Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 337 of 402
Found at i:31040949 original size:26 final size:26
Alignment explanation
Indices: 31040920--31040970 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31040910 TGATCCGATC
31040920 TTAGAC-TGGGAATGAACTCCGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
31040946 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
31040971 CCTAAGCCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:31041070 original size:367 final size:354
Alignment explanation
Indices: 31040236--31041074 Score: 877
Period size: 367 Copynumber: 2.4 Consensus size: 354
31040226 CCGGCCCAAT
* * * * * ** *
31040236 CTTACACTGGGAATTAACTCTGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGTTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * * * *
31040301 CGGCCGGAGAGCCATAATGCGCAAGCCAGGGATCGGCCCGA-TC-CC-C--C-T-CTG-CG-T--
66 CGGCCGGAAAGGCATAATGCGCAAGCCGGGGACCAGCTCGATTCACCTCTACGTGCTGTCGATCC
* *
31040355 -GCTGCCGGTCCCGCTGCCACAACCATCTGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTA
131 CGCTGCCGGTCCCGCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * ** * *
31040419 TGCCTAAGCCAACCCACGAAACGGGTGTGCAGGCGCTCAGCCGACCAGAGAGGTAGAATGCACAA
196 TGCCTAAGCCAACCCACAAAACGAGCATCCAGGCGCTCAACCGACCAGAGAGGTAGAATGCACAA
*
31040484 GCCGAGGATCGGCCCGGTCCCCCTGCGTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCC
261 GCCGAGGATCAGCCCGGTCCCCCTGCGTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCC
*
31040549 GATCTTAGACTGGGAATGAAGTCCATATG
326 GATCTTAGACTGGGAATGAACTCCATATG
* * *
31040578 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * *
31040643 CGGCTGGAAAGGCATAATGCGTAAGCCGGGGATCAGCTCGATTCACCTCTGCGTGCTGTCGATCC
66 CGGCCGGAAAGGCATAATGCGCAAGCCGGGGACCAGCTCGATTCACCTCTACGTGCTGTCGATCC
* * * **
31040708 CGCTGCCGG-CCCTGCTGCCACAACCTTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCTTT
131 CGCTGCCGGTCCC-GCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* * ** **
31040772 ATGCCTAAGCCAACCCACAAAACGAGCATCCGGGCGCTCAACCGGCTGGAGAGGTAGAATGCGTA
195 ATGCCTAAGCCAACCCACAAAACGAGCATCCAGGCGCTCAACCGACCAGAGAGGTAGAATGCACA
** * *
31040837 AGCCGAGGATCAGTTCGGTACCCCCTGCGTGCTACCAATCCTGCTACTGGTCCTGCTATCGTAAC
260 AGCCGAGGATCAGCCCGGT-CCCCCTGCGTG---------CTG---CTGGTCCTGCTACCGCAAC
* *
31040902 CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
312 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
31040945 TTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAACGTA-CGTGTGGGTACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCACTCA
* * * *
31041008 ACCGGCCGGAGAGGCCA-AATGTGCAAGTCGGGGACC-GACTCGA-TCCCCGTCTACGTGCTGTC
64 ACCGGCCGGAAAGG-CATAATGCGCAAGCCGGGGACCAG-CTCGATTCACC-TCTACGTGCTGTC
31041070 GATCC
126 GATCC
31041075 TGTTACCACA
Statistics
Matches: 408, Mismatches: 58, Indels: 37
0.81 0.12 0.07
Matches are distributed among these distances:
342 90 0.22
343 2 0.00
344 2 0.00
345 1 0.00
347 1 0.00
348 1 0.00
349 3 0.01
350 2 0.00
351 1 0.00
353 3 0.01
354 121 0.30
355 11 0.03
364 3 0.01
366 5 0.01
367 158 0.39
368 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (354 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CGGCCGGAAAGGCATAATGCGCAAGCCGGGGACCAGCTCGATTCACCTCTACGTGCTGTCGATCC
CGCTGCCGGTCCCGCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACAAAACGAGCATCCAGGCGCTCAACCGACCAGAGAGGTAGAATGCACAA
GCCGAGGATCAGCCCGGTCCCCCTGCGTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCC
GATCTTAGACTGGGAATGAACTCCATATG
Found at i:31041292 original size:135 final size:135
Alignment explanation
Indices: 31041050--31041295 Score: 341
Period size: 135 Copynumber: 1.8 Consensus size: 135
31041040 GACCGACTCG
* * * * * *
31041050 ATCCCCGTCTACGTGCTGTCGATCCTGTTACCACAACCCTCAGTCCGGGTCGATCTTAGACTAGG
1 ATCCCCCTCTACGTGCTGTCGATCCCGTCACCACAACCCTCAGTCCAGCTCGAGCTTAGACTAGG
*
31041115 AATGAAATCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAGCTGGAGAG
66 AATGAAATCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAGCTGGAGAG
31041180 GCATA
131 GCATA
* * * * *
31041185 ATCCCCCTCTACGTGCTGTCGGTCCCGTCACCACAATCCTCGGTCCAGCTGGGGCTTAGAC-ATG
1 ATCCCCCTCTACGTGCTGTCGATCCCGTCACCACAACCCTCAGTCCAGCTCGAGCTTAGACTA-G
* * *
31041249 GAATGAATTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGG
65 GAATGAAATCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGG
31041296 CACTCAACCA
Statistics
Matches: 95, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
134 1 0.01
135 94 0.99
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (135 bp):
ATCCCCCTCTACGTGCTGTCGATCCCGTCACCACAACCCTCAGTCCAGCTCGAGCTTAGACTAGG
AATGAAATCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAGCTGGAGAG
GCATA
Found at i:31041670 original size:490 final size:490
Alignment explanation
Indices: 31040742--31041676 Score: 1245
Period size: 490 Copynumber: 1.9 Consensus size: 490
31040732 CTTCAGTCTG
**
31040742 GCTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCACAAAACGAGCATCCGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATCCGGGC
* * * ** *
31040807 GCTCAACCGGCTGGAGAGGTAGAATGCGTAAGCCGAGGATCAGTTCGGTACCCCCTGCGTGCTAC
66 ACTCAACCGGCTGGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGATACCCCCTGCGTGCTAC
* * * * *
31040872 CAATCCTGCTACTGGTCCTGCTATCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAC
131 CAATCCTGCTACTGGTCCTACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAAC
* * * * **
31040937 TCCGTATGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAACGTACGTGTGGG
196 TCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGG
* * *
31041002 TACTCAACCGGCCGGAGAGGCCAAATGTGCAAGTCGGGGACCGACTCGATCCCCGTCTACGTGCT
261 TACTCAACCGGCCGGAGAGGCCAAATGCGCAAGTCGGGGACCGACCCGATCCCCCTCTACGTGCT
* * *
31041067 GTCGATCCTGTTACCACAACCCTCAGTCCGGGTCGATCTTAGACTAGGAATGAAATCCGTATGCC
326 GTCGATCCTGCTACCACAACCCTCAGTCCGGATCGATCTTAGACTAGGAATGAAATCCGTATACC
**
31041132 TAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAGCTGGAGAGGCATAATCCCCCTCTAC
391 TAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCAGCTGGAGAGGCATAATCCCCCTCTAC
31041197 GTGCTGTCGGTCCCGTCACCACAATCCTCGGTCCA
456 GTGCTGTCGGTCCCGTCACCACAATCCTCGGTCCA
* * * * *
31041232 GCTGGGGCTTAGACATGGAATGAATTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATCCGGGC
* * *
31041297 ACTCAACCAG-TCGGAGAGGTAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCTCCTGCGTGCT
66 ACTCAACCGGCT-GGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGATACCC-CCTGCGTGCT
* * * *
31041361 ACCGATCCTGCTGCTGGTCCTACTGCCGCAACCCTCGGTCCGATGCAATCTTAGACTGGGAATGA
129 ACCAATCCTGCTACTGGTCCTACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGA
* * *
31041426 ACTCCGTATGCTTAGACATGAAATTAGCTCCGTATGCCTAAGCCAACCCATGAAAC-AAGCGTAC
194 ACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA-CGTAC
* ** * *
31041490 GGGTGCTCAGTCGGTCGGAGAGG-CAGAATGCGCAAGTCGGGGACCGACCCGGTCCCCCT-TACG
258 GGGTACTCAACCGGCCGGAGAGGCCA-AATGCGCAAGTCGGGGACCGACCCGATCCCCCTCTACG
* * * * * *
31041553 TGCTGTTGATCCTGCTGCCACAACCCTCGGT-CTGATCCGATCTTAGACTAGGAATGAACTTCGT
322 TGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGAT-CGATCTTAGACTAGGAATGAAATCCGT
** * *
31041617 ATACCTAAGTCAACCCATGAAACGAGTG-GACGGGCACTGAGCC-GGTCGGAGAGGCATAAT
386 ATACCTAAGTCAACCCACAAAACGAGCGTG-CGGGCACTGAGCCAGCT-GGAGAGGCATAAT
31041677 GCACAAGTCG
Statistics
Matches: 381, Mismatches: 57, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
489 7 0.02
490 207 0.54
491 167 0.44
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (490 bp):
GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATCCGGGC
ACTCAACCGGCTGGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGATACCCCCTGCGTGCTAC
CAATCCTGCTACTGGTCCTACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGG
TACTCAACCGGCCGGAGAGGCCAAATGCGCAAGTCGGGGACCGACCCGATCCCCCTCTACGTGCT
GTCGATCCTGCTACCACAACCCTCAGTCCGGATCGATCTTAGACTAGGAATGAAATCCGTATACC
TAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCAGCTGGAGAGGCATAATCCCCCTCTAC
GTGCTGTCGGTCCCGTCACCACAATCCTCGGTCCA
Found at i:31041779 original size:159 final size:158
Alignment explanation
Indices: 31041435--31041846 Score: 447
Period size: 159 Copynumber: 2.6 Consensus size: 158
31041425 AACTCCGTAT
* * * * * * * **
31041435 GCTTAGACATGAAATTAGCTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGTGGACGGGCACTCAG
* * * * * *
31041500 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGTCCCCCTTACGTGCTGTTGATCC
66 TCGGTCGGAGAGGCAGAATGCACAAGTCGGCGACCGACCCGATCCCCCCTACGTGCTGTAGAGCC
* *
31041565 TGCTGCCACAACCCTCGGTCTGATCCGA
131 CGCTGCCACAACCCTCGGTCCGATCCGA
* * * *
31041593 TCTTAGAC-TAGGAATGAACTTCGTATACCTAAGTCAACCCATGAAACGAGTGGACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGTGGACGGGCACTCA
* * ** * *
31041657 GCCGGTCGGAGAGGCATAATGCACAAGTCGGCGATTGGCTCGATCCCTCCCTACGTGCTGTAG-G
65 GTCGGTCGGAGAGGCAGAATGCACAAGTCGGCGACCGACCCGATCCC-CCCTACGTGCTGTAGAG
* *
31041721 CCACGCTGCCACAACCCTCGGTCCGA-CTGGG
129 CC-CGCTGCCACAACCCTCGGTCCGATC-CGA
* *
31041752 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCATGAAACG-GTCGTG-CGGGCACTC
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGT-G-GACGGGCACTC
*
31041815 AGTCGGCCGGAGAGGCAGAATGCACAAGTCGG
64 AGTCGGTCGGAGAGGCAGAATGCACAAGTCGG
31041847 GGATCGGTCC
Statistics
Matches: 209, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 92 0.44
159 114 0.55
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGTGGACGGGCACTCAG
TCGGTCGGAGAGGCAGAATGCACAAGTCGGCGACCGACCCGATCCCCCCTACGTGCTGTAGAGCC
CGCTGCCACAACCCTCGGTCCGATCCGA
Found at i:31041952 original size:26 final size:26
Alignment explanation
Indices: 31041911--31041963 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31041901 CCAGTCTGAT
*
31041911 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
* *
31041937 CTTAGACCAGGGATGAACTTCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
31041963 C
1 C
31041964 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:31042673 original size:26 final size:26
Alignment explanation
Indices: 31042635--31042687 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31042625 GGCTCAAACT
31042635 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
31042661 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
31042687 C
1 C
31042688 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31043004 original size:158 final size:159
Alignment explanation
Indices: 31042660--31043004 Score: 374
Period size: 159 Copynumber: 2.2 Consensus size: 159
31042650 AACTCCGTAT
*
31042660 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGACGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGTACAGACGCTCAG
* * * * ** * *
31042725 CCGGCCAGAGAGGCAGAATGCGCATGCCGAGGATTGGCTCGGTCTGCCTCTACGTGCTATCGATC
66 CAGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCAATCTCCCCCTACGTGCTATCGATC
* * *
31042790 CTGCTACCACAACCCTCGGTCTGGCTGGG
131 CTGCTACCACAACCCTCGGTCCGGCTCGA
** * * * * ** *
31042819 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGTGGTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGTACAGACGCTCAG
* * *
31042884 CAGGCCGGAGAGGTAGATTGCGCAAGCC-AGGGATCGACTCAATC-CCCCCTACGTGCTA-CAGA
66 CAGGCCAGAGAGGCAGAATGCGCAAGCCGA-GGATCGACTCAATCTCCCCCTACGTGCTATC-GA
* * * *
31042946 TCCTGCTACCGCAACCTTTGGTCCGGTTCGA
129 TCCTGCTACCACAACCCTCGGTCCGGCTCGA
*
31042977 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
31043005 TTAGATTGGG
Statistics
Matches: 152, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 62 0.41
159 88 0.58
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGTACAGACGCTCAG
CAGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCAATCTCCCCCTACGTGCTATCGATC
CTGCTACCACAACCCTCGGTCCGGCTCGA
Found at i:31044013 original size:158 final size:158
Alignment explanation
Indices: 31043721--31044082 Score: 412
Period size: 158 Copynumber: 2.3 Consensus size: 158
31043711 ACTCCATATG
* *
31043721 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAAACCACAAAACAAGCGTGCGGGCACTCAAC
* *
31043786 CGATCGGAGAGGTAGAATGCACAAGCCGAGATCCGACCCGATCCCCCCTGCGTGCTGTCAATCCT
66 CGATCGGAGAGGCAGAATGCACAAGCCGAGATCCGACCCGATCCCCCCTGCGTGCTGTCAATCCG
**
31043851 GCTGCCGTAACCCTCGGTCTGGACCGAT
131 GCTGCCACAACCCTCGGTCTGGACCGAT
* * *
31043879 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTGC-GGCGCT-AA
1 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAAACCACAAAACAAGCGTGCGGGCACTCAA
* * * * * * **
31043941 GTCGATCGGAGAGGCATAATGCGCAAGCCAGGGAT-CGGCCCGATCCTCCTCTGCGTGCTGTCGG
65 -CCGATCGGAGAGGCAGAATGCACAAGCC-GAGATCCGACCCGATCC-CCCCTGCGTGCTGTCAA
* * **
31044005 TCCGGCTGCCACAACCCTCGGTC-CGACTGGGG
127 TCCGGCTGCCACAACCCTCGGTCTGGAC-CGAT
* * *
31044037 CTTAGACATGGAATGAACTTCC-TATGCTTAAGCCAACCCACAAAAC
1 CTTAGACATGGAATAAAC-TCCGTATGCCTAAGCCAAACCACAAAAC
31044083 GGGCATGCAA
Statistics
Matches: 173, Mismatches: 24, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
156 2 0.01
157 43 0.25
158 124 0.72
159 4 0.02
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAAACCACAAAACAAGCGTGCGGGCACTCAAC
CGATCGGAGAGGCAGAATGCACAAGCCGAGATCCGACCCGATCCCCCCTGCGTGCTGTCAATCCG
GCTGCCACAACCCTCGGTCTGGACCGAT
Found at i:31044947 original size:26 final size:26
Alignment explanation
Indices: 31044918--31044970 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31044908 GACTCAAACT
*
31044918 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
31044944 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31044970 C
1 C
31044971 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31045297 original size:26 final size:26
Alignment explanation
Indices: 31045261--31045313 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31045251 CCAATTTGAT
* *
31045261 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
31045287 CTTAGATTAGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
31045313 C
1 C
31045314 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:31045508 original size:26 final size:26
Alignment explanation
Indices: 31045470--31045522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31045460 TCGATCCAAT
*
31045470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
31045496 CTTAGAC-GTGGAATGAACTCCCTATG
1 CTTAGACTG-GGAATGAACTCCCTATG
31045522 C
1 C
31045523 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:31045695 original size:26 final size:26
Alignment explanation
Indices: 31045654--31045706 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31045644 CCGATTTGAT
* *
31045654 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31045680 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31045706 C
1 C
31045707 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31045804 original size:197 final size:202
Alignment explanation
Indices: 31045257--31045953 Score: 580
Period size: 209 Copynumber: 3.5 Consensus size: 202
31045247 CGATCCAATT
* * * * * * * *
31045257 TGATCTTAGACTAGGAATGAACTTCGTATGCTTAGA-TTAGGGATAAACTCCGTATGCCTAAGTC
1 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCC
* * * * * *
31045321 AACCCATGAAACGAGCCTGCAGGCGCTCAGCCGATCGGAGAGGCC-GATCAAAGAGGTAGAATGC
65 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGGGGCCAG-TCAAAGAGGTAGAATAC
** *
31045385 ACAAATC-AGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACTGGTCCTACTGCCA
129 ACAAGCCGA-GGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTAC--GT-C--CTG-C-
* * *
31045449 TAACCCT-CGGTTCGATC
186 -AACCGTCCAGTCCGATC
** * * *
31045466 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCA
1 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
* * * ** *
31045531 ACCCATGAAACG-G-G--CGTGCG---A-CCG-T--TA--AACCAG-CGAAAGAGGTAGAATACG
66 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGGGGCCAGTC-AAAGAGGTAGAATACA
** *
31045582 CAAGCCGAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGC-A-GT-C-GCAACCGT-CA
130 CAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACGTCCTGCAACCGTCCA
*
31045642 GTCCGATT
195 GTCCGATC
* * * *
31045650 TGATCTTAGACTT-GGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGT
1 TGATCTTAGA-TTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGC
* *
31045713 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGGGGCCAGTCAAAGAGGTAGAATGC
64 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGGGGCCAGTCAAAGAGGTAGAATAC
* * *
31045778 ACAAGCCGGGGATCAGCCCGATCCCCCCTATGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGT
129 ACAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTAC--GTCCTGCAACCGT
* *
31045843 AACCCCCGGTCTGATC
192 -----CCAGTCCGATC
*
31045859 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCA
1 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
* * *
31045924 ACCCATGAAACGAGTGTACGGGCGTTCAGC
66 ACCCACGAAACGAGCGTACGGGCGCTCAGC
31045954 GGACCAAAGA
Statistics
Matches: 397, Mismatches: 57, Indels: 68
0.76 0.11 0.13
Matches are distributed among these distances:
183 1 0.00
184 77 0.19
185 2 0.01
186 2 0.01
187 1 0.00
188 6 0.02
191 1 0.00
192 5 0.01
193 1 0.00
195 3 0.01
196 56 0.14
197 61 0.15
198 3 0.01
200 1 0.00
201 5 0.01
202 2 0.01
203 7 0.02
205 4 0.01
208 3 0.01
209 154 0.39
210 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (202 bp):
TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
ACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGGGGCCAGTCAAAGAGGTAGAATACAC
AAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACGTCCTGCAACCGTCCAG
TCCGATC
Found at i:31045965 original size:393 final size:392
Alignment explanation
Indices: 31045103--31046074 Score: 1313
Period size: 393 Copynumber: 2.5 Consensus size: 392
31045093 TCAGCTGGGC
*
31045103 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCGTGCGACCGTTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGTTCAG-
* * * * *
31045168 CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCATGCTATCAATCCT
65 CGACCAAAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
* * * *
31045233 GCTGCCGCAACCCTC-GATCCAATTTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGATTAG
130 GCAGTCGCAACCCTCAG-TCCGATTTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTAG
*
31045297 GGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCCTGCAGGCGCTCAGCCGATCGGAGA
194 GGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCGCTCAGCCGATCGGAGA
* *
31045362 GGCCGATCAAAGAGGTAGAATGCACAAATCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
259 GGCCGATCAAAGAGGTAGAATGCACAAACCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGAT
* *
31045427 CCTGCTACTGGTCCTACTGCCATAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCG
324 CCTGCTACTGGTCCTACTACCATAACCCCCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCG
31045492 TATG
389 TATG
* * *
31045496 CTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGTTAAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGTTCAGC
* * * * * *
31045561 CAGCGAAAGAGGTAGAATACGCAAGCCGAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 GA-CCAAAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
* * *
31045626 GCAGTCGCAACCGTCAGTCCGATTTGATCTTAGACTTGGAATGAACTTCGTATGCTTAGACTGGG
130 GCAGTCGCAACCCTCAGTCCGATTTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTAGG
* * * *
31045691 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGGG
195 GATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCGCTCAGCCGATCGGAGAG
* * *
31045756 GCC-AGTCAAAGAGGTAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTATGTGCTGTCGAT
260 GCCGA-TCAAAGAGGTAGAATGCACAAACCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGAT
* * ** *
31045820 CCTGCTACTGGTCCTGCTACCGTAACCCCCGG-TCTGATCTGATCTTAGATTGGGAATGAACTCC
324 CCTGCTACTGGTCCTACTACCATAACCCCCGGTTC-GATCCAATCTTAGACTGGGAATGAACTCC
31045884 GTATG
388 GTATG
* * * * * **
31045889 CTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGTTCAGC
* ** *
31045954 GGACCAAAGAGGTAGAATGCTCAAGCCGGGGACCGACCCGGTCCCCCCCTGCGTGCTATCGATCC
66 -GACCAAAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGGT-CCCCCCTGCGTGCTATCGATCC
* * * * *** * *
31046019 TGCTA-TCACAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
129 TGC-AGTCGCAACCCTCAGTCCGATTTGATCTTAGACTAGGAATGAACTTCGTATGC
31046075 CTAAGTCAAC
Statistics
Matches: 503, Mismatches: 69, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
392 5 0.01
393 430 0.85
394 67 0.13
395 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (392 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGACCGTTCAGC
GACCAAAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTG
CAGTCGCAACCCTCAGTCCGATTTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTAGGG
ATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCGCTCAGCCGATCGGAGAGG
CCGATCAAAGAGGTAGAATGCACAAACCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
TGCTACTGGTCCTACTACCATAACCCCCGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTA
TG
Found at i:31046319 original size:159 final size:158
Alignment explanation
Indices: 31046057--31046357 Score: 345
Period size: 159 Copynumber: 1.9 Consensus size: 158
31046047 TCTTAGACTG
* * * * * *
31046057 GGAATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGTTCGGGAGCTGAGCCGATCGGAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGACCGGAA
* * * * *
31046122 AGGCATAATGCGTAAGTCGAGGGTCGGCCCGATCCCCCTCTGCGTGCTATCGATCCCACTGCCAC
66 AGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCT-TGCGTGCTACCGATCCCACTGCCAC
*
31046187 AACCCTCGGTCCGACTGGGGCTTAGATAT
130 AACCCTAGGTCCGACTGGGGCTTAGATAT
* * *
31046216 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAGCC-AGCCGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGA-CCGGA
* * * * * *** *
31046280 GAGGCAGAATGCGTAAGCCG-GAGATCAGCCTGGTTCCCCTTGTGTGCTACCGATCTTGCTGTCA
65 AAGGCAGAATGCGTAAGCCGAG-GATCAGCCCGATCCCCCTTGCGTGCTACCGATCCCACTGCCA
31046344 CAACCCTAGGTCCG
129 CAACCCTAGGTCCG
31046358 GTCTGATCTT
Statistics
Matches: 116, Mismatches: 24, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
158 33 0.28
159 83 0.72
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGACCGGAA
AGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTTGCGTGCTACCGATCCCACTGCCACA
ACCCTAGGTCCGACTGGGGCTTAGATAT
Found at i:31046414 original size:25 final size:26
Alignment explanation
Indices: 31046365--31046420 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
31046355 CCGGTCTGAT
31046365 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
* *
31046391 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
31046416 CTTAA
1 CTTAA
31046421 GTCAACCCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:31046871 original size:354 final size:353
Alignment explanation
Indices: 31046180--31046881 Score: 775
Period size: 354 Copynumber: 2.0 Consensus size: 353
31046170 ATCGATCCCA
* *
31046180 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** *
31046245 CATGAAACGGGTGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCCGGAGATCAGCC
66 AATGAAACAAGTGTACGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCCGGAGATCAGCC
* * ** * * ** * * *
31046310 TGGTTCCCCTTGTGTGCTACCGATCTTGCTGTCACAACCCTAGGTCCGGTCTGATCTTAAACTGG
131 TGGTCCCCCCTGCATGCTACCGATCCTACTACCACAACCCTAGGTCCAGTCCGATCATAAACTGG
* ** * *
31046375 GAATAAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCTTAAGTCAACCCACAAAATGAAC
196 GAATAAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAAC
* * ** * * * **
31046440 ATGCGGGCGCTTAGCCAGCCAAAGAGGCATAATGCGTAAGTCGAGGATCATCCCGGTCCCCCTGT
261 ATGCGGGCGCTCAGCCAGCCAAAGAGGCAGAATGCACAAGTCGAGGACCAGCCCGATCCCCCTAC
31046505 GTGTGCTGTCGAT-CTCGCTGCCGGTCCTG
326 GTGT-CTGTCGATCCT-GCTGCCGGTCCTG
* *
31046534 CTGCCACAACCCTCGGTCC-AGCTGGGGCATAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGA-CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
31046598 CAATGAAACAAGTGTACGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGTC-GAGGATCAG
65 CAATGAAACAAGTGTACGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCCGGA-GATCAG
* * ** * *
31046662 TC-GGTCCCTCCCTGCATGCTACCGATCCTATTACCGTAACCCTCGGTCCAGTCCGATCATAGAC
129 CCTGGTCCC-CCCTGCATGCTACCGATCCTACTACCACAACCCTAGGTCCAGTCCGATCATAAAC
* ** **
31046726 TGGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAAC
193 TGGGAATAAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAAC
** * * * * * ** * *
31046791 GTGCGTGTGGGTGCTCAGCCGGTCGGAGAGGCAGAATGTACAAGTCGGGGACCAGCCCGATCCCC
257 GAACATGCGGGCGCTCAGCCAGCCAAAGAGGCAGAATGCACAAGTCGAGGACCAGCCCGAT-CCC
31046856 CCTACGTGT-TGTCGATCCTGCTGCCG
321 CCTACGTGTCTGTCGATCCTGCTGCCG
31046882 CAACCCTCAA
Statistics
Matches: 283, Mismatches: 59, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
353 8 0.03
354 189 0.67
355 76 0.27
356 10 0.04
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (353 bp):
CTGCCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
AATGAAACAAGTGTACGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGTAAGCCGGAGATCAGCC
TGGTCCCCCCTGCATGCTACCGATCCTACTACCACAACCCTAGGTCCAGTCCGATCATAAACTGG
GAATAAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAAC
ATGCGGGCGCTCAGCCAGCCAAAGAGGCAGAATGCACAAGTCGAGGACCAGCCCGATCCCCCTAC
GTGTCTGTCGATCCTGCTGCCGGTCCTG
Found at i:31046874 original size:184 final size:184
Alignment explanation
Indices: 31046563--31046929 Score: 421
Period size: 184 Copynumber: 2.0 Consensus size: 184
31046553 AGCTGGGGCA
* * * *
31046563 TAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAACAAGTGTACGGGTGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCAAAGCCAACCAATGAAACAAGCGTACGGGTGCTCAGCCG
** * * * * *
31046628 GTCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGTCGGTCCCTCCCTGCATGCTACCGATCCTAT
66 GTCGGAGAGGCAGAATGCACAAGTCGAGGACCAGCCGATCCCTCCCTACATGCTACCGATCCTAC
* ** * *
31046693 TACCGTAACCCTCGGTCCAGTCCGATCATAGACTGGGAATGAACTTTGTATGCT
131 TACCGCAACCCTCAATCCAGTCCGATCATAGACTGGGAATAAACTTCGTATGCT
* ** **
31046747 TAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGTGCGTGTGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCAAAGCCAACCAATGAAACAAGCGTACGGGTGCTCAGCCG
* * * * ** *
31046812 GTCGGAGAGGCAGAATGTACAAGTCGGGGACCAGCCCGATCCC-CCCTACGTGTTGTCGATCCTG
66 GTCGGAGAGGCAGAATGCACAAGTCGAGGACCAG-CCGATCCCTCCCTACATGCTACCGATCCTA
* ** * *
31046876 CTGCCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATAAACTTCGTATGC
130 CTACCGCAACCCTCAATCCAGTCCGATCATAGACTGGGAATAAACTTCGTATGC
31046930 ATAAGTCAAC
Statistics
Matches: 149, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
184 143 0.96
185 6 0.04
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.22
Consensus pattern (184 bp):
TAGACATGGAATGAACTCCGTATGCCAAAGCCAACCAATGAAACAAGCGTACGGGTGCTCAGCCG
GTCGGAGAGGCAGAATGCACAAGTCGAGGACCAGCCGATCCCTCCCTACATGCTACCGATCCTAC
TACCGCAACCCTCAATCCAGTCCGATCATAGACTGGGAATAAACTTCGTATGCT
Found at i:31047577 original size:156 final size:156
Alignment explanation
Indices: 31047361--31047875 Score: 475
Period size: 156 Copynumber: 3.3 Consensus size: 156
31047351 ATCGCAACTG
* * *
31047361 TCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGC
1 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* * *
31047426 GTGCAGGCACTCAGTAGGCCGGAGAGGCAGAATGCGTAAGTCAGGGATCGGCTCGATCCCCCCTG
66 GTGCGGGCGCTCAGTAGGCCGGAGAGGCAGAATGCGCAAGTC-GGGATCGGCTCGATCCCCCCTG
* *
31047491 CATGCTATCAATC-ATGTGTCACAACTC
130 CATGCTGTCAATCTA-GTGTCACAACCC
* * * **
31047518 TCGGTCCGGTCCGATCTTAGA-TTGGAATGAACTACGTATGCCTAAGTAAACCCACGAAACGAGC
1 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* * * * * * * * *
31047582 GTGCGGGCGCTGAGCCA-GTCGAAAAGGCATAATGCGCAAGTCGAGAATCGACTCGATCCCCTTC
66 GTGCGGGCGCTCAG-TAGGCCGGAGAGGCAGAATGCGCAAGTCG-GGATCGGCTCGATCCCC-CC
** * * * *
31047646 TGCGGGCTGCCAGTCTCGCTGCCACAACCC
128 TGCATGCTGTCAATCTAG-TGTCACAACCC
* * ** * * *
31047676 TCGGTCC-GGCTGGGGCTTAGACAT-GGAATGAACCCCCTATGCCTAAGCCAACCCACAAAACTG
1 TCGGTCCAGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-G
* * * * *
31047739 -GCATGCGGGCGCTCAATCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCC
63 AGCGTGCGGGCGCTCAGTAGGCCGGAGAGGCAGAATGCGCAAGTC-GGGATCGGCTCGATCCCCC
* * *
31047803 CTGCATGCTGTCGATCCTACTGTCGCAACCC
127 CTGCATGCTGTCAAT-CTAGTGTCACAACCC
* * *
31047834 TCGGTTCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGC
1 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
31047876 TTAGATTGGG
Statistics
Matches: 274, Mismatches: 70, Indels: 27
0.74 0.19 0.07
Matches are distributed among these distances:
155 1 0.00
156 83 0.30
157 35 0.13
158 71 0.26
159 81 0.30
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
GTGCGGGCGCTCAGTAGGCCGGAGAGGCAGAATGCGCAAGTCGGGATCGGCTCGATCCCCCCTGC
ATGCTGTCAATCTAGTGTCACAACCC
Found at i:31047885 original size:26 final size:26
Alignment explanation
Indices: 31047849--31047901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31047839 TCAGTTCGAT
31047849 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
31047875 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31047901 C
1 C
31047902 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31048929 original size:159 final size:158
Alignment explanation
Indices: 31048672--31049007 Score: 347
Period size: 159 Copynumber: 2.1 Consensus size: 158
31048662 CCCGTTCGAT
* * * * *
31048672 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACACTCAGC
* * * * *
31048737 CGATCGGAGAGGCATAATGCGAAAACTGAGGATC-AGCCCAATCCCCCTCTGTGTGCTGCCTG-T
66 CGACCGGAGAGGCAGAATGCGAAAACCGAGGATCGA-CCCAATCCCCC-CTGCGTGCT-ACTGAT
*
31048800 CCCGTTGCCACAACCCTCGGTCCGGCTGGGG
128 CCCGCTGCCACAACCCTCGGTCCGGCTGGGG
* * * **
31048831 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTGCGGATGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACACTCAG
* * * **
31048895 CCGACCGGAGAGGTAGAATGC-ACAAGCCGGGGATCGACCCTGTCCCCCCTGCGTGCTACTGATC
65 CCGACCGGAGAGGCAGAATGCGA-AAACCGAGGATCGACCCAATCCCCCCTGCGTGCTACTGATC
* * ** **
31048959 CTGCTGCCACAACCCTCGGTCCAGCCCGAT
129 CCGCTGCCACAACCCTCGGTCCGGCTGGGG
*
31048989 CTTAGACTAGGAATGAACT
1 CTTAGACTGGGAATGAACT
31049008 ACGTATGCTT
Statistics
Matches: 145, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.03
158 51 0.35
159 88 0.61
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACACTCAGC
CGACCGGAGAGGCAGAATGCGAAAACCGAGGATCGACCCAATCCCCCCTGCGTGCTACTGATCCC
GCTGCCACAACCCTCGGTCCGGCTGGGG
Found at i:31049756 original size:26 final size:26
Alignment explanation
Indices: 31049714--31049766 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31049704 GTCTCAAAAT
* *
31049714 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31049740 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31049766 C
1 C
31049767 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31050083 original size:26 final size:26
Alignment explanation
Indices: 31050032--31050084 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31050022 TTGGTCCGAT
*
31050032 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
31050058 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATCAACTCCATATG
31050084 C
1 C
31050085 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:31050437 original size:26 final size:26
Alignment explanation
Indices: 31050408--31050460 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31050398 CCAGTCCGAT
31050408 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
31050434 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
31050460 C
1 C
31050461 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:31050907 original size:26 final size:26
Alignment explanation
Indices: 31050878--31050930 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31050868 CCGGTCCGAT
*
31050878 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
*
31050904 CTTAGACTAGGGACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
31050930 C
1 C
31050931 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:31051295 original size:26 final size:26
Alignment explanation
Indices: 31051257--31051309 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31051247 CCGGTCCGAT
31051257 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31051283 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
31051309 C
1 C
31051310 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31051787 original size:26 final size:26
Alignment explanation
Indices: 31051751--31051803 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31051741 CCGGTCTGAT
31051751 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
31051777 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
31051803 C
1 C
31051804 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:31052844 original size:159 final size:158
Alignment explanation
Indices: 31052488--31052845 Score: 409
Period size: 158 Copynumber: 2.3 Consensus size: 158
31052478 AACTCCGTAT
** * * * *
31052488 GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGTGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTCCGGGAGCTGAG
* *
31052553 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGTGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCC
* *
31052618 TGCTGCCACAACCCTCCATCCGGTCCGA
131 CGCTGCCACAACCCTCCACCCGGTCCGA
* * * *
31052646 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTCCGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTCCGGGAGCTGA
* ** ** * * *
31052710 GCTGGTCGGAGAGTTATAATGCGCAAGCCGGGGATC-GACCCGGTCCCCCTCTGCGTGCTGCCGG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCC-CTGCGTGCTGCCGA
* *
31052774 TCCCGCTGCCACAACCCT-CAGCCCGG-CAGGG
128 TCCCGCTGCCACAACCCTCCA-CCCGGTC-CGA
* *
31052805 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
31052846 TAAAATGGGC
Statistics
Matches: 165, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
157 2 0.01
158 95 0.58
159 67 0.41
160 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTCCGGGAGCTGAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCC
CGCTGCCACAACCCTCCACCCGGTCCGA
Found at i:31052876 original size:159 final size:157
Alignment explanation
Indices: 31052488--31052926 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 157
31052478 AACTCCGTAT
** * *
31052488 GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGTGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAAGAGCGTGCGGGTGCTCAG
** * * *
31052553 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCCCCTGTGTGCTGTCGATC
65 CCGGTCGGAGAGCCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCGTGCTGCCGATC
* *
31052617 CTGCTGCCACAACCCTCCATCCGGTCCGA
129 CCGCTGCCACAACCCTCCACCCGGTCCGA
* * * * * * *
31052646 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTCCGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAAGAGCGTGCGGGTGCTCA
* ** * * *
31052710 GCTGGTCGGAGAGTTATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGT
64 GCCGGTCGGAGAGCCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGAT
* *
31052775 CCCGCTGCCACAACCCT-CAGCCCGG-CAGGG
128 CCCGCTGCCACAACCCTCCA-CCCGGTC-CGA
* * * * *
31052805 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTGCGGGTGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-GAGCGTGCGGGTGCTCAG
* * * * * *
31052870 CGGGTCGAAGAGCCAGAATGCGTAAGCTGGGGATCGACTCGATCCCCCCTGCATGCT
65 CCGGTCGGAGAGCCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCT
31052927 ATCGATCTTA
Statistics
Matches: 228, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 106 0.46
159 120 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGAGCGTGCGGGTGCTCAGC
CGGTCGGAGAGCCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCC
GCTGCCACAACCCTCCACCCGGTCCGA
Found at i:31052993 original size:26 final size:26
Alignment explanation
Indices: 31052964--31053042 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
31052954 CCGGTCTGAT
*
31052964 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
*
31052990 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
*
31053016 CTTAGACTGGGGATGAACACTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
31053042 C
1 C
31053043 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:31053700 original size:159 final size:158
Alignment explanation
Indices: 31053398--31053900 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 158
31053388 ACTCCGTATG
*
31053398 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAA-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCT-AAG
* * * * * * **
31053462 CCGGTCGGAGAGGCAGAATGTGCAAGTCGAGGATTGGCCCAGTCCCCCCCTGCGTGCTGTCGATC
65 CCGGTCGGAGAGGCAAAATGCGAAAGTCGGGGATCGACCCAGT-CCCCCCTGCGTGCTACCGATC
** ** * *
31053527 CTGCTATCGTAACCCTCGGTTCGGTCTGAT
129 CTGCTGCCCCAACCCTCGGTCCGATCTGAT
* ** * *
31053557 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCTAAG
* * * * * *
31053621 CTGATCGAAGAGGCATAATGCGAAAGTCGGGGATCGACCAAGTCCCCCTCTGCGTGCTACCGGTC
65 CCGGTCGGAGAGGCAAAATGCGAAAGTCGGGGATCGACCCAGTCCCCC-CTGCGTGCTACCGATC
* * **
31053686 CCGCTGCCCCAACCCTTGGTCCGAT-TGGGG
129 CTGCTGCCCCAACCCTCGGTCCGATCT-GAT
* * * * ** * *
31053716 GTTAGACATGGAAGGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCGTATGGGTGCCAAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCTAAGC
* * *
31053781 CGGCCGGAGAGGCAAAATGC-ACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCC
66 CGGTCGGAGAGGCAAAATGCGA-AAGTCGGGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
* * * *
31053845 TGCTGTCGCC-ATCCTCGGTCCAATCCGAT
130 TGCTG-CCCCAACCCTCGGTCCGATCTGAT
31053874 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
31053901 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 63, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 62 0.23
159 208 0.76
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCTAAGC
CGGTCGGAGAGGCAAAATGCGAAAGTCGGGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCCT
GCTGCCCCAACCCTCGGTCCGATCTGAT
Found at i:31053903 original size:26 final size:26
Alignment explanation
Indices: 31053874--31053926 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31053864 CCAATCCGAT
31053874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31053900 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31053926 C
1 C
31053927 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31054186 original size:342 final size:342
Alignment explanation
Indices: 31053557--31054272 Score: 895
Period size: 342 Copynumber: 2.1 Consensus size: 342
31053547 TCGGTCTGAT
* *
31053557 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATACGGGCGCTGAGC
*
31053622 TGATCGAAGAGGCATAATGCGAAAGTCGGGGATCGACCAAGTCCCCCTCTGCGTGCTACCGGTCC
66 TGATCGAAGAGGCATAATGCGAAAGTCGGGGATCGACCAAGTCCCCCTCTGCGTGCTACCAGTCC
* * * * *
31053687 CGCTGCCCCAACCCTTGGTCCGATTGGGGGTTAGACATGGAAGGAACTCCCTACGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAAGGAACTCCCTACGCCTAAGCCAA
* * * * **
31053752 CCCATGAAACGGGCGTATGGGTGCCAAGCCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGA
196 CCCATGAAACGGGCGTACGGGCGCCAAGCCGGCCGGAGAGGCAAAATGCAAAAACCAAGGATCGA
* *
31053817 CCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCC-A-TCCTCGGTCCAATCCGATCTTAGA
261 CCCGGTCCCCCCTGCGTGCTACCGATCCTG-T-T-GCCAAGCCCTCGGTCCAATCAGATCTTAGA
*
31053880 CTGGGAATGAACTCCGTATG
323 CTAGGAATGAACTCCGTATG
** ** * *
31053900 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTGTGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATACGGGCGCTGAG-
* * * **** * **
31053965 CTG-TCGGAGGGGCATAATGCGCAAGTCGGGGATC-AGTTTGGTCCCTCTCTTTGTGCTACCAGT
65 CTGATCGAAGAGGCATAATGCGAAAGTCGGGGATCGA-CCAAGTCCCCCTCTGCGTGCTACCAGT
* * * *
31054028 CCCGTTG-CACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAAGGAACTCCCTACGCCTAAGCC
* * * *
31054092 AATCCATGAAACGGGCGTGCGGGCGCTC-AGTCGGCCGGAGAGGCAGAATGCAAAAACCAAGGAT
194 AACCCATGAAACGGGCGTACGGGCGC-CAAGCCGGCCGGAGAGGCAAAATGCAAAAACCAAGGAT
* * * **
31054156 CGACCTGGTCCCCCCTGCGTGTTGCCGATCCTGTTGCCAAAGCCCTCGGTCCGGTCAGATCTTAG
258 CGACCCGGTCCCCCCTGCGTGCTACCGATCCTGTTGCC-AAGCCCTCGGTCCAATCAGATCTTAG
* *
31054221 ACTAGGAATTAACTCCTTATG
322 ACTAGGAATGAACTCCGTATG
31054242 CTTAGACTGGGGATGAACTCCGTATGCCTAA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAA
31054273 TGTGTAAGTC
Statistics
Matches: 319, Mismatches: 48, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
339 3 0.01
340 1 0.00
341 2 0.01
342 200 0.63
343 110 0.34
344 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATACGGGCGCTGAGC
TGATCGAAGAGGCATAATGCGAAAGTCGGGGATCGACCAAGTCCCCCTCTGCGTGCTACCAGTCC
CGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAAGGAACTCCCTACGCCTAAGCCAA
CCCATGAAACGGGCGTACGGGCGCCAAGCCGGCCGGAGAGGCAAAATGCAAAAACCAAGGATCGA
CCCGGTCCCCCCTGCGTGCTACCGATCCTGTTGCCAAGCCCTCGGTCCAATCAGATCTTAGACTA
GGAATGAACTCCGTATG
Found at i:31054260 original size:26 final size:26
Alignment explanation
Indices: 31054216--31054268 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31054206 CCGGTCAGAT
* *
31054216 CTTAGACTAGGAATTAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
31054242 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31054268 C
1 C
31054269 CTAATGTGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31055054 original size:26 final size:26
Alignment explanation
Indices: 31055025--31055075 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
31055015 AGTCTGATCA
*
31055025 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
31055051 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
31055076 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:31055395 original size:26 final size:26
Alignment explanation
Indices: 31055366--31055418 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31055356 CTGGTCCGAT
31055366 CTTAGACT-GCGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
*
31055392 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31055418 C
1 C
31055419 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31055773 original size:25 final size:26
Alignment explanation
Indices: 31055745--31055796 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31055735 CCGGTCCGAT
*
31055745 CTTAGAC-TTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
31055770 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31055796 C
1 C
31055797 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31055969 original size:26 final size:26
Alignment explanation
Indices: 31055927--31055979 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31055917 CTGGCCCGAT
31055927 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31055953 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31055979 C
1 C
31055980 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31056128 original size:183 final size:183
Alignment explanation
Indices: 31055754--31056128 Score: 432
Period size: 183 Copynumber: 2.0 Consensus size: 183
31055744 TCTTAGACTT
* * *
31055754 GAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAT
1 GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAG
* * ** *
31055819 CGTGCAGGCACTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGACCGATCGGTCCCCCCTA
66 CGTGCAGGCACTCAGCCGATCGGAGAGCCAGAATGCGCAAGCCAGGGACCGACCGGTCCCCCCTA
* ** * * * *
31055884 CGTGATGTCAATCCTGTTGCTGCAACCGTCGATCTGGCCCGATCTTAGACTGG
131 CGTGATGTCAATCCTGCTGCCACAACCCTCGATCTGGCCCGATCATAGAATAG
* **
31055937 GAATGAACTCCATATGCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCATGAAATGAG
1 GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAG
* * ** * * *
31056002 CGTGCGGGCGCTCAGCCGATCGGAGAGCCAGAATTGC-CAAGCTGGGGATCGGCCTGGTCCCTCC
66 CGTGCAGGCACTCAGCCGATCGGAGAGCCAGAA-TGCGCAAGCCAGGGACCGACC-GGTCCCCCC
* * * * *
31056066 TACGTGCTGTCGATCCTGCTGCCACAACCCTC-AGTCTGGTCTGATCATAGAATAT
129 TACGTGATGTCAATCCTGCTGCCACAACCCTCGA-TCTGGCCCGATCATAGAATAG
31056121 G-ATGAACT
1 GAATGAACT
31056129 ATATATGCCT
Statistics
Matches: 159, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 106 0.67
184 53 0.33
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (183 bp):
GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAG
CGTGCAGGCACTCAGCCGATCGGAGAGCCAGAATGCGCAAGCCAGGGACCGACCGGTCCCCCCTA
CGTGATGTCAATCCTGCTGCCACAACCCTCGATCTGGCCCGATCATAGAATAG
Found at i:31056456 original size:26 final size:26
Alignment explanation
Indices: 31056427--31056479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31056417 CCGGTCTAAT
31056427 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31056453 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31056479 C
1 C
31056480 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31057197 original size:26 final size:26
Alignment explanation
Indices: 31057159--31057211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31057149 GGCTCAAAAT
31057159 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
31057185 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
31057211 C
1 C
31057212 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:31057608 original size:159 final size:159
Alignment explanation
Indices: 31057184--31057611 Score: 427
Period size: 159 Copynumber: 2.7 Consensus size: 159
31057174 AACTCCGCAT
* *
31057184 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGC-TTA
* * * * * *
31057249 -CCGATCGGAGAGGCAAAATGTGCAAGTCGCGGATCGGTCCGGTCCCCCTCTACGTTCTATCGAT
65 GCCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACCGAT
** * *
31057313 CCTGCTACCGTAACCCTCAATTCAGTCCGA
130 CCTGCTACCACAACCCTCAAGTCAGGCCGA
* * * * * * *
31057343 TCTGAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACTAGCGTGCGGGTGC-TA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTTA
* * * * * *
31057406 TGCCGGTCGGAGAGGCATAATGCACAAATCGAGGATTGACCCGGTCCCCCTCTGCGTGCTACC-A
65 -GCCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACCGA
* * * * *
31057470 GTGCC-GCTGCCACAACCCTC-GGTCTGGCTGGG
129 -T-CCTGCTACCACAACCCTCAAGTCAGGC-CGA
* *
31057502 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTTAG
* * * * *
31057567 TCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGGTCC
31057612 TCTTACGTGC
Statistics
Matches: 214, Mismatches: 47, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 6 0.03
159 201 0.94
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTTAG
CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACCGATC
CTGCTACCACAACCCTCAAGTCAGGCCGA
Found at i:31058540 original size:316 final size:315
Alignment explanation
Indices: 31057832--31058656 Score: 850
Period size: 316 Copynumber: 2.6 Consensus size: 315
31057822 CAATCCTGCT
* * * **
31057832 GTCAGTCCTGCTACCACAACCATCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCC
1 GTCAGTCCCGCTACCACAACCATCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
* * * *
31057897 TAAGCCAACCCATGAAATGAGCGTGTGGGAGCTCAGCCGGCCGGAGAGGTAGAATGCATAAGCCG
66 TAAGCCAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCCG
* * * * * *
31057962 AGGATCGTACGGCCCCCCCTGCGTGCTACCGATCCTACTACTGGTCCTACTACCGTATCCCTCTG
131 AGGATCGCACGGTCCCCCCTGCGTGCTATCGA---T-C--CT-G--CT-GT--CGTAACCCTCGG
* * *
31058027 TCTGATCCAATCTTAGACTGGGAATGAACTTCATATGCTAACTCAACAAACGAAACAAGCGTGCG
184 TCTGATCCAATCTAAGACTGGGAATGAACCTCATATGCTAACTCAACAAACGAAACAAGCATGCG
* * * * * * ** ** *
31058092 GGCGCTGAGCCGACTGGAGAGGCATAATGCGCAAGTTGGGGATTGGCCCGGTCCCCCTCTGCATG
249 GGCGCTGAGCCGACTCGAAAAGCATAACGAGCAAGTCGAAGATCAGCCCGATCCCCCTCTGCATG
31058157 CC
314 CC
* * * *
31058159 GTCGGTCTCGCTGCCACAATCCGT-GGT-CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
1 GTCAGTCCCGCTACCACAA-CCATCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * **
31058222 CTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCCAGCCAAAGAGGTAGAATGCGTAAGCC
65 CTAAGCCAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCC
* ** * * * *
31058287 -AGGGATCAGCCCAATCCCCCTTGCATGCTATCGATCCTGCTGTCGTAACCCTCGGTCTGGTCCG
130 GA-GGATC-GCACGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGTAACCCTCGGTCTGATCCA
* * * ** *
31058351 ATCTAAGATTGGGAATGAACCTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGA
193 ATCTAAGACTGGGAATGAACCTCATATG-CTAACTCAACAAACGAAACAAGCATGCGGGCGCTGA
* ** *
31058416 GCCGGC-CGAAAAGCATAACGAGCAAGTCGAAGATCAGCCCGATCCCCCTCTGTGTGCT
257 GCCGACTCGAAAAGCATAACGAGCAAGTCGAAGATCAGCCCGATCCCCCTCTGCATGCC
*
31058474 G-CTAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
1 GTC-AGTCCCGCTACCACAACCATCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * * * *
31058538 CTAAGCCAACCAACGAAATAGGCGTGCGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCC
65 CTAAGCCAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCC
* * * * *
31058603 GAGGATCGGCTCGGTCCCCCCTGTGTGCTGTCGATCCTACTGCCGTAACCCTCG
130 GAGGATC-GCACGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGTAACCCTCG
31058657 ATCCAGTTCG
Statistics
Matches: 412, Mismatches: 78, Indels: 27
0.80 0.15 0.05
Matches are distributed among these distances:
314 4 0.01
315 96 0.23
316 169 0.41
317 2 0.00
318 2 0.00
320 1 0.00
321 2 0.00
323 1 0.00
324 1 0.00
325 1 0.00
326 94 0.23
327 36 0.09
328 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (315 bp):
GTCAGTCCCGCTACCACAACCATCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
TAAGCCAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCCG
AGGATCGCACGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGTAACCCTCGGTCTGATCCAATC
TAAGACTGGGAATGAACCTCATATGCTAACTCAACAAACGAAACAAGCATGCGGGCGCTGAGCCG
ACTCGAAAAGCATAACGAGCAAGTCGAAGATCAGCCCGATCCCCCTCTGCATGCC
Found at i:31058632 original size:158 final size:158
Alignment explanation
Indices: 31058038--31058609 Score: 432
Period size: 158 Copynumber: 3.6 Consensus size: 158
31058028 CTGATCCAAT
* * * * * *
31058038 CTTAGAC-TGGGAATGAACTTCATATG-CTAA-CTCAACAAACGAAACAAGCGTGCGGGCGCTGA
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGC-CAACCAACGAAATAGGCGTGCGGGCGCTCA
* * ** * ** * * *
31058100 GCCGACTGGAGAGGCATAATGCGCAAGTTGGGGATTGGCCCGGTCCCCCTCTGCATGCCGTCGGT
65 GCCGGC-GGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTGT-AGT
* *
31058165 CTCGCTGCCACAATCCGT-GGT-CGGCTGGGG
128 CCCGCTGCCACAA-CCCTCGGTCCGGCTGGGG
* * *
31058195 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATAGGCGTGCGGGCGCTCAG
* ** * * * * *
31058259 CCAGCCAAAGAGGTAGAATGCGTAAGCC-AGGGATCAGCCCAATCCCCCT-TGCATGCTATCGAT
66 CC-GGCGGAGAGGCAGAATGCGCAAGCCGA-GGATCAGCCCGATCCCCCTCTGCATGCTGTAG-T
* * ** * * **
31058322 CCTGCTGTCGTAACCCTCGGTCTGG-TCCGAT
128 CCCGCTGCCACAACCCTCGGTCCGGCT-GGGG
* * * * * * * *
31058353 CTAAGA-TTGGGAATGAAC-CTCGTATGCCTAAGTCAACCCACGAAA-CGAGCATGCGGGCGCTG
1 CTTAGACATGGGAATGAACTC-CCTATGCCTAAGCCAACCAACGAAATAG-GCGTGCGGGCGCTC
* * * * * * * * **
31058415 AGCCGGCCGAAAAGCATAACGAGCAAGTCGAAGATCAGCCCGATCCCCCTCTGTGTGCTGCTAGT
64 AGCCGGCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTG-TAGT
*
31058480 CCCGCTACCACAACCCTCGGTCCGGCTGGGG
128 CCCGCTGCCACAACCCTCGGTCCGGCTGGGG
*
31058511 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATAGGCGTGCGAGCGCTCAG
1 CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATAGGCGTGCGGGCGCTCAG
31058575 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATC
66 CCGG-CGGAGAGGCAGAATGCGCAAGCCGAGGATC
31058610 GGCTCGGTCC
Statistics
Matches: 309, Mismatches: 86, Indels: 38
0.71 0.20 0.09
Matches are distributed among these distances:
156 4 0.01
157 77 0.25
158 197 0.64
159 31 0.10
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATAGGCGTGCGGGCGCTCAG
CCGGCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTGTAGTCCC
GCTGCCACAACCCTCGGTCCGGCTGGGG
Found at i:31058673 original size:158 final size:158
Alignment explanation
Indices: 31058195--31058688 Score: 437
Period size: 158 Copynumber: 3.1 Consensus size: 158
31058185 TCGGCTGGGG
* *
31058195 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 CTTAGACATAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGCGCTCAG
* * * * * * ** *
31058259 CCAGCCAAAGAGGTAGAATGCGTAAGCC-AGGGATCAGCCCAATCCCCCTTGCATGCTATCGATC
66 CC-GGCAGAGAGGCAGAATGCGCAAGCCGA-GGATCAGCCCGATCCCCCCTGTGTGCTGTCGATC
* * *
31058323 CTGCTGTCGTAACCCTCGGTCTGGTCCGAT
129 CTGCTGCCGTAACCCTCGGTCCGGTTCGAT
* * * * * * * *
31058353 CTAAGA-TTGGGAATGAAC-CTCGTATGCCTAAGTCAACCCACGAAA-CGAGCATGCGGGCGCTG
1 CTTAGACATAGGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAATAG-GCGTGCGGGCGCTC
* * * * * * * * *
31058415 AGCCGGCCGAAAAGCATAACGAGCAAGTCGAAGATCAGCCCGATCCCCCTCTGTGTGCTG-CTAG
64 AGCCGGCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCC-CTGTGTGCTGTCGA-
* * ** * * **
31058479 TCCCGCTACCACAACCCTCGGTCCGGCTGGGG
127 TCCTGCTGCCGTAACCCTCGGTCCGGTTCGAT
* *
31058511 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATAGGCGTGCGAGCGCTCAG
1 CTTAGACATAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGCGCTCAG
* * * *
31058575 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGG-CAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGTGTGCTGTCGATCC
* * *
31058640 TACTGCCGTAACCCTCGATCCAGTTCGAT
130 TGCTGCCGTAACCCTCGGTCCGGTTCGAT
31058669 CTTAGAC-TAGGAATGAACTC
1 CTTAGACATAGGAATGAACTC
31058689 TGTAAGCTTA
Statistics
Matches: 255, Mismatches: 69, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 36 0.14
158 182 0.71
159 37 0.15
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGCGCTCAG
CCGGCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGTGTGCTGTCGATCCT
GCTGCCGTAACCCTCGGTCCGGTTCGAT
Found at i:31059577 original size:26 final size:26
Alignment explanation
Indices: 31059541--31059593 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31059531 CCGATCCGAT
31059541 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTGGGGAA-GAACTCCATATG
*
31059567 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCATATG
31059593 C
1 C
31059594 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCATATG
Found at i:31059836 original size:330 final size:330
Alignment explanation
Indices: 31059228--31059839 Score: 937
Period size: 330 Copynumber: 1.9 Consensus size: 330
31059218 TACTAGCACG
* * **
31059228 CTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTGTGG
1 CTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGG
* * * *
31059293 GCGCTCAATCGGCCGGAGAGGCATAATGTGCAAGTCAGGGATCGGCTCGGTCCCCCTCTGCATGC
66 GCGCTCAATCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGGCCCCCCTCTGCATGC
* *
31059358 CATCGATCCTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATG
131 CACCGATCCTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATAGAATG
* * *
31059423 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCGACCTGTCGGAGAGGCAG
196 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGAGCTCGACCGGTCGGAGAGGCAG
31059488 AATGCGCAAGCTGGGGATCGGCCCGACCCGGTCAACCCTCGGTCCGATCCGATCTTAGACTGGGA
261 AATGCGCAAGCTGGGGATCGGCCCGACCCGGTCAACCCTCGGTCCGATCCGATCTTAGACTGGGA
31059553 ATGAA
326 ATGAA
* * *
31059558 CTCCATATGCTTAGAC-TGGGGAA-GAACTCCGTATGCCTAAGTCAACGCACGAAATGAGCGTAC
1 CTCCATATGCTTAGACAT--GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC
* * *
31059621 GGGTGCTCAGTCGGCCGGAGAGGCATAATGCGCAAG-CTGAGGATCAGCCCGGCCCCCCTCTGCA
64 GGGCGCTCAATCGGCCGGAGAGGCATAATGCGCAAGTCAG-GGATCAGCCCGGCCCCCCTCTGCA
*
31059685 TGCTACCGATCAC-GCTGCCAGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATAG
128 TGCCACCGATC-CTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATAG
* * *
31059749 AATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGAGCTCGATCGGTCGGAGTG
192 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGAGCTCGACCGGTCGGAGAG
31059814 GCAGAATGCGCAAG-TCGGGGATCGGC
257 GCAGAATGCGCAAGCT-GGGGATCGGC
31059840 TCGGTCCCCC
Statistics
Matches: 254, Mismatches: 23, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
329 4 0.02
330 245 0.96
331 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (330 bp):
CTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGG
GCGCTCAATCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGGCCCCCCTCTGCATGC
CACCGATCCTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATAGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGAGCTCGACCGGTCGGAGAGGCAG
AATGCGCAAGCTGGGGATCGGCCCGACCCGGTCAACCCTCGGTCCGATCCGATCTTAGACTGGGA
ATGAA
Found at i:31060448 original size:158 final size:158
Alignment explanation
Indices: 31059936--31060508 Score: 589
Period size: 158 Copynumber: 3.6 Consensus size: 158
31059926 ACTCCGTATG
*
31059936 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* ** * * * ** * ** *
31060000 TCGGTC-GAAAAGGTAGAATACGCAAGGTGGGGATTGGCCCGGTCCCCCCTTTGTGCTATCGATC
65 CCGACCAG-AGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCGTGCTACCGATC
* * * * * *
31060064 CTGCTATCACAACCCTCAGTTCGGTCCAAT
129 CTGCTACCACAACCATCGGTCCGATCCGAT
* * * * *
31060094 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * *
31060159 CAATCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTACCGAT-C
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCC-CTGCGTGCTACCGATCC
* * * **
31060223 TCGCTGCCACAA-CACTCGATCCGA-CTGGGG
130 T-GCTACCACAACCA-TCGGTCCGATC-CGAT
* * * * *
31060253 CTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
31060318 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAATCCCCCCTGCGTGTTGCCAATCCT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCGTGCTACCGATCCT
*
31060383 GCTACCACAACCATCGGTCCAATCCGAT
131 GCTACCACAACCATCGGTCCGATCCGAT
* * * *
31060411 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
*
31060476 CGACCAGAGAGGCAGGATGCGCAAGCCGGGGAT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGAT
31060509 CGAACGGGTG
Statistics
Matches: 335, Mismatches: 71, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 210 0.63
159 124 0.37
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCGTGCTACCGATCCT
GCTACCACAACCATCGGTCCGATCCGAT
Found at i:31060510 original size:317 final size:317
Alignment explanation
Indices: 31059935--31060511 Score: 789
Period size: 317 Copynumber: 1.8 Consensus size: 317
31059925 AACTCCGTAT
* *
31059935 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * ** ** ** * *
31060000 TCGGTCGAAAAGGTAGAATACGCAAGGTGGGGATTGGCCCGGTCCCCCCTTTGTGCTATCGATCC
66 TCGGCCGAAAAGGCAGAATACGCAAGCCGGGGATTGGCCCAATCCCCCCTGCGTGCTACCAATCC
* * * **
31060065 TGCTATCACAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTACCACAACCATCAGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
31060130 CCCATGAAACGAGCGTGCAGGTGCTGAGCCAATCGGAGAGGCATAATGCGTAAGCCGGGGATCGA
196 CCCACGAAACGAGCGTACAGGCGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA
31060195 CCCAGTCCCCCTCTGCGTGCTACCGATCTCGCTGCCACAACACTCGATCCGACTGGG
261 CCCAGTCCCCCTCTGCGTGCTACCGATCTCGCTGCCACAACACTCGATCCGACTGGG
* * *
31060252 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
31060317 TCGGCC-AGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAATCCCCCCTGCGTGTTGCCAATC
66 TCGGCCGA-AAAGGCAGAATACGCAAGCCGGGGATTGGCCCAATCCCCCCTGCGTGCTACCAATC
* *
31060381 CTGCTACCACAACCATCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
130 CTGCTACCACAACCATCAGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
31060446 ACCCACGAAATGAGCGTAC-GAGCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATC
195 ACCCACGAAACGAGCGTACAG-GCGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATC
31060510 GA
259 GA
31060512 ACGGGTGGTA
Statistics
Matches: 221, Mismatches: 37, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
316 2 0.01
317 219 0.99
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
TCGGCCGAAAAGGCAGAATACGCAAGCCGGGGATTGGCCCAATCCCCCCTGCGTGCTACCAATCC
TGCTACCACAACCATCAGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTACAGGCGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA
CCCAGTCCCCCTCTGCGTGCTACCGATCTCGCTGCCACAACACTCGATCCGACTGGG
Found at i:31061634 original size:158 final size:158
Alignment explanation
Indices: 31061133--31061634 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 158
31061123 ACTCCGTATG
* * *
31061133 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * **
31061198 TGGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCCT
66 CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCCGATCCT
* * * * * * * *
31061263 GCTGCCGTAATCCTTGGTCTGATCCAAT
131 ACTGTCGCAACCCTCGGTCTGGTTCGAT
* ** * * *
31061291 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTGAACCCACGGAACGAGCGAGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
31061355 CCGACTGAAGAGGCATAATGCATAAGCCAGGGATC-AGCTCAGTCCCCCTCTGCGTGCTGCCGGT
65 CCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGA-CCCAGTCCCCC-CTGCGTGCTGCCGAT
* ** * * **
31061419 CCCACTGT-GACAACCCTCGGTCCAGCTAGGG
128 CCTACTGTCG-CAACCCTCGGTCTGGTTCGAT
* * * * *
31061450 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCTCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
31061515 CGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGGTCACCCCTGCGTGCTGCCGATCCT
66 CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCCGATCCT
31061580 ACTGTCGCAACCCTCGGTCTGGTTCGAT
131 ACTGTCGCAACCCTCGGTCTGGTTCGAT
*
31061608 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
31061635 TTAGATTGGG
Statistics
Matches: 269, Mismatches: 67, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 150 0.56
159 115 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCCGATCCT
ACTGTCGCAACCCTCGGTCTGGTTCGAT
Found at i:31061637 original size:26 final size:26
Alignment explanation
Indices: 31061608--31061660 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31061598 CTGGTTCGAT
*
31061608 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
31061634 CTTAGATTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31061660 C
1 C
31061661 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31062263 original size:11 final size:11
Alignment explanation
Indices: 31062244--31062274 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
31062234 GTTAGGCTCA
31062244 CCGACGATGCT
1 CCGACGATGCT
*
31062255 CCGATGATGCT
1 CCGACGATGCT
31062266 CCGACGATG
1 CCGACGATG
31062275 GTGCCTCGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.19
Consensus pattern (11 bp):
CCGACGATGCT
Found at i:31062382 original size:26 final size:26
Alignment explanation
Indices: 31062344--31062408 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
31062334 GGCCCAAAAT
31062344 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31062370 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31062396 CTTAGACTAGGGA
1 CTTAGACT-GGGA
31062409 TAAACTTTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
25 1 0.03
26 31 0.86
27 4 0.11
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31062767 original size:26 final size:26
Alignment explanation
Indices: 31062738--31062790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31062728 CTGATCCAAT
*
31062738 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31062764 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31062790 C
1 C
31062791 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31063977 original size:26 final size:26
Alignment explanation
Indices: 31063935--31063987 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31063925 GGCTCAAACT
31063935 CTTAGACTGAAAGTGAACTCCGTATG
1 CTTAGACTGAAAGTGAACTCCGTATG
*
31063961 CTTAGACATGGAA-TGAACTCCGTATG
1 CTTAGAC-TGAAAGTGAACTCCGTATG
31063987 C
1 C
31063988 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAAAGTGAACTCCGTATG
Found at i:31064527 original size:26 final size:26
Alignment explanation
Indices: 31064475--31064527 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31064465 CCAATCCTAT
*
31064475 CTTAAACTGGGAATGAACTCTGCATG
1 CTTAAACTGGGAATGAACTCCGCATG
* * *
31064501 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGCATG
31064527 C
1 C
31064528 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGCATG
Found at i:31066310 original size:26 final size:26
Alignment explanation
Indices: 31066259--31066311 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31066249 TCGATCTGAT
* *
31066259 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACATATG
* *
31066285 CTTAGACTGGGGATGAACTACATATG
1 CTTAGACTAGGAATGAACTACATATG
31066311 C
1 C
31066312 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACATATG
Found at i:31066665 original size:26 final size:26
Alignment explanation
Indices: 31066627--31066677 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31066617 CTGGTTTGAT
31066627 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
31066653 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
31066678 GGCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:31066956 original size:870 final size:882
Alignment explanation
Indices: 31065573--31067193 Score: 2018
Period size: 870 Copynumber: 1.9 Consensus size: 882
31065563 AACTCTATAT
* ** *
31065573 GCTTAGACATGAAATGAACTCCGTATGGCGCGTAGAGCCAACCCACGAAATGATCGTGCGGGCAC
1 GCTTAGACATGAAATGAACTCCGTATGGCGCGTAGAGCCAACCAACGAAACAAACGTGCGGGCAC
* * *
31065638 TCAATCGGCTGGAGAGGTAGAATGCGCAAGCCAGGGATCTGCCGAGTCCCCCCTGAGTGCATGCC
66 TCAACCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCTGCCGAATCCCCCCTGAGTGCATGCC
* * * * *
31065703 GATACCTGCTGGCTGGTCCTAGCTGCCGTAACCCCTTGGTCTGATCCAAATCTTAGATTGGGATA
131 GATACCTGCTGGCTGGTCCTAGCTGCCGCAACCCCTCGATCTGATCCAAATCTTAGACTAGGATA
* * *
31065768 TGAACTCCGTATGGCTTAGACATAGAATGAACTCTGTATGGCCTAAGCCACCCTGAATGAGCGTG
196 TGAACTCCGTATGCCTTAGACATAGAATGAACTCCGTATGGCCTAAGCCACCCTGAATGAGCATG
* * * * * * * *
31065833 AGGGTGCCTCAGCCGGTCGGAGAGGCGAAATGCACAAGCCGGGGACCGGCTCGATCCCCCCCTAC
261 AGGGCGCCTCAGCCGGCCGGAAAGGAGAAATGCACAAGCCAGGGACCAGCCCGATCCCCCACTAC
* *
31065898 CTGCAGTCGTTCCTACTACCCGCAAACCCTCGGTCTGGTCTGATCTTAGACTGGAAATGAAATCC
326 CTGCAGTCGATCCTACTACCCGCAAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAAATCC
* * * *
31065963 GTATGCCTAAGTCGACCCACGAAACGAGCGTTCGGGCGCTGAGCCGACCGAAGAGGCATAATGCG
391 GTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGGCGCTGAGCCAACCGAAGAGGCATAATGCG
* * * * * *
31066028 CAAGCCGGGGATCGACCCAGTCCCTCTCTGCATGCTACCGGTCCCACTGCCACAACCCTCGGTCT
456 CAAGCCGGGGATCGACCCAGTCCCCCTCTACATCCTACCGATCCCACTCCCACAACCCTCGGTCC
*
31066093 GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TGGGCGTACGG
521 GGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACT-GGCGTACGG
* * *** *
31066157 G-AGCTTTGCCGG-TCGAAGAGGCAGAATGTGTAAGCCGAGGATCAGCCCGATCCCCCCTGCGTG
585 GCA-CTTAGCCGGCT-GAAGAGGCAAAATGCACAAACCGAGGATCAGCCCGATCCCCCCTGCGTG
* * * ** *
31066220 ATGTCGATCCTGCTGCCGTAACCCTCGATTC-GATCTGATCTTAGACTAGGAATGAACTCCGTAT
648 ATGCCGATCCTGCTACCGTAACCCTCGATCCAG-TCCAATCTTAGACTAGGAATGAACTCCGCAT
*
31066284 GCTTAGACTGGGGATGAACTACATATGCCTAAGTCAACCCGCAAAAAGAGCGTACGGGCACTTAG
712 GCTTAGACTGGCGATGAACTACATATGCCTAAGTCAACCCGCAAAAAGAGCGTACGGGCACTTAG
31066349 TCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCGATC
777 TCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCGATC
31066414 CCACTGTCAGTCCTGCTACCACAACCCTCGGTCCGGCCAGG
842 CCACTGTCAGTCCTGCTACCACAACCCTCGGTCCGGCCAGG
*
31066455 GCTTAGACATGGAATGAACTCCGTAT-GC-C-TA-AGCCAACCAACGAAACAAACGTGCGGGCAC
1 GCTTAGACATGAAATGAACTCCGTATGGCGCGTAGAGCCAACCAACGAAACAAACGTGCGGGCAC
* * * *
31066516 TCAGCC-GATCGGAGAGGCAGAATGCAG-AAGCCGGGGATC-GACCTAATCCCCCTCT-ACGTGC
66 TCAACCGGCT-GGAGAGGCAGAATGC-GCAAGCCAGGGATCTG-CCGAATCCCCC-CTGA-GTGC
* * * ***
31066577 -TGCCGAT-CTTGCT-GCTGGTCCTA-CTGTCGCAA-CCCTCGATCTGGT-TTGATCTTAGACTA
126 ATGCCGATACCTGCTGGCTGGTCCTAGCTGCCGCAACCCCTCGATCTGATCCAAATCTTAGACTA
*
31066636 GGA-ATGAACTCCGTAT-CCTTAGACATGGAATGAACTCCGTATGG-CTAAGCCAACCAAC-GAA
191 GGATATGAACTCCGTATGCCTTAGACATAGAATGAACTCCGTATGGCCTAAGCC-ACC--CTG-A
* ** *
31066697 ATGAGCATGCGGGCG-CTCAGCCGGCCGGAAAGGTAG-AATGCGTAAGCCATGGACCAGCCCGAT
252 ATGAGCATGAGGGCGCCTCAGCCGGCCGGAAAGG-AGAAATGCACAAGCCAGGGACCAGCCCGAT
* * * * *
31066760 CCCCCACTACGTGCTGTCGATCCTACT-GCCG-TAACCCTTGGTCCGGTCTGATCTTAGACTAGG
316 CCCCCACTACCTGCAGTCGATCCTACTACCCGCAAACCCTCGGTCCGGTCTGATCTTAGACT-GG
* ** * * *
31066823 -AATGAACTTTGTATGCCTAAGTCAACCCATGAAAAGAGCGTACGGGCGCTGAGCCAATCGGAGA
380 AAATGAAATCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGGCGCTGAGCCAACCGAAGA
* * * * *
31066887 GGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTCCTGCCGATCCCGCTCCCACA
445 GGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTACATCCTACCGATCCCACTCCCACA
* *
31066952 ACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATACCTTAGCCAACCCACGAAAC
510 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAAC
* * * * * ** * *
31067017 TGGTGTGCGGGCACTTAGCCGGCTGGAGAGGCAAAATGCACAAATCGGGGATTGGCTCGGTCCCC
575 TGGCGTACGGGCACTTAGCCGGCTGAAGAGGCAAAATGCACAAACCGAGGATCAGCCCGATCCCC
* * *
31067082 CCTGTGTGCTGCCGATCCTGCTACCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAAC
640 CCTGCGTGATGCCGATCCTGCTACCGTAACCCTCGATCCAGTCCAATCTTAGACTAGGAATGAAC
* * * * *
31067147 TCTGCGTGCTTAGACTGGCGATGAACTCCATATGGCTAAGTCCACCC
705 TCCGCATGCTTAGACTGGCGATGAACTACATATGCCTAAGTCAACCC
31067194 ACGAAATGAG
Statistics
Matches: 624, Mismatches: 100, Indels: 42
0.81 0.13 0.05
Matches are distributed among these distances:
870 342 0.55
871 37 0.06
872 74 0.12
873 27 0.04
874 10 0.02
875 7 0.01
876 10 0.02
877 8 0.01
878 72 0.12
879 9 0.01
880 1 0.00
881 2 0.00
882 25 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (882 bp):
GCTTAGACATGAAATGAACTCCGTATGGCGCGTAGAGCCAACCAACGAAACAAACGTGCGGGCAC
TCAACCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCTGCCGAATCCCCCCTGAGTGCATGCC
GATACCTGCTGGCTGGTCCTAGCTGCCGCAACCCCTCGATCTGATCCAAATCTTAGACTAGGATA
TGAACTCCGTATGCCTTAGACATAGAATGAACTCCGTATGGCCTAAGCCACCCTGAATGAGCATG
AGGGCGCCTCAGCCGGCCGGAAAGGAGAAATGCACAAGCCAGGGACCAGCCCGATCCCCCACTAC
CTGCAGTCGATCCTACTACCCGCAAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAAATCC
GTATGCCTAAGTCAACCCACGAAAAGAGCGTACGGGCGCTGAGCCAACCGAAGAGGCATAATGCG
CAAGCCGGGGATCGACCCAGTCCCCCTCTACATCCTACCGATCCCACTCCCACAACCCTCGGTCC
GGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACTGGCGTACGGG
CACTTAGCCGGCTGAAGAGGCAAAATGCACAAACCGAGGATCAGCCCGATCCCCCCTGCGTGATG
CCGATCCTGCTACCGTAACCCTCGATCCAGTCCAATCTTAGACTAGGAATGAACTCCGCATGCTT
AGACTGGCGATGAACTACATATGCCTAAGTCAACCCGCAAAAAGAGCGTACGGGCACTTAGTCGG
CCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCAC
TGTCAGTCCTGCTACCACAACCCTCGGTCCGGCCAGG
Found at i:31067008 original size:159 final size:159
Alignment explanation
Indices: 31066653--31067015 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 159
31066643 ACTCCGTATC
* * * *
31066653 CTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCAACGAAATGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATACGGGCGCTCAGC
** * * * * *
31066718 CGGCCGGAAAGGTAGAATGCGTAAGCCATGGACCAGCCCGATCCCCCACTACGTGCTGTCGATCC
66 CAACCGGAAAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCACTACGTCCTGCCGATCC
* * ** * *
31066783 TACTGCCGTAACCCTTGGTCCGGTCTGAT
131 CACTCCCACAACCCTCGGTCCGGTCTGAG
** * * * *
31066812 CTTAGAC-TAGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAAAGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATACGGGCGCTCAG
* * * * * * * *
31066876 CCAATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTCCTGCCGATC
65 CCAACCGGAAAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCACTACGTCCTGCCGATC
* *
31066941 CCGCTCCCACAACCCTCGGTCCGGT-TGGGG
130 CCACTCCCACAACCCTCGGTCCGGTCT-GAG
* * *
31066971 CTTAGACATGGAATGAACTCCCTATACCTTAGCCAACCCACGAAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
31067016 CTGGTGTGCG
Statistics
Matches: 161, Mismatches: 40, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
158 2 0.01
159 158 0.98
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATACGGGCGCTCAGC
CAACCGGAAAGGCAGAATGCGCAAGCCAGGGACCAGCCCGATCCCCCACTACGTCCTGCCGATCC
CACTCCCACAACCCTCGGTCCGGTCTGAG
Found at i:31067775 original size:11 final size:11
Alignment explanation
Indices: 31067759--31067791 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
31067749 CAGTTACGCT
*
31067759 CTCCGGCGATG
1 CTCCGGTGATG
31067770 CTCCGGTGATG
1 CTCCGGTGATG
31067781 CTCCGGTGATG
1 CTCCGGTGATG
31067792 GTGCCACGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.30, G:0.36, T:0.24
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:31067899 original size:26 final size:26
Alignment explanation
Indices: 31067861--31067913 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31067851 GGCTCAAACT
*
31067861 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31067887 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31067913 C
1 C
31067914 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31070734 original size:26 final size:26
Alignment explanation
Indices: 31070696--31070746 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31070686 GGCTCAAACT
31070696 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCTGTATC
31070722 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCTGTAT
31070747 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATC
Found at i:31071014 original size:158 final size:158
Alignment explanation
Indices: 31070723--31071029 Score: 413
Period size: 158 Copynumber: 1.9 Consensus size: 158
31070713 CTCTGTATCC
** * *
31070723 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACC
* *
31070788 GGCCAGAGAGGTAGAATACACAAGCCGAGGATCGACCTAGTCCCCTCTGCGTGCTGTCGGTCCCG
66 GGCCAGAGAGGAAGAATACACAAGCCGAGGATCGACCTAGTCCCCTCTGCGTGCTGTCGATCCCG
31070853 CTACCACAACCCTCGGTCCGGCTGGGGA
131 CTACCACAACCCTCGGTCCGGCTGGGGA
* *
31070881 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC-CTGAAACGGGCGTGCGGGCGCTCAAC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-GAAACGAGCGTACGGGCGCTCAAC
* * * * * * * *
31070945 CGGTCGGAGAGGAAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCC-CTTGCGTGCTG-CTGATC
65 CGGCCAGAGAGGAAGAATACACAAGCCGAGGATCGACCTAGTCCCCTC-TGCGTGCTGTC-GATC
*
31071008 CTGCTACCACAACCCTCGGTCC
128 CCGCTACCACAACCCTCGGTCC
31071030 AATCTGATCT
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
157 3 0.02
158 126 0.98
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACC
GGCCAGAGAGGAAGAATACACAAGCCGAGGATCGACCTAGTCCCCTCTGCGTGCTGTCGATCCCG
CTACCACAACCCTCGGTCCGGCTGGGGA
Found at i:31071234 original size:26 final size:26
Alignment explanation
Indices: 31071196--31071248 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31071186 GGCTCAAACT
31071196 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
31071222 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
31071248 C
1 C
31071249 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31072149 original size:26 final size:26
Alignment explanation
Indices: 31072111--31072163 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31072101 GGCTCAAACT
31072111 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
31072137 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31072163 C
1 C
31072164 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31072651 original size:26 final size:26
Alignment explanation
Indices: 31072613--31072665 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31072603 GGCTCAAACT
31072613 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
31072639 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
31072665 C
1 C
31072666 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31073897 original size:158 final size:160
Alignment explanation
Indices: 31073552--31073897 Score: 353
Period size: 160 Copynumber: 2.2 Consensus size: 160
31073542 AACTCTGTAT
* * *
31073552 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* **
31073616 ACCGGCCAGAGAGGTAGAATACGCAAGCCGAGGATCGACCCAGTCGCCCCTCTGCGTGCTGTCGG
65 ACCGGCCAGAGAGGAAGAATACGCAAGCCGAGGATCGACCCAGTCGCCCCTCTGCGTGCTGTCAA
* ** *
31073681 TCCCGCTACTACAACCCTCGATCCGGTTGGG
130 TCCCGCTACCACAACCCTCGATCCAATTGGA
* * * * **
31073712 GATTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGGCTCA
1 GCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * * * * **
31073776 GCCGGTCGGAGAGGAAGAATGCGCAAGTCGGGGATCGGCCTGGTC-CCCCT-TGCGTGCTG-CTA
65 ACCGGCCAGAGAGGAAGAATACGCAAGCCGAGGATCGACCCAGTCGCCCCTCTGCGTGCTGTC-A
* *
31073838 ATCCTGCTACCACAACCCTCGGTCCAATCT-GA
129 ATCCCGCTACCACAACCCTCGATCCAAT-TGGA
* *
31073870 TCTTAGACTGGGAATGAACTTCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
31073898 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.01
158 54 0.36
159 7 0.05
160 88 0.59
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (160 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
CCGGCCAGAGAGGAAGAATACGCAAGCCGAGGATCGACCCAGTCGCCCCTCTGCGTGCTGTCAAT
CCCGCTACCACAACCCTCGATCCAATTGGA
Found at i:31073923 original size:26 final size:26
Alignment explanation
Indices: 31073871--31073923 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31073861 CCAATCTGAT
**
31073871 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCCAATG
* *
31073897 CTTAGACTGGGGATGAATTTCCAATG
1 CTTAGACTGGGAATGAACTTCCAATG
31073923 C
1 C
31073924 CACCGGTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCCAATG
Found at i:31074066 original size:26 final size:26
Alignment explanation
Indices: 31074028--31074080 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31074018 GGCTCAAACT
31074028 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31074054 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31074080 C
1 C
31074081 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31074993 original size:26 final size:26
Alignment explanation
Indices: 31074955--31075007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31074945 GGCTCAAACT
*
31074955 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31074981 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31075007 C
1 C
31075008 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31075319 original size:161 final size:159
Alignment explanation
Indices: 31074980--31075327 Score: 382
Period size: 161 Copynumber: 2.2 Consensus size: 159
31074970 AACTCTGTAT
* * *
31074980 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAA
* * *
31075045 CCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAATCCCTCTCTGCGTGCTGTCGGTC
66 CCGGCCAGAGAGGAAGAATGCGCAAGCCGAGGATCGACCCAATCCCTCTCTGCGTGCTCTCGATC
*
31075110 CCGCTACCACAACCCTCGGTCCGGCTGGG
131 CCGCTACCACAACCCTCGGTCCGGCTGGA
* * * * *
31075139 GATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCA-
* * * * * * **
31075204 TTGCCGGTCGGAGAGGAAGAATGCGCAAGTCGGGGATCGGCCCGGTCCC-C-CATGCGTGCTACT
65 --ACCGGCCAGAGAGGAAGAATGCGCAAGCCGAGGATCGACCCAATCCCTCTC-TGCGTGCT-CT
* * *
31075267 -GATCCTGCTACCACAACCCTCGGTCTGATCT-GA
126 CGATCCCGCTACCACAACCCTCGGTCCG-GCTGGA
*
31075300 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31075328 TTAAACTGGG
Statistics
Matches: 156, Mismatches: 26, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
159 56 0.36
160 2 0.01
161 57 0.37
162 41 0.26
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAA
CCGGCCAGAGAGGAAGAATGCGCAAGCCGAGGATCGACCCAATCCCTCTCTGCGTGCTCTCGATC
CCGCTACCACAACCCTCGGTCCGGCTGGA
Found at i:31075509 original size:26 final size:26
Alignment explanation
Indices: 31075458--31075510 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31075448 GGCTCAAACT
*
31075458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31075484 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31075510 C
1 C
31075511 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31075769 original size:185 final size:182
Alignment explanation
Indices: 31075457--31075852 Score: 562
Period size: 185 Copynumber: 2.2 Consensus size: 182
31075447 TGGCTCAAAC
31075457 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
* * *
31075522 CACTAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
66 CACGAAACGAGCGTGAGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
* * *
31075587 CGATCCCCCCCTGCGTGCTGTCTATCCTAC-TGCCAATACCCTCGATCTGGTCTGA
131 CGAT-CCCCCCTGCGTGCTATCGATCCTACATG-C-A-ACCCTCGATCCGGTCTGA
* **
31075642 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
* * * * *
31075707 CACGAAATGAGCGTGAGGGTGCTTAGCCGGCCGGAGAGGC-GAAATGTGCAAGCCAGGGATCGGC
66 CACGAAACGAGCGTGAGGGTGCTCAGCCGACCAGAGAGGCAG-AATGCGCAAGCCAGGGATCGGC
* * *
31075771 CTGATCCCCCCTGCGTGCTATCGATCCTGCTATGCAACCCTCGGTCCGGTCTGA
130 CCGATCCCCCCTGCGTGCTATCGATCCTAC-ATGCAACCCTCGATCCGGTCTGA
*
31075825 TCTTAGACTGGGAATGAACTCTGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
31075853 CTAAGTCGAC
Statistics
Matches: 189, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
183 42 0.22
184 24 0.13
185 121 0.64
186 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (182 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACC
CACGAAACGAGCGTGAGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
CGATCCCCCCTGCGTGCTATCGATCCTACATGCAACCCTCGATCCGGTCTGA
Found at i:31076051 original size:159 final size:155
Alignment explanation
Indices: 31075668--31076084 Score: 421
Period size: 159 Copynumber: 2.6 Consensus size: 155
31075658 AACTCCGTAT
* *
31075668 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCG-TGAGGGTGCTTA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATG-G-GTTGCGGGTGCTTA
* * * *
31075732 GCCGGCCGGAGAGGCGAAATGTGCAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTATCGATC
64 GCCGGCCGGAGAGGC-AAATGTGCAAGCCGGGGATCGACCTGATCCCCCCGGCGTGCTACCGATC
** **
31075797 CTGCTATGCAACCCTCGGTCCGGTCTGA
128 CCACTACACAACCCTCGGTCCGGTCTGA
* * * * *
31075825 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCGACCCACGAAACGAGCGTT-CGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATG-G-GTTGCGGGTGCTT
* ** *
31075888 AGCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCT-ATCCTCTTCGGTGTGCTACCG
63 AGCCGGCCGGAGAGGCA-AATGTGCAAGCCGGGGATCGAC-CTGATCC-CCCCGGCGTGCTACCG
* * *
31075952 GTCCCACTACCACAACCCTCGGTCTGG-CTGGG
125 ATCCCACTA-CACAACCCTCGGTCCGGTCT-GA
** * *
31075984 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTATGCGGGAGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGGGT-TGCGGGTGCTTAG
* * *
31076049 CCGACTGGAGAGGCAGAATGTGCAAGCCGAGGATCG
65 CCGGCCGGAGAGGCA-AATGTGCAAGCCGGGGATCG
31076085 GCTTGGTCCC
Statistics
Matches: 214, Mismatches: 36, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
156 2 0.01
157 93 0.43
158 24 0.11
159 94 0.44
160 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGGGTTGCGGGTGCTTAGC
CGGCCGGAGAGGCAAATGTGCAAGCCGGGGATCGACCTGATCCCCCCGGCGTGCTACCGATCCCA
CTACACAACCCTCGGTCCGGTCTGA
Found at i:31076537 original size:12 final size:12
Alignment explanation
Indices: 31076520--31076544 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31076510 TCTTAGACTG
31076520 GGAATGAACTCC
1 GGAATGAACTCC
31076532 GGAATGAACTCC
1 GGAATGAACTCC
31076544 G
1 G
31076545 TATGGCTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.28, T:0.16
Consensus pattern (12 bp):
GGAATGAACTCC
Found at i:31076936 original size:158 final size:158
Alignment explanation
Indices: 31076532--31076957 Score: 441
Period size: 158 Copynumber: 2.7 Consensus size: 158
31076522 AATGAACTCC
* **
31076532 GGAATGAACTCCGTATGGCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCTAGCCAGA
1 GGAATGAACTCCGTAT-GCTTAGCCAACCCACGAAATCGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * ** *
31076596 GAGGTAGAATACGCAAGCCGAGGACCGGCCCGATCCACCCCTGCGTGCTTTCGATCCTGCTACCA
65 GAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCC-CCCCTGCGTCCTACCGATCCCGCTACCA
*
31076661 CAACCCTCGGTCCGGTCTGATCTTAGACTG
129 CAACCCTCGGTCCGGTCTGAGCTTAGACTG
* ** * * * * *
31076691 GGAATGAACTCCGTATGCTTAAGTCAACCCATTAAAT-GAGCGTACGGGCGTTGAGCCGACCGGA
1 GGAATGAACTCCGTATGCTT-AGCCAACCCACGAAATCGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * ** *
31076755 GAGGCATAATGCGCAAGCTGGGGATCGGCTTGGTCCCCCTCTGC-TCCTACCGATCCCGCTGCCA
65 GAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTCCTACCGATCCCGCTACCA
* * *
31076819 CAACCCTCGGTCTGG-CTGGGGCTTGGACAT-
129 CAACCCTCGGTCCGGTCT-GAGCTTAGAC-TG
* * *
31076849 GTAATGAACTCCCTATGCATTAGCCAACCCACGAAATCG-GCGTGCGGGCGCTCAGCCGGCTAGA
1 GGAATGAACTCCGTATGC-TTAGCCAACCCACGAAATCGAGCGTGCGGGCGCTCAGCCGGCCAGA
* *
31076913 GAGGTAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCCCTGCGT
65 GAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGT
31076958 GCTGTCGTAA
Statistics
Matches: 212, Mismatches: 47, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 123 0.58
159 83 0.39
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCTTAGCCAACCCACGAAATCGAGCGTGCGGGCGCTCAGCCGGCCAGAG
AGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTCCTACCGATCCCGCTACCACA
ACCCTCGGTCCGGTCTGAGCTTAGACTG
Found at i:31078248 original size:26 final size:26
Alignment explanation
Indices: 31078210--31078262 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31078200 GGCTCAAACT
31078210 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31078236 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
31078262 C
1 C
31078263 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31078909 original size:26 final size:26
Alignment explanation
Indices: 31078880--31078932 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31078870 TCGATCCTGT
31078880 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
* *
31078906 CTTAGGCTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
31078932 C
1 C
31078933 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:31079276 original size:26 final size:26
Alignment explanation
Indices: 31079247--31079297 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31079237 CCGATTCGAT
31079247 CTTAGAC-TGGGAATGAACTCCGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
*
31079273 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
31079298 GGTTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:31084212 original size:26 final size:26
Alignment explanation
Indices: 31084176--31084226 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31084166 CCGATCCGAT
*
31084176 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
31084202 CTTATACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
31084227 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:31084587 original size:26 final size:26
Alignment explanation
Indices: 31084558--31084610 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31084548 CCGGTCTGAT
31084558 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31084584 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31084610 C
1 C
31084611 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31085120 original size:353 final size:352
Alignment explanation
Indices: 31084556--31085205 Score: 856
Period size: 353 Copynumber: 1.8 Consensus size: 352
31084546 GTCCGGTCTG
* * * * *
31084556 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAAACTAGGAATGAAATCCGAATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
* * ** * * *
31084621 CCACGAATTGAGCATGCGGGTGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAAC
66 CAACAAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAAC
* * * *
31084686 CTGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCAGTTTGATCCAATCTTAGACAG
131 CCGATCCCCCCTGCGTGCTGTCAATCCTACTGCCACAACCCTCAGTTAGATCCAATCTTAGACAG
* * ***
31084751 GGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCACACGGGTGCTGAACCGGTTGGAG
196 GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCACACGGGTGCTGAACCGACCGGAG
*
31084816 AGGCATAATGCGCAAGT-TGAAGATCAGCCCGATCCCCCTACGTGCTATCAATCTTGCTACTGGT
261 AGGCATAATGCGCAAGTCAG-AGATCAGCCCGATCCCCCTACGTGCTATCAATCTTGCTACTGGT
31084880 TCTCTACCGTAACCATCAGTCCCGTCCA
325 TCTCTACCGTAACCATCAGTCCCGTCCA
*
31084908 ATCTTAAACTAGGAATGAAATCCGAATGCTTAGACATGGAATGAACTCCGTACGCTTAAGCCAAC
1 ATCTTAAACTAGGAATGAAATCCGAATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
** * ** * **
31084973 CAACAAAACGAGTGTGCGGGCGCTCAG-CTGGCCGGAGAGGCAGAATGCACAAGTTGGGGACCGT
66 CAACAAAACGAGCATGCGGGCGCTCAGTC-GGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAA
* **
31085037 CCCGATCCCCCACTGCGTGCTGTCAATCCTACTGCCACAACCCTCGGTTCAG-TCTGATCTTAGA
130 CCCGATCCCCC-CTGCGTGCTGTCAATCCTACTGCCACAACCCTCAGTT-AGATCCAATCTTAGA
* * * **** *
31085101 CTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACAAGTGTTCGGGTGCTGAGCCGACCG
193 CAGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCACACGGGTGCTGAACCGACCG
*
31085166 GAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCC
258 GAGAGGCATAATGCGCAAGTCAGAGATCAGCCCGATCCCC
31085206 TTCTGCATGC
Statistics
Matches: 251, Mismatches: 43, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
351 1 0.00
352 115 0.46
353 133 0.53
354 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (352 bp):
ATCTTAAACTAGGAATGAAATCCGAATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
CAACAAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAAC
CCGATCCCCCCTGCGTGCTGTCAATCCTACTGCCACAACCCTCAGTTAGATCCAATCTTAGACAG
GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCACACGGGTGCTGAACCGACCGGAG
AGGCATAATGCGCAAGTCAGAGATCAGCCCGATCCCCCTACGTGCTATCAATCTTGCTACTGGTT
CTCTACCGTAACCATCAGTCCCGTCCA
Found at i:31085234 original size:159 final size:159
Alignment explanation
Indices: 31084935--31085436 Score: 419
Period size: 159 Copynumber: 3.2 Consensus size: 159
31084925 AAATCCGAAT
* * * * *
31084935 GCTTAGACATGGAATGAACTCCGTACGCTTAAGCCAACCAACAAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAG
* * ** * *
31085000 CTGGCCGGAGAGGCAGAATGCACAAGTTGGGGACCGTCCCGATCCCCCACTGCGTGCTGTCAATC
66 CCGACCGGAGAGGCAGAATGCACAAGTCAGGGACAGTCCCGATCCCCCACTGCATGCTGTCAATC
* * * *
31085065 CTACTGCCACAACCCTCGGTTCAGTCT-GA
131 CCACTACCACAACCCTCAG-TCAGGCTAGA
* ** * * *
31085094 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACAAGTGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCA
* * ** **
31085158 GCCGACCGGAGAGGCATAATGCGCAAGTCAGGGATCAG-CCCGATCCCCTTCTGCATGCTGTCGG
65 GCCGACCGGAGAGGCAGAATGCACAAGTCAGGGA-CAGTCCCGATCCCCCACTGCATGCTGTCAA
* *
31085222 TCCCACTACCACAACCCTCAGTCCGGCTAGG
129 TCCCACTACCACAACCCTCAGTCAGGCTAGA
* * * *
31085253 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGA-TCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGT-GTGCGGGCGCTCA
* * * * * * *
31085317 GCC-AGTCGG-GACGTAGAATGCACAAGTCGGGGATCAGT-TCGAT-CCCC-CTGCGTGCTGTCG
65 GCCGA-CCGGAGAGGCAGAATGCACAAGTCAGGGA-CAGTCCCGATCCCCCACTGCATGCTGTCA
** ** * ** * * *
31085377 ATCCTGCTGTCGCAACCCTTGGTCCGGTTTGA
128 ATCCCACTACCACAACCCTCAGTCAGGCTAGA
* *
31085409 TCTTAGACTTGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
31085437 TTAGACAAGG
Statistics
Matches: 274, Mismatches: 62, Indels: 17
0.78 0.18 0.05
Matches are distributed among these distances:
156 58 0.21
157 3 0.01
158 35 0.13
159 175 0.64
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGTCAGGGACAGTCCCGATCCCCCACTGCATGCTGTCAATC
CCACTACCACAACCCTCAGTCAGGCTAGA
Found at i:31085439 original size:26 final size:26
Alignment explanation
Indices: 31085410--31085462 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31085400 CCGGTTTGAT
** *
31085410 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
*
31085436 CTTAGACAAGGGATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
31085462 C
1 C
31085463 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:31085825 original size:26 final size:26
Alignment explanation
Indices: 31085787--31085839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31085777 CCGATCTGAT
31085787 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31085813 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31085839 C
1 C
31085840 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31085991 original size:26 final size:26
Alignment explanation
Indices: 31085953--31086005 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31085943 TACTGCTGGT
*
31085953 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31085979 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31086005 C
1 C
31086006 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31086085 original size:166 final size:165
Alignment explanation
Indices: 31085786--31086099 Score: 445
Period size: 166 Copynumber: 1.9 Consensus size: 165
31085776 TCCGATCTGA
*
31085786 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
** ** * * * *
31085851 CATCAAACGAGCGTGTGGGCACTCAGTCGGCTGGAGAGGTAGAATGCGTAAGTCGAGGATCGACC
66 CATCAAACGAGCGTGCAGGCACTCAACCAGCTGGAGAGGCAGAATGCGCAAGTCGAGGATCAACC
31085916 CGGTCCCCCCCTGCGTGCTGTCGATCCTACTGCTGG
131 CGGT-CCCCCCTGCGTGCTGTCGATCCTACTGCTGG
*
31085952 TCTTAGACTGGGAATGAACTCCTTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
31086017 CATGAATCGAGCGTGCAGGCGCTCAACCAGCTGGAGAGGCAGAATGTC-CAAG-CTGAGGA-CTA
66 CATCAAACGAGCGTGCAGGCACTCAACCAGCTGGAGAGGCAGAATG-CGCAAGTC-GAGGATC-A
*
31086079 ACCCGGTCCCCTCTGCGTGCT
128 ACCCGGTCCCCCCTGCGTGCT
31086100 ATCAAACCTG
Statistics
Matches: 131, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
165 15 0.11
166 115 0.88
167 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (165 bp):
TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATCAAACGAGCGTGCAGGCACTCAACCAGCTGGAGAGGCAGAATGCGCAAGTCGAGGATCAACC
CGGTCCCCCCTGCGTGCTGTCGATCCTACTGCTGG
Found at i:31086482 original size:26 final size:26
Alignment explanation
Indices: 31086453--31086505 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31086443 CTGATCCGAT
31086453 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31086479 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31086505 C
1 C
31086506 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31087493 original size:26 final size:26
Alignment explanation
Indices: 31087464--31087539 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
31087454 CCGATCTGAT
* *
31087464 CTTAGACTGGGAACGAACTCTGTACG
1 CTTAGATTGGGAATGAACTCTGTACG
31087490 CTTAGATTGGGAATGAACTCTGTACG
1 CTTAGATTGGGAATGAACTCTGTACG
*
31087516 CTTAGATTGGGGATGAACTCTGTA
1 CTTAGATTGGGAATGAACTCTGTA
31087540 TGCCTAAGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTACG
Found at i:31088251 original size:158 final size:159
Alignment explanation
Indices: 31087655--31088298 Score: 642
Period size: 159 Copynumber: 4.1 Consensus size: 159
31087645 CTGCTGCTGG
* * * * *
31087655 TCCTACTGCCGCAACCCTCAGTTCGGTCTGATCTTAGGCTGGGAATGAATTCCGTATGCCTAAGC
1 TCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
31087720 CAACCCACGAAATGAGCTTGCGGGCGCTTAGCCTACCGAAGAGGC-TGAATGCGCAAGCCGA-GA
66 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCAT-AATGCGCAAGCCGAGGA
31087783 TC-A-------CCCC-CTGCATGCTGTCGA
130 TCAACCCGGTCCCCCTCTGCATGCTGTCGA
* * * * * * *
31087804 TCCTACTGTCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
31087869 CAACCCATGAAATGAGCGTACGGGCACTGAGCC-AGTCGAAGAGGCATAATGCGTAAGTCGAGGA
66 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGA-TCGAAGAGGCATAATGCGCAAGCCGAGGA
* *
31087933 TCAACCCGGTCCCCCTCTGCGTGCTGCCGA
130 TCAACCCGGTCCCCCTCTGCATGCTGTCGA
* * * ** *
31087963 TCCTGCTACCACAACCCTC-GATTCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTA
1 TCCTGCTGCCGCAACCCTCAG-TCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
* * * * * * *
31088025 AGTCAACCCACGAAACGGGCATGCGGGTGCTCGA-CCGATCGGAGAGGCAGAATGCACAAGTCGA
63 AGTCAACCCACGAAACGAGCGTGCGGGCGCT-GAGCCGATCGAAGAGGCATAATGCGCAAGCCGA
* *
31088089 GGATCAACCCGGT-CCCCTCTGCGTGCTGTCAA
127 GGATCAACCCGGTCCCCCTCTGCATGCTGTCGA
31088121 TCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
31088186 GAACCCACGAAACGAGTGTGCGGGCGCTGAGTCGGTCGAAGAGGCATAATGCGCAAGCC-AGGGA
66 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGA-GGA
** *
31088250 TCGGCTCGGTCCCCCTCTGCATGCTG-CTGA
130 TCAACCCGGTCCCCCTCTGCATGCTGTC-GA
* *
31088280 TCCCGCTGCCACAACCCTC
1 TCCTGCTGCCGCAACCCTC
31088299 GGTCTGGCTC
Statistics
Matches: 402, Mismatches: 69, Indels: 38
0.79 0.14 0.07
Matches are distributed among these distances:
148 1 0.00
149 104 0.26
150 5 0.01
151 1 0.00
157 4 0.01
158 131 0.33
159 152 0.38
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
TCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGAGGAT
CAACCCGGTCCCCCTCTGCATGCTGTCGA
Found at i:31088982 original size:26 final size:26
Alignment explanation
Indices: 31088944--31088994 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31088934 GGCTTAAACT
31088944 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31088970 CTTAGACAT-GGAATGAAGTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
31088995 CCATAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31089317 original size:26 final size:26
Alignment explanation
Indices: 31089288--31089340 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31089278 CCAATCCGAT
31089288 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
31089314 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
31089340 C
1 C
31089341 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:31089617 original size:26 final size:26
Alignment explanation
Indices: 31089583--31089635 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31089573 CTGCGTGCTA
31089583 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31089609 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31089635 C
1 C
31089636 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31090488 original size:157 final size:157
Alignment explanation
Indices: 31089989--31090488 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 157
31089979 ACTCCGCATG
* *
31089989 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
31090054 TGGCCGAAGAGGTAGAATGCGCAAGCCAGG-GACCA-GCCTAGCCCCTCCTGTGTGCTGTCGATC
66 CGACTGGAGAGGCAGAATGCGCAAG-CAGGAGATCAGGCC-AGTCCCTCCTGCGTGCTGCCGATC
** * *
31090117 CTGCTATTGGAACCCTCGATCTGGTCTGAT
129 CTGCTACCGCAACCCTCGATC-CGTCTGAT
* * * *
31090147 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-GACT-G
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCG-CTCA
* * * * * * * * *
31090209 GTCGA-TCAGAGAGGCATAATGCGCCAGC-CGAGGATCAGCCCAATCCCCCTCTGCGTGCTGCAG
64 GCCGACT-GGAGAGGCAGAATGCGCAAGCAGGA-GATCAGGCCAGTCCCTC-CTGCGTGCTGCCG
*** * * * **
31090272 ATCCCATTACCACAACCCTCGGTCCGACTGGGG
126 ATCCTGCTACCGCAACCCTCGATCCGTCT-GAT
* * * *
31090305 CTTGGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* *
31090370 CAACTGGAGAGGCAGAATGCGCAAGCAGGAGATCGGGCCAGTCCCTCCTGCGTG-TGCCGATCCT
66 CGACTGGAGAGGCAGAATGCGCAAGCAGGAGATCAGGCCAGTCCCTCCTGCGTGCTGCCGATCCT
*
31090434 GCTACCGCAACCCTCAATCCAGTCTGAT
131 GCTACCGCAACCCTCGATCC-GTCTGAT
*
31090462 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
31090489 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 67, Indels: 31
0.73 0.19 0.09
Matches are distributed among these distances:
155 1 0.00
156 2 0.01
157 76 0.29
158 142 0.55
159 36 0.14
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACTGGAGAGGCAGAATGCGCAAGCAGGAGATCAGGCCAGTCCCTCCTGCGTGCTGCCGATCCT
GCTACCGCAACCCTCGATCCGTCTGAT
Found at i:31090498 original size:26 final size:26
Alignment explanation
Indices: 31090462--31090514 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31090452 CCAGTCTGAT
31090462 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
31090488 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31090514 C
1 C
31090515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31090877 original size:26 final size:26
Alignment explanation
Indices: 31090839--31090891 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31090829 TGCAAAAAAT
31090839 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31090865 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31090891 C
1 C
31090892 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31091372 original size:26 final size:26
Alignment explanation
Indices: 31091334--31091389 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
31091324 CTGATTTGAT
* *
31091334 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
31091360 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGAC-TGGGAATAAACTCCATATG
31091386 CTTA
1 CTTA
31091390 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:31091774 original size:159 final size:156
Alignment explanation
Indices: 31091359--31091804 Score: 387
Period size: 159 Copynumber: 2.8 Consensus size: 156
31091349 AACTCCGTAT
* * * *
31091359 GCTTAGACATGGAATAAACTCCATATGCTTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *** * * * * *
31091424 CTGGTTGGAGAGGCAGAATGCGCAAGCCACGAACCAGCCAGGTCCCCCTGCATGCTGTCGATCCT
66 C-CGACCGAGAGGCAAAATGCGCAAGCCAGGATCGAGCCAGGTCCCCCTGCATGCTGTCGATCCC
*** * * *
31091489 GCTGTTGCAACCCTCGGTCTGGTTCGA
130 GCTGCCACAACCCTCAGTCCGGCTCGA
* * * * * * * * * *
31091516 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCCGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
31091580 GCCGACTGAAGAGGCACAATGCGCAAGCCGGGGATCGA-CTC-GGTCCCCCTCTGCATGCTGTCG
65 GCCGACCG-AGAGGCAAAATGCGCAAGCC-AGGATCGAGC-CAGGT-CCCC-CTGCATGCTGTCG
* *
31091643 ATCCCGCTGCCACAACCCTCAGTCCGGCTGGG
125 ATCCCGCTGCCACAACCCTCAGTCCGGCTCGA
* * ** *
31091675 GCTTAGACATGGAATGGACTCCCTACACCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
31091740 CCGACCCGAGAGGCAAAATGCGCAAGCCAAGGATCG-GCCCGATCCCCACTACATGTTGTCGATC
66 CCGA-CCGAGAGGCAAAATGCGCAAGCC-AGGATCGAGCCAGGTCCCC-CTGCATGCTGTCGATC
31091804 C
128 C
31091805 TGCTATCGCA
Statistics
Matches: 225, Mismatches: 54, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 73 0.32
158 29 0.13
159 117 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAGAGGCAAAATGCGCAAGCCAGGATCGAGCCAGGTCCCCCTGCATGCTGTCGATCCCG
CTGCCACAACCCTCAGTCCGGCTCGA
Found at i:31091864 original size:26 final size:27
Alignment explanation
Indices: 31091828--31091887 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
31091818 CTCAATCTGG
*
31091828 TCCG-ATG-TTAGATTA-GGAATGAAC
1 TCCGTATGCTTAGACTAGGGAATGAAC
*
31091852 TCCGTATGCTTAGACTAGGGGATGAAC
1 TCCGTATGCTTAGACTAGGGAATGAAC
31091879 TCCGTATGC
1 TCCGTATGC
31091888 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 7 0.23
27 17 0.55
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (27 bp):
TCCGTATGCTTAGACTAGGGAATGAAC
Found at i:31092156 original size:184 final size:184
Alignment explanation
Indices: 31091675--31092229 Score: 662
Period size: 184 Copynumber: 3.0 Consensus size: 184
31091665 TCCGGCTGGG
* * * ** *
31091675 GCTTAGACATGGAATGGACTCCCTACACCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
31091740 CCGACCCGAGAGGCAAAATGCGCAAGCCAAGGATCGGCCCGATCCCCACTACATGTTGTCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCTCGGTCCCCCCTACATGTTGTCGATCC
** * * * * *
31091805 TGCTATCGCAACCCTCAATCTGGTCCGATGTTAGATTAGGAATGAACTCCGTAT
131 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
31091859 GCTTAGACTAGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCA
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *** * * * *
31091924 GTCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCAGTCCCCCCTACGTGCTATCGATC
65 GTCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCTCGGTCCCCCCTACATGTTGTCGATC
* * *
31091989 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
130 CTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
31092044 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCACTCAA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
31092109 TCGGCCGGAGAAGCAGAATGCGCAAGCCAAGGA-CTGGCTCGGTCCCCCTTGCATGTTGTCGATC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATC-GGCTCGGTCCCCCCTACATGTTGTCGATC
* ** *
31092173 CTACTGCTACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
31092228 GC
1 GC
31092230 CTAAGTTAAC
Statistics
Matches: 306, Mismatches: 63, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
183 1 0.00
184 156 0.51
185 149 0.49
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCTCGGTCCCCCCTACATGTTGTCGATCC
TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:31092343 original size:158 final size:157
Alignment explanation
Indices: 31092054--31092617 Score: 512
Period size: 158 Copynumber: 3.6 Consensus size: 157
31092044 GCTTAGATAT
* * * * * * ** * *
31092054 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCACTCAATCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAG
* * *** * * * * * * ** *
31092119 AAGCAGAATGCGCAAGCCAAGGA-CTGGCTCGGTCCCCCTTGCATGTTGTCGATCCTACTGCTAC
66 AGGCAGAATGCACAAGCTGGGGATC-GGCCCGGTCCCCCCTACGTGCTGCCGATCCCGCTGCCAC
31092183 AACCCTCAGTTCGGTCCGATCTTAGACTG
130 AACCCTCAGTTC-GTCCGATCTTAGACTG
* * * * *
31092212 GGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCGTGCAGGCGTTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAG
* * ** *
31092277 AGGCATAATGCACAAGCTGGGGATCGGCTCGGTCCTCTTCTGCGTGCTGCC-ATCCCGCTGCCAC
66 AGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCC-CCCCTACGTGCTGCCGATCCCGCTGCCAC
* * **
31092341 AACCCTC-GATTCGACTGGGGCTTAGACAT-
130 AACCCTCAG-TTCGTC-CGATCTTAGAC-TG
* * * * * * *
31092370 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCAGGCGCTCAGTCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAG
* * * *
31092435 AGGCAGAATACGCAAGCCT-GGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGCTACCAC
66 AGGCAGAATGCACAAG-CTGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCCGCTGCCAC
* **
31092499 AACCCTCAGTCTAGTTTGATCTTAGACTG
130 AACCCTCAGT-TCGTCCGATCTTAGACTG
*
31092528 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GAACGCTCAGCCGACCAGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAG-GCGCTCAGCCGACCAGA
*
31092592 GAGGCAGGATGCACAAGC-GGGGATCG
65 GAGGCAGAATGCACAAGCTGGGGATCG
31092618 AACGGGTGGT
Statistics
Matches: 326, Mismatches: 68, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
157 25 0.08
158 285 0.87
159 16 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAG
AGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCCGCTGCCACA
ACCCTCAGTTCGTCCGATCTTAGACTG
Found at i:31093675 original size:158 final size:158
Alignment explanation
Indices: 31093240--31093703 Score: 533
Period size: 158 Copynumber: 2.9 Consensus size: 158
31093230 ACTCCGTATG
* * * *
31093240 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTG-AGGGCGCTCAG
1 CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCA-GGCGCTCAG
* * * * *
31093304 CCGGTCAGAGAGGCAGAATGTGCAAGCCGGGGATTGGCCCGGTCCCCCCTACATGCTGTCGATCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCC
* *
31093369 TGCTGCCGCAACCCTTGGTCCAGTCTGAT
130 TGCTGCCGCAACCCTCGGTCCAGGCTGAT
* * * * *
31093398 CTTAGAC-TCAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGC-GGCGTTGAG
1 CTTAGACAT-AGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGCGCTCAG
* * * * *
31093461 CCGGCCGGAGAGGCACAATGCGCAAGCCAGGGATTGGCCCAGTCCCCCTCTGCGTGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCC-CTACGTGCTGTCGATC
* * *
31093526 CCGCTGCCACAACCCTCGGTCC-GGCTGGGGT
129 CTGCTGCCGCAACCCTCGGTCCAGGCT--GAT
* *
31093557 -TTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGCGCTCAGC
* * ** * ** *
31093621 TGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCTACCCTACGTGCTGCCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
*
31093686 ACTGCCGCAACCCTCGGT
131 GCTGCCGCAACCCTCGGT
31093704 TCGGTATGAA
Statistics
Matches: 253, Mismatches: 46, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
157 53 0.21
158 153 0.60
159 47 0.19
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCAGGCTGAT
Found at i:31093765 original size:26 final size:26
Alignment explanation
Indices: 31093714--31093766 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31093704 TCGGTATGAA
* *
31093714 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31093740 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31093766 C
1 C
31093767 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31094485 original size:26 final size:26
Alignment explanation
Indices: 31094447--31094499 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31094437 GGCTCAAAAT
31094447 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31094473 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
31094499 C
1 C
31094500 CTAAAGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31094828 original size:159 final size:157
Alignment explanation
Indices: 31094472--31094973 Score: 405
Period size: 159 Copynumber: 3.2 Consensus size: 157
31094462 AACTTCGTAT
* *
31094472 GCTTAGACATGGAATGAACTTCGTATGCCTAAAGCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
31094537 CAGGCCAGAGAGGTAGAATATGCAAGCCGGGGATCAACTCGATCCCCCCTGCGTGCTGTCGATCC
65 CAGGCCAGAGAGGCAGAATATACAAGCCAGGGATCAACTCGATCCCCCCTGCGTGCCGCCGATCC
* ** *
31094602 TGCAGCCACAACCCTCGATCTGGTCTGA
130 CGCAGCCACAACCCTCGATCCAGTCGGA
* * * * *
31094630 TCTTTGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCAC-CA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCACTC-
* * * *
31094693 AG-ACGGTC-GAAGAGGCATAATGA-ACAAGCCAGGGATCGAC-CTGGTCCCCCTCTGCGTGCCG
63 AGCA-GGCCAG-AGAGGCAGAAT-ATACAAGCCAGGGATCAACTC-GATCCCCC-CTGCGTGCCG
* * *
31094754 CCGGTCCCGCTGCCACAACCCTCGATCCAG-CAGGG
123 CCGATCCCGCAGCCACAACCCTCGATCCAGTC-GGA
* * *
31094789 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-GACGTGCGGGCACTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAG-CGTGCGGGCACTCA
* * ** ** * * ** * *
31094853 GCCGACTGGAGAGGCAGAATGCACTAGCCGGGGATCGGCTCGGT-CCCCCTGCGT-CCTGTCGAT
64 GCAGGCCAGAGAGGCAGAATATACAAGCCAGGGATCAACTCGATCCCCCCTGCGTGCC-GCCGAT
* * * * *
31094916 CCTGCAGCCACAACCTTCGGTTCAGTCCGA
128 CCCGCAGCCACAACCCTCGATCCAGTCGGA
*
31094946 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31094974 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 52, Indels: 39
0.75 0.14 0.11
Matches are distributed among these distances:
156 3 0.01
157 63 0.23
158 90 0.33
159 114 0.42
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCACTCAGC
AGGCCAGAGAGGCAGAATATACAAGCCAGGGATCAACTCGATCCCCCCTGCGTGCCGCCGATCCC
GCAGCCACAACCCTCGATCCAGTCGGA
Found at i:31094998 original size:26 final size:26
Alignment explanation
Indices: 31094947--31094999 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31094937 TCAGTCCGAT
*
31094947 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31094973 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
31094999 C
1 C
31095000 CCAAGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31095732 original size:159 final size:157
Alignment explanation
Indices: 31095352--31095749 Score: 399
Period size: 159 Copynumber: 2.5 Consensus size: 157
31095342 AACATATGCT
* *
31095352 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCG
* * ** * * **
31095417 ACTGGAGAGGCAGAGTGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGCGCATCGATCCTGCT
66 ACTAGAGAGGCAGAATGTGCAAGCCAAGGATCGACCCGATCCCCCCTATGCGCATCGATCCCACT
* ** * *
31095482 GTCGCAACCCTCGGTCCGATCCAATCT
131 GCCAAAACCCTCGGTCCGATCCAAGCA
* ** * *
31095509 TAGAC-TGGGAATGAACT-ATGTATGCCTAAATCAACCCACGAAACGAGCATGCAGGTGCTGAGC
1 TAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
* * * * *
31095572 CGGCTAGAGAGGCATAATGTGCAAGCCAAGGATCGACCCGGT-CCCCCTATGCATGCTGTCGGTC
64 CGACTAGAGAGGCAGAATGTGCAAGCCAAGGATCGACCCGATCCCCCCTATGC--GC-ATCGATC
***
31095636 CCACTGCCAAAACCCTCGGTCCGA-CTGGGGCA
126 CCACTGCCAAAACCCTCGGTCCGATC-CAAGCA
* * * *
31095668 TAGACATGGAATGAACTCCTTATGCCTACGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCG
** *
31095733 ACCGGAGAGGTAGAATG
66 ACTAGAGAGGCAGAATG
31095750 CGAAATCCAG
Statistics
Matches: 191, Mismatches: 42, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
156 10 0.05
157 87 0.46
158 3 0.02
159 89 0.47
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCG
ACTAGAGAGGCAGAATGTGCAAGCCAAGGATCGACCCGATCCCCCCTATGCGCATCGATCCCACT
GCCAAAACCCTCGGTCCGATCCAAGCA
Found at i:31095853 original size:26 final size:26
Alignment explanation
Indices: 31095824--31095876 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31095814 CCGATCTGAT
31095824 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
31095850 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
31095876 C
1 C
31095877 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:31096585 original size:26 final size:26
Alignment explanation
Indices: 31096545--31096597 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31096535 GGCTCAAAAT
31096545 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
31096571 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
31096597 C
1 C
31096598 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:31097450 original size:26 final size:26
Alignment explanation
Indices: 31097413--31097463 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
31097403 TGATCCGATC
* *
31097413 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAACGAACTCCGTATGG
31097439 TTAGACAT-GGAACGAACTCCGTATG
1 TTAGAC-TGGGAACGAACTCCGTATG
31097464 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAACGAACTCCGTATGG
Found at i:31098448 original size:323 final size:315
Alignment explanation
Indices: 31097752--31098575 Score: 981
Period size: 323 Copynumber: 2.6 Consensus size: 315
31097742 AACTCCGTAT
* ** * *
31097752 GCTTAGACATCGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * * *
31097817 CTGGTCGGAGAGGCAGAATACGTAAGCTGGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCC
66 CCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* * * * *
31097882 TACTACCGCAACCATCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * * * *
31097947 CCCACGAAACAAGTGTGCGGGCGTTGAGCTGGCCAGAGAGGCACAATGCGCAAGCAGGGATGGGC
196 CCCACGAAACAAGCGTGCGGGCGCTGAGCCGGCCAGAGAGGCACAATGCGCAAGCAGCGATGGCC
* * * * *
31098012 CGGTCTCCCTCTACCTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCTGGCTGGG
261 CGGTCTCCCTCTACATGCTGCCGGTCCCACTGCCACAACCCTCAGTCCGACTGGG
* *
31098067 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCTTGCGGGCGC-CTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTC-A
* * * * * *
31098131 GCCGACCGAAAAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGGTATCGATC
65 GCCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATC
*
31098196 CTGCTGCCACAACCCTCGGTCCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATA
130 CTGCTGCCGCAACCCTCGGT-C--T--GATCCGATCTTAGACTGGGAATGAACTCCGTATGCATA
* * ** *
31098261 AGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGATC-GA-ATGGGCATAATGCGCAAGTCG
190 AGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGGCCAGAGA--GGCACAATGCGCAAG-C-
* * * * *
31098324 AGCGATCGGCCCAGT-TCCCCTCTGCATGCTGCCGGTCCCATTGCCACTACCCTCGGTCCGACTG
251 AGCGAT-GGCCCGGTCT-CCCTCTACATGCTGCCGGTCCCACTGCCACAACCCTCAGTCCGACTG
31098388 GG
314 GG
* *
31098390 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * ** * **
31098455 TCGATCGGAGAGGTAGAATGCACAAGCTGGGGATCGACCCGGTTCCCTTTGCATGCTGCCGATCC
66 CCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* * * *
31098520 TGCTGTCGCAACCCTCAGTCTGATCCGATCCTAGATTGGGAATGAACTCCGTATGC
131 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
31098576 TTAGACTGGG
Statistics
Matches: 428, Mismatches: 68, Indels: 23
0.82 0.13 0.04
Matches are distributed among these distances:
314 1 0.00
315 124 0.29
316 1 0.00
318 35 0.08
319 2 0.00
320 84 0.20
321 1 0.00
322 7 0.02
323 172 0.40
324 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCACGAAACAAGCGTGCGGGCGCTGAGCCGGCCAGAGAGGCACAATGCGCAAGCAGCGATGGCC
CGGTCTCCCTCTACATGCTGCCGGTCCCACTGCCACAACCCTCAGTCCGACTGGG
Found at i:31098568 original size:158 final size:157
Alignment explanation
Indices: 31097763--31098575 Score: 609
Period size: 158 Copynumber: 5.1 Consensus size: 157
31097753 CTTAGACATC
* * * * * *
31097763 GAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCACTCAGCTGGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GATCGGAGA
* * * * * * * * * *
31097828 GGCAGAATACGTAAGCTGGGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTACTACCGCAA
65 GGCAGAATGCGCAAGCTGGGGATCGACCCGGTTCCCTCTGCATGCTGTCGATCCTGCTGCCACAA
* * *
31097893 CCATCGGTCTGGTCCGATCTTAGACTGG
130 CCCTCGGTCTGATCCGATCTTAGAATGG
* * * * * ** *
31097921 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGTTGAGCTGGCCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GATCGGAGA
* * ** * * * *
31097986 GGCACAATGCGCAAGC-AGGGAT-GGGCCGGTCTCCCTCTACCTGCTGTCGGTCCCGCTGCCACA
65 GGCAGAATGCGCAAGCTGGGGATCGACCCGGT-TCCCTCTGCATGCTGTCGATCCTGCTGCCACA
* * * **
31098049 ACCCTCAGTCTG-GCTGGGGCTTAGACAT-G
129 ACCCTCGGTCTGATC-CGATCTTAGA-ATGG
* * * * * *
31098078 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCTTGCGGGCGC-CTAGCCGACCGAAA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-AG-CGATCGGAG
* * * * * * * *
31098142 AGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGGTATCGATCCTGCTGCCACA
64 AGGCAGAATGCGCAAGCTGGGGATCGACCCGGTTCCCTCTGCATGCTGTCGATCCTGCTGCCACA
*
31098207 ACCCTCGGTCCGGTCCGATCCGATCTTAGACTGG
129 ACCCTCGGT-C--T--GATCCGATCTTAGAATGG
* * * * *
31098241 GAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGATCGAATG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGATCGGA-G
* * * * * * ***
31098306 -GGCATAATGCGCAAG-TCGAGCGATCGGCCCAGTTCCCCTCTGCATGCTGCCGGTCCCATTGCC
64 AGGCAGAATGCGCAAGCT-G-GGGATCGACCCGGTT-CCCTCTGCATGCTGTCGATCCTGCTGCC
* * * **
31098369 ACTACCCTCGGTCCGA-CTGGGGCTTAGACAT-G
126 ACAACCCTCGGTCTGATC-CGATCTTAGA-ATGG
* * *
31098401 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGTCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGATCGGAGA
* * * * * *
31098466 GGTAGAATGCACAAGCTGGGGATCGACCCGGTTCCCTTTGCATGCTGCCGATCCTGCTGTCGCAA
65 GGCAGAATGCGCAAGCTGGGGATCGACCCGGTTCCCTCTGCATGCTGTCGATCCTGCTGCCACAA
* * *
31098531 CCCTCAGTCTGATCCGATCCTAGATTGG
130 CCCTCGGTCTGATCCGATCTTAGAATGG
31098559 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
31098576 TTAGACTGGG
Statistics
Matches: 499, Mismatches: 131, Indels: 50
0.73 0.19 0.07
Matches are distributed among these distances:
156 6 0.01
157 110 0.22
158 162 0.32
159 21 0.04
160 77 0.15
161 3 0.01
162 1 0.00
163 77 0.15
164 12 0.02
165 30 0.06
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGATCGGAGAG
GCAGAATGCGCAAGCTGGGGATCGACCCGGTTCCCTCTGCATGCTGTCGATCCTGCTGCCACAAC
CCTCGGTCTGATCCGATCTTAGAATGG
Found at i:31098580 original size:26 final size:26
Alignment explanation
Indices: 31098551--31098601 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31098541 GATCCGATCC
*
31098551 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
31098577 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
31098602 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:31098930 original size:26 final size:26
Alignment explanation
Indices: 31098901--31098953 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31098891 CCAGATTGAT
31098901 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
31098927 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31098953 C
1 C
31098954 CTAACCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31099018 original size:352 final size:341
Alignment explanation
Indices: 31098231--31099143 Score: 912
Period size: 352 Copynumber: 2.6 Consensus size: 341
31098221 CCGATCCGAT
* * *
31098231 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
31098296 C-GATCGA-ATGGGCATAATGCGCAAG-TCGAGCGATCGGCCCAGTTCCCCTCTGCATGCTGCCG
66 CGGCT-GAGA--GGCATAATGCGCAAGCT-G-GGGATCGGCCC-GATCCCCTCTGCGTGCTGTC-
* * * ** *
31098358 GTCC-CATTGCCACTACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
124 GACCTCACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAA
* * * * * * * * *
31098422 GCCAACCCACGAAACGGGCGTGCGGGCACTCAGTCGATCGGAGAGGTAGAATGCACAAGCTGGGG
189 GCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCCACCGAAGAGGCAGAATGCACAAGCCGAGG
* * * * *
31098487 ATCGACCCGGTTCCCTTTGCATGCTGCCGATCCTGCTGTCGCAACCCTCAGTCTGATCCGATCCT
254 ATCGACCCGGTCCCCCTTACATGCTGCAGATCCTGCTGTCGCAACCCTCAGTCAGATCCGATCCT
*
31098552 AGATTGGGAATGAACTCCGTATG
319 AGACTGGGAATGAACTCCGTATG
* ** **
31098575 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
31098640 CGGCCTGAGAGGCATAATGTGCAAGCTGGGGATCAGCCCGATCCCCTGCTGCGTGCTGTCGACCT
66 CGG-CTGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCT-CTGCGTGCTGTCGACCT
* *
31098705 CGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGAAATGTAATGAACTCCCTATGCCTAAGCCAA
129 CACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
* ** *
31098770 CCCACGAAATGAGCGTGTGGGTGCTCAGCCCACCGAAGAGGCAGAATGCACAAGCCGAGGATCGG
194 CCCACGAAATGAGCGTGCGGGCACTCAGCCCACCGAAGAGGCAGAATGCACAAGCCGAGGATCGA
* * * *
31098835 CCCGGTCCCCCTTACTTGCTGTAGATCTTGTTGCTTGTCTTGCCGTAACCCTC-GATCCAGAT-T
259 CCCGGTCCCCCTTACATGCTGCAGATC---CTGC-TGTC--G-C--AACCCTCAG-T-CAGATCC
*
31098898 GATCTTAGACTGGGAATGAACTCCGTATG
313 GATCCTAGACTGGGAATGAACTCCGTATG
** *
31098927 CTTAGACAT-GGAATGAACTTCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
31098991 CCGGCTGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCC-AGTCCCCCCTTGGGTGCTGTCGAT
65 CCGGCT-GAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGA-TCCCCTC-TGCGTGCTGTCGA-
* * * *** * * *
31099055 CCT-ACTGTCGCAACCCTCGGTCCTGTCT-AATCTTAG-ATTGGGAATGAACTCCGTATGCGTAA
126 CCTCACTGCCACAACCCTCGGTCCGGT-TGGGGCTTAGAAAT-GGAATGAACTCCCTATGCCTAA
* * *
31099117 GTCAACCCACAAAATGAGCGTGAGGGC
189 GCCAACCCACGAAATGAGCGTGCGGGC
31099144 GTTGAGCCAG
Statistics
Matches: 469, Mismatches: 76, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
342 10 0.02
343 150 0.32
344 73 0.16
345 4 0.01
346 5 0.01
347 4 0.01
349 1 0.00
350 1 0.00
351 7 0.01
352 205 0.44
353 9 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (341 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCTGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGACCTCA
CTGCCACAACCCTCGGTCCGGTTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAATGAGCGTGCGGGCACTCAGCCCACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACC
CGGTCCCCCTTACATGCTGCAGATCCTGCTGTCGCAACCCTCAGTCAGATCCGATCCTAGACTGG
GAATGAACTCCGTATG
Found at i:31100099 original size:26 final size:26
Alignment explanation
Indices: 31100070--31100122 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31100060 CTGGTCCAAT
* *
31100070 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAAATCCGTATG
31100096 CTTAGACATGGAATGAAATCCGTATG
1 CTTAGACATGGAATGAAATCCGTATG
31100122 C
1 C
31100123 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:31100602 original size:159 final size:159
Alignment explanation
Indices: 31100249--31100602 Score: 351
Period size: 159 Copynumber: 2.2 Consensus size: 159
31100239 ACCCTTAGTC
* * * *
31100249 CGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
1 CGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG
* * * **
31100314 GCACTGAGCCCACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGTCTGGTCCCCCTCTGTGTGC
66 GCACTCAGCCCACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGTCTAGTCCCCCTCTGCATGC
** * *
31100379 TGTTGGTCCCGCTGCCACAACCATCAGTT
131 TGCCGATCCCACTGCCACAACCATCAGTT
* * ** ** * *
31100408 C-GACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGC
1 CGGTC-CGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
* **
31100471 AAGGCGCTCAGCCGGCC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGT-TCAGTCCCCC-CTG
64 -AGGCACTCAGCCCACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGTCT-AGTCCCCCTCTG
* * ** *
31100533 CATGCTGCCGATCCTACTGTCGGAACCCTC-GATT
126 CATGCTGCCGATCCCACTGCCACAACCATCAG-TT
31100567 CGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 CGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
31100603 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 34, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
158 4 0.03
159 99 0.65
160 50 0.33
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
CGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG
GCACTCAGCCCACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGTCTAGTCCCCCTCTGCATGC
TGCCGATCCCACTGCCACAACCATCAGTT
Found at i:31100612 original size:26 final size:26
Alignment explanation
Indices: 31100576--31100628 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31100566 TCGGTCCGAT
*
31100576 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31100602 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31100628 C
1 C
31100629 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.