Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 336 of 402
Found at i:30971831 original size:158 final size:156
Alignment explanation
Indices: 30971532--30972032 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 156
30971522 ACTCCGTATG
* * *
30971532 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCC-AAGCCAACCCACAAAACAAGCGTACGGGTGCTAAAC
* * * * * * *
30971597 CGGTCGGAGAGGCAGAATGTGCAAGTCGAGGATTGGCCCAGTCCCCCCTGCGTGCTATCAATCCT
65 CGATCGGAGAGGCAAAATG-CCAAGTCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCCT
* *
30971662 GCTGTCGCAACCCTCGGTCCGATCTGAT
129 GCTGCCCCAACCCTCGGTCCGATCTGAT
* * * *
30971690 CTTAGAC-TGGGAATGAACTCCGTATGCCAAGTCAACCCACAAAACAAGCGTACGGGCGCTGAGC
1 CTTAGACAT-GGAATGAACTCCGTATGCCAAGCCAACCCACAAAACAAGCGTACGGGTGCTAAAC
* * * * * * * *
30971754 CGATCGAAGAGGCATAATGCCAAAGCCGTGGATCGACCAACTCCCCCTCTGCGTGCTGCCGGTCC
65 CGATCGGAGAGGCAAAATGCC-AAGTCGAGGATCGACCCAGTCCCCC-CTGCGTGCTACCGATCC
* * **
30971819 CGCTGCCCCAACCCTTGGTCCGAT-TGGGG
128 TGCTGCCCCAACCCTCGGTCCGATCT-GAT
* * * * * ** * *
30971848 GTTAGACATGGAATGAACTCCCTACGACTAAGCCCACCCACAAAACGGGCGTATGGGTGCCAAAC
1 CTTAGACATGGAATGAACTCCGTATG-CCAAGCCAACCCACAAAACAAGCGTACGGGTGCTAAAC
* * *
30971913 CGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCT
65 CGATCGGAGAGGCAAAATGC-CAAGTCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCCT
*
30971978 GCTGCCGCC-ATCCTCGGTCC-AGTCTGAT
129 GCTGCC-CCAACCCTCGGTCCGA-TCTGAT
30972006 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30972033 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 57, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 70 0.25
158 134 0.49
159 69 0.25
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCAAGCCAACCCACAAAACAAGCGTACGGGTGCTAAACC
GATCGGAGAGGCAAAATGCCAAGTCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCCTGC
TGCCCCAACCCTCGGTCCGATCTGAT
Found at i:30972042 original size:26 final size:26
Alignment explanation
Indices: 30972006--30972058 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30971996 CCAGTCTGAT
30972006 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30972032 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30972058 C
1 C
30972059 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30972701 original size:26 final size:26
Alignment explanation
Indices: 30972663--30972715 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30972653 TCGGTCCAAT
*
30972663 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30972689 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30972715 C
1 C
30972716 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30973242 original size:159 final size:159
Alignment explanation
Indices: 30972689--30973297 Score: 536
Period size: 159 Copynumber: 3.8 Consensus size: 159
30972679 ACTCTGTATG
* * *
30972689 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTA-CACAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCAG
* * * * * * * **
30972753 CCGGTCGGAGAGGCAGAATGTGCAA-CC-AGGGATCGGCCC-GATCCCCCCTACGTAATATCGAT
65 CCGGTCGGAAAGGCAGAATGCGCAAGCCGA-GGATCAGCCCGGTTCCCCTCTGCATGCTATCGAT
* * * * *
30972815 TCTTCTACCGCAACCATC-AGTCCGGTTTGAT
129 CCTGCTACCGCAACCCTCGA-TCCGATCTGAT
* * * * * *
30972846 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
* * * * * * * *
30972911 AGATCGAAAAGGC-GTAATACGCAAGCCG-GGTATCAGCCCGGTCCCCCTCAGCATGCTACCGGT
66 CGGTCGGAAAGGCAG-AATGCGCAAGCCGAGG-ATCAGCCCGGTTCCCCTCTGCATGCTATCGAT
* * ** **
30972974 CCCGCTGCAACAACCCTCGATCCGA-CTGGGG
129 CCTGCTACCGCAACCCTCGATCCGATCT-GAT
* * * * * * *
30973005 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCTGGTGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
* * * * *
30973070 CGGTCGGAAAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTTCCCCTCTGCGTGTTGTCGATCC
66 CGGTCGGAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTTCCCCTCTGCATGCTATCGATCC
*
30973135 TGCTATCGCAACCCTCGATCCGATCTGAT
131 TGCTACCGCAACCCTCGATCCGATCTGAT
* *
30973164 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGAGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * * * * *
30973228 CCTGCCGGAGAGGCATAATGCGCAAGCTGGGGATCAACCCGG-TCCCCTTCTGCATGCTGTCGAT
65 CCGGTCGGAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTTCCCC-TCTGCATGCTATCGAT
30973292 CCTGCT
129 CCTGCT
30973298 GCCGGTCCTG
Statistics
Matches: 352, Mismatches: 87, Indels: 24
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 73 0.21
158 16 0.05
159 256 0.73
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
CGGTCGGAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTTCCCCTCTGCATGCTATCGATCC
TGCTACCGCAACCCTCGATCCGATCTGAT
Found at i:30973435 original size:330 final size:317
Alignment explanation
Indices: 30972688--30973453 Score: 842
Period size: 318 Copynumber: 2.4 Consensus size: 317
30972678 AACTCTGTAT
* * * * * *
30972688 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTACACAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCTCAG
* * * * * * *
30972753 CCGGTCGGAGAGGCAGAATGTGCAA-CCAGGGATCGGCCCGATCCCCCCTACGTAATATCGATTC
66 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGATATCGATCC
* * * *
30972817 TTCTACCGCAACCATCAGTCCGGTTTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTACCGCAACCATCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
30972882 CCCATGAAACGAGCGTGCGGGCGCTGAGTAGATCGAAAAGGCGTAATACGCAAGCCGGGTATCAG
196 CCCACGAAACGAGCGTGCGAGAGCTCAGTAGACCGAAAAGGCATAATACGCAAGCCGGGGATCAA
* *
30972947 CCCGGTCCCCCTCAGCATGCTACCGGTCCCGCTGCAACAACCCTCGATCCGACTGGG
261 CCCGGTCCCCCTCAGCATGCTACCGGTCCCGCTACAACAACCCTAGATCCGACTGGG
* *
30973004 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCTGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCTCAG
* * * * * *
30973069 -TCGGTCGGAAAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTTCCCCTCTGCGTGTTGTCGAT
66 CT-GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGG-TCCCCCCTGCGTGATATCGAT
* *
30973133 CCTGCTATCGCAACCCTC-GATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
129 CCTGCTACCGCAACCATCAG-TCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * *
30973197 CAACCCACGAAACGAGCGTGCGAGAGCTCAGCCT-G-CCGGAGAGGCATAATGCGCAAGCTGGGG
193 CAACCCACGAAACGAGCGTGCGAGAGCTCAG--TAGACCGAAAAGGCATAATACGCAAGCCGGGG
* * *
30973260 ATCAACCCGGTCCCCTTCTGCATGCTGTCGATCCTGCTGCCGGTCCTGCTACCACAACCCTTAG-
256 ATCAACCCGGTCCCC--CT-CA----G-C-A---TGCTACCGGTCCCGCTACAACAACCC-TAGA
* *
30973324 TTCGGCTGGG
308 TCCGACTGGG
* * *
30973334 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCTCAG
* ** **
30973399 CTGGTCGGAGAGGCAGAATGCGTAAGTTGGGGATCGGTTCGGTCCCCCCTGCGTG
66 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTG
30973454 CAACGGTAAC
Statistics
Matches: 371, Mismatches: 59, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
316 78 0.21
317 14 0.04
318 133 0.36
319 1 0.00
320 3 0.01
321 2 0.01
325 1 0.00
326 1 0.00
327 1 0.00
329 12 0.03
330 122 0.33
331 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCTCAG
CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGATATCGATCC
TGCTACCGCAACCATCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGAGAGCTCAGTAGACCGAAAAGGCATAATACGCAAGCCGGGGATCAA
CCCGGTCCCCCTCAGCATGCTACCGGTCCCGCTACAACAACCCTAGATCCGACTGGG
Found at i:30973510 original size:26 final size:26
Alignment explanation
Indices: 30973481--30973533 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30973471 CCGATCCGAT
*
30973481 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30973507 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30973533 C
1 C
30973534 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30974790 original size:159 final size:157
Alignment explanation
Indices: 30974395--30974812 Score: 384
Period size: 159 Copynumber: 2.6 Consensus size: 157
30974385 TGAACTCTGT
* * *
30974395 ATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA-CTAGGAAACGAGCGTGCGGGCGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
** **
30974459 AGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATTTCCCCTACATGCTGTCGAT
66 AGCCGGCC-GAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCCCTACATGCTACCGAT
* *
30974524 CCTGCTGCCATAATCCTCAGTCTGGTCCA
130 CCCGCTGCCACAATCCTCA-TCTGGTCCA
* * * * * * * *
30974553 AT-TTTAGA-TTGAGAATAAACTCCGTGTGCCTAAGTCAACCCAC-AGAACGAGCGTACAGGCAC
1 ATGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGAGCGTGCGGGCGC
* * * * ** * *
30974615 TAAGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGTATCGACTCGGTCCCCCTCTGCGTGCTACC
64 TCAGCCGGCCG-AGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCC-CTACATGCTACC
30974680 GATCCCGCTGCCACAA-CC-C-T-TGGTCCA
127 GATCCCGCTGCCACAATCCTCATCTGGTCCA
* *
30974707 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGC
1 A-T---GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
30974772 GCTCAGCTGACCAGAGAGGTAGAATGCACAAGCCGAGGATC
62 GCTCAGCCGGCC-GAGAGGCAGAATGCGCAAGTCGGGGATC
30974813 AGCCTGATCC
Statistics
Matches: 203, Mismatches: 44, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
154 8 0.04
155 2 0.01
156 2 0.01
157 30 0.15
158 62 0.31
159 95 0.47
160 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCCCTACATGCTACCGATC
CCGCTGCCACAATCCTCATCTGGTCCA
Found at i:30975246 original size:514 final size:507
Alignment explanation
Indices: 30974201--30975476 Score: 1543
Period size: 514 Copynumber: 2.5 Consensus size: 507
30974191 TGGCTTAAAA
* * *
30974201 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCCCTCA
1 TCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
* * *
30974265 ACCGATCAGGGAGGTAG-ATGCGCAAACCGGGGATCGACCCGATCCCCCCCTTCATGCTGTCGAT
65 ACCGATCAGAGAGGTAGAATGCGCAAGCCGAGGATCG-CCCGAT-CCCCCC-TC-TGC-G-CGAT
* * * * ** *
30974329 CCTACTACTGGTCCTGCTATCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTG
124 CCTGCTATTGGTCCTGCTGTCGCAACCCTCGTTCCAGTCCGATCTTAGACTGGGAATGAACTC-G
* * * * *
30974394 TATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA-CTAGGAAACGAGCGTGCGGGCGCT
188 TATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT
* * * **
30974458 CAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATTTCCCCTACATGCTGTCGA
253 CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCCTACATGCTGTCGA
* * * * * **
30974523 TCCTGCTGCCATAATCCTCAGTCTGGTCCAATTTTAGATTGAGAATAAACTCCGTGTGCCTAAGT
318 TCCTGCTACCATAACCCTCAGTCCGGTCCAATCTTAGACTGAGAATAAACTCCGTAAGCCTAAGT
* * ** * * * *
30974588 CAACCCACAGAACGAGCGTACAGGCACTAAGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGTAT
383 CAACCCACAAAAAGAGCGTACAAACACTAAGCCGACCGAAGAGGCATAATACGCAAGCCGGGGAT
* * * *
30974653 CGACTCGGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTTGGTCCAACTGGG
448 CGACTCGGTCCCCCTCTGCGTGCTACCAATCCCGCAGCCACAACCCTCGATCCAACTGGG
* * * *
30974713 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 TCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAA
* * * *
30974778 CTGACCAGAGAGGTAGAATGCACAAGCCGAGGATCAGCCTGATCCCCCCTGCGTGCGGCCGATCC
66 CCGATCAGAGAGGTAGAATGCGCAAGCCGAGGATC-GCCCGATCCCCCCT-C-TGC-G-CGATCC
*
30974843 TGCTATTGGTCCTGCTGTCGCAACTCTCGTTCCAGTCCGATCTTAGACTGGGAATGAACTACGTA
126 TGCTATTGGTCCTGCTGTCGCAACCCTCGTTCCAGTCCGATCTTAGACTGGGAATGAACT-CGTA
30974908 TGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
190 TGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* *
30974973 GCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCCCACCTACATGCTGTCGAT
255 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCC-CCTACATGCTGTCGAT
* * * * * *
30975038 CCTGCTATCGTAACCCTCAGTCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTAAGCCTAAGTC
319 CCTGCTACCATAACCCTCAGTCCGGTCCAATCTTAGACTGAGAATAAACTCCGTAAGCCTAAGTC
* ** * * * *
30975103 AACCCACAAAAAGAGCGTGCAAATGCTGAGCCGACCGGAGAGGCATATTATGCAAGCCGGGGATC
384 AACCCACAAAAAGAGCGTACAAACACTAAGCCGACCGAAGAGGCATAATACGCAAGCCGGGGATC
* **
30975168 GACTCGGTCCCCCTCTGCGTGCTACCAATCCCGCAGCCACAACCCTCGATTCGGCTGGG
449 GACTCGGTCCCCCTCTGCGTGCTACCAATCCCGCAGCCACAACCCTCGATCCAACTGGG
* *
30975227 TCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
1 TCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAA
* * *
30975292 CCGATCAGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGT-CCCCCT-T--GCG----TGCT
66 CCGATCAGAGAGGTAGAATGCGCAAGCCGAGGATC-GCCCGATCCCCCCTCTGCGCGATCCTGCT
* * * * *
30975349 ATCGATCCTGCTGTCGCAACCCTCGGTT-CAGTCTGATCTTATACTGGGAATGAACTCCATATGC
130 ATTGGTCCTGCTGTCGCAACCCTC-GTTCCAGTCCGATCTTAGACTGGGAATGAACT-CGTATGC
* * * *
30975413 TTAGAC-TGAGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCACTCAGC
193 TTAGACAT-AGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
30975477 TGGCCCCCCC
Statistics
Matches: 658, Mismatches: 97, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
501 1 0.00
502 115 0.17
503 3 0.00
506 2 0.00
507 1 0.00
510 1 0.00
511 1 0.00
512 177 0.27
513 92 0.14
514 265 0.40
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (507 bp):
TCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAA
CCGATCAGAGAGGTAGAATGCGCAAGCCGAGGATCGCCCGATCCCCCCTCTGCGCGATCCTGCTA
TTGGTCCTGCTGTCGCAACCCTCGTTCCAGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTA
GACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGAC
CGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCCTACATGCTGTCGATCCTGCTA
CCATAACCCTCAGTCCGGTCCAATCTTAGACTGAGAATAAACTCCGTAAGCCTAAGTCAACCCAC
AAAAAGAGCGTACAAACACTAAGCCGACCGAAGAGGCATAATACGCAAGCCGGGGATCGACTCGG
TCCCCCTCTGCGTGCTACCAATCCCGCAGCCACAACCCTCGATCCAACTGGG
Found at i:30976231 original size:26 final size:26
Alignment explanation
Indices: 30976202--30976251 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30976192 GTCCGATCTG
30976202 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
30976228 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
30976252 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:30976838 original size:26 final size:26
Alignment explanation
Indices: 30976800--30976852 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30976790 GGCTCAAAAT
*
30976800 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
30976826 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30976852 C
1 C
30976853 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30977221 original size:159 final size:159
Alignment explanation
Indices: 30976825--30977209 Score: 440
Period size: 159 Copynumber: 2.4 Consensus size: 159
30976815 AACTCCGTAT
* *
30976825 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCG-GCGCTCAG
* * * *
30976890 CCGATCAGAGA-GATAGAATGCGCAAGCCGGGGATCAGCCCGACTGCCCCCTGCGTGCTGTCGAT
65 CCGATCAGAGAGGCTAGAATGCGCAAGCCGGGGATCAACCCGACTCCCCCCTACGTGCTGTCGAT
** * **
30976954 CGTGCTACCGCAACCCTCGGTCTGGTCCAA
130 CCCGCTACCACAACCCTCGGTCTGAACCAA
* ** * * * *
30976984 TCTTAGAC-TGGGAATGAACTCTGTACGTCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCTCA
*
30977048 GCCGATCAGAGAGGCT-TAATGCGCAAGCCGGGGATCAACCCGA-TCCCCCTCTACGTGCTGTC-
64 GCCGATCAGAGAGGCTAGAATGCGCAAGCCGGGGATCAACCCGACTCCCCC-CTACGTGCTGTCG
* * *
30977110 AGTCCCGCTACCACAACCGTCGGTC-GAACTGAG
128 A-TCCCGCTACCACAACCCTCGGTCTGAAC-CAA
* * *
30977143 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGG-CGCTCAG
30977208 CC
65 CC
30977210 TGCCGGAGAG
Statistics
Matches: 187, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
158 11 0.06
159 172 0.92
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTCAGC
CGATCAGAGAGGCTAGAATGCGCAAGCCGGGGATCAACCCGACTCCCCCCTACGTGCTGTCGATC
CCGCTACCACAACCCTCGGTCTGAACCAA
Found at i:30977343 original size:26 final size:26
Alignment explanation
Indices: 30977304--30977354 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30977294 ATTCTAATCC
*
30977304 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCCTATGCT
*
30977330 TAGACTGGGGATGAACTCCCTATGC
1 TAGACTGGGAATGAACTCCCTATGC
30977355 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCCTATGCT
Found at i:30978167 original size:26 final size:26
Alignment explanation
Indices: 30978138--30978188 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30978128 AGTCTGATCA
*
30978138 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
30978164 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
30978189 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:30978514 original size:26 final size:26
Alignment explanation
Indices: 30978478--30978530 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30978468 CCGATCCGAT
*
30978478 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
30978504 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
30978530 C
1 C
30978531 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:30980397 original size:26 final size:26
Alignment explanation
Indices: 30980361--30980413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30980351 CCAGTTTGAT
30980361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
30980387 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30980413 C
1 C
30980414 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30981931 original size:158 final size:156
Alignment explanation
Indices: 30981451--30981951 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 156
30981441 ACTTCGTATA
30981451 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
30981515 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATTGACCCGGTCCCCCCTGTGTGCTGTCGA-TC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATTC
* * * *
30981579 ATGTTGCTGTAACCTTTGGTCCGTTTCAAT
130 -TGCTGCAG-AACCTTTGGTCCG-TCCGAT
* * * * * *
30981609 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
30981674 CGACC-GAGAGGCATAATATGCAAACCAGGCATCGGCCC-AGTCCCCCTCTACGTGCT-ACCAGT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGA-TCCCCC-CTACGTGCTGTCGA-T
* * * * * * **
30981736 CCCGCTGCCAGAACCCTCGGTCCGGCTGGGG
128 TCTGCTG-CAGAACCTTTGGTCCGTC-CGAT
* * * *
30981767 CTTAGACAT-GGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
30981831 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATTC
*
30981896 TGCTGTC-GCAACCTTTGGTCTGATCCGAT
130 TGCTG-CAG-AACCTTTGGTCCG-TCCGAT
* * *
30981925 CATAGACTGGGAGTGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
30981952 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 67, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
157 35 0.13
158 187 0.71
159 39 0.15
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATTCT
GCTGCAGAACCTTTGGTCCGTCCGAT
Found at i:30983020 original size:159 final size:157
Alignment explanation
Indices: 30982671--30983166 Score: 523
Period size: 158 Copynumber: 3.1 Consensus size: 157
30982661 AACTCCATGT
* *
30982671 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * *
30982736 TCGGTCAGAGAGGCAGAATACGCAAGTCAGGGATCAGCTCGGTGCCCCCTACGTGCTGTCGATCC
66 TCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCTCGGT-CCCCCTGCGTGCTGTCGATCC
* *** * *** *
30982801 TGCTACTGTAACCCTTGGTTTGGTTCGA
130 TGCTGCCACAACCCTCGGTCCAGCTCGA
* * ** * *
30982829 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAACGAGCCTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * *
30982893 GCCGGTCGGAGAGGTATAATGCGCAA-CCAGAGGATCGGCTCGGTCCCCCTTTGCGTGCTGCCGA
65 GTCGGTCGGAGAGGTAGAATGCGCAAGCCAG-GGATCGGCTCGGTCCCCC--TGCGTGCTGTCGA
* * *
30982957 TCCTGCTGCCACAGCCCTCGGTCCAGCTGGG
127 TCCTGCTGCCACAACCCTCGGTCCAGCTCGA
* * *
30982988 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * *
30983053 TCGGTTGGAGAGGTAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATTC
66 TCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCTCGGT-CCCCCTGCGTGCTGTCGATCC
*
30983118 TGCTGCCACAACCCTCGGTCTAG-TCTGA
130 TGCTGCCACAACCCTCGGTCCAGCTC-GA
*
30983146 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
30983167 TATATGCTTA
Statistics
Matches: 276, Mismatches: 53, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 11 0.04
158 140 0.51
159 116 0.42
160 9 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
TCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCAGCTCGA
Found at i:30983198 original size:26 final size:26
Alignment explanation
Indices: 30983147--30983199 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30983137 CTAGTCTGAT
* *
30983147 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACGGGGAATGAACTCCATATG
* *
30983173 CTTAGACGGGGGATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCATATG
30983199 C
1 C
30983200 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCATATG
Found at i:30983676 original size:507 final size:507
Alignment explanation
Indices: 30983037--30983957 Score: 1348
Period size: 507 Copynumber: 1.8 Consensus size: 507
30983027 CACGAAACGG
* * * * * * *
30983037 GCATGCGGGCGCTCAGTCGGTTGGAGAGGTAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCC
1 GCATGCGAGCGCTCAGTCGGTCGGAGAGGCAAAATACGCAACCTAGGGACCGACCCGATCCCCCC
*
30983102 TGTGTGCTGTCGATTCTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTC
66 TGTGTGCTGTCGATTCTGCTGCCACAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTC
*
30983167 TATATGCTTAGACGGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGAGTGCAGGCG
131 TATATGCTTAGACGGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGAGTGCAGGCG
*
30983232 CTCAGCCAGCCGGAGAGGCATAATGA-GCAAGCCGGGGATAAGCCCGGTCCCCCTCTGCATGCTG
196 CTCAGCCAGCCGGAGAGGCATAAT-ACGCAAGCCGGGGATAAGCCCGGTCCCCCTCTACATGCTG
* * * *
30983296 CCACAATCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
260 CCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * *
30983361 GAAATGAGCGTGCGGGCACTCAGCCGG-CAAGAGAGGTAGAATGCGCAAGCCAG-GGATCGGCTC
325 AAAATGAGCGTGCGGGCACTCAGCCGGTC-AGAGAGGCAGAATGCGCAAGCC-GCGGATCGGCCC
* *
30983424 GGTCCCTCCTACGTGCTACCTATCCTGTTACTGGTCCTACTGTCGCAACCCTCGGTCTGATCCGA
388 GGTCCCCCCTACGTGCTACCGATCCTGTTACTGGTCCTACTGTCGCAACCCTCGGTCTGATCCGA
30983489 TCTTAGACTGGGAATGAACTCCGTATGCTTTGACATGAACCCACAAAATGAGCGT
453 TCTTAGACTGGGAATGAACTCCGTATGCTTTGACATGAACCCACAAAATGAGCGT
* * * * * *
30983544 GCATGCGAGCGCTCAGTTGGTCGGAGAGGCAAAATACGTAACCTGGGGACCGGCTCGATCCCTCC
1 GCATGCGAGCGCTCAGTCGGTCGGAGAGGCAAAATACGCAACCTAGGGACCGACCCGATCCCCCC
* *
30983609 TGTGTGCTGTCGA-TCTTGCTGCCGCAATCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAAC
66 TGTGTGCTGTCGATTC-TGCTGCCACAACCCTCGGTCTAG-TCCGATCTTAGACTGGGAATGAAC
* ** * * *
30983672 TCTATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGTGCGTGCGGG
129 TCTATATGCTTAGACGGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGAGTGCAGG
* * * * ** *
30983737 CGCTCAGCCGGCCGGAGAGGCATAATACGTAAGCTGGGGATCAGCTTGGTCCCCCTCTACGTGCT
194 CGCTCAGCCAGCCGGAGAGGCATAATACGCAAGCCGGGGATAAGCCCGGTCCCCCTCTACATGCT
** * *
30983802 GCCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGACCTCTATATGCCTAAGCCAACCCA
259 GCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
* *
30983867 CAAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGCGGATCGGCCCG
324 CAAAATGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGCGGATCGGCCCG
30983932 GTCCCCCCTACGTGCTACCGATCCTG
389 GTCCCCCCTACGTGCTACCGATCCTG
30983958 CTACCGTAAC
Statistics
Matches: 363, Mismatches: 46, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
506 5 0.01
507 357 0.98
508 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (507 bp):
GCATGCGAGCGCTCAGTCGGTCGGAGAGGCAAAATACGCAACCTAGGGACCGACCCGATCCCCCC
TGTGTGCTGTCGATTCTGCTGCCACAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTC
TATATGCTTAGACGGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGAGTGCAGGCG
CTCAGCCAGCCGGAGAGGCATAATACGCAAGCCGGGGATAAGCCCGGTCCCCCTCTACATGCTGC
CACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACA
AAATGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCGCGGATCGGCCCGGT
CCCCCCTACGTGCTACCGATCCTGTTACTGGTCCTACTGTCGCAACCCTCGGTCTGATCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTTGACATGAACCCACAAAATGAGCGT
Found at i:30983690 original size:26 final size:26
Alignment explanation
Indices: 30983654--30983706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30983644 CTGATCCGAT
*
30983654 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30983680 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
30983706 C
1 C
30983707 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30984015 original size:26 final size:26
Alignment explanation
Indices: 30983986--30984036 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
30983976 CGGTCCGATC
30983986 TTAGACTGGGAATAAACTCCGTATGG
1 TTAGACTGGGAATAAACTCCGTATGG
* * *
30984012 TTAGATTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATAAACTCCGTATG
30984037 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGG
Found at i:30984460 original size:26 final size:26
Alignment explanation
Indices: 30984423--30984473 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30984413 AGTCTGATCT
30984423 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
* *
30984449 TAGACTGTGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
30984474 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:30984748 original size:158 final size:159
Alignment explanation
Indices: 30984449--30985043 Score: 569
Period size: 158 Copynumber: 3.8 Consensus size: 159
30984439 TCCGTATGCA
* * ** * * * *
30984449 TAGACTGTGAATGAACTCTGTATGCCTAAG-CTAACCCCCGAAACGAGCGTGCGGGCGCTCAGCC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAACTAGCGTACGGGCACTGAGCC
* * * * * * * * * * *
30984513 GGTCGGAGAGGTAGAAAGCACAAGTCGAGGA-CCAGCCCGATCCCCC-CTGCGTGCTGTCGATCC
65 GATCGAAGAGGCATAATGCCCAAGCCGGGGATCGA-CCCGGTCCCCCTCTACGTGCTGTCGATCC
*
30984576 TGTTACCACAACCCTCAGTCCGGTCTGATCT
129 TGCTACCACAACCCTCAGTCCGGTCTGATCT
* * * *
30984607 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACTAGCATTCGAGCACTGAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTACGGGCACTGAGCCG
* * * **
30984672 ATCGAAGAGGCAGAATGCTCAAGCCGGGGATCGACCCGGTCCCTCT-TGTGTGCTGTCGATCCTG
66 ATCGAAGAGGCATAATGCCCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCTG
* * * *
30984736 CTGCCATAACCCTCGGTCCGATCTGATCT
131 CTACCACAACCCTCAGTCCGGTCTGATCT
* *
30984765 TAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATG-AACTGAGCGTACGGGCGCTGAGCC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACT-AGCGTACGGGCACTGAGCC
* * * * *
30984829 -ATCCGAAGACGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGT-C
65 GAT-CGAAGAGGCATAATGCCCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCC
* **
30984892 TCGCTACCACAACCCTCAGTCC-GACTGGCGCT
129 T-GCTACCACAACCCTCAGTCCGGTCT-GATCT
* * ** * **
30984924 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCATTGATTC
1 TAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTACGGGCACTGAGCC
* * * * *
30984988 GATCGAAGAGGCATAATGCCCAAGCCGGGGACCGGCTCGGTCCCCCTATATGTGCT
65 GATCGAAGAGGCATAATGCCCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCT
30985044 ACCGGTCCCA
Statistics
Matches: 361, Mismatches: 65, Indels: 21
0.81 0.15 0.05
Matches are distributed among these distances:
157 6 0.02
158 220 0.61
159 129 0.36
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTACGGGCACTGAGCCG
ATCGAAGAGGCATAATGCCCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCTG
CTACCACAACCCTCAGTCCGGTCTGATCT
Found at i:30985050 original size:159 final size:155
Alignment explanation
Indices: 30984449--30985127 Score: 540
Period size: 158 Copynumber: 4.3 Consensus size: 155
30984439 TCCGTATGCA
* * * ** * * *
30984449 TAGACTGTGAATGAACTCTGTATGCCTAAGCTAACCCCCGAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTGA-CCG
* * * * * * * * * * * * ** * *
30984514 GTCGGAGAGGTAGAAAGCACAAGTCGAGGACCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGT
65 ATCGAAGAGGCATAATGCCCAAGCCGGGGATCGGCCCGGTCCCCCTTATGTGCTGTCGGTCC-GC
* *
30984579 TACCACAACCCTCAGTCCGGTCTGATCT
129 TACCACAACCCTCAGTCC-GACTGAGCT
* * * * * *
30984607 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACTAGCATTCGAGCACTGAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTGA-CCG
* * * * * *
30984672 ATCGAAGAGGCAGAATGCTCAAGCCGGGGATCGACCCGGTCCCTCTTGTGTGCTGTCGATCCTGC
65 ATCGAAGAGGCATAATGCCCAAGCCGGGGATCGGCCCGGTCCCCCTTATGTGCTGTCGGTCC-GC
* * * *
30984737 TGCCATAACCCTCGGTCCGATCTGATCT
129 TACCACAACCCTCAGTCCGA-CTGAGCT
* * *
30984765 TAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATG-AACTGAGCGTACGGGCGCTGAGCC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTACGGGCACTGA-CC
* * * *
30984829 -ATCCGAAGACGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCT
64 GAT-CGAAGAGGCATAATGCCCAAGCCGGGGATCGGCCCGGTCCCCCT-TATGTGCTGTCGGTC-
*
30984893 CGCTACCACAACCCTCAGTCCGACTGGCGCT
126 CGCTACCACAACCCTCAGTCCGACT-GAGCT
* * * *
30984924 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCATTGATTC
1 TAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTGA-CC
* * **
30984988 GATCGAAGAGGCATAATGCCCAAGCCGGGGACCGGCTCGGTCCCCCTATATGTGCTACCGGTCCC
64 GATCGAAGAGGCATAATGCCCAAGCCGGGGATCGGCCCGGTCCCCCT-TATGTGCTGTCGGT-CC
* * * * * *
30985053 ACTGCCACAACCTTCGGTCCGGCTAGGGCT
127 GCTACCACAACCCTCAGTCCGACT-GAGCT
* * * *
30985083 CAGACAT-GGAAT-AAGTTCTGTATGCCTAAGCCGACCCATGAAACG
1 TAGAC-TGGGAATGAA-CTCCGTATGCCTAAGCCAACCCATGAAACG
30985128 GGCATGCAAG
Statistics
Matches: 428, Mismatches: 82, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
157 6 0.01
158 219 0.51
159 195 0.46
160 8 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (155 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTGACCGA
TCGAAGAGGCATAATGCCCAAGCCGGGGATCGGCCCGGTCCCCCTTATGTGCTGTCGGTCCGCTA
CCACAACCCTCAGTCCGACTGAGCT
Found at i:30985155 original size:159 final size:159
Alignment explanation
Indices: 30984579--30985192 Score: 424
Period size: 159 Copynumber: 3.9 Consensus size: 159
30984569 TCGATCCTGT
* ** * * * *
30984579 TACCACAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAAC
1 TACCACAACCCTCAGTCC-GACTGGCGCTCAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
** * * * * *
30984642 CCATGAAACTAGCATTCGAGCACT-GAGCCGATCGAAGAGGCAGAATGCTCAAGCCGGGGATCGA
64 CCATGAAACGGGCATACAAGCA-TAGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGG
* ** ** * **
30984706 CCCGGTCCCTCT-TGTGTGCTGTCGATCCTGC
128 CCCGGTCCCCCTATACGTGCTACCGGTCCCAC
* * * ** * * * *
30984737 TGCCATAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAAC
1 TACCACAACCCTCAGTCCGA-CTGGCGCTCAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
* * ** * * *
30984800 CCATG-AACTGAGCGTACGGGCGCT-GAGCC-ATCCGAAGACGCATAATGCGCAAGCCGAGGATC
64 CCATGAAAC-GGGCATACAAGC-ATAGAGCCGAT-CGAAGAGGCATAATGCGCAAGCCGGGGATC
* ** * *
30984862 GGCCCGGTCCCCCTCTACGTGCTGTCGGTCTCGC
126 GGCCCGGTCCCCCTATACGTGCTACCGGTCCCAC
*
30984896 TACCACAACCCTCAGTCCGACTGGCGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TACCACAACCCTCAGTCCGACTGGCGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* ** * ** * * *
30984961 ATGAAACGGGCGTACGGGCATTGATTCGATCGAAGAGGCATAATGCCCAAGCCGGGGACCGGCTC
66 ATGAAACGGGCATACAAGCATAGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCC
*
30985026 GGTCCCCCTATATGTGCTACCGGTCCCAC
131 GGTCCCCCTATACGTGCTACCGGTCCCAC
* * * * * ** *
30985055 TGCCACAACCTTCGGTCCGGCTAGG-GCTCAGACATGGAAT-AAGTTCTGTATGCCTAAGCCGAC
1 TACCACAACCCTCAGTCCGACT-GGCGCTCAGACATGGAATGAA-CTCCCTATGCCTAAGCCAAC
* * * * * *
30985118 CCATGAAACGGGCATGCAAGCA-AGAGGCCGGTTGAAGAGGTAGAATGCGCAAGCTGGGGATCGG
64 CCATGAAACGGGCATACAAGCATAGA-GCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGG
*
30985182 CCCGATCCCCC
128 CCCGGTCCCCC
30985193 CTGCTTGTTG
Statistics
Matches: 373, Mismatches: 70, Indels: 25
0.80 0.15 0.05
Matches are distributed among these distances:
157 6 0.02
158 119 0.32
159 240 0.64
160 8 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
TACCACAACCCTCAGTCCGACTGGCGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ATGAAACGGGCATACAAGCATAGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCC
GGTCCCCCTATACGTGCTACCGGTCCCAC
Found at i:30985289 original size:26 final size:26
Alignment explanation
Indices: 30985251--30985303 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30985241 CCGGTCCTAT
*
30985251 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30985277 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30985303 C
1 C
30985304 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30985463 original size:26 final size:26
Alignment explanation
Indices: 30985434--30985486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30985424 CTGGTCCGAT
*
30985434 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30985460 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30985486 C
1 C
30985487 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30985807 original size:26 final size:26
Alignment explanation
Indices: 30985771--30985821 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30985761 AGTCCGATCA
*
30985771 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
30985797 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
30985822 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:30986140 original size:26 final size:26
Alignment explanation
Indices: 30986111--30986163 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30986101 CCGATCTGAT
30986111 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30986137 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30986163 C
1 C
30986164 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30986519 original size:25 final size:26
Alignment explanation
Indices: 30986491--30986542 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30986481 CCGATCCGAT
*
30986491 CTTAGAC-TTAAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
* *
30986516 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGAAATGAACTCCGTATG
30986542 C
1 C
30986543 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:30986715 original size:26 final size:26
Alignment explanation
Indices: 30986673--30986725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30986663 CTGGCTCGAT
30986673 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
30986699 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30986725 C
1 C
30986726 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:30986874 original size:183 final size:183
Alignment explanation
Indices: 30986501--30986882 Score: 412
Period size: 183 Copynumber: 2.1 Consensus size: 183
30986491 CTTAGACTTA
* *
30986501 AATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAACC
1 AATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAACC
* * *** * *
30986566 GTGCAGGCACTCAGCCGGTCGGAGAGGTAGAATGCGCAAACCGGGGACCGATCGGTCCCCCCTAC
66 GTGCAGGCACTCAGCCGATCGGACAACCAGAATGCGCAAACCGGGGACCGACCGATCCCCCCTAC
* * * * * *
30986631 ATGATGTCAATCCTGTTGCTGCAACCGTCGATCTGGCTCGATCTTAGACTGGG
131 ATGATGTCAATCCTGCTGCCGCAACCCTCGATCTGGCTCGATCATAGAATAGG
* * *
30986684 AATGAACTCCATATGCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC
1 AATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAACC
* * * * * * *
30986749 GTGCGGGCGCTCAGTCGATCGGACAACCAGAATTGC-CAAGCTGGGGATCGGCCCGATCCCCCCT
66 GTGCAGGCACTCAGCCGATCGGACAACCAGAA-TGCGCAAACCGGGGA-CCGACCGATCCCCCCT
* * ** * *
30986813 ACGTGCTGTTGATCCTGCTGCCGTAACCCTC-AGTCTGG-TCCGATCATAGAATATG
129 ACATGATGTCAATCCTGCTGCCGCAACCCTCGA-TCTGGCT-CGATCATAGAATAGG
*
30986868 -ATGAACTACATATGC
1 AATGAACTCCATATGC
30986883 CTAAGTCAAC
Statistics
Matches: 163, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
183 109 0.67
184 54 0.33
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (183 bp):
AATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAACC
GTGCAGGCACTCAGCCGATCGGACAACCAGAATGCGCAAACCGGGGACCGACCGATCCCCCCTAC
ATGATGTCAATCCTGCTGCCGCAACCCTCGATCTGGCTCGATCATAGAATAGG
Found at i:30987207 original size:25 final size:26
Alignment explanation
Indices: 30987173--30987224 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
30987163 CCGGTCCGAT
30987173 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30987198 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30987224 C
1 C
30987225 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30987932 original size:26 final size:26
Alignment explanation
Indices: 30987894--30987946 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30987884 GGCTCAAAAT
30987894 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
30987920 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
30987946 C
1 C
30987947 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:30988314 original size:159 final size:159
Alignment explanation
Indices: 30987919--30988346 Score: 452
Period size: 159 Copynumber: 2.7 Consensus size: 159
30987909 AACTCCGAAT
* *
30987919 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAG
* * ** **
30987984 CCAACCGGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTTTTGTCGATC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCGATC
* * *
30988049 CTGCTACCGTAACCCTCGGTTCGGTTCGA
131 CTGCTACCATAACCCTCGGTTCAGCTCGA
* * * * * * *
30988078 TCTGAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACTAGCGTGTGGGTGC-TA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTA
* * * * * * *
30988141 TGCCGATCGAAGAGGCATAATGCACAAACCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACC-A
65 -GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCGA
* * * *
30988205 GT-GTCGCTGCCATAACCCTCGG-TCTAGCTGGG
129 -TCCT-GCTACCATAACCCTCGGTTC-AGCTCGA
* * *
30988237 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAG
* * * *
30988302 TCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCC
30988347 TCTTACGTGC
Statistics
Matches: 214, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
158 6 0.03
159 205 0.96
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAG
CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCGATC
CTGCTACCATAACCCTCGGTTCAGCTCGA
Found at i:30989278 original size:159 final size:159
Alignment explanation
Indices: 30988565--30989392 Score: 522
Period size: 158 Copynumber: 5.2 Consensus size: 159
30988555 GTCGATCCTA
** * * * * *
30988565 CTGTCGGTCTTGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATG
1 CTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
* * * * * * **
30988630 CCTAAGCCAACCCACGAAATGAGCGTGTGAGAGCTCATCCGGCCGGAGAGGTAGAATGCATAAGC
66 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGC
* * *
30988695 C-GAGGATCGTA--TGGTCCCCCCTACGTGCTACCGATC
131 CAG-GGATCG-ACCCGAT-CCCCCT-C-TG----C-ATG
* ** ** * * ** *
30988731 CTACTACTGGTCCTACTGCCGTAACCCTCTGTCTGATCT-GATCTTAGAC-TGGGAATGAACTTC
1 CT-GT-C-GGTCCCGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTCC
* * ** * * * * **
30988794 ATATG-CTAA-CTTAACAAACGAAACAAGCGTGCGGGCGCTGAGCCGACTGGAGAGGCCTAATGC
61 CTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGC
** * * *
30988857 GCAAGTTAGGGATTGGCCCGGTCCCCCTCTGCATG
125 GCAAGCCAGGGATCGACCCGATCCCCCTCTGCATG
* * * *
30988892 CCGTCGGTCTCGCTGCCACAATCCGT-GGT-CGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 CTGTCGGTCCCGCTGCCACAA-CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * ** * *
30988955 GCCTAAGCCAACCCACGAAATGGGTGTGCGGGTGCTCAGCCAGCCAAAGAGGTAGAATGCGTAAG
65 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
30989020 CCAGGGATC-AGCCC-AGTCCCCC-CTGCATG
130 CCAGGGATCGA-CCCGA-TCCCCCTCTGCATG
** * ** * * * * ** * *
30989049 CTACCGATCCTACTGTCGCAACCCTCGGTCTGGTCT-GATCTAAGAC-TGGGAATGAAC-CTCGT
1 CTGTCGGTCCCGCTGCCACAACCCTCGGTC-CGACTGGGGCTTAGACAT-GGAATGAACTC-CCT
* * * *
30989111 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGAGCA
63 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCA
**
30989176 AGTCCA-GGATCGACCCGATCCCCCTCTGTGTG
128 AG-CCAGGGATCGACCCGATCCCCCTCTGCATG
* *
30989208 CTGTCGGTCCCGCTACCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
* * * *
30989273 CCTAAGCCAACCAATGAAAC-AGGCGTGCGGGCGCTCAGCCGGTCGGAAAGGCAGAATGCGCAAG
66 CCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
* **
30989337 CCGGGGATCGACCCGAT-CCCCTCTGTGTG
130 CCAGGGATCGACCCGATCCCCCTCTGCATG
* * **
30989366 CTGTCGATCCTGCTGCCGTAACCCTCG
1 CTGTCGGTCCCGCTGCCACAACCCTCG
30989393 ATCCAGTTCG
Statistics
Matches: 496, Mismatches: 136, Indels: 68
0.71 0.19 0.10
Matches are distributed among these distances:
156 5 0.01
157 48 0.10
158 197 0.40
159 127 0.26
160 3 0.01
161 3 0.01
162 1 0.00
166 4 0.01
167 3 0.01
168 57 0.11
169 46 0.09
170 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGC
CAGGGATCGACCCGATCCCCCTCTGCATG
Found at i:30989376 original size:317 final size:315
Alignment explanation
Indices: 30988741--30989422 Score: 818
Period size: 317 Copynumber: 2.2 Consensus size: 315
30988731 CTACTACTGG
* * * *
30988741 TCCTACTGCCGTAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTTCATATGCTAACTT
1 TCCTACTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCTCATATGCTAACTC
* * * * *
30988806 AACAAACGAAACAAGCGTGCGGGCGCTGAGCCGACTGGAGAGGCCTAATGCGCAAGTTAGGGATT
66 AACAAACGAAACAAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGAGCAAGTCAGGGATC
* * * * *
30988871 GGCCCGGTCCCCCTCTGCATGCCGTCGGTCTCGCTGCCACAATCCGTGGTCGGCTGGGGCTTAGA
131 GACCCGATCCCCCTCTGCATGCCGTCGGTCCCGCTACCACAATCCGTGGTCGACTGGGGCTTAGA
* ** * *
30988936 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGTGCTCAGCCAGCCA
196 CATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCGCTCAGCCAGCCA
* *
30989001 AAGAGGTAGAATGCGTAAGCCAGGGATCAGCCCAGTCCCCCCTGCATGCTACCGA
261 AAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCCTGCATGCTACCGA
* * * * *
30989056 TCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTAAGACTGGGAATGAACCTCGTATGCCTAAGT
1 TCCTACTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCTCATATG-CTAACT
** * *
30989121 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGAGCAAGTCCA-GGA
65 CAACAAACGAAACAAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGAGCAAGT-CAGGGA
** * *
30989185 TCGACCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTACCACAA-CCTTCGGTCCGACTGGGGCT
129 TCGACCCGATCCCCCTCTGCATGCCGTCGGTCCCGCTACCACAATCCGT-GGT-CGACTGGGGCT
* *
30989249 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACAGGCGTGCGGGCGCTCAGCCG
192 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCGCTCAGCCA
** * * ** **
30989314 GTCGGAA-AGGCAGAATGCGCAAGCCGGGGATC-GACCC-GATCCCCTCTGTGTGCTGTCGA
257 G-CCAAAGAGGCAGAATGCGCAAGCCAGGGATCAG-CCCAG-TCCCCCCTGCATGCTACCGA
* * **
30989373 TCCTGCTGCCGTAACCCTCGATCCAGT-TCGATCTTAGACTGGGAATGAAC
1 TCCTACTGCCGTAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAAC
30989423 TCTGTATACT
Statistics
Matches: 308, Mismatches: 51, Indels: 14
0.83 0.14 0.04
Matches are distributed among these distances:
315 54 0.18
316 100 0.32
317 151 0.49
318 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (315 bp):
TCCTACTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCTCATATGCTAACTC
AACAAACGAAACAAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGAGCAAGTCAGGGATC
GACCCGATCCCCCTCTGCATGCCGTCGGTCCCGCTACCACAATCCGTGGTCGACTGGGGCTTAGA
CATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCGCTCAGCCAGCCA
AAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCCTGCATGCTACCGA
Found at i:30990162 original size:26 final size:26
Alignment explanation
Indices: 30990124--30990176 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30990114 GGCTCAAAAT
*
30990124 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30990150 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30990176 C
1 C
30990177 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30990732 original size:330 final size:330
Alignment explanation
Indices: 30990122--30990752 Score: 903
Period size: 330 Copynumber: 1.9 Consensus size: 330
30990112 GTGGCTCAAA
* * * *
30990122 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTATGCCAAC
1 ATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
30990187 CCACGAAACGAGCGTGCGGGCGTTCAATCGACCGGAGAGGCATAATGTGCAAGTCAGGGATCGGC
66 ACACGAAACGAGCGTACGGGCGCTCAATCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGC
* *** *
30990252 TCGGTCCCCCTCTGCATGCTGCCGATCCCGCTACCAGTCCTGCTACCACAACCCTCGGTCCAGCT
131 CCAACCCCCCTCTGCATGCTACCGATCCCGCTACCAGTCCTGCTACCACAACCCTCGGTCCAGCT
* *
30990317 AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCT
196 AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGAGCT
30990382 CGACCTGTCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGGCCCGACCCGATCAACCCTCGGTCT
261 CGACCTGTCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCCGACCCGATCAACCCTCGGTCT
30990446 GATCCG
325 GATCCG
* *
30990452 ATCTTAGACTGAGAATGAACTCCATATGCTTAGAC-TGCGGAA-GAACTCTGTATGCCTAAGTCA
1 ATCTTAGACTGAGAATGAACTCCATATGCTTAGACAT--GGAATGAACTCCGTATGCCTAAGCCA
* * * **
30990515 ACACATGAAATGAGCGTACGGGTGCTCAATCGGTCGGAGAGGCATAATGCGCAAGCC-GAGGATC
64 ACACACGAAACGAGCGTACGGGCGCTCAATCGACCGGAGAGGCATAATGCGCAAGCCAG-GGATC
* *
30990579 AGCCCAACCCCCCTCTGCATGCTACCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCA
128 AGCCCAACCCCCCTCTGCATGCTACCGATCCCGCTACCAGTCCTGCTACCACAACCCTCGGTCCA
* *
30990644 GCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGA
193 GCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGA
* * *
30990709 GCTCGATC-GATTGGAGTGGCAGAATGCGCAAGTCGGGGATCGGC
258 GCTCGACCTG-TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGC
30990753 TCGGTCCCCC
Statistics
Matches: 265, Mismatches: 31, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
329 3 0.01
330 257 0.97
331 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (330 bp):
ATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
ACACGAAACGAGCGTACGGGCGCTCAATCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGC
CCAACCCCCCTCTGCATGCTACCGATCCCGCTACCAGTCCTGCTACCACAACCCTCGGTCCAGCT
AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGAGCT
CGACCTGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGACCCGATCAACCCTCGGTCTG
ATCCG
Found at i:30991204 original size:159 final size:156
Alignment explanation
Indices: 30990848--30991363 Score: 441
Period size: 158 Copynumber: 3.3 Consensus size: 156
30990838 AACTCCATAT
*
30990848 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG-CGCTCAG
* * * * * * * * *
30990913 TCAGTCGAAGAGGTAGAATGCGCAAGGCGGGGATTAGCCCGGTCCCCCCTTTGTTCTATCGATCC
65 CCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCCTATGTGCTACCGATCC
* * ** *
30990978 TGCTATCACAACCCTCATTTTGGTCCAA
130 TGCTACCACAACACTCA-TTCCGACCAA
* * * * *
30991006 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCTCA
* * * *
30991070 GCCAGTCGGAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGGT-CCCCCTATGCATGCTACCGA
64 GCCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCCTATG--TGCTACCGA
* * *
30991134 T-CTCGCTGCCACAACACTCGA-TCCGACTAGG
127 TCCT-GCTACCACAACACTC-ATTCCGACCA-A
* * * *
30991165 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-CGGCGCTCAG
* * * ** ** *
30991230 CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCAATCCCCCCTGCGTGCTGCCGATCC
65 CCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCCTATGTGCTACCGATCC
* ** * **
30991295 TGCTACCGCAAC-CATCGGTCCAATCTGA
130 TGCTACCACAACAC-TCATTCCGA-CCAA
* * *
30991323 TCTTAGAC-TGGGAATGAACTCCGTATGCCCAAGTCAACCCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
30991364 CAAAATGAGC
Statistics
Matches: 287, Mismatches: 56, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
157 11 0.04
158 154 0.54
159 113 0.39
160 9 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTCAGC
CAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCCTATGTGCTACCGATCCT
GCTACCACAACACTCATTCCGACCAA
Found at i:30991370 original size:158 final size:158
Alignment explanation
Indices: 30991005--30991423 Score: 425
Period size: 158 Copynumber: 2.6 Consensus size: 158
30990995 TTTTGGTCCA
* * *
30991005 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT-A
* * * * * * **
30991070 GCCAGTCGGAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGGTCCCCCTATGCATGCTACCGAT
65 GCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAATCCCCCTATGCATGCTACCGAT
* *
30991135 CTCGCTGCCACAACACTCGATCCGACTAG
130 CTCGCTACCACAACACTCGATCCAACTAG
** * * * * *
30991164 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT-
* * * *
30991228 AGCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCAATCCCCC-CTGCGTGCTGCCGA
64 AGCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAATCCCCCTATGCATGCTACCGA
* *
30991292 TC-CTGCTACCGCAAC-CATCGGTCCAATCT-G
129 TCTC-GCTACCACAACAC-TCGATCCAA-CTAG
* * * * *
30991322 ATCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACAAAATGAGCGTACGAGCACTAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTA-
* * * *
30991387 GCCGACCAGAGAGGTAGGATGCGCAAGCCGGGGATCG
65 GCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCG
30991424 AACGGGTGGT
Statistics
Matches: 210, Mismatches: 44, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 111 0.53
159 94 0.45
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.17
Consensus pattern (158 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAG
CCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAATCCCCCTATGCATGCTACCGATC
TCGCTACCACAACACTCGATCCAACTAG
Found at i:30992057 original size:26 final size:26
Alignment explanation
Indices: 30992019--30992071 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
30992009 GGCTCAAAAT
30992019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30992045 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30992071 C
1 C
30992072 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30992546 original size:158 final size:157
Alignment explanation
Indices: 30992045--30992546 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 157
30992035 ACTCCGTATG
* *
30992045 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
30992110 TGGCCGGAGAGGCAAAATGCGCAAGCCGAGGACCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
66 CGACCGGAGAGGCAAAATGCGCAAGCCGGGGA-TGACCCAGTCCCCCCTGCGTGCTGCCGATCCT
* * * * * * *
30992175 GCTGCCGTAATCCTTGGTCCGATCCAAT
130 ACTGTCGCAACCCTCGGTCCGGTTCAAT
* ** * * * *
30992203 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTGAACCCACGGAACGAGCGAGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
30992267 CCGACTGAAGAGGCATAATGCGTAAGCCAGGGATCAGCTCAGTCCCCCTCTGCGTGCTGCCGGTC
65 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATGA-CCCAGTCCCCC-CTGCGTGCTGCCGATC
* * **
30992332 C-AGCTGT-GACAACCCTCGGTCCAGCT-AGGG
128 CTA-CTGTCG-CAACCCTCGGTCCGGTTCA-AT
* * * * * *
30992362 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGCGTGTGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
30992427 CGACCGGAGAGGCAAAATGCACAAGCCGGGGATTGACCCGGTCACCCCTACGTGCTGCCGATCCT
66 CGACCGGAGAGGCAAAATGCGCAAGCCGGGGA-TGACCCAGTCCCCCCTGCGTGCTGCCGATCCT
30992492 ACTGTCGCAACCCTCGGTCCGGTTCAAT
130 ACTGTCGCAACCCTCGGTCCGGTTCAAT
*
30992520 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
30992547 TTAGATTGGG
Statistics
Matches: 268, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 148 0.55
159 115 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATGACCCAGTCCCCCCTGCGTGCTGCCGATCCTA
CTGTCGCAACCCTCGGTCCGGTTCAAT
Found at i:30992556 original size:26 final size:26
Alignment explanation
Indices: 30992520--30992572 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30992510 CCGGTTCAAT
*
30992520 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
30992546 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30992572 C
1 C
30992573 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30993282 original size:26 final size:26
Alignment explanation
Indices: 30993244--30993308 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
30993234 GGCCCAAAAT
30993244 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
30993270 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACCCCGTATG
30993296 CTTAGACTAGGGA
1 CTTAGACT-GGGA
30993309 TAAACTTCGT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
25 1 0.03
26 30 0.86
27 4 0.11
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:30993314 original size:26 final size:26
Alignment explanation
Indices: 30993244--30993322 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 26
30993234 GGCCCAAAAT
*
30993244 CTTAGACT-GGGAATGAACCCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
30993270 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGGATGAACTCCGTATG
* *
30993296 CTTAGACTAGGGATAAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
30993322 C
1 C
30993323 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 42 0.93
27 3 0.07
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:30993667 original size:26 final size:26
Alignment explanation
Indices: 30993638--30993690 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30993628 CTGATCCAAT
* *
30993638 CTTATACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30993664 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
30993690 C
1 C
30993691 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:30993933 original size:159 final size:157
Alignment explanation
Indices: 30993664--30994239 Score: 532
Period size: 159 Copynumber: 3.6 Consensus size: 157
30993654 ACTCTGTATG
*
30993664 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGTACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGT
* * **
30993729 C-AGCTGGAGAGGTAGAATGCGTAAGCCAGGGATCGGTCCAATCCCCCCATGTGTGCTGTCGATC
66 CGATC-GGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCC-TGTGTGCTG-CGATC
* *
30993793 CTGCTGCCGCTACCCTCGGTCCAGTCCAAT
128 CTGCTGCCGCAACCCTCGGTCCAGTCCGAT
* * * * *
30993823 CTTAGAC-TGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAG
* * * * * * *
30993887 TCGATCGGAGAGGCATAATGTGTAAGTCAAGGATTGGCCCGGTCCCCCTCTGTGTGCTGCCAGTC
65 TCGATCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCC-CTGTGTGCTGCGA-TC
* * * ** **
30993952 CCGCTGCCACAACCCTCGGTCCGGTTGGGG
128 CTGCTGCCGCAACCCTCGGTCCAGTCCGAT
* * * * *
30993982 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAAC-AGGTGTGCGGGCACTCGG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTACTCAG
* * * ** *
30994046 TCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGATGCCGATCC
65 TCGATCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGTGTGCTG-CGATCC
* * * * *
30994111 TACTACCGCAACCCTCAGT-CTGATCTGAT
129 TGCTGCCGCAACCCTCGGTCCAG-TCCGAT
* * * * ***
30994140 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCCTACGGACGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAG
* * * * * *
30994204 CCGATCAGAGAGGCAGGATGCGCAAGCCGGGGATCG
65 TCGATCGGAGAGGTAGAATGCGTAAGCCAGGGATCG
30994240 AACGGGTGGT
Statistics
Matches: 332, Mismatches: 75, Indels: 21
0.78 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 110 0.33
159 215 0.65
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGT
CGATCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGTGTGCTGCGATCCTG
CTGCCGCAACCCTCGGTCCAGTCCGAT
Found at i:30995428 original size:26 final size:26
Alignment explanation
Indices: 30995376--30995428 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30995366 CCAGTCCTAT
*
30995376 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
30995402 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
30995428 C
1 C
30995429 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:30996494 original size:26 final size:26
Alignment explanation
Indices: 30996456--30996508 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
30996446 CCGATTCAAT
*
30996456 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
30996482 CTTAGACAT-GGAATAAACTTCGTATG
1 CTTAGAC-TGGGAATAAACTTCGTATG
30996508 C
1 C
30996509 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:30997007 original size:170 final size:172
Alignment explanation
Indices: 30996617--30997009 Score: 427
Period size: 170 Copynumber: 2.3 Consensus size: 172
30996607 GATCCCGCTG
* * * **
30996617 CCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCA
1 CCACAACCCTCAGTCCAG-CTGGAGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCA
* * * * *
30996681 CGAAACGGGCGATGCAGGCGCTCAGCCGGCCGGAGACGTAGAATGCGCAAACCTGAGATCAGCCC
65 CGAAACGAGCGATGCAGGCGCTCAACCGACCGGAGACGCAGAATGCGCAAACCGGAGATCAGCCC
* *
30996746 AATCCCCCTCTGCGTGCTACCGATCTCGCTGCTGGTCCTGCTA
130 AATCCCCCTCTGCATGCTACCGATCTCGCTACTGGTCCTGCTA
* * *
30996789 CCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGCACTCCGTATGCCAAAGCCAACCCAT
1 CCACAACCCTCAGTCCAGCTGGAGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCAC
* * * * * * *
30996854 GAAATGAGCG-TGCGGGCGCTCAACCGACCGTAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCA
66 GAAACGAGCGATGCAGGCGCTCAACCGACCGGAGACGCAGAATGCGCAAACCGGAGATCAGCCCA
* ** *
30996917 GGTCCCCC-CTGCATGCTGTCGATCTTGCTACTGGTCCTGCTA
131 -ATCCCCCTCTGCATGCTACCGATCTCGCTACTGGTCCTGCTA
* * * * * * *
30996959 CCGCAACCCTCGGTCCGGTTTGATCTTAGAC-TGGGAATGAAATCCGTATGC
1 CCACAACCCTCAGTCCAGCTGGAGCTTAGACAT-GGAATGAACTCCGTATGC
30997010 TTAGACATGG
Statistics
Matches: 185, Mismatches: 33, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
169 1 0.01
170 73 0.39
171 45 0.24
172 65 0.35
173 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (172 bp):
CCACAACCCTCAGTCCAGCTGGAGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCAC
GAAACGAGCGATGCAGGCGCTCAACCGACCGGAGACGCAGAATGCGCAAACCGGAGATCAGCCCA
ATCCCCCTCTGCATGCTACCGATCTCGCTACTGGTCCTGCTA
Found at i:30997034 original size:26 final size:26
Alignment explanation
Indices: 30996983--30997035 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
30996973 CCGGTTTGAT
* *
30996983 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAACCCATATG
*
30997009 CTTAGACAT-GGAATGAACCCCATATG
1 CTTAGAC-TGGGAATGAAACCCATATG
30997035 C
1 C
30997036 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAACCCATATG
Found at i:30997207 original size:527 final size:527
Alignment explanation
Indices: 30996122--30997288 Score: 1676
Period size: 527 Copynumber: 2.2 Consensus size: 527
30996112 AACTTCGTAT
* ** * * ** * *
30996122 GCTTAGACATGCAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACGGGCGAGCAGGCGCTCAG
* * * * *
30996187 CCAGCCGGAGAGGCATAAT--GC--AC-A-AG---AGCCCAATCCCCCTCTGCGTGCTGCCAATC
66 CCGGCCGGAGACGTACAATGCGCAAACTAGAGATCAGCCCAATCCCCCTCTGCGTGCTACCAATC
* * *
30996243 TCGCTGCTGGTCCTGCTACCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTTCGT
131 TCGCTGCTGGTCCTGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGT
* * * *
30996308 ATGCCAAAGCCAACCCACGAAATGAGCGTGTGGGCATTCAGCCGACCGGAGAGGTAGAATGCGCA
196 ATGCCAAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCA
*
30996373 AGCCGAGGATCGACCAGGTCCCCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGCTATCGCAA
261 AGCCGAGGATCGACCAGGTCCCCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGCTACCGCAA
* * **
30996438 CCCTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATAAACTTC
326 CCCTCGGTCCGATTCAATCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATAAACCCC
*
30996503 GTATGCCTAAGCCAACCAATGAAACGAGCATGCAGCCGCTCAGCCGGCCTGAGAGGCAAAATACG
391 ATATGCCTAAGCCAACCAATGAAACGAGCATGCAGCCGCTCAGCCGGCCTGAGAGGCAAAATACG
* *
30996568 CAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTCCTGCCGATCCCGCTGCCACAACCCTCGGTCC
456 CAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTCCTACCGATCCCGCTGCCACAACCCTCGGTCC
30996633 GACTGGG
521 GACTGGG
30996640 GCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACGGGCGATGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACGGGCGA-GCAGGCGCTCA
* *
30996705 GCCGGCCGGAGACGTAGAATGCGCAAACCT-GAGATCAGCCCAATCCCCCTCTGCGTGCTACCGA
65 GCCGGCCGGAGACGTACAATGCGCAAA-CTAGAGATCAGCCCAATCCCCCTCTGCGTGCTACCAA
*
30996769 TCTCGCTGCTGGTCCTGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGCACTCC
129 TCTCGCTGCTGGTCCTGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCC
* * *
30996834 GTATGCCAAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCGTAGAGGCAGAATGCG
194 GTATGCCAAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCG
* * * * *
30996899 CAAGCCGGGGATCGGCCAGGT-CCCCCCTGCATGCTGTCGATCTTGCTACTGGTCCTGCTACCGC
259 CAAGCCGAGGATCGACCAGGTCCCCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGCTACCGC
* ** *
30996963 AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACC
324 AACCCTCGGTCCGATTCAATCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATAAACC
* * * *
30997028 CCATATGCCTAAGCCAACCCATGAAACGAGCGTGTAGGCGCTCAGCCGG-CTGGAGAGGCAAAAT
389 CCATATGCCTAAGCCAACCAATGAAACGAGCATGCAGCCGCTCAGCCGGCCT-GAGAGGCAAAAT
* * *
30997092 GCGCAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTCCTATCGATCTCGCTGCCACAACCCTCGG
453 ACGCAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTCCTACCGATCCCGCTGCCACAACCCTCGG
* *
30997157 TCTGGCTGGG
518 TCCGACTGGG
* *
30997167 GCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCATGAAACGGGCGAGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACGGGCGAGCAGGCGCTCAG
* * * **
30997232 CCGGCTGGAGACGTACAATGCGCAAACTAGGGATCGGCCCGGTCCCCC-CTGCGTGCT
66 CCGGCCGGAGACGTACAATGCGCAAACTAGAGATCAGCCCAATCCCCCTCTGCGTGCT
30997289 GTCGATCCTG
Statistics
Matches: 576, Mismatches: 60, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
518 45 0.08
519 26 0.05
521 2 0.00
523 1 0.00
524 1 0.00
525 13 0.02
526 52 0.09
527 272 0.47
528 164 0.28
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (527 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACGGGCGAGCAGGCGCTCAG
CCGGCCGGAGACGTACAATGCGCAAACTAGAGATCAGCCCAATCCCCCTCTGCGTGCTACCAATC
TCGCTGCTGGTCCTGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGT
ATGCCAAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCA
AGCCGAGGATCGACCAGGTCCCCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGCTACCGCAA
CCCTCGGTCCGATTCAATCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATAAACCCC
ATATGCCTAAGCCAACCAATGAAACGAGCATGCAGCCGCTCAGCCGGCCTGAGAGGCAAAATACG
CAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTCCTACCGATCCCGCTGCCACAACCCTCGGTCC
GACTGGG
Found at i:30997267 original size:355 final size:347
Alignment explanation
Indices: 30996640--30997418 Score: 847
Period size: 355 Copynumber: 2.2 Consensus size: 347
30996630 TCCGACTGGG
* *
30996640 GCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACGGGCGATGCAGGCGCTCA
1 GCTTAGACATGGAATGAAC-CCCTATGCCTAAGCCAACCCACGAAACGAGCG-TG-AGGCGCTCA
* * *
30996705 GCCGGCCGGAGACGTAGAATGCGCAAACCTGAGATCAGCCCAATCCCCCTCTGCGTGCTACCGAT
63 GCCGGCCGGAGACGCAAAATGCGCAAACCTGAGATCAGCCCAATCCCCCTCTGCGTCCTACCGA-
* *
30996770 CTCGCTGCTGGTCCTGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGCACTCCG
127 CTC-CTGC-GG-CCTG--ACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCC
* * * * *
30996835 TATGCCAAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCGTAGAGGCAGAATGCGC
187 TATGCCAAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCAACCGACCGGAGACGCACAATGCGC
* *
30996900 AAGCCGGGGATCGGCCAGGTCCCCCCTGCATGCTGTCGATCTTGCTACTGGTCCTGCTACCGCAA
252 AAACCAGGGATCGGCCAGGTCCCCCCTGCATGCTGTCGA---T-C--CT-G--CTG---CCGCAA
* * **
30996965 CCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAAATCCGTAT
305 CCCTCGGCCCGGTTCGATCTTAGACTGGGAATGAAATCCACAT
*
30997008 GCTTAGACATGGAATGAACCCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTAGGCGCTCAG
1 GCTTAGACATGGAATGAACCCC-TATGCCTAAGCCAACCCACGAAACGAGCGTG-AGGCGCTCAG
* * * * ** *
30997073 CCGGCTGGAGAGGCAAAATGCGC-AAGCTGGGGATC-GACCCGGTCCCCCTCTGCGTCCTATCGA
64 CCGGCCGGAGACGCAAAATGCGCAAACCT-GAGATCAG-CCCAATCCCCCTCTGCGTCCTACCGA
* **
30997136 -T-CT-C-G-CTG-CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
127 CTCCTGCGGCCTGACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
** * * * * * *
30997195 CTTAGCCAACCCATGAAACGGGCGAGCGGGCGCTCAGCCGGCTGGAGACGTACAATGCGCAAACT
192 CAAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCAACCGACCGGAGACGCACAATGCGCAAACC
* *
30997260 AGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGCCCGGTTCGA
257 AGGGATCGGCCAGGTCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGCCCGGTTCGA
*
30997325 TCTTAGACTGGGAATGAACTCCACAT
322 TCTTAGACTGGGAATGAAATCCACAT
* * * *
30997351 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCA
1 GCTTAGACAT-GGAATGAAC-CCCTATGCCTAAGCCAACCCACGAAACGAGCGTGAGG-CGCTCA
30997415 GCCG
63 GCCG
30997419 ACCAGAGAGG
Statistics
Matches: 359, Mismatches: 46, Indels: 37
0.81 0.10 0.08
Matches are distributed among these distances:
342 3 0.01
343 99 0.28
344 2 0.01
346 3 0.01
348 1 0.00
349 2 0.01
351 1 0.00
352 1 0.00
355 128 0.36
358 3 0.01
360 1 0.00
362 1 0.00
363 2 0.01
365 1 0.00
366 5 0.01
367 61 0.17
368 45 0.13
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.18
Consensus pattern (347 bp):
GCTTAGACATGGAATGAACCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGCGCTCAGCC
GGCCGGAGACGCAAAATGCGCAAACCTGAGATCAGCCCAATCCCCCTCTGCGTCCTACCGACTCC
TGCGGCCTGACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAA
GCCAACCCATGAAACGAGCGAGCGGGCGCTCAACCGACCGGAGACGCACAATGCGCAAACCAGGG
ATCGGCCAGGTCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGCCCGGTTCGATCTT
AGACTGGGAATGAAATCCACAT
Found at i:30997985 original size:22 final size:22
Alignment explanation
Indices: 30997955--30997998 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
30997945 CGGTTAGGCT
* * *
30997955 CTCCGGCGATGCTTCGACGATG
1 CTCCAGCGATGCTCCAACGATG
30997977 CTCCAGCGATGCTCCAACGATG
1 CTCCAGCGATGCTCCAACGATG
30997999 GTGCCCAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.18, C:0.34, G:0.27, T:0.20
Consensus pattern (22 bp):
CTCCAGCGATGCTCCAACGATG
Found at i:30999026 original size:26 final size:26
Alignment explanation
Indices: 30998988--30999040 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30998978 GGCTCAAACT
*
30998988 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30999014 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
30999040 C
1 C
30999041 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:30999526 original size:26 final size:26
Alignment explanation
Indices: 30999488--30999540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
30999478 AGCTCAAACT
30999488 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
30999514 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
30999540 C
1 C
30999541 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31000766 original size:159 final size:159
Alignment explanation
Indices: 31000434--31000777 Score: 372
Period size: 159 Copynumber: 2.2 Consensus size: 159
31000424 CTCTGTATGC
* *
31000434 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTACGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACC
* * * *
31000499 GGCCAGAGAGGTAGAGTACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGTGTGCTGTCGGTCCC
66 GGCCAGAGAGGAAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATCCC
*
31000564 GCTACCACAAACCTCGGTCCAGCTGGGGA
131 GCTACCACAAACCTCGGTCCAGCTGGAGA
* * * * **
31000593 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACC
* * * * * * * **
31000658 GGTCGGAGAGGAAGAATGCGCAAGTCGGGGATTGGCCTGGTCCCCCT-TGCGTGCTG-CTGATCC
66 GGCCAGAGAGGAAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTC-GATCC
* * * * **
31000721 TGCTACTACAACCCTCGGTCCAATCT-GATC
130 CGCTACCACAAACCTCGGTCC-AGCTGGAGA
31000751 TTAGAC-TGGGAAATGAACTCCGTATGC
1 TTAGACAT-GG-AATGAACTCCGTATGC
31000778 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 39 0.26
159 111 0.73
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACC
GGCCAGAGAGGAAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATCCC
GCTACCACAAACCTCGGTCCAGCTGGAGA
Found at i:31002178 original size:26 final size:26
Alignment explanation
Indices: 31002140--31002190 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31002130 GGCTCAAACT
31002140 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31002166 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
31002191 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31003440 original size:158 final size:159
Alignment explanation
Indices: 31003096--31003440 Score: 401
Period size: 159 Copynumber: 2.2 Consensus size: 159
31003086 AACTCTGTAT
* * *
31003096 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAA
* * * *
31003161 CCGGCCAGAGAGGTAGAATGCGCAAATCGAGGATTGACCCAATCTCCCTTTGCGTGCTGTCGGTC
66 CCGGCCAGAGAGGAAGAATGCGCAAATCGAGGATCGACCCAATCTCCCCTTGCGTGCTGTCGATC
** *
31003226 CTGCTACCACAACCCTCGGTCTGGCTAGG
131 CTGCTACCACAACCCTCGGTCAAGCTAGA
* * * * * * *
31003255 GATTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAA
* * * * **
31003320 CCGGTCGGAGAGGAAGAATGCGCAAGTCGAGGATCGGCCCGGTC-CCCCTTGCGTGCTG-CTGAT
66 CCGGCCAGAGAGGAAGAATGCGCAAATCGAGGATCGACCCAATCTCCCCTTGCGTGCTGTC-GAT
*
31003383 CCTGCTACCACAACCCTCGGTCCAATCT-GA
130 CCTGCTACCACAACCCTCGGT-CAAGCTAGA
* *
31003413 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31003441 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 59 0.38
159 94 0.61
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAA
CCGGCCAGAGAGGAAGAATGCGCAAATCGAGGATCGACCCAATCTCCCCTTGCGTGCTGTCGATC
CTGCTACCACAACCCTCGGTCAAGCTAGA
Found at i:31003466 original size:26 final size:26
Alignment explanation
Indices: 31003414--31003466 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31003404 CCAATCTGAT
**
31003414 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCCAATG
* *
31003440 CTTAGACTGGGGATGAATTTCCAATG
1 CTTAGACTGGGAATGAACTTCCAATG
31003466 C
1 C
31003467 CATCGGTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCCAATG
Found at i:31003622 original size:26 final size:26
Alignment explanation
Indices: 31003571--31003623 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31003561 GGCTCAAACT
*
31003571 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31003597 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31003623 C
1 C
31003624 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31003892 original size:185 final size:183
Alignment explanation
Indices: 31003570--31003964 Score: 521
Period size: 185 Copynumber: 2.1 Consensus size: 183
31003560 TGGCTCAAAC
*
31003570 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
* * * * *
31003635 CATGAAACAAGCGTGCGGGTACTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCC
66 CACGAAACAAGCGTGAGGGTACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGACCGGCC
* *
31003700 CGATCCCCCCCTACGTGCTGTCTATCCTG-T-T-GCCAATACCCTCGATCTGGTCCGA
131 CGAT--CCCCCTACGTGCTATCGATCCTGCTATCG-C-A-ACCCTCGATCTGGTCCGA
* * *
31003755 TCTTAGATTGGGAATGAACTCTGTATGCTTAGACGTGGAATGAAC-TCTGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTC-ATATGCCTAAGCCAAC
** * *
31003819 CCACGAAATGAGCGTGAGGGTGCTCAGCCGGCC-GAAGAGGCAGAATGCGCAAGCCAGGGACCGG
65 CCACGAAACAAGCGTGAGGGTACTCAGCCGACCAG-AGAGGCAGAATGCGCAAGCCAGGGACCGG
* * * *
31003883 CCTGATCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCTTCGATCTGGTCTGA
129 CCCGATCCCCCTACGTGCTATCGATCCTGCTATCGCAACCCTCGATCTGGTCCGA
31003938 TCTTAGACTGGGAATGAACTCTGTATG
1 TCTTAGACTGGGAATGAACTCTGTATG
31003965 TCTAAGTCGA
Statistics
Matches: 185, Mismatches: 20, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
183 62 0.34
184 5 0.03
185 117 0.63
186 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (183 bp):
TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
CACGAAACAAGCGTGAGGGTACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGACCGGCC
CGATCCCCCTACGTGCTATCGATCCTGCTATCGCAACCCTCGATCTGGTCCGA
Found at i:31004508 original size:26 final size:26
Alignment explanation
Indices: 31004470--31004522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31004460 GGCTCAAACT
*
31004470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
31004496 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
31004522 C
1 C
31004523 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:31004792 original size:185 final size:185
Alignment explanation
Indices: 31004469--31004815 Score: 418
Period size: 185 Copynumber: 1.9 Consensus size: 185
31004459 TGGCTCAAAC
* *
31004469 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACACCGTATGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACC
* * * * * *
31004534 CATGAAATGGGTATGCGGGAGCTTAGCCGACCGAAAAGGCAGAATGTGCAAGCCGGGGATCGGCT
66 CACGAAAAGGGTA-GCGGGAGCTCAGCCGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGCCT
* *
31004599 TGGTCCCCC-CTGCGTGATGTTGATCCTGCTGCTGCAACCCTCGGTCCAATTGCAA
130 TGGTCCCCCTCTACGTGATGTTGATCCCGCTGCTGCAACCCTCGGTCCAATTGCAA
* *
31004654 TCTTAGACTGGGAATGAACACCGTATGCTTA-A-ATTGGGGATGAACTACCTATGCCTAAGTCAA
1 TCTTAGACTGGGAATGAACACCGTATGCTTAGACA-T-GGAATGAACTACCTATGCCTAAGCCAA
* * * * * *
31004717 CCCACGAAAAGAGCGTA-CGGGTGCTCAGCCGGCC-AGAGAGGCATAATGCGTAAGCTAGGGATC
64 CCCACGAAAAG-G-GTAGCGGGAGCTCAGCCGACCGA-AAAGGCAGAATGCGCAAGCCAGGGATC
*
31004780 AGCCTT-GTCCCCCTCTACGTGCTGTTGATCCCGCTG
126 -GCCTTGGTCCCCCTCTACGTGATGTTGATCCCGCTG
31004816 TCGGTCCTGC
Statistics
Matches: 136, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
183 1 0.01
184 3 0.02
185 105 0.77
186 24 0.18
187 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (185 bp):
TCTTAGACTGGGAATGAACACCGTATGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACC
CACGAAAAGGGTAGCGGGAGCTCAGCCGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCGCCTT
GGTCCCCCTCTACGTGATGTTGATCCCGCTGCTGCAACCCTCGGTCCAATTGCAA
Found at i:31005376 original size:158 final size:157
Alignment explanation
Indices: 31005022--31005527 Score: 482
Period size: 158 Copynumber: 3.2 Consensus size: 157
31005012 CCGATTAGAT
*
31005022 CTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTAT-GCTTAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
31005087 TGGCCGGAGAGGTAGAATGCGCAAGCGGGGGACCGACCCGATCCACCCCTGCGTGCTTTCGATCC
65 CGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCC-CCCCTACGTCCTGTCGATCC
* * *
31005152 TGCTACCACAACCCTCGGTCTAGTCTGAT
129 CGCTACCACAACCCTCGGTCTAGGCTGAG
* * * * *
31005181 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAATGACCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCTT-AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
31005246 CGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTAC-TCCTGTCGATCC
65 CGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTACGTCCTGTCGATCC
* *
31005310 CGCTGCCACAACCCTCGGTCT-GGCTGGGG
129 CGCTACCACAACCCTCGGTCTAGGCT-GAG
* * * * *
31005339 CTTGGACAT-GTAATGAACTCCCTATGCATTAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGC-TTAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** *
31005403 CC-AGCTGGAGAGGTAGAATGCGTAAACTAGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATC
64 CCGA-CCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTCCTGTCGATC
* ** * * *
31005467 CTGCTACCGTAACCCTCGGTC-CGATCTGAT
128 CCGCTACCACAACCCTCGGTCTAG-GCTGAG
* * *
31005497 CTTACACTGGGAATGAACTCTGCATGCTTAG
1 CTTAGACTGGGAATGAACTCCGTATGCTTAG
31005528 ATTGGGGATG
Statistics
Matches: 278, Mismatches: 59, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 11 0.04
158 170 0.61
159 97 0.35
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTCCTGTCGATCCCG
CTACCACAACCCTCGGTCTAGGCTGAG
Found at i:31006257 original size:26 final size:26
Alignment explanation
Indices: 31006219--31006271 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31006209 GGCTCAAACT
31006219 CTTAGACTGGGAATGAACTCCGTGTG
1 CTTAGACTGGGAATGAACTCCGTGTG
31006245 CTTAGACAT-GGAATGAACTCCGTGTG
1 CTTAGAC-TGGGAATGAACTCCGTGTG
31006271 C
1 C
31006272 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTGTG
Found at i:31006757 original size:26 final size:26
Alignment explanation
Indices: 31006719--31006771 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31006709 GGCTCAAACT
31006719 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31006745 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
31006771 C
1 C
31006772 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31007450 original size:26 final size:26
Alignment explanation
Indices: 31007414--31007466 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31007404 CCGGTCCGAT
31007414 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
* *
31007440 CTTAGGCTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
31007466 C
1 C
31007467 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:31012762 original size:26 final size:26
Alignment explanation
Indices: 31012712--31012762 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
31012702 CCGATCCGAT
*
31012712 CTTAGACTGGGAATGAACACTGTATA
1 CTTAGACTGGGAATGAACACCGTATA
* * *
31012738 CTTATACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACACCGTAT
31012763 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATA
Found at i:31013121 original size:26 final size:26
Alignment explanation
Indices: 31013092--31013144 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31013082 CCAGTCTGAT
31013092 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
31013118 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
31013144 C
1 C
31013145 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:31013473 original size:26 final size:26
Alignment explanation
Indices: 31013437--31013500 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
31013427 CATCAGTCCC
31013437 ATCC-AAT-CTTAAAC-TAGGAATGAA
1 ATCCGAATGCTTAAACAT-GGAATGAA
*
31013461 ATCCGAATGCTTAGACATGGAATGAA
1 ATCCGAATGCTTAAACATGGAATGAA
* * *
31013487 CTCCGTACGCTTAA
1 ATCCGAATGCTTAA
31013501 GCCAACCAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 24 0.75
27 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (26 bp):
ATCCGAATGCTTAAACATGGAATGAA
Found at i:31013588 original size:352 final size:352
Alignment explanation
Indices: 31012922--31013665 Score: 836
Period size: 352 Copynumber: 2.1 Consensus size: 352
31012912 TCGGTTGGGG
* * * *** * * *
31012922 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGTGCTTAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCAATAAAATGAGCACACGAGTGCTGAAC
* * * * * * * *
31012987 CGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCTGGTCCCCCTTGTGTACTGTCGATCTT
66 CGGTCGGAAAGGCAGAATGCGCAAGCCGAAGATCAGCCCGATCCCCCTCGTGTAC--TCAATCCT
* * ** * * *
31013052 GCTACTAGTCCTACTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATAT
129 GCTACTAGTCCTACTACCGCAACCATCAGTCCAGTCCAATCTTAAACTAGGAATGAAATCCATAT
* * ** *
31013117 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATTGAGCATGCGGGTGCTCAG
194 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCTCAG
* * * * *
31013182 TCGGCCAAAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGGTCCCCCCTGCGTGCTGTCGATCC
259 TCGGCCAAAGAGGCAGAATGCACAAGCCGAGGACCAACCCGATCCCCCCTGCGTGCTGTCAATCC
*
31013247 TACTACCACAACCCTCAGTT-TGATCCAAT
324 TACTACCACAACCCTCAGTTCAG-TCCAAT
*
31013276 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCACACGAGTGCTGAAC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCAATAAAATGAGCACACGAGTGCTGAAC
* * **
31013341 CGGTTGGAAAGGCATAATGCGCAAGGTGAAGATCAGCCCGATCCCCCTACGTGCTAC-CAATCCT
66 CGGTCGGAAAGGCAGAATGCGCAAGCCGAAGATCAGCCCGATCCCCCT-CGTG-TACTCAATCCT
* * *
31013405 GCTACTGGTTCT-CTACCGTAACCATCAGTCCCA-TCCAATCTTAAACTAGGAATGAAATCCGA-
129 GCTACTAGTCCTACTACCGCAACCATCAGT-CCAGTCCAATCTTAAACTAGGAATGAAATCC-AT
* **
31013467 ATGCTTAGACATGGAATGAACTCCGTACGCTTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTC
192 ATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCTC
** ** *
31013532 AG-CTGGCCGGAGAGGCAGAATGCACAAGTTG-GGACCATCCCGATCCCCCACTGCGTGCTGTCA
257 AGTC-GGCCAAAGAGGCAGAATGCACAAGCCGAGGACCAACCCGATCCCCC-CTGCGTGCTGTCA
* * **
31013595 ATCCTACTGCCACGACCCTCAGTTCAGTCTTAT
320 ATCCTACTACCACAACCCTCAGTTCAGTCCAAT
* * *
31013628 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTGAACC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACC
31013666 CACGAAACAA
Statistics
Matches: 325, Mismatches: 58, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
351 15 0.05
352 190 0.58
353 20 0.06
354 94 0.29
355 3 0.01
356 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (352 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCAATAAAATGAGCACACGAGTGCTGAAC
CGGTCGGAAAGGCAGAATGCGCAAGCCGAAGATCAGCCCGATCCCCCTCGTGTACTCAATCCTGC
TACTAGTCCTACTACCGCAACCATCAGTCCAGTCCAATCTTAAACTAGGAATGAAATCCATATGC
TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCTCAGTC
GGCCAAAGAGGCAGAATGCACAAGCCGAGGACCAACCCGATCCCCCCTGCGTGCTGTCAATCCTA
CTACCACAACCCTCAGTTCAGTCCAAT
Found at i:31013860 original size:159 final size:158
Alignment explanation
Indices: 31013469--31013877 Score: 394
Period size: 159 Copynumber: 2.6 Consensus size: 158
31013459 AAATCCGAAT
* * *
31013469 GCTTAGACATGGAATGAACTCCGTACGCTTAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
** * * * **
31013534 CTGGCCGGAGAGGCAGAATGCACAAGTTGGGACCATCCCGATCCCCCACTGCGTGCTGTCAATCC
66 CCAGCCGGAGAGGCAGAATGCACAAGTAGGGACCAGCCCGATCCCCCACTGCATGCTACCAATCC
* * * * *
31013599 TACTGCCACGACCCTCAGTTCAGTCTTA
131 CACTACCACAACCCTCAGTTCAGGCTGA
* * ** * * *
31013627 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACAAGTGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
* * * * **
31013691 GCCCA-CCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGG
65 G-CCAGCCGGAGAGGCAGAATGCACAAGT-AGGGACCAGCCCGATCCCCCACTGCATGCTACCAA
* * *
31013755 TCCCGCTACCACAACCCTCGGTTC-GGCTGGG
128 TCCCACTACCACAACCCTCAGTTCAGGCT-GA
* * **
31013786 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGA-TCGTGCGGGTACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGT-GTGCGGGCGCTCA
* * * *
31013850 GCCAGTCGGAGACGTAGAATACACAAGT
65 GCCAGCCGGAGAGGCAGAATGCACAAGT
31013878 CGGGGATCGA
Statistics
Matches: 196, Mismatches: 48, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.01
158 81 0.41
159 113 0.58
160 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCACAAGTAGGGACCAGCCCGATCCCCCACTGCATGCTACCAATCC
CACTACCACAACCCTCAGTTCAGGCTGA
Found at i:31013995 original size:26 final size:26
Alignment explanation
Indices: 31013944--31013996 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31013934 CCGGTTTGAT
* * *
31013944 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
*
31013970 CTTAGACAGGGGATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
31013996 C
1 C
31013997 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:31015667 original size:26 final size:26
Alignment explanation
Indices: 31015638--31015713 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
31015628 CCGATCTGAT
*
31015638 CTTAGACTGGGAATGAACTCTGTACG
1 CTTAGATTGGGAATGAACTCTGTACG
31015664 CTTAGATTGGGAATGAACTCTGTACG
1 CTTAGATTGGGAATGAACTCTGTACG
* *
31015690 CTTAGATTGGGGATAAACTCTGTA
1 CTTAGATTGGGAATGAACTCTGTA
31015714 TGCCTAAGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTACG
Found at i:31016437 original size:158 final size:157
Alignment explanation
Indices: 31015829--31016416 Score: 554
Period size: 159 Copynumber: 3.8 Consensus size: 157
31015819 CTGTTGCTGG
* * * * *
31015829 TCCTACTACCGCAACCCTCGGTTCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTACCGCAACCCTC-GTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * * * ***
31015894 CAACCCACGAAACGAGCTTGCGGGTGCTTAGCCTACCGAAGAGGC-TGAATGCGCAAGTCGA-GA
65 CAACCCATGAAATGAGCGTACGGGTGCTGAGCCGGTCGAAGAGGCAT-AATGCGCAAGTCGAGGA
* * *
31015957 TC-A------CCCC-CTGCATGCTGTCGA
129 TCAACCCGGTCCCCTCTGCGTGCTGCCAA
* ** * * *
31015978 TCCTACTGTCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTGCTACCGCAACCCTC-GTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
** * *
31016043 CAACCCATGAAATGAGCGTACGGGCACTGAGCCAGTCGAAGAGGCATAATGCGTAAGTCGAGGAT
65 CAACCCATGAAATGAGCGTACGGGTGCTGAGCCGGTCGAAGAGGCATAATGCGCAAGTCGAGGAT
31016108 CAACCCGGTCCCCCTCTGCGTGCTGCCAA
130 CAACCCGGT-CCCCTCTGCGTGCTGCCAA
* * ** **
31016137 TCCTGCTACCACAACCCTCGATTCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
1 TCCTGCTACCGCAACCCTCG-TCCGGTCT-GATCTTAGAC-TGGGAATGAACTCTGTATGCCTAA
* * * * * * *
31016200 GTCAACCCATGAAACGGGCATACGGGTGCTCGA-CCGATCGGAGAGGCAGAATGCACAAGTCGAG
63 GTCAACCCATGAAATGAGCGTACGGGTGCT-GAGCCGGTCGAAGAGGCATAATGCGCAAGTCGAG
*
31016264 GATCAACCCGGTCCCCTCTGCGTGCTGTCAA
127 GATCAACCCGGTCCCCTCTGCGTGCTGCCAA
* * *
31016295 TCTTGTTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTGCTACCGCAACCCTC-GTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * * * * *
31016360 GAACCCACGAAATGAGTGTGCAGGTGCTGAGTCGGTAGAAGAGGCATAATGCGCAAG
65 CAACCCATGAAATGAGCGTACGGGTGCTGAGCCGGTCGAAGAGGCATAATGCGCAAG
31016417 CCAGGGATCG
Statistics
Matches: 350, Mismatches: 70, Indels: 29
0.78 0.16 0.06
Matches are distributed among these distances:
149 104 0.30
150 5 0.01
151 1 0.00
157 3 0.01
158 113 0.32
159 121 0.35
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
TCCTGCTACCGCAACCCTCGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
AACCCATGAAATGAGCGTACGGGTGCTGAGCCGGTCGAAGAGGCATAATGCGCAAGTCGAGGATC
AACCCGGTCCCCTCTGCGTGCTGCCAA
Found at i:31017166 original size:26 final size:26
Alignment explanation
Indices: 31017116--31017166 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
31017106 GGCTTAAACT
*
31017116 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31017142 CTTAGACAT-GGAATGAAGTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
31017167 CCATAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31017489 original size:26 final size:26
Alignment explanation
Indices: 31017460--31017512 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31017450 CCAATCCGAT
31017460 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31017486 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31017512 C
1 C
31017513 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31017788 original size:26 final size:26
Alignment explanation
Indices: 31017754--31017806 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31017744 CTGCGTGCTA
31017754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31017780 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31017806 C
1 C
31017807 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31018483 original size:26 final size:26
Alignment explanation
Indices: 31018440--31018494 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
31018430 CTTTGCGTGC
31018440 TGCTTAGACTGAGAATGAACTCCGTA
1 TGCTTAGACTGAGAATGAACTCCGTA
*
31018466 TGCTTAGACT-AGGGATGAACTCCGTA
1 TGCTTAGACTGA-GAATGAACTCCGTA
31018492 TGC
1 TGC
31018495 CTAGGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGAGAATGAACTCCGTA
Found at i:31018689 original size:26 final size:26
Alignment explanation
Indices: 31018651--31018703 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31018641 CTGATCCGAT
31018651 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31018677 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31018703 C
1 C
31018704 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31018692 original size:516 final size:513
Alignment explanation
Indices: 31018035--31019413 Score: 1996
Period size: 496 Copynumber: 2.7 Consensus size: 513
31018025 CAGCCGGTCG
* * * * ** *
31018035 GAGAGGCAGAATGCGTAAGCC-AGGGATCGAGCCCGGTCCCCCCTGCCATGCTATCGATCCTACT
1 GAGAGGCATAATACGTAAGCCGA-GGTTC-AGCTCGGTCCCCCCTG-CATGCTGCCGATCCTGCT
* * * **
31018099 ACTGG-CCTGCTGCCGTAACCCTCGGTCTGATCTGATCTTAGATTGGGAATGAACTCCGCATGCT
63 ATTGGTCCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCT
* * * * *
31018163 TAGACAGGGAATGAACTCCGTATACCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCTG
128 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCTG
*
31018228 GCCGAAGAGGTAGAATGCGCAAGCCAGGGACCAGCCTAACCCCTCCTGTGTGCTGTCGATCCTGC
193 GCCGAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCTAACCCCTCC--TGTGCTGTCGATCCTGC
* *
31018293 TATTGGAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCC
256 TA-TGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCC
*
31018358 ACGAAACGAGCGTTAGGGCGCTGAGCTGACTGGAAAGGCATAATCCACAAGCCGAGGATCGGCCC
320 ACGAAACGAGCGTTAGGGCGCTGAGCTGACTGGAGAGGCATAATCCACAAGCCGAGGATCGGCCC
*
31018423 GATCCCTCTTTGCGTGCTGCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTC
385 GATCCCTCTCTGCGTGCTGCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTC
*
31018488 CGTATGCCTAGGTCAACCCATGATACGAGCGTGCGGGCACTCAACCGACTTGACAGGTCGGCCA
450 CGTATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACTTGACAGGTCGGCCA
31018552 GAGAGGCATAATACGTAAGCCGAGGTTCAGCTCGGTCCCCCCTGCATGCTGCCGATCCTGCTATT
1 GAGAGGCATAATACGTAAGCCGAGGTTCAGCTCGGTCCCCCCTGCATGCTGCCGATCCTGCTATT
31018617 GGTCCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
66 GGTCCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * * **
31018682 ACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCAGCCCGCC
131 ACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCTGGCC
* * * * *
31018747 GAAGAGGCAAAATGCGCAAGTC-GAGGATCGGCCTGA----TCC--TGC--T-G---C--C-A--
196 GAAGAGGCAGAATGCGCAAGCCAG-GGACCAGCCTAACCCCTCCTGTGCTGTCGATCCTGCTATG
*
31018794 CAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
260 CAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
31018859 ACGAGCGTTAGGGCGCTGAGCTGACTGGAGAGGCATAATCCACAAGCCGAGGATCGGCCCGATCC
325 ACGAGCGTTAGGGCGCTGAGCTGACTGGAGAGGCATAATCCACAAGCCGAGGATCGGCCCGATCC
*
31018924 CTCTCTGCGTGCTGCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTAT
390 CTCTCTGCGTGCTGCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTAT
31018989 GCCTAGGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACTTGACAGGTCGGCCA
455 GCCTAGGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACTTGACAGGTCGGCCA
31019048 GAGAGGCATAATACGTAAGCCGAGGTTCAGCTCGGTCCCCCCTGCATGCTGCCGATCCTGCTATT
1 GAGAGGCATAATACGTAAGCCGAGGTTCAGCTCGGTCCCCCCTGCATGCTGCCGATCCTGCTATT
31019113 GGTCCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
66 GGTCCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* *
31019178 ACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAGCTGGTC
131 ACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCTGGCC
*** *
31019243 -AGAGAGGCAGAATGCGCAAGCCACAAACCAGCC-AGGTCCCC-CCTGCATGCTGTCGATCCTGC
196 GA-AGAGGCAGAATGCGCAAGCCAGGGACCAGCCTA--ACCCCTCCTG--TGCTGTCGATCCTGC
* * *
31019305 TGTCGCAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
256 TAT-GCAACCCTCGGTCTGGTCT-GATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACC
* ** * * *
31019369 CACGAAATGAGCGTTTCGGCACTGAGCCGACTGGAGAGGTATAAT
319 CACGAAACGAGCGTTAGGGCGCTGAGCTGACTGGAGAGGCATAAT
31019414 GCGCAAGTCG
Statistics
Matches: 771, Mismatches: 63, Indels: 57
0.87 0.07 0.06
Matches are distributed among these distances:
495 1 0.00
496 456 0.59
499 1 0.00
500 3 0.00
502 1 0.00
504 3 0.00
505 1 0.00
506 2 0.00
507 1 0.00
508 3 0.00
510 1 0.00
512 4 0.01
515 21 0.03
516 249 0.32
517 23 0.03
518 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (513 bp):
GAGAGGCATAATACGTAAGCCGAGGTTCAGCTCGGTCCCCCCTGCATGCTGCCGATCCTGCTATT
GGTCCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
ACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCTGGCC
GAAGAGGCAGAATGCGCAAGCCAGGGACCAGCCTAACCCCTCCTGTGCTGTCGATCCTGCTATGC
AACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
CGAGCGTTAGGGCGCTGAGCTGACTGGAGAGGCATAATCCACAAGCCGAGGATCGGCCCGATCCC
TCTCTGCGTGCTGCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATG
CCTAGGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACTTGACAGGTCGGCCA
Found at i:31018979 original size:26 final size:26
Alignment explanation
Indices: 31018936--31018990 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
31018926 CTCTGCGTGC
31018936 TGCTTAGACTGAGAATGAACTCCGTA
1 TGCTTAGACTGAGAATGAACTCCGTA
* *
31018962 TGCTTAGACT-AGGGATGAACTCTGTA
1 TGCTTAGACTGA-GAATGAACTCCGTA
31018988 TGC
1 TGC
31018991 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TGCTTAGACTGAGAATGAACTCCGTA
Found at i:31019185 original size:26 final size:26
Alignment explanation
Indices: 31019147--31019199 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31019137 CTGATCCGAT
31019147 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31019173 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31019199 C
1 C
31019200 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31019440 original size:158 final size:157
Alignment explanation
Indices: 31019173--31019674 Score: 436
Period size: 158 Copynumber: 3.2 Consensus size: 157
31019163 ACTCCATATG
* * * *
31019173 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGC
* ** * * * * *
31019238 TGGTCAGAGAGGCAGAATGCGCAAGCCACA--AACCAGC-CAGGTCCCCCCTGCATGCTGTCGAT
65 CGACCCGAGAGGCAAAATGCGCAAGCCA-AGGATCGA-CTC-GGTCCCCACTGCATGCTGTCGAT
*
31019300 CCTGCTGTCGCAACCCTCGGTCTGGTTCGAT
127 CCTGCTGTCGCAACCCTCAGTCTGGTTCGAT
* * * *
31019331 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTTC-GGCACTGAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCG-TGCGGGCACTCAG
** * * * ** *
31019395 CCGACTGGAGAGGTATAATGCGCAAGTCGGGGATCGACTCGGTCCCCTTCTGCATGCTGTCGATC
64 CCGACCCGAGAGGCAAAATGCGCAAGCCAAGGATCGACTCGGTCCCC-ACTGCATGCTGTCGATC
* * * * ** * **
31019460 CCGCTGCCACAACCCTCAGTCCGACTGGGG
128 CTGCTGTCGCAACCCTCAGTCTGGTTCGAT
* * ** * *
31019490 CTTAGACATGGAATGGACTCCCTACACCTAAGCCAACCCACGAAAAGGGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGC
* * * * *
31019555 CGACCCGAGAGGCAAAATGCGCAAGCCAAGGATCGGCTCGATCCCCACTACATGTTATCGATCCT
65 CGACCCGAGAGGCAAAATGCGCAAGCCAAGGATCGACTCGGTCCCCACTGCATGCTGTCGATCCT
* * *
31019620 GCTATCGCAACCCTCAATCTGGTCCGAT
130 GCTGTCGCAACCCTCAGTCTGGTTCGAT
* * *
31019648 GTTAGATTAGGAATGAACTCTGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
31019675 TTAGACTAGG
Statistics
Matches: 262, Mismatches: 73, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
157 2 0.01
158 130 0.50
159 129 0.49
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGCC
GACCCGAGAGGCAAAATGCGCAAGCCAAGGATCGACTCGGTCCCCACTGCATGCTGTCGATCCTG
CTGTCGCAACCCTCAGTCTGGTTCGAT
Found at i:31019588 original size:159 final size:158
Alignment explanation
Indices: 31019172--31019618 Score: 409
Period size: 159 Copynumber: 2.8 Consensus size: 158
31019162 AACTCCATAT
* *
31019172 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAAGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* ** * * *
31019237 CTGGTCAGAGAGGCAGAATGCGCAAGCCACA--AACCAGC-CAGGTCCCCCCTGCATGCTGTCGA
66 CCGACCAGAGAGGCAAAATGCGCAAGCCA-AGGATCGA-CTC-GGTCCCCCCTGCATGCTGTCGA
* * * * * **
31019299 TCCTGCTGTCGCAACCCTCGGTCTGGTTCGA
128 TCCCGCTGCCACAACCCTCAGTCCGACTCGA
* * * * * * *
31019330 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTTC-GGCACTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCG-TGCGGGCGCTC
** * * * ** *
31019393 AGCCGACTGGAGAGGTATAATGCGCAAGTCGGGGATCGACTCGGTCCCCTTCTGCATGCTGTCGA
64 AGCCGACCAGAGAGGCAAAATGCGCAAGCCAAGGATCGACTCGGTCCCC-CCTGCATGCTGTCGA
* *
31019458 TCCCGCTGCCACAACCCTCAGTCCGACTGGG
128 TCCCGCTGCCACAACCCTCAGTCCGACTCGA
* * ** *
31019489 GCTTAGACATGGAATGGACTCCCTACACCTAAGCCAACCCACGAAAAGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * * * *
31019554 CCGACCCGAGAGGCAAAATGCGCAAGCCAAGGATCGGCTCGATCCCCACTACATGTTATCGATCC
66 CCGACCAGAGAGGCAAAATGCGCAAGCCAAGGATCGACTCGGTCCCCCCTGCATGCTGTCGATCC
31019619 TGCTATCGCA
Statistics
Matches: 226, Mismatches: 55, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 95 0.42
159 129 0.57
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAAAATGCGCAAGCCAAGGATCGACTCGGTCCCCCCTGCATGCTGTCGATCC
CGCTGCCACAACCCTCAGTCCGACTCGA
Found at i:31019678 original size:26 final size:26
Alignment explanation
Indices: 31019642--31019700 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
31019632 CTCAATCTGG
*
31019642 TCCG-ATG-TTAGATTAGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
* *
31019666 TCTGTATGCTTAGACTAGGGATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
31019692 TCCGTATGC
1 TCCGTATGC
31019701 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 23 0.79
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TCCGTATGCTTAGACTAGGAATGAAC
Found at i:31019901 original size:186 final size:182
Alignment explanation
Indices: 31019489--31020043 Score: 623
Period size: 184 Copynumber: 3.0 Consensus size: 182
31019479 TCCGACTGGG
* * * ** * *
31019489 GCTTAGACATGGAATGGACTCCCTACACCTAAGCCAACCCACGAAAAGGGCGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
31019554 CCGACCCGAGAGGCAAAATGCGCAAGCCAAGGATCGGCTCGATCCCCACTACATGTTATCGATCC
66 TCGA-CCGAGAGGCAGAATGCGCAAGCCAAGGATCGGCTCG-TCCCCCCTGCATGCTATCGATCC
** * * * * *
31019619 TGCTATCGCAACCCTCAATCTGGTCCGATGTTAGATTAGGAATGAAC-TCTGTAT
129 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-GTAT
* * * *
31019673 GCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCA
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * *
31019737 GTCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCAGTCCCCCCTGCGTGCTGTCGATC
65 GTCGACCG-AGAGGCAGAATGCGCAAGCCAAGGATCGGCTC-GTCCCCCCTGCATGCTATCGATC
* *
31019802 CTGCTGCCGCAACCCTCGGTCCGGTCTGATTCTTAGCACTGGGAATGAACTTCGTAT
128 CTGCTGCCGCAACCCTCAGTCCGGTCCGA-TCTTAG-ACTGGGAATGAACTTCGTAT
* *
31019859 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
31019924 TCGGCCGGAGAGGCAGAATG-GCAAGCCAAGGA-CTGGCCCGGTCCCCCCTGCATGCTATTGATC
66 TCGACC-GAGAGGCAGAATGCGCAAGCCAAGGATC-GGCTC-GTCCCCCCTGCATGCTATCGATC
** * *
31019987 CTGCTGCTACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
128 CTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
31020042 GC
1 GC
31020044 CTAAGTTAAC
Statistics
Matches: 309, Mismatches: 53, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
183 23 0.07
184 130 0.42
185 66 0.21
186 87 0.28
187 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (182 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGAGAGGCAGAATGCGCAAGCCAAGGATCGGCTCGTCCCCCCTGCATGCTATCGATCCTG
CTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:31021347 original size:26 final size:26
Alignment explanation
Indices: 31021309--31021361 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31021299 GGCTCAAAAT
31021309 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31021335 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31021361 C
1 C
31021362 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31021666 original size:159 final size:158
Alignment explanation
Indices: 31021487--31021774 Score: 348
Period size: 160 Copynumber: 1.8 Consensus size: 158
31021477 TCTGGTCAAT
** * * *
31021487 CTTAGACTGGGAATGAACT-CCTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAAC
* *** *
31021551 CGGTCGAAGAGG-AATAATACGCAAGTTGGGGATCAAGCCCGATCCCCTTCTACGTGCTGTCAAT
66 CAGTCGAAGAGGCAA-AATACGCAAGCCAGGGATC-AGCCCGATCCCCCT-TACGTGCTGTCAAT
31021615 CCCGTTGCCACAACCTTCGATCCTACTGGGG
128 CCCGTTGCCACAACCTTCGATCCTACTGGGG
* * * * *
31021646 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAATGGGCATGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
* * * *
31021710 CCAGTCGGAGAGGCAAAATTCGCAAGCCAGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCC
65 CCAGTCGAAGAGGCAAAATACGCAAGCCAGGGATCAGCCCGATCCCCCTTACGTGCTGTCAATCC
31021775 TGCTGTCGCA
Statistics
Matches: 107, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
158 15 0.14
159 29 0.27
160 61 0.57
161 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAAC
CAGTCGAAGAGGCAAAATACGCAAGCCAGGGATCAGCCCGATCCCCCTTACGTGCTGTCAATCCC
GTTGCCACAACCTTCGATCCTACTGGGG
Found at i:31021817 original size:158 final size:156
Alignment explanation
Indices: 31021335--31021830 Score: 415
Period size: 158 Copynumber: 3.2 Consensus size: 156
31021325 ACTCCGTATG
* * *
31021335 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGCAAGCGTGC-GGCGCT--CA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTACCA
* * * * *
31021397 GTCGGGGAGGGCAGAATGT-GTAAGCCAGGGATCAGCCTGGTCCCCC-TACGTGCTGTCGATCCT
66 GTCGGAGA-GGCAAAAT-TCGCAAGCCAGGGATCAGCCCGATCCCCCTTACGTGCTGTCGATCCT
* * *
31021460 ACT-ACTGCAACCATCGGTCTGGT-CAAT
129 GCTGAC-GCAACCATCGGTCTGATCCGAT
* ** *
31021487 CTTAGAC-TGGGAATGAACT-CCTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-A-
* * * *** * *
31021550 CCGGTCGAAGAGG-AATAATACGCAAGTTGGGGATCAAGCCCGATCCCCTTCTACGTGCTGTCAA
63 CCAGTCGGAGAGGCAA-AATTCGCAAGCCAGGGATC-AGCCCGATCCCCCT-TACGTGCTGTCGA
* * * * * * * **
31021614 TCCCGTTGCCACAACCTTCGATCCT-A-CTGGGG
125 TCCTGCTGACGCAACCATCGGT-CTGATC-CGAT
* * * *
31021646 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAATGGGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT--AC
*
31021711 CAGTCGGAGAGGCAAAATTCGCAAGCCAGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCT
64 CAGTCGGAGAGGCAAAATTCGCAAGCCAGGGATCAGCCCGATCCCCCTTACGTGCTGTCGATCCT
* *
31021776 GCTGTCGCAACCCTCGGTCTGATCCGAT
129 GCTGACGCAACCATCGGTCTGATCCGAT
*
31021804 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCCTATGC
31021831 TTAGACTGAG
Statistics
Matches: 262, Mismatches: 60, Indels: 38
0.73 0.17 0.11
Matches are distributed among these distances:
151 29 0.11
152 22 0.08
154 1 0.00
155 15 0.06
156 17 0.06
157 3 0.01
158 79 0.30
159 33 0.13
160 60 0.23
161 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTACCA
GTCGGAGAGGCAAAATTCGCAAGCCAGGGATCAGCCCGATCCCCCTTACGTGCTGTCGATCCTGC
TGACGCAACCATCGGTCTGATCCGAT
Found at i:31022694 original size:158 final size:157
Alignment explanation
Indices: 31022302--31022694 Score: 412
Period size: 158 Copynumber: 2.5 Consensus size: 157
31022292 CTGACCTGGT
* * *
31022302 CCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTTAGTCCAGTCCGATCTTAGACTGGGAATG
1 CCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTTAGTCCAGTCCGATCTTAGACTAGGAATG
** * * * * * * *
31022367 AACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCAACGGAGACGCATA
66 AACTTCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCCAACAGAAACGCAGA
** *
31022432 ATGCGTAAGTCGGGGATCAGCTCGATC
131 ATGCACAAGTCGGGGATCAGCCCGATC
* * * * * * ** *
31022459 CCCCTCTGCATGCTATCGGTCCCGCTATCACAACCCTTGGTCCGACTGGGGA--TTAGACAAGGA
1 CCCC-CTGCATGCTATCGATCCTGCTGTCGCAACCCTTAGTCC-AGT-CCGATCTTAGACTAGGA
* * * * ** *
31022522 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGTCGGCTAGAAAGG
63 ATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCCAAC-AGAAACG
*
31022587 CAGAATGCACAAGTCGGGGATCGGCCCGATC
127 CAGAATGCACAAGTCGGGGATCAGCCCGATC
* * * *
31022618 CCCCCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTTGACTAGGAATG
1 CCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTTAGTCCAGTCCGATCTTAGACTAGGAATG
31022683 AACTTCATATGC
66 AACTTCATATGC
31022695 TTAGACTGTG
Statistics
Matches: 184, Mismatches: 46, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
156 2 0.01
157 6 0.03
158 138 0.75
159 36 0.20
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (157 bp):
CCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTTAGTCCAGTCCGATCTTAGACTAGGAATG
AACTTCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCCAACAGAAACGCAGA
ATGCACAAGTCGGGGATCAGCCCGATC
Found at i:31023452 original size:26 final size:26
Alignment explanation
Indices: 31023401--31023453 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31023391 GGCTCAAAAT
**
31023401 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31023427 CTTAGACAT-GGAATGGACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31023453 C
1 C
31023454 CTAGGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31023779 original size:25 final size:26
Alignment explanation
Indices: 31023745--31023796 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
31023735 CCGGTCTGAT
31023745 CTTAGACTGGGAATGAACTT-GTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
31023770 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31023796 C
1 C
31023797 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31025285 original size:26 final size:26
Alignment explanation
Indices: 31025247--31025299 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31025237 GGCTCAAAAT
31025247 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31025273 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31025299 C
1 C
31025300 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31025773 original size:158 final size:158
Alignment explanation
Indices: 31025273--31025773 Score: 512
Period size: 159 Copynumber: 3.2 Consensus size: 158
31025263 ACTCCATATG
* * *
31025273 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAATGAGCGTG-CGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCCGGCGCTCAGC
* * * *
31025337 CGGTCGAAGAGGCAGAATGCACAAGCCG-GGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGCGCAAG-CGAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *** * *
31025401 TGCTACCATAACCCT-TAATTCAGTCTGAT
130 TGCTGCCACAACCCTCGGTTTGACTC-GAT
* * * * * * * *
31025430 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCGACTCATGAAACGAGCGTGCTGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCCGGCGCTCAG
* * *
31025494 CCGGCCGAAGAGGCATAATGCGCAAGC-AGGGGATCGGCCC-AGTCCCCCTCTGCATGCTGTCGG
65 CCGGCCGAAGAGGCAGAATGCGCAAGCGA-GGGATCGGCCCGA-TCCCCC-CTGCGTGCTGTCGA
* * * **
31025557 TCCTGCTGCCACAACCCTCGGTCTGGCTGGGG
127 TCCTGCTGCCACAACCCTCGGTTTGACTCGAT
* * *
31025589 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGCGTGCCGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCCGGCGCTCAGC
* * * **
31025654 CAGCCGAAGAGGCAGAATGCGTAAGCGAGGGATCGGCCCGATCCCTCCTGCGTGCTGTCGATTTT
66 CGGCCGAAGAGGCAGAATGCGCAAGCGAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* * * *
31025719 GCTGTCGCAACCCTCGGTTTGATTCAAT
131 GCTGCCACAACCCTCGGTTTGACTCGAT
31025747 CTTAGATCA-GGAATGAACTCCGTATGC
1 CTTAGA-CATGGAATGAACTCCGTATGC
31025774 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 59, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 44 0.16
158 103 0.38
159 121 0.44
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCCGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCGAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTTTGACTCGAT
Found at i:31025788 original size:26 final size:26
Alignment explanation
Indices: 31025756--31025851 Score: 122
Period size: 26 Copynumber: 3.7 Consensus size: 26
31025746 TCTTAGATCA
31025756 GGAATGAACTCCGTATGCTTAGACTG
1 GGAATGAACTCCGTATGCTTAGACTG
* * *
31025782 GGGATGAACTCTGTATGCCTAGACTG
1 GGAATGAACTCCGTATGCTTAGACTG
* *
31025808 GGAATGAACTCTGTATGCTTAGCCAT-
1 GGAATGAACTCCGTATGCTTAGAC-TG
*
31025834 GGAATGAAGTCCGTATGC
1 GGAATGAACTCCGTATGC
31025852 CTAAGCCAAC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 60 0.98
27 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACTG
Found at i:31025841 original size:52 final size:52
Alignment explanation
Indices: 31025756--31025854 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
31025746 TCTTAGATCA
* *
31025756 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAGACTG
1 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGACTG
* * *
31025808 GGAATGAACTCTGTATGCTTAGCCAT-GGAATGAAGTCCGTATGCCTA
1 GGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTA
31025855 AGCCAACCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
52 40 0.98
53 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (52 bp):
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGACTG
Found at i:31026161 original size:159 final size:159
Alignment explanation
Indices: 31025831--31026273 Score: 506
Period size: 159 Copynumber: 2.8 Consensus size: 159
31025821 TATGCTTAGC
* * *
31025831 CATGGAATGAAGTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTC-AGTC
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-TC
* *
31025895 GGAGAGGC-TGAATGCGCAAGTCGAGGATCGGCCAGGTCCCCCT-TGCGTGCTATCGATCCTGCT
65 GGAGAGGCAT-AATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCT
* *
31025958 GCCACAACCCTCAGTCCGGTCTGATCTTAGA
129 GCCACAACCCTCAGTCCGGTCTGAGCTTACA
* * * * * * *
31025989 C-TAGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGATC
1 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATC
* * *
31026053 GAAGAGGCATAATGCGCAAGTCGGGGA-CTGGCCCGATCCCCCTCTGCGTGCTACCGAT-CTCGC
65 GGAGAGGCATAATGCGCAAGTCGAGGATC-GGCCCGGTCCCCCTCTGCGTGCTACCGATCCT-GC
* *
31026116 TGCCACAACCCTCGGTCCGG-CTGGGGCTTACA
128 TGCCACAACCCTCAGTCCGGTCT-GAGCTTACA
* * * * * *
31026148 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGTCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCG
* * * **
31026213 GAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTTCGTGCTGTCGATCCTGC
66 GAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGC
31026274 ACCTGCAACC
Statistics
Matches: 235, Mismatches: 40, Indels: 20
0.80 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 103 0.44
159 128 0.54
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCG
GAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGC
CACAACCCTCAGTCCGGTCTGAGCTTACA
Found at i:31026336 original size:26 final size:26
Alignment explanation
Indices: 31026300--31026352 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31026290 CCAGTCCGAT
*
31026300 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
31026326 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31026352 C
1 C
31026353 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31027060 original size:26 final size:26
Alignment explanation
Indices: 31027022--31027074 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31027012 GGCTCAAAAT
31027022 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31027048 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31027074 C
1 C
31027075 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31027671 original size:159 final size:158
Alignment explanation
Indices: 31027047--31027635 Score: 410
Period size: 158 Copynumber: 3.7 Consensus size: 158
31027037 AACTCCGTAT
* * * * * * ** *
31027047 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAA
* ** * * ** * ** * *
31027112 CCGGCCAGAGAGGCAGAATATGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCAGGCATGCTACCAATCC
* * * * ***
31027177 TACTACCGCAACCCTCGGTCC-GATCCCA
131 CACTGCCACAACCCTCGGTCCAGCT-GGG
* * * * * * * * ** *
31027205 TCTTAGAC-TGGGAATGAACTCCGTATG-CATAAGTCAACCCACGAAACGAGCGTACGAGTGCTG
1 GCTTAGACAT-GGAATGAACTCCCTATGAC-TAAGCCAACCCATGAAACGGGCATGCGGGCACTC
* * * * * * * * *** * * ***
31027268 AGCCAGCCGAAGAGGCATAATGCGTAAACCGGGGATCAGCCTGGTCCCCCTCTACGTGCTGCTGG
64 AACCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCC-AGGCATGCTACCAA
* * **
31027333 TCCCGCTACCACAACCCTCGGTCTGGCTGGG
128 TCCCACTGCCACAACCCTCGGTCCAGCTGGG
* * * *
31027364 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAA
* * * * * ** *
31027429 CCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCTCGGTCCCTCAGGTGTGCTACCGATCC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCAGGCATGCTACCAATCC
*
31027494 CACTGCCACAACCCTCGGTCCAGCTGTG
131 CACTGCCACAACCCTCGGTCCAGCTGGG
* **
31027522 GCTTAGACATGGAATGAACTCCTTATGACTAAGCCAACCCATGAAACGGGCATGCAGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGC-GGGCACTCA
** *
31027587 GTCGGCTGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCC
65 ACCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCC
31027636 CTGCATTCTG
Statistics
Matches: 343, Mismatches: 81, Indels: 13
0.78 0.19 0.03
Matches are distributed among these distances:
157 2 0.01
158 173 0.50
159 164 0.48
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAA
CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCAGGCATGCTACCAATCC
CACTGCCACAACCCTCGGTCCAGCTGGG
Found at i:31027686 original size:159 final size:158
Alignment explanation
Indices: 31027047--31027708 Score: 569
Period size: 159 Copynumber: 4.2 Consensus size: 158
31027037 AACTCCGTAT
* *
31027047 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* ** * ** *
31027112 CCGGCCAGAGAGGCAGAATATGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCC
* * ** * **
31027177 TACTACCGCAACCCTCGGTCCGATCCCA
131 CACTACCACAACCCTCGGTATGGTCTGA
* * * * * * *
31027205 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCA
* * * * * * * * * *
31027269 GCCAGCCGAAGAGGCATAATGCGTAAACCGGGGATCAGCCTGGTCCCCCTCTACGTGCTGCTGGT
65 GCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCC-CTGCATGCTACCGAT
* * *
31027334 CCCGCTACCACAACCCTCGGTCTGG-CTGGG
129 CCCACTACCACAACCCTCGGTATGGTCT-GA
* * * * * * ** *
31027364 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
* * * ** **
31027429 CCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCTCGGTCCCTCAGGTGTGCTACCGATCC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCC
* * *
31027494 CACTGCCACAACCCTCGGTCCA-GCTGTG-
131 CACTACCACAACCCTCGGT--ATGGTCTGA
* * * *
31027522 GCTTAGACATGGAATGAACTCCTTATGACTAAGCCAACCCATGAAACGGGCATGCAGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGC-GGGTGCTCA
* * * * * * * *
31027587 GTCGGCTGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCTGCATTCTGCCAATT
65 GCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATC
** ** *
31027652 TTACTGTCGCAACCCTCGGTATGGTCTGA
130 CCACTACCACAACCCTCGGTATGGTCTGA
*
31027681 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31027709 TTAGATTGGG
Statistics
Matches: 393, Mismatches: 100, Indels: 21
0.76 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 174 0.44
159 215 0.55
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCC
CACTACCACAACCCTCGGTATGGTCTGA
Found at i:31027718 original size:26 final size:26
Alignment explanation
Indices: 31027682--31027734 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31027672 ATGGTCTGAT
31027682 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
31027708 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31027734 C
1 C
31027735 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31028068 original size:170 final size:171
Alignment explanation
Indices: 31027720--31028075 Score: 398
Period size: 171 Copynumber: 2.1 Consensus size: 171
31027710 TAGATTGGGG
* * *
31027720 ATGAACT-TCGTATGCCTAAGTCAACCAACGAAATGAGCATGCGGGCGCTTAGTCAGCCAGAGAG
1 ATGAACTCT-GTATGCCTAAGCCAACCAACGAAATGAGCATGCAGGCGCTCAGTCAGCCAGAGAG
* * *
31027784 GCATAATGCATAAACCGCGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTC
65 GCATAATGCATAAACCGCGGATCAGCCCGATCCCCCTCTGCATACTGCCGATCCCACTGTCAGTC
* ****
31027849 CTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGA
130 CTGCTGCCACAACCCTCGATCCGATCCAAGCTTAGACATGGA
* * **
31027891 ATGAACTCTGTATGCCTAAGCCAACCGATGAAATGATTATGCAGGCGCTCAGTC-GACCAGAGAG
1 ATGAACTCTGTATGCCTAAGCCAACCAACGAAATGAGCATGCAGGCGCTCAGTCAG-CCAGAGAG
* * * * * ** **
31027955 GCATAATGCGTAAGCCAG-GGATCGGCCCGGTCCCCC-CTGTATACTGTTGATCCTGCTG-CTAG
65 GCATAATGCATAAACC-GCGGATCAGCCCGATCCCCCTCTGCATACTGCCGATCCCACTGTC-AG
* * *
31028017 TCTTGCTGCCACAACCCTCGATCTGATCCAATCTTAGACATGGA
128 TCCTGCTGCCACAACCCTCGATCCGATCCAAGCTTAGACATGGA
31028061 ATGAACTCTGTATGC
1 ATGAACTCTGTATGC
31028076 TTAGACATGG
Statistics
Matches: 154, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
169 1 0.01
170 68 0.44
171 83 0.54
172 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (171 bp):
ATGAACTCTGTATGCCTAAGCCAACCAACGAAATGAGCATGCAGGCGCTCAGTCAGCCAGAGAGG
CATAATGCATAAACCGCGGATCAGCCCGATCCCCCTCTGCATACTGCCGATCCCACTGTCAGTCC
TGCTGCCACAACCCTCGATCCGATCCAAGCTTAGACATGGA
Found at i:31028078 original size:26 final size:26
Alignment explanation
Indices: 31028049--31028101 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31028039 CTGATCCAAT
*
31028049 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31028075 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31028101 C
1 C
31028102 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31028346 original size:367 final size:367
Alignment explanation
Indices: 31027680--31028358 Score: 805
Period size: 367 Copynumber: 1.9 Consensus size: 367
31027670 GTATGGTCTG
* * * *
31027680 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * *
31027745 CAACGAAATGAGCATGCGGGCGCTTAGTCAGCCAGAGAGGCATAATGCATAAACCGCGGATCAGC
66 CAACAAAACAAGCATGCGGGCGCTCAGTCAGCCAGAAAGGCAGAATGCACAAACCGCGGATCAGC
** *
31027810 CCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCTGCTGCCACAACCCTCGGTCCGATT
131 CCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCTGCTGCCACAACCCTCGACCCGATC
* * * * * * * * *
31027875 GGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGATTATGCAGGCGCT
196 CGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTATACAGGCGAT
* * *
31027940 CAGTCGACCAGAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGTATACTGTTGA
261 CAGTCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGTATACTGTTGA
31028005 TCCTGCTGCTAGTCTTGCTGCCACAACCCTCGATCTGATCCA
326 TCCTGCTGCTAGTCTTGCTGCCACAACCCTCGATCTGATCCA
*
31028047 ATCTTAGACAT-GGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
31028110 ACCCACAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAAAGGCAGAATGCACAAGCCGGGGATCA
64 ACCAACAAAACAAGCATGCGGGCGCTCAGTCAGCCAGAAAGGCAGAATGCACAAACCGCGGATCA
* * * *** ** *
31028175 GCCCGGTCTCTCTCTGCGTGCTGCCGATCTTGCTG-CTGGTCCTGCTGCTGCAACCCTTGACCC-
129 GCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTC-GGTCCTGCTGCCACAACCCTCGACCCG
* * *
31028238 AGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGG
193 A-TCCGAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTATACAG
* * * * *
31028302 GCGATCAG-CAGGCCGGAGAGGTAAAATGCGCAAGTC-GAGGATCGGCCTGATCCCCCC
256 GCGATCAGTC-GACCAGAGAGGCAAAATGCGCAAGCCAG-GGATCGGCCCGATCCCCCC
31028359 CTACGTGCTG
Statistics
Matches: 256, Mismatches: 49, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
366 5 0.02
367 249 0.97
368 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (367 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAAC
CAACAAAACAAGCATGCGGGCGCTCAGTCAGCCAGAAAGGCAGAATGCACAAACCGCGGATCAGC
CCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCTGCTGCCACAACCCTCGACCCGATC
CGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTATACAGGCGAT
CAGTCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGTATACTGTTGA
TCCTGCTGCTAGTCTTGCTGCCACAACCCTCGATCTGATCCA
Found at i:31028494 original size:159 final size:158
Alignment explanation
Indices: 31028243--31028740 Score: 489
Period size: 159 Copynumber: 3.1 Consensus size: 158
31028233 GACCCAGTCC
** * *
31028243 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGATC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTG
* * *
31028308 AGCAGGCCGGAGAGGTAAAATGCGCAAGTCGAGGATCGGCCTGATCCCCCCCTACGTGCTGTCGA
66 AGCAGGCCGAAGAGGCAAAATGCGCAAG-CGAGGATCGGCCTGGTCCCCCCCTAC-TGCTGTCGA
31028373 TCTC-GCTACAGCAACCCTC-ATTTCGGTCT
129 TCTCTGCT-CAGCAACCCTCGATTTCGGTCT
* * *
31028402 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTG
* * * * * * * *
31028467 AGCCGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCCTGGTCCCCCTCTATCTGCTGCCGG
66 AGCAGGCCGAAGAGGCAAAATGCGCAAGC-GAGGATCGGCCTGGTCCCCCCCTA-CTGCTGTCGA
31028532 TCCTACTGC-CA-CAACCCTCGATTT-GG-CT
129 T-CT-CTGCTCAGCAACCCTCGATTTCGGTCT
* * * *
31028560 GGGTCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACGGGCGC
1 -GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGC
* * * ** * * * *
31028624 TTG-GCTGGTCGAAGAGGCAGAATGCATAAGCCAGGGATTGGCCCGGT-CCCCCCTGCATGCTGT
64 -TGAGCAGGCCGAAGAGGCAAAATGCGCAAGCGA-GGATCGGCCTGGTCCCCCCCTAC-TGCTGT
* *
31028687 CGATCCTACTGC-C-GTAACCCTCGA-TTCGATCT
126 CGAT-CT-CTGCTCAGCAACCCTCGATTTCGGTCT
31028719 GATCTTAGACTGGGAATGAACT
1 GATCTTAGACTGGGAATGAACT
31028741 TTGTATGCTT
Statistics
Matches: 281, Mismatches: 43, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
157 4 0.01
158 55 0.20
159 207 0.74
160 12 0.04
161 1 0.00
162 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTG
AGCAGGCCGAAGAGGCAAAATGCGCAAGCGAGGATCGGCCTGGTCCCCCCCTACTGCTGTCGATC
TCTGCTCAGCAACCCTCGATTTCGGTCT
Found at i:31035898 original size:26 final size:26
Alignment explanation
Indices: 31035869--31035921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31035859 CTCATCCGAT
*
31035869 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31035895 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31035921 C
1 C
31035922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31036981 original size:26 final size:26
Alignment explanation
Indices: 31036930--31036982 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31036920 CCAGTCTGAT
* *
31036930 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAAATCCATATG
*
31036956 CTTAGACAT-GGAATGAAATCCGTATG
1 CTTAGAC-TGGGAATGAAATCCATATG
31036982 C
1 C
31036983 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:31036992 original size:355 final size:352
Alignment explanation
Indices: 31036408--31037065 Score: 818
Period size: 355 Copynumber: 1.9 Consensus size: 352
31036398 CCGGCTGGGC
* * * * * * *
31036408 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAGGAAATGAGCGTAAGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATAAGAGCGCTCAAC
** * * *
31036473 CGGCCGGAGAGGCAGAATGCGCAAGCGACGGATTGACCCGGTCCCCCTGCATGCTATCGATCCTA
66 CGGAAGGAGAGGCAGAATGCACAAGCGACGGATAGACCCGATCCCCCTGCATGCTATCGATCCTA
** * * *
31036538 TACTGGTCCTACTGCTGTAACCTTGGACCGGTCTGATCTTAGACTAGGAATGAACACCGTATGCT
131 TACTGGTCCTACTGCTACAACCTTCGACCAGTCTGATCTTAGACTAGGAATGAACACCATATGCT
* ** * *
31036603 TAGACATGGAATGAACTTTGTATGCCTCAGCCAACCCATGAAACGAGCGAACAGGCACTCAGCCG
196 TAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCAGGAAACGAGCGAACAGGCACTCAGCCG
* * *
31036668 GTCGGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCAGTCCCTTCCTCCGTGCTGTCGATCCTG
261 GTCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCAGTCCCTTCCTCCGTGCTGTCGATCCTG
31036733 CTACCGCAACCCTCGGTCTGGTTCGAT
326 CTACCGCAACCCTCGGTCTGGTTCGAT
* ** *
31036760 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGAGCGCTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATAAGAGCGCTCAA
* * *
31036824 CCGGAAGGAGAGGCATAATGCACAAGCCGA-GGATAGACTCGATCCCCCTCTGCGTGCTATCGAT
65 CCGGAAGGAGAGGCAGAATGCACAAG-CGACGGATAGACCCGAT-CCCC-CTGCATGCTATCGAT
* * * * * *
31036888 CCTGTGCTGGTCCTACT-ATCACAACCTTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTA
127 CCTATACTGGTCCTACTGCT-ACAACCTTCGA-CCAGTCTGATCTTAGACTAGGAATGAACACCA
* * ** * *
31036952 TATGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCTAGGAAACGGGCGTGCGGGCGCT
190 TATGCTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCAGGAAACGAGCGAACAGGCACT
* * *
31037017 CAGCCGGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCCAGTCCC
255 CAGCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCAGTCCC
31037066 CCCTACATGC
Statistics
Matches: 253, Mismatches: 47, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
351 1 0.00
352 83 0.33
353 8 0.03
354 37 0.15
355 124 0.49
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.20
Consensus pattern (352 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATAAGAGCGCTCAAC
CGGAAGGAGAGGCAGAATGCACAAGCGACGGATAGACCCGATCCCCCTGCATGCTATCGATCCTA
TACTGGTCCTACTGCTACAACCTTCGACCAGTCTGATCTTAGACTAGGAATGAACACCATATGCT
TAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCAGGAAACGAGCGAACAGGCACTCAGCCG
GTCGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCAGTCCCTTCCTCCGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCTGGTTCGAT
Found at i:31037155 original size:26 final size:26
Alignment explanation
Indices: 31037126--31037178 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31037116 CCAGTTCAAT
31037126 CTTAGAC-TGGTAATGAACTCCATATG
1 CTTAGACATGG-AATGAACTCCATATG
* *
31037152 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
31037178 C
1 C
31037179 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:31037755 original size:159 final size:159
Alignment explanation
Indices: 31037336--31038811 Score: 969
Period size: 159 Copynumber: 9.2 Consensus size: 159
31037326 CCAACTGGGG
* *
31037336 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * *
31037400 CTGGCCGGAGAGGCAGAATGCGCAAG-TCGAGGATC-AGCTCGATCCCCCCTACGTGC-TGCTGA
65 CCAGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGA-CCCGATCCCCCCT---TGCGTGCTG-
* * * * *
31037462 TCCTGCTGCTAGTCTTGCTGCTGCAACCCTCAGTTCGGTCTGAT
124 T-C-GATCCT-G-C-TG-T-C-ACAACCCTCGGTCCGGTCTGAT
* * * * **
31037506 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGTGGTTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * *
31037571 CAGCCGGAGAGGCAGAATGTACAAGCTGGGGACCGATCCGATCCCCCCTTGTGTGCTGTCGATCC
66 CAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGATCC
*
31037636 TGCTATCACAACCCTCGGTCCGGTCTGAT
131 TGCTGTCACAACCCTCGGTCCGGTCTGAT
* *
31037665 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGGCGCT-AGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA-G
** * * * *
31037729 CCAGCCGGAGAGGCTTAATGCGCAAGCCT-GGGATCGACCCTATCCCCCTTTGTGCGCTGTCGAT
65 CCAGCCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGAT
* * * * * **
31037793 CCCGCCGCCACAACCCTCGATCCAG-CTAGGG
129 CCTGCTGTCACAACCCTCGGTCCGGTCT-GAT
* ** * * * * * *
31037824 CTTAGACAT-GGAATGAACTCCCCACGCCTAAGCCAACCTACGAAATGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * **** * *
31037888 -TAGCCCGGAGAGGTAGAATGCACAAGCCAAAGATCGGCCCGATCCACCCC-TGTGTGCTGTCGA
65 CCAG-CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCC-CCCCTTGCGTGCTGTCGA
* *
31037951 TCCTGCTGTCACAACCCTCGGTCTGGTCCGAT
128 TCCTGCTGTCACAACCCTCGGTCCGGTCTGAT
* * *
31037983 CTTAGACTGGAAATGAAC-TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
31038047 CCAGCCGAAAAGGCATAATGCGCAAGCCGGGGATC-AGCCCG-T-CCCTCTCTACGTGCTGCCGG
65 CCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGATCCCCCCT-TGCGTGCTGTCGA
* * ** * **
31038109 TCCCGCTGCCACAACTTTTC-GTCTGG-CTGGGG
128 TCCTGCTGTCACAAC-CCTCGGTCCGGTCT-GAT
* * * * * *
31038141 CTTAGACAT-GGAATGAACTCCCTATGCCCAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * **
31038205 CCAATCGGAGAGGCAGAATGCGCAAG-TCGGGGATC-AGTCTGGT-CCCCCATACATGCTACCGA
65 CCAGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGA-CCCGATCCCCCCTTGCGTGCTGTCGA
*
31038267 TCCTACTGCTGGTCCTGCTACTGCAACCCTCAGTCCGGTCTGAT
128 T-C--CTGCT-G---T-C-A---CAACCCTCGGTCCGGTCTGAT
* * * * *
31038311 CTTAGACTGGGAATGAACTTCGTATGCCCAAGCCAACCCATGAAACGAGAGTACGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
31038376 C-GATCGGAGAGGCAGAATACGTAAG-TAGGGACCGACCCGATCCCCCC-TGCGTGCTGTCGATC
66 CAG-CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGATC
** **
31038438 CTGCTGTCACATTCCTCGGTTTGGTCTGAT
130 CTGCTGTCACAACCCTCGGTCCGGTCTGAT
* * * * * * * * *
31038468 CTTAGATTTGGAATGAAC-TCTGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGTCACTGAA
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** *
31038532 CCGGTCAGAGAGGCATAATGCACAAGCAGGGGATCGGTCCGAT-CCCCCTCTGCATGCTGTCGAT
65 CCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCT-TGCGTGCTGTCGAT
* ** * **
31038596 CCCGCTACCACAACCCTCGGTCTGG-CTGGGG
129 CCTGCTGTCACAACCCTCGGTCCGGTCT-GAT
* * * * *
31038627 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** ** * * *
31038691 CCGGCTAGAGAGGCAGAATGCGCAAGCCAGGGATC-AGCCCGGTCCCCCC-TGCGTGCTGCCAAT
65 CCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGATCCCCCCTTGCGTGCTGTCGAT
* *
31038754 CCTGCTGTCGCAACCCTCAGTCCGGTCTGAT
129 CCTGCTGTCACAACCCTCGGTCCGGTCTGAT
** *
31038785 CACATACTGGGAATGAAC-TCTGTATGC
1 CTTAGACTGGGAATGAACTTC-GTATGC
31038812 TTAGACTGGG
Statistics
Matches: 1019, Mismatches: 231, Indels: 124
0.74 0.17 0.09
Matches are distributed among these distances:
156 5 0.00
157 94 0.09
158 195 0.19
159 460 0.45
160 19 0.02
161 6 0.01
162 3 0.00
163 1 0.00
164 1 0.00
165 5 0.00
166 7 0.01
167 4 0.00
168 6 0.01
169 22 0.02
170 187 0.18
171 4 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGATCC
TGCTGTCACAACCCTCGGTCCGGTCTGAT
Found at i:31039538 original size:26 final size:26
Alignment explanation
Indices: 31039500--31039552 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31039490 GGCTCAAAAT
*
31039500 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31039526 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31039552 C
1 C
31039553 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31039720 original size:26 final size:26
Alignment explanation
Indices: 31039684--31039736 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31039674 CCAGTCTGAT
*
31039684 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCATATG
* * *
31039710 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
31039736 C
1 C
31039737 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:31040089 original size:26 final size:26
Alignment explanation
Indices: 31040051--31040103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31040041 TCGGTCTGAT
31040051 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
31040077 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
31040103 C
1 C
31040104 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:31040107 original size:184 final size:185
Alignment explanation
Indices: 31039892--31040262 Score: 469
Period size: 184 Copynumber: 2.0 Consensus size: 185
31039882 TCCGGCTGGG
*
31039892 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGACACGAGCGTACGGGCAG-TCA
1 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC-GCTCA
* *
31039956 GCCGACCGGAGAGGCAGAATGTGAAAGTCAGGGATCGGCCCGATTCC-CCCTACGTGCTGCCAAT
65 GCCGACCGGAGAGGCAGAATGCGAAAGTCAGGGATCGGCCCGATCCCTCCCTACGTGCTGCCAAT
* * * ** *
31040020 CCTGC-AGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCAGTAT
130 CCTACTA-CCGCAACCCTCGGTCCGGCCCAATCTTACACTGGGAATGAACTCAGTAT
* * * * *
31040076 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCTGGCGCTCAG
1 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * * * * *
31040141 CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCTCCCTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGAAAGTCAGGGATCGGCCCGATCCCTCCCTACGTGCTGCCAATC
* * * *
31040206 CTACTATCGCAACCCTTGGTCCGGCCCAATCTTACACTGGGAATTAACTCTGTAT
131 CTACTACCGCAACCCTCGGTCCGGCCCAATCTTACACTGGGAATGAACTCAGTAT
31040261 GC
1 GC
31040263 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 96 0.61
185 60 0.38
186 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGAAAGTCAGGGATCGGCCCGATCCCTCCCTACGTGCTGCCAATC
CTACTACCGCAACCCTCGGTCCGGCCCAATCTTACACTGGGAATGAACTCAGTAT
Found at i:31040378 original size:159 final size:159
Alignment explanation
Indices: 31040086--31040578 Score: 404
Period size: 159 Copynumber: 3.1 Consensus size: 159
31040076 GCTTAGACAT
* * * * *
31040086 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCTGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
* * * * * * * * *
31040151 AGGCAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCTCCCTGCGTGCTGTCGATCCTACTATCGC
66 AGCCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTCCCTGCGTGCTGCCGATCCCACTACCAC
31040216 AACCCTTGGTCCGGCCCAATCTTACACTG
131 AACCCTTGGTCCGGCCCAATCTTACACTG
* * * * * *
31040245 GGAATTAACTCTGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGTTGAACCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
* * * *
31040310 AGCCATAATGCGCAAGCCAGGGATCGGCCCGATCCC-CCTCTGCGTGCTGCCGGTCCCGCTGCCA
66 AGCCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTCC-CTGCGTGCTGCCGATCCCACTACCA
* * ***** *
31040374 CAACCATCT-GTCCGACTGGGGCTTAGACAT-
130 CAACCCT-TGGTCCGGCCCAATCTTACAC-TG
* * * * * * * *
31040404 GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGCGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
** * * * * ** *
31040469 AGGTAGAATGCACAAGCC-GAGGATCGGCCCGGT-CC-CCCTGCGTGCTGCTGGTCCTGCTACCG
66 AGCCAGAATGCGCAAGCCAG-GGATCGGCCCGATCCCTCCCTGCGTGCTGCCGATCCCACTACCA
* ** * *
31040531 CAACCCTCGGTCCGATCCGATCTTAGACTG
130 CAACCCTTGGTCCGGCCCAATCTTACACTG
* *
31040561 GGAATGAAGTCCATATGC
1 GGAATGAACTCCGTATGC
31040579 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 56 0.21
158 7 0.03
159 197 0.75
160 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
AGCCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTCCCTGCGTGCTGCCGATCCCACTACCAC
AACCCTTGGTCCGGCCCAATCTTACACTG
Found at i:31040581 original size:26 final size:26
Alignment explanation
Indices: 31040552--31040604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31040542 CCGATCCGAT
*
31040552 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31040578 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31040604 C
1 C
31040605 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.