTGCGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACC
1 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * * * * * *
30880188 CACGAAACAAGCGTGCCGGTGCTCAGTCG-GTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGC
66 CATGAAACGGGCGTGCAGGCGCTCAGCCGACT-GGAGAGGCAGAATGCGCAAGCCGGGGATCAGC
* * * * * *
30880252 CCGATCCCCCCTACATGCTGTCGATCCTACTGTCGCAACCCTCGGTCCAATCTGATCTTAGACTG
130 CCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTC-ATCCGATCCGATCTTAGACTG
* * * * *
30880317 AGAATGAACTTCGTATGCTTAGA-TGTGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACG
194 GGAATGAACTTCGTATGCTTAGACTG-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * ** * * ** *
30880381 AGCGTGAGGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCC
258 AGCGTGCGAGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCC
30880446 -CTGCGTGCTGTCGATCC
323 TCTGCGTGCTGTCGATCC
30880463 TACTGTCACA
Statistics
Matches: 1090, Mismatches: 207, Indels: 117
0.77 0.15 0.08
Matches are distributed among these distances:
317 2 0.00
318 169 0.16
319 1 0.00
320 1 0.00
322 1 0.00
323 1 0.00
324 1 0.00
328 1 0.00
329 71 0.07
330 9 0.01
331 1 0.00
333 1 0.00
335 1 0.00
336 1 0.00
337 1 0.00
338 1 0.00
339 2 0.00
340 2 0.00
341 1 0.00
342 163 0.15
343 115 0.11
344 73 0.07
345 1 0.00
346 1 0.00
347 1 0.00
348 2 0.00
349 1 0.00
350 2 0.00
351 1 0.00
352 1 0.00
353 1 0.00
354 129 0.12
355 329 0.30
356 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (350 bp):
CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAACGGGCGTGCAGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCC
CGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCATCCGATCCGATCTTAGACTGGG
AATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGAGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCT
GCGTGCTGTCGATCCCAGTCGTCTG
Found at i:30879640 original size:26 final size:26
Alignment explanation
Indices: 30879611--30879660 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
30879601 CTGGTCCGAT
30879611 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
30879637 CTTATACTAGGGATGAACTCCGTA
1 CTTAGACTAGGGATGAACTCCGTA
30879661 CGCATAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:30880004 original size:26 final size:26
Alignment explanation
Indices: 30879954--30880005 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
30879944 CGATACGATA
**
30879954 TTAGACTGGGAATGAACTTTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
30879980 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
30880006 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:30880458 original size:184 final size:184
Alignment explanation
Indices: 30880149--30880517 Score: 522
Period size: 184 Copynumber: 2.0 Consensus size: 184
30880139 TCCGGCTGCG
* * **
30880149 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACAAGCGTGCCGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCGTGACGGCACTCAG
* **
30880214 TCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCC
* * *
30880279 TACTGTCGCAACCCTCGGTCCAATCTGATCTTAGACTGAGAATGAACTTCGTAT
131 TACTGTCACAACCCTAGGTCCAATCCGATCTTAGACTGAGAATGAACTTCGTAT
** * * * *
30880333 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGAGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCGTGACGGCACTCAG
* * *
30880398 TCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCC
** * * *
30880463 TACTGTCACAACCCTAGGTCCGGTCCGATCTTAGGCTGGGAATGATCTTCGTAT
131 TACTGTCACAACCCTAGGTCCAATCCGATCTTAGACTGAGAATGAACTTCGTAT
30880517 G
1 G
30880518 TCTAAGTCAA
Statistics
Matches: 161, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
184 161 1.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACAAGCGTGACGGCACTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCC
TACTGTCACAACCCTAGGTCCAATCCGATCTTAGACTGAGAATGAACTTCGTAT
Found at i:30881164 original size:355 final size:356
Alignment explanation
Indices: 30880624--30881280 Score: 955
Period size: 355 Copynumber: 1.8 Consensus size: 356
30880614 ACCGATCCCA
* * * *
30880624 CTGCCACAACCCTTGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACC
1 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * *
30880689 CACGAAACGGGCGTGCAGGGCGCTCAGCAGACTGGAGAGGTAGAATACGCAAGCCGAGGATCGAC
66 CACGAAACGAGCGTACAGGGCGCTCAGCAGACTGGAGACGTAGAATACGCAAGCCGAGGATCGAC
* * * *
30880754 TCGATCCCCCTGCGTGCTGCCGATCCTGCTGGCGTAACCCTCAGTCCGATCCGATCTTAGACTGG
131 CCGATCCCCCTGCCTGCTGCCCATCCTGCTGGCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
* ** * *
30880819 AAATGAACTCCGTATGCTTAGATTGGGGATGAACTTTGTATGCCTACGTCAACCCATGAAACGAG
196 AAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
** *
30880884 CATGCGGGCGCTCA-ACCGACTGGAGAGGCATAATGCGCAAGCCAGGGATTAGCCCGGTCCCCCT
261 CATGCGGGCGCTCAGACCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGGTCCCCCT
30880948 CTGCATACTGTCGATCCCGCTACCGGTCCTG
326 CTGCATACTGTCGATCCCGCTACCGGTCCTG
*
30880979 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
30881044 CACGAAATGAGCGTAC-GGGCGCTCAGCCG-GTCGGAGACGTAGAATGCGCAAGCCGGGGATC-A
66 CACGAAACGAGCGTACAGGGCGCTCAGCAGACT-GGAGACGTAGAATACGCAAGCCGAGGATCGA
** *
30881106 GCCCGATCCCCCCTGCCTGCTGCCCATCCTGCT-GCTGCAACCCTTGGTCCGGTCCGATCTTAGA
130 -CCCGAT-CCCCCTGCCTGCTGCCCATCCTGCTGGC-GCAACCCTCAGTCCGATCCGATCTTAGA
*
30881170 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
192 CTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
30881235 CGAGCGTGCGGGCGCTCAGGCCGACCAGAGAGGCAGGATGCGCAAG
257 CGAGCATGCGGGCGCTCAGACCGACCAGAGAGGCAGAATGCGCAAG
30881281 TCGGGGATCG
Statistics
Matches: 265, Mismatches: 32, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
353 2 0.01
354 45 0.17
355 196 0.74
356 22 0.08
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (356 bp):
CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGTACAGGGCGCTCAGCAGACTGGAGACGTAGAATACGCAAGCCGAGGATCGAC
CCGATCCCCCTGCCTGCTGCCCATCCTGCTGGCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
AAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CATGCGGGCGCTCAGACCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGGTCCCCCT
CTGCATACTGTCGATCCCGCTACCGGTCCTG
Found at i:30881193 original size:26 final size:26
Alignment explanation
Indices: 30881164--30881216 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30881154 CCGGTCCGAT
30881164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30881190 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30881216 C
1 C
30881217 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30887982 original size:26 final size:26
Alignment explanation
Indices: 30887953--30888005 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30887943 CCGATCCGAT
30887953 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
* * *
30887979 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
30888005 C
1 C
30888006 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Done.