Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 335 of 402
Found at i:30888360 original size:26 final size:26
Alignment explanation
Indices: 30888331--30888383 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30888321 CCGGTCTGAT
*
30888331 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
30888357 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30888383 C
1 C
30888384 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30888711 original size:159 final size:158
Alignment explanation
Indices: 30888356--30888858 Score: 394
Period size: 158 Copynumber: 3.2 Consensus size: 158
30888346 AACTCTGTAT
* *
30888356 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* * * *
30888421 CCGACCGGAGAGGCAGAATGTGCAAGCTAGGGACCGACCAAGTCCCCCCTGTGCGCTGTTGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCGAGGGACCGACCAAGTCCCCCCTGTGCGCTGTAGATCC
* * * *
30888486 TGCTGTCGCAACCCTCGATCCAGTCTGA
131 CGCTGCCACAACCCTCGATCCAGACTGA
* * * *
30888514 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * * * *
30888578 GCCGATCAGAGAGGCATAATGCGTAGGTCGA-GGATCGACTCGA-TCCCCCTCTGTGTGCTGCTA
65 ACCGACCAGAGAGGCAGAATGCGCAAG-CGAGGGACCGAC-CAAGTCCCCC-CTGTGCGCTG-TA
* * * *
30888641 G-TCCCGCTGCCATAACCTTCGGT-CTGACTGA
126 GATCCCGCTGCCACAACCCTCGATCCAGACTGA
* * * *
30888672 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TAGGCGTGCGGGCGCTC
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCAGGCGCTC
* ** * * * * * * * * * * *
30888736 AGCCGGTCGGACAGGCAGAATGCGTAAGCCAGGGATCGGTCC-GGTCCCCCATGGGTGCTGTCGA
64 AACCGACCAGAGAGGCAGAATGCGCAAGCGAGGGA-CCGACCAAGTCCCCCCTGTGCGCTGTAGA
* ** * *
30888800 TCCTGCTATCGCAACCCTCGATCC-GATCCGA
128 TCCCGCTGCCACAACCCTCGATCCAGA-CTGA
* *
30888831 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
30888859 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 58, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.01
158 146 0.54
159 117 0.43
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
CCGACCAGAGAGGCAGAATGCGCAAGCGAGGGACCGACCAAGTCCCCCCTGTGCGCTGTAGATCC
CGCTGCCACAACCCTCGATCCAGACTGA
Found at i:30888873 original size:26 final size:26
Alignment explanation
Indices: 30888832--30888884 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30888822 CCGATCCGAT
*
30888832 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
30888858 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30888884 C
1 C
30888885 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30889592 original size:26 final size:26
Alignment explanation
Indices: 30889554--30889606 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30889544 GGCTCAAAAT
30889554 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
30889580 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
30889606 C
1 C
30889607 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30889942 original size:159 final size:158
Alignment explanation
Indices: 30889579--30890011 Score: 523
Period size: 159 Copynumber: 2.7 Consensus size: 158
30889569 AACTTCGTAT
* * * *
30889579 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
30889644 CCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
** *
30889709 TGCTATCATAACCCTCAGTTCGGTCTGA
131 CACTACCATAACCCTCAGTTCGGTCTGA
* * * * * *
30889737 TCTTAGAC-TGGGAATAAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
30889801 GCCAGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTG-CTGG
65 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTC-GA
* * *
30889865 TCCCACTACCATAGCCCTTAGTTCGG-CTGGG
128 TCCCACTACCATAACCCTCAGTTCGGTCT-GA
* * *
30889896 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
30889961 CCGGCCGGAGAGGCAGAAA-GCGTAAGTCGAGGATCGGCCCGGTCCCTCCTG
66 CCGGCCGGAGAGGCA-AAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTG
30890012 TATACTACCA
Statistics
Matches: 230, Mismatches: 39, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.00
158 102 0.44
159 124 0.54
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
CACTACCATAACCCTCAGTTCGGTCTGA
Found at i:30890091 original size:26 final size:26
Alignment explanation
Indices: 30890055--30890107 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30890045 CTGGTCTGAT
30890055 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30890081 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30890107 C
1 C
30890108 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30890460 original size:26 final size:26
Alignment explanation
Indices: 30890422--30890474 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30890412 CTGGTCTAAT
*
30890422 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30890448 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
30890474 C
1 C
30890475 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30891346 original size:26 final size:26
Alignment explanation
Indices: 30891317--30891369 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30891307 CTGGTCCGAT
* *
30891317 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30891343 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30891369 C
1 C
30891370 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30891830 original size:699 final size:697
Alignment explanation
Indices: 30890750--30892805 Score: 1729
Period size: 699 Copynumber: 3.0 Consensus size: 697
30890740 GGCTCGACCT
* ** * * *
30890750 GATCCCCCCTGTGTGCTGTCGATCTTGCTGCTGGTCCTGTTTCCATAACCCTCGGTCCGATCCAA
1 GATCCCCCCTATGTGCTACCGATCTTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGATCCAA
* * * * *
30890815 TCTTAAACTGGGAATGAACTTCGTATGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAATC
66 TCTTAAACTGGGAATGAACTTCGTATGCTTACACATGGAATAAAATCCGTATGCCTAAGCCAACC
* **
30890880 CATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCGTAAGCTGGGGACCGGCT
131 CATGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAAAATGCACAAGCTGGGGACCGGCT
* * * ** * * *
30890945 CGATCCCCCCTCCGTGTTGTCGATCCTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTAG
196 CGATCCCCCCTCCATGTTATCGATCCTACTACCACAACCCTCGGTCTGGTCTAATCTGAGACTAG
*
30891010 GAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGTTGACCCGATCGGAGA
261 GAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGACCCGATCGGAGA
** * * ** *
30891075 GTTATAATGCGCATGTCGAGGATCGACTTGATCCCCCTCTGCGTACTGCTGGTCCCGCTGCCACA
326 GGCATAATGCGCAAGCCGAGGATCGACCCGATCCCACTCTGCGTACTGCTGGTCCCGCTGCCACA
* *
30891140 ACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGTAAC
391 ACCATCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAAC
* ** * *
30891205 GGACGTGCGGGTGCTCAACCGGCCGAA-AGGGCAGAATGCACAAGCTAG-GGATCGGCCTGGTCC
456 GGACGTGCAGGCACTCAACCGGCCGAAGA-GGCAGAATGCACAAG-TAGAGGATCGACCGGGTCC
* * * *
30891268 CCCCTGCGTGCTGTCGATCCTGCTGCCATAACCCTT-GGT-CTGGTCCGATCTTAGATTGGGAAT
519 CACCTACGTGCTGTCGATCCTGCTACCATAA-CCTTCGGTAC-GGTCCGATCTTAGACTGGGAAT
30891331 GAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACTCAAGAAACAAGCGTA
582 GAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACTCAAGAAACAAGCGTA
30891396 CGGACGCTCAGCCGATCGGAGAGGCAACATCTGCAAGCCGAGGATCCCCCC
647 CGGACGCTCAGCCGATCGGAGAGGCAACATCTGCAAGCCGAGGATCCCCCC
* **
30891447 GATCCCCCCTTATGTGCTACCGATCTTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGTCTG
1 GATCCCCCC-TATGTGCTACCGATCTTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGATCCA
*
30891512 ATCTTAGACTGGGAATGAAC-TCTGTATGCTTACACATGGAATAAAATCCGTATGCCTAAGCCAA
65 ATCTTAAACTGGGAATGAACTTC-GTATGCTTACACATGGAATAAAATCCGTATGCCTAAGCCAA
* * * * * ** *
30891576 CCCATGAAATGAGTGTGTGGGTGCTTAGCCGGTCAAAGAGGCAGAATGCACAAG-TCGGGGACC-
129 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAAAATGCACAAGCT-GGGGACCG
* * * *
30891639 GATCTGATCCCTCCCTGCATGTTATCGATCCTACTACCATAACCCTCGGTCTGAT-TCAATCTGA
193 GCTC-GATCCC-CCCTCCATGTTATCGATCCTACTACCACAACCCTCGGTCTGGTCT-AATCTGA
* * * * * *
30891703 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGTGCTGAGCCGAT
255 GACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGACCCGAT
* * *
30891768 CGGAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGGTCCCACTCTGCGTGCTGCTGGTCCCGC
320 CGGAGAGGCATAATGCGCAAGCCGAGGATCGA-CCCGATCCCACTCTGCGTACTGCTGGTCCCGC
** * * *
30891832 TGCCACAACCATCGGTCTGACTTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
384 TGCCACAACCATCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCC
* * * * * * * ** * *
30891897 ATGAAACGGGCGTGCAGGCATTCAGCCGGTCGGAGAGGTAGAATGCGTAAGTCGAGGATCGATCG
449 ACGAAACGGACGTGCAGGCACTCAACCGGCCGAAGAGGCAGAATGCACAAGTAGAGGATCGACCG
* * * * * * *
30891962 GGTCTCACTTATGTGCTGTCGATCCTGCTATCGTAACCTTCGGTACGGTCTGATTTTAGACTGGG
514 GGTCCCACCTACGTGCTGTCGATCCTGCTACCATAACCTTCGGTACGGTCCGATCTTAGACTGGG
* * * * *
30892027 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAAC-CACGAAACGAT
579 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTC-AACTCAAGAAACAAG
* * *
30892091 CGTGC-GAGGGCTCAGACAGCCGGAGAGGTCGACCGGAGAGGCATA-ATGC-GCAAGTC-AGGGA
643 CGTACGGA-CGCT----CAGCC---GA--T----CGGAGAGGCA-ACAT-CTGCAAGCCGA-GGA
** *
30892152 TCAGCTC
691 TCCCCCC
* * * ** ** *
30892159 GGT-CCCTCTATACGTGCTGCCGATCCCGCTG-TCGGTCCTATTGCAACAACCCTCGGTCCG---
1 GATCCCCCCTAT--GTGCTACCGATCTTGCTGCT-GGTCCTGCTGCCACAACCCTCGGTCCGATC
* * *
30892219 ---GC-T--A---GG---G--C-T--TA-G-----ACATGGAATGAACTCCGTATGCCTAAGCCA
63 CAATCTTAAACTGGGAATGAACTTCGTATGCTTACACATGGAATAAAATCCGTATGCCTAAGCCA
* * * * * * * *
30892261 ACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAA-AGGCACAATGCATAAGCCGGGGACT
128 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACC-AAAGAGGCAAAATGCACAAGCTGGGGACC
* * * **** * * ** * * * *
30892325 GACCCGATCCCTCCTAGGGGCTATCGATCCTGCTACCGTAACCCTCGGTCCGATCCAATCTTAGA
192 GGCTCGATCCCCCCTCCATGTTATCGATCCTACTACCACAACCCTCGGTCTGGTCTAATCTGAGA
* * * ** * * * * * *
30892390 CTAGAAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGACGTTGAGCCAACCA
257 CTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGACCCGATCG
* * ** ** * * * *
30892455 AAGAGGCATAATGCGCAAGCCGAGGATCGGCTTGATCCCTTTCAGTGTACTGTTGGTCCCGTTGC
322 GAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCACTCTGCGTACTGCTGGTCCCGCTGC
* ** * * * *
30892520 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACA
387 CACAACCATCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACG
* ** * * * * ** * * *
30892585 AAATGGGTGTACGGGCGCTCAGCCTACCGGAGAAGCAGAATGCGCAAGTTAG-GGATCGACTC-G
452 AAACGGACGTGCAGGCACTCAACCGGCCGAAGAGGCAGAATGCACAAG-TAGAGGATCGAC-CGG
* * * * ** * *
30892648 GTCCCCCCTGCGTGCTGTCGATCCTACTACCATAACCCTCGGTTTGGTCTGATCTTAGATTGGGA
515 GTCCCACCTACGTGCTGTCGATCCTGCTACCATAACCTTCGGTACGGTCCGATCTTAGACTGGGA
* ** * * *
30892713 ATGAACTCCGTATGCTTAGACTGGGGATAAACTCTGTACGCCTAAGTCAACCCATA-AAATAAGC
580 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACTCA-AGAAACAAGC
* * * * *
30892777 GTGCGGACTCTCAGCTGACCAGAGAGGCA
644 GTACGGACGCTCAGCCGATCGGAGAGGCA
30892806 GAATGCGTAA
Statistics
Matches: 1105, Mismatches: 212, Indels: 109
0.77 0.15 0.08
Matches are distributed among these distances:
672 9 0.01
678 2 0.00
681 4 0.00
684 3 0.00
685 357 0.32
686 84 0.08
687 3 0.00
691 1 0.00
692 2 0.00
695 2 0.00
697 16 0.01
698 167 0.15
699 360 0.33
700 7 0.01
703 6 0.01
705 1 0.00
706 3 0.00
708 1 0.00
710 3 0.00
711 6 0.01
712 66 0.06
713 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (697 bp):
GATCCCCCCTATGTGCTACCGATCTTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGATCCAA
TCTTAAACTGGGAATGAACTTCGTATGCTTACACATGGAATAAAATCCGTATGCCTAAGCCAACC
CATGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAAAATGCACAAGCTGGGGACCGGCT
CGATCCCCCCTCCATGTTATCGATCCTACTACCACAACCCTCGGTCTGGTCTAATCTGAGACTAG
GAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGACCCGATCGGAGA
GGCATAATGCGCAAGCCGAGGATCGACCCGATCCCACTCTGCGTACTGCTGGTCCCGCTGCCACA
ACCATCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAAC
GGACGTGCAGGCACTCAACCGGCCGAAGAGGCAGAATGCACAAGTAGAGGATCGACCGGGTCCCA
CCTACGTGCTGTCGATCCTGCTACCATAACCTTCGGTACGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACTCAAGAAACAAGCGTACGGA
CGCTCAGCCGATCGGAGAGGCAACATCTGCAAGCCGAGGATCCCCCC
Found at i:30892046 original size:26 final size:26
Alignment explanation
Indices: 30892017--30892068 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30892007 CGGTCTGATT
*
30892017 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
30892043 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
30892069 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:30895717 original size:27 final size:26
Alignment explanation
Indices: 30895675--30895728 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
30895665 CTGGTCTGAT
30895675 CTTAGACTGGGAATGAACTCCTGTATG
1 CTTAGACTGGGAATGAACTCC-GTATG
*
30895702 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30895728 C
1 C
30895729 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30896777 original size:26 final size:26
Alignment explanation
Indices: 30896736--30896807 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
30896726 TCGGTTTGAT
* *
30896736 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGTATGAACTCTATATG
30896762 CTTAGACTAGGTATGAACTCTATATG
1 CTTAGACTAGGTATGAACTCTATATG
30896788 CTTAGACTAGGTATGAACTC
1 CTTAGACTAGGTATGAACTC
30896808 GTATGCCTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGTATGAACTCTATATG
Found at i:30896945 original size:15 final size:12
Alignment explanation
Indices: 30896913--30896945 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
30896903 ATACTGTCGA
30896913 TCCTGCTGCTGG
1 TCCTGCTGCTGG
30896925 TCCTGCTGCTGG
1 TCCTGCTGCTGG
*
30896937 TCCTACTGC
1 TCCTGCTGC
30896946 CACCAACCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.03, C:0.36, G:0.27, T:0.33
Consensus pattern (12 bp):
TCCTGCTGCTGG
Found at i:30897842 original size:26 final size:26
Alignment explanation
Indices: 30897813--30897865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30897803 CCGATTTAAT
30897813 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
30897839 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30897865 C
1 C
30897866 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30898586 original size:26 final size:26
Alignment explanation
Indices: 30898548--30898598 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30898538 TTGGTTCGAT
30898548 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
30898574 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
30898599 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:30898799 original size:149 final size:149
Alignment explanation
Indices: 30898529--30898814 Score: 509
Period size: 149 Copynumber: 1.9 Consensus size: 149
30898519 TGCTATCGCA
30898529 ATGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
1 ATGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
* *
30898594 CGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTGAGCCGATCGGAGAGGAATAATGC
66 CGTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCACTGAGCCGACCGGAGAGGAATAATGC
30898659 GCAAGCCAGGGATCGAGCG
131 GCAAGCCAGGGATCGAGCG
*
30898678 ATGCTCGGTTTGGTTCGATCTTAGATTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
1 ATGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
* * * *
30898743 TGTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCACTGAGCCGGCCGGAGAGGAATAATGC
66 CGTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCACTGAGCCGACCGGAGAGGAATAATGC
30898808 GCAAGCC
131 GCAAGCC
30898815 GGGGTTCAGC
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
149 130 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (149 bp):
ATGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
CGTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCACTGAGCCGACCGGAGAGGAATAATGC
GCAAGCCAGGGATCGAGCG
Found at i:30900661 original size:26 final size:26
Alignment explanation
Indices: 30900631--30900683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30900621 CCGATCCAAT
*
30900631 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30900657 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30900683 C
1 C
30900684 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30901531 original size:26 final size:26
Alignment explanation
Indices: 30901480--30901532 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30901470 ACGATTTGAT
* *
30901480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
30901506 CTTAAACTGGGGATGAACTTCATATG
1 CTTAAACTGGGAATGAACTCCATATG
30901532 C
1 C
30901533 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:30902241 original size:26 final size:26
Alignment explanation
Indices: 30902203--30902255 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30902193 GGCTCAAACT
30902203 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTATGAATGAACTCCGTATG
30902229 CTTAGAC-ATTGAATGAACTCCGTATG
1 CTTAGACTA-TGAATGAACTCCGTATG
30902255 C
1 C
30902256 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTATGAATGAACTCCGTATG
Found at i:30902749 original size:25 final size:26
Alignment explanation
Indices: 30902701--30902752 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
30902691 CCGATCCGAT
*
30902701 CTTAGACTGGAAATGAACTTTATATG
1 CTTAGACTGGAAATGAACTGTATATG
*
30902727 CTTAGACTGG-GATGAACTGTATATG
1 CTTAGACTGGAAATGAACTGTATATG
30902752 C
1 C
30902753 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTGTATATG
Found at i:30903461 original size:26 final size:26
Alignment explanation
Indices: 30903423--30903475 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30903413 GGCTCAAACT
30903423 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
30903449 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
30903475 C
1 C
30903476 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:30903826 original size:159 final size:156
Alignment explanation
Indices: 30903448--30903873 Score: 460
Period size: 156 Copynumber: 2.7 Consensus size: 156
30903438 AACTCCGTAT
* ** *
30903448 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * ** *
30903513 CCGGTCGGAGAGGCAGAATGCACAACCCAGGGATCAGCCCGATCCCCCTATTTATGCTATCAATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTATACATGCTACCAATC
** * *
30903578 CTGCTGTCACCCTCGGTTTGGTCTGA
131 CCACTGACACCCTCGGTCTGGTCTGA
* * * * * *
30903604 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * * * *
30903668 GCCGATCGAAAAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCAGT
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTATACATGCTACCAAT
*
30903733 CCCACTGCCACAACCCTCGGTCTGG-CTGGG
130 CCCACTG--AC-ACCCTCGGTCTGGTCT-GA
* * * *
30903763 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
30903828 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCC
30903874 TCCTGCGTGC
Statistics
Matches: 218, Mismatches: 46, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
155 1 0.00
156 109 0.50
158 3 0.01
159 104 0.48
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTATACATGCTACCAATC
CCACTGACACCCTCGGTCTGGTCTGA
Found at i:30903968 original size:25 final size:26
Alignment explanation
Indices: 30903922--30903973 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
30903912 CCGGTCTGAT
30903922 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
30903948 CTTAGACTGG-GATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
30903973 C
1 C
30903974 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:30904719 original size:26 final size:26
Alignment explanation
Indices: 30904644--30904721 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
30904634 GCTTAAAATA
*
30904644 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
30904670 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
*
30904696 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
30904722 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:30905192 original size:26 final size:26
Alignment explanation
Indices: 30905163--30905232 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
30905153 TAGACTGGAA
*
30905163 ATGAACTCTGTATGCCTAGACTAGGG
1 ATGAACTCCGTATGCCTAGACTAGGG
*
30905189 ATGAACTCCGTATGCTTAGACTAGGG
1 ATGAACTCCGTATGCCTAGACTAGGG
*
30905215 ATGAACTCCATATGCCTA
1 ATGAACTCCGTATGCCTA
30905233 AGTTAACCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
ATGAACTCCGTATGCCTAGACTAGGG
Found at i:30905924 original size:26 final size:26
Alignment explanation
Indices: 30905895--30905947 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30905885 GGCTCAAAAT
30905895 CTTAGAC-TGTGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
*
30905921 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30905947 C
1 C
30905948 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30906348 original size:159 final size:157
Alignment explanation
Indices: 30905920--30906336 Score: 462
Period size: 157 Copynumber: 2.6 Consensus size: 157
30905910 AACTCCGTAT
* *
30905920 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
30905985 CTGGTCGGAGAGGCAGAATGCGCAAGCTGAGCATTGACCTGGTCCCCCCTACGTGCTGTCAATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCTGGTCCCCCCTACGTGCTGTCAATCC
* * *
30906050 TACTATCCAACCCTCAGTTCGATCTGA
131 CACTACCCAACCCTCAGTTCGAGCTGA
* * * * * * * * * *
30906077 TCTTAGA-TTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCATACAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
** * * * * **
30906141 GCCGACCGAAGAGGTATAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTACGTGCTGTCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCTGGTCCCCC-CTACGTGCTGTCAAT
* * * *
30906206 CCCACTGCCACAACCTTC-GGTCTG-GCTGGG
129 CCCACTACC-CAACCCTCAGTTC-GAGCT-GA
* * *
30906236 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
*
30906301 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCG
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCG
30906337 GCCCGATCCC
Statistics
Matches: 204, Mismatches: 50, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 90 0.44
158 24 0.12
159 88 0.43
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCTGGTCCCCCCTACGTGCTGTCAATCC
CACTACCCAACCCTCAGTTCGAGCTGA
Found at i:30906431 original size:26 final size:26
Alignment explanation
Indices: 30906395--30906447 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30906385 CTGATCTGAT
30906395 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30906421 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30906447 C
1 C
30906448 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30907330 original size:26 final size:26
Alignment explanation
Indices: 30907290--30907340 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30907280 CTATTCGATC
30907290 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
30907316 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
30907341 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:30908047 original size:26 final size:26
Alignment explanation
Indices: 30908009--30908061 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
30907999 GGCTCAAAAT
30908009 CTTAGACTGGGAATGCAA-TCCGTATG
1 CTTAGACTGGGAATG-AACTCCGTATG
30908035 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30908061 C
1 C
30908062 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30908234 original size:26 final size:26
Alignment explanation
Indices: 30908193--30908245 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30908183 TTGGTCTGAT
30908193 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
30908219 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
30908245 C
1 C
30908246 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:30908316 original size:184 final size:185
Alignment explanation
Indices: 30908007--30908348 Score: 456
Period size: 184 Copynumber: 1.9 Consensus size: 185
30907997 GTGGCTCAAA
* *
30908007 ATCTTAGACTGGGAATGCAATCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGAGAATGCAATCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
30908072 CCACGAAACGTGCGTGCAGGCACTCAGCCGACTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGC
66 CCACGAAACGAGCGTACAGGCACTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGC
* *
30908137 TCGGGCCCCC-CAACGTGCTGTCGATCCTGCTATCACAACCCTCAATTTGGTCTG
131 CCGAGCCCCCTCAACGTGCTGTCGATCCTGCTATCACAACCCTCAATTTGGTCTG
* *
30908191 ATCTTAGACTGAGAATG-AACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCA
1 ATCTTAGACTGAGAATGCAA-TCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* ** * * * *
30908254 ACCCACGAAACGAGTGTATGGGCACTTAGCTGGCCGGAGAGGCATAATACGCAAGCCGGGGATCA
64 ACCCACGAAACGAGCGTACAGGCACTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCA
* *
30908319 GCCCGATCCCCCTCTACGTGCTGTCGATCC
129 GCCCGAGCCCCCTCAACGTGCTGTCGATCC
30908349 CGCTGTCGGT
Statistics
Matches: 134, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
183 3 0.02
184 115 0.86
185 16 0.12
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (185 bp):
ATCTTAGACTGAGAATGCAATCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTACAGGCACTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGC
CCGAGCCCCCTCAACGTGCTGTCGATCCTGCTATCACAACCCTCAATTTGGTCTG
Found at i:30909453 original size:184 final size:184
Alignment explanation
Indices: 30909233--30909595 Score: 487
Period size: 184 Copynumber: 2.0 Consensus size: 184
30909223 GGTGTGGCTT
* * * * *
30909233 GGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGATTGGG
1 GGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCAATCTAGTCCGATCTTAGACTGGG
** * * *
30909298 AATAAACTCTGTATACTGAGACTGGGGATGAACTTCGTATGCCTAAGTCATCCCACGAAACGAGC
66 AATAAACTCCATATACTGAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * ** *
30909363 GTGCAGGTGCTC-AGCCGACCGGAGAGGC-AGAATGCGCAAGCTGGGGATCAGTTC
131 GTACAGGCGCTCGA-CCGACCAAAGAGGCAAG-ATGCGCAAGCCGGGGATCAGTTC
* *
30909417 GGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAATCTAGTCTGATCTTAGACTGGG
1 GGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCAATCTAGTCCGATCTTAGACTGGG
* * * * *
30909482 AATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
66 AATAAACTCCATATACTGAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
*
30909547 GTACGGGCGCTCGACCGACCAAAGAGGCAAGATGCGCAAGCCGGGGATC
131 GTACAGGCGCTCGACCGACCAAAGAGGCAAGATGCGCAAGCCGGGGATC
30909596 GAACGGGTGG
Statistics
Matches: 154, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
184 151 0.98
185 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
GGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCAATCTAGTCCGATCTTAGACTGGG
AATAAACTCCATATACTGAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTACAGGCGCTCGACCGACCAAAGAGGCAAGATGCGCAAGCCGGGGATCAGTTC
Found at i:30909507 original size:26 final size:26
Alignment explanation
Indices: 30909471--30909523 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30909461 CTAGTCTGAT
*
30909471 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
30909497 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
30909523 C
1 C
30909524 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:30910231 original size:26 final size:26
Alignment explanation
Indices: 30910193--30910245 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30910183 CACTCAAAAT
30910193 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
30910219 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
30910245 C
1 C
30910246 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:30910588 original size:159 final size:158
Alignment explanation
Indices: 30910218--30910649 Score: 418
Period size: 159 Copynumber: 2.7 Consensus size: 158
30910208 AACACCGTAT
*
30910218 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGTCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTCGTTCAG
* * * * * * *
30910283 CTGGCTGCAGAGGCAGCATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCGATCC
*** * ** *
30910348 TGTTGTCGTAACCCTCGATACGGCTCGA
131 CACTGCCACAACCCTCGATACAGCTCGA
* * * * ** * * *
30910376 TCTTAGAC-TGAGAATGAACTCTGTACGCATAAGTTAACCCACGAAACGAGCGTGCGGTCGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTCGTTCA
* * * * * * *
30910440 GCCGGCCGAAGAGGCATAATGTGCAGGCCGGGGATTGGCCTGATCCCCCTCTGCATGCTGCCTG-
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACATGCTACC-GA
* * * *
30910504 TCCCACTGCCACAACCCTCGGTCCAGCTGGG
128 TCCCACTGCCACAACCCTCGATACAGCTCGA
* * * * *
30910535 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTCGTTCAG
* * * * *
30910600 CCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGAACGGCCCGGTCCCCCCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCT
30910650 GCGTGCTGTC
Statistics
Matches: 211, Mismatches: 59, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
157 2 0.01
158 92 0.44
159 114 0.54
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTCGTTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCGATCC
CACTGCCACAACCCTCGATACAGCTCGA
Found at i:30910720 original size:158 final size:158
Alignment explanation
Indices: 30910219--30910720 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 158
30910209 ACACCGTATG
*
30910219 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGTCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTCGTTCAGC
* * * * * *
30910284 TGGCTGCAGAGGCAGCATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCT
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
** * *
30910349 GTTGTCGTAACCCTCGATACGGCTCGAT
131 ACTGTCGTAACCCTCGGTCCGGCTCGAT
* * * ** * * *
30910377 CTTAGAC-TGAGAATGAACTCTGTACGCATAAGTTAACCCACGAAACGAGCGTGCGGTCGTTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTCGTTCAG
* * * * * * * *
30910441 CCGGCCGAAGAGGCATAATGTGCAGGCCGGGGATTGGCCTGATCCCCCTCTGCATGCTGCCTG-T
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTC-GAT
* * ** * * **
30910505 CCCACTGCCACAACCCTCGGTCCAGCTGGGG
128 CCTACTGTCGTAACCCTCGGTCCGGCTCGAT
* * * * *
30910536 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGTTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTCGTTCAGC
* * * *
30910601 CGGCCGGAGAGGCAGAATGCGTAAGCTGGGGAACGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
*
30910666 ACTATCGTAACCCTCGGTCCGG-TCTGAT
131 ACTGTCGTAACCCTCGGTCCGGCTC-GAT
*
30910694 CTTAGAC-TGGGAATGAACTACGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30910721 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 71, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 5 0.02
158 144 0.54
159 114 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGTCGTTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGTCGTAACCCTCGGTCCGGCTCGAT
Found at i:30910730 original size:26 final size:26
Alignment explanation
Indices: 30910694--30910746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30910684 CCGGTCTGAT
30910694 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
30910720 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
30910746 C
1 C
30910747 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:30911145 original size:159 final size:158
Alignment explanation
Indices: 30910851--30911183 Score: 373
Period size: 159 Copynumber: 2.1 Consensus size: 158
30910841 TGTCGATCCC
* * * * *
30910851 GCTGTCGGTCCTGCTGCCACAACACTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCGTAT
1 GCTGTCGATCTTGCTGCCACAACACTCGGTCTGACTGGGGCTTAGACATGGAATGAACTACCTAT
** * * * *
30910916 GCCTAAACCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAACCGGAGAGGCAGAATGTACAAG
66 GCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAGACAACCAGAGAAGCAGAATGCACAAG
30910981 CCGGGGATCAACCCGAT-CCTTCCCTACGT
131 CCGGGGATCAACCCGATCCCTT--CTACGT
* * * *
30911010 GCTGTCGATCTTGCTGCCGCATCCCTCGTTCTGACTGGGGCTTAGACATGGAATGAACTACCTAT
1 GCTGTCGATCTTGCTGCCACAACACTCGGTCTGACTGGGGCTTAGACATGGAATGAACTACCTAT
* * * * ** **
30911075 GCCTAAGCCAACCGATGAAAC-AGGCGTGCGGGCACTCATACAGTCAGAGAAGCAGAATGCGTAA
66 GCCTAAACCAACCCACGAAACGA-GCGTGCGGGCACTCAGACAACCAGAGAAGCAGAATGCACAA
* ** *
30911139 GTCGGGGATCGGCCCGATCCCTTCTGCGT
130 GCCGGGGATCAACCCGATCCCTTCTACGT
*
30911168 GCTGCCGATCTTGCTG
1 GCTGTCGATCTTGCTG
30911184 TCGTAACCCT
Statistics
Matches: 144, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 21 0.15
159 119 0.83
160 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTGTCGATCTTGCTGCCACAACACTCGGTCTGACTGGGGCTTAGACATGGAATGAACTACCTAT
GCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAGACAACCAGAGAAGCAGAATGCACAAG
CCGGGGATCAACCCGATCCCTTCTACGT
Found at i:30911239 original size:26 final size:26
Alignment explanation
Indices: 30911210--30911260 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30911200 GGTCTGATCT
*
30911210 TAGATTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
*
30911236 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
30911261 TTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:30911969 original size:26 final size:26
Alignment explanation
Indices: 30911931--30911983 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30911921 GGCTAAAAAT
30911931 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
30911957 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
30911983 C
1 C
30911984 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30912405 original size:26 final size:26
Alignment explanation
Indices: 30912374--30912426 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30912364 CTGGTATGAT
*
30912374 CTTAGACTAGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
30912400 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30912426 C
1 C
30912427 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30913135 original size:26 final size:26
Alignment explanation
Indices: 30913098--30913149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30913088 ACTCAAAATA
*
30913098 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
30913124 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
30913150 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:30914350 original size:26 final size:26
Alignment explanation
Indices: 30914321--30914373 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30914311 CCGGTCCAAT
30914321 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
30914347 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
30914373 C
1 C
30914374 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:30920961 original size:26 final size:26
Alignment explanation
Indices: 30920923--30920975 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30920913 GGCTCAAAAT
*
30920923 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30920949 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
30920975 C
1 C
30920976 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30921406 original size:158 final size:157
Alignment explanation
Indices: 30920948--30921407 Score: 479
Period size: 158 Copynumber: 2.9 Consensus size: 157
30920938 AACTTTGTAT
* * *
30920948 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
*
30921013 CCGA-CAGAGAGTCAGAATGCGCAAGCCA-GGGATCGGCCCGGTCCCCCCTACGTGCTATCGATC
66 CCGACCAGAGAGGCAGAATGCGCAAG-CAGGGGATCGGCCCGGT-CCCCCTACGTGCTATCGATC
* *
30921076 CTGCTGCCGCAACCCTCAGTTCGGTCCGA
129 CTGCTGTCGCAACCCTCAGATCGGTCCGA
* * * * * *
30921105 TCTTAGAC-TGTGAATGAACTC-CGTATGCATAGGTCAACCCATGAAATGAGCATGCGGGTGCTG
1 GCTTAGACATG-GAATGAACTCTC-TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTC
* * *
30921168 AGCC-AGCC-GAAGAGGCATAATGCGCAAGCAGGGGATCGACCCAGTCCCCTCTACGTGCTATCG
64 AGCCGA-CCAG-AGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCC-CTACGTGCTATCG
* * * * *
30921231 GTCCCGCT-TCCACAACCCTC-GATCTGG-CTGGG
126 ATCCTGCTGT-CGCAACCCTCAGATC-GGTC-CGA
* * * *
30921263 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACTCATGAAATGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
* * * **
30921328 CCGACCAGAGAGGCAGAATGTGCAAGCTGGGGATTGGCCCGGTGCCCCCTACGTGCTGCCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGT-CCCCCTACGTGCTATCGATCC
* *
30921393 TACTGTCGTAACCCT
130 TGCTGTCGCAACCCT
30921408 TGGTCTAGTC
Statistics
Matches: 245, Mismatches: 42, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
156 3 0.01
157 65 0.27
158 167 0.68
159 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCTACGTGCTATCGATCCT
GCTGTCGCAACCCTCAGATCGGTCCGA
Found at i:30921451 original size:26 final size:26
Alignment explanation
Indices: 30921422--30921474 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30921412 CTAGTCTGAT
30921422 CTTAAACTAGGAATGAAC-TCTGTATG
1 CTTAAACTAGGAATGAACTTC-GTATG
* * *
30921448 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAAACTAGGAATGAACTTCGTATG
30921474 C
1 C
30921475 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTTCGTATG
Found at i:30922161 original size:159 final size:158
Alignment explanation
Indices: 30921829--30922597 Score: 593
Period size: 159 Copynumber: 4.8 Consensus size: 158
30921819 ACTCCATATG
* *
30921829 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *** *
30921894 CGACCGGAGAGGCA-GATGCGCAAGTCAGGGATCGGCCCGATCACCCCATAT--GTGCGGTCGAT
66 CGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTC-CCCC-TCTGCGTGCTACCGGT
* * *
30921956 CCTACTACCGCAACCCTCGATCTGGTCTGAT
129 CCTACTGCCACAACCCTCGATCCGG-CTGAT
* * * * * *
30921987 CTTAGA-TTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCTCTGAG
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
30922051 CTGGCCGTAAAGGCATAATGCACAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTC
65 CCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTC
*
30922116 CTACTGCCACAACCCTCGGTCCGGCTAGGA-
130 CTACTGCCACAACCCTCGATCCGGCT--GAT
* * * * * *
30922146 CTTAGACATGGAATGAACTTCCTATGCCTCAGCCAACCCACAAAATGGGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
30922211 CGGTCGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCTT
66 CGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGGT-CCCCCT-C-TGC-GT-G--C--
* * *
30922276 GTAGCTGGTCCTGCTGCCACAACCCTCGATCCAGTCTGAT
122 -TA-CCGGTCCTACTGCCACAACCCTCGATCC-GGCTGAT
* * * * *
30922316 CTTAGAC-TGGGAATGAAC-TCTGTATGCCTAAGTCAAACCACGAAATGAGCGTGCGGGCTCTGA
1 CTTAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** ** *
30922379 CGCCAGCCAGAGAGGCATAATGCGCAAG-CCGAGATTGGCCCAGTCCCCCTCTATGTGCTGTCAG
64 -GCCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGG
** * * **
30922443 TCCCGCTGCCACAACCCTCGGTCCGACTAGGG
128 TCCTACTGCCACAACCCTCGATCCGGCT-GAT
* * * * * * *
30922475 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCACTTCAG
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TCAG
** * * * * *
30922540 CCGGTAGGAGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCTC-CTGCGTGCTA
65 CCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTA
30922598 TCGATCTTAC
Statistics
Matches: 476, Mismatches: 107, Indels: 55
0.75 0.17 0.09
Matches are distributed among these distances:
157 2 0.00
158 75 0.16
159 233 0.49
160 29 0.06
161 1 0.00
162 3 0.01
163 3 0.01
164 1 0.00
165 1 0.00
166 3 0.01
167 1 0.00
168 1 0.00
169 13 0.03
170 85 0.18
171 25 0.05
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTCC
TACTGCCACAACCCTCGATCCGGCTGAT
Found at i:30922427 original size:329 final size:328
Alignment explanation
Indices: 30921829--30922672 Score: 982
Period size: 329 Copynumber: 2.6 Consensus size: 328
30921819 ACTCCATATG
* * *
30921829 CTTAGACACGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
** *
30921893 CCGACCGGAGAGGCAG-ATGCGCAAGTCAGGGATCGGCCCGATCACCCCATA--TG-TG-CG---
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATC-CCCCCTACGTGCTGTCGATC
* * * * *
30921950 --GT-C-GATCCTACTACCGCAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAA-TTTCGT
129 TTGTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCT-GT
* **
30922010 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCTCTGAGCTGGCCGTAAAGGCATAATGCACA
193 ATGCCTAAGTCAAACCACGAAACGAGCGTACGGGCTCTGAGCCAGCCGTAAAGGCATAATGCACA
* * * * * * *
30922075 AGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCCTACTGCCACAACCCTCGGTCCGG
258 AGTCCGAGATCGACCCAGTCCCCCTCTACGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCGA
30922140 CTAGGA
323 CTAGGA
* * *
30922146 CTTAGACATGGAATGAACTTCCTATGCCTCAGCCAACCCACAAAATGGGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGC
*
30922211 CGGTCGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCTT
66 CGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCTT
* * *
30922276 GTAGCTGGTCCTGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTAT
131 GT-GCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
* * * *
30922341 GCCTAAGTCAAACCACGAAATGAGCGTGCGGGCTCTGACGCCAGCCAG-AGAGGCATAATGCGCA
195 GCCTAAGTCAAACCACGAAACGAGCGTACGGGCTCTGA-GCCAGCC-GTAAAGGCATAATGCACA
* * * ** *
30922405 AG-CCGAGATTGGCCCAGTCCCCCTCTATGTGCTGTCAGTCCCGCTGCCACAACCCTCGGTCCGA
258 AGTCCGAGATCGACCCAGTCCCCCTCTACGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCGA
*
30922469 CTAGGG
323 CTAGGA
* * * *
30922475 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCACTTCAG
1 CTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGC-TCAG
* * * * * * * * * *
30922540 CCGGTAGGAGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCTCCTGCGTGCTATCGATCT
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCT
* * * * *
30922605 TACTGCTGGTCCTGTTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
130 T-GTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTA
30922670 TGC
194 TGC
30922673 TTAGACATGG
Statistics
Matches: 443, Mismatches: 65, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
317 73 0.16
318 30 0.07
319 2 0.00
320 2 0.00
321 2 0.00
326 2 0.00
328 1 0.00
329 190 0.43
330 139 0.31
331 2 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (328 bp):
CTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCTT
GTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
CCTAAGTCAAACCACGAAACGAGCGTACGGGCTCTGAGCCAGCCGTAAAGGCATAATGCACAAGT
CCGAGATCGACCCAGTCCCCCTCTACGTGCTACCAGTCCCACTGCCACAACCCTCGGTCCGACTA
GGA
Found at i:30922675 original size:26 final size:26
Alignment explanation
Indices: 30922646--30922698 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30922636 CCGGTCCGAT
*
30922646 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTACGTATG
30922672 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACATGGAATGAACTACGTATG
30922698 C
1 C
30922699 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTACGTATG
Found at i:30923086 original size:159 final size:158
Alignment explanation
Indices: 30922671--30923173 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 158
30922661 AACTCCGTAT
* * **
30922671 GCTTAGACATGGAATGAACTACGTATGCCTAATCCAACCCACGAAACGAGCGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * *
30922736 CCAACCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
** *
30922801 TGCTGCCGTAACCCTCAGTCCAGTTCAA
131 TGCTGCCACAACCCTCAGTCCAGCTCAA
* * * * * * * *
30922829 TCTTAGAC-TACGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
30922893 GCCGGCCAGAGAGGCATAATGCGTAAGCCAGGGATCAGTCGGGTCCCCCTCTACGTGCTG-CGGG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCC-CTACGTGCTGTC-GA
** ** ***
30922957 TCCTGCTGCCACAACCCTTGGTCTGGCTGGG
128 TCCTGCTGCCACAACCCTCAGTCCAGCTCAA
* * *
30922988 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
30923053 TCGGCCGGAGAGGCAGAATGCGCAAGTTGGGGATC-GACCCGGTCCCCCTTACGTGTTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCCGGTCCCCCCTACGTGCTGTCGATC
* * * *
30923117 CTGCT-ACAGCAACCCTCGGTCC-GATCCGA
130 CTGCTGCCA-CAACCCTCAGTCCAGCT-CAA
* *
30923146 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
30923174 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 142 0.53
159 121 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCAGCTCAA
Found at i:30923183 original size:26 final size:26
Alignment explanation
Indices: 30923147--30923199 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30923137 CCGATCCGAT
*
30923147 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30923173 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30923199 C
1 C
30923200 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30923899 original size:26 final size:26
Alignment explanation
Indices: 30923861--30923913 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30923851 GGCTCAAAAT
30923861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30923887 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30923913 C
1 C
30923914 CTCGTCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30924334 original size:158 final size:158
Alignment explanation
Indices: 30924032--30924374 Score: 375
Period size: 158 Copynumber: 2.2 Consensus size: 158
30924022 CCAGTCTGAT
* *
30924032 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAGC
*** * * * * * * *
30924097 CGGTTGGAGAGGCATAATGCGCAAGCCGGGATCGGCCGGGTCCCCCTCTGCGTGCTATCGGTCCT
66 CGACCGGAGAGGCAGAATGCACAAGCCGGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCCT
** * * *
30924162 ACTGCCACGGCCCTCGGTCTGGCTGGGG
131 ACTGCCACAACCCTCGGTCCGGCTCGAG
* * * *
30924190 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAG
* ** * *
30924254 TCGACCGGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGATCCCTC-CTGCGTGCTGCCGATC
65 CCGACCGGAGAGGCAGAATGCACAAG-CCGGGATCGACCCGATCCCCCTCTGCGTGCTACCGATC
* * * * *
30924318 CTGCTGTCGCAACCCTCGGTCCGGTTCGAT
129 CTACTGCCACAACCCTCGGTCCGGCTCGAG
30924348 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
30924375 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
157 1 0.01
158 133 0.89
159 16 0.11
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAGC
CGACCGGAGAGGCAGAATGCACAAGCCGGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCCT
ACTGCCACAACCCTCGGTCCGGCTCGAG
Found at i:30924377 original size:26 final size:26
Alignment explanation
Indices: 30924348--30924400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30924338 CCGGTTCGAT
30924348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30924374 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30924400 C
1 C
30924401 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30925113 original size:26 final size:26
Alignment explanation
Indices: 30925071--30925123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30925061 GGCTCAAAAT
30925071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30925097 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30925123 C
1 C
30925124 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30925333 original size:158 final size:157
Alignment explanation
Indices: 30925096--30925564 Score: 489
Period size: 158 Copynumber: 3.0 Consensus size: 157
30925086 AACTCCGTAT
* *
30925096 GCTTAGACATGGATTGAACTCCGTATGCCTAA-TCCAACCCACGAAACGAGCGTACAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCGTACAGGCGCTCA
* *
30925160 GCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGCCCCCCCTGTGTGCTGTCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGC-CGGCCCCCCCTGTGTGCTGCCGATC
* *
30925225 CTGCTACCATAGCCCTCGGTCCAG-TGTGA
129 CTGCTACCACAACCCTCGGTCCAGCTG-GA
* *
30925254 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAC-GGCTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGC-GCTC
* * * * * * *
30925317 AGCCGGTTGGAGAGGCATAATGCGCAAGACGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGG
64 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCC-GG-CCCCCCCTGTGTGCTGCCGA
* * * ** *
30925382 TCTTGCTGCCACAACCGTCGGTCTGGCTGGG
127 TCCTGCTACCACAACCCTCGGTCCAGCTGGA
* * * *
30925413 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCG-AGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA-CAGGCGCTCA
* * * * ** * * *
30925477 GTCGGCCGGAGAGGTAGAATGGGCAAGCCAAGGATCAACCCGGTCCCCCCTGTGTGTTGCCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCGGCCCCCCCTGTGTGCTGCCGATC
* * *
30925542 CTGCTGCCGCAACCCTTGGTCCA
129 CTGCTACCACAACCCTCGGTCCA
30925565 ATTCGATTGT
Statistics
Matches: 253, Mismatches: 48, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 123 0.49
159 117 0.46
160 8 0.03
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCGGCCCCCCCTGTGTGCTGCCGATCCT
GCTACCACAACCCTCGGTCCAGCTGGA
Found at i:30926332 original size:26 final size:26
Alignment explanation
Indices: 30926294--30926346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30926284 GGCTCAAAAT
*
30926294 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30926320 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30926346 C
1 C
30926347 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30926682 original size:159 final size:157
Alignment explanation
Indices: 30926319--30926765 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 157
30926309 AACTTCGTAT
* * *
30926319 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAG
* * * *
30926384 CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTGTGTGCTGTCAATCC
65 CCGCTCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCC
* *** * ***
30926449 TACTGCTGTAACCCTCGGTCTGGTCTGA
130 CACTGCCACAACCCTCGATCTCAACTGA
* * * * * *
30926477 TCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACTAGCATGCGGGCACTGAG
1 GCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAG
* * * * **
30926542 CCGACT-GAAGAGGCATAATGCACAAGCCGTGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGT
65 CCG-CTCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCC-CTGCGTGCTGTCAAT
* *
30926606 CCCGCTGCCACAACCCTCGATC-CAACTGGG
128 CCCACTGCCACAACCCTCGATCTCAACT-GA
* * * **
30926636 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACG-GACGTGCGGGTGCTCA
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAG-CATGCGGGCACTCA
* * * * *
30926700 GCCGGC-CAGAA-AGGTAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGCCAA
64 GCC-GCTC-GAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAA
30926763 TCC
127 TCC
30926766 TGCTACCGTA
Statistics
Matches: 229, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 110 0.48
159 113 0.49
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
CGCTCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCCC
ACTGCCACAACCCTCGATCTCAACTGA
Found at i:30927202 original size:26 final size:26
Alignment explanation
Indices: 30927173--30927225 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30927163 CCGGTTTGAT
30927173 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
30927199 CTTAGACATGGATTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30927225 C
1 C
30927226 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30927590 original size:159 final size:159
Alignment explanation
Indices: 30927198--30927609 Score: 429
Period size: 159 Copynumber: 2.6 Consensus size: 159
30927188 AACTCCGTAT
* * * **
30927198 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGAGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * *
30927263 CCGATTGAAAAGGCAAAATGCGTAAGCCGGAGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGATC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGAGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGATC
** *
30927328 CTGCTACCACAACCCTTGGTCCGATCCGG
131 CCACTACCACAACCCTCGGTCCGATCCGG
* * * * * * *
30927357 TCTTAGA-TTGGAAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * *
30927421 GCC-TTCCGGAGAGGCATAAA-GCGCAAGTCGGGGATCGAG-CCGGTCCCCCTCTGCGTGCTGTC
65 GCCGAT-CGGAGAGGCA-AAATGCGCAAGCCGGAGATCG-GCCCGGTCCCCCCCTGCGTGCTGTC
* * * *
30927483 GGTCCCACTGCCACAACCCTCGGTCCG-GCTGGG
127 GATCCCACTACCACAACCCTCGGTCCGATC-CGG
* * * * *
30927516 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCACCCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * *
30927581 CCGGTCGGAGAGGCAGAATACGCAAGCCG
66 CCGATCGGAGAGGCAAAATGCGCAAGCCG
30927610 AGGATCAACC
Statistics
Matches: 202, Mismatches: 43, Indels: 16
0.77 0.16 0.06
Matches are distributed among these distances:
158 7 0.03
159 187 0.93
160 8 0.04
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGATCGGAGAGGCAAAATGCGCAAGCCGGAGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGATC
CCACTACCACAACCCTCGGTCCGATCCGG
Found at i:30927710 original size:26 final size:26
Alignment explanation
Indices: 30927674--30927726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30927664 TTGGTCCAAT
*
30927674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30927700 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30927726 C
1 C
30927727 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30931677 original size:26 final size:26
Alignment explanation
Indices: 30931641--30931692 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30931631 TCGACCCGAT
*
30931641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
30931667 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
30931693 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:30933608 original size:26 final size:26
Alignment explanation
Indices: 30933566--30933618 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30933556 TCGGTCCGAT
30933566 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
30933592 CTTAGACAT-GGATTGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
30933618 C
1 C
30933619 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30938456 original size:26 final size:26
Alignment explanation
Indices: 30938420--30938472 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30938410 TCGACCCGAT
*
30938420 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
30938446 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
30938472 C
1 C
30938473 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:30939520 original size:26 final size:26
Alignment explanation
Indices: 30939482--30939534 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30939472 GGCTCAAAAT
30939482 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30939508 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30939534 C
1 C
30939535 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30939934 original size:158 final size:158
Alignment explanation
Indices: 30939507--30939951 Score: 416
Period size: 159 Copynumber: 2.8 Consensus size: 158
30939497 AACTCCGTAT
* * *
30939507 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGCAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
30939572 TCGGTTGGAG-GGCAGAATGT-GTAAGCCAGGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATC
66 CCGGTCGGAGAGGCAAAAT-TCGCAAGCCAGGGATCAGCCCGGTCCCCTCTACGTGCTGTCGATC
* ** **
30939635 CTACTACTGCAACCATCGGTCTGGTCGAA
130 CCACTACCACAACCATCGGTCTACTCGAA
* * ** * *
30939664 TCTTAGAC-TGGGAATGAACT-CCTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *** * * * *
30939727 GCCGGTCGAAGAGG-AATAATACGCAAGTTGGGGATCAACCCGATCCCCCTCTACGTGCTGTTGG
65 GCCGGTCGGAGAGGCAA-AATTCGCAAGCCAGGGATCAGCCCGGT-CCCCTCTACGTGCTGTCGA
* * * **
30939791 TCCCATTGCCACAACCTTCGGTCCTACT-GGG
128 TCCCACTACCACAACCATCGGT-CTACTCGAA
* * * *
30939822 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
30939887 CCAGTCGGAGAGGCAAAATTCGCAAGCCAGGGATTGGCCCGGTCCCCTTTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAAAATTCGCAAGCCAGGGATCAGCCCGGTCCCCTCTACGTGCTGTCGATCC
30939952 TGCTGTCGCA
Statistics
Matches: 221, Mismatches: 58, Indels: 17
0.75 0.20 0.06
Matches are distributed among these distances:
156 45 0.20
157 37 0.17
158 68 0.31
159 69 0.31
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATTCGCAAGCCAGGGATCAGCCCGGTCCCCTCTACGTGCTGTCGATCC
CACTACCACAACCATCGGTCTACTCGAA
Found at i:30940363 original size:170 final size:170
Alignment explanation
Indices: 30940006--30940367 Score: 390
Period size: 171 Copynumber: 2.1 Consensus size: 170
30939996 AACTCTGTAT
* *
30940006 GCTTAGACTGAGG-ATGAACTCCTCATGCCTAAGTCAACCCATAAAACGACCGTACGAGCGCTCA
1 GCTTAGACTG-GGAATGAACT-CTCATGCCTAAGCCAACCCACAAAACGACCGTACGAGCGCTCA
* * * * *
30940070 GTCGGCAGGAGAGGAATAATGCGTAAGCCGAGGATCAACTCGATCCCACTCTGCGTGCTGTCGAT
64 GCCAGCAGGAGAGGAAGAATGCGCAAGCCGAGGATCAACTCGATCCCACCCTGCGTGCTGTCGAT
* * ** *
30940135 CTCGCTGCTGGTCCTGCTGCCACAACCCTCGGCCCGGTTGGG
129 CTCGCTACTGGTCCTGCTGCCACAACCCTCGGCCCGATCCGA
* * * * *
30940177 GCTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCT-CATGCCTAAGCCAACCCACAAAACGACCGTACGAGCGCTCA
* * * * * ** * *
30940241 GCCAGCCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCTCGGTCCC-CCCTGCGTGCTGTTGAT
64 GCCAGCAGGAGAGGAAGAATGCGCAAGCCGAGGATCAACTCGATCCCACCCTGCGTGCTGTCGAT
* *
30940305 C-CTGCTATTGGTCCTGCTGCCACAACCCTCGGTCCGATCCGA
129 CTC-GCTACTGGTCCTGCTGCCACAACCCTCGGCCCGATCCGA
*
30940347 TCTTAGACTGGGAATGAACTC
1 GCTTAGACTGGGAATGAACTC
30940368 CGTATGCTTA
Statistics
Matches: 157, Mismatches: 29, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
169 2 0.01
170 70 0.45
171 84 0.54
172 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCTCATGCCTAAGCCAACCCACAAAACGACCGTACGAGCGCTCAGC
CAGCAGGAGAGGAAGAATGCGCAAGCCGAGGATCAACTCGATCCCACCCTGCGTGCTGTCGATCT
CGCTACTGGTCCTGCTGCCACAACCCTCGGCCCGATCCGA
Found at i:30940643 original size:158 final size:158
Alignment explanation
Indices: 30940374--30940875 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 158
30940364 ACTCCGTATG
* * *** ** ** *
30940374 CTTAGACATGGATTGAACTTTGTATGCCTAAGCCAACGGGTGAAACGAGCGAACGGGCACTCAAC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * *
30940439 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGACTGACCT-GGTCCCCCCTGCGTGCTATCGATCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGA-TCAGCTCGGTCCCCCCTGCATGCTATCGATCC
* * *
30940503 TACTGTCGCAACCCTCAGTCCAGTCCGAT
130 TGCTATCGCAACCCTCGGTCCAGTCCGAT
* * *
30940532 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * *
30940596 CCAACCGGAGACGCATAATGCGTAAGTCGGGGATCAGCTCGATCCCCCTCTGCATGCTATCGGTC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCC-CTGCATGCTATCGATC
* * * * **
30940661 CCGCTATCACAACCCTTGGTCCGACTGGGGA-
129 CTGCTATCGCAACCCTCGGTCC-AGT-CCGAT
* * * * * *
30940692 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGAGTGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * *
30940756 CGGCTAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTACCGATCCT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCATGCTATCGATCCT
* * *
30940821 GCTACCGCAACCCTCGGTCTAGTCTGAT
131 GCTATCGCAACCCTCGGTCCAGTCCGAT
30940849 CTTAGAC-TAGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTTCGTATGC
30940876 TTAGACTACG
Statistics
Matches: 271, Mismatches: 64, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 8 0.03
158 138 0.51
159 118 0.44
160 3 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCATGCTATCGATCCT
GCTATCGCAACCCTCGGTCCAGTCCGAT
Found at i:30940888 original size:26 final size:26
Alignment explanation
Indices: 30940849--30940901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30940839 CTAGTCTGAT
* *
30940849 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
30940875 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
30940901 C
1 C
30940902 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:30941620 original size:26 final size:26
Alignment explanation
Indices: 30941582--30941634 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30941572 GGCTCAAAAT
30941582 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30941608 CTTAGACAT-GGAATGGACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30941634 C
1 C
30941635 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30941961 original size:25 final size:26
Alignment explanation
Indices: 30941926--30941977 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
30941916 CTGGTCTAAT
30941926 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30941951 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30941977 C
1 C
30941978 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30942307 original size:169 final size:171
Alignment explanation
Indices: 30941950--30942316 Score: 410
Period size: 169 Copynumber: 2.2 Consensus size: 171
30941940 GAACTCGTAT
* * * *
30941950 GCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCCTGAAACGAGCGTGCAGGCGCTCTG
1 GCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCCCTGAAACGAGCGTGCAGGCGCTCAG
* * * *
30942015 CCAGCCGAAGAGGCATAATGCGTAAGTCGAGGATCAGCTCGATCCCCCTCTACGTTCAGTCGATC
66 CCAGCCGAAGAGGCAGAATGCGAAAGACGAGGATCAGCTCGATCCCCCTCTACGTGCAGTCGATC
* * *
30942080 CCGCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGGTTGGG
131 CCGCTGTCAGTCATGCTGCCACAAACCTCGGTCCGGTTGGA
* *
30942121 GCTTAGA-CATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAACGAGTGTGC-GGACGCT
1 GCTTAGATTA-GGAATGAACTCCGTATGCCTAAGCCAACCC-CTGAAACGAGCGTGCAGG-CGCT
* * * * * * *
30942183 CAGCCAGTCGGAG-GGCAGAATGCGAAAGACGGGGATCGGC-CTGGTCCCCC-CTGCGTGCTGTC
63 CAGCCAGCCGAAGAGGCAGAATGCGAAAGACGAGGATCAGCTC-GATCCCCCTCTACGTGCAGTC
*
30942245 GATCCTGCTG-CTAGTCATGCTG-CAGCAAACCTCGGTCCGGTCT-GA
127 GATCCCGCTGTC-AGTCATGCTGCCA-CAAACCTCGGTCCGGT-TGGA
*
30942290 TCTTAGATTAGGAATGAACTCCGTATG
1 GCTTAGATTAGGAATGAACTCCGTATG
30942317 GTTAGACATG
Statistics
Matches: 165, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
168 3 0.02
169 67 0.41
170 33 0.20
171 61 0.37
172 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (171 bp):
GCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCCCTGAAACGAGCGTGCAGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGAAAGACGAGGATCAGCTCGATCCCCCTCTACGTGCAGTCGATC
CCGCTGTCAGTCATGCTGCCACAAACCTCGGTCCGGTTGGA
Found at i:30942672 original size:159 final size:155
Alignment explanation
Indices: 30942318--30942817 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 155
30942308 CTCCGTATGG
* *
30942318 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * *
30942383 GGTCGGAGAGGCAGAATACGTAAGCCGGGGACTAGCTCGATCCCCCCCGTG-TGCTGTCGATCCT
66 GGCCGGAGAGGCAGAATGCGTAAGCC-GGGA-TAGCCCGAT-CCCCCC-TGCTGCTGCCGGTCCT
* * * *
30942447 GTTGCCGCAACCCTCGATCCGGTCCGATC
127 GCTGCCGCAACCCTCGGTCCGCTCCGAGC
*** * * *
30942476 TTAGAC-TGGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
30942540 CGGCCGGAAAGGCATAATGCGTAAGTCGGTGATTTGCCC-AGTCCCCCTCTGCATGCTGCCGGT-
65 CGGCCGGAGAGGCAGAATGCGTAAGCCGG-GA-TAGCCCGA-TCCCCC-CTGC-TGCTGCCGGTC
* * *
30942603 CTCGCTGCCACAACCCTCGGTCCAGCT-GGGGC
125 CT-GCTGCCGCAACCCTCGGTCC-GCTCCGAGC
* *
30942635 TTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * *
30942700 AGCTGGAGAGGCAGAATGTGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTGCCGGTCCTGC
66 GGCCGGAGAGGCAGAATGCGTAAGCCGGGATAG-CCCGATCCCCCCTGC-TGCTGCCGGTCCTGC
* * * * *
30942765 TGCCGCAACCCTTGGTCTGGTCCTATC
129 TGCCGCAACCCTCGGTCCGCTCCGAGC
* *
30942792 TTAGGC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCCTATGC
30942818 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 52, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 67 0.24
158 99 0.36
159 104 0.38
160 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (155 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
GGCCGGAGAGGCAGAATGCGTAAGCCGGGATAGCCCGATCCCCCCTGCTGCTGCCGGTCCTGCTG
CCGCAACCCTCGGTCCGCTCCGAGC
Found at i:30943789 original size:159 final size:158
Alignment explanation
Indices: 30943464--30943956 Score: 384
Period size: 158 Copynumber: 3.1 Consensus size: 158
30943454 GCTTATACAT
* * * * * * * * * * *
30943464 GGAATGAACTTCGTATGCCTAAGCTAACCTACGAAATGAGCGTACGGGCGCTCAGTCGGTCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAGCCGAAG
* * * * * * * *
30943529 AGGCAGAATGCACAAGC-CGGGATCGGCCCAGTCCCCCCCTACGTGCTATC-GATCCTGCTACCG
66 AGGCAGAATGCGCAAGCAAGGGATCAGCCCAGT-CCCCCCTGCATGCT-GCAGATCCTGCTGCCA
* ** * * **
30943592 TAACCCTCAATTCAGTCT-GATCTTAGACTG
129 CAACCCTC-GGTCTGGCTGGGGCTTAGACTG
*** * ** *
30943622 GGAATGAACTCCGTATGCATAAGTTGACTCATGAAACGAGCGTGCGGGCACTGAGCC-GACCGAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAG-CCGAA
* *
30943686 GAGGCATAATGCGCAAGCAAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCAGGTCCTGCTGCCA
65 GAGGCAGAATGCGCAAGCAAGGGATCAGCCCAGTCCCCC-CTGCATGCTGCAGATCCTGCTGCCA
30943751 CAACCCTCGGTCTGGCTGGGGCTTAGACAT-
129 CAACCCTCGGTCTGGCTGGGGCTTAGAC-TG
* * * * * *
30943781 GGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGCCAGCCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAGCCGAAG
* * * * * * * * *
30943846 AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGATCTTGCTGTCGCA
66 AGGCAGAATGCGCAAGCAAGGGATCAGCCCAGTCCCCCCTGCATGCTGCAGATCCTGCTGCCACA
* ** ****
30943911 ACCCTCGGTTTGATTCAATCTTAGACTG
131 ACCCTCGGTCTGGCTGGGGCTTAGACTG
30943939 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
30943957 TTAGACTAGG
Statistics
Matches: 265, Mismatches: 62, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 133 0.50
159 128 0.48
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAGCCGAAG
AGGCAGAATGCGCAAGCAAGGGATCAGCCCAGTCCCCCCTGCATGCTGCAGATCCTGCTGCCACA
ACCCTCGGTCTGGCTGGGGCTTAGACTG
Found at i:30943956 original size:158 final size:157
Alignment explanation
Indices: 30943464--30943956 Score: 488
Period size: 159 Copynumber: 3.1 Consensus size: 157
30943454 GCTTATACAT
* * * * *
30943464 GGAATGAACTTCGTATGCCTAAGCTAACCTACGAAATGAGCGTACGGGCGCTCAGTCGGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAG-CCGCCGAAG
* * ** * *
30943529 AGGCAGAATGCACAAGCC-GGGATCGGCCCAGTCCCCCCCTACGTGCTATCGATCCTGCTACCGT
65 AGGCAGAATGCGCAAGCCAGGGATCGGCCCAGT-CCCCCCTGCGTGCTGCCGATCCTGCTGCCGC
** * *
30943593 AACCCTC-AATTCAGTCTGATCTTAGACTG
129 AACCCTCGGTTTGACTC-GATCTTAGACTG
* * * * * * * *
30943622 GGAATGAACTCCGTATGCATAAGTTGACTCATGAAACGAGCGTGCGGGCACTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG-CCGAAG
* * * * * * *
30943687 AGGCATAATGCGCAAGCAAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCAGGTCCTGCTGCCAC
65 AGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCC-CTGCGTGCTGCCGATCCTGCTGCCGC
* * * **
30943752 AACCCTCGGTCTGGCTGGGGCTTAGACAT-
129 AACCCTCGGTTTGACTCGATCTTAGAC-TG
* * * * *
30943781 GGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGCCAGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCC-GCCGAAG
* * * *
30943846 AGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGATCTTGCTGTCGCA
65 AGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCA
* *
30943911 ACCCTCGGTTTGATTCAATCTTAGACTG
130 ACCCTCGGTTTGACTCGATCTTAGACTG
30943939 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
30943957 TTAGACTAGG
Statistics
Matches: 261, Mismatches: 67, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 126 0.48
159 128 0.49
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGCCGAAGA
GGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAA
CCCTCGGTTTGACTCGATCTTAGACTG
Found at i:30943971 original size:26 final size:26
Alignment explanation
Indices: 30943930--30944034 Score: 151
Period size: 26 Copynumber: 4.0 Consensus size: 26
30943920 TTGATTCAAT
*
30943930 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
30943956 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
*
30943982 CCTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
30944008 CTTAGCCAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
30944034 C
1 C
30944035 CTAAGCCAAC
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
25 3 0.04
26 65 0.90
27 4 0.06
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30944010 original size:52 final size:52
Alignment explanation
Indices: 30943932--30944037 Score: 169
Period size: 52 Copynumber: 2.0 Consensus size: 52
30943922 GATTCAATCT
* *
30943932 TAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCTTAGCCAT-GGAATGAACTCTGTATGCC
*
30943984 TAGACTGGGAATGAACTCTGTATGCTTAGCCATGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCTTAGCCATGGAATGAACTCTGTATGCC
30944036 TA
1 TA
30944038 AGCCAACCCA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
52 49 0.98
53 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (52 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGCCATGGAATGAACTCTGTATGCC
Found at i:30944363 original size:159 final size:159
Alignment explanation
Indices: 30944014--30944474 Score: 515
Period size: 159 Copynumber: 2.9 Consensus size: 159
30944004 TATGCTTAGC
* *
30944014 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGTCG
1 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
* * **
30944079 GAGAGGC-TGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTTTGCGTGCTGTCGATCCTGCTG
66 AAGAGGCAT-AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTG
* * * *
30944142 CCACAACCCTCGGTTCGGTCTGATCTTAGA
130 CCACAACCCTCAGTCCGGTCTGAGCTTACA
* * * * * *
30944172 C-TAGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGTC
1 CAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
* * *
30944236 GAAGAGGCATAACGCGCAAGTCGGGGA-CTGGCCCGATCCCCCTCTGCGTGCTACCGAT-CTCGC
65 GAAGAGGCATAATGCGCAAGCCGGGGATC-GGCCCGGTCCCCCTCTGCGTGCTACCGATCCT-GC
*
30944299 TGCCACAACCCTCAGTCCGG-CTGGGGCTTACA
128 TGCCACAACCCTCAGTCCGGTCT-GAGCTTACA
** * *
30944331 CATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTC-
1 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
* * * ** **
30944395 AGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTTCGTGCTGTCGATCCTGCAC
66 A-AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTG
* *
30944459 CCGCAACCCTCGGTCC
130 CCACAACCCTCAGTCC
30944475 AGTTCGATCC
Statistics
Matches: 251, Mismatches: 42, Indels: 20
0.80 0.13 0.06
Matches are distributed among these distances:
157 2 0.01
158 116 0.46
159 131 0.52
160 2 0.01
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.18
Consensus pattern (159 bp):
CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
AAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGC
CACAACCCTCAGTCCGGTCTGAGCTTACA
Found at i:30944496 original size:553 final size:553
Alignment explanation
Indices: 30943431--30944538 Score: 1492
Period size: 553 Copynumber: 2.0 Consensus size: 553
30943421 CTCAAAATCA
* * *
30943431 TAGACTGGGAATGAACTCCGTATGCTTATACATGGAATGAACTTCGTATGCCTAAGCTAACCTAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAC
* *
30943496 GAAATGAGCGTACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCACAAGCCGGGATCGGCCCAGT
66 GAAACGAGCATACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCACAAGCCGGGATCGGCCCAGT
** *
30943561 CCCCCCCTACGTGCTATCGATCCTGCTACCGTAACCCTCAATTCAGTCTGATCTTAGACTGGGAA
131 CCCCCCCTACGTGCTATCGATCCTGCTACCACAACCCTCAATTCAGTCTGATCTTAGACTAGGAA
** * **
30943626 TGAACTCCGTATGCATAAGTTGACTCATGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGC
196 TGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGC
* * *
30943691 ATAATGCGCAAGCAAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCAGGTCCTGCTGCCACAACC
261 ATAACGCGCAAGCAAGGGATCAGCCCAGTCCCCCTCTGCATGCTACAGATCCTGCTGCCACAACC
* * * * * *
30943756 CTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGG
326 CTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGGG
* *
30943821 CGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCCT
391 CGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCT
* *** ** *
30943886 GCGTGCTGCCGATCTTGCTGTCGCAACCCTCGGTTTGATTCAATCTTAGACTGGGAATGAACTCC
456 GCGTGCTGCCGATCCTGCACCCGCAACCCTCGGTCAGATTCAATCCTAGACTGGGAATGAACTCC
*
30943951 GTATGCTTAGACTAGGGATGAACTCTGTATGCC
521 GTATGCTTAGACTAGGGATGAACTCCGTATGCC
* *
30943984 TAGACTGGGAATGAACTCTGTATGCTTAGCCATGGAATGAAC-TCTGTATGCCTAAGCCAACCCA
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCA
* * * * *
30944048 CGAAACGAGCATGCGGGCGCTCAGTCGGTCGGAGAGGCTGAATGCGCAAGCCGGGGATCGGCCCG
65 CGAAACGAGCATACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCACAAGCC-GGGATCGGCCCA
** * * * ** *
30944113 GT-CCCCTTTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTAGG
129 GTCCCCCCCTACGTGCTATCGATCCTGCTACCACAACCCTCAATTCAGTCTGATCTTAGACTAGG
* * ** **
30944177 AATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGTCGAAGAG
194 AATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAG
* * * *
30944242 GCATAACGCGCAAGTC-GGGGA-CTGGCCC-GATCCCCCTCTGCGTGCTACCGAT-CTCGCTGCC
259 GCATAACGCGCAAG-CAAGGGATC-AGCCCAG-TCCCCCTCTGCATGCTACAGATCCT-GCTGCC
*
30944303 ACAACCCTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGA
320 ACAACCCTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAA
* * * *
30944368 AACGGGCGTGCGGGCGCTCAGCCGGTCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTC
385 AACGGGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTC
* * * *
30944433 CCCCCTTCGTGCTGTCGATCCTGCACCCGCAACCCTCGGTCCAG-TTCGATCCTAGATTGGGAAT
450 CCCCCTGCGTGCTGCCGATCCTGCACCCGCAACCCTCGGT-CAGATTCAATCCTAGACTGGGAAT
* *
30944497 GAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
514 GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCC
30944537 TA
1 TA
30944539 AATCAACCCA
Statistics
Matches: 480, Mismatches: 68, Indels: 14
0.85 0.12 0.02
Matches are distributed among these distances:
552 6 0.01
553 459 0.96
554 15 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (553 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAC
GAAACGAGCATACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCACAAGCCGGGATCGGCCCAGT
CCCCCCCTACGTGCTATCGATCCTGCTACCACAACCCTCAATTCAGTCTGATCTTAGACTAGGAA
TGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGC
ATAACGCGCAAGCAAGGGATCAGCCCAGTCCCCCTCTGCATGCTACAGATCCTGCTGCCACAACC
CTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGGG
CGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCT
GCGTGCTGCCGATCCTGCACCCGCAACCCTCGGTCAGATTCAATCCTAGACTGGGAATGAACTCC
GTATGCTTAGACTAGGGATGAACTCCGTATGCC
Found at i:30944514 original size:26 final size:26
Alignment explanation
Indices: 30944485--30944535 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30944475 AGTTCGATCC
* *
30944485 TAGATTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
30944511 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
30944536 CTAAATCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:30945244 original size:26 final size:26
Alignment explanation
Indices: 30945206--30945258 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30945196 GGCTCAAAAT
30945206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30945232 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
30945258 C
1 C
30945259 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30945602 original size:159 final size:158
Alignment explanation
Indices: 30945231--30945820 Score: 565
Period size: 158 Copynumber: 3.7 Consensus size: 158
30945221 AACTCCGTAT
* * * * * *
30945231 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
* * * * * * **
30945296 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCCTG-CGTGCTATCGATC
66 CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCC-GATGTGCTGCCGATC
** ** * * ***
30945360 CTGCTACTGCAACCCTCGGTCC-GATCCCA
130 CCACTACCACAACCCTCAGTCCGGCT-GGG
* * * * * ** * *
30945389 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGACCGTGCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCA
* * * * * ** *
30945453 GCCAGCCGAAGAGGCATAATGCGTAAACCGGGGATCAGCCTGGTCCCCCTCTATGTGCTGTTGGT
65 GCCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCC-CGATGTGCTGCCGAT
* *
30945518 CCCGCTACCACAACCCTCAGTCTGGCTGGG
129 CCCACTACCACAACCCTCAGTCCGGCTGGG
* * ** *
30945548 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
* * *
30945613 CCAGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCTCCGGTGTGCTGCCGATCC
66 CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCGATGTGCTGCCGATCC
* * *
30945678 CACTGCCACAACCCTCGGTCCGGCTGTG
131 CACTACCACAACCCTCAGTCCGGCTGGG
* *
30945706 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCAGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-GGGTGCTCA
* * * * **
30945771 GTCGGCTGGAGAGGCAGAATGCGTAAGCCGAGGATTGGCCCGGTCCCCCC
65 GCCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCC
30945821 TGCATTCTGT
Statistics
Matches: 349, Mismatches: 77, Indels: 11
0.80 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 179 0.51
159 166 0.48
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCGATGTGCTGCCGATCC
CACTACCACAACCCTCAGTCCGGCTGGG
Found at i:30945738 original size:158 final size:156
Alignment explanation
Indices: 30945230--30945892 Score: 619
Period size: 159 Copynumber: 4.2 Consensus size: 156
30945220 GAACTCCGTA
* * *
30945230 TGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTGCGGGTGCTCA
1 TGCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
30945295 GCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCCTGCGTGCTATCGATC
65 GCCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
** ** * **
30945360 CTGCTACTGCAACCCTCGGTCCGATCCCA
130 CCACTACCACAACCCTCGGTCCG--GCTG
* * * * * *
30945389 T-CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGACCGTGCGAGTGCTGA
1 TGCTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * ** * *
30945453 GCCAGCCGAAGAGGCATAATGCGTAAACCGGGGATCAGCCTGGTCCCCCTCTATGTGCTGTTGGT
65 GCCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * *
30945518 CCCGCTACCACAACCCTCAGTCTGGCTGG
129 CCCACTACCACAACCCTCGGTCCGGCT-G
* * * * * **
30945547 GGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCA
1 TGCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
30945612 ACCAGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCTCCGGTGTGCTGCCGATC
65 GCCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
*
30945677 CCACTGCCACAACCCTCGGTCCGGCTG
130 CCACTACCACAACCCTCGGTCCGGCTG
* * * *
30945704 TGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCAGGGTGCT
1 T-GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGTGCT
* * * * ** * *
30945769 CAGTCGGCTGGAGAGGCAGAATGCGTAAGCCGAGGATTGGCCCGGTCCCCCCTGCATTCTGTCGA
63 CAGCCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGA
* ** *
30945834 TCCTACTGTCACAACCCTCGGTACGGTCTG
128 TCCCACTACCACAACCCTCGGTCCGG-CTG
*
30945864 AT-CTTAGACTGGGAATGAACTCCGTATGC
1 -TGCTTAGACT-GGAATGAACTCCCTATGC
30945893 TTAGATTGGG
Statistics
Matches: 409, Mismatches: 85, Indels: 20
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 178 0.44
159 223 0.55
160 4 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
TGCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
CACTACCACAACCCTCGGTCCGGCTG
Found at i:30945902 original size:26 final size:26
Alignment explanation
Indices: 30945866--30945918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30945856 ACGGTCTGAT
30945866 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
30945892 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30945918 C
1 C
30945919 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30946271 original size:26 final size:26
Alignment explanation
Indices: 30946220--30946272 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30946210 CTGATCCAAT
*
30946220 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30946246 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30946272 C
1 C
30946273 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30946664 original size:158 final size:155
Alignment explanation
Indices: 30946408--30946917 Score: 546
Period size: 159 Copynumber: 3.2 Consensus size: 155
30946398 ACCCTTGGCC
** *
30946408 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGG
1 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGG
* * * *
30946473 GCGCTCAGCAAGCCGGAAAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTACGTGCT
66 GCGCTGAGCGA-TCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGATCCCCCCTAC-TGCT
*
30946538 GTCGATCCTGCTATAGCAACCCTC-ATT
128 GTCGATCCTGCTACAGCAACCCTCGATT
*
30946565 CTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCG
1 C-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCG
* * * * * *
30946630 GGCGCTGAGCTGATCGGAGAGGCATAATGTGCAAGCTGGGGATCAGCCTGGTCCCCCTCTATCTG
65 GGCGCTGAGC-GATCGGAGAGGCAGAATGCGCAAGC-AGGGATCGGCCCGATCCCCC-CTA-CTG
* * * *
30946695 CTGCCGGTCCTGCTGCCA-CAACCCTCGGTT
126 CTGTCGATCCTGCT-ACAGCAACCCTCGATT
* * * *
30946725 CG-GCTGGGTCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGC
1 CGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGC
* * * * *
30946788 GGGCGCTTG-GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCTCGCT-CCCCCTGCAT
64 GGGCGC-TGAG-CGATCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGATCCCCCCTAC-T
* * *
30946851 GCTGTCGATCCTACTGCCGCAACCCTCGATT
125 GCTGTCGATCCTGCTACAGCAACCCTCGATT
* *
30946882 CGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
30946918 TTAGACTGGG
Statistics
Matches: 293, Mismatches: 44, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
156 3 0.01
157 55 0.19
158 110 0.38
159 115 0.39
160 10 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGG
GCGCTGAGCGATCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCCTACTGCTGTC
GATCCTGCTACAGCAACCCTCGATT
Found at i:30946942 original size:26 final size:26
Alignment explanation
Indices: 30946891--30946943 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30946881 TCGGTCTGAT
**
30946891 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30946917 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30946943 C
1 C
30946944 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30953995 original size:158 final size:158
Alignment explanation
Indices: 30953534--30954000 Score: 498
Period size: 158 Copynumber: 2.9 Consensus size: 158
30953524 AACTCCGTAT
*
30953534 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
30953599 CCGACCGGAGAGGTAGAATGCACAAGTCGAGGATCGACCCGATCCCTCCCTACGTGCTGTC-GAT
66 CCGACCGGAGAGGCAGAATGCACAAG-CGAGGATCGGCCCGATCCC-CCTTGCGTGCTGTCGGAT
* * * *
30953663 CCTGCTGCTGCCACCGTCGGTCCAGTCTAA
129 CCTGCTGCCGCAACCCTCAGTCCAGTCTAA
* * ** * * * *
30953693 TCTTAGAC-TAGGAATGAACTTCGTATGCATAAG-TGACCCACGAAATGAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
30953756 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATTGGCCCGATCCCCCTTTGCGTGTTGTCGG-
65 GCCGACCGGAGAGGCAGAATGCACAAG-CGAGGATCGGCCCGATCCCCC-TTGCGTGCTGTCGGA
* * **
30953820 TCCCGCTGCCACAACCCTCAGTCCAGT-TGGG
128 TCCTGCTGCCGCAACCCTCAGTCCAGTCT-AA
* * * * * * *
30953851 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
30953916 CCGGCCGGAGAGGCAGAATGCACAAGC-AGGTGATCGGCCCGATCCCCCTTGCGTGCT-ACGGAT
66 CCGACCGGAGAGGCAGAATGCACAAGCGA-G-GATCGGCCCGATCCCCCTTGCGTGCTGTCGGAT
30953979 CCTGCTGCCGCAACCCTCAGTC
129 CCTGCTGCCGCAACCCTCAGTC
30954001 TCATCCGATC
Statistics
Matches: 248, Mismatches: 51, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 152 0.61
159 89 0.36
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCGAGGATCGGCCCGATCCCCCTTGCGTGCTGTCGGATCC
TGCTGCCGCAACCCTCAGTCCAGTCTAA
Found at i:30954046 original size:26 final size:26
Alignment explanation
Indices: 30954010--30954062 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30954000 CTCATCCGAT
*
30954010 CTTAGATTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
30954036 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
30954062 C
1 C
30954063 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:30955099 original size:26 final size:26
Alignment explanation
Indices: 30955070--30955122 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30955060 CCAGTCTGAT
*
30955070 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAAATCCATATG
*
30955096 CTTAGACATGGAATGAAATCCGTATG
1 CTTAGACATGGAATGAAATCCATATG
30955122 C
1 C
30955123 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCATATG
Found at i:30955933 original size:159 final size:158
Alignment explanation
Indices: 30955625--30956953 Score: 913
Period size: 159 Copynumber: 8.3 Consensus size: 158
30955615 CTTGCTACTG
* * **
30955625 CAACCCTCAGTTCCGGTCTGATCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
1 CAACCCTC-GGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * ** * * *
30955690 AACGAGAGTGTGGTTGCTCAGCCAGCCGGAGAGGCAGAATGTGCAAGCCGGGGACCGACCCGATC
65 AACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-
*
30955755 CCCCCTTGTGTGCTGTCGATCCTGCTGTCA
129 CCCCCTTGCGTGCTGTCGATCCTGCTGTCA
* *
30955785 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * ** * *
30955850 ACGAGCTTGAGGACGCT-AGGCCAGCTGGAGAGGCTTAATGCGCAAGCCTGGGATCGACCCTATC
66 ACGAGCGTGCGGGCGCTCA-GCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC
* * * *
30955914 CCCCTTTGCGTGCTATCGATCCCGCCGCCA
130 CCCC-TTGCGTGCTGTCGATCCTGCTGTCA
* * ** ** ** *
30955944 CAACCCTCGATCC-AGCTGGGGCTTAGACAT-GGAATGAACTCCCCACACCTAAGCCAACCTACG
1 CAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * * *** *
30956007 AAATGGGCGTGCGGGCACTCAGTCGGCCGGAAAGGTAGAATGCACAAGCCAAAGATCGGCCCGAT
64 AAACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT
* *
30956072 CCACCCCTGCGTGCTGTCGATCCTGCTGTCG
129 CC-CCCTTGCGTGCTGTCGATCCTGCTGTCA
* * * * *
30956103 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * *
30956168 ACGAGCGTGCGGGCGCTGAGCCAACCGAAAAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCC
66 ACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
* * * *
30956233 CTCTCTGCGTGCTGCCGGT-CTCGCTGCCA
131 CCCT-TGCGTGCTGTCGATCCT-GCTGTCA
* * * ** * * *
30956262 CAACTCTTC-GTCTG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCCAAGCCAACCCAT
1 CAAC-CCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * ** ** * *
30956324 GAAACGGGCGTGCGGGCGCTCAGCCAGCCGCAGAGGCAGAATGTGCAAGTCAAGGATCGGTCTGG
63 GAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
* * * **
30956389 TCCCCCCTACATGCTACCGATCCTACTGCTGGTCCTGCTA
128 TCCCCCTTGCGTGCTGTCGAT-C--CTGCT-G---T-C-A
* * * * * *
30956429 CTGCAACCCTCAGTCCG-TCCGATCTTAGATTGGGAATGAACTTCGTATGCCCAAGCCAACCCAT
1 ---CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * * *
30956493 GAAACGAGAGTGCGGGCGCTTAGCC-GATCGGAGAGGCAGAATGCGTAAGTCAGGGACCGATCCG
63 GAAACGAGCGTGCGGGCGCTCAGCCAG-CCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCG
*
30956557 ATCCCCCCTGCGTGCTGTCGATCCTGCTGTCA
127 ATCCCCCTTGCGTGCTGTCGATCCTGCTGTCA
*** * * * * * *
30956589 CATTTCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * * * * **
30956654 ATGAGCGTACGGGCGCTGAGCCGGTCAGAAAGGCATAATGCACAAGTCGGGGATCGGTCCGATCC
66 ACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
* * * * **
30956719 CCCTCTACATGCTGTCGGTCCCGCTACCA
131 CCCT-TGCGTGCTGTCGATCCTGCTGTCA
* * * ** * *
30956748 CAACCCTCGGTCTG-GCAGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATG
1 CAACCCTCGGTCCGATC-TGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * *
30956811 AAAC-AGGTGTGCGGGTGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATC-AGCCCG
64 AAACGA-GCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGA-CCCG
* * * *
30956874 GT-CCCCTCTGCGTGCTGTTGATCCTACTGTCG
127 ATCCCCCT-TGCGTGCTGTCGATCCTGCTGTCA
* ** *
30956906 CAACCCTCGGTCCGGTCTGATCACAGACTGGGAATGAACTCCATATGC
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
30956954 TTAGACTGCA
Statistics
Matches: 911, Mismatches: 220, Indels: 78
0.75 0.18 0.06
Matches are distributed among these distances:
157 10 0.01
158 183 0.20
159 562 0.62
160 20 0.02
161 4 0.00
162 4 0.00
165 1 0.00
166 6 0.01
167 1 0.00
168 3 0.00
169 108 0.12
170 9 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
CCCTTGCGTGCTGTCGATCCTGCTGTCA
Found at i:30957650 original size:26 final size:26
Alignment explanation
Indices: 30957612--30957664 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30957602 GGCTCAAAAT
30957612 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
30957638 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
30957664 C
1 C
30957665 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30957832 original size:26 final size:26
Alignment explanation
Indices: 30957796--30957848 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30957786 CCAGTCTGAT
*
30957796 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCATATG
* * *
30957822 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
30957848 C
1 C
30957849 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:30958202 original size:26 final size:26
Alignment explanation
Indices: 30958164--30958216 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30958154 TTGGTCTGAT
30958164 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
30958190 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
30958216 C
1 C
30958217 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:30958359 original size:184 final size:184
Alignment explanation
Indices: 30958005--30958374 Score: 429
Period size: 184 Copynumber: 2.0 Consensus size: 184
30957995 TCCGGCTGGG
* * * *
30958005 GCTTAGACATGGAATGAACTATGTATGCCTACGCCAACCCACGACACAAGTGTGCGGGCGATCAG
1 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGATCAG
* * * *
30958070 CCGACCGAAGAGGCAGAATGTTAAAGTCGGGGATCGACCCGATCACCCTTACGTGCTGCCAATCC
66 CCGACCGAAGAGGCAGAATGGTAAAGTCGGGGACCGACCCGATCACCCCTACGTGCTACCAATCC
* * * *
30958135 TACAGCCGCAACCTTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCAGTAT
131 TACAGCCGCAACCCTCGGTTCGGTCTAATCTTACACTGGGAATGAACTCAGTAT
* * ** *
30958189 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGATCAG
** * * * * * * * *
30958254 CCGGTCGGAGAGGCAGAATGCGT-AAGTCGGGGACCGGCCTGGTCCCTCCCTGCGTGCTATCGAT
66 CCGACCGAAGAGGCAGAATG-GTAAAGTCGGGGACCGACCCGATCAC-CCCTACGTGCTACCAAT
* * * *
30958318 CGTACTGCCGCAACCCTCGG-TCGGTCTAATCTTACACTGGGAATTAACTCCGTAT
129 CCTACAGCCGCAACCCTCGGTTCGGTCTAATCTTACACTGGGAATGAACTCAGTAT
30958373 GC
1 GC
30958375 CTAAGTCAAC
Statistics
Matches: 153, Mismatches: 31, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
184 123 0.80
185 30 0.20
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGATCAG
CCGACCGAAGAGGCAGAATGGTAAAGTCGGGGACCGACCCGATCACCCCTACGTGCTACCAATCC
TACAGCCGCAACCCTCGGTTCGGTCTAATCTTACACTGGGAATGAACTCAGTAT
Found at i:30958591 original size:159 final size:157
Alignment explanation
Indices: 30958189--30958635 Score: 443
Period size: 158 Copynumber: 2.8 Consensus size: 157
30958179 AACTCAGTAT
* *
30958189 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
30958254 CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGACCGGCCTGGTCCCTCC-CTGCGTGCTATC-GA
66 CCGGCCGGAGAGGCAGAATGCGTAAG-CCGGGATCGGCCCGGTCCC-CCTCTGCGTGCTGCCAG-
** * * *
30958317 TCGTACTGCCGCAACCCTCGGTCGGTCTAA
128 TCCCACTGCCACAACCCTCGATCGGACTAA
* * * * * *
30958347 TCTTACAC-TGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
30958411 ACCGGCCGGAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGT
65 GCCGGCCGGAGAGGCAGAATGCGTAAGCC-GGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAGT
* * * **
30958476 CCCGCTGCCACAACCCTCTATCTGACTGGG
129 CCCACTGCCACAACCCTCGATCGGACT-AA
* * * * *
30958506 GCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACGGGTGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * *
30958571 CCGACCAGAGAGGTAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCT-TGCATGCTGCTAGTC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCG-GGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAGTC
30958635 C
130 C
30958636 TGCTATCGCA
Statistics
Matches: 233, Mismatches: 49, Indels: 14
0.79 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 137 0.59
159 91 0.39
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAGTCC
CACTGCCACAACCCTCGATCGGACTAA
Found at i:30958694 original size:26 final size:26
Alignment explanation
Indices: 30958665--30958717 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30958655 CCGATCCGAT
30958665 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* * * *
30958691 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
30958717 C
1 C
30958718 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:30959070 original size:26 final size:25
Alignment explanation
Indices: 30959033--30959082 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
30959023 TGATCTGATC
30959033 TTAGACTGGAATGAACTCCGTATGT
1 TTAGACTGGAATGAACTCCGTATGT
30959058 TTAGACATGGAATGAACTCCGTATG
1 TTAGAC-TGGAATGAACTCCGTATG
30959083 CCTAAGCCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (25 bp):
TTAGACTGGAATGAACTCCGTATGT
Found at i:30959411 original size:868 final size:856
Alignment explanation
Indices: 30957637--30959668 Score: 2162
Period size: 868 Copynumber: 2.3 Consensus size: 856
30957627 AACTCCGTAT
* * **
30957637 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
30957702 CCTG-TCGGAGAGGCAGAATGCGCAAGTCGAGGATC-GACCCGGTCCCCCCTACGTGCTG-TCGA
66 CC-GACCGGAGAGGTAGAATGCGCAAGCCGAGGATCAG-CCCGGTCCCCCTTGCATGCTGCTAG-
* * *
30957764 TCCTGCTGCCGCAACCCTCAGTCC-AGTCTGATCTTAAACTGGGAAT-AAACTCCGTATGCTTAG
128 TCCTGCTGCCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAAA-TCCGTATGCTTAG
* * * *
30957827 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAAAGAGCGTTCGGGCGCTCAGCCGACC
191 AATGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCA----ACC
* * * * * * * * *
30957892 GGAAAGGCCGGCCGGAGAGGCATAATGTGCAAGTCGGGGATCATCTCGGTCCTCCTCTGCGTGCT
252 -G--A------CTGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCTCGATCCACCTCCGCGTACT
* * *
30957957 GTCGATCCTGCTACTGGTCCTGCTACCATAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGA
308 GTCGATCCCGCTACTGGCCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGA
* * * * * * *
30958022 ACTATGTATGCCTACGCCAACCCACGACACAAGTGTGCGGGCGATCAGCCGACCGAAGAGGCAGA
373 ACTACGTATGCCTAAGCCAACCCACAAAACAAGCGTCCGGGCGATCAACCGACCGAAGAGGCAGA
* * * * * * * * *
30958087 ATGTTAAAGTCGGGGATCGACCCGATCACCCTTACGTGCTGCCAATCCTACAGCCGCAACCTTCG
438 ATGGTAAAGCCGAGCATCAACCCGATCACCCCTACATGCTACCAATCCTACAGCCGCAACCCTCG
* *
30958152 GTTTGGTCTGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACATGGAATGAACTCCGTATGC
503 GTCTGATCTGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACATGGAATGAACTCCGTATGC
* * * * *
30958217 CTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTC
568 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGTC
* * * * *
30958282 GGGGACCGGCCTGGTCCCTCCCTGCGTGCTATCGATCGTACTGCCGCAACCCTCGGTCGGTCTAA
633 GGGGACCGACCTGGTCCCTCCCTACGTGCTATCGATCCTACTACCACAACCCTCGGTCGGTCTAA
* * * *
30958347 TCTTACACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAA
698 TCTTACACTAGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAA
* * *
30958412 CCGGCCGGAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTC
763 CCAGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCAGTC
* * * *
30958477 CCGCTGCCACAACCCTCTATCTGACTGGG
828 CCGCTACCACAACCCTCGATCAGACTAGG
* * * *
30958506 GCTTAGACATGGAATGAACTCCCTATGCCTT-AGCCAACCCACGAAACGGGTGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATG-CTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
30958570 GCCGACCAGAGAGGTAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTTGCATGCTGCTAGTC
65 GCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTTGCATGCTGCTAGTC
** * *
30958635 CTGCTATCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAATCCATATGCTTAGATTG
130 CTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAATCCGTATGCTTAGAATG
* *
30958700 GGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACTGGAG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACTGGAG
* *
30958765 AGGCAAAATGCGCAAGCCGGGGATCAGCTCGATTCACCTCCGCGTACTGTCGATCCCGCT-GTCG
260 AGGCAAAATGCGCAAGCCGGGGATCAGCTCGATCCACCTCCGCGTACTGTCGATCCCGCTACT-G
* * * *
30958829 GCCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
324 GCCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTACGTATGCCTAAG
* * * * * *
30958894 CCAACCCACAAAACGAGCGTCCGGGCGCTCAACCGGCTGGAGAGGTAGAATGCGT-AAGCCGAGC
389 CCAACCCACAAAACAAGCGTCCGGGCGATCAACCGACCGAAGAGGCAGAATG-GTAAAGCCGAGC
** * *
30958958 ATCAATTCGGT-ACCCCCTGCATGCTACCAATCTTGCTACAGGTCTTGCTACCGCAACCCTCGGT
453 ATCAACCCGATCA-CCCCTACATGCTACCAATC---CTACA------G---CCGCAACCCTCGGT
* *
30959022 CTGATCTGATCTTAGACT-GGAATGAACTCCGTATGTTTAGACATGGAATGAACTCCGTATGCCT
505 CTGATCTGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACATGGAATGAACTCCGTATGCCT
* * * * *
30959086 AAGCCAGCCCACGAAACGTGCGTGCGGGTGCTTAACCGGTCGAAGAGGCCA-AATGTGCAAGTCG
570 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGAAGAGG-CAGAATGCGCAAGTCG
* * **
30959150 GGGAGCGA-CTCGGTCCC-CGCCTACGTGCTGTCGATCCTGTTACCACAACCCTCGGTCCGGGTC
634 GGGACCGACCT-GGTCCCTC-CCTACGTGCTATCGATCCTACTACCACAACCCTCGGT-C-GGTC
* * * * **
30959213 -GATCTTAGACTAGGAATGAAATCCGTATGCCTAATTCAACCCACAAAATGAGCGTGCGGGTGCT
695 TAATCTTACACTAGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACT
* *
30959277 -AAGCCAGCTGGAGAGGCATAATGCGCAAGCC-GAGGATCGGCCCGATCCCCCTCTACGTGTTGC
760 GAA-CCAGCCGGAGAGGCATAATGCGCAAGCCAG-GGATCGGCCCGATCCCCCTCTACGTGCTGC
*
30959340 CGGTCCCG-TCACCACAACCCTCGATCCAG-CTAGG
823 CAGTCCCGCT-ACCACAACCCTCGAT-CAGACTAGG
30959374 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
30959439 CC-AGCCGGAGAGGTAGAATGCGCAAGCCGAGGACCAGCTCGATCGCCCCCTGCGTGCTATCGAT
66 CCGA-CCGGAGAGGTAGAATGCGCAAGCCGAGGATCAGCCCGGT--CCCCCT---TGC-AT-G--
** * * * *
30959503 CCTACTGCGGGTCCTACTGCCGCAACCCTCGGTCTGATGCGATCTTAGACTGGGAATGAACTCCG
121 ----CTGCTAGTCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAATCCG
** * * *
30959568 TATGCTTAGACAT-GAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGC
182 TATGCTTAGA-ATGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGC
* * * **
30959632 TCAGCCG-GTCGGAGAGGCAGAATGCATAAGCCGGGGA
246 TCAACCGACT-GGAGAGGCAAAATGCGCAAGCCGGGGA
30959669 CCAACCCGGT
Statistics
Matches: 970, Mismatches: 146, Indels: 82
0.81 0.12 0.07
Matches are distributed among these distances:
855 2 0.00
856 182 0.19
857 1 0.00
859 5 0.01
862 1 0.00
864 1 0.00
865 4 0.00
866 3 0.00
867 145 0.15
868 257 0.26
869 210 0.22
870 15 0.02
873 3 0.00
874 2 0.00
875 1 0.00
880 1 0.00
881 136 0.14
882 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (856 bp):
GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTTGCATGCTGCTAGTCC
TGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAATCCGTATGCTTAGAATGG
GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACTGGAGA
GGCAAAATGCGCAAGCCGGGGATCAGCTCGATCCACCTCCGCGTACTGTCGATCCCGCTACTGGC
CCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTACGTATGCCTAAGCC
AACCCACAAAACAAGCGTCCGGGCGATCAACCGACCGAAGAGGCAGAATGGTAAAGCCGAGCATC
AACCCGATCACCCCTACATGCTACCAATCCTACAGCCGCAACCCTCGGTCTGATCTGATCTTAGA
CTGGGAATGAACTCAGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCTGGTCCC
TCCCTACGTGCTATCGATCCTACTACCACAACCCTCGGTCGGTCTAATCTTACACTAGGAATGAA
ATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAACCAGCCGGAGAGGCATAA
TGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCAGTCCCGCTACCACAACCCTCG
ATCAGACTAGG
Found at i:30959482 original size:159 final size:156
Alignment explanation
Indices: 30959058--30959496 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 156
30959048 CTCCGTATGT
* *
30959058 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAACGTGCGTGCGGGTGCTTAA-C
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC-TAAGC
* * * * * * * * *
30959122 CGGTCGAAGAGGCCAAATGTGCAAGTCGGGGAGCGACTCGGTCCCCGCCTACGTGCTGTCGATCC
65 CAGCCGGAGAGG-CAAATGCGCAAGCCGAGGACCG-CTCGATCCCC-CCTACGTGCTGCCGATCC
* * * * * * *
30959187 TGTTACCACAACCCTCGGTCCGGGTCGATC
127 CGTCACCACAACCCTCGATCCAGCTAGAGC
* ** * *
30959217 TTAGAC-TAGGAATGAAATCCGTATGCCTAATTCAACCCACAAAATGAGCGTGCGGGTGCTAAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTAAGC
* * * * *
30959281 CAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGTTGCCGGTCC
65 CAGCCGGAGAGGCA-AATGCGCAAGCCGAGGA-CCGCTCGATCCCCC-CTACGTGCTGCCGATCC
*
30959346 CGTCACCACAACCCTCGATCCAGCTAGGGC
127 CGTCACCACAACCCTCGATCCAGCTAGAGC
* * *
30959376 TTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTAAGCC
* *
30959441 AGCCGGAGAGGTAGAATGCGCAAGCCGAGGACCAGCTCGATCGCCCCCTGCGTGCT
66 AGCCGGAGAGGCA-AATGCGCAAGCCGAGGACC-GCTCGATC-CCCCCTACGTGCT
30959497 ATCGATCCTA
Statistics
Matches: 228, Mismatches: 44, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
158 8 0.04
159 214 0.94
160 6 0.03
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTAAGCC
AGCCGGAGAGGCAAATGCGCAAGCCGAGGACCGCTCGATCCCCCCTACGTGCTGCCGATCCCGTC
ACCACAACCCTCGATCCAGCTAGAGC
Found at i:30959806 original size:514 final size:514
Alignment explanation
Indices: 30958691--30960135 Score: 1581
Period size: 514 Copynumber: 2.8 Consensus size: 514
30958681 AATCCATATG
* *
30958691 CTTAGATTGGGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGGCGCTCAA-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGGCGCT-AAG
* * *
30958755 CCGACTGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCTCGATTCACCTCCGCGTACTGTCGATC
65 CCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGA-TC-CCTCC-C-TAC-GT-GATG
* *
30958820 CCGCTGTCGGCCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGT
124 CCG--GTC--CCGT-CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGT
* * * * *
30958885 ATGCCTAAGCCAACCCACAAAACGAGCGTCCGGGCGCTCAACCGGCTGGAGAGGTAGAATGCGTA
184 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCA
* ** * * * * * * * * *
30958950 AGCCGAGCATCAATTCGGTACCCCCTGCATGCTACCAATCTTGCTACAGGTCTTGCTACCGCAAC
249 AGCCGAGGATCAGCTCGGTCCCCCCTGCGTGCTATCGATCCTACTGCAGGTCCTACTACCGCAAC
* *
30959015 CCTCGGTCTGATCTGATCTTAGACTGGAATGAACTCCGTATGTTTAGACATGGAATGAACTCCGT
314 CCTCGGTCTGATCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGT
* ** * * **
30959080 ATGCCTAAGCCAGCCCACGAAACGTGCGTGCGGGTGCTTAACCGGTCGAAGAGGCCAAATGTGCA
379 ATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAACCGGTCGAAGAGGCCAAATGCACA
* * * * * * *
30959145 AGTCGGGGAGCGACTCGGTCCCCGCCTACGTGCTGTCGATCCTGTTACCACAACCCTCGGTCCGG
444 AGCCGGGGACCAACCCGGTCCCCGCCTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCGA
30959210 GTCGAT
509 GTCGAT
* * ** * *
30959216 CTTAGACTAGGAATGAAATCCGTATGCCTAATTCAACCCACAAAATGAGCGTGCGGGTGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGGCGCTAAGC
* * *
30959281 C-AGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCC-CCTCTACGTGTTGCCGGT
66 CGA-CTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCTCC-CTACGTGATGCCGGT
* * * * *
30959344 CCCGTC-ACCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCTTAAGC
129 CCCGTCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* *
30959408 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGTAGAATGCGCAAGCCGAGGAC
194 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGAT
* * *
30959473 CAGCTCGATCGCCCCCTGCGTGCTATCGATCCTACTGCGGGTCCTACTGCCGCAACCCTCGGTCT
259 CAGCTCGGTC-CCCCCTGCGTGCTATCGATCCTACTGCAGGTCCTACTACCGCAACCCTCGGTCT
30959538 GATGC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTA
323 GAT-CTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTA
* * * *
30959602 AGCCAACCCATGAAACAAGCGTACGGGTGCTCAGCCGGTCGGAGAGG-CAGAATGCATAAGCCGG
386 AGCCAACCCACGAAACAAGCGTACGGGTGCTCAACCGGTCGAAGAGGCCA-AATGCACAAGCCGG
** * * * * *
30959666 GGACCAACCCGGTCCCC-CCTGTGTGCTGTTGATCCTGCTGCCACAACCTTCGATCTGATTCGAT
450 GGACCAACCCGGTCCCCGCCTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCGAGTCGAT
* * * * * *
30959730 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAACGAGTGGGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGGCGCTAAGC
* * * **
30959795 CGA-TCGGAGAGGCATAATGCGCAAGTCGGGGATTGGCTCGATCCCTCCCTACGTGCTGTAGG-C
66 CGACT-GGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCTCCCTACGTGATGCCGGTC
* *
30959858 CACG-CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGC
130 C-CGTCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
30959922 CAAACCATGAAACG-GTCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGTCGGGGA
194 CAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGA
* *
30959986 TC-GGTCCGGTCCCCTCTGCGTGCTATCGATCCTACTGCA-G------T-----AACCCTCGGTC
258 TCAGCT-CGGTCCCCCCTGCGTGCTATCGATCCTACTGCAGGTCCTACTACCGCAACCCTCGGTC
* * ** **
30960038 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACCA-GGGATGAACTTTGTATGCCT
322 TGATCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGA-CATGAAATGAACTCCGTATGCCT
* * * *
30960102 AAGTCAACCCACGAAACGAGCGTATGGATGCTCA
385 AAGCCAACCCACGAAACAAGCGTACGGGTGCTCA
30960136 GCCGACTAGG
Statistics
Matches: 783, Mismatches: 122, Indels: 54
0.82 0.13 0.06
Matches are distributed among these distances:
500 1 0.00
501 92 0.12
502 2 0.00
506 1 0.00
512 1 0.00
513 148 0.19
514 311 0.40
515 115 0.15
517 3 0.00
519 5 0.01
520 2 0.00
521 3 0.00
522 3 0.00
523 2 0.00
524 5 0.01
525 89 0.11
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (514 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGGCGCTAAGC
CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCTCCCTACGTGATGCCGGTCC
CGTCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCA
GCTCGGTCCCCCCTGCGTGCTATCGATCCTACTGCAGGTCCTACTACCGCAACCCTCGGTCTGAT
CTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACAAGCGTACGGGTGCTCAACCGGTCGAAGAGGCCAAATGCACAAGCCGGGGACCA
ACCCGGTCCCCGCCTACGTGCTGTCGATCCTGCTACCACAACCCTCGATCCGAGTCGAT
Found at i:30961165 original size:26 final size:26
Alignment explanation
Indices: 30961114--30961166 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30961104 CCGGTTCGAT
*
30961114 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACATCATATG
* * *
30961140 CTTAGACTGGGGATGTACATCGTATG
1 CTTAGACTGGGAATGAACATCATATG
30961166 C
1 C
30961167 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCATATG
Found at i:30961448 original size:196 final size:197
Alignment explanation
Indices: 30961103--30961469 Score: 452
Period size: 196 Copynumber: 1.9 Consensus size: 197
30961093 CAACCTTCGG
* * *
30961103 TCCGGTTCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGGATGTACATCGTATGCC
1 TCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACATCGTATGCC
** * * * * ** **
30961168 TAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGTAAGTCG
66 TAACCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCAAAAACCG
* * * * *
30961233 GGGATCAACCCGGT-CCCCCCTGCGTGCTGTTGATCCTGCTGTTAGTCCTGCTGTCGCAACCCTT
131 GGGACCAACCCGATCCCCCCCAGCGTGCTGTCGACCCTGCTGTTAGTCCTGCTGTCGCAACCCTT
30961297 GA
196 GA
* * *
30961299 TCCGGTTCGATCTTAGATTGGGAATGAACTCCGTATTCTTAGACAT-GGAATGAAC-TCCGTATG
1 TCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACAT-CGTATG
* * * * *
30961362 CCTAACCCAACCCACGAAACAAGCATGCGGGTGCTCAGCTGATCGAAGAGGCAGAATGTAAAAAC
64 CCTAACCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCAAAAAC
*
30961427 CGGGGACCGACCCGATCCCCCCCAGCGTGCTGTCGACCCTGCT
129 CGGGGACCAACCCGATCCCCCCCAGCGTGCTGTCGACCCTGCT
30961470 ACTGCAACCC
Statistics
Matches: 141, Mismatches: 27, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
195 1 0.01
196 116 0.82
197 24 0.17
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (197 bp):
TCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACATCGTATGCC
TAACCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCAAAAACCG
GGGACCAACCCGATCCCCCCCAGCGTGCTGTCGACCCTGCTGTTAGTCCTGCTGTCGCAACCCTT
GA
Found at i:30963444 original size:26 final size:26
Alignment explanation
Indices: 30963397--30963449 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30963387 CTGATTTGAT
* *
30963397 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAAATCCGTATG
* *
30963423 CTTAGACTGGGGATAAAATCCGTATG
1 CTTAGACTAGGAATAAAATCCGTATG
30963449 C
1 C
30963450 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAAATCCGTATG
Found at i:30963645 original size:26 final size:26
Alignment explanation
Indices: 30963607--30963659 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30963597 TCGATCCAAT
*
30963607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
30963633 CTTAGAC-GTGGAATGAACTCCCTATG
1 CTTAGACTG-GGAATGAACTCCCTATG
30963659 C
1 C
30963660 CTAAGCCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:30964137 original size:392 final size:391
Alignment explanation
Indices: 30963238--30964209 Score: 1205
Period size: 394 Copynumber: 2.5 Consensus size: 391
30963228 TCCGGCTGGG
*
30963238 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAC-GCTCAA
* * *
30963303 CTGACCGAAGAGGCAGAATACGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCATGCTATCGATCC
65 CCGACCAAAGAGGCAGAATACGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCGTGCTATCGATCC
* * *
30963368 TGCTGCCGCAACCCTCAATCTGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
130 TGCAG-CGCAACCCTCAATCTGGTTTGATCTTAGACTA-GAATGAACTTCGTATGCTTAGACTGG
* *
30963433 GGATAAAATCCGTATGCCTAAGTCAACTCATGAAACGAGCCTGCAGGCACTCAGCCGATCGGAGA
193 GGATAAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCACTCAGCCGATCGGAGA
*
30963498 GGCCGATCAAAGAGGTAGAATGCACAAATCGGGGATCAGCCCGATCCCCCCCTACGTGCTGGCGA
258 GGCCGATCAAAGAGGTAGAATGCACAAACCGGGGATCAGCCCGATCCCCCCCTACGTGCTGGCGA
* *
30963563 TCCTGCTACTGGTCCTACTGCCATAACCCTCAGTTCGATCCAATCTTAGACTGGGAATGAACTCC
323 TCCTGCTACTGGTCCTACTGCCATAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCC
30963628 GTAT
388 GTAT
* * *
30963632 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCGACCCATGAAACGGGCGTGCGACCGCTTAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGA-CGCTCAA
*** * * * *
30963697 CCGGTGAAAGAGGTAGAATACGCAAGCCGAGGATTGGCTC-GATCCCCCCTGCGTGCTGTCGATC
65 CCGACCAAAGAGGCAGAATACGCAAGCCGGGGATTGGCCCAG-TCCCCCCTGCGTGCTATCGATC
* * *
30963761 CTGCAGCTGCAACCGTCAGTCTGGTTTGATCTTAGACTAGATATGAACTTCGTTTGCTTAGACTG
129 CTGCAGC-GCAACCCTCAATCTGGTTTGATCTTAGACTAGA-ATGAACTTCGTATGCTTAGACTG
* * ** * *
30963826 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGC-GAGCGCTCAGCCGGTCGGA
192 GGGATAAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAG-GCACTCAGCCGATCGGA
* * * * * * * *
30963890 G-GGTCGGTCTAAGGGGTAGAATGCACAAGCCGGGGATCAGCCCGGT-CCCCCCTATGTGCTGTC
256 GAGGCCGATCAAAGAGGTAGAATGCACAAACCGGGGATCAGCCCGATCCCCCCCTACGTGCTGGC
** * * * *
30963953 GATCCTGCTACTGGTCCTGTTGCCGTAACCCTCGGTCCGATCCGATCTTAGATTAGGAATGAACT
321 GATCCTGCTACTGGTCCTACTGCCATAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACT
*
30964018 CTGTAT
386 CCGTAT
* * * * * * * * * *
30964024 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGTGTACAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-GACGCTCAA
* * * ** * *
30964089 CCAACCAAAGAGGCAGAATGCTCAAGCCGGGGACCGACCCAGTCCCCCCTGTGTGCTATCGATCC
65 CCGACCAAAGAGGCAGAATACGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCGTGCTATCGATCC
* * ** *
30964154 TGTTATCGCAACCCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
130 TG-CAGCGCAACCCTCAATCTGGTTTGATCTTAGACT-AGAATGAACTTCGTATGC
30964210 CTAAGTCAAC
Statistics
Matches: 488, Mismatches: 81, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
392 218 0.45
393 49 0.10
394 220 0.45
395 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (391 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACGCTCAAC
CGACCAAAGAGGCAGAATACGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCGTGCTATCGATCCT
GCAGCGCAACCCTCAATCTGGTTTGATCTTAGACTAGAATGAACTTCGTATGCTTAGACTGGGGA
TAAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCACTCAGCCGATCGGAGAGGC
CGATCAAAGAGGTAGAATGCACAAACCGGGGATCAGCCCGATCCCCCCCTACGTGCTGGCGATCC
TGCTACTGGTCCTACTGCCATAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTA
T
Found at i:30964528 original size:26 final size:26
Alignment explanation
Indices: 30964499--30964551 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30964489 CCGGTCTGAT
30964499 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
* * *
30964525 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
30964551 C
1 C
30964552 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:30964645 original size:342 final size:349
Alignment explanation
Indices: 30964183--30964919 Score: 789
Period size: 354 Copynumber: 2.1 Consensus size: 349
30964173 CTGGTCCGAT
** * *
30964183 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATTAAACGAGCATTCGGGAGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAAAAAACGAGCATGCAGGAGCTGAGC
* * * * **
30964248 CAATCGGAAAGGCATAATGCGCAAGTCGAGGGTTGGCCCGGTCCCCCTCTGCGTGC-T-A-TCGA
66 CAACCAGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCGTCACTCGA
*
30964310 T-C-CC-GCTGCCACAACCCTCGGTCC-GACTAGGGCTTAGATATGGAATGAACTCCCTATGCCT
131 TCCGCCTGCTGCCACAACCCTCGGTCCAG-CTAGGGCTTAGACATGGAATGAACTCCCTATGCCT
* ** * *
30964371 AAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCC-AGCCGGAGAGGCAGATTGCACAAGCCG
195 AAGCCAACCAATGAAACAAGCGTACGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCACAAGCCG
* * ** * * *
30964435 -GAGATCAGCCTTGT-TCCCCCTGTGTGCTACCGATCCTGCTGTCG-CACCCTAGGTCC-GGTCT
259 AG-GATCAGCC-GGTCCCCCCCTGCATGCTACCGATCCTGCTGTCGTAACCCTAGATCCAGTTC-
*
30964496 GATCTTAAACTGGGAATAAACTCCGTATG
321 GATCATAAACTGGGAATAAACTCCGTATG
* * * * *
30964525 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAAAAATGAGCATGCAGGCGCTTAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAAAAAACGAGCATGCAGGAGCTGAGC
* * * * * *
30964590 CAGCCAGAGAGGCATAATGCGTAAGCCGAGGATCATCCCGGTCCCCTTGTGCGTGCTGTCGATCT
66 CAACCAGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGC-GTC-A-CT
* * * *
30964655 CGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTTCGTA
128 CGAT-CC-G-CCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTA
* * * *
30964720 TGCCTAAGCCAACCAATGAAACAAGTGTACGGGTGCTCAGTCGACCGGAGAGGCAGAATGCGCAA
190 TGCCTAAGCCAACCAATGAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAA
* ** * *
30964785 GTCGAGGATCAGCCGGTCCCCCCCTGCATGCTGTCGATCCTGTTGTCGTAACCCTCGATCCAGTT
255 GCCGAGGATCAGCCGGTCCCCCCCTGCATGCTACCGATCCTGCTGTCGTAACCCTAGATCCAGTT
* * **
30964850 CGATCATAGACTGGGAATGAACTTTGTATG
320 CGATCATAAACTGGGAATAAACTCCGTATG
* *
30964880 CTTAGACAT-GGAATGAACTTCGTATGCCAAAGCCAACCCA
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCA
30964920 TGAAACAAGC
Statistics
Matches: 320, Mismatches: 56, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
342 100 0.31
344 1 0.00
346 1 0.00
348 4 0.01
350 1 0.00
353 4 0.01
354 135 0.42
355 70 0.22
356 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (349 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAAAAAACGAGCATGCAGGAGCTGAGC
CAACCAGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCGTCACTCGA
TCCGCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCAATGAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGAG
GATCAGCCGGTCCCCCCCTGCATGCTACCGATCCTGCTGTCGTAACCCTAGATCCAGTTCGATCA
TAAACTGGGAATAAACTCCGTATG
Found at i:30965008 original size:184 final size:184
Alignment explanation
Indices: 30964695--30965056 Score: 476
Period size: 184 Copynumber: 2.0 Consensus size: 184
30964685 TCCAGCTGGG
* * *
30964695 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAACAAGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCAAAGCCAACCAATGAAACAAGCGTACGGGCGCTCAG
* * * * * *
30964760 TCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCGGTCCCCCCCTGCATGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCGATCCCCCCCTGCATGCTATCGATCC
* * * * *
30964825 TGTTGTCGTAACCCTCGATCCAGTTC-GATCATAGACTGGGAATGAACTTTGTAT
131 TGCTGCCGCAACCCTCAAT-CAGGTCTGATCATAGACTGGGAATGAACTTTGTAT
* **
30964879 GCTTAGACATGGAATGAACTTCGTATGCCAAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCAAAGCCAACCAATGAAACAAGCGTACGGGCGCTCAG
** * **
30964944 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGACCAGCCCGAT-CCCCCCTGTGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGACCAG-CCGATCCCCCCCTGCATGCTATCGATC
* *
30965008 CTGCTGCCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACT
130 CTGCTGCCGCAACCCTCAATCAGGTCTGATCATAGACTGGGAATGAACT
30965057 CCGTATGCAT
Statistics
Matches: 152, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
183 4 0.03
184 144 0.95
185 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTTCGTATGCCAAAGCCAACCAATGAAACAAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCGATCCCCCCCTGCATGCTATCGATCC
TGCTGCCGCAACCCTCAATCAGGTCTGATCATAGACTGGGAATGAACTTTGTAT
Found at i:30965016 original size:354 final size:353
Alignment explanation
Indices: 30964314--30965016 Score: 774
Period size: 354 Copynumber: 2.0 Consensus size: 353
30964304 TATCGATCCC
*
30964314 GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* ** * *
30964379 CCATGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGATTGCACAAGCCGGAGATCAGC
66 CAATGAAACAAGCGTACGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCGGAGATCAGC
* * ** * * *
30964444 CTTGTTCCCCCTGTGTGCTACCGATCCTGCTGTCGCACCCTAGGTCCGGTCTGATCTTAAACTGG
131 CTGGTCCCCCCTGCATGCTACCGATCCTGCTGTCGAACCCTAGATCCGGTCTGATCATAAACTGG
* * * **
30964509 GAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAAAAATGAG
196 GAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCAAAAAACAAG
* * ** * * * *
30964574 CATGCAGGCGCTTAGCCAGCCAGAGAGGCATAATGCGTAAGCCGAGGATCATCCCGGTCCCCTTG
261 CATGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGATCCCCCTG
*
30964639 TGCGTGCTGTCGATCTCGCTGCCGGTCCT
326 T-CGTGCTATCGATCTCGCTGCCGGTCCT
* * *
30964668 GCTGCCACAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTCCGA-CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
30964732 CCAATGAAACAAGTGTACGGGTGCTCAGTC-GACCGGAGAGGCAGAATGCGCAAGTC-GAGGATC
65 CCAATGAAACAAGCGTACGGGCGCTCAGCCAG-CCGGAGAGGCAGAATGCACAAGCCGGA-GATC
** * * *
30964795 AGCC-GGTCCCCCCCTGCATGCTGTCGATCCTGTTGTCGTAACCCTCGATCCAGT-TCGATCATA
128 AGCCTGGT-CCCCCCTGCATGCTACCGATCCTGCTGTCG-AACCCTAGATCCGGTCT-GATCATA
* * ** * **
30964858 GACTGGGAATGAACTTTGTATGCTTAGACAT-GGAATGAACTTCGTATGCCAAAGCCAACCCATG
190 AACTGGGAATAAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAACCCAAA
* ** * * * *
30964922 AAACAAGCGTGTGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGACCAGCCCGAT
254 AAACAAGCATGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGAT
30964987 CCCCCCTGT-GTGCTATCGATC-CTGCTGCCG
319 -CCCCCTGTCGTGCTATCGATCTC-GCTGCCG
30965017 CAACCCTCAA
Statistics
Matches: 286, Mismatches: 54, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
353 7 0.02
354 153 0.53
355 118 0.41
356 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (353 bp):
GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CAATGAAACAAGCGTACGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCGGAGATCAGC
CTGGTCCCCCCTGCATGCTACCGATCCTGCTGTCGAACCCTAGATCCGGTCTGATCATAAACTGG
GAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCAAAAAACAAG
CATGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCGATCCCCCTG
TCGTGCTATCGATCTCGCTGCCGGTCCT
Found at i:30965642 original size:170 final size:170
Alignment explanation
Indices: 30965320--30965644 Score: 426
Period size: 170 Copynumber: 1.9 Consensus size: 170
30965310 CCTGCTGCCA
* * *
30965320 CAACCCTCGGTCCGACTAGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
1 CAACCCTCGGTCCGACTACGACTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAA
** * * * *
30965385 ACGAGCGTGTGGGCCCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCATCCC
66 ACGAGCGTGCAGGCACTCAGTAGGCCGGAGAGGCAGAATGCGCAAGCAGAGGATCGACCCATCCC
*
30965450 CCCTTGCGTGATGCCGATCCTGCTGCTGGTCCAGCTGTCG
131 CCCTTGCGTGATGCCAATCCTGCTGCTGGTCCAGCTGTCG
*
30965490 CAACCCTCGGTCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAACCAACCCACG
1 CAACCCTCGGTCCGACTACGA-CTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCACG
* *
30965553 AAACGAGCGTGCAGGCACTCAGTAGGCCGGAGAGGCAGAATGCGTAAGTCAG-GGATC-AGCTCG
64 AAACGAGCGTGCAGGCACTCAGTAGGCCGGAGAGGCAGAATGCGCAAG-CAGAGGATCGA-C-CC
* * *
30965616 GTCCCCCC-TGCGTGCTGTCAATCCTGCTG
126 ATCCCCCCTTGCGTGATGCCAATCCTGCTG
30965645 TCACAACTCT
Statistics
Matches: 134, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
169 5 0.04
170 119 0.89
171 10 0.07
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (170 bp):
CAACCCTCGGTCCGACTACGACTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAA
ACGAGCGTGCAGGCACTCAGTAGGCCGGAGAGGCAGAATGCGCAAGCAGAGGATCGACCCATCCC
CCCTTGCGTGATGCCAATCCTGCTGCTGGTCCAGCTGTCG
Found at i:30965778 original size:157 final size:159
Alignment explanation
Indices: 30965483--30965819 Score: 369
Period size: 157 Copynumber: 2.1 Consensus size: 159
30965473 TGCTGGTCCA
* *
30965483 GCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAAC
1 GCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAACCAAC
* * * * * * * *
30965548 CCACGAAACGAGCGTGCAGGCACTCAGTAGGCCGGAGAGGCAGAATGCGTAAGTCAGGGATCAGC
66 CCAAGAAACGAGCGTACAGGCACTCAGCAGGCCGAAAAGGCAGAATGCGCAAGCCAGGAATCAGC
* * *
30965613 TCGGTCCCC-CCTGCGTGCTGTCAATCCT
131 TCGATCCCCTCCTGCGTGCTGCCAATCCC
* * ***
30965641 GCTGTCACAACTCTCGGTCTGATCCGATCTTAGACT-GGAATGAACTACGTATGCCTAAGTTAAC
1 GCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAACCAAC
* * * * *
30965705 CCAAGAAACGAGCGTACGGGCGCTGAGCCA-GTCGAAAAGGCATAATGCGCAAGCC-GAGAATC-
66 CCAAGAAACGAGCGTACAGGCACTCAG-CAGGCCGAAAAGGCAGAATGCGCAAGCCAG-GAATCA
** *
30965767 GACTCGATCCCCTTTTGCGTGCTGCCAGTCCC
129 G-CTCGATCCCCTCCTGCGTGCTGCCAATCCC
*
30965799 GCTGCCACAACCCTCGGTCCG
1 GCTGTCACAACCCTCGGTCCG
30965820 GCTAGGGCTT
Statistics
Matches: 146, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
156 2 0.01
157 78 0.53
158 66 0.45
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAACCAAC
CCAAGAAACGAGCGTACAGGCACTCAGCAGGCCGAAAAGGCAGAATGCGCAAGCCAGGAATCAGC
TCGATCCCCTCCTGCGTGCTGCCAATCCC
Found at i:30967061 original size:159 final size:158
Alignment explanation
Indices: 30966808--30967142 Score: 388
Period size: 159 Copynumber: 2.1 Consensus size: 158
30966798 CCGTCCGATG
* * *
30966808 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCC
1 TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * *
30966873 GACCGAAGAGGCATAATGTACAAATCGGGGATC-AGCCCAATCCCCCTCTGCATGCTGCCTG-TC
66 GACCGAAGAGGCAGAATGCACAAACCGGGGATCGA-CCCAATCCCCC-CTACATGCTG-CTGATC
* *
30966936 CTGTTGCCACAACCCTCGGTCCGGCTGGGGC
128 CTGCTGCCACAACCCTCAGTCCGGCTGGGGC
* * *
30966967 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGC
1 TTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * ** * *
30967031 CGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGACCCTGTCCCTCCTACGTGCTGCTGATCCT
65 CGACCGAAGAGGCAGAATGCACAAACCGGGGATCGACCCAATCCCCCCTACATGCTGCTGATCCT
* ** **
30967096 GCTGCCACAACCCTCAGTCCAGCCCGATC
130 GCTGCCACAACCCTCAGTCCGGCTGGGGC
*
30967125 TTAGACTAGGAATGAACT
1 TTAGACTGGGAATGAACT
30967143 ACGTATGCTT
Statistics
Matches: 148, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
157 4 0.03
158 50 0.34
159 92 0.62
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GACCGAAGAGGCAGAATGCACAAACCGGGGATCGACCCAATCCCCCCTACATGCTGCTGATCCTG
CTGCCACAACCCTCAGTCCGGCTGGGGC
Found at i:30968572 original size:26 final size:26
Alignment explanation
Indices: 30968543--30968595 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30968533 CCAGTCCAAT
30968543 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
30968569 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
30968595 C
1 C
30968596 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:30969421 original size:26 final size:26
Alignment explanation
Indices: 30969392--30969444 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30969382 CCGGTCCGAT
30969392 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
30969418 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30969444 C
1 C
30969445 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30969923 original size:26 final size:26
Alignment explanation
Indices: 30969887--30969939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30969877 TCGGTCTGAT
30969887 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
30969913 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
30969939 C
1 C
30969940 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:30971104 original size:158 final size:157
Alignment explanation
Indices: 30970625--30971125 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 157
30970615 ACTCCATATG
* * *
30970625 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAA-GAGCGTGCGGGTGCTTA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCA-TAAAACGAGCGTGCGGGTGCTCA
** *
30970688 GCCGACCGGAGAGGCAGAATGCGCAAG-TCGGGGATC-AGCCCGATCCCCCCTGTGTGCTGTCGA
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGA
* *
30970751 TCCTGCTGCCACAACCCTCCGTCCGGTCCGAT
127 TCCTGCTACCACAACCCT-CGTCCGGTCAGAT
* * * * * * * *
30970783 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGTGTCCGGGAGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAGC
** * * * * * * *
30970848 CGGTCGGAGAGTTATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGGGTGCTGCCGGTCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCC
* * * * **
30970913 CGCTACCACAACCCTCGGCCCGACAGGG
130 TGCTACCACAACCCTCGTCCGGTCAGAT
* * * *
30970941 GTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGTGCTCAT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAG
* * * * *
30971005 CGGGTCGAAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* ** * *
30971070 TACTACCGTAACTCTCAGTCCGGTCTGAT
130 TGCTACCACAACCCTC-GTCCGGTCAGAT
30971099 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
30971126 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 66, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 28 0.10
158 212 0.79
159 29 0.11
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGTCCGGTCAGAT
Found at i:30971177 original size:26 final size:26
Alignment explanation
Indices: 30971099--30971167 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
30971089 CCGGTCTGAT
*
30971099 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
30971125 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
30971151 CTTAGACTGGGGATGAA
1 CTTAGACTGGGGATGAA
30971168 AGCTGTATGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:30971535 original size:26 final size:26
Alignment explanation
Indices: 30971506--30971558 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30971496 CCGGTCCGAT
30971506 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
30971532 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30971558 C
1 C
30971559 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Done.