Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 339 of 402
Found at i:31191261 original size:26 final size:26
Alignment explanation
Indices: 31191223--31191275 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31191213 GGCTCAAAAT
* *
31191223 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31191249 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31191275 C
1 C
31191276 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31191666 original size:159 final size:159
Alignment explanation
Indices: 31191248--31191678 Score: 426
Period size: 159 Copynumber: 2.7 Consensus size: 159
31191238 AAGTTCGTAT
* * *
31191248 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAATGAGTGTCCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
31191313 TC-GGCCGGAGAGGCAGAATGTGTAAGTCGGGGATCGACCTGA-CCCCCCCTGCGTGCTGTCGGT
66 ACAGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCCTACGTGCTGTAGAT
** *
31191376 CCTGCTGCCACAACCCTTGGCTCGATTCTA
131 CCCACTGCCACAACCCTCGGCTCGA-TCTA
* * * * * ** * *
31191406 TCTTAGGC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACCAGCGTGCTGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
31191470 GCCA-GCTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTAGA
65 GACAGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCCTACGTGCTGTAGA
*
31191534 TCCCACTGCCATAACCCTCGG-TCCGA-CTA
130 TCCCACTGCCACAACCCTCGGCT-CGATCTA
* * * *
31191563 GGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTC
1 --GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * *
31191628 A-ACAGGCCGGAGAGGTAGAATACACAAGTCGGGGATCGGCCTGGTCCCCCC
64 AGACAGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCC
31191679 TGCGTTCTAC
Statistics
Matches: 212, Mismatches: 53, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 86 0.41
159 121 0.57
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
ACAGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCCTACGTGCTGTAGAT
CCCACTGCCACAACCCTCGGCTCGATCTA
Found at i:31192106 original size:26 final size:26
Alignment explanation
Indices: 31192077--31192129 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31192067 CCGGTCTGAT
31192077 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
31192103 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
31192129 C
1 C
31192130 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:31193351 original size:26 final size:26
Alignment explanation
Indices: 31193300--31193352 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31193290 CACTCAAAAT
* *
31193300 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31193326 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31193352 C
1 C
31193353 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31193715 original size:159 final size:156
Alignment explanation
Indices: 31193325--31193733 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 156
31193315 AACTTCGTAT
* * *
31193325 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTC-G
* * * * *
31193390 CCAATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTTGTGTTGTCGATCCT
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTTGTGCTGCCGATCCC
*
31193455 GCTGCCACAACCCTCGCTCTGATCCGA
130 GCTGCCACAACCCTCGCTCCGATCCGA
* * * * * ** *
31193482 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT-C
** * * * * *
31193546 GCCGGCCGGAGAGGTATAATGTGTAAGCCGGGGATCGGCCCAGTCCCCCTCTATGTGCTGCC-AG
64 GCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCCC-CT-TGTGCTGCCGA-
* **
31193610 TCCCGCTGCCACAACCCTCAG-TCCGGTTGGA
126 TCCCGCTGCCACAACCCTC-GCTCCGATCCGA
* *
31193641 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCGT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCG-
* * *
31193706 TCGATCGGAGAGGCAGAATGCACAAGCC
65 CCGATCGGAGAGGCAAAATGCGCAAGCC
31193734 AGGAATTCGC
Statistics
Matches: 200, Mismatches: 44, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 90 0.45
158 4 0.02
159 103 0.51
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCGC
CGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTTGTGCTGCCGATCCCG
CTGCCACAACCCTCGCTCCGATCCGA
Found at i:31193751 original size:159 final size:156
Alignment explanation
Indices: 31193325--31193817 Score: 435
Period size: 157 Copynumber: 3.1 Consensus size: 156
31193315 AACTTCGTAT
* * *
31193325 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTC-G
* * * *
31193390 CCAATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTTGTGTTGTCGATCC
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCG-CCCAGTCCCCCTCTTGTGCTGCCGATCC
* *
31193454 TGCTGCCACAACCCTCGCTCTGATCCGA
129 CGCTGCCACAACCCTCGCTCCGATCCGA
* * * * * ** *
31193482 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT-C
** * * * *
31193546 GCCGGCCGGAGAGGTATAATGTGTAAGCCGGGGATCGGCCCAGTCCCCCTCTATGTGCTGCC-AG
64 GCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GCCCAGTCCCCCTCT-TGTGCTGCCGA-
* **
31193610 TCCCGCTGCCACAACCCTCAG-TCCGGTTGGA
126 TCCCGCTGCCACAACCCTC-GCTCCGATCCGA
* *
31193641 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCGT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCG-
* * * * * **
31193706 TCGATCGGAGAGGCAGAATGCACAAGCCAGGAATTCGCCTTGTCCCCCTGC--GTGCTGCCGATC
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGA-TCGCCCAGTCCCCCT-CTTGTGCTGCCGATC
* * * * * *
31193769 CAGTTGTCGCAACCCTCGGTCC-AGTCTGA
128 CCGCTGCCACAACCCTCGCTCCGA-TCCGA
*
31193798 TCTTAGAC-TAGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
31193818 TTGTATGCTT
Statistics
Matches: 266, Mismatches: 55, Indels: 30
0.76 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 135 0.51
158 6 0.02
159 117 0.44
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCGC
CGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGCCCAGTCCCCCTCTTGTGCTGCCGATCCCG
CTGCCACAACCCTCGCTCCGATCCGA
Found at i:31193849 original size:26 final size:26
Alignment explanation
Indices: 31193799--31193851 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31193789 CCAGTCTGAT
* **
31193799 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
*
31193825 CTTAAACTAGGGATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
31193851 C
1 C
31193852 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:31194612 original size:159 final size:158
Alignment explanation
Indices: 31194191--31194690 Score: 388
Period size: 159 Copynumber: 3.1 Consensus size: 158
31194181 AACTCCGTAT
* * * *
31194191 GCTTTGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCATGCGTCCGGGTGG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAA--AG-A-GCGTGCGGCTGC
* * * * *
31194256 TCAGCCGACCGAAGAGGCAGAATATGC-AAGTCGGGGACCAGCTCGATCCCCTCCTGCGTGCTGT
62 TCAGCCGACCGGAGAGGCAG-A-ATGCAAAGTCAGGGATCGGCCCGATCCCCTCCTGCGTGCTGT
* ** *
31194320 CTATCCTGCTGCCACAACCCTCGGTCCGGCCTGA
125 CGATCCCACTGCCACAACCCTCGGTCCGGACTGA
* * * * * * * * *
31194354 TCTTAGAC-TGGGAATGAACTTTGTATGCCTATGTCAACTCACGAAATGAGCGTGCATGC-GCTG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAAGAGCGTGC-GGCTGCTC
* * * * * *
31194417 AACCGATCAGAGAGGCAAAATGTACAAG-CCGAGGATCGGCCCGGCA-CCCCT-CTGCGTGCTGT
64 AGCCGACCGGAGAGGCAGAATGCA-AAGTCAG-GGATCGGCCC-G-ATCCCCTCCTGCGTGCTGT
* * *
31194479 CGGTCCCACTGCCACAACCCTCGGT-CTGACTGGG
125 CGATCCCACTGCCACAACCCTCGGTCCGGACT-GA
** *
31194513 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCGTGCGGCTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGCTGCTCAG
* * * *
31194578 CCGACCGGAGAGGCAGAATGCAAAAGTCAGGGATCGGCTCGAT-CCCTTCTGTGTGCTGTCGATG
66 CCGACCGGAGAGGCAGAATGC-AAAGTCAGGGATCGGCCCGATCCCCTCCTGCGTGCTGTCGATC
** * ** * *
31194642 CTGCTGTCGTAACCCTCGGTCTGGTCTGA
130 CCACTGCCACAACCCTCGGTCCGGACTGA
*
31194671 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
31194691 TCCTATGCTT
Statistics
Matches: 259, Mismatches: 62, Indels: 37
0.72 0.17 0.10
Matches are distributed among these distances:
157 9 0.03
158 56 0.22
159 142 0.55
160 12 0.05
161 2 0.01
162 1 0.00
163 37 0.14
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGCTGCTCAG
CCGACCGGAGAGGCAGAATGCAAAGTCAGGGATCGGCCCGATCCCCTCCTGCGTGCTGTCGATCC
CACTGCCACAACCCTCGGTCCGGACTGA
Found at i:31195598 original size:26 final size:26
Alignment explanation
Indices: 31195562--31195614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31195552 CCGGTCCAAT
*
31195562 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31195588 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31195614 C
1 C
31195615 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31195925 original size:158 final size:159
Alignment explanation
Indices: 31195587--31196027 Score: 462
Period size: 159 Copynumber: 2.8 Consensus size: 159
31195577 AACTCTGTAT
* * * * ** * * *
31195587 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACCAAACTAGTGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGCGCGGGCGCTCA
* ** * *
31195651 GCCGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCAGT
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCGACGATCAGCCCGATCCCCCTCTACGTGCTGCCAGT
* *
31195716 CCCGCTGCCACAACCCTCGGTCTGGCTGGG
130 CCCACTGCCACAACCCTCGGTCCGGCTGGG
31195746 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGCGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGCGCGGGCGCTCAG
** * * * * * *
31195811 GTGGCCGGAGAGGTAGAATGCGCAAGCCGACGATCAGCTCGATCCCTC-CTACGTTCTGCC-GAT
66 CCGGCCGAAGAGGCAGAATGCACAAGCCGACGATCAGCCCGATCCCCCTCTACGTGCTGCCAG-T
*
31195874 CCCACTGCCACAACCCTCGGTCCGGCTGGT
130 CCCACTGCCACAACCCTCGGTCCGGCTGGG
* * * ** **
31195904 GCTTAGGCATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGTACAGGGTTCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGCGC-GGGCGCTCA
* * * * *
31195969 GCCGACC-AGAGAGGTAGAATGCACAAGCC-AGGGATCAGCCCGGTCCTCC-CTACGTGCTG
65 GCCGGCCGA-AGAGGCAGAATGCACAAGCCGA-CGATCAGCCCGATCCCCCTCTACGTGCTG
31196028 TCGATCCTAC
Statistics
Matches: 234, Mismatches: 43, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
157 1 0.00
158 90 0.38
159 142 0.61
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGCGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCACAAGCCGACGATCAGCCCGATCCCCCTCTACGTGCTGCCAGTC
CCACTGCCACAACCCTCGGTCCGGCTGGG
Found at i:31196068 original size:159 final size:154
Alignment explanation
Indices: 31195668--31196090 Score: 443
Period size: 159 Copynumber: 2.7 Consensus size: 154
31195658 GAAGAGGCAT
* * *
31195668 AATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCCT
1 AATGCACAAGCC-GGGATCAGCCCGGT-CCCC-CTACGTGCTGCGA-TCCCACTGCCACAACCCT
* * * *
31195733 CGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTG
62 CGGTCCGGCT-GGTCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCG
* ** * *
31195798 CGCGGGCGCTCAGGTGGCCGGAGAGGTAG
126 CACGGGCGCTCAGCCGACCAGAGAGGTAG
* * * * *
31195827 AATGCGCAAGCCGACGATCAGCTCGATCCCTCCTACGTTCTGCCGATCCCACTGCCACAACCCTC
1 AATGCACAAGCCG-GGATCAGCCCGGTCCC-CCTACGTGCTG-CGATCCCACTGCCACAACCCTC
* *
31195892 GGTCCGGCTGGTGCTTAGGCATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGT
63 GGTCCGGCTGGT-CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGC
**
31195957 ACAGGGTTCTCAGCCGACCAGAGAGGTAG
127 AC-GGGCGCTCAGCCGACCAGAGAGGTAG
* * *
31195986 AATGCACAAGCCAGGGATCAGCCCGGTCCTCCCTACGTGCTGTCGATCCTACTGTCGCAACCCTC
1 AATGCACAAGCC-GGGATCAGCCCGGTCC-CCCTACGTGCTG-CGATCCCACTGCCACAACCCTC
* * * * *
31196051 GATCCGATCTGATCTTAGTC-TGGGAATGAACTCCGTATGC
63 GGTCCG-GCTGGTCTTAGACAT-GGAATGAACTCCCTATGC
31196091 TTAGATTGGG
Statistics
Matches: 220, Mismatches: 35, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
157 2 0.01
158 89 0.40
159 123 0.56
160 6 0.03
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (154 bp):
AATGCACAAGCCGGGATCAGCCCGGTCCCCCTACGTGCTGCGATCCCACTGCCACAACCCTCGGT
CCGGCTGGTCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGCACGG
GCGCTCAGCCGACCAGAGAGGTAG
Found at i:31196970 original size:158 final size:156
Alignment explanation
Indices: 31196470--31196962 Score: 485
Period size: 158 Copynumber: 3.1 Consensus size: 156
31196460 ACTCTGTATG
* * * *
31196470 CTTAGACATGGAATGAACTCCGTGTGCCTAAGCCAACCCTTGAAACGAGCGTGCCGGCGTTTAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
* * *
31196535 CGGTCGAAGAGGTAGAATGCGTAAGTTAGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCT
65 CGATCGAAGAGGCAGAATGCGTAAG-TAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCT
* *
31196600 GCTACCACAACCCTCGGTCC--TATCCGAT
129 GCTGCCAC-ACCCTCGATCCGGTAT-CGAT
* * * *
31196628 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
* * * * * * *
31196693 CGACCGAAGAGGCATAATGCGTGAGTGGGGATCAGCCTGGTCCCTCCCTGCGTGTTGTCGGTGCC
65 CGATCGAAGAGGCAGAATGCGTAAGTAGGGATCGGCCTGGTCCC-CCCTGCGTGCTGTCGAT-CC
* * ** * **
31196758 -GCTGCTACAGCCCTTGATGTGGT-TGGGG
128 TGCTGCCACA-CCCTCGATCCGGTATCGAT
* *
31196786 CTTAGGTA-TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTTAG
1 CTTA-G-ACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
* * * * * * *
31196850 CTGATCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCTGGTCCCCCCTACGTACTGTCGATCC
64 CCGATCGAAGAGGCAGAATGCGTAAG-TAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
* *
31196915 TGTTGCCGCGACCCTCGATCCGGTAT-GAT
128 TGCTGCCAC-ACCCTCGATCCGGTATCGAT
31196944 CTTAGACTGGGAATGAACT
1 CTTAGACT-GGAATGAACT
31196963 TTGTATGCTT
Statistics
Matches: 266, Mismatches: 55, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 22 0.08
158 219 0.82
159 22 0.08
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGCC
GATCGAAGAGGCAGAATGCGTAAGTAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCCACACCCTCGATCCGGTATCGAT
Found at i:31196994 original size:26 final size:26
Alignment explanation
Indices: 31196944--31196996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31196934 CCGGTATGAT
**
31196944 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31196970 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31196996 C
1 C
31196997 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31203908 original size:26 final size:26
Alignment explanation
Indices: 31203879--31203931 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31203869 CCGATCTGAT
31203879 CTTAGACTGGGA-ATGAACTCCGTATA
1 CTTAGA-TGGGAGATGAACTCCGTATA
*
31203905 CTTAGATTGGAGATGAACTCCGTATA
1 CTTAGATGGGAGATGAACTCCGTATA
31203931 C
1 C
31203932 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGAGATGAACTCCGTATA
Found at i:31205211 original size:159 final size:159
Alignment explanation
Indices: 31204920--31205281 Score: 447
Period size: 159 Copynumber: 2.3 Consensus size: 159
31204910 CTGAACGGGT
* * * * *** ** *
31204920 CGGAGAGTCATAATGCGTAAGCCGGGGATTGGCCCGATCTGCCTCTGCGTGCTGTCGATCTCGCT
1 CGGAGAGACAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTGCCGATCTCGCT
* * *** *
31204985 GTCACAACCTTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
66 GCCACAACCCTCGATCCGGCCAGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCA
* **
31205050 TGAAACGGGTGCACGGGTGCTCAGTCGAC
131 TGAAACGGGCGCACGGGCACTCAGTCGAC
* * *
31205079 CTGAGAGACAGAGTGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTGCC-AGTCTCGT
1 CGGAGAGACAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTGCCGA-TCTCGC
* *
31205143 TGCCACAACCCTCGATCTGGCCAGGGCTTAGATATGGAATGAAATCCCTATGCCTAAGCCAACCC
65 TGCCACAACCCTCGATCCGGCCAGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCC
* *
31205208 ATGAAACGGGCGTACGGGCACTCAGTCGGC
130 ATGAAACGGGCGCACGGGCACTCAGTCGAC
* * *
31205238 CGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCT
1 CGGAGAGACAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCT
31205282 GTGTGCTGTC
Statistics
Matches: 171, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 1 0.01
159 170 0.99
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CGGAGAGACAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTGCCGATCTCGCT
GCCACAACCCTCGATCCGGCCAGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCA
TGAAACGGGCGCACGGGCACTCAGTCGAC
Found at i:31205367 original size:26 final size:26
Alignment explanation
Indices: 31205338--31205387 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
31205328 CCGATCTGAT
31205338 CTTAAAC-TGGGAATGAACTCCGTACG
1 CTTAAACAT-GGAATGAACTCCGTACG
31205364 CTTAAACATGGAATGAACTCCGTA
1 CTTAAACATGGAATGAACTCCGTA
31205388 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTACG
Found at i:31205564 original size:26 final size:26
Alignment explanation
Indices: 31205522--31205574 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31205512 CTGGTCTGAT
31205522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31205548 CTTAGACTAGGG-TTGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
31205574 C
1 C
31205575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31206746 original size:26 final size:26
Alignment explanation
Indices: 31206717--31206769 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31206707 CCGGTCCGAT
31206717 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31206743 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31206769 C
1 C
31206770 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31207031 original size:158 final size:158
Alignment explanation
Indices: 31206743--31207077 Score: 345
Period size: 158 Copynumber: 2.1 Consensus size: 158
31206733 ACTCCGTATG
* * *
31206743 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCCCAG
* * * * * * *
31206807 TCTATCGGAGAGACAGAATGCACAAGCTGGGGATCGACTCGGTCCCCCCTGCGTGCTGTTGATCC
65 TCCAGCGGAGAGACAGAATGCACAAGCAGGGGATCGACTCGATCCCCCCTACGTGCTATCGATCC
*
31206872 TGCTG-CAGCAACCCTCGATCTGATCCGAT
130 TGCTGCCA-CAACCCTCGATCCGATCCGAT
* * * **
31206901 CTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTGAG-
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCCCAGT
* * ** * * *
31206965 CCAGCTGGAGAGGCATAATGCGTAAGCAGGGGATC-AGTCCGATCCCCCCTACGTGTTATCGGTC
66 CCAGC-GGAGAGACAGAATGCACAAGCAGGGGATCGACT-CGATCCCCCCTACGTGCTATCGATC
* * **
31207029 CTGCTGCCATAACCCTCGATCCGGTTTGAT
129 CTGCTGCCACAACCCTCGATCCGATCCGAT
* *
31207059 CTTAGACTGGCAGTGAACT
1 CTTAGACTGGGAATGAACT
31207078 ACGCATTCTT
Statistics
Matches: 144, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 6 0.04
158 136 0.94
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCCCAGT
CCAGCGGAGAGACAGAATGCACAAGCAGGGGATCGACTCGATCCCCCCTACGTGCTATCGATCCT
GCTGCCACAACCCTCGATCCGATCCGAT
Found at i:31207492 original size:26 final size:26
Alignment explanation
Indices: 31207440--31207492 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31207430 CCGGTCTGAT
* *
31207440 CTTAGACTTGGAATGAACTCTGAATG
1 CTTAGACATGGAATGAACTCCGAATG
*
31207466 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGAATG
31207492 C
1 C
31207493 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGAATG
Found at i:31207708 original size:723 final size:707
Alignment explanation
Indices: 31205813--31207709 Score: 2178
Period size: 706 Copynumber: 2.7 Consensus size: 707
31205803 GTTGATCCCG
* * * *
31205813 CTGCCACAACCCTACG-TCCGACTATGGCGTAGACATGGAATGAACTCCCTATGCCTAAGCTAAC
1 CTGCCACAACCCT-CGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAAC
* * * * * *
31205877 CCACGAAACGAGTGTGCGGGTGCTCAACCGACCGGAGAGACAGAATGCGTAAGTCGGGGATCGGC
65 CCACGAAACGAGCGTGC-GGTGTTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGC
* ** * * *
31205942 TCGATCCACC-CCTGCATGCTACCGATCCTACTATTGGTCCTGCTACCACAACCCTCGATCTGAT
129 TCGATCC-CCTCCTGCAAGCTACCGATCCTACTGCTGGTCCTGCTACCGCAACCCTCGATCCGGT
*
31206006 -TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGC
193 CT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * *
31206070 TAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAAGTC-AGGGA
257 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGTCGA-GGA
* * *
31206134 TCGCCTCGATCCCCCCTACGTGCTCTCGATCCTGCTGCAGCAACCCTC-AGTCCAGTCTGATCTT
321 TCGACTCGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGA-TCCGGTCTGATCTT
* * * * *
31206198 AGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCGCTAAGTCAG
385 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAG-CAG
* * * * * *
31206263 ATGGAGAGACATAAT-CAGCCCAGTCCCCCCTACGTGCTGTCTATCTTACTACCGTAACCCTCTG
449 CTGGAGAGGCATAATGCAGCCCAGTCCCCCCTACGTGCTATCGATCCTACTACCATAACCCTCTG
* * *
31206327 TCTGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCC
514 TCCGGTCTGATCTTAGACTGGAAATGAACTACGCATGCTTAGACTAGGGATAAACTCCGTATGCC
* * * * *
31206392 TAAGTCAACCCACAAAACGAGCTTACGGGCGCTTAGCCGATCGAAGAGGCTGATCGGAGAGGCAT
579 TAAGTCAACCCACAAAACGAGCTTACGGGCGCTCAACCGACCGAAGAGGCCGATCAGAGAGGCAT
* * * *
31206457 AATACATAAGCCAAGGATCAGCCCGATCCCCTTCTGCATGCTGTTGATACTACTACCGATCCTG
644 AATACATAAGCCAAGGATCAGCCCGATCCCCATCTACATGCTGCTGATACTACTACCGATCCTA
* *
31206521 CAT-CCACAACCCTC-AGTTCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 C-TGCCACAACCCTCGA-TCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAA
*
31206584 CCCACGAAACGAGCTTGCGGTGCTT-AACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGG
64 CCCACGAAACGAGCGTGCGGTG-TTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGG
* * * * *
31206648 CTCAAT-CCCTCATGCTTA-CTACCGATCCTACTGCTGGTCCTGCTGCCCGCAA-CCTTGATCCG
128 CTCGATCCCCTCCTGC-AAGCTACCGATCCTACTGCTGGTCCTGCT-ACCGCAACCCTCGATCCG
*
31206710 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
191 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * ** * *
31206775 CCAACCCACGAAACGAGCGTGCGGGCGCCCAGTCTATCGGAGAGACAGAATGCACAAG-CTGGGG
256 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGTC-GAGG
* * * * * *
31206839 ATCGACTCGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCAGCAACCCTCGATCTGATCCGATCTT
320 ATCGACTCGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGATCCGGTCTGATCTT
* *
31206904 AGACTGGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTGAGCCAG
385 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAG-CAG
* * * *
31206969 CTGGAGAGGCATAATGCGTAAGCAGGGGATCAGTCCGATCCCCCCTACGTGTTATCGGTCCTGCT
449 CTGGAGAGGCATAATGC---AGC-------C---CAG-TCCCCCCTACGTGCTATCGATCCTACT
* * * * * *
31207034 GCCATAACCCTC-GATCCGGTTTGATCTTAGACTGGCAGTGAACTACGCATTCTTAGACTGGGGA
500 ACCATAACCCTCTG-TCCGGTCTGATCTTAGACTGGAAATGAACTACGCATGCTTAGACTAGGGA
* * * * * *
31207098 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG-TGTGCGGGTGCTCAATCGACCGAAGAGG
564 TAAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCT-TACGGGCGCTCAACCGACCGAAGAGG
* * ** ** *
31207162 CCGGTCAGAGAGGCATAATGC-TCAAG-CTGGAGATCAGCTTGATCCCCATCTACGTGCTGCTGA
628 CCGATCAGAGAGGCATAATACAT-AAGCCAAG-GATCAGCCCGATCCCCATCTACATGCTGCTGA
* *
31207225 TTCTACTACCGGTCCTA
691 TACTACTACCGATCCTA
* *
31207242 CTGCCACAACCCTCGATCCGGTTAGGGCTTAGACATGGAGTGAACTCCGTATGCCTAAGCTAACC
1 CTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACC
* * * * *
31207307 CAGGAAACGAGCGTGCAGGCGTTCAGCCGACCGAAGAGGCAGAATACGTAAGCCAGGGATCGGCC
66 CACGAAACGAGCGTGC-GGTGTTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCT
* * * *
31207372 CGGTCCCCTCCTGCAAGCTACCAATCCTGCTGCTGGTCCTGCTACCGTAACCCTCGATCCGGTCT
130 CGATCCCCTCCTGCAAGCTACCGATCCTACTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCT
* * *
31207437 GATCTTAGACTTGGAATGAACTCTGAATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
195 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
31207502 CCCATGAAATGAGCATGCGGGTGCTCAGCCGGTCAGAGAGGTAGAATGCGTAAGTCGAGGACCG-
260 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGTCGAGGATCGA
* * * *
31207566 GTCTGATCCCTCCTACGTGCTGTCGATCTTGCTATC-GCAACCCTCGATCCGGTCTGATCTTAGA
325 CTC-GATCCCCCCTACGTGCTGTCGATCCTGCT-GCAGCAACCCTCGATCCGGTCTGATCTTAGA
* * * * *
31207630 CTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAGCAAGCC
388 CTGGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGC-AGCT
31207694 GGAGAGGCATAATGCA
451 GGAGAGGCATAATGCA
31207710 CAAGCCGAGG
Statistics
Matches: 996, Mismatches: 151, Indels: 72
0.82 0.12 0.06
Matches are distributed among these distances:
705 3 0.00
706 273 0.27
707 52 0.05
708 69 0.07
709 1 0.00
710 3 0.00
717 1 0.00
720 9 0.01
721 259 0.26
722 55 0.06
723 269 0.27
724 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (707 bp):
CTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACC
CACGAAACGAGCGTGCGGTGTTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCTC
GATCCCCTCCTGCAAGCTACCGATCCTACTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGTCGAGGATCGAC
TCGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGATCCGGTCTGATCTTAGACTG
GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCAGCTGGAGA
GGCATAATGCAGCCCAGTCCCCCCTACGTGCTATCGATCCTACTACCATAACCCTCTGTCCGGTC
TGATCTTAGACTGGAAATGAACTACGCATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCA
ACCCACAAAACGAGCTTACGGGCGCTCAACCGACCGAAGAGGCCGATCAGAGAGGCATAATACAT
AAGCCAAGGATCAGCCCGATCCCCATCTACATGCTGCTGATACTACTACCGATCCTA
Found at i:31207724 original size:723 final size:715
Alignment explanation
Indices: 31205813--31207724 Score: 2197
Period size: 723 Copynumber: 2.7 Consensus size: 715
31205803 GTTGATCCCG
* * * *
31205813 CTGCCACAACCCTACG-TCCGACTATGGCGTAGACATGGAATGAACTCCCTATGCCTAAGCTAAC
1 CTGCCACAACCCT-CGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAAC
* * * * * *
31205877 CCACGAAACGAGTGTGCGGGTGCTCAACCGACCGGAGAGACAGAATGCGTAAGTCGGGGATCGGC
65 CCACGAAACGAGCGTGC-GGTGTTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGC
* ** * * *
31205942 TCGATCCACC-CCTGCATGCTACCGATCCTACTATTGGTCCTGCTACCACAACCCTCGATCTGAT
129 TCGATCC-CCTCCTGCAAGCTACCGATCCTACTGCTGGTCCTGCTACCGCAACCCTCGATCCGGT
*
31206006 -TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGC
193 CT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * *
31206070 TAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAAGTC-AGGGA
257 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGTCGA-GGA
* * *
31206134 TCGCCTCGATCCCCCCTACGTGCTCTCGATCCTGCTGCAGCAACCCTC-AGTCCAGTCTGATCTT
321 TCGACTCGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGA-TCCGGTCTGATCTT
* * * * *
31206198 AGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCGCTAAGTCAG
385 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAG-CAG
* * * * * *
31206263 ATGGAGAGACATAAT--C-AGCC-----CA-GTCCCCCCTACGTGCTGTCTATCTTACTACCGTA
449 CTGGAGAGGCATAATGCCAAGCCGGGATCAGGTCCCCCCTACGTGCTATCGATCCTACTACCATA
* * *
31206319 ACCCTCTGTCTGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGGATAAACTC
514 ACCCTCTGTCCGGTCTGATCTTAGACTGGAAATGAACTACGCATGCTTAGACTAGGGATAAACTC
* * * * *
31206384 CGTATGCCTAAGTCAACCCACAAAACGAGCTTACGGGCGCTTAGCCGATCGAAGAGGCTGATCGG
579 CGTATGCCTAAGTCAACCCACAAAACGAGCTTACGGGCGCTCAACCGACCGAAGAGGCCGATCAG
* * *
31206449 AGAGGCATAATACATAAGCCAAGGATCAGCCCGATCCCCTTCTGCATGCTGTTGATACTACTACC
644 AGAGGCATAATACATAAGCCAAGGATCAGCCCGATCCCCATCTACATGCTGCTGATACTACTACC
*
31206514 GATCCTG
709 GATCCTA
* *
31206521 CAT-CCACAACCCTC-AGTTCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 C-TGCCACAACCCTCGA-TCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAA
*
31206584 CCCACGAAACGAGCTTGCGGTGCTT-AACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGG
64 CCCACGAAACGAGCGTGCGGTG-TTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGG
* * * * *
31206648 CTCAAT-CCCTCATGCTTA-CTACCGATCCTACTGCTGGTCCTGCTGCCCGCAA-CCTTGATCCG
128 CTCGATCCCCTCCTGC-AAGCTACCGATCCTACTGCTGGTCCTGCT-ACCGCAACCCTCGATCCG
*
31206710 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
191 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * ** * *
31206775 CCAACCCACGAAACGAGCGTGCGGGCGCCCAGTCTATCGGAGAGACAGAATGCACAAG-CTGGGG
256 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGTC-GAGG
* * * * * *
31206839 ATCGACTCGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCAGCAACCCTCGATCTGATCCGATCTT
320 ATCGACTCGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGATCCGGTCTGATCTT
* *
31206904 AGACTGGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTGAGCCAG
385 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAG-CAG
* * * * *
31206969 CTGGAGAGGCATAATGCGTAAGCAGGGGATCAGTCCGATCCCCCCTACGTGTTATCGGTCCTGCT
449 CTGGAGAGGCATAATGC-CAAGC-CGGGATCAG---G-TCCCCCCTACGTGCTATCGATCCTACT
* * * * * *
31207034 GCCATAACCCTC-GATCCGGTTTGATCTTAGACTGGCAGTGAACTACGCATTCTTAGACTGGGGA
508 ACCATAACCCTCTG-TCCGGTCTGATCTTAGACTGGAAATGAACTACGCATGCTTAGACTAGGGA
* * * * * *
31207098 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG-TGTGCGGGTGCTCAATCGACCGAAGAGG
572 TAAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCT-TACGGGCGCTCAACCGACCGAAGAGG
* * ** ** *
31207162 CCGGTCAGAGAGGCATAATGC-TCAAG-CTGGAGATCAGCTTGATCCCCATCTACGTGCTGCTGA
636 CCGATCAGAGAGGCATAATACAT-AAGCCAAG-GATCAGCCCGATCCCCATCTACATGCTGCTGA
* *
31207225 TTCTACTACCGGTCCTA
699 TACTACTACCGATCCTA
* *
31207242 CTGCCACAACCCTCGATCCGGTTAGGGCTTAGACATGGAGTGAACTCCGTATGCCTAAGCTAACC
1 CTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACC
* * * * *
31207307 CAGGAAACGAGCGTGCAGGCGTTCAGCCGACCGAAGAGGCAGAATACGTAAGCCAGGGATCGGCC
66 CACGAAACGAGCGTGC-GGTGTTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCT
* * * *
31207372 CGGTCCCCTCCTGCAAGCTACCAATCCTGCTGCTGGTCCTGCTACCGTAACCCTCGATCCGGTCT
130 CGATCCCCTCCTGCAAGCTACCGATCCTACTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCT
* * *
31207437 GATCTTAGACTTGGAATGAACTCTGAATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
195 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
31207502 CCCATGAAATGAGCATGCGGGTGCTCAGCCGGTCAGAGAGGTAGAATGCGTAAGTCGAGGACCG-
260 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGTCGAGGATCGA
* * * *
31207566 GTCTGATCCCTCCTACGTGCTGTCGATCTTGCTATC-GCAACCCTCGATCCGGTCTGATCTTAGA
325 CTC-GATCCCCCCTACGTGCTGTCGATCCTGCT-GCAGCAACCCTCGATCCGGTCTGATCTTAGA
* * * * *
31207630 CTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAGCAAGCC
388 CTGGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGC-AGCT
31207694 GGAGAGGCATAATGCACAAGCCGAGGATCAG
451 GGAGAGGCATAATGC-CAAGCCG-GGATCAG
31207725 CTCGATCACC
Statistics
Matches: 1006, Mismatches: 155, Indels: 71
0.82 0.13 0.06
Matches are distributed among these distances:
705 3 0.00
706 273 0.27
707 51 0.05
708 69 0.07
709 1 0.00
710 3 0.00
716 2 0.00
720 7 0.01
721 259 0.26
722 56 0.06
723 280 0.28
724 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (715 bp):
CTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACC
CACGAAACGAGCGTGCGGTGTTCAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCTC
GATCCCCTCCTGCAAGCTACCGATCCTACTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGTCGAGGATCGAC
TCGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGATCCGGTCTGATCTTAGACTG
GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCAGCTGGAGA
GGCATAATGCCAAGCCGGGATCAGGTCCCCCCTACGTGCTATCGATCCTACTACCATAACCCTCT
GTCCGGTCTGATCTTAGACTGGAAATGAACTACGCATGCTTAGACTAGGGATAAACTCCGTATGC
CTAAGTCAACCCACAAAACGAGCTTACGGGCGCTCAACCGACCGAAGAGGCCGATCAGAGAGGCA
TAATACATAAGCCAAGGATCAGCCCGATCCCCATCTACATGCTGCTGATACTACTACCGATCCTA
Found at i:31207977 original size:26 final size:26
Alignment explanation
Indices: 31207941--31207993 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31207931 TCGGTCTGAT
31207941 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
31207967 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31207993 C
1 C
31207994 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31208544 original size:26 final size:26
Alignment explanation
Indices: 31208493--31208545 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31208483 CTGATTCAAT
*
31208493 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31208519 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
31208545 C
1 C
31208546 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31209241 original size:25 final size:26
Alignment explanation
Indices: 31209204--31209255 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
31209194 GGCTCAAACT
31209204 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
31209229 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31209255 C
1 C
31209256 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31210248 original size:26 final size:26
Alignment explanation
Indices: 31210219--31210268 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
31210209 CCATCCGATC
31210219 TTAGACTGGGGATGAACTCCGTATGG
1 TTAGACTGGGGATGAACTCCGTATGG
31210245 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTGGGGATGAACTCCGTAT
31210269 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTCCGTATGG
Found at i:31210561 original size:171 final size:171
Alignment explanation
Indices: 31210245--31210719 Score: 477
Period size: 171 Copynumber: 2.8 Consensus size: 171
31210235 CTCCGTATGG
* * * * * * ** * *
31210245 TTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCAAAACT
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
** * * * * * * * * * *
31210310 GACCGGAGAGGCATAATACGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTACTGATCCC
66 GGTCGGAGAGGCAAAATGCGAAACTCAGGGATCAGCCCGATCCCCCCCTGCGTGCTGCCGATCCT
* ****
31210375 ACTACCGATCCTGCTACCACAACCCTCAATCCGGTTGGGGC
131 GCTACCGATCCTGCTACCACAACCCTCAATCCGGTCCAAGC
*
31210416 TTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
1 TTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * *
31210480 CGGTCATAGAGGCAAAATGCGTAACTCAGGGATCAACCCGGTCCCCCCCTGCGTGCTGCCGATCC
65 CGGTCGGAGAGGCAAAATGCGAAACTCAGGGATCAGCCCGATCCCCCCCTGCGTGCTGCCGATCC
* * *** * *
31210545 TGCTACTGGTCCTGCTATTGCAACCCTCAGTCCGGTCCAATC
130 TGCTACCGATCCTGCTACCACAACCCTCAATCCGGTCCAAGC
* *
31210587 TTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
31210652 AGTCGGAGAGGCAGAATGCACAAACTGA-GGATCGGCCCGATCCCCCCATGCGTGCTGTCGATCC
66 GGTCGGAGAGGCAAAATGC-GAAACTCAGGGATCAGCCCGATCCCCCCCTGCGTGCTGCCGATCC
31210716 TGCT
130 TGCT
31210720 GTCGCAACCC
Statistics
Matches: 247, Mismatches: 54, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
171 241 0.98
172 6 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (171 bp):
TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGTCGGAGAGGCAAAATGCGAAACTCAGGGATCAGCCCGATCCCCCCCTGCGTGCTGCCGATCCT
GCTACCGATCCTGCTACCACAACCCTCAATCCGGTCCAAGC
Found at i:31210908 original size:159 final size:159
Alignment explanation
Indices: 31210565--31210945 Score: 410
Period size: 159 Copynumber: 2.4 Consensus size: 159
31210555 CCTGCTATTG
* * *
31210565 CAACCCTCAGTCCGG-TCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCATGA
1 CAACCCTCAGT-CGGATCCGAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
** *
31210629 AACGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCACAAACTGAGGATCGGCCCGATC
65 AACGAGCGTGCGGGCGCTCAGTCAGTCAAAGAGGCAGAATGCACAAACAGAGGATCGGCCCGATC
* * * *
31210694 CCCCCATGCGTGCTGTCGATCCTGCTGTCG
130 CCCCCATGCGTGCTGCCGATCCCGCTGCCA
* * * * * *
31210724 CAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTCAACCCATGAA
1 CAACCCTCAGTCGGATCCGAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * * * * *
31210789 ATGAGCGTGCGGGCGCTGAG-CTAGTCAAAGAGGCATAATGCATAAGCCAG-GGATCGGCCTGGT
66 ACGAGCGTGCGGGCGCTCAGTC-AGTCAAAGAGGCAGAATGCACAA-ACAGAGGATCGGCCCGAT
** *
31210852 CCCCCTTTGCGTGCTGCCGGTCCCGCTGCCA
129 CCCCCCATGCGTGCTGCCGATCCCGCTGCCA
* * * * * *
31210883 CAACCCTCGATTCGGCT-GGGGCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCCATG
1 CAACCCTC-AGTCGGATCCGAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATG
31210946 TCGGGGATCG
Statistics
Matches: 183, Mismatches: 35, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
158 3 0.02
159 173 0.95
160 7 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CAACCCTCAGTCGGATCCGAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
ACGAGCGTGCGGGCGCTCAGTCAGTCAAAGAGGCAGAATGCACAAACAGAGGATCGGCCCGATCC
CCCCATGCGTGCTGCCGATCCCGCTGCCA
Found at i:31211054 original size:26 final size:26
Alignment explanation
Indices: 31211025--31211077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31211015 CCGATCTGAT
31211025 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
31211051 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31211077 C
1 C
31211078 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31211424 original size:159 final size:158
Alignment explanation
Indices: 31211050--31211412 Score: 381
Period size: 158 Copynumber: 2.3 Consensus size: 158
31211040 AACTCCGTAT
* *
31211050 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * ** * * * *
31211115 CCTGTTAGAGAGGTAGAATGCACAAGCTGGGGATCGGCCTGATCCCTCCTGCGTGCTGTCGATCC
66 CCAATCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCC
* * *
31211180 TACTATCGCAACACTCAGTCTGGTCCGA
131 TACTACCACAACACTCAGTCCGGTCCGA
* * * * * * *
31211208 TCTTAGAC-TGGGAATGAACTTTGTATGACTAAGTCAACCAACAAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* *
31211272 GCCAATCAGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGTC-AG
65 GCCAATCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCC-CTGCATGCTGTCGA-
* * * ** *
31211336 T-CTCACTGCCACAACCCTCATTCCGGTTGGG
128 TCCT-ACTACCACAACACTCAGTCCGGTCCGA
* *
31211367 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
31211413 TGGGTGTGCG
Statistics
Matches: 162, Mismatches: 38, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 94 0.58
159 66 0.41
160 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAATCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCC
TACTACCACAACACTCAGTCCGGTCCGA
Found at i:31211703 original size:26 final size:26
Alignment explanation
Indices: 31211665--31211717 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31211655 GGCTCAAACT
31211665 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31211691 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
31211717 C
1 C
31211718 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31212059 original size:26 final size:26
Alignment explanation
Indices: 31212008--31212060 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31211998 CCAATCCAAT
*
31212008 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31212034 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
31212060 C
1 C
31212061 CTAAGTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31212246 original size:26 final size:26
Alignment explanation
Indices: 31212217--31212269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31212207 CTGATCCGAT
*
31212217 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
31212243 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
31212269 C
1 C
31212270 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:31212503 original size:158 final size:156
Alignment explanation
Indices: 31212243--31212744 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 156
31212233 ACTCCGTATG
* * *
31212243 CTTAGACATGGAATGAACTCCATATGCCGAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
** * * * * *
31212308 TGATCGGAGAGGCAGAATGCGTAAGCTAAGGACCGGCCCAGTCCCCCCTGTGTGTTGTTGATCCT
65 CAATCGGAGAGGCAGAATGCGCAAGC-CAGGATCGGCCCAGTCCCCCCTGTGTGCTGTCGATCCT
31212373 ACTGCCGCAACCCTCGATCTGATCTGAT
129 ACTGCCGCAACCCTCGATCTGATCTGAT
* * * * * *
31212401 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCATAAAATGAGCGTTCGGGCATTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGC
* * * * *
31212466 CAACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAATCCTCCTCTGCT-TGCTGTCGGTC
65 CAATCGGAGAGGCAGAATGCGCAAGCC-AGGATCGGCCCAGTCC-CCCCTG-TGTGCTGTCGATC
** * * * **
31212530 CCGCTGCCACAACCCTCGGTCTG-GCTGGGG
127 CTACTGCCGCAACCCTCGATCTGATCT-GAT
* * * * *
31212560 CTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGG-AGCTCAG
1 CTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCA-CTCAG
* * * * *
31212624 CCAGTCGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
64 CCAATCGGAGAGGCAGAATGCGCAAGCCA-GGATCGGCCCAGTCCCCCCTGTGTGCTGTCGATCC
** *
31212689 TACTATCGCAACCCTCGATCCGATCTGAT
128 TACTGCCGCAACCCTCGATCTGATCTGAT
31212718 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
31212745 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 148 0.54
159 120 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCC
AATCGGAGAGGCAGAATGCGCAAGCCAGGATCGGCCCAGTCCCCCCTGTGTGCTGTCGATCCTAC
TGCCGCAACCCTCGATCTGATCTGAT
Found at i:31212747 original size:26 final size:26
Alignment explanation
Indices: 31212718--31212770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31212708 CCGATCTGAT
31212718 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31212744 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31212770 C
1 C
31212771 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31213275 original size:159 final size:157
Alignment explanation
Indices: 31213112--31213419 Score: 343
Period size: 159 Copynumber: 1.9 Consensus size: 157
31213102 TCGGTCCGAT
* * * * *
31213112 CTTAGAC-TGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACAAG-TGTTCAGGCGCTGA
1 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCAAGAAACAAGATG-T-AGGCGCTCA
* * * *
31213175 GCCGATCGAAGAGGCATAATGCACAAGCCGGGGATC-AGCCCGGTCCCCCACTACGTGCTGCCGA
63 ACCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCGGTCCCCC-CTACGTGCTACCGA
31213239 TCCTACTGCCACAACCCTCGGTCCGACTGGGG
126 TCCTACTGCCACAACCCTCGGTCCGACTGGGG
* * ** *
31213271 CTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCAAGAAACGGGCATGTGGGCGCTCAAC
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCAAGAAACAAG-ATGTAGGCGCTCAAC
* * * * *
31213336 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGGTCCCTCCTGCGTGCTATCGATCCT
65 CGACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCCT
* **
31213401 GCTGCTGCAACCCTCGGTC
130 ACTGCCACAACCCTCGGTC
31213420 TAATCCGATC
Statistics
Matches: 123, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
158 31 0.25
159 87 0.71
160 3 0.02
161 2 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCAAGAAACAAGATGTAGGCGCTCAACC
GACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCCTA
CTGCCACAACCCTCGGTCCGACTGGGG
Found at i:31213399 original size:711 final size:709
Alignment explanation
Indices: 31211847--31213517 Score: 2069
Period size: 710 Copynumber: 2.4 Consensus size: 709
31211837 AGTCTGGCTA
* *
31211847 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTC
* * * * * *
31211912 AGCCGGTTGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTTGAT
66 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
* * *
31211977 CCTGTTGTCGCAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCTATATGCTTAGACT
131 CCTGCT-TCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
* * * * * * *
31212042 GGAGATGAACTCCGTATGCCTAAGTAAAGCCACGAAACGAGCGTGTGGGCACTCTACCGACAAGA
195 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGACAAGA
* * * * **
31212107 GAGGCCTACCGGAGAGGTAGAATACACAAGCTGGGGATCGGCCCGATCCCCCCTGTATGCTGTCG
260 GAGGCCGACCGGAGAGGTAGAATACACAAGCAGGGGATCGACCCGATCCCCCCTATATGCTACCG
* * * * * * *
31212172 ATCCTACTGCTGGTGCTGGTACCGTAAGCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTC
325 ATCCTACTACTGGTCCTGCTACCGTAAGCCTCGATCCGATCCGACCTTAGACTAGGAATGAACGC
* * *
31212237 CGTATGCTTAGACATGGAATGAACTCCATATGCCGAAGCCAACCCACGAAATGAGCGTGCGGGCA
390 CATATGCTTAGACATGGAATGAACTCCATATGCCGAAGCCAACCCACAAAATGAGCATGCGGGCA
* * ** * *
31212302 CTCAGCTGATCGGAGAGGCAGAATGCGTAAGCTAAGGACCGGCCCAGTCCCCCCTGTGTGTTGTT
455 CTCAACGGATCGGAGAGGCAGAATGCACAAGCTAAGGACCGACCCAGTCCCCCCTGTGTGCTGTT
* * *
31212367 GATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAA
520 GATCCTACTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATAAACTCCGTATACCTAA
* ** * * * *
31212432 GTCAACCCATAAAATGAGCGTTCGGGCATTGAGCCAACCGGAGAGGCATAATGCGCAAGCCGAGG
585 GTCAACCCACAAAACAAGCGTTCAGGCACTGAGCCAACCGAAGAGGCATAATGCACAAGCCGAGG
* * * * * * * * * *
31212497 ATCGGCCCAATCCTCCTCTGCTTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTG
650 ATCAGCCCAATCCCCCACTACGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCGACTG
* *
31212557 GGGCTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGAGCTC
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTC
* * * *
31212622 AGCC-AGTCGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGA
66 AGCCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGA
* * * *
31212686 TCCTACTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
130 TCCTGCT-TCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
* * * *
31212751 TGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACTAG-CTA
194 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC-AGACAA
* * * * * *
31212815 GAGAGGCCGACCGGAGAGGTAGAATGCACAGGCAGGGGATCGACTCGGTCCCCCCTATGTGTTAC
258 GAGAGGCCGACCGGAGAGGTAGAATACACAAGCAGGGGATCGACCCGATCCCCCCTATATGCTAC
* ** * *
31212880 CGATCCTGCTACTGGTCCTGCTGTCGTAA-CCTTCGATCCGGTCCGACCTTAGATTAGGAATGAA
323 CGATCCTACTACTGGTCCTGCTACCGTAAGCC-TCGATCCGATCCGACCTTAGACTAGGAATGAA
* ** * * *
31212944 CGCCATATTCTTAGATGTGGAATGAACTCCGTATGCCTAA-CCTAAGCCACAAAATGAGCATGCG
387 CGCCATATGCTTAGACATGGAATGAACTCCATATGCCGAAGCC-AACCCACAAAATGAGCATGCG
* * * * *
31213008 GGCGCTCAACGG-GCTGGAGAGGTAGAATGCACAAG-TCAGGGACCGACCCGGTCCCCACCTGTG
451 GGCACTCAACGGATC-GGAGAGGCAGAATGCACAAGCT-AAGGACCGACCCAGTCCCC-CCTGTG
* *
31213071 TGCTGTTGATCCTACTACCGCAACCCTCGAT-TCGGTCCGATCTTAGACTGGGAATAAACTTCGT
513 TGCTGTTGATCCTACTACCGCAACCCTCGATCT-GATCCGATCTTAGACTGGGAATAAACTCCGT
* * * * * *
31213135 ATGCCTAAGTCAACCCACGAAACAAGTGTTCAGGCGCTGAGCCGATCGAAGAGGCATAATGCACA
577 ATACCTAAGTCAACCCACAAAACAAGCGTTCAGGCACTGAGCCAACCGAAGAGGCATAATGCACA
* ** *
31213200 AGCCGGGGATCAGCCCGGTCCCCCACTACGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGA
642 AGCCGAGGATCAGCCCAATCCCCCACTACGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCGA
31213265 CTG
707 CTG
* * *
31213268 GGGCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCAAGAAACGGGCATGTGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTC
* * * * * *
31213333 AACCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGGTCCCTCCTGCGTGCTATCGAT
66 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
* * * *
31213398 CCTGCTGCTGCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACT
131 CCTGCTTC-GCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
* * * *
31213463 GAGGATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
195 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
31213518 GCCGACCGTA
Statistics
Matches: 812, Mismatches: 139, Indels: 19
0.84 0.14 0.02
Matches are distributed among these distances:
709 6 0.01
710 420 0.52
711 385 0.47
712 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (709 bp):
GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTC
AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
CCTGCTTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGACAAGAG
AGGCCGACCGGAGAGGTAGAATACACAAGCAGGGGATCGACCCGATCCCCCCTATATGCTACCGA
TCCTACTACTGGTCCTGCTACCGTAAGCCTCGATCCGATCCGACCTTAGACTAGGAATGAACGCC
ATATGCTTAGACATGGAATGAACTCCATATGCCGAAGCCAACCCACAAAATGAGCATGCGGGCAC
TCAACGGATCGGAGAGGCAGAATGCACAAGCTAAGGACCGACCCAGTCCCCCCTGTGTGCTGTTG
ATCCTACTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATAAACTCCGTATACCTAAG
TCAACCCACAAAACAAGCGTTCAGGCACTGAGCCAACCGAAGAGGCATAATGCACAAGCCGAGGA
TCAGCCCAATCCCCCACTACGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCGACTG
Found at i:31213479 original size:26 final size:26
Alignment explanation
Indices: 31213429--31213481 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31213419 CTAATCCGAT
**
31213429 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31213455 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
31213481 C
1 C
31213482 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31213838 original size:26 final size:26
Alignment explanation
Indices: 31213809--31213861 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31213799 CTGGTCCAAT
*
31213809 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31213835 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31213861 C
1 C
31213862 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31214194 original size:159 final size:158
Alignment explanation
Indices: 31213834--31214401 Score: 401
Period size: 159 Copynumber: 3.6 Consensus size: 158
31213824 AACTCTGTAT
* * * *
31213834 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * * **
31213899 CCGGTCAGAGAGGCAGAATGCTTAAGCCGGGGATCGACCCGGTCTCCC--CTACGTGTTGTC-GA
66 CC-GCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATC-CCCATCTACATGCTACCAG-
* ** * ** * * *
31213961 TCCTACTATCGCAACCCTCGGTCTG-GTCCGA
128 TCCCACTGCCACAACCCTCAATCCGACT-GGA
* * ** ** * *
31213992 TCTTAGAC-TGTGAATGAACTCAATATGCCTAAATCAACTCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACACG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * *
31214056 TCCAGCCGGAGAGGCATAATGTGCAAGTCGAGGATCGACTTGATCCCTATCTACTTGCTGCC-GA
65 GCC-GCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCATCTACATGCTACCAG-
* *
31214120 TCTCGCTGCCACAACCCTCAATCCGACTGGA
128 TCCCACTGCCACAACCCTCAATCCGACTGGA
* * * *
31214151 GCTTAGACACGGAATGAACTCCCTATGCCTCAGCTAACCCACGAAAGGAGTGTGCGGGCGCTCAG
1 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
31214216 CTGGTCGGAGAGGTAGAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCAGTC
66 C-CGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCATCTACATGCTACCAGTC
** ** *
31214281 CCACTGCCACAACCCTCGGTCCGGTTGGG
130 CCACTGCCACAACCCTCAATCCGACTGGA
* * ** * * *
31214310 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCGAGCGCTTAG
1 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
31214375 CCGACCGGAGAGGCAAAATGCACAAGC
66 CCG-CCGGAGAGGCAAAATGCGCAAGC
31214402 TAGGGATCAG
Statistics
Matches: 313, Mismatches: 89, Indels: 15
0.75 0.21 0.04
Matches are distributed among these distances:
157 4 0.01
158 85 0.27
159 221 0.71
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCATCTACATGCTACCAGTCC
CACTGCCACAACCCTCAATCCGACTGGA
Found at i:31214510 original size:26 final size:26
Alignment explanation
Indices: 31214469--31214521 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31214459 CCGATCTAAT
31214469 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31214495 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
31214521 C
1 C
31214522 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31215492 original size:26 final size:26
Alignment explanation
Indices: 31215463--31215515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31215453 CTGGTCCGAT
*
31215463 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31215489 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31215515 C
1 C
31215516 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31215701 original size:26 final size:26
Alignment explanation
Indices: 31215672--31215722 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
31215662 CCGGTTCGGT
31215672 CTTAGAC-TAGAAATGAAATCCGTATA
1 CTTAGACAT-GAAATGAAATCCGTATA
* *
31215698 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGAAATGAAATCCGTAT
31215723 GCCTAAGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (26 bp):
CTTAGACATGAAATGAAATCCGTATA
Found at i:31216208 original size:26 final size:26
Alignment explanation
Indices: 31216172--31216224 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31216162 CTGATCCAAT
*
31216172 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31216198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31216224 C
1 C
31216225 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31216589 original size:26 final size:26
Alignment explanation
Indices: 31216551--31216601 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31216541 CTGATCTAAT
31216551 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
31216577 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
31216602 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:31217049 original size:26 final size:26
Alignment explanation
Indices: 31217020--31217072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31217010 CCAGTCTGAT
*
31217020 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31217046 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31217072 C
1 C
31217073 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31217342 original size:158 final size:156
Alignment explanation
Indices: 31217046--31218005 Score: 561
Period size: 158 Copynumber: 6.2 Consensus size: 156
31217036 ACTCTGTATG
* * *
31217046 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGT-GTGCGGGTGCTTAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA-TCGTGCGGGCGCTCAG
* * * ** *
31217110 TCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGTTCC
65 TC-AGCCGAGAGGCATAATGCGCAAGTCGGGGATCGGCCC-GTCCCCCCTGCGTGCTACCGATCC
* *
31217175 TGTTGCCACAACCCTCGGTCTGGTCTGAT
128 TGCTGCCACAACCCTCGGTCCGGTCTGAT
** * * * *
31217204 CTTAGACTGGGAATGAACTCCGTATGTATAAGTCAACCCACGAAATGATCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGATCGTGCGGGCGCTCAGT
* * * *
31217269 CAGCCGAAGAGGCATAATGGGCAAGTTGGGGATCGGCCCAGTCCCCCTTGCGTGCTACCGATCCC
66 CAGCCG-AGAGGCATAATGCGCAAGTCGGGGATCGGCCC-GTCCCCCCTGCGTGCTACCGATCCT
* ** **
31217334 GCTACCACAACCCTCAATCCGG-CTGGGG
129 GCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * **
31217362 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGATCGTGCGGGCGCTCAG
* * * * *
31217426 TCAGCCTGAGAGGC-TGAATGCACAAGCCGGGGATCAGCTCGATCCCCCCTGTGTGCTACCGATC
65 TCAGCC-GAGAGGCAT-AATGCGCAAGTCGGGGATCGGCCCG-TCCCCCCTGCGTGCTACCGATC
* * * *
31217490 TTGCTGCCCCAACCCTCGGTCCAGTCTAAT
127 CTGCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * * ***
31217520 CTTAGACTGGGAATGAACTTCGTATG-CTTAG---A--CATGGAATGAAC-TCCGTATGC-C--T
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGATCGTGCGGGCGCTCAGT
* ** * * * * * * **
31217575 AAGCC-A-ACCCATGAA-ACG-AGCGTGCAGGGATTGGCCCGGTCCCCTCTACGTGCTGTCGATC
66 CAGCCGAGAGGCAT-AATGCGCA-AGT-CGGGGATCGGCCC-GTCCCCCCTGCGTGCTACCGATC
* * * *
31217636 CTGCTACTACAACCCTCAGTCCGATCTGAT
127 CTGCTGCCACAACCCTCGGTCCGGTCTGAT
** * * * *
31217666 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGT-GTGCGGTCGTTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA-TCGTGCGGGCGCTCAG
* * * * * **
31217730 CCGGTCGGAGAGGCATAATACGCAAGCCGGGGATC-GCTCCGGTCCCCCTCTGCGTGCTGTC-AG
65 TCAG-CCGAGAGGCATAATGCGCAAGTCGGGGATCGGC-CC-GTCCCCC-CTGCGTGCTACCGA-
* * **
31217793 TCCCGCTGCCACAACCCTCTGTCCGGT-TGGGG
125 TCCTGCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * * *** *
31217825 CTTAGACAT-GGAATGAACTCC----GCCTAAGCCAACCCACGAAACGAGCGTGCGATAGCTCGG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGATCGTGCGGGCGCTCAG
* * * * * * * * * * * * * *
31217885 CCGATCGGAGACGCAGAATGTGTAAGCCAGGGATCGACCCAGTTCCCCCTGCATGCTGCCAATCC
65 TC-AGCCGAGAGGCATAATGCGCAAGTCGGGGATCGGCCC-GTCCCCCCTGCGTGCTACCGATCC
* * *
31217950 TGCTGCCGCAACCCTCCGTCCGATCTGAT
128 TGCTGCCACAACCCTCGGTCCGGTCTGAT
*
31217979 CTTAGACTGCGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
31218006 TTGGATGTTG
Statistics
Matches: 608, Mismatches: 150, Indels: 88
0.72 0.18 0.10
Matches are distributed among these distances:
144 1 0.00
145 4 0.01
146 76 0.12
147 5 0.01
148 5 0.01
150 2 0.00
151 5 0.01
152 16 0.03
153 5 0.01
154 53 0.09
155 66 0.11
156 2 0.00
157 16 0.03
158 286 0.47
159 64 0.11
160 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGATCGTGCGGGCGCTCAGT
CAGCCGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGTCCCCCCTGCGTGCTACCGATCCTGC
TGCCACAACCCTCGGTCCGGTCTGAT
Found at i:31217558 original size:26 final size:26
Alignment explanation
Indices: 31217520--31217572 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31217510 CCAGTCTAAT
*
31217520 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31217546 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31217572 C
1 C
31217573 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31218000 original size:154 final size:154
Alignment explanation
Indices: 31217644--31218000 Score: 362
Period size: 155 Copynumber: 2.3 Consensus size: 154
31217634 TCCTGCTACT
* *
31217644 ACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGA
1 ACAACCCTCAGTCCGATCTGATCTTAGACT-GGAATGAACTC----CGCCTAAGCCAACCCACGA
* * * * * * * * * *
31217709 AATGAGTGTGCGGTCGTTGAGCCGGTCGGAGAGGCATAATACGCAAGCCGGGGATCGCTCCGGTC
61 AACGAGCGTGCGATAGTCGAGCCGATCGGAGACGCAGAATACGCAAGCCAGGGATCGCTCCAGTC
* * *
31217774 CCCCTCTGCGTGCTGTCAGTCCCGCTGCC
126 CCCCTCTGCATGCTGCCAATCCCGCTGCC
* * **
31217803 ACAACCCTCTGTCCGGT-TGGGGCTTAGACATGGAATGAACTCCGCCTAAGCCAACCCACGAAAC
1 ACAACCCTCAGTCCGATCT-GATCTTAGAC-TGGAATGAACTCCGCCTAAGCCAACCCACGAAAC
** * *
31217867 GAGCGTGCGATAGCTCG-GCCGATCGGAGACGCAGAATGTGTAAGCCAGGGATCGAC-CCAGTTC
64 GAGCGTGCGATAG-TCGAGCCGATCGGAGACGCAGAATACGCAAGCCAGGGATCG-CTCCAGTCC
*
31217930 CCC-CTGCATGCTGCCAATCCTGCTGCC
127 CCCTCTGCATGCTGCCAATCCCGCTGCC
* *
31217957 GCAACCCTCCGTCCGATCTGATCTTAGACTGCGAATGAACTCCG
1 ACAACCCTCAGTCCGATCTGATCTTAGACTG-GAATGAACTCCG
31218001 TATGCTTGGA
Statistics
Matches: 163, Mismatches: 29, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
153 2 0.01
154 54 0.33
155 68 0.42
156 3 0.02
158 1 0.01
159 34 0.21
160 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (154 bp):
ACAACCCTCAGTCCGATCTGATCTTAGACTGGAATGAACTCCGCCTAAGCCAACCCACGAAACGA
GCGTGCGATAGTCGAGCCGATCGGAGACGCAGAATACGCAAGCCAGGGATCGCTCCAGTCCCCCT
CTGCATGCTGCCAATCCCGCTGCC
Found at i:31218052 original size:459 final size:459
Alignment explanation
Indices: 31217147--31218058 Score: 1093
Period size: 459 Copynumber: 2.0 Consensus size: 459
31217137 CGGGGATCGA
* * * * * * *
31217147 CCCGGTCCCCCCTGCGTGCTGTCGTTCCTGTTGCCACAACCCTCGGTCTGGTCTGATCTTAGACT
1 CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGATCTGATCTTAGACT
* *
31217212 GGGAATGAACTCCGTATGTATAAGTCAACCCACGAAATGATCGTGCGGGCACTGAGCCAGCCGAA
66 GGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGATCGTGCGGGCACTGAGCCAGCCGAA
** ** *
31217277 GAGGCATAATGGGCAAGTTGGGGATCGGCCCAGTCCCCCTTGCGTGCTACCGATCCCGCTACCAC
131 GAGGCATAATACGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTACAGATCCCGCTACCAC
*
31217342 AACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATGAAA
196 AACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCC---TGCCTAAGCCAACACACGAAA
* * * * * * * * *
31217407 CGGGCGTGCGGGCGCTCAGTCAGCCTGAGAGGCTGAATGCACAAGCCGGGGATCAGCTCGATCCC
258 CGAGCGTGCGAGAGCTCAGCCAGCCGGAGACGCAGAATGCACAAGCCAGGGATCAGCCCGATCCC
** * * * *
31217472 CCCTGTGTGCTACCGATCTTGCTGCCCCAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATGAA
323 CCCTGCATGCTACCAATCCTGCTGCCCCAACCCTCCGTCCAGTCTAATCTTAGACTGCGAATGAA
* * *
31217537 CTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAG
388 CTCCGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG
31217602 GGATTGG
453 GGATTGG
* *
31217609 CCCGGTCCCCTCTACGTGCTGTCGATCCTGCTACTACAACCCTCAGTCCGATCTGATCTTAGACT
1 CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGATCTGATCTTAGACT
* * * ** * * *
31217674 GGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGT-GTGCGGTCGTTGAGCCGGTCGG
66 GGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGA-TCGTGCGGGCACTGAGCCAGCCGA
* * *
31217738 AGAGGCATAATACGCAAGCCGGGGATC-GCTCCGGTCCCCCTCTGCGTGCTGTCAG-TCCCGCTG
130 AGAGGCATAATACGCAAGCCGGGGATCGGC-CCAGTCCCCCT-TGCGTGCT-ACAGATCCCGCTA
** * *
31217801 CCACAACCCTCTGTCCGGTTGGGGCTTAGACATGGAATGAACTCC-GCCTAAGCCAACCCACGAA
192 CCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCTGCCTAAGCCAACACACGAA
* * * ***
31217865 ACGAGCGTGCGATAGCTCGGCC-GATCGGAGACGCAGAATGTGTAAGCCAGGGATC-GACCC-AG
257 ACGAGCGTGCGAGAGCTCAGCCAG-CCGGAGACGCAGAATGCACAAGCCAGGGATCAG-CCCGA-
* * * *
31217927 TTCCCCCTGCATGCTGCCAATCCTGCTGCCGCAACCCTCCGTCC-GATCTGATCTTAGACTGCGA
319 TCCCCCCTGCATGCTACCAATCCTGCTGCCCCAACCCTCCGTCCAG-TCTAATCTTAGACTGCGA
* ** *
31217991 ATGAACTCCGTATGCTTGGATGTTGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCG
383 ATGAACTCCGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCG
31218056 TGC
448 TGC
31218059 GTGCACTAAC
Statistics
Matches: 378, Mismatches: 64, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
458 4 0.01
459 171 0.45
461 2 0.01
462 141 0.37
463 58 0.15
464 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (459 bp):
CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGATCTGATCTTAGACT
GGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGATCGTGCGGGCACTGAGCCAGCCGAA
GAGGCATAATACGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTACAGATCCCGCTACCAC
AACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCTGCCTAAGCCAACACACGAAACGA
GCGTGCGAGAGCTCAGCCAGCCGGAGACGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCC
TGCATGCTACCAATCCTGCTGCCCCAACCCTCCGTCCAGTCTAATCTTAGACTGCGAATGAACTC
CGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGA
TTGG
Found at i:31224154 original size:159 final size:159
Alignment explanation
Indices: 31223792--31224182 Score: 414
Period size: 159 Copynumber: 2.5 Consensus size: 159
31223782 ATCGGCTCGG
* * * * *
31223792 TCCCCCTTGGGTGCTATCGATCCCACTACCGCAACCCTTAGTCCAG-TGCGATCTTAGACTAGGA
1 TCCCCCCTGCGTGTTATCGATCCCACTACCGCAACCCTTAGTCCGGTTGCGAGCTTAGACTAGGA
* * * * * *
31223856 ATGAACTCCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGTGCTGAGCCAACCGAAGAGG
66 ATGAACTCCCTATGCATAAGCCAACCCACGAAACGAACATGCGGGCGCTCAGCCAACCGAAGAGG
* *
31223921 CATAATGCACAAGCCGAGGATCGACCCGG
131 CAAAATGCACAAGCCGAGGATCGACCCGA
* * * * * * * *
31223950 TCCCCCTCTGTGTGTT-GCCAGTCCCGCTACCACAATCCTTGGTCCGGTTG-GGGCTTAGAC-AT
1 TCCCCC-CTGCGTGTTATCGA-TCCCACTACCGCAACCCTTAGTCCGGTTGCGAGCTTAGACTA-
* * * *
31224012 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCAGCCGAAA
63 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAACATGCGGGCGCTCAGCCAACCG-AA
**
31224077 GAGGCAAAATGTGCAAGCCGAGGATCGACCCGA
127 GAGGCAAAATGCACAAGCCGAGGATCGACCCGA
* * * * * *
31224110 TCCCCCCTGCGTGTTATCGATCCTACTACCGCAACCCTCAGTCCGG-TCCAATCTTAGACTGGGA
1 TCCCCCCTGCGTGTTATCGATCCCACTACCGCAACCCTTAGTCCGGTTGCGAGCTTAGACTAGGA
31224174 ATGAACTCC
66 ATGAACTCC
31224183 ATATACTTAG
Statistics
Matches: 185, Mismatches: 40, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
158 10 0.05
159 134 0.72
160 41 0.22
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (159 bp):
TCCCCCCTGCGTGTTATCGATCCCACTACCGCAACCCTTAGTCCGGTTGCGAGCTTAGACTAGGA
ATGAACTCCCTATGCATAAGCCAACCCACGAAACGAACATGCGGGCGCTCAGCCAACCGAAGAGG
CAAAATGCACAAGCCGAGGATCGACCCGA
Found at i:31225591 original size:26 final size:26
Alignment explanation
Indices: 31225555--31225607 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31225545 CCAATCTGAT
*
31225555 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31225581 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31225607 C
1 C
31225608 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31225963 original size:26 final size:26
Alignment explanation
Indices: 31225934--31225986 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31225924 CCGGTCTGAT
31225934 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
31225960 CTTAGTCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31225986 C
1 C
31225987 CTAAGCCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31227197 original size:26 final size:26
Alignment explanation
Indices: 31227159--31227211 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31227149 CCCTCAAAAT
31227159 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31227185 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31227211 C
1 C
31227212 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31227539 original size:26 final size:26
Alignment explanation
Indices: 31227503--31227555 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31227493 CCGGTCCGAT
* *
31227503 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31227529 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31227555 C
1 C
31227556 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31229310 original size:159 final size:157
Alignment explanation
Indices: 31228946--31229448 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 157
31228936 AACTCCGTAT
31228946 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
31229011 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCT
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC
* ***
31229076 TGCTATTGCAACCCTCGGTCTGGTCTGA
131 CGCTA-TGCAACCCTCGGTCTCAACTGA
* * * * * *
31229104 TCTTCGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** *
31229168 GCCGGCCAGG-GAGGCATATTGCGTAAGCCGGGGATCAGCTCGGTCCGCCTTTGTGTGCTATCGA
65 GCCGACC-GGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCC-CCCCTGCGTGCTATCGA
*
31229232 TCCCGC-A-GCCATAGCCCTCGGTC-CAACTAGG
128 TCCCGCTATG-CA-A-CCCTCGGTCTCAACT-GA
* *
31229263 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * ***
31229328 CCGATCGGAAAGGCAGAATGTGCAAGTTGGGGATCGGCCCGGTCCCCCCTACGTGCGGCCGATCC
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * * * *
31229393 TGCTGCTACATCCCTTGGTC-CAATCTGA
131 CGCT-ATGCAACCCTCGGTCTCAA-CTGA
*
31229421 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31229449 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 55, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 4 0.01
158 151 0.55
159 117 0.42
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC
CGCTATGCAACCCTCGGTCTCAACTGA
Found at i:31229458 original size:26 final size:26
Alignment explanation
Indices: 31229422--31229474 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31229412 CCAATCTGAT
*
31229422 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
31229448 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
31229474 C
1 C
31229475 GTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:31236294 original size:158 final size:157
Alignment explanation
Indices: 31235974--31236334 Score: 361
Period size: 158 Copynumber: 2.3 Consensus size: 157
31235964 GGCTCAAAAT
31235974 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAGC
* * * * * * * *
31236039 CGATCGGAGAGGCAGAATAAGCAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTATCAATCCT
66 CAACCGAAGAGGCAGAAT-AGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTACCAATCCC
* * *
31236104 GCTATCGCAACCCTCGGTCCGATCCGAT
130 GCTACCACAACCCTCGGTCCGATCCGAG
* * * * * *
31236132 CTTAGA-TTGGGAATGAACTCTGTATGCTTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAG
* * * ** **
31236196 CCAACCGAAGAGGTATAAT-GCATAAG-CAGGGGATCGACCCGGTCCCCTTTACGTGCTACCGGT
65 CCAACCGAAGAGGCAGAATAGC--AAGCCA-GGGATCGACCCGATCCCCCCTACGTGCTACCAAT
* * *
31236259 CCCGCTGCCACAACCCTCGGTCCGA-CTGGGG
127 CCCGCTACCACAACCCTCGGTCCGATC-CGAG
* * * *
31236290 CTTAGACATGGAATGAACTCCCTATCCCTATGCCAACCCATGAAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
31236335 CGGGTGTGCG
Statistics
Matches: 163, Mismatches: 34, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 4 0.02
158 156 0.96
159 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAGC
CAACCGAAGAGGCAGAATAGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTACCAATCCCG
CTACCACAACCCTCGGTCCGATCCGAG
Found at i:31236489 original size:26 final size:26
Alignment explanation
Indices: 31236448--31236500 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31236438 CTGGTCCGAT
31236448 CTTAGACTAGGAATGAACCTCGTATG
1 CTTAGACTAGGAATGAACCTCGTATG
* * *
31236474 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACCTCGTATG
31236500 C
1 C
31236501 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCTCGTATG
Found at i:31242507 original size:26 final size:26
Alignment explanation
Indices: 31242469--31242518 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
31242459 ATCTGATCTT
31242469 AGACTGGGAATGAACTCCATATGCAA
1 AGACTGGGAATGAACTCCATATGCAA
*
31242495 AGACTGGGGATGAACTCCATATGC
1 AGACTGGGAATGAACTCCATATGC
31242519 CTAAGTCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCAA
Found at i:31243369 original size:26 final size:26
Alignment explanation
Indices: 31243333--31243385 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31243323 CAAGTCTGAT
*
31243333 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
31243359 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31243385 C
1 C
31243386 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31244426 original size:158 final size:158
Alignment explanation
Indices: 31244056--31244556 Score: 397
Period size: 158 Copynumber: 3.2 Consensus size: 158
31244046 GGCTCAAAAT
* *
31244056 CTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
*** * * * * **
31244121 CGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGATCCCCCTTGCGTGCTGTCGATCCT
66 CAACCGAAGAGGCAGAATGCATAAGCCAGGGATCGACCCGATCCCCCTTGCGTGCTACCGATCCT
* *
31244186 GCTGCCGCAACCCTCGGTCCAATCCGAT
131 GCTGCCACAACCCTCGGTCCAATCCGAG
* * * * *
31244214 CTTAGAC-TGGGAATGAACTCCGTAAGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
31244278 CCAACCGAAGAGGTATAATGCATAAG-CAGGGGATCGACCCGGT-CCCCTCTGCGTGCTACCGGT
65 CCAACCGAAGAGGCAGAATGCATAAGCCA-GGGATCGACCCGATCCCCCT-TGCGTGCTACCGAT
* * * *
31244341 -CTCGCTGCCACAACCCTTGGTCC-AGCTGGGG
128 CCT-GCTGCCACAACCCTCGGTCCAATC-CGAG
* * * * * **
31244372 CTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** *** * * * * **
31244437 CGGCC-AGAGAGGCAGAATGTGCAAGCTAGGGATCGGCCCGGTCCCTCC-TACGTGCTGTCGATC
66 CAACCGA-AGAGGCAGAATGCATAAGCCAGGGATCGACCCGATCCC-CCTTGCGTGCTACCGATC
* * * ** * * *
31244500 CTGATGTCTCAACCCTTAGTTCGATCCGAT
129 CTGCTGCCACAACCCTCGGTCCAATCCGAG
*
31244530 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
31244557 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 14 0.05
158 243 0.91
159 8 0.03
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CAACCGAAGAGGCAGAATGCATAAGCCAGGGATCGACCCGATCCCCCTTGCGTGCTACCGATCCT
GCTGCCACAACCCTCGGTCCAATCCGAG
Found at i:31244559 original size:26 final size:26
Alignment explanation
Indices: 31244530--31244582 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31244520 TCGATCCGAT
*
31244530 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
31244556 CTTAGACTGGGGATGCACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31244582 C
1 C
31244583 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31244803 original size:343 final size:342
Alignment explanation
Indices: 31244214--31245120 Score: 1077
Period size: 343 Copynumber: 2.6 Consensus size: 342
31244204 CCAATCCGAT
* * *
31244214 CTTAGACTGGGAATGAACTCCGTAAGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * * * * * *
31244279 CAACCGAAGAGGTATAATGCATAAGCAGGGGATCGACCCGGT-CCCCTCTGCGTGCTACCGGTCT
66 CGACCGAAGAGGCATAATGCGTAAGCCGGGGATC-AGCCGATCCCCCTCTGTGTGCTACCGGTCC
*
31244343 CGCTGCCACAACCCTTGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCA
130 CGCTGCCACAACCCTTGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* ** * *
31244407 ACCCATGAAACGGGTGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGTGCAAGCTAGGGATCG
194 ACCCACGAAACGGGCATGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCG
* * *
31244472 GCCCGGTCCCTCCTACGTGCTGTCGATCCTGA-TGTC-TCAACCCTTAGTTCGA-TCCGATCTTA
259 GCCCGGTCCCTCCTACGTGCTGCCGATCCT-ACTGTCGT-AACCC-TAGATCCAGTCCGATCTTA
* *
31244534 GATTGGGAATGAACTCCGTATG
321 GACTGGGAATGAACTCCATATG
* * * * *
31244556 CTTAGACTGGGGATGCACTTCGTATGCATAAGTCAACCCACGAAATGAGGGTACGAGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
** * *
31244621 CGATTGAAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGATCCCCCTCTGTGTACTATCGGTCC
66 CGACCGAAGAGGCATAATGCGTAAGCCGGGGATCAGC-CGATCCCCCTCTGTGTGCTACCGGTCC
** *
31244686 CGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAA
130 CGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * **
31244751 CCCACGAAATGGGCATGCGGGCACTTAGCCAGCTGGAGAGGCAGAATGTGCAAGCCAGGGATCGG
195 CCCACGAAACGGGCATGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGG
* * *
31244816 CCCGGTCCCTCTTACGTGCTGCCGATCCTACTGTCGTAACCCTCGATCCAGTCTGATCTTAGACT
260 CCCGGTCCCTCCTACGTGCTGCCGATCCTACTGTCGTAACCCTAGATCCAGTCCGATCTTAGACT
*
31244881 GGGAATGAACTCCATGTG
325 GGGAATGAACTCCATATG
* * * * * ** * *
31244899 CTTCGACTGGGGATGAACTCCATATGCCTAAGTCCACCCATGAAATTTGCGTGCGGGCTCTTAGC
1 CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * *
31244964 CGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGGCCGATCCCCTTCTGGTGCTGTCGATCCC
66 CGACCGAAGAGGCATAATGCGTAAGCCGGGGATCA-GCCGATCCCC--C---T-CTGT-G-T---
* * * *
31245029 GCTACCAGTCCTGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
119 GCTACCGGTCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
*
31245094 GCCTAAGCCAACCCACGAAACGAGCAT
184 GCCTAAGCCAACCCACGAAACGGGCAT
31245121 ACGGACGCTC
Statistics
Matches: 474, Mismatches: 73, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
341 2 0.00
342 94 0.20
343 285 0.60
344 4 0.01
345 1 0.00
348 1 0.00
349 4 0.01
350 1 0.00
351 1 0.00
354 81 0.17
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
CGACCGAAGAGGCATAATGCGTAAGCCGGGGATCAGCCGATCCCCCTCTGTGTGCTACCGGTCCC
GCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCATGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGGC
CCGGTCCCTCCTACGTGCTGCCGATCCTACTGTCGTAACCCTAGATCCAGTCCGATCTTAGACTG
GGAATGAACTCCATATG
Found at i:31245269 original size:26 final size:26
Alignment explanation
Indices: 31245240--31245290 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31245230 CCAGTCTGAT
31245240 CTTAGAC-TGGGAATGAACTCTGTATC
1 CTTAGACAT-GGAATGAACTCTGTATC
31245266 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCTGTAT
31245291 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATC
Found at i:31245767 original size:26 final size:26
Alignment explanation
Indices: 31245731--31245781 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31245721 CAAGTCTGAT
*
31245731 CTTAGACTGGGAATGAACTTCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
31245757 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
31245782 GCCAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:31246489 original size:26 final size:26
Alignment explanation
Indices: 31246451--31246503 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31246441 GGCTCAAAAT
**
31246451 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
31246477 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
31246503 C
1 C
31246504 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:31246809 original size:158 final size:156
Alignment explanation
Indices: 31246477--31246977 Score: 578
Period size: 158 Copynumber: 3.2 Consensus size: 156
31246467 ACTCCATATG
*
31246477 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
31246542 CGGCTGGAGAAGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCT
65 CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * * ** *
31246607 GCTGCCATAACCCTTGGTCTGGTCCGAT
130 GCTGTCACAACCCTCGGTCCAG-CTGAT
* * * * * *
31246635 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAATCCA-AAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
31246699 TGACTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCC
65 CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * *
31246764 CGCTGTCGCAAGCCTCGGTCCAGCTGGGA-
129 TGCTGTCACAACCCTCGGTCCAGCT--GAT
* *
31246793 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGAGTGCGGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGA-GCGTGCGGGCGCTCA
* * * * *
31246856 GCCGGCCGGAGAGGCAGAATGCGCAGGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
63 GCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
31246921 CTGCTGTCTCATCCCTCGATCCAGTCTGAT
128 CTGCTGTCACAACCCTCGGTCCAG-CTGAT
31246951 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
31246978 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 48, Indels: 20
0.81 0.14 0.06
Matches are distributed among these distances:
157 64 0.22
158 156 0.55
159 65 0.23
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGTCACAACCCTCGGTCCAGCTGAT
Found at i:31246989 original size:26 final size:26
Alignment explanation
Indices: 31246951--31247003 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31246941 CCAGTCTGAT
31246951 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
31246977 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31247003 C
1 C
31247004 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31247442 original size:26 final size:26
Alignment explanation
Indices: 31247412--31247463 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31247402 GCTCAAAATA
*
31247412 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATAAACTCCATATGC
*
31247438 TTAGACATGGAATAAACTCCGTATGC
1 TTAGACATGGAATAAACTCCATATGC
31247464 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATAAACTCCATATGC
Found at i:31247781 original size:159 final size:158
Alignment explanation
Indices: 31247436--31247875 Score: 480
Period size: 159 Copynumber: 2.8 Consensus size: 158
31247426 AACTCCATAT
* * *
31247436 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
31247501 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTTGATC
66 -CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGCCCCGATCCCCCCCAGCGTGCTGTCGATC
* * * *
31247566 TTGCTGTCGTAACCCTCGATCTAGTTTGA
130 TTGCTGCCGTAACCCTCGATCGAGCTAGA
* * * * * *
31247595 TCTTAAAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
31247659 GCCGACCGAAGAGGCATAATACGCAAGCCGATGATCGCCCCGATCCCCCTCAGCGTGCTGTCGGT
65 G-CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGCCCCGATCCCCCCCAGCGTGCTGTCGAT
* *
31247724 C-TGCTGCCGCATAACCCTTGATCCGA-CTAGG
129 CTTGCTGCCG--TAACCCTCGAT-CGAGCTAGA
31247755 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * * *
31247818 GCGGCCGGAGAGGCAGAATGCGCAGGCCGAGGGATC-ACCCGGT-CCCCCCTGCGTGCTG
65 GCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGCCCCGATCCCCCCCAGCGTGCTG
31247876 CCATCCTGCT
Statistics
Matches: 231, Mismatches: 43, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
157 13 0.06
158 38 0.16
159 147 0.64
160 30 0.13
161 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGCCCCGATCCCCCCCAGCGTGCTGTCGATCT
TGCTGCCGTAACCCTCGATCGAGCTAGA
Found at i:31247926 original size:960 final size:958
Alignment explanation
Indices: 31246059--31248099 Score: 3183
Period size: 962 Copynumber: 2.1 Consensus size: 958
31246049 TTTTTGTCCC
* * *** ** *
31246059 CAAATTTGGTAGAGGTGATCCCTGTATTTTTTTTCACATGTGCAAAAAACTTCAGCTAAAAACTC
1 CAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
31246124 GAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTGC
66 GAAGTGGAGAAGATTTTGTGACCGTTTGACAAAAGTGTCCCCATTACA-ACACTTTAATGGCTAC
* *
31246189 TGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAA
130 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAA
*
31246254 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
195 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCC
*
31246319 GGCCCCCAATCACCGGAACCCCCAATGCCATCGGTTAGGCTCTCTGGTGATGCTCCGACGATGGT
260 GGCCCCCAATCACCGGAACCCCCAATGCCATCGGTTAGGCTCTCTGGCGATGCTCCGACGATGGT
* *
31246384 GCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAA
325 GCCCCGGGCGAAAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAA
* *
31246449 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
390 ATATTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAAC
* * * *
31246514 CTACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAAGCAGAATGCGCAAGCTGGGGATCGAC
455 CCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAAGCAGAATGCGCAAGCTGGGGATCGAC
* * * * * * *
31246579 CTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCATAACCCTTGGTCTGGTCCGATCTTAGACTG
520 CCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGATCTAGTCCGATCTTAAACTA
* * * * * *
31246644 GGAATGAACTCTGTATGCCTAAGTCAATCCAAAAACGAGCGTGCGGGCACTGAGCTGACTGGAGA
585 GGAATGAACTCCGTATGCATAAGTCAACCCAAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGA
* * * * * *
31246709 GGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGTCGCA
650 GGCATAATACGCAAGCCGAGGATCGCCCCGATCCCCCTCAGCGTGCTGTCGGTCCCGCTGCCGCA
* *
31246774 AGCCTCGGTCCAGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
715 ACCCTCGATCCAGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
*
31246839 AGGAGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAGGCCGAGGATCGGCCCGATCCCC
780 AGGAGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAGGCCGAGGATCGACCCGATCCCC
31246904 CCTGCGTGCTGCCGATCCTGCTGTCTCATCCCTCGATCCAGTCTGATCTTAGACTAGGAATGAAC
845 CCTGCGTGCTGCCGATCCTGCTGTCTCATCCCTCGATCCAGTCTGATCTTAGACTAGGAATGAAC
*
31246969 TCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
910 TCCGGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
31247017 CAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTC
1 CAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTC
31247082 GAAGTGGAGAAGATTTTGTGACCGTTTGACAAAAGTGTCCCCATTACAACACTTTAATGGCTACT
66 GAAGTGGAGAAGATTTTGTGACCGTTTGACAAAAGTGTCCCCATTACAACACTTTAATGGCTACT
31247147 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAAG
131 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAAG
* *
31247212 GATAGGGGGCTAATATAAGGGCCAAGTACTAGCAACCATCGCACATCATGTGCGCACACCCCCCG
196 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCG
*
31247277 GCCCCCCCAATCACCGGAACCCCCAATGCCGTCGGTTAGGCTCTCTGGCGATGCTCCCG-CGATG
261 G--CCCCCAATCACCGGAACCCCCAATGCCATCGGTTAGGCTCTCTGGCGATGCT-CCGACGATG
* *
31247341 GTGCCCTGGGCGAAAAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTC
323 GTGCCCCGGGCG-AAAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCTC
*
31247406 AAAATATTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCC
387 AAAATATTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCC
* * *
31247471 AACCCACGAAACGAGCGTACGGGTGCTCAGTCGACCGGAGAGGCAGAATGCGCAAG-TCGGGGAT
452 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAAGCAGAATGCGCAAGCT-GGGGAT
* * * * * **
31247535 CGGCCCGATCCCCCCCTGCGTGCTGTTGATCTTGCTGTCGTAACCCTCGATCTAGTTTGATCTTA
516 CGACCCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGATCTAGTCCGATCTTA
*
31247600 AACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGAC
580 AACTAGGAATGAACTCCGTATGCATAAGTCAACCCA-AAAACGAGCGTGCGGGCACTGAGCCGAC
* *
31247665 CGAAGAGGCATAATACGCAAGCCGATGATCGCCCCGATCCCCCTCAGCGTGCTGTCGGT-CTGCT
644 CGAAGAGGCATAATACGCAAGCCGAGGATCGCCCCGATCCCCCTCAGCGTGCTGTCGGTCCCGCT
*
31247729 GCCGCATAACCCTTGATCC-GACTAGGG-CTTAGACATGGAATGAACT-CCTATGCCTAAGCCAA
709 GCCGC--AACCCTCGATCCAG-CT-GGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
31247791 CCCACGAAAC-GGACGTGCGGGCGCTCAG-CGGCCGGAGAGGCAGAATGCGCAGGCCGAGGGATC
770 CCCACGAAACAGGA-GTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAGGCCGA-GGATC
* *
31247854 -ACCCGGTCCCCCCTGCGTGCTGCC-ATCCTGCTGTCTCATCCCTCGGGTCCAGTCTGATCTTAG
833 GACCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGTCTCATCCCTC-GATCCAGTCTGATCTTAG
31247917 ACT-GGAATGAACTCCGTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
897 ACTAGGAATGAACTCCG-GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
*
31247979 CAAATTTGGCAGAGGTGATCCTTGTATTTTTGTTGGTATGCA-ACAAAAAATTCAGCTAAAAACT
1 CAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGTATGCACA-AAAAAATTCAGCTAAAAACT
*
31248043 CGAAGTGGAGAAGA-TTTGTGAACCGTTTGACAAAAGTGGCCCCATTACAACACTTTA
65 CGAAGTGGAGAAGATTTTGTG-ACCGTTTGACAAAAGTGTCCCCATTACAACACTTTA
31248100 GTTGATGAAG
Statistics
Matches: 994, Mismatches: 71, Indels: 32
0.91 0.06 0.03
Matches are distributed among these distances:
957 141 0.14
958 103 0.10
959 67 0.07
960 207 0.21
961 166 0.17
962 277 0.28
963 30 0.03
964 3 0.00
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.21
Consensus pattern (958 bp):
CAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGGAGAAGATTTTGTGACCGTTTGACAAAAGTGTCCCCATTACAACACTTTAATGGCTACT
GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAAG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCG
GCCCCCAATCACCGGAACCCCCAATGCCATCGGTTAGGCTCTCTGGCGATGCTCCGACGATGGTG
CCCCGGGCGAAAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAAA
TATTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAAGCAGAATGCGCAAGCTGGGGATCGACC
CGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCATAACCCTCGATCTAGTCCGATCTTAAACTAG
GAATGAACTCCGTATGCATAAGTCAACCCAAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAG
GCATAATACGCAAGCCGAGGATCGCCCCGATCCCCCTCAGCGTGCTGTCGGTCCCGCTGCCGCAA
CCCTCGATCCAGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA
GGAGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAGGCCGAGGATCGACCCGATCCCCC
CTGCGTGCTGCCGATCCTGCTGTCTCATCCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACT
CCGGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
Found at i:31248706 original size:159 final size:158
Alignment explanation
Indices: 31248334--31248829 Score: 430
Period size: 158 Copynumber: 3.1 Consensus size: 158
31248324 AACTTCATAT
* **
31248334 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * **
31248399 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTTGATCT
66 CCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGCCCCGATCCCCCCTGCGTGCTGCCGATCT
* ** * * * *
31248464 TGCTGTCGTAACCCTTGATCTAGTTTGA
131 TGCTGCCACAACCCTCGATCGAGCTAGA
* * * * *
31248492 TCTTAAAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
31248556 GCCGACCGAAGAGGCATAATACGCAAGCCGATGATCGCCCCGGTCCCCCTCTGTGTGCTGCCGGT
65 GCCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGCCCCGATCCCCC-CTGCGTGCTGCCGAT
*
31248621 GC-TGCTGCCACAACCCTCGATCCGA-CTAGG
129 -CTTGCTGCCACAACCCTCGAT-CGAGCTAGA
* *
31248651 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTCA
* * * * * * * * * * *
31248715 GTCGGCCGGAGAGGCAGAATGCGTAAGCCG-GAGATCACCTCGGTCCCTCCTGCGTGTTGCCAAT
65 GCCGACCGAAGAGGCAGAATACGCAAGCCGAG-GATCGCCCCGATCCCCCCTGCGTGCTGCCGAT
* * * * * *
31248779 CCTGCTACCGCAACCCCCGGTCCAGTCT-GA
129 CTTGCTGCCACAACCCTCGATCGAG-CTAGA
*
31248809 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
31248830 TGTGTTCTTA
Statistics
Matches: 270, Mismatches: 57, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 140 0.52
159 121 0.45
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGCCCCGATCCCCCCTGCGTGCTGCCGATCT
TGCTGCCACAACCCTCGATCGAGCTAGA
Found at i:31249218 original size:26 final size:26
Alignment explanation
Indices: 31249189--31249241 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31249179 CCGGTTCGAT
*
31249189 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31249215 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31249241 C
1 C
31249242 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31249583 original size:26 final size:26
Alignment explanation
Indices: 31249532--31249584 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31249522 TCAGTCTAAT
*
31249532 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
*
31249558 CTTAGACTGGGGATGAAC-TCAATATG
1 CTTAGACTGGGAATGAACTTC-ATATG
31249584 C
1 C
31249585 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:31250284 original size:26 final size:26
Alignment explanation
Indices: 31250242--31250294 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31250232 GGCTCAAAAT
31250242 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31250268 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31250294 C
1 C
31250295 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31251161 original size:159 final size:158
Alignment explanation
Indices: 31250791--31251230 Score: 503
Period size: 159 Copynumber: 2.8 Consensus size: 158
31250781 GAACTCGTAT
* * * *
31250791 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGGGCGTGCGGGCGCTCAG
* * *
31250856 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGGCCGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * **
31250921 TGCTACCGCAACCCTCGGTTCGGTCCAA
131 TGCTACCACAACCCTCGGTCCACTCCAA
* * * *
31250949 TCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAAAGGAGCGTGCGGGCGCTG
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGG-GCGTGCGGGCGCTC
* * * * *
31251012 AGCCGACTGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCATGCTGTC-A
64 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGA
* ***
31251076 GT-CTCGCTGCCACAACCCTCGGTCCAACT-GGG
128 -TCCT-GCTACCACAACCCTCGGTCC-ACTCCAA
* * * * *
31251108 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGAGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGGGCGTGCGGGCGCTCAG
* * *
31251173 CCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTG
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTG
31251231 CCTCGGTCTA
Statistics
Matches: 234, Mismatches: 40, Indels: 16
0.81 0.14 0.06
Matches are distributed among these distances:
157 6 0.03
158 103 0.44
159 117 0.50
160 8 0.03
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGGGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCCACTCCAA
Found at i:31251289 original size:26 final size:26
Alignment explanation
Indices: 31251248--31251300 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31251238 CTAGTTTGAT
*
31251248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31251274 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
31251300 C
1 C
31251301 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31252299 original size:26 final size:26
Alignment explanation
Indices: 31252261--31252388 Score: 159
Period size: 26 Copynumber: 4.9 Consensus size: 26
31252251 ATCCGATCTA
* *
31252261 AGACTTGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
31252287 AGACTGGGGATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
31252313 AGACTGGGGATGAACTCCGTATGCCT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
31252339 AGACTAGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
31252365 AGCAAT-GGAATGAACTCCGTATGC
1 AG-ACTGGGAATGAACTCCGTATGC
31252389 CTAAGCCAAC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 87 0.98
27 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:31252755 original size:159 final size:159
Alignment explanation
Indices: 31252361--31252863 Score: 412
Period size: 158 Copynumber: 3.2 Consensus size: 159
31252351 AACTCTGTAT
* *
31252361 GCTTAGCA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCA
1 GCTTA-CACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
** * * * * *
31252425 ATCGATCGGAGAGGCACAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
65 GCCGGTCAGAGAGGCACAATGCGCAAGTCGGGGACCAACCCGGTCCCCCCTGCGTGCTGCCGATC
* ** * *
31252490 CTACTGCTGCAACCCTCAGTCCGATCTGAT
130 CCACTGCCACAACCCTCAGTCCGAGCTGAG
* * * * * * *
31252520 G-TTAGAC-TGGGAATGAACTCTGTACGCATAAGTCAACCCATAAAATGAGCGTGCGGGTGCTGA
1 GCTTACACAT-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * *
31252583 GCCAG-CCGAAGAGGCATAATGCGCAAGTCGGGGACCAACCGGGTCCCCCTCTGCGTGCTGCCGG
65 GCCGGTCAG-AGAGGCACAATGCGCAAGTCGGGGACCAACCCGGTCCCCC-CTGCGTGCTGCCGA
* *
31252647 TCCCGCTGCCACAACCCTC-GCTCCG-GCTGGG
128 TCCCACTGCCACAACCCTCAG-TCCGAGCTGAG
* ** * * *
31252678 GCTTACACATGGAATGAACTCCCTATGTGTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * ** * ** * * **
31252743 CCGGTCAGAGAGGCAGAATGCGTAAACCGGGGATCGGCCCGATCCCCACTGCGTGCTGTTGATCC
66 CCGGTCAGAGAGGCACAATGCGCAAGTCGGGGACCAACCCGGTCCCCCCTGCGTGCTGCCGATCC
** * *
31252808 TGCAGCCGCAACCCTCAGTCC-AGTCTGA-
131 CACTGCCACAACCCTCAGTCCGAG-CTGAG
* * *
31252836 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTACACAT-GGAATGAACTCCGTATGC
31252864 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 64, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 143 0.53
159 117 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTACACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTCAGAGAGGCACAATGCGCAAGTCGGGGACCAACCCGGTCCCCCCTGCGTGCTGCCGATCC
CACTGCCACAACCCTCAGTCCGAGCTGAG
Found at i:31252873 original size:26 final size:26
Alignment explanation
Indices: 31252837--31252889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31252827 CCAGTCTGAT
*
31252837 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31252863 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31252889 C
1 C
31252890 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31253608 original size:26 final size:26
Alignment explanation
Indices: 31253570--31253622 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31253560 GGCCCAAAAT
31253570 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31253596 CTTAGAC-GTGGAATGAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
31253622 C
1 C
31253623 CTAAGATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31254339 original size:159 final size:159
Alignment explanation
Indices: 31253762--31254351 Score: 630
Period size: 159 Copynumber: 3.7 Consensus size: 159
31253752 TCTTAGATTG
* * * * * *
31253762 GGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGAGCCGACCGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTGAGCCGACCGAAG
* *** * * * * * * *
31253827 AGGCATAATGCATGAGCCGGGGATCGGCCTGGTCCCCCTGTGCATGCTGTCTGTCCCGCTACCAC
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACCAC
*
31253892 AACCCTC-AGTCTGGCTGGGGCTTAGGCAT
131 AACCCTCGA-TCTGGCTGGGGCTTAGACAT
* * * * * * * *
31253921 GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCATTCAGTCGGCCGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTGAGCCGACCGAAG
* * * * * *
31253986 AGGCAGAATGCGAAAGCCGGGGATC-AGCCCGATCCCCC-CGGCGTGCTGTCGATCCCACTTCCA
66 AGGCAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACCA
* * *
31254049 CAACCCTCGGTCCGGCTGTGGCTTAGACAT
130 CAACCCTCGATCTGGCTGGGGCTTAGACAT
* * * * * * *
31254079 GGAATGAACTCCCTATGACTAAGCCAACCCATGGAATGAGCGTGCGGGCACTGAGTCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTGAGCCGACCGAAG
* * * * * *
31254144 AGACATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGGTCTCGCTGCCAC
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACCAC
31254209 AACCCTCGATCTGGCTGGGGCTTAGACAT
131 AACCCTCGATCTGGCTGGGGCTTAGACAT
* * * *
31254238 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTAAGGGCGCTAAGCCGGCCGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTGAGCCGACCGAAG
* * * *
31254303 AGGCAGAATGCGCAAGCCAGGGATCTACTCGGTCCCCC-CTGCATGCTGT
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGT
31254352 TGAACTTGCT
Statistics
Matches: 354, Mismatches: 73, Indels: 9
0.81 0.17 0.02
Matches are distributed among these distances:
158 140 0.40
159 214 0.60
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTGAGCCGACCGAAG
AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACCAC
AACCCTCGATCTGGCTGGGGCTTAGACAT
Found at i:31254341 original size:317 final size:317
Alignment explanation
Indices: 31253762--31254416 Score: 791
Period size: 317 Copynumber: 2.1 Consensus size: 317
31253752 TCTTAGATTG
* *
31253762 GGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGAGCCGACCGAAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCACTGAGCCGACCGAAG
* ** * * * * *
31253827 AGGCATAATGCATGAGCCGGGGATCGGCCTGGTCCCCCTGTGCATGCTGTCTGTCCCGCTACCAC
66 AGACATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTACCAC
* * *
31253892 AACCCTCAGTCTGGCTGGGGCTTAGGCATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAA
131 AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * *
31253957 TGGGCGTACGGGCATTCAGTCGGCCGAAGAGGCAGAATGCGAAAGCCGGGGATCAGCCCGATCCC
196 CGAGCGTAAGGGCACTAAGCCGGCCGAAGAGGCAGAATGCGAAAGCCAGGGATCAGCCCGATCCC
*
31254022 CCCGGCGTGCTGTCGATCCCACTTCCACAACCCTCGGTCCGGCTGTGGCTTAGACAT
261 CCCGGCATGCTGTCGATCCCACTTCCACAACCCTCGGTCCGGCTGTGGCTTAGACAT
* * * * * * *
31254079 GGAATGAACTCCCTATG-ACTAAGCCAACCCATGGAATGAGCGTGCGGGCACTGAGTCGACCGGA
1 GGAATGAACTCCATATGCA-TAAGCCAACCCACGAAACGAGCGTGCGAGCACTGAGCCGACCGAA
* ** * *
31254143 GAGACATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGGTCTCGCTGCCA
65 GAGACATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTACCA
31254208 CAACCCTC-GATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
130 CAACCCTCAG-TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * *
31254272 AACGAGCGTAAGGGCGCTAAGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCTA-CTCGGT
194 AACGAGCGTAAGGGCACTAAGCCGGCCGAAGAGGCAGAATGCGAAAGCCAGGGATC-AGCCCGAT
* * * *** * * * *
31254336 CCCCCCTGCATGCTGTTGAACTTGCTACCGCAACCCTCGGTCCGATCCGAT--CTTAGAC-T
258 CCCCCCGGCATGCTGTCGATCCCACTTCCACAACCCTCGGTCCG-GCTG-TGGCTTAGACAT
31254395 GGGAATGAACTCCATATGCATA
1 -GGAATGAACTCCATATGCATA
31254417 CTCTGGGGAT
Statistics
Matches: 283, Mismatches: 48, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
316 3 0.01
317 275 0.97
318 4 0.01
319 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (317 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCACTGAGCCGACCGAAG
AGACATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTACCAC
AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGAGCGTAAGGGCACTAAGCCGGCCGAAGAGGCAGAATGCGAAAGCCAGGGATCAGCCCGATCCC
CCCGGCATGCTGTCGATCCCACTTCCACAACCCTCGGTCCGGCTGTGGCTTAGACAT
Found at i:31254429 original size:26 final size:26
Alignment explanation
Indices: 31254387--31254543 Score: 158
Period size: 26 Copynumber: 6.0 Consensus size: 26
31254377 CCGATCCGAT
* *
31254387 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
31254413 CATACTCTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
31254439 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
31254465 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTACACT-GGGAATGAACTCCGTATG
* * * * *
31254491 CCTAGACTAGGAAGGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
31254517 TTTAGC-CAT-GGAATGAACTCCGTATG
1 CTTA-CAC-TGGGAATGAACTCCGTATG
31254543 C
1 C
31254544 CTAAGCCAAC
Statistics
Matches: 108, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
25 2 0.02
26 102 0.94
27 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31254478 original size:52 final size:51
Alignment explanation
Indices: 31254387--31254543 Score: 179
Period size: 52 Copynumber: 3.0 Consensus size: 51
31254377 CCGATCCGAT
* * * *
31254387 CTTAGACTGGGAATGAACTCCATATGCATACTCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATGCTTA-GCTAGGGATGAACTCCGTATG
*
31254439 CTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATGCTTAG-CTAGGGATGAACTCCGTATG
* * * * * * *
31254491 CCTAGACTAGGAAGGAACTCTGTATGTTTAGCCATGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGCTA-GGGATGAACTCCGTATG
31254543 C
1 C
31254544 CTAAGCCAAC
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
51 2 0.02
52 88 0.98
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (51 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGCTAGGGATGAACTCCGTATG
Found at i:31254516 original size:78 final size:78
Alignment explanation
Indices: 31254387--31254543 Score: 185
Period size: 78 Copynumber: 2.0 Consensus size: 78
31254377 CCGATCCGAT
* * * *
31254387 CTTAGACTGGGAATGAACTCCATATGCATACTCTGGGGATGAACTCCGTATGCTTA--CACTGGG
1 CTTAGACTGGGAATGAACTCCATATGCATACACTAGGAAGGAACTCCGTATGCTTAGCCA-T-GG
31254450 AATGAACTCCGTATG
64 AATGAACTCCGTATG
* * * * *
31254465 CTTAGACTAGGG-ATGAACTCCGTATGCCTAGACTAGGAAGGAACTCTGTATGTTTAGCCATGGA
1 CTTAGACT-GGGAATGAACTCCATATGCATACACTAGGAAGGAACTCCGTATGCTTAGCCATGGA
31254529 ATGAACTCCGTATG
65 ATGAACTCCGTATG
31254543 C
1 C
31254544 CTAAGCCAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 61 0.91
79 4 0.06
80 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (78 bp):
CTTAGACTGGGAATGAACTCCATATGCATACACTAGGAAGGAACTCCGTATGCTTAGCCATGGAA
TGAACTCCGTATG
Found at i:31255019 original size:158 final size:157
Alignment explanation
Indices: 31254529--31255089 Score: 577
Period size: 158 Copynumber: 3.5 Consensus size: 157
31254519 TAGCCATGGA
* * * *
31254529 ATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCATGCGAGCGCTCAGTCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGG
** * * * *
31254594 CAGAATGCGTGAGCCGAGGATTGGCCCAGTCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACC
66 CAGAATGCGCAAGCCGGGGATTGGCCC-GTCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACC
* * * *
31254659 CTCGGTCCAGTCTGATGTTAGACTGGGA
130 CTCGATCCAGTCCGATCTTAGACTGGGG
** * * * * * * *
31254687 ATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGTGCTGAGCCGGCCGAAGAAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGG
* * *** * *
31254752 CATAATGCGCAAGTCGGGGACCAGCCCGATCCCCCTCTGCGTGCTGCCGACCCCACTGCCACAAC
66 CAGAATGCGCAAGCCGGGGATTGGCCCG-T-CCCCTCTGCGTGCTGCCGATCCTACTGCCACAAC
** ** *
31254817 CCTCGATCCAGTTGGGGCTTACACAT--GG
129 CCTCGATCCAGTCCGATCTTAGAC-TGGGG
* * * **
31254845 ATTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAG
1 A-TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAG
* * * *
31254910 GCAGAATGCGTAAGTCGGGGATTGGCCCTGTCCCCTCTGCGTGCTGTCGATCCTACAGCCACAAC
65 GCAGAATGCGCAAGCCGGGGATTGGCCC-GTCCCCTCTGCGTGCTGCCGATCCTACTGCCACAAC
*
31254975 CCTCGATCCAATCCGATCTTAGACTGGGG
129 CCTCGATCCAGTCCGATCTTAGACTGGGG
* * * * * * *
31255004 ATGAACTCCATATGCCTAAGTCAACCCACAAAATGAACATGGGGGCGCTCAGCCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGG
*
31255069 CAGGATGCGCAAGCCGGGGAT
66 CAGAATGCGCAAGCCGGGGAT
31255090 CGAACGAGTG
Statistics
Matches: 321, Mismatches: 75, Indels: 14
0.78 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 193 0.60
159 124 0.39
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGG
CAGAATGCGCAAGCCGGGGATTGGCCCGTCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCC
TCGATCCAGTCCGATCTTAGACTGGGG
Found at i:31255724 original size:26 final size:26
Alignment explanation
Indices: 31255687--31255738 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31255677 GCTCAAAATA
31255687 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
31255713 TTAGA-TGTGGAATGAACTTCGTATGC
1 TTAGACTG-GGAATGAACTCCGTATGC
31255739 CTAAGCTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:31256227 original size:158 final size:157
Alignment explanation
Indices: 31255944--31256316 Score: 356
Period size: 159 Copynumber: 2.3 Consensus size: 157
31255934 CCAGCAGAAG
* * * *
31255944 AGGCATAATGCGCAAGCCAGGGATGGGCCTGGTCCCCCTTTG-CGTGCTGCC-AGTCCCGCTACC
1 AGGCAGAATGCGCAAGCCGGGGAT-CGCCTGGTCCCCC---GACGTGCTGCCGA-TCCCACTACC
* *** * ** * *
31256007 ACAACCCTCGGTCTGGCTGGGGCATAGGCATGGAATGAACTCTTTATGCCTAGGCCAACCCATAA
61 ACAACCCTCGATCCCACTGGGGCATAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAA
* * *
31256072 AACGGGCGTGC-GGACACTCATTCGATCGGAA
126 AACAGGCATGCAGGACACTCAGTCGATCGGAA
*
31256103 AGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCTCCGACGTGCTGCCGATCCCACTGCCACA
1 AGGCAGAATGCGCAAGCCGGGGATC-GCCTGGTCCC-CCGACGTGCTGCCGATCCCACTACCACA
* * * *
31256168 ACCCTCGATCCCACTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCTAACCCATGAAAC
64 ACCCTCGATCCCACTGGGGCATAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAAC
*** * *
31256233 AGGCATGCAGGGTGCTCAGTCGGTCGGAG
129 AGGCATGCAGGACACTCAGTCGATCGGAA
** * * * *
31256262 AGATAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
1 AGGCAGAATGCGCAAGCCGGGGATCG-CCTGGT-CCCCCGACGTGCTGCCGATCC
31256317 TGCTGTCGCA
Statistics
Matches: 175, Mismatches: 32, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 79 0.45
159 90 0.51
160 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
AGGCAGAATGCGCAAGCCGGGGATCGCCTGGTCCCCCGACGTGCTGCCGATCCCACTACCACAAC
CCTCGATCCCACTGGGGCATAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAACAG
GCATGCAGGACACTCAGTCGATCGGAA
Found at i:31256764 original size:26 final size:26
Alignment explanation
Indices: 31256726--31256804 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
31256716 CCGGTCCGAT
31256726 CTTAGAC-TGGGAATGAACTCTATATG
1 CTTAGACAT-GGAATGAACTCTATATG
31256752 CTTAGACATGGAATGAACTCTATATG
1 CTTAGACATGGAATGAACTCTATATG
*
31256778 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCTATATG
31256804 C
1 C
31256805 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTATATG
Found at i:31256941 original size:222 final size:222
Alignment explanation
Indices: 31256555--31256992 Score: 576
Period size: 222 Copynumber: 2.0 Consensus size: 222
31256545 TCCAGCTGGG
* * * * * * *
31256555 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAATGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACATACGGGCGCTCAG
* * ** * * *
31256620 TCAATCGGAGAGGTAGAATGCGTAAGTCAGGGATCTGCTCGATCCCCCCTGCGTGTTGCCGATCC
66 TCAATCAGAGAGGCAGAATGCACAAGTCAGGGATCTGCCCGATCCCCCCTGCGTGCTACCGATCC
**
31256685 TGCTGTTGGTCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATA
131 TGCTACTGGTCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATA
31256750 TGCTTAGACATGGAATGAACTCTATAT
196 TGCTTAGACATGGAATGAACTCTATAT
**
31256777 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGCGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACATACGGGCGCTCAG
* * * *
31256842 TCGATCAGAGAGGCAGAATGCACAAG-CTGGGGAT-TGGCCCGGTCCCCCCCTGTGTGCTACCGA
66 TCAATCAGAGAGGCAGAATGCACAAGTC-AGGGATCT-GCCCGAT-CCCCCCTGCGTGCTACCGA
* * * * *
31256905 TCCTGCTACTGGTCCTGCTA-CGCAATCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTT
128 TCCTGCTACTGGTCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT
*
31256969 GTATGCTTAGACATGGAATGAACT
193 ATATGCTTAGACATGGAATGAACT
31256993 TTGTATGCCT
Statistics
Matches: 185, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
221 2 0.01
222 150 0.81
223 33 0.18
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (222 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACATACGGGCGCTCAG
TCAATCAGAGAGGCAGAATGCACAAGTCAGGGATCTGCCCGATCCCCCCTGCGTGCTACCGATCC
TGCTACTGGTCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATA
TGCTTAGACATGGAATGAACTCTATAT
Found at i:31256986 original size:26 final size:26
Alignment explanation
Indices: 31256948--31257000 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31256938 CCGGTCTGAT
31256948 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
31256974 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTTTGTATG
31257000 C
1 C
31257001 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATG
Found at i:31257329 original size:159 final size:156
Alignment explanation
Indices: 31256973--31257335 Score: 392
Period size: 157 Copynumber: 2.3 Consensus size: 156
31256963 AACTTTGTAT
* * *
31256973 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCT-TATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
** * * *
31257038 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGATCCCCCTACGTGCTGTCGATCCT
65 CCAATCGGAGAGACAGAATGCACAAGCCAGGGATCAGCCTGATCCCCCTACGTGCTGTCGATCCC
** * *
31257103 GCTACCGTAACCTTCGGTCCGGTCTGA
130 GCTACCACAACCGTCAGTCCGGTCTGA
* * * * * *
31257130 TCGTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAAC-TCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCA
* ** * *
31257194 GCCAATCGGAGAGACATAATGCACAAGCTGGGGATCGGCTTTG-TCCCCCT-CTGTGTGCTGTCG
64 GCCAATCGGAGAGACAGAATGCACAAGCCAGGGATCAGC-CTGATCCCCCTAC---GTGCTGTCG
* *
31257257 GTCCCGCTACCACAACCGTCAGTCCGG-CTGGG
125 ATCCCGCTACCACAACCGTCAGTCCGGTCT-GA
31257289 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAAC
1 GCTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAAC
31257336 AGGCGTGCAG
Statistics
Matches: 168, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
156 2 0.01
157 89 0.53
158 6 0.04
159 70 0.42
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGC
CAATCGGAGAGACAGAATGCACAAGCCAGGGATCAGCCTGATCCCCCTACGTGCTGTCGATCCCG
CTACCACAACCGTCAGTCCGGTCTGA
Found at i:31257380 original size:159 final size:156
Alignment explanation
Indices: 31256973--31257387 Score: 405
Period size: 159 Copynumber: 2.6 Consensus size: 156
31256963 AACTTTGTAT
* * **
31256973 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCGTG-TGAGCGCTCA
1 GCTTAGACATGGAATGAACTCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCAG-GCGCTTG
*
31257037 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGATCCCCCTACGTGCTGTCGATCC
64 GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGATCCCCCTACGTGCTGTCGATCC
* ** * *
31257102 TGCTACCGTAACCTTCGGTCCGGTCTGA
129 CGCTACCACAACCGTCAGTCCGGTCTGA
* * * * * *
31257130 TCGTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGC-TG
1 GCTTAGACAT-GGAATGAAC-TCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTTG
* * * * ** * *
31257193 AGCCAATCGGAGAGACATAATGCACAAGCTGGGGATCGGCTTTG-TCCCCCT-CTGTGTGCTGTC
64 -GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGC-CTGATCCCCCTAC---GTGCTGTC
* *
31257256 GGTCCCGCTACCACAACCGTCAGTCCGG-CTGGG
124 GATCCCGCTACCACAACCGTCAGTCCGGTCT-GA
*
31257289 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCAGGTGCTTG
1 GCTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCGCTTG
*
31257353 GCCGATCGAAGAGGCAGAAT-CTGCAAGCCAGGGAT
64 GCCGATCGGAGAGGCAGAATGC-GCAAGCCAGGGAT
31257388 TGGCTCGATC
Statistics
Matches: 205, Mismatches: 39, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
156 2 0.01
157 86 0.42
158 9 0.04
159 105 0.51
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTTGGC
CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGATCCCCCTACGTGCTGTCGATCCCG
CTACCACAACCGTCAGTCCGGTCTGA
Found at i:31257477 original size:26 final size:26
Alignment explanation
Indices: 31257448--31257500 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31257438 CCAATCCGAT
*
31257448 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
**
31257474 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
31257500 C
1 C
31257501 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:31264588 original size:26 final size:26
Alignment explanation
Indices: 31264552--31264604 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31264542 CTCGTCCGAT
31264552 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
31264578 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31264604 C
1 C
31264605 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31265024 original size:158 final size:158
Alignment explanation
Indices: 31264747--31265032 Score: 344
Period size: 158 Copynumber: 1.8 Consensus size: 158
31264737 CTGACTGGGG
* * * *
31264747 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGTGAGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGAGAGCACTCAGT
* * * * *
31264812 CGACCGAAAAGGCAGACTGCGCAAGCCGGGGTTCGACTCGATCCCCCCTACGTGCTGCCAATCCT
66 CGACCGAAAAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCAATCCT
31264877 GCTACAGCAACCCTCTGTCCGGTCCGAT
131 GCTACAGCAACCCTCTGTCCGGTCCGAT
* * * *
31264905 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGT-ACGAGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGA-GAGCACTCA
* * * * * * *
31264968 G-CTACCGGAGAGGCATAATACGCAAGCCGGGGATCGACCCGGTCCCTCTCTGCGTGCTACCAAT
64 GTCGACCGAAAAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCC-CCCTACGTGCTACCAAT
31265032 C
128 C
31265033 TCGCTGTCGG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
157 38 0.36
158 67 0.64
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGAGAGCACTCAGT
CGACCGAAAAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCAATCCT
GCTACAGCAACCCTCTGTCCGGTCCGAT
Found at i:31265279 original size:26 final size:26
Alignment explanation
Indices: 31265240--31265292 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31265230 CCGGTCCAAT
31265240 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
31265266 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCGTATG
31265292 C
1 C
31265293 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:31265692 original size:519 final size:521
Alignment explanation
Indices: 31264746--31265884 Score: 1389
Period size: 519 Copynumber: 2.2 Consensus size: 521
31264736 TCTGACTGGG
*
31264746 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGTG-AGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCA-GGCGCTCA
* * * **
31264810 G-TCGACCGAAAAGGCAGACTGCGCAAGCCGGGGTTCGACTCGATCCCCCCTACGTGCTGCCAAT
65 GCT-GACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGATCCCCCCTACGTGCTGCCAAT
* ** *
31264874 CCTGCTACAGCAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
129 CCTACTACAGCAACCCTCTGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTC
* * * *
31264939 AACCCACGAAATGAGCGTACGAGCACTGAGCTACCGGAGAGGCATAATACGCAAGCCGGGGATCG
194 AACCCACGAAACGAGCGTACGAGCACTGAGCGACCGGAAAGGCATAATACGCAAGCCAGGGATCG
* * * * * * *
31265004 ACCCGGTCCCTCTCTGCGTGCTACCAATCTCGCTGTCGGTCCTGCTGCCACAACCTTCAGTCTGG
259 ACCCGGTCCCTCTCTGCGTGCTACCAATCCCACTGTCGGCCCTGCTACCACAACCCTCAGTCCGA
* * * *
31265069 CTGGGGCTTAGAAATTGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACGAGCGTGCGGGTG
324 CGGGGGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
** * * * * *
31265134 CTCAATTGGCCAAAGAGGCAGAATGCGTAAGCGACGGATTGGCTCGGTCCCCCT-GTGCTGTCGA
389 CTCAACCGACCAAAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGGTCCCCCTGGTGCTATCGA
* * * *
31265198 TCCTGTGCTGGTCCTGCTAT-GCAACCCTTGGA-CCGGTCCAATCTTAGACTGTGAATGAACTCC
454 TCCTGTGCTGGTCCTACTATCGCAACCC-TCGATCCGATCCAATCTTAGACTGGGAATGAACTCC
*
31265261 GTAT
518 ATAT
* *
31265265 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCATAAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
* * * * * * * *
31265330 CTGGCCGGAGAGGCAAAATGGGCAAGCCGGGGACCGGC-CTG-TCCTCCCTGCGTGCTGTCGATC
66 CTGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTC-GATCCCCCCTACGTGCTGCCAATC
* **
31265393 CTACTGCCTCAACCCT-TGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTC
130 CTACTACAGCAACCCTCT-GTCCAATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTC
* * * * ** * **
31265457 AACCCTCGAAACGAGTGTGCGGGTGCTGAGCCGGCCGGAAAGGCATAATGTGCAAGCCAGGGATC
194 AACCCACGAAACGAGCGTACGAGCACTGAG-CGACCGGAAAGGCATAATACGCAAGCCAGGGATC
* * *
31265522 GACTCGGTACCC-CTCTGCGTGCTACCGATCCCACTG-CTGGCCCTGCTACCACAACCCTCGGTC
258 GACCCGGT-CCCTCTCTGCGTGCTACCAATCCCACTGTC-GGCCCTGCTACCACAACCCTCAGTC
* * * *
31265585 CGACGGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGG
321 CGACGGGGGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
* ** *
31265650 GTGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGGTCCCCTTGGGTGCTA
386 GTGCTCAACCGACCAAAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGGTCCCCCT-GGTGCTA
* * * *
31265715 TCTATCCTGTGCTGGTCCTACTGTCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAAC
450 TCGATCCTGTGCTGGTCCTACTATCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAAC
31265780 TCCATAT
515 TCCATAT
** * *
31265787 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
* * * *
31265852 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGA
66 CTGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
31265885 TCAGCCCGGT
Statistics
Matches: 523, Mismatches: 86, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
517 1 0.00
518 98 0.19
519 267 0.51
520 5 0.01
521 29 0.06
522 123 0.24
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (521 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
CTGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGATCCCCCCTACGTGCTGCCAATCC
TACTACAGCAACCCTCTGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
CCCACGAAACGAGCGTACGAGCACTGAGCGACCGGAAAGGCATAATACGCAAGCCAGGGATCGAC
CCGGTCCCTCTCTGCGTGCTACCAATCCCACTGTCGGCCCTGCTACCACAACCCTCAGTCCGACG
GGGGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT
CAACCGACCAAAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGGTCCCCCTGGTGCTATCGATC
CTGTGCTGGTCCTACTATCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATA
T
Found at i:31265800 original size:26 final size:26
Alignment explanation
Indices: 31265762--31265814 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31265752 CCGATTCGAT
31265762 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31265788 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31265814 C
1 C
31265815 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31266000 original size:196 final size:194
Alignment explanation
Indices: 31265593--31266041 Score: 571
Period size: 196 Copynumber: 2.3 Consensus size: 194
31265583 TCCGACGGGG
* * * *
31265593 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * *** *
31265658 CCGATCGGAGAGGCAGAATGCGCAAGCCACGGATTGGCCCGGTCCCCTTGGGTGCTATCTATCCT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCACGGATCAGCCCGGTCCCCCTACATGCTATCGATCCT
* * * *
31265723 GTGCTGGTCCTACTGTCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCATAT
131 GTGCTGGTCCTACTCTCACAACCCTAGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
31265787 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * **
31265852 CCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCACGGATCAGCCCGGT-CCCCCTACATGCTATCGATCC
* * *
31265917 TGCTGCTGGTCCTACTACT-ACAACGCTA-AGTCC-AGTCCGATCTTAGACTGGGGATGAACTCT
130 TG-TGCTGGTCCTACT-CTCACAACCCTAGA-TCCGA-TCCGATCTTAGACTGGGAATGAACTCC
*
31265979 GTAT
191 ATAT
* * *
31265983 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
31266042 AGTCAGCTGA
Statistics
Matches: 219, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
194 95 0.43
195 20 0.09
196 103 0.47
197 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCACGGATCAGCCCGGTCCCCCTACATGCTATCGATCCT
GTGCTGGTCCTACTCTCACAACCCTAGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:31267143 original size:26 final size:26
Alignment explanation
Indices: 31267114--31267163 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
31267104 ATCCGATCTC
31267114 AGACTGGGAAGGAACTCCGTATGCTT
1 AGACTGGGAAGGAACTCCGTATGCTT
* *
31267140 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAAGGAACTCCGTATGC
31267164 CTGAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (26 bp):
AGACTGGGAAGGAACTCCGTATGCTT
Found at i:31268099 original size:26 final size:26
Alignment explanation
Indices: 31268070--31268122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31268060 CCGATCTGAT
31268070 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
31268096 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
31268122 C
1 C
31268123 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:31268600 original size:158 final size:156
Alignment explanation
Indices: 31268096--31268600 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 156
31268086 ACTCCGTATG
* * * * *
31268096 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
* * ***
31268161 AGGTCGGAGAGGTAGAATGAGCAAGTTAGGGA-CTGGCCCGATCCCCCCT-GCGTGCTGTCGATC
66 A-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGATCCCCCCTAG-GTGCTGTCGATC
*
31268224 CTACTGCCACAACCCTCGGTCCAGTCCGAT
128 CTACTGCCACAACCCTCGGTCCA-TCGGAT
* * * * * * *
31268254 CTTAGA-TTGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGCGTGTGGGCA-TTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCA
* * * * * * * *
31268317 GCCAGTTGGAGAGGCATAATGCACAAGCCGAGGATCGGCTCGATCCTCCTCTACGTGCTG-CTGG
64 G-CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCC-CCCCTAGGTGCTGTC-GA
** * **
31268381 TCCCGCTGCCACAACCCTCGGTCCAGCTGGGG
126 TCCTACTGCCACAACCCTCGGTCCATC-GGAT
* * * * *
31268413 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAGGTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG-
* *
31268478 CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-AGTCCCCCCTAGGTGCTGTCGATCC
65 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCCTAGGTGCTGTCGATCC
* *
31268542 TACTGCTACAACCCTTGGTCCGATCGGAT
129 TACTGCCACAACCCTCGGTCC-ATCGGAT
*
31268571 CTTAGAC-TGGGAATGAACTCCATATGCCTA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTA
31268601 GACTGGGGAT
Statistics
Matches: 273, Mismatches: 60, Indels: 28
0.76 0.17 0.08
Matches are distributed among these distances:
157 2 0.01
158 145 0.53
159 125 0.46
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
AGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTAGGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCCATCGGAT
Found at i:31268612 original size:26 final size:26
Alignment explanation
Indices: 31268573--31268626 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
31268563 GATCGGATCT
31268573 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
31268599 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
31268625 TA
1 TA
31268627 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:31269334 original size:26 final size:25
Alignment explanation
Indices: 31269293--31269344 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
31269283 GGCTCAAACT
*
31269293 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCATATG
*
31269318 CTTAGACATGGACTGAACTCCATATG
1 CTTAGAC-TGGAATGAACTCCATATG
31269344 C
1 C
31269345 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:31269663 original size:27 final size:26
Alignment explanation
Indices: 31269633--31269686 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
31269623 CCAACTTGAT
*
31269633 CTTAGACTTGGAATGAACTCCAGTATG
1 CTTAGACTGGGAATGAACTCC-GTATG
* *
31269660 CTTAGACTGGGGATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31269686 C
1 C
31269687 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31269867 original size:26 final size:26
Alignment explanation
Indices: 31269829--31269881 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31269819 CTGATCTGAT
31269829 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31269855 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31269881 C
1 C
31269882 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31270040 original size:25 final size:26
Alignment explanation
Indices: 31270012--31270063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31270002 CTGATCTGAT
*
31270012 CTTAGACTGGA-ATGAACTCTGTATG
1 CTTAGACTAGAGATGAACTCTGTATG
*
31270037 CTTAGATTAGAGATGAACTCTGTATG
1 CTTAGACTAGAGATGAACTCTGTATG
31270063 C
1 C
31270064 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGAGATGAACTCTGTATG
Found at i:31271079 original size:158 final size:158
Alignment explanation
Indices: 31270758--31271095 Score: 360
Period size: 158 Copynumber: 2.1 Consensus size: 158
31270748 ATCTTCGTAT
* * *
31270758 GCTTCGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
31270823 CCGACTGGAGAGGTAGAATGGCAAGATGAGGATCGGCCCAGTCCCCCTCTACATGCTACTGGTCC
66 CCGACCGGAGAGGCAGAATGGCAAGACGAGGATCAGCCCAGTCCCCCACTACATGCTACTGATCC
* * *
31270888 CGCTGCCACAACCATCGATCTGGCTGGG
131 CGCTACCACAACCATCGATCCGGCTGGA
* *
31270916 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * * * * *
31270980 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCACTGCGTGCT-GTCGA
65 GCCGACCGGAGAGGCAGAATG-GCAAGACGAGGATCAGCCCAGTCCCCCACTACATGCTACT-GA
* * * * *
31271043 TCCTGCTACCCCAACCCTCGATCCGGTTTGA
128 TCCCGCTACCACAACCATCGATCCGGCTGGA
*
31271074 TCTTAGAC-TGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
31271096 GTATGCTTAG
Statistics
Matches: 148, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 128 0.86
159 17 0.11
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGGCAAGACGAGGATCAGCCCAGTCCCCCACTACATGCTACTGATCC
CGCTACCACAACCATCGATCCGGCTGGA
Found at i:31271104 original size:26 final size:26
Alignment explanation
Indices: 31271075--31271127 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31271065 CCGGTTTGAT
31271075 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31271101 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31271127 C
1 C
31271128 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31271323 original size:26 final size:26
Alignment explanation
Indices: 31271294--31271389 Score: 183
Period size: 26 Copynumber: 3.7 Consensus size: 26
31271284 TCTTAGACTG
*
31271294 GGAATGAACTTCGTATGCTTATACAT
1 GGAATGAACTCCGTATGCTTATACAT
31271320 GGAATGAACTCCGTATGCTTATACAT
1 GGAATGAACTCCGTATGCTTATACAT
31271346 GGAATGAACTCCGTATGCTTATACAT
1 GGAATGAACTCCGTATGCTTATACAT
31271372 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
31271390 CTAAGCCAAC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTATACAT
Found at i:31271864 original size:158 final size:158
Alignment explanation
Indices: 31271372--31271864 Score: 415
Period size: 158 Copynumber: 3.1 Consensus size: 158
31271362 GCTTATACAT
* ** *
31271372 GGAATGAACTCCGTATGCCTAAGCCAACCC-TCGAAATGAGCGTACGGGCGCTCAGTCGGTCGGT
1 GGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAAATGAGCGTACGAGCGCTCAACCGGTCGGA
* * * * * * * * *
31271436 GAGGCAGAATGCACAAGCCAGGGACCAGCCTGATCCCTCTTGTGTGCTGTCAACCCTGCTGCCAC
65 GAAGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCTTGCTGCCAC
** * *
31271501 AACCCTCGGTCCGATCCGATCTTAGACTG
130 AACCCTCGACCCGATCTGATCTTAGACTA
* * ** * * * * * * * *
31271530 GGAACGAACACCGTATGCCTAAGTAAACCCACGAAACGCGCGTTCGAGCACTGAACCAGCCGGA-
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGAGCGCTCAACCGGTCGGAG
* * * * * * *
31271594 AAGGCATAATGCGCAAGCCAGGGATCGGCCCGA-CCTGCCTCTGCGTGCTGTGGGTCTCGCTGCC
66 AA-GCAGAATGCACAAGCCAGGGATCAGCCCGATCC--CCCCTGCGTGCTGTCGATCTTGCTGCC
** * * *
31271658 ACAACCCTC-AGTCTAGCTAGGGT-TTAGAC-A
128 ACAACCCTCGACCCGATCT--GATCTTAGACTA
* * * * *
31271688 TGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGTGTGCGAGCGCTCAACCGGTCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGAGCGCTCAACCGGTCGGA
* * * *
31271753 GAAGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCT-TCTGATCTTACTACCG
65 GAAGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTC-GATCTTGCTGCCA
31271817 CAACCCTCGACCCGATCTGATCTTAGACTA
129 CAACCCTCGACCCGATCTGATCTTAGACTA
31271847 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
31271865 TTAGACTGGG
Statistics
Matches: 250, Mismatches: 72, Indels: 26
0.72 0.21 0.07
Matches are distributed among these distances:
157 6 0.02
158 125 0.50
159 113 0.45
160 6 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGAGCGCTCAACCGGTCGGAG
AAGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCTTGCTGCCACA
ACCCTCGACCCGATCTGATCTTAGACTA
Found at i:31271879 original size:26 final size:26
Alignment explanation
Indices: 31271838--31271890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31271828 CCGATCTGAT
31271838 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
31271864 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31271890 C
1 C
31271891 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31272793 original size:26 final size:26
Alignment explanation
Indices: 31272764--31272816 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31272754 CCGGTCCGAT
*
31272764 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
31272790 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
31272816 C
1 C
31272817 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:31274778 original size:26 final size:25
Alignment explanation
Indices: 31274743--31274794 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
31274733 CTGGTCTGAT
31274743 CTTAGCTGGGAATGAACTTCGTATG
1 CTTAGCTGGGAATGAACTTCGTATG
**
31274768 CTTAGACTGGGGTTGAACTTCGTATG
1 CTTAG-CTGGGAATGAACTTCGTATG
31274794 C
1 C
31274795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (25 bp):
CTTAGCTGGGAATGAACTTCGTATG
Found at i:31274980 original size:26 final size:26
Alignment explanation
Indices: 31274951--31275003 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31274941 CCGGTCTGAT
*
31274951 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* *
31274977 CTTAGGCATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31275003 C
1 C
31275004 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31275278 original size:158 final size:157
Alignment explanation
Indices: 31274986--31275476 Score: 530
Period size: 157 Copynumber: 3.1 Consensus size: 157
31274976 GCTTAGGCAT
* * * * *
31274986 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAGTCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAG
* * * * * * *
31275051 AGGTAGAATGCGCAAGCCAGGGACCGACCTGATCCCCCCTGTGTGGTGTCGATCCTGCTGTCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCTG-TCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
31275116 ACCCTCGATCCGATCTGATCTTAGACTG
130 ACCCTCGATCCGATCTGATCTTAGACTG
* * * * * *
31275144 GGAATGAACTCCGTATGCCTAAG-TAACCCATGAAATGAGCGTTCGGGCGTTGAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAG
* *
31275208 AGGCATAATGCGCAAGCCGGGGATCGGCCCTGTCCCACTCTGCGTGCTGTC-AGT-CTCGCTGCC
66 AGGCAGAATGCGCAAGCCGGGGATCGG-CCTGTCCC-CCCTGCGTGCTGTCGA-TCCT-GCTGCC
* * * **
31275271 ACAACCCTC-AGTCTG-GCTGGGGCTTAGACAT-
127 GCAACCCTCGA-TCCGATCT-GATCTTAGAC-TG
* * *
31275302 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAG
* * *
31275367 -GGCAGAATGCGCAAGTCGAGGATCGGTCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCT-GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
* * *
31275431 ACCCTTGGTCC-AGTTTGATCTTAGACTG
130 ACCCTCGATCCGA-TCTGATCTTAGACTG
31275459 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
31275477 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 48, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
156 1 0.00
157 119 0.44
158 116 0.43
159 34 0.13
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCTGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAA
CCCTCGATCCGATCTGATCTTAGACTG
Found at i:31275486 original size:26 final size:26
Alignment explanation
Indices: 31275450--31275502 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31275440 CCAGTTTGAT
*
31275450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31275476 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31275502 C
1 C
31275503 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.