Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 338 of 402
Found at i:31102203 original size:25 final size:26
Alignment explanation
Indices: 31102166--31102217 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
31102156 CCGATCCGAT
31102166 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
31102191 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31102217 C
1 C
31102218 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31102699 original size:26 final size:26
Alignment explanation
Indices: 31102670--31102720 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
31102660 CTGGTCTGAT
31102670 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
*
31102696 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
31102721 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATA
Found at i:31103420 original size:26 final size:26
Alignment explanation
Indices: 31103391--31103460 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
31103381 TCTTACACTG
31103391 GGAATGAACTCCGTATGCTTAGACAA
1 GGAATGAACTCCGTATGCTTAGACAA
*
31103417 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAA
31103443 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
31103461 CTAAACCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAA
Found at i:31104197 original size:26 final size:26
Alignment explanation
Indices: 31104151--31104219 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
31104141 TCTTACACTG
31104151 GGAATGAACT-CGTATGCTTAGACAA
1 GGAATGAACTCCGTATGCTTAGACAA
*
31104176 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAA
31104202 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
31104220 CTAAGCCAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
25 10 0.24
26 32 0.76
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAA
Found at i:31104401 original size:26 final size:26
Alignment explanation
Indices: 31104363--31104415 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31104353 TTGATCCAAT
31104363 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31104389 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31104415 C
1 C
31104416 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31104643 original size:157 final size:156
Alignment explanation
Indices: 31104389--31104962 Score: 494
Period size: 159 Copynumber: 3.6 Consensus size: 156
31104379 ACTCCGTATG
*
31104389 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGTGCTCAG
* * ** * * * *
31104453 CTGGTCGGAGAGGCAGAATGTGCAAGCCAGGGATTGGCTCGGTCCCCCCACGTGCTGTCGATCCT
64 CCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCCCGGTCCCCCCACGTGCTATCGATCCT
31104518 GCTCCTACAACCCTCGGTCCGATCCGAT
129 GCTCCTACAACCCTCGGTCCGATCCGAT
* * * * *
31104546 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTTACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-TGCTCAGC
* * * * ** * *
31104611 CGACCGGAGAGGCATAAGGCACAAGTCGGGGATCGGCCCGGTCCACCTCTGCATGCTATCGGTCC
65 CGGCCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCCCGGTCC-CC-CCACGTGCTATCGATCC
* * * ** *
31104676 CGCTACC-ACAACCCTTGGTCCGGCTGGGGT
128 TGCT-CCTACAACCCTCGGTCC-GATCCGAT
* * * * *
31104706 -TGAGACATA-GAATGAACTCCCTATGCTTAAGCCAACCCACGAAATG-G-GTGAACGGACGCTC
1 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG--CGG-TGCTC
* * * * *
31104767 AGTCGGCCGGAGAGGTAGAATGCATACGTCGGGGATTGGCCCGGTCCCCCCTATGTGCTATCGAT
62 AGCCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCCCGGTCCCCCC-ACGTGCTATCGAT
* * * * *
31104832 CCTGTTGCTACAACCCTCGGTCTGGTCCAAT
126 CCTGCTCCTACAACCCTCGGTCCGATCCGAT
* * * * * *
31104863 CTTAGATTGGGAATGAACTCCGTATGCCTAAGACAATCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGTGCTCAGC
* * * * * *
31104928 CGACCAGAGAGGTAGGATGCGCAAGCCGGGGATTG
65 CGGCCGGAGAGGCAGAATGCACAAGTCGGGGATTG
31104963 AACAGGTGGT
Statistics
Matches: 322, Mismatches: 79, Indels: 31
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 96 0.30
158 103 0.32
159 111 0.34
160 10 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGCTCAGCC
GGCCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCCCGGTCCCCCCACGTGCTATCGATCCTGC
TCCTACAACCCTCGGTCCGATCCGAT
Found at i:31111320 original size:26 final size:26
Alignment explanation
Indices: 31111291--31111343 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31111281 CCAATCCGAT
31111291 CTTAGAAT-GGGAATGAACTCCGTATG
1 CTTAGAATAGGG-ATGAACTCCGTATG
*
31111317 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGAATAGGGATGAACTCCGTATG
31111343 C
1 C
31111344 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGGATGAACTCCGTATG
Found at i:31111699 original size:26 final size:26
Alignment explanation
Indices: 31111670--31111722 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31111660 CCGGTTTGAT
31111670 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
31111696 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31111722 C
1 C
31111723 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31112052 original size:159 final size:157
Alignment explanation
Indices: 31111695--31112156 Score: 385
Period size: 159 Copynumber: 2.9 Consensus size: 157
31111685 AACTCCGTAT
* *
31111695 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAA
* * ** ** * *
31111760 TTGGCCAGAAAGGCAGAATGCGCAAGCGGGGGATCGATTCAATCCCCCCTACGTGCTATCGATCC
66 CTGGCCAGAAAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCCCCTACCTGCTACCGATCC
*
31111825 TCTGCCGTAACCCTCGGTCTAGTCTAA
131 TCTGCCGTAACCCTCGGTCTAGGCTAA
* * * * *** *
31111852 TCTTAGAC-TAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCA
* * * * ** * *
31111916 GCTGGCCAGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGGTCCCCTTCTGCCTGCTACCGAT
65 ACTGGCCAGAAAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCC-CCTACCTGCTACCGAT
* * *
31111981 CC-CGTTGCCGTAACCCTTGGTC-CGGCTAGG
129 CCTC--TGCCGTAACCCTCGGTCTAGGCTA-A
* * * ** *
31112011 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAA
* * * ** ** ** **
31112076 CCGGTC-GAAGAGGCAGAATGCGCAAGCTGGGGATC-AGCCCTGTCCCCCCTATGTGCTGTCGAT
66 CTGGCCAGAA-AGGCAGAATGCACAAGCCAGGGATCGA-CCCAATCCCCCCTACCTGCTACCGAT
*
31112139 CCTGCTGCCGGAACCCTC
129 CCT-CTGCCGTAACCCTC
31112157 AGTCCGGTCT
Statistics
Matches: 239, Mismatches: 56, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 89 0.37
158 43 0.18
159 104 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAA
CTGGCCAGAAAGGCAGAATGCACAAGCCAGGGATCGACCCAATCCCCCCTACCTGCTACCGATCC
TCTGCCGTAACCCTCGGTCTAGGCTAA
Found at i:31112221 original size:26 final size:26
Alignment explanation
Indices: 31112170--31112222 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31112160 CCGGTCTGAT
*
31112170 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
31112196 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
31112222 C
1 C
31112223 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:31112236 original size:343 final size:342
Alignment explanation
Indices: 31111865--31112616 Score: 952
Period size: 343 Copynumber: 2.2 Consensus size: 342
31111855 TAGACTAGAA
* *
31111865 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGAGCTGGCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTAAGCTGACCAGAGAGG
* * * * * * ** * **
31111930 CATAATGCACAAGCCAGGGATCGGCCCGGTCCCCTTCTGCCTGCTACCGATCCCGTTGCCGTAAC
66 CATAATGCACAAGCCAAGGACCGGCCCGATCCCCCTCTACCTGCTACAGATCCCACTACCACAAC
* * *
31111995 CCTTGGTCCGGCTAGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
131 CCTCGATCCGGCT-GGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
** * * * * *
31112059 GGCATG-TGAGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCTGTCCCC
195 GGCATGCTG-GCAATCAGCCGATCGAAGAGACAGAATGCACAAGCCGGGGATCAGCCCGGTCCCC
** * * * * *
31112123 CCTATGTGCTGTCGATCCTGCTGCCGGAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAAC
259 CCTACATGCTATCGATCCTACTACCGCAACCCTC-GTCCGATCTGATCTTAGACTAGGAATGAAC
* *
31112188 TTCATATGCTTAGACTGGGG
323 TCCATATGCTTAGACAGGGG
* * *
31112208 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGCACTAAG-TCGACCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTAAGCT-GACCAGAGAG
* * * *
31112272 GCATAATGCGCAAGCCAAGGACCGGCCCGATCCCCCTCTACGTGCTGCAGGTCCCACTACCACAA
65 GCATAATGCACAAGCCAAGGACCGGCCCGATCCCCCTCTACCTGCTACAGATCCCACTACCACAA
*
31112337 CCCTCGATCCGGCTGGAGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACG
130 CCCTCGATCCGGCTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
** * * *
31112402 GGTTTGCTGGCAATCAGCCGATCGGAGAGACAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCC
195 GGCATGCTGGCAATCAGCCGATCGAAGAGACAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCC
* * *
31112467 CTGCATGCTATCGATCCTACTATCGCAACCCTCGTCCGATCTGATCTTAGACTGGGAATGAACTC
260 CTACATGCTATCGATCCTACTACCGCAACCCTCGTCCGATCTGATCTTAGACTAGGAATGAACTC
*
31112532 CGTATGCTTAGACAGGGG
325 CATATGCTTAGACAGGGG
* * * * * *
31112550 ATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCTGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTAAGCTGACCAGAGAGG
31112615 CA
66 CA
31112617 GGATGCGTAA
Statistics
Matches: 347, Mismatches: 58, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
342 104 0.30
343 241 0.69
344 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (342 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTAAGCTGACCAGAGAGG
CATAATGCACAAGCCAAGGACCGGCCCGATCCCCCTCTACCTGCTACAGATCCCACTACCACAAC
CCTCGATCCGGCTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GCATGCTGGCAATCAGCCGATCGAAGAGACAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCC
TACATGCTATCGATCCTACTACCGCAACCCTCGTCCGATCTGATCTTAGACTAGGAATGAACTCC
ATATGCTTAGACAGGGG
Found at i:31112541 original size:26 final size:26
Alignment explanation
Indices: 31112512--31112564 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31112502 CCGATCTGAT
* *
31112512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTACGTATG
*
31112538 CTTAGACAGGGGATGAACTACGTATG
1 CTTAGACAGGGAATGAACTACGTATG
31112564 C
1 C
31112565 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTACGTATG
Found at i:31113548 original size:159 final size:157
Alignment explanation
Indices: 31113244--31113786 Score: 606
Period size: 159 Copynumber: 3.4 Consensus size: 157
31113234 ATGGCTTGAA
* **
31113244 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAATTGAGCGTGCGGGCGCTCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
31113309 GCCGGTC-AGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGA
66 GCCGGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGT-CCCCCCTGCGTGCTGTCGA
* ** *
31113373 ACCTTTTGTTGTAACCCTCAGTCCGATCTG
129 TCCTGCTGTCGTAACCCTCAGTCCG-TCTG
* * * * * ** * *
31113403 ATCTTAGATTAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGATCGTTGA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
31113468 GCCGGTCGAAGAGGCATAATGCACAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGTTGCCGGT
66 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGAT
* * ** *
31113533 CCCGCTGCCACAACCCTCAGTCCGGCTGG
130 CCTGCTGTCGTAACCCTCAGTCCGTCT-G
** * * *
31113562 GGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATC-AATCGGGCGTGCGGGCGCT
1 ATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCGCT
* * *
31113625 CAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGA
64 CAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGA
* * *
31113690 TCCTGCTATCGTAACCCTCAGTCTGGTCCG
129 TCCTGCTGTCGTAACCCTCAGTC-CGTCTG
* * *
31113720 ATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
31113785 GC
66 GC
31113787 TGACCAGAGA
Statistics
Matches: 308, Mismatches: 68, Indels: 17
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 92 0.30
159 214 0.69
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
CTGCTGTCGTAACCCTCAGTCCGTCTG
Found at i:31114810 original size:26 final size:26
Alignment explanation
Indices: 31114766--31114874 Score: 137
Period size: 26 Copynumber: 4.0 Consensus size: 26
31114756 CCGATCCTAT
* * *
31114766 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
* *
31114792 CTTAGACTGGGGATAAACTCCGTACGGGCG
1 CTTAGACTGGGGATGAACTCCGTA----TG
31114822 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
31114848 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
31114874 C
1 C
31114875 CTAAGTCAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 48 0.67
30 24 0.33
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:31114852 original size:56 final size:56
Alignment explanation
Indices: 31114766--31114871 Score: 176
Period size: 56 Copynumber: 1.9 Consensus size: 56
31114756 CCGATCCTAT
*
31114766 CTTAGACCGGGAATGAACTCTGTATGCTTAGACTGGGGATAAACTCCGTACGGGCG
1 CTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCGTACGGGCG
* * *
31114822 CTTAGACTGGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
1 CTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCGTA
31114872 TGCCTAAGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (56 bp):
CTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCGTACGGGCG
Found at i:31115294 original size:26 final size:26
Alignment explanation
Indices: 31115256--31115321 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 26
31115246 CCGGAGAGGC
*
31115256 TGAACTCTGTATGCTTAGATTG-GGAA
1 TGAACTCCGTATGCTTAGATTGTGG-A
*
31115282 TGAACTCCATATGCTTAGATTGTGGA
1 TGAACTCCGTATGCTTAGATTGTGGA
31115308 TGAACTCCGTATGC
1 TGAACTCCGTATGC
31115322 CTAAGCCAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 34 0.94
27 2 0.06
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (26 bp):
TGAACTCCGTATGCTTAGATTGTGGA
Found at i:31115746 original size:158 final size:157
Alignment explanation
Indices: 31115458--31115980 Score: 443
Period size: 158 Copynumber: 3.3 Consensus size: 157
31115448 CCTGCTGCCA
* *
31115458 CAACCCTCGGTTCGA-CTGGGA-CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCAC
1 CAACCCTCGGTCCGATCT--GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** * * * * ** ** *
31115520 AAAACGAGCATGCGGGTGCTCAGTCGGCCGGAGAGGCAAAATGTGCAAGCCAAGGA-CTGGCCCG
63 AAAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATC-AGCCCG
* *
31115584 GTCCCCCCTGTGTGCTGTCGATCCTATTGCTG
127 GTCCCCCCTGCGTGCTG-CGATCCTGTTGCTG
* * * * **
31115616 CAACCTTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
* * * *
31115681 ACGAGCGTTCGGGCAC-CGAGCCGACCGAAGAGGCATAATGCGCAAGTCGGGGATC-GACCCGGT
66 ACGAGCGTGCGGGCACTC-AGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAG-CCCGGT
* * **
31115744 CCCTCTCTGCGTACTGCCGATCCTGTTGCCA
129 CCC-CCCTGCGTGCTG-CGATCCTGTTGCTG
* ** *
31115775 CAACCCTCGGTCCG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACA
1 CAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACA
* * * ** * * *
31115838 AAATGGGTGTGCGGGTGCTCAGCCGACCGGAGAGGTAGAATTCACAAGCCGGGGATCAGCCCGGT
64 AAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGT
* * *
31115903 CCCCCTTGCGTGCTGCAGATCTTGCTG-TCG
129 CCCCCCTGCGTGCTGC-GATCCTGTTGCT-G
* *
31115933 CAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
31115981 TTAGACTGGG
Statistics
Matches: 288, Mismatches: 62, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
157 7 0.02
158 154 0.53
159 124 0.43
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
ACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCC
CCCCTGCGTGCTGCGATCCTGTTGCTG
Found at i:31115983 original size:26 final size:26
Alignment explanation
Indices: 31115954--31116006 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31115944 CCAATCCGAT
31115954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31115980 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31116006 C
1 C
31116007 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31116714 original size:26 final size:26
Alignment explanation
Indices: 31116677--31116728 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31116667 GCTCAAACTA
31116677 TTAGACTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
*
31116703 TTAGAC-ATGGAATGAACTCCGTATGC
1 TTAGACTA-GGAATGAACTCCATATGC
31116729 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:31117738 original size:159 final size:157
Alignment explanation
Indices: 31117428--31117938 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 157
31117418 CTGCCGGTCT
* * **
31117428 TGCTACCACAACCCTCGGTCCGGCT-GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCACAACCCTCGGTCC-GCTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
31117492 ACCCACGAATCGAGCGTGTGGGCGGTTAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCG
65 ACCCACGAAACGAGTGTGTGGGCGCTT-GCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCG
* * * *
31117557 GCCTGGTCCCCCCCTGCATGCTGTCGATCC
129 GCCCGGTCTCCCTCT-CGTGCTGTCGATCC
* * *
31117587 TGCTGCCACAACCCTTGGTCCGCTCTGATCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCA
1 TGCTGCCACAACCCTCGGTCCGCTCTGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * * * *
31117651 ACCCACGAAACGAGTGTGTGGGCGCTGTGTTGGCCAGAGAGGCATAATGCACAAGCTGGGGATCG
65 ACCCACGAAACGAGTGTGTGGGCGCT-TGCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCG
* * *
31117716 GCCCGATCTCCCTCTATGTGCTG-CCAGTCC
129 GCCCGGTCTCCCTCT-CGTGCTGTCGA-TCC
* * * ** *
31117746 CGCTGCCACAACCCTCGGTCTGGCT-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
1 TGCTGCCACAACCCTCGGTC-CGCTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
31117810 ACCCATGAAACGGGTGTGTGGGTGCTCAGACT-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
65 ACCCACGAAACGAGTGTGTGGGCGCT-TG-CTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATC
* * * *
31117874 GGCCCGGTCCTCCCTC-CGTCCTATTGATCT
128 GGCCCGGT-CTCCCTCTCGTGCTGTCGATCC
* *
31117904 TGCTGCCGCAACCCTCGGTCCAG-TCTAATCTTAGA
1 TGCTGCCACAACCCTCGGTCC-GCTCTGATCTTAGA
31117939 TTCAGAATGA
Statistics
Matches: 282, Mismatches: 59, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 37 0.13
159 231 0.82
160 13 0.05
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (157 bp):
TGCTGCCACAACCCTCGGTCCGCTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGTGTGTGGGCGCTTGCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC
CCGGTCTCCCTCTCGTGCTGTCGATCC
Found at i:31119094 original size:130 final size:130
Alignment explanation
Indices: 31118861--31119117 Score: 399
Period size: 130 Copynumber: 2.0 Consensus size: 130
31118851 GAATGAACTC
* * *
31118861 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGTGGCAGAATGC
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTAGACCGGAGAGGCAGAATGC
* * * * * *
31118926 GCAAGTCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGCCAATTCTGTTGCTGGTCCTGCTACCCA
66 GCAAGCCGGGGATCGACCCGGTCCCCCTTACGTGCTGCCAATCCTGCTACTGGTCCTGCTACCCA
*
31118991 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTAGACCGGAGAGGCAGAATGT
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTAGACCGGAGAGGCAGAATGC
*
31119056 GCAAGCCGGGGATCGACCCGGTCCCCAC-TACGTGCTGCCGATCCTGCTACTGGTCCTGCTAC
66 GCAAGCCGGGGATCGACCCGGTCCCC-CTTACGTGCTGCCAATCCTGCTACTGGTCCTGCTAC
31119118 AACAACACTC
Statistics
Matches: 115, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
130 114 0.99
131 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (130 bp):
CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTAGACCGGAGAGGCAGAATGC
GCAAGCCGGGGATCGACCCGGTCCCCCTTACGTGCTGCCAATCCTGCTACTGGTCCTGCTACCCA
Found at i:31119173 original size:26 final size:26
Alignment explanation
Indices: 31119141--31119193 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31119131 TCGATATGAT
*
31119141 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31119167 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31119193 C
1 C
31119194 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31119664 original size:16 final size:16
Alignment explanation
Indices: 31119643--31119675 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
31119633 GGTTCGATCT
31119643 TAGACTGGGAATGAAC
1 TAGACTGGGAATGAAC
*
31119659 TAGACTGGGGATGAAC
1 TAGACTGGGAATGAAC
31119675 T
1 T
31119676 CTGTATGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.21
Consensus pattern (16 bp):
TAGACTGGGAATGAAC
Found at i:31119862 original size:26 final size:26
Alignment explanation
Indices: 31119824--31119879 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
31119814 CCGATTCGAT
*
31119824 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31119850 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31119876 CTTA
1 CTTA
31119880 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31121166 original size:26 final size:26
Alignment explanation
Indices: 31121126--31121177 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31121116 CGATCTAATG
31121126 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
* *
31121152 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
31121178 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:31122312 original size:185 final size:184
Alignment explanation
Indices: 31122024--31122420 Score: 571
Period size: 185 Copynumber: 2.2 Consensus size: 184
31122014 CCCTCGGTTT
* * **
31122024 GGTCCAATCTTAGATTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACTCTGTATGCCTAA
1 GGTCCAATCTTAGATTGGGAATGAACTCAGTATGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * *
31122089 GCCAACCAATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGGGAGGCAGAATGCACAAGTCGGGG
66 GCCAACCAACGAAATAAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATACACAAGTCGGGG
* * * * *
31122154 ACCGACCTGGTCCCCCCCTGA-GTGCTGTCAATCCTGCTGCTGTAACCCTTGGTGC
131 ACCAACCTGGTCCCCCCCT-ACGTACT-TCAATCCTGCTACCGTAACCCTTGGTCC
* *
31122209 GGTCCGATCTTAGATTGGGAATGAGCTCAGTATGCTTAGACATGGAATGAACTCCATATGCCTAA
1 GGTCCAATCTTAGATTGGGAATGAACTCAGTATGCTTAGACATGGAATGAACTCCATATGCCTAA
* * *
31122274 GCCAACCCACGAAATAAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCAGAATACGCAAGTCGGGG
66 GCCAACCAACGAAATAAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATACACAAGTCGGGG
* *
31122339 ATCAACCTGGTCCCCTCCTACGTACTTCAATCCTGCTACCGTAACCCTTGGTCC
131 ACCAACCTGGTCCCCCCCTACGTACTTCAATCCTGCTACCGTAACCCTTGGTCC
* *
31122393 AGTCTAATCTTAGATTGGGAATGAACTC
1 GGTCCAATCTTAGATTGGGAATGAACTC
31122421 CATATGCCTA
Statistics
Matches: 187, Mismatches: 24, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
184 50 0.27
185 137 0.73
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
GGTCCAATCTTAGATTGGGAATGAACTCAGTATGCTTAGACATGGAATGAACTCCATATGCCTAA
GCCAACCAACGAAATAAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATACACAAGTCGGGG
ACCAACCTGGTCCCCCCCTACGTACTTCAATCCTGCTACCGTAACCCTTGGTCC
Found at i:31123677 original size:26 final size:26
Alignment explanation
Indices: 31123639--31123691 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31123629 GGCTCAAAAT
31123639 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31123665 CTTAGAC-ACGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
31123691 C
1 C
31123692 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31123873 original size:26 final size:26
Alignment explanation
Indices: 31123835--31123887 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31123825 CTGGTCTGAT
31123835 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31123861 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
31123887 C
1 C
31123888 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31124183 original size:159 final size:159
Alignment explanation
Indices: 31123860--31124421 Score: 440
Period size: 159 Copynumber: 3.5 Consensus size: 159
31123850 AACTCCGTAT
* * * *
31123860 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAA-ATGAGCGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAT--GCATACGGGCGCTG
* * * * ** ** * * **
31123923 AGTCGACCGGAGAGGTAGAATGTGCAAGCCAAGGATCGGCCTGATCCCCC-CT-TATGTGCTGTT
64 AGTCGGCCAGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCA--TGCTGCC
* ** ** * *
31123986 GATCCTACTATCGTAACCCTC-AGTCCGGTCT-GA
127 GATCCCACTGCCACAACCCTCGA-TCC-GACTGGG
* * * * * *
31124019 TCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCATCCCACGAAATGA-GCATACGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-CATGCATACGGGCGCTG
* * * ** *
31124082 AG-CTGGTCGGAGAGGCATAATGCACAAGCCGTGGATCGGCCCGATCCCCCTCTGTGTGCTGCCT
64 AGTC-GGCCAGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCG
* * *
31124146 ATGCCACTGCCCCAACCTTCGATCCGACTGGG
128 ATCCCACTGCCACAACCCTCGATCCGACTGGG
* * *
31124178 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACATGCATGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACATGCATACGGGCGCTGAG
* * * * *
31124243 TCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGGTC
66 TCGGCCAGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGATC
* * *
31124308 CCGCTGCCACAACCCTCGGTCTGACTGGG
131 CCACTGCCACAACCCTCGATCCGACTGGG
* * * ** * * *
31124337 GCTTAGACATGGAATGAACTCCCTCTGGCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACATGCATACGGGCGCTGAG
** *
31124402 TCGGCTGGAGAGGCAAAATG
66 TCGGCCAGAGAGGCATAATG
31124422 TGAAAGTCAA
Statistics
Matches: 324, Mismatches: 67, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
158 6 0.02
159 308 0.95
160 8 0.02
161 1 0.00
162 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACATGCATACGGGCGCTGAG
TCGGCCAGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGATC
CCACTGCCACAACCCTCGATCCGACTGGG
Found at i:31124525 original size:26 final size:26
Alignment explanation
Indices: 31124496--31124548 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31124486 CCAGTGCGAT
31124496 CTTAGACCAGGAATGAACTCCATATG
1 CTTAGACCAGGAATGAACTCCATATG
* * *
31124522 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
31124548 C
1 C
31124549 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:31125280 original size:26 final size:26
Alignment explanation
Indices: 31125229--31125282 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
31125219 TGGCTCAAAA
* * *
31125229 GCTTAGACTGGGAATTATCTCTGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
31125255 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
31125281 GC
1 GC
31125283 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:31125771 original size:26 final size:26
Alignment explanation
Indices: 31125730--31125782 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31125720 CCGGTCCGAT
*
31125730 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
31125756 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
31125782 C
1 C
31125783 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:31126513 original size:26 final size:26
Alignment explanation
Indices: 31126462--31126515 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
31126452 TGGCTCAAAA
* * *
31126462 GCTTAGACTGGGAATTATCTCTGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
31126488 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
31126514 GC
1 GC
31126516 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:31127200 original size:26 final size:26
Alignment explanation
Indices: 31127171--31127223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31127161 CCGACTCGAT
*
31127171 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
31127197 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31127223 C
1 C
31127224 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31127712 original size:26 final size:26
Alignment explanation
Indices: 31127671--31127723 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31127661 TTGGTCTAAT
31127671 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31127697 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
31127723 C
1 C
31127724 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31127832 original size:708 final size:705
Alignment explanation
Indices: 31126463--31127744 Score: 1556
Period size: 708 Copynumber: 1.8 Consensus size: 705
31126453 GGCTCAAAAG
* * *
31126463 CTTAGACTGGGAATTATCTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* *
31126528 ACAAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCC
66 ACAAAACGAGCGTGCGGGCACTCAGCCGATCAGAGAGACAGAATGCGCAAGCCGGGGACCGGCCC
* * *
31126593 AGTCCCGCCCTACGTGCTGTCGATCCTGCTATCGCAAATCTCAGTCCGATCCGATCTTAGACTAG
131 AGTCCCGCCCTACGTGCTGTCGATCCTGCTATAGCAAACCTCAGTCCGATCCGATCTAAGACTAG
* * * *
31126658 GAATAAACTCCGTATGCATAAGTCAACCCACGAAATGAGCTTACGGGCATTGAGCTGGCCAAAGA
196 GAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCACTGAGCCGGCCAAAGA
* * * * * * * * * * *
31126723 TGCAAAATGTGTAAGCCGGGGATAGGCCCAGTTCCCCTCTGCGTGTGTTCGGTCTCGTTGCCACA
261 GGCAAAATGCGCAAGCCAGGGATACGCCCAGATCCCCTCTGCATGTGTCCGGTCCCGCTACCACA
* * * *
31126788 ACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCTAACCCACGAAGCG
326 ACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACA
* * *
31126853 GGCGTGCGGCACTCAGCCGGCTGAAGTGGCAGAATACGCAAGCCGAGGATCGGCCCGGTACCCCT
391 GGCGTGCGGCACTCAGCCGGCTGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATACCCCT
*
31126918 GCGTGCTACCAATCCTGCTGCCACAACCCTCGGTCTGGTTCAATCTTACACTAGGAATGAACTCC
456 GCGTGCTACCAATCCTGCTACCACAACCCTCGGTCTGGTTCAATCTTACACTAGGAATGAACTCC
* *
31126983 GTAATCTTAAACTGGGATGAACTCTGTATGCCTAGGTCAACCCACAAAACGAGCATTTGGGCACT
521 GTAATCTTAAACTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA-CATTTGGGCACT
* * ** * * * *
31127048 CAGCCAACCGGAGAGGCCGGCTGGAGAGACATAATTCGTAAGCCGAGGATCACCCCGATCCCCCT
585 CAGCCAACCGGAAAGGCAGAATGCAAAGACAGAATTCG--AGCCGAGGATCACCCCGATCCCCCG
* *
31127113 TTACGTGCTGCCGATCCTGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTCGAT
648 GTACCTGCTGCCGATCCTGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTCGAT
* * *
31127171 CTTAGACTTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCGAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
** * * * * *
31127236 ATGAAACGAGCGTGCGGGCGCTTAGCCGATCAGAGAGGCAGAATGCGTAAGCCGGGGACCGGCTC
66 ACAAAACGAGCGTGCGGGCACTCAGCCGATCAGAGAGACAGAATGCGCAAGCCGGGGACCGGCCC
* * * * *
31127301 GGTCCC-CCCTACGTGCTGTCGATCCTGCTGTAGCAACCCTC-GTCTGATCC-AGTCTAAGACTG
131 AGTCCCGCCCTACGTGCTGTCGATCCTGCTATAGCAAACCTCAGTCCGATCCGA-TCTAAGACTA
* * * * * * * * *
31127363 GGAGTGAACTCTGTGTGCCTCAGTCAACCCACTAAACGAGCATACGGGCACTGAGCCGGTCGAAG
195 GGAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCACTGAGCCGGCCAAAG
* * * * *
31127428 AGGCATAATGCGCAAGCTAGGGATCCGTCC-GATCCCCTTTTGCATGCTG-CCGGTCCCGCTACC
260 AGGCAAAATGCGCAAGCCAGGGATACGCCCAGATCCCC-TCTGCATG-TGTCCGGTCCCGCTACC
31127491 ACAACCCTCGGTCTCG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
323 ACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACG
* * * * * *
31127555 AAACAGGTGTGCAGGCACTCAGCTGG-TCGAAGAGGTAGAATGCGTAAGCCGAGGATCGATCCGA
386 AAACAGGCGTGC-GGCACTCAGCCGGCT-GAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGA
* * ** * * * * * *
31127619 TCCCCCATGCGTGCTGCTGATCCTGCTATCGCAACCCTTGGTTTGG-TCTAATCTTAGACTGGGA
449 TACCCC-TGCGTGCTACCAATCCTGCTACCACAACCCTCGGTCTGGTTC-AATCTTACACTAGGA
* * *
31127683 ATGAACTCCGT-ATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGA
512 ATGAACTCCGTAAT-CTTAAACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
31127745 ATGTTTGGTA
Statistics
Matches: 482, Mismatches: 81, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
705 7 0.01
706 143 0.30
707 65 0.13
708 170 0.35
709 62 0.13
710 35 0.07
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (705 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACAAAACGAGCGTGCGGGCACTCAGCCGATCAGAGAGACAGAATGCGCAAGCCGGGGACCGGCCC
AGTCCCGCCCTACGTGCTGTCGATCCTGCTATAGCAAACCTCAGTCCGATCCGATCTAAGACTAG
GAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCACTGAGCCGGCCAAAGA
GGCAAAATGCGCAAGCCAGGGATACGCCCAGATCCCCTCTGCATGTGTCCGGTCCCGCTACCACA
ACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACA
GGCGTGCGGCACTCAGCCGGCTGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATACCCCT
GCGTGCTACCAATCCTGCTACCACAACCCTCGGTCTGGTTCAATCTTACACTAGGAATGAACTCC
GTAATCTTAAACTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGACATTTGGGCACTC
AGCCAACCGGAAAGGCAGAATGCAAAGACAGAATTCGAGCCGAGGATCACCCCGATCCCCCGGTA
CCTGCTGCCGATCCTGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTCGAT
Found at i:31128035 original size:26 final size:26
Alignment explanation
Indices: 31127999--31128051 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31127989 CCGGTCTGAT
*
31127999 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31128025 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31128051 C
1 C
31128052 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31128760 original size:26 final size:26
Alignment explanation
Indices: 31128722--31128772 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31128712 GGCTCAAACT
31128722 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31128748 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
31128773 TCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31129483 original size:26 final size:26
Alignment explanation
Indices: 31129432--31129484 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31129422 CCGATCCGAT
**
31129432 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
31129458 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
31129484 C
1 C
31129485 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:31129827 original size:26 final size:26
Alignment explanation
Indices: 31129790--31129842 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31129780 GGCTCAAACT
*
31129790 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31129816 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31129842 C
1 C
31129843 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31130184 original size:26 final size:26
Alignment explanation
Indices: 31130133--31130185 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31130123 CCGGTCTGAT
*
31130133 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31130159 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
31130185 C
1 C
31130186 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31130877 original size:26 final size:26
Alignment explanation
Indices: 31130848--31130900 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31130838 CCGGTCTGAT
* *
31130848 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
31130874 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
31130900 C
1 C
31130901 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:31131747 original size:26 final size:26
Alignment explanation
Indices: 31131701--31131753 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31131691 CTAGTCTGAT
*
31131701 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
31131727 CTTAGACTGGGGAT-AACCTCTATATG
1 CTTAGACTGGGAATGAA-CTCTATATG
31131753 C
1 C
31131754 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:31132683 original size:159 final size:157
Alignment explanation
Indices: 31132327--31132734 Score: 407
Period size: 159 Copynumber: 2.6 Consensus size: 157
31132317 AACTCCGTAT
* *
31132327 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTC-
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-G-GCACT
* * * *
31132390 G-GTCGGTCGAAATGGTAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTGCGTGCCGTCGA
63 GAGCCGGCCGAGA-GGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTGCGTGCCGTCGA
* * *
31132454 TCCTACTGCAGTAACCCTCGATGCGGTCCGA
127 TCCCACTGCAGCAACCCTCGATCCGGTCCGA
* * * * *
31132485 TCTTAGA-TTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGA
* * * * * * * *
31132549 GCCGACCAGAGAGGCATAATGCGCAAGCCGGGGATCTACCCGGTCCCTCTCTGTGTGCTGTCGGT
65 GCCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCC-CCCTGCGTGCCGTCGAT
* * * *
31132614 CCCGCTGCCA-CAACCCTCGGTCCGG-CTGGG
128 CCCACTG-CAGCAACCCTCGATCCGGTC-CGA
* *
31132644 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTGA
*
31132708 GCCGGCCGGAGAGGCAGAATGGGCAAG
65 GCCGGCC-GAGAGGCAGAATGCGCAAG
31132735 TCGGTGATTG
Statistics
Matches: 203, Mismatches: 37, Indels: 19
0.78 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 84 0.41
159 110 0.54
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTGAG
CCGGCCGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTGCGTGCCGTCGATCCC
ACTGCAGCAACCCTCGATCCGGTCCGA
Found at i:31133183 original size:26 final size:26
Alignment explanation
Indices: 31133154--31133206 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31133144 CCGGTCCAAT
31133154 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
31133180 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
31133206 C
1 C
31133207 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:31133255 original size:340 final size:333
Alignment explanation
Indices: 31132626--31133283 Score: 731
Period size: 340 Copynumber: 1.9 Consensus size: 333
31132616 CGCTGCCACA
*
31132626 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
1 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * * *
31132691 GGACGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGGGCAAGTCGGTGATTGGCCCGATCCCC
66 GGACGTGCAGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCC
* * * *
31132756 CCTACGTTCTGTTGATCCTATTACCGCAACCCTCGGACTGGTCCGATCTTAGATCTGAATGAACT
131 CCTACGTGCTGCTGATCCTATTACCGCAACCCTCGGACCGGTCCAATCTTAGATCTGAATGAACT
** * * * *
31132821 CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGGGCGTGCAGGG
196 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGG
* * *
31132886 CGTTAGCGACCGGAGAGGCCGGACAGAGAGGCATAATACGCAAGCTGGGGATCAGCCCAGTCCCT
261 C--T-GC-ACC---GAGGCCAGACAGAGAGGCAGAATACGCAAGCTGGGGAGCAGCCCAGTCCCT
31132951 CTCTGCGTGCTGTCG
319 CTCTGCGTGCTGTCG
*
31132966 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-
1 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * * *
31133030 TGAGCGTGCAGGTGCTCAACCGG-CGGAGAGGCAGAATGCGTAAGTCGGGGATCGGTCCGGTCCC
66 GGA-CGTGCAGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCC
* * * *
31133094 TCCTGCGTGCTGCTGATCCTGCTACTGGTCCTACTGTTGCAACCCTCGGTCCGGTCCAATCTTAG
130 CCCTACGTGCTGCTGAT-C--CTA----T--TAC---CGCAACCCTCGGACCGGTCCAATCTTAG
31133159 A-CTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACG
183 ATCT--GAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * *
31133222 AAGCGAGCGTGC-GGGC-GC-TC-A-GTCAGTCAGAGAGGCAGAATGCGTAAGCTGGGGAGCAGC
245 AAACGAGCGTGCAGGGCTGCACCGAGGCCAGACAGAGAGGCAGAATACGCAAGCTGGGGAGCAGC
31133282 CC
310 CC
31133284 GATCCCCCCT
Statistics
Matches: 267, Mismatches: 35, Indels: 32
0.80 0.10 0.10
Matches are distributed among these distances:
339 50 0.19
340 113 0.42
341 1 0.00
342 3 0.01
345 1 0.00
346 1 0.00
347 2 0.01
348 3 0.01
350 2 0.01
351 29 0.11
352 61 0.23
353 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (333 bp):
ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GGACGTGCAGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCC
CCTACGTGCTGCTGATCCTATTACCGCAACCCTCGGACCGGTCCAATCTTAGATCTGAATGAACT
CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGG
CTGCACCGAGGCCAGACAGAGAGGCAGAATACGCAAGCTGGGGAGCAGCCCAGTCCCTCTCTGCG
TGCTGTCG
Found at i:31133354 original size:196 final size:195
Alignment explanation
Indices: 31132984--31133509 Score: 619
Period size: 196 Copynumber: 2.7 Consensus size: 195
31132974 TCCGACTGGG
* * *
31132984 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * *
31133049 CCGGCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGTCCGGTCCCTCCTGCGTGCTGCTGATCCT
66 CAGGCAGAGAGGCAGAATGCGTAAGTCGGGGAGCAGCCCGATCCCCCCTGCATGCTGCTGATCCT
* * *
31133114 GCTACTGGTCCTACTGTTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
131 CCTACTGGTCCTACTGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
*
31133179 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGCGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-
* *
31133244 TCAGTCAGAGAGGCAGAATGCGTAAG-CTGGGGAGCAGCCCGATCCCCCCTGCATGCT-CTCGAT
65 ACAGGCAGAGAGGCAGAATGCGTAAGTC-GGGGAGCAGCCCGATCCCCCCTGCATGCTGCT-GAT
* * * *
31133307 CTTCCTACTGGTCCTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
128 CCTCCTACTGGTCCTACTGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCA
31133372 TAT
193 TAT
* * * * * * * * *
31133375 GCTTAGACATCGAATGAACTCCATACGCCTAAGCCAGCTCATGAAACGAGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * * *
31133440 CCGACCG-GAAGGGCAGAATGCGCAAGTCGAGGACCGGCCCGATCCCCCCTGCGTGCT-ATGATC
66 CAGGCAGAG-A-GGCAGAATGCGTAAGTCGGGGAGCAGCCCGATCCCCCCTGCATGCTGCTGATC
*
31133503 CTGCTAC
129 CTCCTAC
31133510 CAAAACCCTC
Statistics
Matches: 283, Mismatches: 42, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
194 1 0.00
195 77 0.27
196 204 0.72
197 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CAGGCAGAGAGGCAGAATGCGTAAGTCGGGGAGCAGCCCGATCCCCCCTGCATGCTGCTGATCCT
CCTACTGGTCCTACTGTCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:31133710 original size:159 final size:157
Alignment explanation
Indices: 31133375--31133813 Score: 443
Period size: 159 Copynumber: 2.8 Consensus size: 157
31133365 AACTCCGTAT
* * * * * ** *
31133375 GCTTAGACATCGAATGAACTCCATACGCCTAAGCCAGCTCATGAAACGAGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * *
31133440 CCGACCGGA-AGGGCAGAATGCGCAAGTCGAGGACCGGCCCGATCCCCCCTGCGTGCTATGATCC
66 CCGGCCGGAGA-GGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCATGCTATGATCC
*
31133504 TGCTACCAAAACCCTCGATCTGGTCTAA
130 CGCTACCAAAACCCTCGATCTGGTCTAA
* ** * * *
31133532 TCTTAGAC-TGGGAATGAACTCTGTACACCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATACGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * * * * * *
31133596 GCTGGCCAGAGAGGCATAATACGCAAGTCGAGGATCGACCCGATTCCCCTCTGCATGCTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGA-TCCCCCCTGCATGCTAT-GAT
* **
31133661 CCCGCTACCACAACCCTCGATCTGG-CTGGG
128 CCCGCTACCAAAACCCTCGATCTGGTCT-AA
* * * * * *
31133691 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * *
31133756 CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTA
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCATGCTA
31133814 CCGATCCTAC
Statistics
Matches: 225, Mismatches: 51, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
156 1 0.00
157 83 0.37
158 30 0.13
159 110 0.49
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCATGCTATGATCCC
GCTACCAAAACCCTCGATCTGGTCTAA
Found at i:31135406 original size:26 final size:26
Alignment explanation
Indices: 31135377--31135426 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
31135367 ATCTGATCTT
31135377 AGACTGGGAATGAACTCT-GTATGCTC
1 AGACTGGGAATGAACT-TGGTATGCTC
*
31135403 AGACTGGGGATGAACTTGGTATGC
1 AGACTGGGAATGAACTTGGTATGC
31135427 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTTGGTATGCTC
Found at i:31136106 original size:26 final size:26
Alignment explanation
Indices: 31136067--31136118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31136057 TGGCTCAAAC
31136067 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
31136093 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
31136119 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:31137151 original size:26 final size:26
Alignment explanation
Indices: 31137109--31137161 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31137099 GACTCAAAAT
* *
31137109 CTTAGACTGGGACTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31137135 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31137161 C
1 C
31137162 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31137650 original size:26 final size:26
Alignment explanation
Indices: 31137609--31137660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31137599 CTGGACCGAT
31137609 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
31137635 CTTAGACTGTGG-ATGAACTCCGTATG
1 CTTAGACT-TGGAATGAACTCCGTATG
31137661 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:31137925 original size:171 final size:171
Alignment explanation
Indices: 31137647--31137970 Score: 411
Period size: 171 Copynumber: 1.9 Consensus size: 171
31137637 TAGACTGTGG
* * * *
31137647 ATGAACTCCGTATGTCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCAGACGGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCACCAGACGGGAGAGG
* * * *
31137712 CATAATGCGCAAGCCGGGGATCAGCGCGGTCCCCCTCTACGTGCTG-CTGATCCCACTGCCGGTC
66 CAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTC-GATCCCACTGCCGGTC
31137776 CTACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACAATGA
130 CTACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACAATGA
* * * *
31137818 ATGAACTCCGTATGCCTTAGCCAACCCACGAAATGAGCGTGGGGGCGCTCAACCGGTC-GGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC-ACCAGACGGGAGAG
* * * ** *
31137882 GCAGAGTGTGCAAGCCAGGGATCGGCCCGATCTCCCC-CTACGTGCTGTCGATCCTGCTGCTGGT
65 GCAGAATGCGCAAGCCAGGGATCAGCCCGATC-CCCCTCTACGTGCTGTCGATCCCACTGCCGGT
** *
31137946 CCTACTGTCGCAACCCTCGGTCCGG
129 CCTACTACCACAACCCTCGGTCCGG
31137971 TCTGATCTTA
Statistics
Matches: 129, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
171 120 0.93
172 9 0.07
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCACCAGACGGGAGAGG
CAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCACTGCCGGTCC
TACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACAATGA
Found at i:31137993 original size:171 final size:170
Alignment explanation
Indices: 31137647--31138007 Score: 397
Period size: 171 Copynumber: 2.1 Consensus size: 170
31137637 TAGACTGTGG
* * * *
31137647 ATGAACTCCGTATGTCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCAGACGGGAGAGG
1 ATGAACTCCGTATG-CTTAGCCAACCCACGAAATGAGCGTGCGGGCGCTCACCAGACGGGAGAGG
* * * *
31137712 CATAATGCGCAAGCCGGGGATCAGCGCGGTCCCCCTCTACGTGCTGCTGATCCCACTGCCGGTCC
65 CAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCTGATCCCACTGCCGGTCC
* *
31137777 TACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACAATGA
130 TACTACCACAACCCTCGGTCCGGCTGGAGCTTAGACAAGGA
* * *
31137818 ATGAACTCCGTATGCCTTAGCCAACCCACGAAATGAGCGTGGGGGCGCTCAACCGGTC-GGAGAG
1 ATGAACTCCGTATG-CTTAGCCAACCCACGAAATGAGCGTGCGGGCGCTC-ACCAGACGGGAGAG
* * * ** *
31137882 GCAGAGTGTGCAAGCCAGGGATCGGCCCGATCTCCCC-CTACGTGCTG-TCGATCCTGCTGCTGG
64 GCAGAATGCGCAAGCCAGGGATCAGCCCGATC-CCCCTCTACGTGCTGCT-GATCCCACTGCCGG
** * * * **
31137945 TCCTACTGTCGCAACCCTCGGTCCGGTCT-GATCTTATACTGGGA
127 TCCTACTACCACAACCCTCGGTCCGG-CTGGAGCTTAGACAAGGA
*
31137989 ATGAACTCTGTATGCTTAG
1 ATGAACTCCGTATGCTTAG
31138008 ACATGGAATG
Statistics
Matches: 158, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
170 6 0.04
171 142 0.90
172 10 0.06
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (170 bp):
ATGAACTCCGTATGCTTAGCCAACCCACGAAATGAGCGTGCGGGCGCTCACCAGACGGGAGAGGC
AGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCTGATCCCACTGCCGGTCCT
ACTACCACAACCCTCGGTCCGGCTGGAGCTTAGACAAGGA
Found at i:31138297 original size:159 final size:158
Alignment explanation
Indices: 31138003--31138505 Score: 550
Period size: 159 Copynumber: 3.2 Consensus size: 158
31137993 ACTCTGTATG
* * *
31138003 CTTAGACAT-GGAATGAACTCCGTATGCCTAACTCAACCAACGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
31138067 CCGACCGGAGAGGCAGAATGCACAAGTCGAGGACCGACCCGATCCCCGCT-TGCGTGCTATCGAT
65 CCGGTC-GAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCC-CTCTACGTGCTATCGAT
* *
31138131 CTTGCTGCCGCAACCCTCGGTTCGATCCGAT
128 CCTGCTGCCACAACCCTCGGTTCGATCCGAT
* * *
31138162 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
31138227 CGGTCAGAGAGGCATAATTTGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTACCGGTCC
66 CGGTC-GAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTATCGATCC
* * * * **
31138292 CGCTGCCACAACCCTCAGTTCG-GCTGGGG
130 TGCTGCCACAACCCTCGGTTCGATC-CGAT
*
31138321 CTTAGACAT-GGAATGAACT-CGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCG-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
31138384 GTCGGTCGAAGAGGTAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCC-CTACGTGCTGTCGAT
64 GCCGGTCG-AGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTATCGAT
* *
31138448 CCTACTGCCACAACCCTCGGTCCGATCCGAT
128 CCTGCTGCCACAACCCTCGGTTCGATCCGAT
* *
31138479 CTTAGACTGGGAATGAACTCCGCATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
31138506 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 53, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 60 0.21
159 220 0.78
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTATCGATCCT
GCTGCCACAACCCTCGGTTCGATCCGAT
Found at i:31138531 original size:26 final size:26
Alignment explanation
Indices: 31138479--31138531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31138469 CCGATCCGAT
*
31138479 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
31138505 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
31138531 C
1 C
31138532 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:31138845 original size:26 final size:26
Alignment explanation
Indices: 31138816--31138868 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31138806 CCGGTCTGAT
31138816 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31138842 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31138868 C
1 C
31138869 CTAGTCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31138955 original size:184 final size:184
Alignment explanation
Indices: 31138630--31138968 Score: 441
Period size: 184 Copynumber: 1.8 Consensus size: 184
31138620 GATTCAAGAC
*
31138630 ATCTTAGACTAGGAATGAAATCCATATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAAATCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
31138695 CCACGAAACGAGCGTACGGGCGCTAAGCCGACTGGAGAGGCAGAATGTGCAAGTCGGGGATCGGC
66 CCACGAAACGAGCGTACGGGCGCTAAGCAGACTGGAAAGGCAGAATGTGCAAGCCAGAGATCGGC
* *
31138760 TCGATCCCCTCTGCATGCTATCGATCTTGCTGCCGCAACCCTTGGTCCGGTCTG
131 CCGATCCCCTCTGCATGCTACCGATCTTGCTGCCGCAACCCTTGGTCCGGTCTG
* * * * *
31138814 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCT-AGTCAA
1 ATCTTAGACTAGGAATGAAATCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
31138877 CCTACGAAACGAGTGTACGGGGGCTCAGCTAGTC-GGAAAGGCATAATGTGTAAGCCAGAGATCG
65 CCCACGAAACGAGCGTACGGGCGCTAAGC-AGACTGGAAAGGCAGAATGTGCAAGCCAGAGATCG
*
31138941 GCCCGATCCCCCTCTGTATGCTACCGAT
129 GCCCGAT-CCCCTCTGCATGCTACCGAT
31138969 ACTGCTACCG
Statistics
Matches: 131, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
183 61 0.47
184 70 0.53
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (184 bp):
ATCTTAGACTAGGAATGAAATCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTACGGGCGCTAAGCAGACTGGAAAGGCAGAATGTGCAAGCCAGAGATCGGC
CCGATCCCCTCTGCATGCTACCGATCTTGCTGCCGCAACCCTTGGTCCGGTCTG
Found at i:31139411 original size:15 final size:15
Alignment explanation
Indices: 31139391--31139420 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
31139381 AACTCCGTAT
31139391 GCCTAAGTCAACCCA
1 GCCTAAGTCAACCCA
31139406 GCCTAAGTCAACCCA
1 GCCTAAGTCAACCCA
31139421 TGAAACGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.13, T:0.13
Consensus pattern (15 bp):
GCCTAAGTCAACCCA
Found at i:31139525 original size:173 final size:174
Alignment explanation
Indices: 31139231--31139764 Score: 569
Period size: 173 Copynumber: 3.0 Consensus size: 174
31139221 TAAACTTTGT
* * *
31139231 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGTGCA
1 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCA
* * * **
31139296 AGCCGAAGACTGGCCCCATCCCCCCTACGTGCTGTTGATCCTGCTGTAGCAACCCTCAGTCCGGT
66 AGCCGAAGACTGGCCCGATCCCCCCTACGTGCTGTCGATCCTGTTGCCGCAACCCTCAGTCCGGT
31139361 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
131 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
31139405 A-GCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGTTGGAGAGTG-AGAATGCGC
1 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAG-GCAGAATGCGC
* * *
31139468 AAGCCGATGA-TCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGTTGCCGTAACCCTC-GATCC
65 AAGCCGAAGACT-GGCCCGATCCCCCCTACGTGCTGTCGATCCTGTTGCCGCAACCCTCAG-TCC
** * * *
31139531 GGTCTGATCTTAGACTACGAATGAACTTCGTATGCTTAGACATGGAATGAACTCC
128 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT--A-A--G--TCAAC-CC
** * ** * *
31139586 GTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCG
1 --ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCG
* * * * * * * *
31139651 TAAGCCGAGGACTAGCCCGATCCCTCCAACGTGCTG-CTTATCCTGTAGCCACAACCCAT-AGGT
64 CAAGCCGAAGACTGGCCCGATCCCCCCTACGTGCTGTC-GATCCTGTTGCCGCAACCC-TCA-GT
31139714 -CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
126 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
31139762 ATG
1 ATG
31139765 AAACGAGCGT
Statistics
Matches: 297, Mismatches: 43, Indels: 40
0.78 0.11 0.11
Matches are distributed among these distances:
172 2 0.01
173 139 0.47
174 5 0.02
175 1 0.00
176 3 0.01
177 4 0.01
178 1 0.00
179 1 0.00
180 4 0.01
181 3 0.01
182 1 0.00
183 3 0.01
184 126 0.42
185 3 0.01
186 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (174 bp):
ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCA
AGCCGAAGACTGGCCCGATCCCCCCTACGTGCTGTCGATCCTGTTGCCGCAACCCTCAGTCCGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
Found at i:31140069 original size:26 final size:26
Alignment explanation
Indices: 31140028--31140080 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31140018 CCGGTTCGAT
*
31140028 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
31140054 CTTAGACTGGGGATGATCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31140080 C
1 C
31140081 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31140768 original size:26 final size:26
Alignment explanation
Indices: 31140729--31140780 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31140719 TGGCTCAAAA
31140729 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
31140755 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
31140781 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:31141272 original size:26 final size:26
Alignment explanation
Indices: 31141243--31141295 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31141233 CCAATTCGAT
*
31141243 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATAAACTCCATATG
*
31141269 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCATATG
31141295 C
1 C
31141296 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:31142844 original size:159 final size:157
Alignment explanation
Indices: 31142489--31142990 Score: 555
Period size: 159 Copynumber: 3.2 Consensus size: 157
31142479 AACACCGTGT
*
31142489 GCTTAGACAT-GGAATGAACTCCGTAT-CCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
31142552 G-TCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCCGGTCCCCCCTACGTGCTATCGA
65 GCT-GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGGTCCCCCCTACGTGCTACCGA
* * ** *
31142615 TCCTGCTGCTACAACCTTCAATCCGGTCTGT
128 TCCTGCTGCCACAACCCTCGGTCCGG-CTGA
* * * * * * * *
31142646 TCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
31142711 CTGGCCGAAGAGGCATAACGCGCAAGCCGGGGATCAGCCCGGTCACCCTCTATGTGCTACCGGTC
66 CTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTC-CCCCCTACGTGCTACCGATC
* * *
31142776 CCGTTGCCACAACCCTCGGTCCGGCTAGG
130 CTGCTGCCACAACCCTCGGTCCGGCT-GA
* *
31142805 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
31142869 ACCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATC
65 GCTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATC
* * *
31142934 CTGCTGTCGCAACCCTCGGTCCGATCTGA
130 CTGCTGCCACAACCCTCGGTCCG-GCTGA
* *
31142963 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
31142991 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 54, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 23 0.08
158 128 0.45
159 129 0.46
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTACCGATCC
TGCTGCCACAACCCTCGGTCCGGCTGA
Found at i:31143000 original size:26 final size:26
Alignment explanation
Indices: 31142964--31143016 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31142954 CCGATCTGAT
31142964 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31142990 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31143016 C
1 C
31143017 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31143762 original size:159 final size:157
Alignment explanation
Indices: 31143370--31143873 Score: 360
Period size: 159 Copynumber: 3.2 Consensus size: 157
31143360 AAGTCCGTAT
* * *
31143370 GCTTACACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAG
* * * * * *
31143435 TCGGCTGGAGAGGTAGAATGTGCAAGTCGGGGATCGACCTGACCCTCCCTACATGCTGTCGATCC
66 CCGGC-GGAGAGGGAGAATGTGCAAGCCAGGGATCGACCCGACCCTCCCTACATGCTGCCGATCC
** * *
31143500 TGCTACCGTAACCCTCGGTCCGGTTCAA
130 TGCTACCACAACCCTCAGTCCGGCTCAA
* * * * **
31143528 TCTTTGAC-TGGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGT--GGGCGC
1 GCTTAGACAT--GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-AG-GTGTGCGGGCGC
* ** * * ***
31143590 TGAGCCAACCGGAGAGGGATAATGTGCAAGCCAGGGATCTACCCGATCCC-CCTCTGTGTGCTGC
62 TCAGCC-GGCGGAGAGGGAGAATGTGCAAGCCAGGGATCGACCCGA-CCCTCC-CTACATGCTGC
* * * ***
31143654 CGGT-CTCGCTGCCACAACCCTCAGTCTGGCTGGG
124 CGATCCT-GCTACCACAACCCTCAGTCCGGCTCAA
* *
31143688 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAG
* * * * * * * ** *
31143753 CCGGTCGGAGAGGCAGAATGCGCAAGTC-GAGGAACAGTCTCGTCCC-CCCTATGTGCTGTCGAT
66 CCGG-CGGAGAGGGAGAATGTGCAAGCCAG-GGATC-GACCCGACCCTCCCTACATGCTGCCGAT
* * * *
31143816 CCTACTGCCACAACCCTCGGTCCGG-TCTGA
128 CCTGCTACCACAACCCTCAGTCCGGCTC-AA
* *
31143846 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
31143874 TTACACTGGG
Statistics
Matches: 267, Mismatches: 62, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
157 7 0.03
158 64 0.24
159 150 0.56
160 42 0.16
161 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTCAG
CCGGCGGAGAGGGAGAATGTGCAAGCCAGGGATCGACCCGACCCTCCCTACATGCTGCCGATCCT
GCTACCACAACCCTCAGTCCGGCTCAA
Found at i:31143876 original size:26 final size:26
Alignment explanation
Indices: 31143847--31143899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31143837 CCGGTCTGAT
*
31143847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
31143873 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
31143899 C
1 C
31143900 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31144585 original size:26 final size:26
Alignment explanation
Indices: 31144556--31144608 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
31144546 CTGATCCGAT
31144556 CTTAGACTG-GGAATGAAC-TCTGTATG
1 CTTAGACTGTGG-ATGAACTTC-GTATG
*
31144582 CTTAGATTGTGGATGAACTTCGTATG
1 CTTAGACTGTGGATGAACTTCGTATG
31144608 C
1 C
31144609 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGTGGATGAACTTCGTATG
Found at i:31144979 original size:185 final size:184
Alignment explanation
Indices: 31144765--31145135 Score: 512
Period size: 185 Copynumber: 2.0 Consensus size: 184
31144755 TCCGATTGGG
** * *
31144765 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
31144830 CCGATCGGAGAGGCAGAATACGCAAGCCGAGGATCAGCT-TGGTCCCCCATTACGTGCTGCCGAT
66 CCAATCAGAGAGGCAGAATACGCAAGCCGAGGATC-GCTCCGGTCCCCC-CTACGTGCTGCCGAT
* * *
31144894 CCTGCTGCCGCAACCCTC-GATCCGGTCCGATCATAGACTGGGAATGAACTCCGTAT
129 CCTGCTACCACAACCCTCAG-TCCGATCCGATCATAGACTGGGAATGAACTCCGTAT
* *
31144950 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGACACGAGCGTGCAGGCGCTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
31145015 CCAATCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAATCAGAGAGGCAGAATACGCAAGCCGAGGATCGCTCCGGTCCCCCCTACGTGCTGCCGATCC
* *
31145080 TGTTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACCACAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCCGTAT
31145134 GC
1 GC
31145136 CTAAGTCAAC
Statistics
Matches: 163, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
184 65 0.40
185 98 0.60
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCAATCAGAGAGGCAGAATACGCAAGCCGAGGATCGCTCCGGTCCCCCCTACGTGCTGCCGATCC
TGCTACCACAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCCGTAT
Found at i:31145298 original size:159 final size:159
Alignment explanation
Indices: 31144950--31145452 Score: 595
Period size: 158 Copynumber: 3.2 Consensus size: 159
31144940 AACTCCGTAT
* *
31144950 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGACACGAGCGTGCAGGCGCTCG-
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-GA
* * * *
31145014 GCCAATCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATC
65 GCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
*
31145079 CTGTTACCACAACCCTCAGTCC-GATCCGA
130 CTGCTACCACAACCCTCAGTCCGGATCCGA
* * * *
31145108 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* ** * *
31145172 GCCGATCGGAGAGGCATAATGCATAAGCTGGGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGGT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * * *
31145237 CCCGCTACCACAACCCTCGGTCCGGCT-GGG
129 CCTGCTACCACAACCCTCAGTCCGGATCCGA
* * * * * * *
31145267 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * *
31145332 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTCACCCCTGCATGCTGCCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
*
31145397 TGCTGCCACAACCCTCAGTCC-GATCCGA
131 TGCTACCACAACCCTCAGTCCGGATCCGA
* *
31145425 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
31145453 TTAGACTGGA
Statistics
Matches: 287, Mismatches: 51, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
157 5 0.02
158 151 0.53
159 128 0.45
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCAGTCCGGATCCGA
Found at i:31145455 original size:26 final size:26
Alignment explanation
Indices: 31145426--31145478 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31145416 CCGATCCGAT
*
31145426 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCATATG
31145452 CTTAGACTGGAGATGAACTCCATATG
1 CTTAGACTGGAGATGAACTCCATATG
31145478 C
1 C
31145479 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCATATG
Found at i:31146109 original size:62 final size:62
Alignment explanation
Indices: 31146032--31146161 Score: 233
Period size: 62 Copynumber: 2.1 Consensus size: 62
31146022 AAAGGTTGAG
31146032 GCCCGCAGACCAGGTGTGCTGGCGGGTATCTGCGCACAAAGCCTAGCAAGCGAGTTTAGAAC
1 GCCCGCAGACCAGGTGTGCTGGCGGGTATCTGCGCACAAAGCCTAGCAAGCGAGTTTAGAAC
* * *
31146094 GCCCTCAGACCAGGTGTGCTGGCGGGTATCTGTGCACAAAGCCTAGCAAGCGAGTTTAGAAT
1 GCCCGCAGACCAGGTGTGCTGGCGGGTATCTGCGCACAAAGCCTAGCAAGCGAGTTTAGAAC
31146156 GCCCGC
1 GCCCGC
31146162 CCAACTTTCA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.23, C:0.28, G:0.32, T:0.18
Consensus pattern (62 bp):
GCCCGCAGACCAGGTGTGCTGGCGGGTATCTGCGCACAAAGCCTAGCAAGCGAGTTTAGAAC
Found at i:31149102 original size:16 final size:16
Alignment explanation
Indices: 31149081--31149113 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
31149071 CTAGAGACAG
31149081 GTGTTCGAGGTGTTAC
1 GTGTTCGAGGTGTTAC
31149097 GTGTTCGAGGTGTTAC
1 GTGTTCGAGGTGTTAC
31149113 G
1 G
31149114 GGCGCACAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.39, T:0.36
Consensus pattern (16 bp):
GTGTTCGAGGTGTTAC
Found at i:31151491 original size:26 final size:26
Alignment explanation
Indices: 31151455--31151507 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31151445 CCAGTCTGAT
*
31151455 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31151481 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31151507 C
1 C
31151508 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31158918 original size:26 final size:26
Alignment explanation
Indices: 31158866--31158918 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31158856 GGCTCAAAAT
**
31158866 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
31158892 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCACATG
31158918 C
1 C
31158919 CTCTGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:31159254 original size:159 final size:159
Alignment explanation
Indices: 31158891--31159387 Score: 497
Period size: 158 Copynumber: 3.1 Consensus size: 159
31158881 AACTCTGCAT
* ** *
31158891 GCTTAGACATGGAATGAACTCCATATGCCTCTGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
31158956 CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT-TACGTTCTATCGATC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTTCGATCGATC
** **
31159020 TTGCTGCCACAACCTTTGGTCCGGTCTGA
131 CCGCTGCCACAACCTCAGGTCCGGTCTGA
* * * * * * *
31159049 TCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGAGCTGAG
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
31159114 CCGACCGAAGAGGCATAACGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGTCGCT-GGT
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGT-TCGATCGAT
* *
31159178 CCCGCTGCCACAACCCTCAGTTCC-G-CTGGG
130 CCCGCTGCCACAA-CCTCAGGTCCGGTCT-GA
* * * * *
31159208 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
31159273 CCGACCGGAGAGGCAGAATGCATAAGTCGGGGATCGGCCCGGT-CCCCTCTGTGTGCTG-TCGAT
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTTC-GATCGAT
* * * **
31159336 CCTGCTGTCAGAACCCTCA-GTCCAATCTGA
130 CCCGCTGCCACAA-CCTCAGGTCCGGTCTGA
*
31159366 TCTTAGA-TTGGGAATGAACTCC
1 GCTTAGACTT-GGAATGAACTCC
31159388 GTACGGTTAA
Statistics
Matches: 276, Mismatches: 54, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 7 0.03
158 147 0.53
159 112 0.41
160 10 0.04
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTTCGATCGATC
CCGCTGCCACAACCTCAGGTCCGGTCTGA
Found at i:31159695 original size:171 final size:171
Alignment explanation
Indices: 31159405--31159721 Score: 397
Period size: 171 Copynumber: 1.9 Consensus size: 171
31159395 TAAACTGGGG
* * * * *
31159405 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCAAACGGGCGCTCAGCCGGCTGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCAAACGGGCGCTCAACCGACCGAAGAGG
* * *
31159470 CATAATGCGCAAGCCGGGGACTAGCCCGATCCCTCTCTGCATGCTGCTGATCCTGCTGCCGGTCC
66 CAGAATGCGCAAGACGGGGACTAGCCCGATCCCCCTCTGCATGCTGCTGATCCTGCTGCCGGTCC
31159535 TGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGA
131 TGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGA
** *** *
31159576 ATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCTGGCGCTCAACCGACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCAAACGGGCGCTCAACCGACCGAAGAGG
* * * * *
31159641 CAGAATGCGTAAGACGGGGA-TCGGCCTGGTCCCCC-CTTGCATGCTG-TCGATCCTGCTGCTGG
66 CAGAATGCGCAAGACGGGGACT-AGCCCGATCCCCCTC-TGCATGCTGCT-GATCCTGCTGCCGG
**
31159703 TCCTGCTACTGCAACCCTC
128 TCCTGCTACCACAACCCTC
31159722 GGTTCGGTCT
Statistics
Matches: 122, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
170 3 0.02
171 119 0.98
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCAAACGGGCGCTCAACCGACCGAAGAGG
CAGAATGCGCAAGACGGGGACTAGCCCGATCCCCCTCTGCATGCTGCTGATCCTGCTGCCGGTCC
TGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGA
Found at i:31159741 original size:171 final size:171
Alignment explanation
Indices: 31159405--31159761 Score: 391
Period size: 171 Copynumber: 2.1 Consensus size: 171
31159395 TAAACTGGGG
* * * * *
31159405 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCAAACGGGCGCTCAGCCGGCTGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCAAACGGGCGCTCAACCGACCGAAGAGG
* * *
31159470 CATAATGCGCAAGCCGGGGACTAGCCCGATCCCTCTCTGCATGCTGCTGATCCTGCTGCCGGTCC
66 CAGAATGCGCAAGACGGGGACTAGCCCGATCCCCCTCTGCATGCTGCTGATCCTGCTGCCGGTCC
*
31159535 TGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATG-GA
131 TGCTACCACAACCCTCAGTCCAGCTGGAGCTTAGAC-TGAGA
** *** *
31159576 ATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCTGGCGCTCAACCGACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCAAACGGGCGCTCAACCGACCGAAGAGG
* * * * *
31159641 CAGAATGCGTAAGACGGGGA-TCGGCCTGGTCCCCC-CTTGCATGCTG-TCGATCCTGCTGCTGG
66 CAGAATGCGCAAGACGGGGACT-AGCCCGATCCCCCTC-TGCATGCTGCT-GATCCTGCTGCCGG
** * * * *
31159703 TCCTGCTACTGCAACCCTCGGTTCGGTCT-GATCTTAGACTGAGA
128 TCCTGCTACCACAACCCTCAGTCCAG-CTGGAGCTTAGACTGAGA
*
31159747 ATGAACTCCATATGC
1 ATGAACTCCGTATGC
31159762 TTAGACATGG
Statistics
Matches: 154, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
170 5 0.03
171 147 0.95
172 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCAAACGGGCGCTCAACCGACCGAAGAGG
CAGAATGCGCAAGACGGGGACTAGCCCGATCCCCCTCTGCATGCTGCTGATCCTGCTGCCGGTCC
TGCTACCACAACCCTCAGTCCAGCTGGAGCTTAGACTGAGA
Found at i:31161324 original size:159 final size:158
Alignment explanation
Indices: 31160984--31161426 Score: 437
Period size: 159 Copynumber: 2.8 Consensus size: 158
31160974 CTGTATGCTC
* * * *
31160984 AGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTACGGACGCTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGACGCTAAGCCGA
* * * * * * **
31161049 CCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCTGATCCCCCCTGCATGCTGTCTATCCTGCT
66 CCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGATCCCCCCTGCATGCTGCCGATCCCACT
31161114 GCCACAACCCCCGGTCCGGTCTAATCTT
131 GCCACAACCCCCGGTCCGGTCTAATCTT
* * * * * *
31161142 AGA-GTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGTGTGCGGGA-GCTAAGCC
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAC-GGACGCTAAGCC
* * * * *
31161205 GACTGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCTCCCTCTGCGTGCTGCCGGTCCC
64 GACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGATC-CCCCCTGCATGCTGCCGATCCC
** *
31161270 ACTGCCACAACCCTTGGTTCGG-CT-ATGGCTT
128 ACTGCCACAACCCCCGGTCCGGTCTAAT--CTT
* * * ** *
31161301 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGG-CATTGAGCCG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAC-GGACGCTAAGCCG
* * * * * * * *
31161365 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
65 ACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGATCCCCCCTGCATGCTGCCGATCC
31161427 TGCTGTCGCA
Statistics
Matches: 230, Mismatches: 48, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 103 0.45
159 123 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGACGCTAAGCCGA
CCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGATCCCCCCTGCATGCTGCCGATCCCACT
GCCACAACCCCCGGTCCGGTCTAATCTT
Found at i:31161830 original size:171 final size:171
Alignment explanation
Indices: 31161480--31161843 Score: 382
Period size: 171 Copynumber: 2.1 Consensus size: 171
31161470 GAACTCTGTA
* *
31161480 AGCTTAGACCAGGG-ATGAACTCCGTACGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTC
1 AGCTTAGA-CTGGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTC
* * * * * * *
31161544 AGTCGTCCGGAGAGGCATAATGCATAAGTCGGGGACTAGCCCGATCCCTCTCTGCGTACTGCCGA
65 AGTCGACCGAAGAGGCAGAATGCACAAGTCGGGAACTAGCCCGATCCCCCTCTGCATACTGCCGA
* *
31161609 TCTCGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGCTGG
130 TCTCGCTGTCGATCCCGCTACCACAACCCTCAGTCCGGCTCG
* * * **
31161651 GGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
1 AGCTTAGAC-TGGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTC
* * * *
31161715 AGTCGACCGAAGAGGCAGAATGCGCAAGTCGGGAA-TCGGCCTGATCCCCC-CTTGCATGCTGCC
65 AGTCGACCGAAGAGGCAGAATGCACAAGTCGGGAACT-AGCCCGATCCCCCTC-TGCATACTGCC
* * * * *
31161778 GATC-CTGCTG-CTGGTCCTGCTACCGCAACTCTCGGTCCGG-TCCG
128 GATCTC-GCTGTC-GATCCCGCTACCACAACCCTCAGTCCGGCT-CG
*
31161822 ATCTTAGACTGGGAATGAACTC
1 AGCTTAGACTGGGAATGAACTC
31161844 ATATGCTTAG
Statistics
Matches: 158, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
170 9 0.06
171 149 0.94
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (171 bp):
AGCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCA
GTCGACCGAAGAGGCAGAATGCACAAGTCGGGAACTAGCCCGATCCCCCTCTGCATACTGCCGAT
CTCGCTGTCGATCCCGCTACCACAACCCTCAGTCCGGCTCG
Found at i:31161861 original size:25 final size:26
Alignment explanation
Indices: 31161824--31161878 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
31161814 CCGGTCCGAT
*
31161824 CTTAGACTGGGAATGAACT-CATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
31161849 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
31161875 CTTA
1 CTTA
31161879 TGCCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:31162263 original size:158 final size:158
Alignment explanation
Indices: 31161848--31162291 Score: 432
Period size: 158 Copynumber: 2.8 Consensus size: 158
31161838 GAACTCATAT
* * * * * *
31161848 GCTTAGACATGGAATAAACTCCGTATGCTTATGCCAACCCACGAAACGAGCTTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
31161913 CCGACCGGAGAGGCGGAATGCGCAAGCTGGGGATCGACCCGATCCCCC-CTACGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGC-GGGGATCGGCCCGATCCCCCTCTACGTGCTATCGATC
* * ** * **
31161977 CTGTTGTAGCAACCCTCGGTCTGGTTCGA
130 CCGCTACACCAACCCTCGGTCTGACTCGA
* * * * * *
31162006 TCTTAGACTAT-GAATGAAC-CCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTG
1 GCTTAGAC-ATGGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
31162069 AGCCGATCGGAGAGGCATAATGCACAAACCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGG
64 AGCCGACCGGAGAGGCAGAATGCGC-AAGCGGGGATCGGCCCGATCCCCCTCTACGTGCTATCGA
* * *
31162134 TCCCGCTACCCCAACCCTCGGTTTGACT-GG
128 TCCCGCTACACCAACCCTCGGTCTGACTCGA
* *
31162164 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
31162229 CGGGCCTGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGGTCCCCCTGT--GTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGATCCCCCTCTACGTGCTATCGATC
31162292 TTGTTACCGC
Statistics
Matches: 226, Mismatches: 53, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
156 10 0.04
157 6 0.03
158 172 0.76
159 38 0.17
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCGGGGATCGGCCCGATCCCCCTCTACGTGCTATCGATCC
CGCTACACCAACCCTCGGTCTGACTCGA
Found at i:31163070 original size:26 final size:26
Alignment explanation
Indices: 31163031--31163084 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
31163021 TGGCTCAAAA
31163031 GCTTAGACTGGGAATGAACTCCATAT
1 GCTTAGACTGGGAATGAACTCCATAT
*
31163057 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCATAT
31163083 GC
1 GC
31163085 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCATAT
Found at i:31163354 original size:158 final size:157
Alignment explanation
Indices: 31163058--31163558 Score: 566
Period size: 158 Copynumber: 3.2 Consensus size: 157
31163048 ACTCCATATG
** *
31163058 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGG-TGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCT-CTCAG
* * * * *
31163122 CC-AGCTGGATAGGTATAATGCGCAAGCCAGGGATCAGCTCGGTTCCCCCTGTGTGCTGTCGATC
65 CCGA-CCGGAAAGGCATAATGCGCAAGCCAGGGATCGGCTCGG-TCCCCCTGCGTGCTGTCGATC
*
31163186 CTGCTACCACAACCCTCAGT-TCGGTTCGAT
128 CTGCTGCCACAACCCTCAGTCT-GGTTCGAT
* * *
31163216 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCTCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCTCTCAG
* * * *
31163280 CCGACCGAAAAGGCATAATGCGTAAGCCAAGGATCGGCTCGGTCCCTCCTGCGTGCTGTCGGTCC
65 CCGACCGGAAAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTCCC-CCTGCGTGCTGTCGATCC
* * * **
31163345 CGCTGCCACAACCCTCGGTCTGGTTGGGG
129 TGCTGCCACAACCCTCAGTCTGGTTCGAT
* *
31163374 CTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCTCTCAG
* * * * * * * * *
31163438 CTGACCGGAGATGCAAAATGCGCAAGCCGGGGATCGCCCCGGTCCCCCCTGCGTGCTATCGATCT
65 CCGACCGGAAAGGCATAATGCGCAAGCCAGGGATCGGCTCGGT-CCCCCTGCGTGCTGTCGATCC
*
31163503 TGCTGCCGCAACCCTCAGTCTGG-TCTGAT
129 TGCTGCCACAACCCTCAGTCTGGTTC-GAT
31163532 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
31163559 TTAGACTAGG
Statistics
Matches: 287, Mismatches: 45, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
157 10 0.03
158 267 0.93
159 10 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCTCTCAGC
CGACCGGAAAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCAGTCTGGTTCGAT
Found at i:31163573 original size:26 final size:26
Alignment explanation
Indices: 31163532--31163584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31163522 CTGGTCTGAT
31163532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31163558 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
31163584 C
1 C
31163585 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31163768 original size:26 final size:26
Alignment explanation
Indices: 31163728--31163780 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31163718 CTGGTCTGAT
*
31163728 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
31163754 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
31163780 C
1 C
31163781 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:31164072 original size:157 final size:157
Alignment explanation
Indices: 31163753--31164195 Score: 500
Period size: 157 Copynumber: 2.8 Consensus size: 157
31163743 AACTTCGTAT
*
31163753 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
31163818 CCGGTCGGAGAGGCAGAATGCGCAAGTC-GGGATCGACCTGATCCCCCCTATGTGCTATCGATCC
66 CCGGTCGGAGAGGCACAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTGCGTGCTATCGATCC
* * * * **
31163882 TATTGTCGCAACCCTCGGTCTGGTCTGA
131 CACTGCCGCAA-CCTCGATCCAGTCTGA
* * * * * *
31163910 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCGTGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
31163974 GCTGGCCGGAGAGGCATAATGCACAAGTCGGGGATCGGCCTGGTCCCCCACTGCGTGCTATTGGT
65 GCCGGTCGGAGAGGCACAATGCGCAAGTCGGGGATCGACCTGGTCCCCC-CTGCGTGCTATCGAT
* * *
31164039 CCCGCTGCCTCAA-CTCGATCCAG-CTGGG
129 CCCACTGCCGCAACCTCGATCCAGTCT-GA
* * * * *
31164067 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
31164132 CCAGTCGGAGAGGCACAATGCGCAAG-CTGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATC
66 CCGGTCGGAGAGGCACAATGCGCAAGTC-GGGGATCGACCTGGTCCCCCCTGCGTGCTATCGATC
31164196 TTGCTACCGC
Statistics
Matches: 235, Mismatches: 45, Indels: 13
0.80 0.15 0.04
Matches are distributed among these distances:
156 18 0.08
157 180 0.77
158 18 0.08
159 19 0.08
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCACAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTGCGTGCTATCGATCC
CACTGCCGCAACCTCGATCCAGTCTGA
Found at i:31169588 original size:26 final size:26
Alignment explanation
Indices: 31169550--31169600 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31169540 CTCAAAATCT
31169550 TAGACTGAGAATGAACTCCGTATGCG
1 TAGACTGAGAATGAACTCCGTATGCG
31169576 TAGACATGA-AATGAACTCCGTATGC
1 TAGAC-TGAGAATGAACTCCGTATGC
31169601 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATGCG
Found at i:31170704 original size:26 final size:26
Alignment explanation
Indices: 31170675--31170726 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31170665 TCGGTCCGAT
*
31170675 CTTAGAC-TAGGAATTAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31170701 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31170727 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31171589 original size:26 final size:26
Alignment explanation
Indices: 31171547--31171599 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31171537 CCGGTCCAAT
31171547 CTTAGACTGAGGGTGAACACCATATG
1 CTTAGACTGAGGGTGAACACCATATG
* *
31171573 CTTAGACTG-GGGATGAACTCCGTATG
1 CTTAGACTGAGGG-TGAACACCATATG
31171599 C
1 C
31171600 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGGGTGAACACCATATG
Found at i:31171942 original size:26 final size:26
Alignment explanation
Indices: 31171913--31171965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31171903 CCAGTCCGAT
* * *
31171913 CTTAGACTTTGAATGAGCTCCGTATG
1 CTTACACTTGGAATGAACTCCGTATG
31171939 CTTACACTTGGAATGAACTCCGTATG
1 CTTACACTTGGAATGAACTCCGTATG
31171965 C
1 C
31171966 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTACACTTGGAATGAACTCCGTATG
Found at i:31172293 original size:158 final size:157
Alignment explanation
Indices: 31171947--31172302 Score: 380
Period size: 158 Copynumber: 2.2 Consensus size: 157
31171937 TGCTTACACT
* *
31171947 TGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGCGCACAGCCGATCGGA
1 TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCACAGCCGATCGGA
* * * * *
31172012 GAGCTAGAATGCACAAGCCGGGGATCGGCCTGATCACCTCCTGGATGCTATCGATCCTGTTGCCG
66 GAGCTA-AATGCACAAGCCGAGGATCGGCCCGATCACCCCCTGGATGCTATCGATCCTGCTGCCA
* * *
31172077 CAACCCTCGGTCTGATTCGATCTTAGAC
130 CAACCCTCGGTCCGACTCGACCTTAGAC
* * * **
31172105 TGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGATCGG
1 T-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCACAGCCGATCGG
* * * * *
31172170 AGAGGCGT-AATGCGCAAG-CTAGGATCGGCCCGGTC-CCCCACTGCG-TGCT-GCTGGTCCTGC
65 AGA-GC-TAAATGCACAAGCCGAGGATCGGCCCGATCACCCC-CTG-GATGCTATC-GATCCTGC
* * *
31172230 TGCCACAACCCTTGGTCCGACTGGGCCTTAGAC
125 TGCCACAACCCTCGGTCCGACTCGACCTTAGAC
* *
31172263 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 -TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
31172303 GACGTGTGGG
Statistics
Matches: 163, Mismatches: 28, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
157 4 0.02
158 86 0.53
159 70 0.43
160 2 0.01
161 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCACAGCCGATCGGA
GAGCTAAATGCACAAGCCGAGGATCGGCCCGATCACCCCCTGGATGCTATCGATCCTGCTGCCAC
AACCCTCGGTCCGACTCGACCTTAGAC
Found at i:31173011 original size:158 final size:158
Alignment explanation
Indices: 31172818--31173247 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 158
31172808 AGCTGGTCAG
* * *
31172818 AGAGGCAAAATGTGCAAGCTGGGGACCGACCCGGTCCCCCCTACGTGCTATCGATCCTGCTGTCG
1 AGAGGCAAAATGTGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTGCTGTCG
* *
31172883 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAG-TCAACCCGCGA
66 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCT-AACCCACGA
*
31172947 CACAAGCGTACGGGCGC-TAAGCCGGCCGA
130 AACAAGCGTACGGGCGCTTAA-CCGGCCGA
* ** * *
31172976 AGAGGCATAATGTGCAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTACCGAT-CTCGCTGC
1 AGAGGCAAAATGTGCAAGCCGAGGATCGACCCGGTCCCCC-CTACGTGCTATCGATCCT-GCTGT
* * * ** * *
31173040 CACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCA
64 CGCAACCCTCGGTCCGGTC-CGATCTTAGAC-TGGGAATGAATTCCGTATGCCTAAGCTAACCCA
* ** * * *
31173103 TGAAACGGGTGTGCGGGCGCTTAACCGGCCGG
127 CGAAACAAGCGTACGGGCGCTTAACCGGCCGA
* * * * * * *
31173135 AGAGGCAGATTGCGCAAGCC-AGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTC
1 AGAGGCAAAATGTGCAAGCCGA-GGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTGCTGTC
* * **
31173199 GTAACCTTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTT-CGTATGC
65 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA-TTCCGTATGC
31173248 TTAGACTGGG
Statistics
Matches: 216, Mismatches: 45, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 90 0.42
159 120 0.56
160 5 0.02
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
AGAGGCAAAATGTGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTGCTGTCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCTAACCCACGAA
ACAAGCGTACGGGCGCTTAACCGGCCGA
Found at i:31173120 original size:159 final size:158
Alignment explanation
Indices: 31172768--31173239 Score: 375
Period size: 158 Copynumber: 3.0 Consensus size: 158
31172758 TCCGTATGCT
* ** * * * *
31172768 TATGCCTAAGTCAACCCACAAAACGAA-CGTGGGGGCTCTTAGCTGGTC-AGAGAGGCAAAATGT
1 TATGCCTAAGTCAACCCACGAAAC-AAGCGTACGGGCGCTTAACCGGCCGA-AGAGGCAAAATGT
* * * * *
31172831 GCAAGCTGGGGACCGACCCGGTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCC
64 GCAAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCC
* * *
31172896 GGTCCGATCTTAGACTGGGAATGAATTCCG
129 GGTCCGAGCTTAGACTGGGAATGAACTCCC
* * *
31172926 TATGCCTAAGTCAACCCGCGACACAAGCGTACGGGCGC-TAAGCCGGCCGAAGAGGCATAATGTG
1 TATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTTAA-CCGGCCGAAGAGGCAAAATGTG
* ** *
31172990 CAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTACCGAT-CTCGCTGCCACAACCCTCGGTC
65 CAAGCCGAGGACCGACCCGGTCCCCC-CTACGTGCTACCGATCCT-GCTGCCACAACCCTCGATC
* * *
31173054 TGG-CTGGGGCTTAGACAT-GGAATGAACTCCC
128 CGGTC-CGAGCTTAGAC-TGGGAATGAACTCCC
* ** * * * * * *
31173085 TATGCCTAAG-CTAACCCATGAAACGGGTGTGCGGGCGCTTAACCGGCCGGAGAGGCAGATTGCG
1 TATGCCTAAGTC-AACCCACGAAACAAGCGTACGGGCGCTTAACCGGCCGAAGAGGCAAAATGTG
** * * ** * ** * *
31173149 CAAGCC-AGGGATTGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGTAACCTTCGGTCC
65 CAAGCCGA-GGACCGACCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCC
** *
31173213 GGTTTGATCTTAGACTGGGAATGAACT
129 GGTCCGAGCTTAGACTGGGAATGAACT
31173240 TCGTATGCTT
Statistics
Matches: 249, Mismatches: 52, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 120 0.48
159 120 0.48
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
TATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTTAACCGGCCGAAGAGGCAAAATGTGC
AAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGG
TCCGAGCTTAGACTGGGAATGAACTCCC
Found at i:31174646 original size:159 final size:158
Alignment explanation
Indices: 31174354--31174851 Score: 588
Period size: 159 Copynumber: 3.1 Consensus size: 158
31174344 GCTTACACAT
* * * *
31174354 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAGCC-AGTTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-TCGGA
* * * * * * * * * * * *
31174418 GAGGCAGAATGCGTAAGTCGGGGACCGACCCGATCACCCCCTGCATGTTACCGATCCTACTGCCG
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTC-CCCCCTGCGTGCTGCCGATCCTGCTACCA
*
31174483 CAACCCTCGGTCCGGTCCAATCTTAGACTG
129 CAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * * *
31174513 GGAATCAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAG
* * * *
31174578 AGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTACCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGCCGATCCTGCTACCAC
* ** **
31174643 AACCCTCGGTCCGATTGGGGCTTAGACAT-
130 AACCCTCGGTCCGGTCCGATCTTAGAC-TG
* * * *
31174672 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAG
* * *
31174737 AGGTAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCACA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCACA
31174802 ACCCTCGGTCCGGTCCGATCTTAGACTG
131 ACCCTCGGTCCGGTCCGATCTTAGACTG
*
31174830 GGAATGAACTTCGTATG-CTAAG
1 GGAATGAACTCCGTATGCCTAAG
31174852 ACTAGGGATG
Statistics
Matches: 281, Mismatches: 54, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
157 6 0.02
158 63 0.22
159 210 0.75
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCACA
ACCCTCGGTCCGGTCCGATCTTAGACTG
Found at i:31174862 original size:26 final size:27
Alignment explanation
Indices: 31174824--31174878 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
31174814 GTCCGATCTT
31174824 AGACTGGGAATGAACT-TCGTATG-CTA
1 AGACTGGGAATGAACTCT-GTATGCCTA
31174850 AGACTAGGG-ATGAACTCTGTATGCCTA
1 AGACT-GGGAATGAACTCTGTATGCCTA
31174877 AG
1 AG
31174879 TCAACCCACG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (27 bp):
AGACTGGGAATGAACTCTGTATGCCTA
Found at i:31174923 original size:343 final size:345
Alignment explanation
Indices: 31174519--31175301 Score: 991
Period size: 355 Copynumber: 2.2 Consensus size: 345
31174509 ACTGGGAATC
* * *
31174519 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCAT
1 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAT
* * * *
31174584 AATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTA-C-CACAACC
66 AATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGATCCCGCTACCTCACAACC
* *
31174647 CTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
131 CTCGGTCCGATTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA
* * * *
31174712 CGTGCGGGCACTCAGCCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCT
196 CGTGCGAGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCT
* *
31174777 GCGTGCTG-TCGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-T
261 ACGTGCCGCT-GATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTT
*
31174840 TCGTATGCTAAGACTAG-GGATG
325 TC-TATGCTAAGACT-GTGGATA
* *
31174862 AACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAT
1 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAT
* * * *
31174927 AATGCGCAAGCCAGGGATCAGCCCGATCCCCTTCTGCGTGCTACCGATCCCGCTATCGGTCCTGC
66 AATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGATCCCGCTA------C--C
* * *
31174992 TGTCACAACCCTCGGTCTGGTTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTATGCCAACCC
123 --TCACAACCCTCGGTCCGATTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCC
* ** *
31175057 ACGAAACGGACGTGCGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTC
186 ACGAAACGGACGTGCGAGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTC
* * ***** * *
31175122 GGTCCCCCTTACGTGCCGCTGATCGTGCTGTTGTAACCCTCGGTCTGGTTCGATCTTAGACTGGG
251 GGTCCCCCCTACGTGCCGCTGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGG
*
31175187 AATGAACTTTCTATGCTTAGACTGTGGATA
316 AATGAACTTTCTATGCTAAGACTGTGGATA
* * * ** * * *
31175217 AACTTTGTATGCCTAAGTCAACACATGAAACGAGCGTGCGTACGCTCAGCCAACCAGAGAGGCAG
1 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAT
31175282 AATGCGCAAGCCGGGGATCG
66 AATGCGCAAGCCGGGGATCG
31175302 AACGGGTGGT
Statistics
Matches: 374, Mismatches: 51, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
343 107 0.29
352 1 0.00
354 1 0.00
355 261 0.70
356 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (345 bp):
AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAT
AATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGATCCCGCTACCTCACAACC
CTCGGTCCGATTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA
CGTGCGAGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCT
ACGTGCCGCTGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTT
CTATGCTAAGACTGTGGATA
Found at i:31175003 original size:514 final size:506
Alignment explanation
Indices: 31173989--31175137 Score: 1237
Period size: 514 Copynumber: 2.2 Consensus size: 506
31173979 AACTCCGTAT
* * *
31173989 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * *** * *
31174054 TCC-ATCGAAAAGGCAGAATGTGCAAGCCGGGAATCAACTCGATCCTTTTTTGCGTGCTGTCGGT
65 -CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCC-CCCTTACGTGCTGCCGGT
* * *
31174118 CGCACTACAACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCC
128 CCCACTACAACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCC
* * * * *
31174183 AACCCACGAAATGGGTGTACAGGCACTCAGTCAGCCGGGAAGGCAGAATGCGCAAGCTGGGGATC
193 AACCCACGAAACGGGCGTACAGGCACTCAGCCAGCCGGGAAGGCAGAATGCACAAGCCGGGGATC
* *
31174248 AACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACTGCAACCCTCGGTTCGG
258 AACCTGGTCCCCCCTGCGTGCTGTCGATCC-GCTGC--GTAC-GCTAC--CAACCCTCGGTCCGG
*
31174313 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTACACATGGAATGAACTCTGTATGCCTAAGC
317 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTAACACATGGAATGAACTCTGTATGCCTAAGC
* * ** * * *
31174378 CAACCCACGAAACGAGCGTGCAGACGCTCAGCCAGTTGGAGAGGCAGAATGCGTAAGTCGGGGAC
382 CAACCCACGAAACAAGCGTGCAGACACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGAC
* * *
31174443 CGACCCGATCACCCCCTGCATGTTACCGATCCTACTGCCGCAACCCTCGGTCCGGTCCAA
447 AGACCCGATCACCCCCTGCATGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCCAA
* * * *
31174503 TCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACT-GGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
31174568 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGGTC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCT-TACGTGCTGCCGGTC
* * * * *
31174633 CCGCTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCACTACAACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCA
* * * * *
31174698 ACCCACGAAACGGGCGTGCGGGCACTCAGCCGGTC-GGAGAGGTAGAATGCACAAGCCGGGGATC
194 ACCCACGAAACGGGCGTACAGGCACTCAGCCAGCCGGGA-AGGCAGAATGCACAAGCCGGGGATC
**
31174762 -GGCTCGGTCCCCCCTGCGTGCTGTCGAT-C-CTGC-TAC-C-A-CAACCCTCGGTCCGGTCCGA
258 AACCT-GGTCCCCCCTGCGTGCTGTCGATCCGCTGCGTACGCTACCAACCCTCGGTCCGGTCCGA
* * * *
31174820 TCTTAGACTGGGAATGAACTTCGTATGCTAAGAC-TAGGGATGAACTCTGTATGCCTAAGTCAAC
322 TCTTAGACTGGGAATGAACTCCGTATGCTAACACAT-GGAATGAACTCTGTATGCCTAAGCCAAC
* * *
31174884 CCACGAAACAAGCGTGCGGGCACTCAGCC-GACCGGAGAGGCATAATGCGCAAGCCAGGGATCAG
386 CCACGAAACAAGCGTGCAGACACTCAGCCAG-CCGGAGAGGCAGAATGCGCAAGCCAGGGA-CAG
* * *
31174948 -CCCGATC-CCCTTCTGCGTGCTACCGATCCCGCTATCGGTCCTGCTGTCACAACCCTCGGTCTG
449 ACCCGATCACCC-CCTGCATGCTACCGAT--C-CTA------CTGC---CACAACCCTCGGTCCG
****
31175011 GTTGGG
501 GTCCAA
* * * * *
31175017 GCTTAGACAAGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACG-GACGTGCGAGCGCTCA
1 GCTTAGAC-TGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * *
31175081 GCCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGGTCCCCCTTACGTGC
64 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTTACGTGC
31175138 CGCTGATCGT
Statistics
Matches: 530, Mismatches: 82, Indels: 47
0.80 0.12 0.07
Matches are distributed among these distances:
501 5 0.01
502 144 0.27
503 2 0.00
504 1 0.00
505 4 0.01
506 1 0.00
508 2 0.00
511 8 0.02
513 18 0.03
514 345 0.65
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (506 bp):
GCTTAGACTGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTTACGTGCTGCCGGTCCC
ACTACAACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTACAGGCACTCAGCCAGCCGGGAAGGCAGAATGCACAAGCCGGGGATCAAC
CTGGTCCCCCCTGCGTGCTGTCGATCCGCTGCGTACGCTACCAACCCTCGGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTAACACATGGAATGAACTCTGTATGCCTAAGCCAACCCACG
AAACAAGCGTGCAGACACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGACAGACCCGAT
CACCCCCTGCATGCTACCGATCCTACTGCCACAACCCTCGGTCCGGTCCAA
Found at i:31175220 original size:26 final size:26
Alignment explanation
Indices: 31175176--31175228 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31175166 CTGGTTCGAT
*
31175176 CTTAGACTGGGAATGAACTTTCTATG
1 CTTAGACTGGGAATAAACTTTCTATG
*
31175202 CTTAGACTGTGG-ATAAACTTTGTATG
1 CTTAGACTG-GGAATAAACTTTCTATG
31175228 C
1 C
31175229 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTTCTATG
Found at i:31175932 original size:26 final size:26
Alignment explanation
Indices: 31175882--31175934 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31175872 GGCTCAAAAT
* *
31175882 CTTAGACTTGGAATCAAGTCCGTATG
1 CTTAGACATGGAATCAACTCCGTATG
* *
31175908 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATCAACTCCGTATG
31175934 C
1 C
31175935 ATAGGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATCAACTCCGTATG
Found at i:31176331 original size:13 final size:13
Alignment explanation
Indices: 31176313--31176340 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
31176303 CGGTTGCTCA
31176313 GCTGGTCGGAGAG
1 GCTGGTCGGAGAG
31176326 GCTGGTCGGAGAG
1 GCTGGTCGGAGAG
31176339 GC
1 GC
31176341 AGAATGTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.18, G:0.54, T:0.14
Consensus pattern (13 bp):
GCTGGTCGGAGAG
Found at i:31176471 original size:26 final size:26
Alignment explanation
Indices: 31176433--31176483 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31176423 TCGGTCTGAT
31176433 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31176459 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
31176484 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31176805 original size:159 final size:158
Alignment explanation
Indices: 31176458--31176874 Score: 466
Period size: 159 Copynumber: 2.6 Consensus size: 158
31176448 AACTCCGTAT
* * * *
31176458 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * *
31176523 CCGGTCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCTCTTACGTGCTGTCGATCC
66 CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCAGATCCCCCTTACGTGCTGTCGATCC
** *
31176588 TGCTACCACAACCCTCGGTCCGGTCTGA
131 CACTACCACAACCCTCGATCCGGTCTGA
* * * * *
31176616 TCTTAGAC-TGTGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTTCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * *
31176680 GCTAGTCGGAGAGGCATAATGTGTAAGCTGGGGATCGACCTAG-TCCCCCTCTACGTGCTG-CTG
65 GCCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACC-AGATCCCCCT-TACGTGCTGTC-G
* * * * *
31176743 GTCCCACTGCCACAACCTTTGATCCGG-CTGGG
127 ATCCCACTACCACAACCCTCGATCCGGTCT-GA
* * * * *
31176775 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCAACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
*
31176840 CCAGTTGGAGAGGCAGAATGCT-CAAGCCGGGGATC
66 CCAGTCGGAGAGGCAGAATG-TGCAAGCCGGGGATC
31176875 AGCTTGGTCC
Statistics
Matches: 213, Mismatches: 39, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 95 0.45
159 113 0.53
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCAGATCCCCCTTACGTGCTGTCGATCC
CACTACCACAACCCTCGATCCGGTCTGA
Found at i:31177335 original size:26 final size:26
Alignment explanation
Indices: 31177299--31177351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31177289 CTAATCTGAT
31177299 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
31177325 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
31177351 C
1 C
31177352 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:31177711 original size:26 final size:26
Alignment explanation
Indices: 31177682--31177732 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31177672 GATCCGAACA
*
31177682 TAGATAGGGAATGAACTCCGTATGCT
1 TAGACAGGGAATGAACTCCGTATGCT
*
31177708 TAGACATGGAATGAACTCCGTATGC
1 TAGACAGGGAATGAACTCCGTATGC
31177733 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCGTATGCT
Found at i:31179343 original size:26 final size:26
Alignment explanation
Indices: 31179307--31179359 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31179297 CCGATCTGAT
*
31179307 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
31179333 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
31179359 C
1 C
31179360 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:31179711 original size:26 final size:26
Alignment explanation
Indices: 31179673--31179725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31179663 CCAATCCAAT
*
31179673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
31179699 CTTAGACAT-GGAATAAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
31179725 C
1 C
31179726 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:31179896 original size:353 final size:352
Alignment explanation
Indices: 31179465--31180269 Score: 1083
Period size: 353 Copynumber: 2.3 Consensus size: 352
31179455 GCTGATCCCG
* * * * **
31179465 CTGTCGATCCTGCTACCACAACCCTCGGTCTGATTGGGGCTTAGAC-ATGGAATGAACTCCGTAT
1 CTGTCGATCCTGCTGCCACAACCCTCAGTCCGATTCGATCTTAGACTA-GGAATGAACTCCGTAT
* * ** *
31179529 GCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAGCCTATCGGAGAGGCAGAATACGCAAG
65 GCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCAGACCGGAGAGGCAGAATACGCAAG
* * * * *
31179594 CCGGGGATCGACCCGATCC-CTCTGCATGCTGTCGATCCTCCTGCTAGTCCTGCTGCTGCAACTC
130 CCAGGGATCGACCCGATCCTCCCTGCATGCTGTCGATCCTACTGCTAGTCCTGCTGCCGCAACCC
*
31179658 TCGATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCTGTA
195 TCG-TCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTA
* * * * * *
31179723 TGCCTAAGCCAACCAATAAAACGAGTATGCGGGCGCTTAGTCGGCTGGAGAGGTAGAATGCGTAA
259 TGCCTAAGCCAACCAATAAAACGAGCATGCGGGCACTCAG-CCGCCGGAGAGGTAGAATGCGCAA
*
31179788 GCCGGGGACTGGCCCAATCCCCCCTGCGTA
323 GCCGGGGACTGGCCCAATCCCCCCTACGTA
* **
31179818 CTGTCGATCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTTTGTATG
1 CTGTCGATCCTGCTGCCACAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTCCGTATG
* * *
31179883 CCTAAGTCAACCCACGAAATGAGCATGCAGGCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGC
66 CCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCAGACCGGAGAGGCAGAATACGCAAGC
* * * * *
31179948 CAGGGATCGGCCCGATCCTTCCCTGCGTGCTGTCTATCCTACTGTTGGTCCTGCTGCCGCAACCC
131 CAGGGATCGACCCGATCC-TCCCTGCATGCTGTCGATCCTACTGCTAGTCCTGCTGCCGCAACCC
* ** * *
31180013 TCGTCCAGTCTGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACATGGAATGAACTCCGTAT
195 TCGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTAT
* * *
31180078 GCCTAAGCCAACCTATGAAACGAGCGTGCGGGCACTCAGCCGCCGGAGAGGTAGAATGCGCAAGC
260 GCCTAAGCCAACCAATAAAACGAGCATGCGGGCACTCAGCCGCCGGAGAGGTAGAATGCGCAAGC
* **
31180143 CGGGGACTGGCTCGGTCCCCCCTACGTA
325 CGGGGACTGGCCCAATCCCCCCTACGTA
* * *
31180171 CTATCGATCCTGCTAGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
1 CTGTCGATCCTGCT-GCCACAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTCCGTAT
* * *
31180236 GCATAAGTCAACCCACGAAACGAGCATGTGGGCG
65 GCCTAAGTCAACCCACGAAATGAGCATGCGGGCG
31180270 TTGAGCCGGT
Statistics
Matches: 392, Mismatches: 56, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
353 187 0.48
354 165 0.42
355 40 0.10
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (352 bp):
CTGTCGATCCTGCTGCCACAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCAGACCGGAGAGGCAGAATACGCAAGC
CAGGGATCGACCCGATCCTCCCTGCATGCTGTCGATCCTACTGCTAGTCCTGCTGCCGCAACCCT
CGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATG
CCTAAGCCAACCAATAAAACGAGCATGCGGGCACTCAGCCGCCGGAGAGGTAGAATGCGCAAGCC
GGGGACTGGCCCAATCCCCCCTACGTA
Found at i:31180065 original size:26 final size:26
Alignment explanation
Indices: 31180027--31180079 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31180017 CCAGTCTGAT
*
31180027 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31180053 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31180079 C
1 C
31180080 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31180289 original size:354 final size:351
Alignment explanation
Indices: 31179000--31180323 Score: 1237
Period size: 354 Copynumber: 3.7 Consensus size: 351
31178990 TCTTAGATTG
* * * * * * * * * * *
31179000 GGAATGAACTCTGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGTGTTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCAGCCG-CCGGAG
* * * * * * * * * *
31179065 AGGCATAATGCGCAAGCCGAGGATTGGCCTGATCCCCCTCTGCGTGCTGTCGGTCCCGCT-CCCA
65 AGGTAGAATGCGCAAGCCGGGGACTGGCCCGGTCCCCC-CTGCGTACTGTCGATCCTGCTAGCCA
* ** * ** * * *
31179129 CAACCCTC-GATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCACGA
129 CAACCCTCAG-TCCGATTCGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * *
31179193 AATGGGCATGCGGGAGCTTAGCCGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATTGGCCCTATC
192 AATGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATC
** *
31179258 CCCCTGCGGGCTGTC-A----A----TA-T--TGTTGCCGCAACCCTCAGTCC-GATCTGATCTT
257 CCCCTGCATGCTGTCGATCCTACTGCTAGTCCTGCTGCCGCAACCCTC-GTCCAG-TCTGATCTT
* *
31179310 AGACTGGGAATGAACTCCATATGCTTAAAC-T
320 AGACTGGGAATGAACTCCGTATGCTTAGACAT
* * * * * * *
31179341 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAACCGGCCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCAGCC-GCCGGA
* * * * *
31179406 GAGGCATAATGCACAAGCCGAGGA-TCAGCCCGGTCCCTCTCTGCGTGCTGCTGATCCCGCTGTC
64 GAGGTAGAATGCGCAAGCCGGGGACT-GGCCCGGTCCC-C-C--C-TGC-G-T-A-----CTGTC
* * * **
31179470 GATCCTGCTA-CCACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
115 GATCCTGCTAGCCACAACCCTCAGTCCGATTCGATCTTAGAC-TGGAATGAACTCCGTATGCCTA
* * ** *
31179534 AGCCAACCCACAAAATGAGCATGCGGGCGCTCAGCCTATCGGAGAGGCAGAATACGCAAGCCGGG
179 AGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGG
* * * * *
31179599 GATCGACCCGATCCCTCTGCATGCTGTCGATCCTCCTGCTAGTCCTGCTGCTGCAACTCTCGATC
244 GATCGGCCCGATCCCCCTGCATGCTGTCGATCCTACTGCTAGTCCTGCTGCCGCAACCCTCG-TC
* **
31179664 CAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
308 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
* * * * * * *
31179708 GGAATAAACTCTGTATGCCTAAGCCAACCAATAAAACGAGTATGCGGGCGCTTAGTCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCAG-CCGCCGGAG
* **
31179773 AGGTAGAATGCGTAAGCCGGGGACTGGCCCAATCCCCCCTGCGTACTGTCGATCCTGCT-GCCAC
65 AGGTAGAATGCGCAAGCCGGGGACTGGCCCGGTCCCCCCTGCGTACTGTCGATCCTGCTAGCCAC
* **
31179837 AACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAA
130 AACCCTCAGTCCGATTCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
31179902 TGAGCATGCAGGCGCTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCT
194 TGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCC-
* * * *
31179967 TCCCTGCGTGCTGTCTATCCTACTGTTGGTCCTGCTGCCGCAACCCTCGTCCAGTCTGATCTTAG
258 -CCCTGCATGCTGTCGATCCTACTGCTAGTCCTGCTGCCGCAACCCTCGTCCAGTCTGATCTTAG
*
31180032 ACTGGGAATGAACTCGGTATGCTTAGACAT
322 ACTGGGAATGAACTCCGTATGCTTAGACAT
* * *
31180062 GGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCACTCAGCCGCCGGAGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCAGCCGCCGGAGA
* * *
31180127 GGTAGAATGCGCAAGCCGGGGACTGGCTCGGTCCCCCCTACGTACTATCGATCCTGCTAGCCACA
66 GGTAGAATGCGCAAGCCGGGGACTGGCCCGGTCCCCCCTGCGTACTGTCGATCCTGCTAGCCACA
* * *
31180192 ACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC
131 ACCCTCAGTCCGATTCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
* * * * * * ** *
31180257 GAGCATGTGGGCGTTGAGCCGGTCGAAGAGGCATAATGCGTAAGATGGGGATCGGTCCGATCCCC
195 GAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCC
31180322 CT
260 CT
31180324 CTGTGTACTA
Statistics
Matches: 807, Mismatches: 137, Indels: 66
0.80 0.14 0.07
Matches are distributed among these distances:
341 1 0.00
342 81 0.10
343 2 0.00
344 1 0.00
345 1 0.00
346 3 0.00
347 1 0.00
348 1 0.00
352 5 0.01
353 187 0.23
354 340 0.42
355 42 0.05
358 1 0.00
359 1 0.00
360 1 0.00
361 3 0.00
362 1 0.00
363 2 0.00
364 2 0.00
365 2 0.00
366 126 0.16
367 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (351 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCAGCCGCCGGAGA
GGTAGAATGCGCAAGCCGGGGACTGGCCCGGTCCCCCCTGCGTACTGTCGATCCTGCTAGCCACA
ACCCTCAGTCCGATTCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
AGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
TGCATGCTGTCGATCCTACTGCTAGTCCTGCTGCCGCAACCCTCGTCCAGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACAT
Found at i:31180470 original size:159 final size:158
Alignment explanation
Indices: 31180052--31180498 Score: 451
Period size: 159 Copynumber: 2.8 Consensus size: 158
31180042 AACTCGGTAT
* * * *
31180052 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * *
31180117 CCGCCGGAGAGGTAGAATGCGCAAGCCGGGGA-CTGGCTCGGTCCCCCCTACGTACTATCGATCC
66 CCGTCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GGCTCGATCCCCCCTACGTACTACCGATCC
**
31180181 TGCTAGCCACAACCCTCAGTCCGGTTCGA
130 CACTAGCCACAACCCTCAGTCCGGTTCGA
* * * * * *
31180210 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGTGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * ** **
31180274 GCCGGTCGAAGAGGCATAATGCGTAAGATGGGGATCGG-TCCGATCCCCCTCTGTGTACTACC-A
65 GCC-GTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCT-CGATCCCCC-CTACGTACTACCGA
* * *
31180337 GTCCCACT-GCCACAACCCTCGGTCTGGCTT-GG
127 -TCCCACTAGCCACAACCCTCAGTCCGG-TTCGA
* *
31180369 GCTTAAACATGGAATGAACTCAC-TATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * *
31180433 GCCGATCGGAGAGGCAGAATGCGTAAGCCAGGCATCGGCCTTG-TCCCCCCTGCGTGCTACCGAT
65 GCCG-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCGG-CTCGATCCCCCCTACGTACTACCGAT
31180497 CC
128 CC
31180499 TGCTATCGCA
Statistics
Matches: 233, Mismatches: 43, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
157 1 0.00
158 70 0.30
159 141 0.61
160 20 0.09
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTACGTACTACCGATCCC
ACTAGCCACAACCCTCAGTCCGGTTCGA
Found at i:31181596 original size:26 final size:26
Alignment explanation
Indices: 31181567--31181619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31181557 CCCGTCTGAT
*
31181567 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31181593 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31181619 C
1 C
31181620 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31181766 original size:184 final size:184
Alignment explanation
Indices: 31181408--31181777 Score: 483
Period size: 184 Copynumber: 2.0 Consensus size: 184
31181398 TTCGGCTAGG
* *
31181408 GCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACCCACAAAACAAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACAAGCATACGGGCGCTCAA
* * * * * *
31181473 TCGATCAAAGAGGCAGAATGTGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCGTGCTGTTGATCC
66 TCGACCAAAGAGGCAAAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
* * * *
31181538 TGCTGCTGCAACCCTCAGTCCCGTCTGATCTTAGACTGGGAATGAACTCTGTAT
131 TACTGCTGCAACCCTCAGTCCCGTCTAATCCTAGACTAGGAATGAACTCTGTAT
* * ** * *
31181592 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACAAGCATACGGGCGCTCAA
* ** * **
31181657 TCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCCTGCATGCTGTCGATC
66 TCGACCAAAGAGGCAAAATGCGCAAGCCAAGGATCGGCCCGGT-CCCCCCTGCATGCTGTCGATC
*
31181722 CTACTG-TCGCAACCCTTAGT-CCGTCTAATCCTAGACTAGGAATGAACTCTGTAT
130 CTACTGCT-GCAACCCTCAGTCCCGTCTAATCCTAGACTAGGAATGAACTCTGTAT
31181776 GC
1 GC
31181778 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
184 124 0.78
185 35 0.22
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACAAGCATACGGGCGCTCAA
TCGACCAAAGAGGCAAAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
TACTGCTGCAACCCTCAGTCCCGTCTAATCCTAGACTAGGAATGAACTCTGTAT
Found at i:31181893 original size:158 final size:158
Alignment explanation
Indices: 31181602--31182090 Score: 455
Period size: 158 Copynumber: 3.1 Consensus size: 158
31181592 GCTTAGACAT
* * *
31181602 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCGGAG
* * * * *
31181667 AGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCCTGCATGCTGTCGATCCTACTGTCGC
66 AGGCAAAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCCTGCATGCTGTCGATCCCACTGCCAC
31181732 AACCCTTAGTCCGTCTAATCCTAGACTA
131 AACCCTTAGTCCGTCTAATCCTAGACTA
* * * * * *
31181760 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGTTGAGCCGGCCGG-G
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCGGAG
* * * * * *
31181824 AGGGCATAATGCGCAAGTCGGGGACCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCA
66 A-GGCAAAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCCTGCATGCTGTCGATCCCACTGCCA
** * ** *
31181889 CAACCCTCGGTCCGACTGGGGT-TTAGAC-A
130 CAACCCTTAGTCCGTCT--AATCCTAGACTA
* ** * * * * * *
31181918 TGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAAGGGTGTGCGGGCGCTCAACCGGTCGAA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCGGA
* * ** * * * * * * * *
31181983 GAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGT-CCCCCTTGCGTACTGTCAATCCTACTACCA
65 GAGGCAAAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCCTGCATGCTGTCGATCCCACTGCCA
* * * *
31182047 CAACCCTTGGTCCGTCCAATCTTAGACTG
130 CAACCCTTAGTCCGTCTAATCCTAGACTA
31182076 GGAATGAACTCCGTA
1 GGAATGAACTCCGTA
31182091 CGCTTAGACT
Statistics
Matches: 261, Mismatches: 63, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 22 0.08
158 157 0.60
159 78 0.30
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCGGAG
AGGCAAAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCCTGCATGCTGTCGATCCCACTGCCAC
AACCCTTAGTCCGTCTAATCCTAGACTA
Found at i:31182097 original size:26 final size:26
Alignment explanation
Indices: 31182067--31182116 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
31182057 TCCGTCCAAT
*
31182067 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAAATCCGTACG
*
31182093 CTTAGACTGGGGATGAAATCCGTA
1 CTTAGACTGGGAATGAAATCCGTA
31182117 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTACG
Found at i:31188950 original size:159 final size:159
Alignment explanation
Indices: 31188649--31189048 Score: 462
Period size: 159 Copynumber: 2.5 Consensus size: 159
31188639 ACTCCGAATG
*
31188649 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
31188714 CAGCTGGAGAGGTAGAATGGGCAAGCCAGGGATTAGCCTGGTCCCCCTCTGTGTGTTGTCGATCC
66 CGGCTGAAGAGGCAGAATGCGCAAGACAGGGATTAGCCCAGTCCCCCTCTATGTGCTGTCGATCC
* * * * *
31188779 TACTGTCGCAACCCTCGGTTTGATCT-GAC
131 CACTGCCACAACCCTCGGTTCG-GCTAGAC
* * * * * *
31188808 CTTAGAC-TGGGAATGAACTCCGTTTGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
31188872 CCGGCTGAAGAGGCATAATGCGCAAGACAGGGATTGGCCCAGTCCTCCTCTATGTGCTGTCGGTC
65 CCGGCTGAAGAGGCAGAATGCGCAAGACAGGGATTAGCCCAGTCCCCCTCTATGTGCTGTCGATC
* **
31188937 CCGCTGCCACAACCCTCGGTTCGGCTAGGG
130 CCACTGCCACAACCCTCGGTTCGGCTAGAC
* * * * *
31188967 CTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*
31189032 CGGCTGAAGAGGTAGAA
66 CGGCTGAAGAGGCAGAA
31189049 CGTGTAAGTC
Statistics
Matches: 197, Mismatches: 41, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
158 3 0.02
159 193 0.98
160 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCTGAAGAGGCAGAATGCGCAAGACAGGGATTAGCCCAGTCCCCCTCTATGTGCTGTCGATCC
CACTGCCACAACCCTCGGTTCGGCTAGAC
Found at i:31189534 original size:26 final size:26
Alignment explanation
Indices: 31189505--31189557 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31189495 CCGATCTGAT
31189505 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31189531 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31189557 C
1 C
31189558 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31190095 original size:157 final size:157
Alignment explanation
Indices: 31189531--31190283 Score: 499
Period size: 157 Copynumber: 4.7 Consensus size: 157
31189521 ACTCCGTATG
* * * *
31189531 CTTAGACAT-GGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGTATGCGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * * * ** * ***
31189595 TCGG-TCGGAGAGGCAGAATGC-CAAGTCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTTGATC
65 CCGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCTTCCTACATGCTACCGATC
*
31189658 CTGTTGCCACAACCCTCAGTCTGGT-TCGAT
129 CTGTTGCCACAA-CCTC-GTCCGGTCTCGAT
* * * * * * * * *
31189688 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
* *
31189753 CGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCTCTCCGACATGC-AGCCGATT
66 CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCT-TCCTACATGCTA-CCGA-T
* * * * **
31189817 CC-GCTACCACAACACTCGATCC-GACTGGGG
128 CCTGTTGCCACAAC-CTCG-TCCGGTCTCGAT
* * *
31189847 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAA-GGGCATACGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAACGAGCATGCGGGCGCTCA
* ** ** *
31189910 ACCGGCCAGAGAGGCAGAATTTGCAAGCCGGGGATCGACTCGGTCCTTCCTACGTGCTACCGATC
64 GCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCTTCCTACATGCTACCGATC
* *
31189975 CTGTTGTCGCAACCTTCGTCCGGTCT-GAT
129 CTGTTGCCACAACC-TCGTCCGGTCTCGAT
* * * *
31190004 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
* * * * * *
31190069 CGACTGGAGATGCATAATGCGTAAGCCGAGGATC-AGTCTGGTCCCCCTCTGCGCGCTATCGATC
66 CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTC-GGT---CCT-T---C-CTA-C-AT-
* ** * * * **
31190133 CCGCTGCCGATCCTGTTATCACAACCCTCGGTTCAGT-TGGGG
119 --GCTACCGATCCTGTTGCCACAA-CCTC-GTCCGGTCTCGAT
** * * * * *
31190175 CTTAGACAT-GGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * *
31190239 CCGG-TCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCC
65 CCGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCC
31190284 CCCTGCATGT
Statistics
Matches: 460, Mismatches: 99, Indels: 63
0.74 0.16 0.10
Matches are distributed among these distances:
156 9 0.02
157 155 0.34
158 49 0.11
159 112 0.24
160 10 0.02
161 1 0.00
164 1 0.00
165 3 0.01
166 1 0.00
167 1 0.00
168 2 0.00
170 23 0.05
171 91 0.20
172 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCTTCCTACATGCTACCGATCCT
GTTGCCACAACCTCGTCCGGTCTCGAT
Found at i:31190242 original size:328 final size:316
Alignment explanation
Indices: 31189530--31190286 Score: 817
Period size: 316 Copynumber: 2.4 Consensus size: 316
31189520 AACTCCGTAT
* * * * * *
31189530 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGTATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAA
* * * ***
31189595 TCGGTCGGAGAGGCAGAA-TGCCAAGTCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTTGATCC
66 CCGGTCGGAGAGGCAGAATTG-CAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATCC
* * *
31189659 TGTTGCCACAACCCTCAGTCTGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAA
130 TGTTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
31189724 CCCACGAAACAAGCGTTCGGGCGTTGAGCCGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCGA
195 CCCACAAAACAAGCATGCGGGCGCTCAGCCGACTGGAGAGGCATAATGCGCAAGCCGAGGATCGA
*
31189789 CTCGGTCCTCTCCGACATGCAGCCGATTCCGCTACCACAACACTCGATCCGACTGGG
260 CTCGGTCCTCTCCGACATGCAGCCGATTCCGCTACCACAACACTCGATCAGACTGGG
* *
31189846 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-AGGGCATACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-AGCATACGGGCGCTCA
* * * * ** *
31189910 ACCGGCCAGAGAGGCAGAATTTGCAAGCCGGGGATCGACTCGGTCCTTCCTACGTGCTACCGATC
65 ACCGGTCGGAGAGGCAGAA-TTGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATC
* * * *
31189975 CTGTTGTCGCAACCTTC-GTCCGG-TCTGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
129 CTGTTGCCACAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * *
31190038 AACCCACAAAATGAGCATGCGGGTGCTCAGCCGACTGGAGATGCATAATGCGTAAGCCGAGGATC
193 AACCCACAAAACAAGCATGCGGGCGCTCAGCCGACTGGAGAGGCATAATGCGCAAGCCGAGGATC
* * * * * *
31190103 -AGTCTGGTCCCCCTCTGCGCGCTATCGATCCCGCTGCCGA-TCCTGTTATCACAACCCTCGGTT
258 GACTC-GGT---CCTCT-C-CG--A-C-AT---GCAGCCGATTCC-GCTACCACAACACTC-GAT
*
31190166 CAG-TTGGG
308 CAGACTGGG
** *
31190174 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAA
*
31190239 CCGGTCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCC
66 CCGGTCGGAGAGGCAGAAT-TGCAAGCCGGGGATCGGCCCGGTCCCCC
31190287 TGCATGTTGT
Statistics
Matches: 360, Mismatches: 60, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
315 5 0.01
316 166 0.46
317 46 0.13
318 2 0.01
319 5 0.01
320 1 0.00
321 2 0.01
323 1 0.00
324 1 0.00
325 2 0.01
327 4 0.01
328 120 0.33
329 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAA
CCGGTCGGAGAGGCAGAATTGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATCCT
GTTGCCACAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACAAAACAAGCATGCGGGCGCTCAGCCGACTGGAGAGGCATAATGCGCAAGCCGAGGATCGAC
TCGGTCCTCTCCGACATGCAGCCGATTCCGCTACCACAACACTCGATCAGACTGGG
Found at i:31190373 original size:26 final size:26
Alignment explanation
Indices: 31190344--31190396 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31190334 CCGATCTGAT
31190344 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31190370 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31190396 C
1 C
31190397 CTAAGCGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Done.