Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 340 of 402
Found at i:31276419 original size:159 final size:157
Alignment explanation
Indices: 31276150--31276485 Score: 383
Period size: 159 Copynumber: 2.1 Consensus size: 157
31276140 CTGGTCCTAT
* * * * *
31276150 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * * * * *
31276215 CAGTCGGAGAGGCATAATGCGCAAGCCGGAGATCGGCCCGATCCCCCTCTGTGTGCTGCCGGTCC
66 CAGCCGGAGAGGCAGAATGCACAAGCCGGAGATCGACCCGAT-CCCC-CTGCGTGCTGCCGATCC
*
31276280 CGCTGCCACAACCCTCGGTCTGGCTGGGG
129 CGCTACCACAACCCTCGGTCTGGCTGGGG
* * *
31276309 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* *
31276373 CCGGCCGGAGAGGCAGAATGCACAAGCCAGG-GATCTACCC-AGTCCCCCTGCGTGCTGCCGATC
65 CCAGCCGGAGAGGCAGAATGCACAAGCC-GGAGATCGACCCGA-TCCCCCTGCGTGCTGCCGATC
* * * * **
31276436 CTGCTACCGCAACCCTTGGTCCGGTCT-GAT
128 CCGCTACCACAACCCTCGGTCTGG-CTGGGG
31276466 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
31276486 TGTATGCTTA
Statistics
Matches: 149, Mismatches: 23, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
156 1 0.01
157 52 0.35
158 7 0.05
159 86 0.58
160 3 0.02
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
CAGCCGGAGAGGCAGAATGCACAAGCCGGAGATCGACCCGATCCCCCTGCGTGCTGCCGATCCCG
CTACCACAACCCTCGGTCTGGCTGGGG
Found at i:31276495 original size:26 final size:26
Alignment explanation
Indices: 31276466--31276518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31276456 CCGGTCTGAT
31276466 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
31276492 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31276518 C
1 C
31276519 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31279333 original size:881 final size:882
Alignment explanation
Indices: 31277542--31279349 Score: 2760
Period size: 881 Copynumber: 2.1 Consensus size: 882
31277532 TAGACTGGGG
* * * *
31277542 ATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGACGCTCAGCCGACCAGAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGACCAGAGAGG
* * *
31277607 CAGGATGCGCAAGCCGGGGATCGAACAGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTTTGC
66 CAGGATGCGCAAGCCGGAGATCGAACAGGTGGTAGGTGGGTTCAAGCACATCTTCATATATCTGC
*
31277672 CATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCCTATGCCTTCATGTGAAGT
131 CATGCCAATGCCATATTTATGGCCTGTAAATTCATACAATGGTCCCCTATGCCTTCATGTGAAGT
* *
31277737 TTCATGGCAAGACGACCCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTT
196 TTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCAAGATTT
* * *
31277802 TTTAAAATTTTTTTAGAAAACGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTT
261 TTTAAAATTTTTTTAGAAAACATTTTGTCCCCAAAATTGGTAGAGATGATCCTTGTATTTTTGTT
*
31277867 GGCATGCAAAAAAAATTCAGTTAAAAACTCAAAGTGGAGAAGATTTTGTCACCGTTTGAAAAAAG
326 GGCATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTCACCGTTTGAAAAAAG
31277932 TGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
391 TGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
* * *
31277997 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
456 AAGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACA
* * *
31278062 ACCATCGCACATCATGTAAGCACACCCCTCCAGCCCCCCCAATCGCCGGAACCCCCAATGCCACC
521 ACCATCGCACATCATGTAACCACACCCCTCCAGCCCCCCCAAGCACCGGAACCCCCAATGCCACC
* * * *
31278127 GATTAGGCTCTCCGGCGATGCTCCAACGATGGTGCCCCGGGTGAAAAAAATGCGGTACGAGCACA
586 GATTAGGCTCTCCGGCGATGCTCCAACGATGGTGCCCCGGGCGAAAAAAATACGGCACCAGCACA
* *
31278192 TGCCCGAGCCCAACATGTGCATCGTGGCTCAAAATATTAGACTGGGAATGAACTCCGTATGCTTC
651 TGCCCAAGCCCAACATGTGCACCGTGGCTCAAAATATTAGACTGGGAATGAACTCCGTATGCTTC
* * *
31278257 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGCCGAC
716 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTAAGCCAAC
* * * * *
31278322 TGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGCGTGCTGCTGATCCTACT
781 TGAAGAAGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTCCGTGCTGCCGATCCCACT
** * *
31278387 ACTGCAACCCTCAGTCCAGTTCAATCTTAGATCGGGA
846 ACCACAACCCTCAGTCCAGCTCAAGCTTAGATCGGGA
* *
31278424 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGAGCAGAGGGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGACCAGAGAGG
* *
31278489 CAGGATGCGCAAGCTGGAGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATATCTGC
66 CAGGATGCGCAAGCCGGAGATCGAACAGGTGGTAGGTGGGTTCAAGCACATCTTCATATATCTGC
**
31278554 CATGCCAATGCCATATTTATGGTGTGTAAATTCATACAATGGTCCCCTATGCCTTCATGTGAAGT
131 CATGCCAATGCCATATTTATGGCCTGTAAATTCATACAATGGTCCCCTATGCCTTCATGTGAAGT
* * * * ***
31278619 TTCGTGTCAAGATGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTTGGGATTT
196 TTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCAAGATTT
* * * *
31278684 TTTAAATTTTTTTTAGAAAGCATTTTGTCCCCAAAATTGGTAGAGATGATCCTTTTATTTTTTTT
261 TTTAAAATTTTTTTAGAAAACATTTTGTCCCCAAAATTGGTAGAGATGATCCTTGTATTTTTGTT
* * *
31278749 TGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAA
326 GGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTCACCGTTTGAAAAAA
* *
31278814 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAGATGCTCTTT
390 GTGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
31278879 AAAGAGGTGTGAGTTCTCGAA-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAA
455 AAAGAGGTGTGAGTTCTC-AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAA
* ** * * *
31278943 CAGCCATCGCACATCATGTGCCCACACCCC-CC-GGCCCCCCAAGCACCGGAACCCCTAATGCCG
519 CAACCATCGCACATCATGTAACCACACCCCTCCAGCCCCCCCAAGCACCGGAACCCCCAATGCCA
* * * * *
31279006 CTGGTTAGGCTCTCCGGTGATGCTCCAGCGATGGTGCCTCGGGCGAAAAAAATACGGCACCAGCA
584 CCGATTAGGCTCTCCGGCGATGCTCCAACGATGGTGCCCCGGGCGAAAAAAATACGGCACCAGCA
* *
31279071 CATGCCCAAGCCCAGCATGTGCCCCGTGGCTCAAAATATTAGACTGGGAATGAACTCCGTATGCT
649 CATGCCCAAGCCCAACATGTGCACCGTGGCTCAAAATATTAGACTGGGAATGAACTCCGTATGCT
31279136 TCGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTAAGCCA
714 TCGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTAAGCCA
* * *
31279201 ACTGAAGAAGCATAATGCGCAAGCCGTGGATCGGCCCGGTCCCCCTCTCCGTGCTGCCGGTCCCA
779 ACTGAAGAAGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTCCGTGCTGCCGATCCCA
* * ** *** *
31279266 CTGCCACAACCCTCGGTCTGGCTGGGGCTTAGA-CATGGA
844 CTACCACAACCCTCAGTCCAGCTCAAGCTTAGATC-GGGA
* * * * *
31279305 CTGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGG
1 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
31279350 GACTCAGTCA
Statistics
Matches: 834, Mismatches: 89, Indels: 7
0.90 0.10 0.01
Matches are distributed among these distances:
880 1 0.00
881 327 0.39
882 304 0.36
883 200 0.24
884 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (882 bp):
ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGACCAGAGAGG
CAGGATGCGCAAGCCGGAGATCGAACAGGTGGTAGGTGGGTTCAAGCACATCTTCATATATCTGC
CATGCCAATGCCATATTTATGGCCTGTAAATTCATACAATGGTCCCCTATGCCTTCATGTGAAGT
TTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCAAGATTT
TTTAAAATTTTTTTAGAAAACATTTTGTCCCCAAAATTGGTAGAGATGATCCTTGTATTTTTGTT
GGCATGCAAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTCACCGTTTGAAAAAAG
TGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
AAGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACA
ACCATCGCACATCATGTAACCACACCCCTCCAGCCCCCCCAAGCACCGGAACCCCCAATGCCACC
GATTAGGCTCTCCGGCGATGCTCCAACGATGGTGCCCCGGGCGAAAAAAATACGGCACCAGCACA
TGCCCAAGCCCAACATGTGCACCGTGGCTCAAAATATTAGACTGGGAATGAACTCCGTATGCTTC
GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTAAGCCAAC
TGAAGAAGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTCCGTGCTGCCGATCCCACT
ACCACAACCCTCAGTCCAGCTCAAGCTTAGATCGGGA
Found at i:31279514 original size:158 final size:158
Alignment explanation
Indices: 31279133--31279515 Score: 385
Period size: 158 Copynumber: 2.4 Consensus size: 158
31279123 AACTCCGTAT
* * * * *
31279133 GCTTCGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTAAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
31279198 CCAACTGAAGAAGCATAATGCGCAAGCCGTGGATCGGCCCGGTCCCCCTCTCCGTGCTGCCGGTC
65 CCAACTGAAGAAGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTCCGTGCTGCCGATC
** ***
31279263 CCACTGCCACAACCCTCGGTCTGGCTGGG
130 CCACTGCCACAACCCTCGGTCCAGCTCAA
* * * * *
31279292 GCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGG-GACTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG-CTCA
* ** * * *
31279356 GTCAGTTAGAA-AGGTAGAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGA
64 GCCAACT-GAAGAAGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTCCGTGCTGCCGA
** * *
31279419 TCCTGCTGCCGCAACCCTCGGTCCAGTTCAA
128 TCCCACTGCCACAACCCTCGGTCCAGCTCAA
* * * *
31279450 TCTTGGACTGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
31279515 C
65 C
31279516 TGACCAGAGG
Statistics
Matches: 178, Mismatches: 41, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.01
158 87 0.49
159 86 0.48
160 4 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAACTGAAGAAGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTCCGTGCTGCCGATCC
CACTGCCACAACCCTCGGTCCAGCTCAA
Found at i:31280074 original size:11 final size:11
Alignment explanation
Indices: 31280058--31280082 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
31280048 CGGTTAGGCT
31280058 CTCCGACGATG
1 CTCCGACGATG
31280069 CTCCGACGATG
1 CTCCGACGATG
31280080 CTC
1 CTC
31280083 TGGTGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:31280505 original size:26 final size:26
Alignment explanation
Indices: 31280476--31280528 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31280466 CCGATCTGAT
31280476 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
31280502 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31280528 C
1 C
31280529 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31281392 original size:26 final size:26
Alignment explanation
Indices: 31281356--31281408 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31281346 CCGGTTTGAT
*
31281356 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
31281382 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
31281408 C
1 C
31281409 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:31286956 original size:26 final size:26
Alignment explanation
Indices: 31286927--31286980 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
31286917 GGTCTGATCT
*
31286927 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
31286953 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
31286979 TA
1 TA
31286981 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:31287321 original size:26 final size:26
Alignment explanation
Indices: 31287292--31287342 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31287282 CGGTCCTATC
31287292 TTAGAC-TGGGAATGAACTCCGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
31287318 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
31287343 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:31287585 original size:158 final size:158
Alignment explanation
Indices: 31287318--31287734 Score: 430
Period size: 159 Copynumber: 2.6 Consensus size: 158
31287308 CTCCGTATGT
* * * *
31287318 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCACTCAGTT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG-C
* * * * *
31287383 GGTCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCAAATCCCCC-CTGCTTGCTA-TCGATCC
65 CGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCAAATCCCCCTCTGCGTGCTACT-GATCC
* * *
31287446 TACTACCGCAACCCTCGGTCTGGTCT-GATC
129 CACTACCACAACCCTCGGTCTGG-CTAGAGC
* *
31287476 TTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *** *
31287540 CAATCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTACTGGTCC
65 C-GTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCAAATCCCCCTCTGCGTGCTACTGATCC
** * *
31287605 CGTTGCCACAACCCTCGGTCTGGCTAGGGC
129 CACTACCACAACCCTCGGTCTGGCTAGAGC
* * * * * * **
31287635 GTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACAAGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
*
31287700 GGCTGGAGAGGCAGAATGCGCAAGGT-GGGGATCGA
66 GTC-GGAGAGGCAGAATGCGCAA-GTCGGGGATCGA
31287735 ACGGGTGGTA
Statistics
Matches: 212, Mismatches: 39, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 95 0.45
159 112 0.53
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
GTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCAAATCCCCCTCTGCGTGCTACTGATCCCA
CTACCACAACCCTCGGTCTGGCTAGAGC
Found at i:31288367 original size:26 final size:26
Alignment explanation
Indices: 31288330--31288381 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31288320 GCTCAAAATT
*
31288330 TTAGACTAAGAATGAACTTCGTATGC
1 TTAGACTAAGAATGAACTCCGTATGC
31288356 TTAGAC-ATAGAATGAACTCCGTATGC
1 TTAGACTA-AGAATGAACTCCGTATGC
31288382 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (26 bp):
TTAGACTAAGAATGAACTCCGTATGC
Found at i:31288657 original size:159 final size:156
Alignment explanation
Indices: 31288354--31289015 Score: 652
Period size: 159 Copynumber: 4.2 Consensus size: 156
31288344 AACTTCGTAT
* * * * * *
31288354 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCATGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
31288419 CCGG-TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCACCCCTACGTGTTGTCGAT
66 CCGGCT-GGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCTGATCC-CCCTTACGTGCTGTCGAT
** * *
31288483 CCTGCTGCCGCAACCCTTGGTCCGGTCCGA
128 CCTGCTGCCATAACCCTCGGTCCGG-CTGA
* * * * *
31288513 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
31288577 GCCGACTGAAAAGGCATAATGCGCAAGTCGGGCATCGG-CTCGATCCCCCTCTACGTCCTGTCGG
65 GCCGGCTGGAGAGGCAGAATGCGCAAGCCGGG-ATCGGCCT-GATCCCCCT-TACGTGCTGTCGA
* *
31288641 TCCCGCTACCATAACCCTCGGTCCGGCTGCA
127 TCCTGCTGCCATAACCCTCGGTCCGGCTG-A
* **
31288672 GCTTAGACATGGAATGAACT-CGCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCAAGCGCTC
1 GCTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTC
* * * * **
31288735 ATCCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTTGCGTGCTACCGAT
64 AGCCGGCTGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCTGATCCCCCTTACGTGCTGTCGAT
31288800 CCTGCTGCCATAACCCTCGGTCCGGCTGA
128 CCTGCTGCCATAACCCTCGGTCCGGCTGA
* * * *
31288829 GGCTTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
31288894 ACCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCCCGATCCCCCTTGCGTGCTGTCGATC
65 GCCGGCTGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCTGATCCCCCTTACGTGCTGTCGATC
* * * * *
31288959 CTGCTGCCGTTACCTTCGGTCTGGTTTGA
129 CTGCTGCCATAACCCTCGGTCCGG-CTGA
* *
31288988 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31289016 TTAGATTAGG
Statistics
Matches: 411, Mismatches: 75, Indels: 35
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.01
158 199 0.48
159 202 0.49
160 7 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCTGATCCCCCTTACGTGCTGTCGATCCT
GCTGCCATAACCCTCGGTCCGGCTGA
Found at i:31288940 original size:317 final size:318
Alignment explanation
Indices: 31288354--31288943 Score: 726
Period size: 317 Copynumber: 1.9 Consensus size: 318
31288344 AACTTCGTAT
* * ** * *
31288354 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCATGCGGGTGCTTAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGCAAGCGCTCAG
* * * **
31288419 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCACCCCTACGTGTTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCTGGTCCACCCCTACGTGCTACCGATC
* * * * *
31288484 CTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
131 CTGCTGCCACAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCA
* * * * *
31288549 ACCCACGAAACGAGCGTGTGGGCGCTGAGCCGACTGAAAAGGCATAATGCGCAAGTCGGGCATCG
196 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGAAAAGGCAGAATGCGCAAGTCGGGCATCG
*
31288614 GCTCGATCCCCCTCTACGTCCTGTCGGTCCCGCTACCATAACCCTCGGTCCGGCTGCA
261 GCCCGATCCCCCTCTACGTCCTGTCGGTCCCGCTACCATAACCCTCGGTCCGGCTGCA
* * *
31288672 GCTTAGACATGGAATGAACT-CGCTATGCCTAAGCCAACCCATGAAACAG-GCGTGCAAGCGCTC
1 GCTTAGACATAGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAA-AGAGCATGCAAGCGCTC
* * * *
31288735 ATCCGG-CTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCTGGTCC-CCCTTGCGTGCTACCG
64 AGCCGGTC-GGAGAGGCAGAATGCACAAGCCAGGGATCAGCCTGGTCCACCCCTACGTGCTACCG
* * * *
31288798 ATCCTGCTGCCATAACCCTCGGTCCGG-CTGAGGCTTTGACAT-GGAATGAACTCCCTATGCCTA
128 ATCCTGCTGCCACAACCCTCGGTCCGGTCCGA-GCTTAGAC-TGGGAATGAACTCCCTATGCATA
* * * * *
31288861 AGCCAACCCACGAAACGGGTGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGAG
191 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGAAAAGGCAGAATGCGCAAGTCG-G
*
31288926 G-ATTGGCCCGATCCCCCT
255 GCATCGGCCCGATCCCCCT
31288944 TGCGTGCTGT
Statistics
Matches: 227, Mismatches: 39, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
316 3 0.01
317 130 0.57
318 93 0.41
319 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (318 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGCAAGCGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCTGGTCCACCCCTACGTGCTACCGATC
CTGCTGCCACAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCA
ACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGAAAAGGCAGAATGCGCAAGTCGGGCATCG
GCCCGATCCCCCTCTACGTCCTGTCGGTCCCGCTACCATAACCCTCGGTCCGGCTGCA
Found at i:31289377 original size:26 final size:26
Alignment explanation
Indices: 31289348--31289400 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31289338 CCGGTCTGAT
31289348 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31289374 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31289400 C
1 C
31289401 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31289535 original size:184 final size:184
Alignment explanation
Indices: 31289189--31289550 Score: 411
Period size: 184 Copynumber: 2.0 Consensus size: 184
31289179 TCCAGCTGGG
* * *
31289189 GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCGCTCAG
* * * * * * *
31289254 CTGGCCGGAGAGACAAAATGTGCAAGTCGAGGATCGTCTCGATCCCCCCTACGTGCTGTCGATCC
66 CCGACCGGAGAGACAAAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTATCGATCC
* * * *
31289319 TGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
131 TACTGCCGTAACCCTAGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* * *
31289373 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGCGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCGCTCAG
* ** * * * * ** *
31289438 CCGACCGTAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGTTATCGATCC
66 CCGACCGGAGAGACAAAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTATCGATCC
* * * * * *
31289503 TACTGTCGCT-CCCCTAGGTTCGATCCGATCTTAGATTGGGAATGAACT
131 TACTGCCG-TAACCCTAGATCCGATCCGATCTTAGACTAGGAATGAACT
31289551 TCATATGCCT
Statistics
Matches: 144, Mismatches: 33, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
184 143 0.99
185 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCGCTCAG
CCGACCGGAGAGACAAAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTATCGATCC
TACTGCCGTAACCCTAGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:31289748 original size:159 final size:157
Alignment explanation
Indices: 31289373--31289818 Score: 430
Period size: 159 Copynumber: 2.8 Consensus size: 157
31289363 AACTCCGTAT
* * *
31289373 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGCGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
31289438 CCGACCGTAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGTTATCGATCC
66 CCGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGTGCT-GATCC
* ** * ** * *
31289503 TACTGTCGCTCCCCTAGGTTCGATCCGA
130 CACTACCACAACCCTAGGTCCGATCAGA
* * * * *
31289531 TCTTAGA-TTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * *
31289595 GCCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTGAT
65 GCCGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTG-TGCTGAT
* * * *
31289660 CCCATTACCACAACCCTCGGTCC-AGTTAGG
128 CCCACTACCACAACCCTAGGTCCGA-TCAGA
* * * * * * *
31289690 GCTTAGACCTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
31289755 CCGACCAGAGAGGCAGAATGAGCAAGCTGGGGATTAGCCTC-GTCCCCCCTGCGTGTGCCGATCC
66 CCGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCC-CGGTCCCCCCTGCGTGTGCTGATCC
31289819 TGTTGCCGCA
Statistics
Matches: 232, Mismatches: 50, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
157 9 0.04
158 104 0.45
159 115 0.50
160 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGTGCTGATCCC
ACTACCACAACCCTAGGTCCGATCAGA
Found at i:31289877 original size:26 final size:26
Alignment explanation
Indices: 31289848--31289900 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31289838 CCGGTCTGAT
* * *
31289848 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
31289874 CTTAGACTGGGGAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
31289900 C
1 C
31289901 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:31296411 original size:11 final size:11
Alignment explanation
Indices: 31296395--31296450 Score: 69
Period size: 11 Copynumber: 5.0 Consensus size: 11
31296385 CGGTTAGGCT
*
31296395 CTCCGACGGTG
1 CTCCGACGATG
*
31296406 CTCCGAAAGATG
1 CTCCG-ACGATG
31296418 CTCCGAC-AGTG
1 CTCCGACGA-TG
31296429 CTCCGACGATG
1 CTCCGACGATG
31296440 CTCCGACGATG
1 CTCCGACGATG
31296451 GTGCCCCAGG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
10 1 0.03
11 28 0.72
12 10 0.26
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:31296424 original size:23 final size:22
Alignment explanation
Indices: 31296395--31296447 Score: 79
Period size: 23 Copynumber: 2.4 Consensus size: 22
31296385 CGGTTAGGCT
31296395 CTCCGACGGTGCTCCGAAAGATG
1 CTCCGACGGTGCTCCG-AAGATG
* *
31296418 CTCCGACAGTGCTCCGACGATG
1 CTCCGACGGTGCTCCGAAGATG
31296440 CTCCGACG
1 CTCCGACG
31296448 ATGGTGCCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.17
Consensus pattern (22 bp):
CTCCGACGGTGCTCCGAAGATG
Found at i:31296837 original size:159 final size:155
Alignment explanation
Indices: 31296555--31297046 Score: 526
Period size: 159 Copynumber: 3.1 Consensus size: 155
31296545 GCCTAGACAT
** * *
31296555 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGATCAGAA
1 GGAATGAACTCCGTATG-CTAAGTGAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGA-CCGAA
** * * * *
31296620 AGGTAGAATGCGCAAGTTGGGGATCGGTCCAGTCCCCCCCTACGTGCTGTCGATCCTGCTGCCGC
64 AGGTAGAATGCGCAAGCCGGGGATTGATCCAGT--CCCCCTGCGTGCTGTCGATCCTGCTGCCAC
*
31296685 AACCCTCGGTCCGATCCAATCTTAGACTA
127 AACCCTCGGTCCGATCCGATCTTAGACTA
** * *
31296714 GGAATGAACTCCGTATGCATAAGTGAACTAACGAAATGAGCGTGCAGGTGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGC-TAAGTGAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGACCGAA-
* * *
31296779 AGGT-GTAATGCGCAAGCCGGGGATTGACCCAGTCCCCTTCTGCGTGCTG-CCAGTCCTGCTACC
64 AGGTAG-AATGCGCAAGCCGGGGATTGATCCAGTCCCC--CTGCGTGCTGTCGA-TCCTGCTGCC
* * ** *
31296842 ACAACCCTCGGTCTGGTTGGAGCTTAGAC-A
125 ACAACCCTCGGTCCGATCCGATCTTAGACTA
* * * * * *
31296872 TGGAATGAACTCCCTATG--AAGTGAACCCACGAAAAGGGCATGCGGGTGCTCAGTCGGCCGAAA
1 -GGAATGAACTCCGTATGCTAAGTGAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGACCG-AA
* * * *
31296935 AGGTAGAATGCACAAGCCGAGGATTGATCCGGTTCCCCCTGCGTGCTGTCGATCCTGTTGCCACA
64 AGGTAGAATGCGCAAGCCGGGGATTGATCCAG-TCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
*
31297000 ACCCTCGGTCCGATCCGATCTTAGACTG
128 ACCCTCGGTCCGATCCGATCTTAGACTA
31297028 GGAATGAACTCCGTATGCT
1 GGAATGAACTCCGTATGCT
31297047 TAGACTAGGG
Statistics
Matches: 272, Mismatches: 47, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
155 58 0.21
156 61 0.22
157 12 0.04
158 9 0.03
159 132 0.49
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (155 bp):
GGAATGAACTCCGTATGCTAAGTGAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGACCGAAAG
GTAGAATGCGCAAGCCGGGGATTGATCCAGTCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACC
CTCGGTCCGATCCGATCTTAGACTA
Found at i:31297034 original size:155 final size:154
Alignment explanation
Indices: 31296655--31297044 Score: 435
Period size: 156 Copynumber: 2.5 Consensus size: 154
31296645 GGTCCAGTCC
* * *
31296655 CCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATG
1 CCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACT-GGAATG
* * * * *
31296720 AACTCCGTATGCATAAGTGAACTAACGAAATGAGCGTGCAGGTGCTGAGCCGACCGAAGAGGTGT
65 AACTCCGTATG-A-AAGTGAACCAACGAAAAGAGCATGCAGGTGCTCAGCCGACCGAAAAGGTGT
* *
31296785 AATGCGCAAGCCGGGGATTGACCCAGT
128 AATGCACAAGCCGAGGATTGACCCAGT
* * * * ** *
31296812 CCCCTTCTGCGTGCTG-CCAGTCCTGCTACCACAACCCTCGGTCTGGTTGGAGCTTAGACATGGA
1 CCCC--CTGCGTGCTGTCGA-TCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGAC-TGGA
* * * * * *
31296876 ATGAACTCCCTATG-AAGTGAACCCACGAAAAGGGCATGCGGGTGCTCAGTCGGCCGAAAAGGTA
62 ATGAACTCCGTATGAAAGTGAACCAACGAAAAGAGCATGCAGGTGCTCAGCCGACCGAAAAGGT-
* *
31296940 G-AATGCACAAGCCGAGGATTGATCCGGTT
126 GTAATGCACAAGCCGAGGATTGACCCAG-T
*
31296969 CCCCCTGCGTGCTGTCGATCCTGTTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
1 CCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACT-GGAATG
31297034 AACTCCGTATG
65 AACTCCGTATG
31297045 CTTAGACTAG
Statistics
Matches: 191, Mismatches: 34, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
154 1 0.01
155 58 0.30
156 63 0.33
157 10 0.05
158 2 0.01
159 56 0.29
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (154 bp):
CCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGAATGA
ACTCCGTATGAAAGTGAACCAACGAAAAGAGCATGCAGGTGCTCAGCCGACCGAAAAGGTGTAAT
GCACAAGCCGAGGATTGACCCAGT
Found at i:31297070 original size:26 final size:26
Alignment explanation
Indices: 31297019--31297070 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31297009 CCGATCCGAT
*
31297019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31297045 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCCATATG
31297071 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31297427 original size:26 final size:26
Alignment explanation
Indices: 31297398--31297450 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31297388 CCGATCTTAT
31297398 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
31297424 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31297450 C
1 C
31297451 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31297934 original size:26 final size:26
Alignment explanation
Indices: 31297898--31297950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31297888 CCGGTCCGAT
31297898 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31297924 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31297950 C
1 C
31297951 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31298974 original size:159 final size:158
Alignment explanation
Indices: 31298653--31299081 Score: 405
Period size: 159 Copynumber: 2.7 Consensus size: 158
31298643 ATGAACTTTG
* * * * * * * * *
31298653 TATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGC
1 TATGCATAAGCCAACCCACAAAACGAGCATGCGGACGCTCAACCGACCGAAGAGGCAGAATGCGC
* * * * * * *** * **
31298718 AAGTCGGGGATCGGTCCGGTCCCCCGTGCGTGCTGTCCATCCTGCTGCTGTAACCCTCGGTCCGA
66 AAGCCGGGAATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAACCTTCAATCCGA
*** **
31298783 -TCCAATCTTAGACTGAGAATGAACTCGG
131 CTCC-GGGTTAGACTGAGAATGAACTCCC
* * * * * * * * * *
31298811 TATGCATAAGTCAACCCACGAAACGAGCGTGTGGATGCTGAGCTGGCCGAAGAGGCATAATGCGC
1 TATGCATAAGCCAACCCACAAAACGAGCATGCGGACGCTCAACCGACCGAAGAGGCAGAATGCGC
*
31298876 AAGCCAGGG-CTCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCTTCAATCC
66 AAGCC-GGGAATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCCGCTGCCACAACCTTCAATCC
31298940 GACTCCGGGTTAGACATG-GAATGAACTCCC
129 GACTCCGGGTTAGAC-TGAGAATGAACTCCC
* * * * *
31298970 TATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGC
1 TATGCATAAGCCAACCCACAAAACGAGCATGCGGACGCTCAACCGACCGAAGAGGCAGAATGCGC
* *
31299035 AAGCCGGGAATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTG
66 AAGCCGGGAATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTG
31299082 TCGCAACCCT
Statistics
Matches: 218, Mismatches: 48, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
158 94 0.43
159 119 0.55
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
TATGCATAAGCCAACCCACAAAACGAGCATGCGGACGCTCAACCGACCGAAGAGGCAGAATGCGC
AAGCCGGGAATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAACCTTCAATCCGA
CTCCGGGTTAGACTGAGAATGAACTCCC
Found at i:31301208 original size:26 final size:25
Alignment explanation
Indices: 31301167--31301218 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
31301157 GGTTCAAACT
31301167 CTTAGACTAGAATGAACTCCGTATG
1 CTTAGACTAGAATGAACTCCGTATG
* *
31301192 CTTAGACATGGAATGAACTCCTTATG
1 CTTAGAC-TAGAATGAACTCCGTATG
31301218 C
1 C
31301219 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCGTATG
Found at i:31301538 original size:26 final size:26
Alignment explanation
Indices: 31301509--31301561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31301499 CCGATCTGAT
*
31301509 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31301535 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31301561 C
1 C
31301562 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31301733 original size:26 final size:26
Alignment explanation
Indices: 31301704--31301756 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31301694 CCGGTCTGAT
31301704 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31301730 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31301756 C
1 C
31301757 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31301852 original size:195 final size:195
Alignment explanation
Indices: 31301488--31301856 Score: 501
Period size: 195 Copynumber: 1.9 Consensus size: 195
31301478 CCTGCTGCCA
* *
31301488 CAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
1 CAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * ** *
31301553 TCCGTATGCCTAAGTCAACCCATGAAATGAGCATATGGGTGCTCAGTCGGCTGGAGAGGCAGATG
66 TCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCGCTCAGCCGGCTGGAGAGGCAGATG
* * *
31301618 CACAAGTCGGGGATCGACCTGATCCCCCCTGCGTGCTGTCGATCCTACTACTAGTCCTGTTGTCG
131 CACAAGCCGGGGATCGACCAGATCCCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGTTGTCG
** *
31301683 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAA
1 CAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAA
* * *
31301747 CTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTACGGCCGCTCAGCCGG-TCGGAGAGGTAGA
65 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCGCTCAGCCGGCT-GGAGAGGCAG-
* * *
31301811 ATGCACAAGCCGGGGATTGGCCAG-TCCCCCTTGCATGCTGTCGATC
128 ATGCACAAGCCGGGGATCGACCAGATCCCCCCTGCATGCTGTCGATC
31301857 TTGCTGCAGC
Statistics
Matches: 150, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
194 1 0.01
195 128 0.85
196 21 0.14
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (195 bp):
CAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCGCTCAGCCGGCTGGAGAGGCAGATG
CACAAGCCGGGGATCGACCAGATCCCCCCTGCATGCTGTCGATCCTACTACTAGTCCTGTTGTCG
Found at i:31302084 original size:158 final size:157
Alignment explanation
Indices: 31301729--31302142 Score: 422
Period size: 158 Copynumber: 2.6 Consensus size: 157
31301719 AACTCCGTAT
* *
31301729 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTACGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAG
* * * * * ** **
31301794 CCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATTGGCCAGTCCCCCTTGCATGCTGTCGATCTT
66 CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCAGTCCCCCTTGCATGCTACCGATCCC
* * *
31301859 GCTGCAGCAACCCTCGGTCTGTTCTGA
131 GCTGCAGCAACCCTCGATCCGTACTGA
* * * * * *
31301886 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCA
* * * * ** *
31301950 GCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGTCCCCTTCTGTGTGCTACCGGTC
65 GCCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCAGTCCCCCT-TGCATGCTACCGATC
*
31302015 CCGCTGCCA-CAACCCTCGATCCG-ACTGGG
129 CCGCTG-CAGCAACCCTCGATCCGTACT-GA
* * ** *
31302044 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAG
* ** * *
31302109 CTGGCCGGAAAGGCAGAATGCACAAGAC-AGGATC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATC
31302143 AACCCGATTC
Statistics
Matches: 209, Mismatches: 43, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
156 1 0.00
157 102 0.49
158 103 0.49
159 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGCCGCTCAG
CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCAGTCCCCCTTGCATGCTACCGATCCC
GCTGCAGCAACCCTCGATCCGTACTGA
Found at i:31302235 original size:26 final size:26
Alignment explanation
Indices: 31302206--31302284 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
31302196 CCGGTCTGAT
*
31302206 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
31302232 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
31302258 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
31302284 C
1 C
31302285 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:31310421 original size:26 final size:26
Alignment explanation
Indices: 31310385--31310437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31310375 ACGGTTCGAT
31310385 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31310411 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31310437 C
1 C
31310438 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31311150 original size:26 final size:27
Alignment explanation
Indices: 31311108--31311161 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
31311098 GGCTCAAAAT
31311108 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAATGAACATCCGTATG
*
31311134 CTTAGACAT-GGATTGAACATCCGTATG
1 CTTAGAC-TGGGAATGAACATCCGTATG
31311161 C
1 C
31311162 CTAATCCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACATCCGTATG
Found at i:31312409 original size:26 final size:26
Alignment explanation
Indices: 31312371--31312423 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31312361 GGCTCAAAAT
*
31312371 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31312397 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31312423 C
1 C
31312424 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31312697 original size:158 final size:158
Alignment explanation
Indices: 31312397--31312889 Score: 397
Period size: 158 Copynumber: 3.1 Consensus size: 158
31312387 ACTTCGTATG
* * * * * *
31312397 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* ** * * *
31312462 CGGTCGAAGAGGCAAAATGTGCAAGCTGGGGATCAGCCCGATCCCCCCTGTGTGCTGTCAATCCT
66 CGCTCGAAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCCC
***
31312527 ACTGCTGTAACCCTCGGTCTGGTCTGAT
131 ACTGCCACAACCCTCGGTCTGGTCTGAT
* * *
31312555 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACTAGCATGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* * * * * **
31312620 CGACT-GAAGAGGCATAATGCACAAGCCGTGGATCGGCCTGATCCCCTCTGCGTGCTGTCGGTCC
66 CG-CTCGAAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * *** **
31312684 CGCTGCCACAACCCTCGATC-CAACTGGGG
130 CACTGCCACAACCCTCGGTCTGGTCT-GAT
* * * * * **
31312713 CTTAGACAT-GGAATGAACTCCCTATACCTAAGCCAACCCATGAAACG-GACTTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAG-CATGCGGGCACTCA
* * * * * *
31312776 GCCGGC-CAGAA-AGGTAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGCCAA
64 GCC-GCTC-GAAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAA
** * ** **
31312839 TCCTGCTACCGTAACCCTCGGTCCAGT-TCGAT
127 TCCCACTGCCACAACCCTCGGTCTGGTCT-GAT
*
31312871 CTTAGATTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
31312890 TCGTATGCTT
Statistics
Matches: 260, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 250 0.96
159 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CGCTCGAAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCCC
ACTGCCACAACCCTCGGTCTGGTCTGAT
Found at i:31312900 original size:26 final size:26
Alignment explanation
Indices: 31312871--31312923 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31312861 CCAGTTCGAT
* *
31312871 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31312897 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31312923 C
1 C
31312924 CGAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31313293 original size:26 final size:26
Alignment explanation
Indices: 31313251--31313303 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31313241 TCGGTTTGAT
31313251 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31313277 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31313303 C
1 C
31313304 CTAAGCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31313665 original size:157 final size:156
Alignment explanation
Indices: 31313276--31313722 Score: 417
Period size: 157 Copynumber: 2.8 Consensus size: 156
31313266 AACTCCGTAT
* * * *
31313276 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCAA-CCATGAAACAAGCGAGCGGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * *
31313340 CAACCTGAAAAGGCAGAATGCGTAAGCCGGAGATCG-GCCCAGTCCCCCCTGCGTGCTATCGATC
66 C-A--TGGAGAGGCAGAATGCGCAAGCCGGGGATCGAG-CCAGTCCCCCCTGCGTGCTATCGATC
* *
31313404 CTGCTACCAACAACCCTTGGTCCGATCCGG
127 CTACTACCAACAACCCTCGGTCCGATCCGG
* * * * * *
31313434 TCTTAGA-TTGGAAATGAACTACGTATGCCTAAGTCAACCCACG-AACGAGCGTGCAAGCGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * *
31313497 GCCTTCCGGAGAGGCATAAAGCGCAAGTCGGGGATCGAG-CGGTCCCCCTCTGCGTGCTATCGGT
64 GCCAT--GGAGAGGCAGAATGCGCAAGCCGGGGATCGAGCCAGTCCCCC-CTGCGTGCTATCGAT
* * **
31313561 CC-ACTGCC-ACAACCCTCGGTCCGGCTGGGG
126 CCTACTACCAACAACCCTCGGTCC-GATCCGG
* * *
31313591 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * *
31313656 CCGATGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCTGATCCCCGCTGCGTGCTACCG-TCC
65 CC-ATGGAGAGGCAGAATGCGCAAGCCGGGGATCGAGCCAG-TCCCCCCTGCGTGCTATCGATCC
31313719 TACT
128 TACT
31313723 GTCGTAACCC
Statistics
Matches: 231, Mismatches: 44, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
156 17 0.07
157 96 0.42
158 91 0.39
159 23 0.10
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CATGGAGAGGCAGAATGCGCAAGCCGGGGATCGAGCCAGTCCCCCCTGCGTGCTATCGATCCTAC
TACCAACAACCCTCGGTCCGATCCGG
Found at i:31313732 original size:157 final size:152
Alignment explanation
Indices: 31313276--31313774 Score: 405
Period size: 157 Copynumber: 3.2 Consensus size: 152
31313266 AACTCCGTAT
* * * *
31313276 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCAA-CCATGAAACAAGCGAGCGGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
31313340 CAACCTGAAAAGGCAGAATGCGTAAGCCGGAGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCC
66 C-A--TGGAGAGGCAGAATGCGCAAGCCGG-GATCGACCGA-TCCCCCCTGCGTGCTACCG-TCC
* * *
31313405 TGCTACCAACAACCCTTGGTCCGATCCGG
125 TACTGCC-ACAACCCTCGGTCCGATCCGG
* * * * * *
31313434 TCTTAGA-TTGGAAATGAACTACGTATGCCTAAGTCAACCCACG-AACGAGCGTGCAAGCGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * * *
31313497 GCCTTCCGGAGAGGCATAAAGCGCAAGTCGGGGATCGAGCGGTCCCCCTCTGCGTGCTATCGGTC
64 GCCAT--GGAGAGGCAGAATGCGCAAG-CCGGGATCGACCGATCCCCC-CTGCGTGCTA-CCGTC
* **
31313562 C-ACTGCCACAACCCTCGGTCCGGCTGGGG
124 CTACTGCCACAACCCTCGGTCC-GATCCGG
* * *
31313591 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCAGGCGCTCAG
*
31313656 CCGATGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCGCTGCGTGCTACCGTCCTA
65 CC-ATGGAGAGGCAGAATGCGCAAGCCG-GGATCGACC-GATCCCCCCTGCGTGCTACCGTCCTA
* ** ** * **
31313721 CTGTCGTAACCCTCGGTTTGGTCCAA
127 CTGCCACAACCCTCGGTCCGATCCGG
*
31313747 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31313775 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 59, Indels: 34
0.74 0.16 0.09
Matches are distributed among these distances:
155 1 0.00
156 47 0.18
157 101 0.38
158 87 0.33
159 26 0.10
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (152 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CATGGAGAGGCAGAATGCGCAAGCCGGGATCGACCGATCCCCCCTGCGTGCTACCGTCCTACTGC
CACAACCCTCGGTCCGATCCGG
Found at i:31313784 original size:26 final size:26
Alignment explanation
Indices: 31313748--31313800 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31313738 TTGGTCCAAT
*
31313748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31313774 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31313800 C
1 C
31313801 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31317743 original size:26 final size:26
Alignment explanation
Indices: 31317707--31317759 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31317697 TCGACCCGAT
*
31317707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
31317733 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
31317759 C
1 C
31317760 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:31318807 original size:26 final size:26
Alignment explanation
Indices: 31318769--31318821 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31318759 GGCTCAAAAT
31318769 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31318795 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
31318821 C
1 C
31318822 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31319671 original size:26 final size:26
Alignment explanation
Indices: 31319629--31319681 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31319619 TCGGTCCGAT
31319629 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
31319655 CTTAGACAT-GGATTGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
31319681 C
1 C
31319682 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31320168 original size:26 final size:26
Alignment explanation
Indices: 31320129--31320181 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31320119 CTAGTCTGAT
*
31320129 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTACGAATGAACTCT-GTATG
31320155 CTTAGACTACGAATGAACTCTGTATG
1 CTTAGACTACGAATGAACTCTGTATG
31320181 C
1 C
31320182 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCTGTATG
Found at i:31321240 original size:25 final size:26
Alignment explanation
Indices: 31321205--31321256 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
31321195 CTGGTCTAAT
31321205 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31321230 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31321256 C
1 C
31321257 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31321965 original size:159 final size:158
Alignment explanation
Indices: 31321597--31322008 Score: 379
Period size: 159 Copynumber: 2.6 Consensus size: 158
31321587 CTCTGTATGG
* *
31321597 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGATATGAGCGTGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
* * * * ***
31321662 GGTCGGAGAGGCAGAATACGCAAGCCGGGGACTGGCTTGATCCCCCTCGTGTGCTGTCGATCCTG
66 GCTCGAAAAGGCAGAATACGCAAGCCAGGGACTGGCCCAATCCCCCTCGTGTGCTGTCGATCCTG
* * * *
31321727 TTGCCGCAACCCTCAATCCGGTCCGATC
131 CTGCCACAACCCTCAATCCGCTCCGAGC
*** ** ** *
31321755 TTAGAC-TGGGAATGAACTTTGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * * *
31321819 CGACT-GAAAAGGCATAATGCGTAAGTCAGTGATTTGCCCAATCCCCCTC-TGCATGCTGTCGGT
65 CG-CTCGAAAAGGCAGAATACGCAAGCCAGGGACTGGCCCAATCCCCCTCGTG--TGCTGTCGAT
** * *
31321882 -CTCGCTGCCACAACCCTCGGTCCAGCT-GGGGC
127 CCT-GCTGCCACAACCCTCAATCC-GCTCCGAGC
*
31321914 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
* * *
31321979 AGCT-GGAGAGGCAGAATGCGCAAGCC-GGGA
66 -GCTCGAAAAGGCAGAATACGCAAGCCAGGGA
31322009 TCGACCCGAT
Statistics
Matches: 198, Mismatches: 48, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 90 0.45
159 101 0.51
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
GCTCGAAAAGGCAGAATACGCAAGCCAGGGACTGGCCCAATCCCCCTCGTGTGCTGTCGATCCTG
CTGCCACAACCCTCAATCCGCTCCGAGC
Found at i:31322024 original size:159 final size:155
Alignment explanation
Indices: 31321597--31322055 Score: 415
Period size: 158 Copynumber: 2.9 Consensus size: 155
31321587 CTCTGTATGG
* *
31321597 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGATATGAGCGTGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
* * * **
31321662 GGTCGGAGAGGCAGAATACGCAAGCCGGGGACTGGCTTGATCCCCCTCGTGTGCTGTCGATCCTG
66 GCT-GGAGAGGCAGAATGCGCAAGCC-GGGA-TCGCCCGATCCCCCTCGTGTGCTGTCGATCCTG
* * * *
31321727 TTGCCGCAACCCTCAATCCGGTCCGATC
128 CTGCCACAACCCTCAATCCGCTCCGAGC
*** ** ** *
31321755 TTAGAC-TGGGAATGAACTTTGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * * * *
31321819 CGACTGAAAAGGCATAATGCGTAAGTCAGTGATTTGCCCAATCCCCCTC-TGCATGCTGTCGGT-
65 CG-CTGGAGAGGCAGAATGCGCAAG-CCGGGA-TCGCCCGATCCCCCTCGTG--TGCTGTCGATC
** * *
31321882 CTCGCTGCCACAACCCTCGGTCCAGCT-GGGGC
125 CT-GCTGCCACAACCCTCAATCC-GCTCCGAGC
*
31321914 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
* * *
31321979 AGCTGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGGTCCTG
66 -GCTGGAGAGGCAGAATGCGCAAGCCGGGATCG-CCCGATCCCCCTC-GTGTGCTGTCGATCCTG
**
31322043 CTGCTGCAACCCT
128 CTGCCACAACCCT
31322056 TGGTCTGGTC
Statistics
Matches: 235, Mismatches: 53, Indels: 27
0.75 0.17 0.09
Matches are distributed among these distances:
157 27 0.11
158 102 0.43
159 102 0.43
160 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (155 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
GCTGGAGAGGCAGAATGCGCAAGCCGGGATCGCCCGATCCCCCTCGTGTGCTGTCGATCCTGCTG
CCACAACCCTCAATCCGCTCCGAGC
Found at i:31322746 original size:26 final size:26
Alignment explanation
Indices: 31322708--31322760 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31322698 GGCTCAAAAT
31322708 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31322734 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31322760 C
1 C
31322761 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31323103 original size:159 final size:158
Alignment explanation
Indices: 31322733--31323160 Score: 414
Period size: 159 Copynumber: 2.7 Consensus size: 158
31322723 AACTCCGTAT
* * * * *
31322733 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCTAACCTACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* ** * * * *
31322798 TCGGTCGAAGAGGCAGAATGCACAAGCCGGGATCGGCCCAGTCCCCCCCTACGTGCTATCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCAGGGATCGGCCCAGTCCCCCCCTACATGCTACCGATCC
** * *
31322863 TGCTACCGTAACCCTCAATTCAGTCTGA
131 TGCTACCACAACCCTCAAGTCAGGCTGA
* * * * * * * *
31322891 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCGACTCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * * * * *
31322955 GCCGACCGAAGAGGCATAATGCGCAAGCAGGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCGGT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCA-GGGATCGGCCCAGTCCCCCCCTACATGCTACCGAT
* * * *
31323020 CCTGCTGCCACAACCCTC-GGTCTGGCTGGG
129 CCTGCTACCACAACCCTCAAGTCAGGCT-GA
* * *
31323050 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGG-AGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCA-CTCA
* * *
31323114 GCC-AGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCC
65 GCCGA-CCGAAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCAGTCCC
31323161 TCCTGCGTGC
Statistics
Matches: 213, Mismatches: 50, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 79 0.37
159 130 0.61
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCAGGGATCGGCCCAGTCCCCCCCTACATGCTACCGATCC
TGCTACCACAACCCTCAAGTCAGGCTGA
Found at i:31323250 original size:26 final size:26
Alignment explanation
Indices: 31323209--31323313 Score: 151
Period size: 26 Copynumber: 4.0 Consensus size: 26
31323199 TTGATTCAAT
*
31323209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31323235 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
*
31323261 CCTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
31323287 CTTAGCCAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
31323313 C
1 C
31323314 CTAAGCCAAC
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
25 3 0.04
26 65 0.90
27 4 0.06
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31323289 original size:52 final size:52
Alignment explanation
Indices: 31323211--31323316 Score: 169
Period size: 52 Copynumber: 2.0 Consensus size: 52
31323201 GATTCAATCT
* *
31323211 TAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCTTAGCCAT-GGAATGAACTCTGTATGCC
*
31323263 TAGACTGGGAATGAACTCTGTATGCTTAGCCATGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCTTAGCCATGGAATGAACTCTGTATGCC
31323315 TA
1 TA
31323317 AGCCAACCCA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
52 49 0.98
53 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (52 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGCCATGGAATGAACTCTGTATGCC
Found at i:31323643 original size:159 final size:158
Alignment explanation
Indices: 31323293--31323753 Score: 468
Period size: 159 Copynumber: 2.9 Consensus size: 158
31323283 TATGCTTAGC
* *
31323293 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGTCG
1 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
* * * * ***
31323358 GAGAGGTTGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCCTTTGCGTACCGTCGATCCTGCTGC
66 AAGAGGAT-AATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGC
* * * *
31323422 CACAACCCTCGGTTCGGTCTGATCTTAGA
130 CACAACCCTCAGTCCGGTCTGAGCTTACA
* * * * * *
31323451 C-TAGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGTC
1 CAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
*
31323515 GAAGAGGCATAATGCGCAAGTCGGGGA-CTGGCCCGATCCCCCTCTGCGTGCTACCGAT-CTCGC
65 GAAGAGG-ATAATGCGCAAGTCGGGGATC-GGCCCGGTCCCCCTCTGCGTGCTACCGATCCT-GC
*
31323578 TGCCACAACCCTCAGTCCGG-CTGGGGCTTACA
127 TGCCACAACCCTCAGTCCGGTCT-GAGCTTACA
** ** * * *
31323610 CATGGAATGAACTCCCTACACCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCAGTC-
1 CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
* * * ** **
31323674 AGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTTCGTGCTGTCGATCCTGCAC
66 A-AGAGG-ATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTG
* *
31323738 CCGCAACCCTCGGTCC
129 CCACAACCCTCAGTCC
31323754 AGTCCGATCC
Statistics
Matches: 248, Mismatches: 45, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 117 0.47
159 127 0.51
160 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
CATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
AAGAGGATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
ACAACCCTCAGTCCGGTCTGAGCTTACA
Found at i:31323775 original size:553 final size:553
Alignment explanation
Indices: 31322710--31323817 Score: 1483
Period size: 553 Copynumber: 2.0 Consensus size: 553
31322700 CTCAAAATCT
* *
31322710 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCTAACCTAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAC
* *
31322775 GAAATGAGCGTACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCACAAGCCGGGATCGGCCCAGT
66 GAAACGAGCATACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCACAAGCCGGGATCGGCCCAGT
* * ** *
31322840 CCCCCCCTACGTGCTATCGATCCTGCTACCGTAACCCTCAATTCAGTCTGATCTTAGACTGGGAA
131 CCCCCCCTACGTACCATCGATCCTGCTACCACAACCCTCAATTCAGTCTGATCTTAGACTAGGAA
* * **
31322905 TGAACTCCGTATGCATAAGTCGACTCATGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGC
196 TGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGC
* *
31322970 ATAATGCGCAAGCAGGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCGGTCCTGCTGCCACAACC
261 ATAATGCGCAAGCAGGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCTGCCACAACC
* * * * ** *
31323035 CTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGG
326 CTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACACCTAAGCCAACCCACAAAACGGG
* *
31323100 CGTGCGGGAGCTCAGCCAGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCCT
391 CGTGCGGGAGCTCAGCCAGCCAGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCT
* **** ** * *
31323165 GCGTGCTGTCGATCTTGTTGTCGCAACCCTCGGTTTGATTCAATCTTAGACTGGGAATGAACTCC
456 GCGTGCTGTCGATCCTGCACCCGCAACCCTCGGTCAGATCCAATCCTAGACTGGGAATGAACTCC
*
31323230 GTATGCTTAGACTAGGGATGAACTCTGTATGCC
521 GTATGCTTAGACTAGGGATGAACTCCGTATGCC
* *
31323263 TAGACTGGGAATGAACTCTGTATGCTTAGCCATGGAATGAAC-TCTGTATGCCTAAGCCAACCCA
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCA
* * ** * * *
31323327 CGAAACGAGCATGCGGGCGCTCAGTCGGTCGGAGAGGTTGAATGCGCAAGTCGGGGATCGGCCCG
65 CGAAACGAGCATACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCACAAG-CCGGGATCGGCCCA
** * * * ** *
31323392 GT-CCCCTTTGCGTACCGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTAGG
129 GTCCCCCCCTACGTACCATCGATCCTGCTACCACAACCCTCAATTCAGTCTGATCTTAGACTAGG
* * ** **
31323456 AATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGGTCGAAGAG
194 AATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAG
* *
31323521 GCATAATGCGCAAGTC-GGGGA-CTGGCCC-GATCCCCCTCTGCGTGCTACCGAT-CTCGCTGCC
259 GCATAATGCGCAAG-CAGGGGATC-AGCCCAG-TCCCCCTCTGCATGCTACCGATCCT-GCTGCC
**
31323582 ACAACCCTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACACCTAAGCCAACCCATGA
320 ACAACCCTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACACCTAAGCCAACCCACAA
* * *
31323647 AACGGGCGTGCGGGCGCTCAGCCAGTCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTC
385 AACGGGCGTGCGGGAGCTCAGCCAGCCAGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTC
* * *
31323712 CCCCCTTCGTGCTGTCGATCCTGCACCCGCAACCCTCGGTCCAG-TCCGATCCTAGATTGGGAAT
450 CCCCCTGCGTGCTGTCGATCCTGCACCCGCAACCCTCGGT-CAGATCCAATCCTAGACTGGGAAT
* *
31323776 GAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
514 GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCC
31323816 TA
1 TA
31323818 AATCAACCCA
Statistics
Matches: 479, Mismatches: 69, Indels: 14
0.85 0.12 0.02
Matches are distributed among these distances:
552 6 0.01
553 457 0.95
554 16 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (553 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAC
GAAACGAGCATACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCACAAGCCGGGATCGGCCCAGT
CCCCCCCTACGTACCATCGATCCTGCTACCACAACCCTCAATTCAGTCTGATCTTAGACTAGGAA
TGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGC
ATAATGCGCAAGCAGGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCTGCCACAACC
CTCAGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTACACCTAAGCCAACCCACAAAACGGG
CGTGCGGGAGCTCAGCCAGCCAGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCT
GCGTGCTGTCGATCCTGCACCCGCAACCCTCGGTCAGATCCAATCCTAGACTGGGAATGAACTCC
GTATGCTTAGACTAGGGATGAACTCCGTATGCC
Found at i:31323803 original size:26 final size:26
Alignment explanation
Indices: 31323764--31323814 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31323754 AGTCCGATCC
* *
31323764 TAGATTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
31323790 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
31323815 CTAAATCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:31324848 original size:26 final size:26
Alignment explanation
Indices: 31324810--31324862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31324800 CCGGTCCGAT
31324810 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
31324836 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
31324862 C
1 C
31324863 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:31324944 original size:367 final size:355
Alignment explanation
Indices: 31324283--31324945 Score: 737
Period size: 367 Copynumber: 1.8 Consensus size: 355
31324273 ATTCAGCTGA
* * * * *
31324283 GGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTGCGGGTGCTTA
1 GGCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
** * *
31324348 GCCGACCGGAGAGGCAGAATACGCAAGCAAGGGATCAGCTCGGTCCCCCCTCTGTGTTATCGATA
66 GCCGACCGGAGAGGCAGAATACAAAAGCAAGGGATCAGCCCGGTCCCCCCTCTGTGTGATCGATA
* * *
31324413 CTGCTGCCACAACCCTTGATCCAGTTCGATCTTAGAGTGGGAATGAACTCTGTACGCTTAGACTG
131 CTGCTGCCACAACCCTAGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTG
* * * * * * * * *
31324478 GGGATAAACTCCATATGCCTTAGTCAACCCATGAAACAAGCGTGCGGGCATTCAGCCGGCCGGAG
196 GGAATAAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATGCAGACACTCAGCCGACCGAAG
* * * *
31324543 AGGCATAATGTGTAAGCCAGGGTTCGGCCCGATCCCTCTCTGCGGGTTGTCGATCCCGCTATCGT
261 AGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCTCTCTGCGGGTTGTCGATCCCGCTATCGT
31324608 TCCTGCTACCAGAACCCTCAGTCCGGCTAT
326 TCCTGCTACCAGAACCCTCAGTCCGGCTAT
* * *
31324638 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCATGCGGGCGCTCA
1 GGCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* *
31324703 GCC-AGCCGGAGAGGTAGAATGCAAAAGTC-AGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGA
66 GCCGA-CCGGAGAGGCAGAATACAAAAG-CAAGGGATCAGCCCGGTCCCCCCT-C-TG-TGT-GA
* * * *
31324766 TCCTGCTACTGGTCCTGTTGTCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTA
125 T-C-GATACT-G--C---TGCCACAACCCT-AGATCCAGTCCGATCTTAGACTGGGAATGAACT-
* * * * * *
31324830 C-GTATGCTTAGACAT-GGAATGAACTTCGTATGCCTAAG-CTAACCCACGAAACGAGTATGCAG
180 CTGTACGCTTAGAC-TGGGAATAAACTCCATATGCCTAAGTC-AACCCACGAAACAAGCATGCAG
*
31324892 ACACTCAGCCGATCGAAGAGGCAGAATGCGTAAGCC-GAGGATCGACCCGATCCC
243 ACACTCAGCCGACCGAAGAGGCAGAATGCGTAAGCCAG-GGATCGACCCGATCCC
31324946 CCCTGCGTGC
Statistics
Matches: 248, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
354 1 0.00
355 99 0.40
356 2 0.01
357 2 0.01
358 3 0.01
359 2 0.01
360 1 0.00
361 5 0.02
362 1 0.00
364 1 0.00
366 2 0.01
367 126 0.51
368 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (355 bp):
GGCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
GCCGACCGGAGAGGCAGAATACAAAAGCAAGGGATCAGCCCGGTCCCCCCTCTGTGTGATCGATA
CTGCTGCCACAACCCTAGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTG
GGAATAAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATGCAGACACTCAGCCGACCGAAG
AGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCTCTCTGCGGGTTGTCGATCCCGCTATCGT
TCCTGCTACCAGAACCCTCAGTCCGGCTAT
Found at i:31325286 original size:158 final size:157
Alignment explanation
Indices: 31324835--31325297 Score: 448
Period size: 158 Copynumber: 2.9 Consensus size: 157
31324825 AACTACGTAT
* * ** * * *
31324835 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCTAACCCACGAAACGAGTATGCAGACACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
31324900 CCGA-TCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATC
66 CCGACT-GGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
** **
31324964 CTATTGCCACAACCCTCGCTCTGGTCTGA
129 CTGCTGCCACAACCCTCGCTCCAGTCTGA
* * * *
31324993 TCTTAGAC-TGTGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * *
31325057 GTC-AGCCGGAGAGGCATAATGCGCAAGCCGGGGATTGGCCAAGTCCCCCCTGCGTGCCGCCGGT
65 GCCGA-CTGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
* * * *
31325121 CCCGCTGCCACATCCCTCGGTCCAG-CTGGG
128 CCTGCTGCCACAACCCTCGCTCCAGTCT-GA
* * * * *
31325151 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
31325216 CCGACTGGAGATGCAGAATGCGCAAGCCGGGAAACGGCCCGGTCCCCCCTACGTGCTGTCGATGC
66 CCGACTGGAGAGGCAGAATGCGCAAGCCGGG-ATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
*
31325281 TGCTGCCGCAACCCTCG
130 TGCTGCCACAACCCTCG
31325298 ACCCGATCCG
Statistics
Matches: 239, Mismatches: 58, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 8 0.03
158 227 0.95
159 4 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACTGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGCTCCAGTCTGA
Found at i:31325533 original size:183 final size:184
Alignment explanation
Indices: 31325151--31325703 Score: 622
Period size: 183 Copynumber: 3.0 Consensus size: 184
31325141 TCCAGCTGGG
* * * * *
31325151 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * *
31325215 ACC-GACTGGAGA--TGCAGAATGCGCAAGCCGGGAAACGGCCCGGTCCCCCCTACGTGCTGTCG
65 GCCGGAC-GGAGAGGTG-AGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCG
* * ** * * * **
31325277 ATGCTGCTGCCGCAACCCTCGACCCGATCCGATATTAGACTGGGAATGAACTTTGTAT
128 ATCCTACTG-CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
31325335 GTTTTGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* *
31325400 CCGGTCGGAGAGGTGA-AATGCGCAAG-CGGGGATCGGCCCAGTCCCCCCTGCGTGCTG-CTGGT
66 CCGGACGGAGAGGTGAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTC-GAT
* *
31325462 CCTACTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
130 CCTACTG-CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
31325518 GCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
31325583 CCGGCCAGAGAGGT-AGAATGCGCAAGCCGGGGATCAG-CCTGATCCCCCATGCGTGCTATCAAT
66 CCGGACGGAGAGGTGAGAATGCGCAAGCCGGGGATCGGCCCAG-TCCCCCCTGCGTGCTGTCGAT
*
31325646 CCTACTGCTGCAACCTTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTACTGC-GCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTAT
31325702 GC
1 GC
31325704 CTAAGTCAAC
Statistics
Matches: 315, Mismatches: 43, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
182 2 0.01
183 160 0.51
184 147 0.47
185 4 0.01
186 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (184 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGACGGAGAGGTGAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATC
CTACTGCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:31325934 original size:159 final size:157
Alignment explanation
Indices: 31325518--31326020 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 157
31325508 AACTCCATAT
* * * * *
31325518 GCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAG
** * *
31325583 CCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCTGATCCCCCATGCGTGCTATCAATCC
66 CC-GCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCATGCGTGCTATCAATCC
** * * *
31325648 TACTGCTGCAACCTTCGGTCCGGTTCGA
130 TACTGCCACAACCCTCGATCCGGATCGA
* * * *
31325676 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGTA-CTGA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGAGCTCA
* * * * * * *
31325740 GCCGATCGGAAAGGCATAATGCACAAGCTGAGGATC-GACCCGATCCCCCTCTGCGTG-T-TGCT
65 GCCGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCC-ATGCGTGCTAT-C-
** * * * *
31325802 GGTCCTGCTGCCACAACCCTCGATCTGGATGGG
125 AATCCTACTGCCACAACCCTCGATCCGGATCGA
* *
31325835 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGAGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCA
* * * * * * * *
31325899 GCCAGCTGGAGTGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTACATGCTGTCGATC
65 GCC-GCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCATGCGTGCTATCAATC
* * * *
31325964 CTACTACCACACCCCTCGATCTGG-TCCAA
129 CTACTGCCACAACCCTCGATCCGGAT-CGA
*
31325993 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
31326021 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 56, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 146 0.53
159 119 0.43
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCATGCGTGCTATCAATCCT
ACTGCCACAACCCTCGATCCGGATCGA
Found at i:31326030 original size:26 final size:26
Alignment explanation
Indices: 31325994--31326046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31325984 CTGGTCCAAT
31325994 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31326020 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31326046 C
1 C
31326047 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31326481 original size:159 final size:159
Alignment explanation
Indices: 31326170--31326484 Score: 465
Period size: 159 Copynumber: 2.0 Consensus size: 159
31326160 TCTCGCTGCT
* * **
31326170 GGTCCTGCTGCCACGACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * *
31326235 GCCAACCCATGAAATAAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGG
66 GCCAACCCATCAAATAAGCATGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGG
*
31326300 ATCGGCCTGGTCCCCCTCTGCGTGCTGTC
131 ATCGGCCCGGTCCCCCTCTGCGTGCTGTC
*
31326329 GGTCCCGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * *
31326394 GCCAACCCA-CAAA-AACGGGCATGCGGGCGCTTAGTCGGCCGAAGAGGCAAAATGCGCAAGCCG
66 GCCAACCCATCAAATAA---GCATGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCGCAAGCCG
31326457 GGGATCGGCCCGGTCCCCCT-TGCGTGCT
128 GGGATCGGCCCGGTCCCCCTCTGCGTGCT
31326485 ATTGATCCTG
Statistics
Matches: 140, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
157 2 0.01
158 3 0.02
159 77 0.55
160 58 0.41
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (159 bp):
GGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCATCAAATAAGCATGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGG
ATCGGCCCGGTCCCCCTCTGCGTGCTGTC
Found at i:31326526 original size:159 final size:159
Alignment explanation
Indices: 31326179--31326548 Score: 426
Period size: 159 Copynumber: 2.3 Consensus size: 159
31326169 TGGTCCTGCT
* ** * *
31326179 GCCACGACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * *
31326244 TGAAATAAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTG
66 TCAAATAAGCATGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCG
* * *
31326309 GTCCCCCTCTGCGTGCTGTCGGTCCCGCT
131 GTCCCCCTCTGCGTGCTATCGATCCCGCA
* * *
31326338 GCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * *
31326403 -CAAA-AACGGGCATGCGGGCGCTTAGTCGGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGC
66 TCAAATAA---GCATGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGC
* *
31326466 CCGGTCCCCCT-TGCGTGCTATTGATCCTGCA
128 CCGGTCCCCCTCTGCGTGCTATCGATCCCGCA
* * * * *
31326497 GCCGCAACCTTCGGTCC-AGTTCGATCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCCACAACCCTCGGTCCGA-CTCGAGCTTAGACAT-GGAATGAACTCCCTATGC
31326549 TTACACTGGG
Statistics
Matches: 181, Mismatches: 25, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
157 2 0.01
158 5 0.03
159 116 0.64
160 58 0.32
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.18
Consensus pattern (159 bp):
GCCACAACCCTCGGTCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
TCAAATAAGCATGCGGGCGCTCAGCCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCG
GTCCCCCTCTGCGTGCTATCGATCCCGCA
Found at i:31326558 original size:26 final size:26
Alignment explanation
Indices: 31326522--31326574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31326512 CCAGTTCGAT
*
31326522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
31326548 CTTACACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
31326574 C
1 C
31326575 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31326670 original size:528 final size:527
Alignment explanation
Indices: 31325662--31326671 Score: 1276
Period size: 528 Copynumber: 1.9 Consensus size: 527
31325652 GCTGCAACCT
* * * *
31325662 TCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
1 TCGGTCCGGTTCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGC
* * * * *
31325727 GTTCAGGTACTGAGCCGATCGGAAAGGCATAATGCACAAGCTGAGGATCGACCCGATCCCCCTCT
66 GTGCAGGCACTCAGCCGATCGGAAAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTCT
* * *
31325792 GCGTGTTGCTGGTCCTGCTGCCACAACCCTCGATCTGGATGGGGCTTAGACATGGAATGAACTCC
131 GCGTGCTGCTGGTCCCGCTGCCACAACCCTCGATCTCGATGGGGCTTAGACATGGAATGAACTCC
* * * * * * * *
31325857 GTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGAGCTCAGCCAGCTGGAGTGGCAGAATGCG
196 CTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGAGCTCAGCCAGCCGAAGAGGCAAAATGCG
* * * **
31325922 TAAGCCGGGGATCAGCCCGGTCCCCCCTACATGCTGTCGATCCTACTACCACACCCCTCGATCTG
261 CAAGCCGGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCTACTACCACAACCCTCGATCCA
*
31325987 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAG
326 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGGATGAACTCTGTATGCCTAAG
* ** * * *
31326052 TCAACCCATGAAACGAGCATGCGAGCACTCAGTCGGTCAGAGAGGTCGATCGAAGAGGCATAATA
391 TCAACCCATGAAACGAACATGCGAGCACTCAACCGATCAGAGAGGCCGATCGAAGAGGCAGAATA
* * *
31326117 TGTAAGTCGGGGCTCAGCTCGATCCCCTTTTACTTGCTGTCGATCTCGCTGCTGGTCCTGCTGCC
456 CGTAAGTCGGGGATCAGCCCGATCCCCTTTTACTTGCTGTCGATCTCGCTGCTGGTCCTGCTGCC
31326182 ACGACCC
521 ACGACCC
* * * *
31326189 TCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAAG
1 TCGGTCCGGTTCGAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAG
* * * * * * *
31326253 CGTGCGGGCGCTCAGCCGATC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCT
65 CGTGCAGGCACTCAGCCGATCGGAA-AGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCT
*
31326317 CTGCGTGCTG-TCGGTCCCGCTGCCACAACCCTCGGT-TCGACTGGGGCTTAGACATGGAATGAA
129 CTGCGTGCTGCT-GGTCCCGCTGCCACAACCCTCGATCTCGA-TGGGGCTTAGACATGGAATGAA
* * * * *
31326380 CTCCCTATGCCTAAGCCAACCCACAAAAACGGGCATGCGGGCGCTTAGTCGGCCGAAGAGGCAAA
192 CTCCCTATGCCTAAGCCAACCCAC-AAAACGAGCATGCGGGAGCTCAGCCAGCCGAAGAGGCAAA
* * * * * * * *
31326445 ATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTATTGATCCTGC-AGCCGCAACCTTC
256 ATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCTACTA-CCACAACCCTC
* * *
31326509 GGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGGATGAACTCTGTATG
320 GATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGGATGAACTCTGTATG
** * * * * *
31326574 CCTAAGTCAACCCATGAAACGAATGTGTGGGCACTCAACCGATCGGAGAGGCCGGTCGGAGAGGC
385 CCTAAGTCAACCCATGAAACGAACATGCGAGCACTCAACCGATCAGAGAGGCCGATCGAAGAGGC
*
31326639 AGAATGCGTAAGTCGGGGATC-GACCCGATCCCC
450 AGAATACGTAAGTCGGGGATCAG-CCCGATCCCC
31326672 CCTACGTGCT
Statistics
Matches: 405, Mismatches: 71, Indels: 13
0.83 0.15 0.03
Matches are distributed among these distances:
526 7 0.02
527 179 0.44
528 219 0.54
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (527 bp):
TCGGTCCGGTTCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGC
GTGCAGGCACTCAGCCGATCGGAAAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTCT
GCGTGCTGCTGGTCCCGCTGCCACAACCCTCGATCTCGATGGGGCTTAGACATGGAATGAACTCC
CTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGAGCTCAGCCAGCCGAAGAGGCAAAATGCG
CAAGCCGGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCTACTACCACAACCCTCGATCCA
GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGGATGAACTCTGTATGCCTAAG
TCAACCCATGAAACGAACATGCGAGCACTCAACCGATCAGAGAGGCCGATCGAAGAGGCAGAATA
CGTAAGTCGGGGATCAGCCCGATCCCCTTTTACTTGCTGTCGATCTCGCTGCTGGTCCTGCTGCC
ACGACCC
Found at i:31326702 original size:527 final size:518
Alignment explanation
Indices: 31325348--31326757 Score: 1420
Period size: 527 Copynumber: 2.7 Consensus size: 518
31325338 TTGACTGGGG
* * *
31325348 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
** * * * * * *
31325413 TGAAATGCGCAAG-CGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCTGGTCCTACTGTCGTAACC
66 CAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCTACAGCCGCAACC
* * *
31325477 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGT
131 CTCGGTCCGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGT
* * * * * *
31325542 AAGCCTAAGTCAACCCACGAAAC-AAGTGTGCGG------GCGCTC---A-GCCGGCCAGAGAGG
195 ATGCCTAAGTCAACCCATGAAACGAAGTGTG-GGCACTCACCGATCGAGAGGCCGGTCGGAGAGG
* * * * * *
31325596 TAGAATGCGCAAGCCGGGGATCAGCCTGATCCCCCATGCGTGCTATCAATCCTA--------CTG
259 CAGAATGCGTAAGTCGGGGATCAGCCCGATCCCCCATACGTGCTATCGATCCTACTGTGGTCCTG
* * * *
31325653 CTGCAACCTTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
324 CTGCAACCCTCGGTCCGGTTCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * *
31325718 GAAACGAGCGTTCAGGTACTGAGCCGATCGGAAAGGCATAATGCACAAGCTGAGGATCGACCCGA
389 GAAACAAGCGTGCAGGCACTCAGCCGATCGGAAAGGCAGAATGCACAAGCCGAGGATCGACCCGA
* * *
31325783 TCCCCCTCTGCGTGTTGCTGGTCCTGCTGCCACAACCCTCGATCTGGATGGGGCTTAGACATGGA
454 TCCCCCTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGATCTCGATGGGGCTTAGACATGGA
* * * * *
31325848 ATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGAGCTCAGCCAGCTGGAGTGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
* * * * * * * *
31325913 CAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTACATGCTGTCGATCCTACTA-CCACACC
66 CAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCTAC-AGCCGCAAC
* * * *
31325977 CCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTG
130 CCTCGGTC-CGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTG
* * * * * * *
31326042 TATGCCTAAGTCAACCCATGAAACG-AGCATGCGAGCACTCAGTCGGTCAGAGAGGTCGATCGAA
194 TATGCCTAAGTCAACCCATGAAACGAAG--TGTGGGCACTCA-CCGATC-GAGAGGCCGGTCGGA
* ** * * ** * * *
31326106 GAGGCATAATATGTAAGTCGGGGCTCAGCTCGATCCCCTTTTACTTGCTGTCGAT-CTCGCTGCT
255 GAGGCAGAATGCGTAAGTCGGGGATCAGCCCGATCCCC-CATACGTGCTATCGATCCT-ACTG-T
* *
31326170 GGTCCTGCTGCCACGACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTA
317 GGTCCTGCTG-CA--ACCCTCGGTCCGGTTCGAGCTTAGAC-TGGGAATGAACTCCCTATGCCTA
* * * * * *
31326234 AGCCAACCCATGAAATAAGCGTGCGGGCGCTCAGCCGATC-GAAGAGGCAGAATGCGCAAGCCGG
378 AGCCAACCCACGAAACAAGCGTGCAGGCACTCAGCCGATCGGAA-AGGCAGAATGCACAAGCCGA
* * * *
31326298 GGATCGGCCTGGTCCCCCTCTGCGTGCTG-TCGGTCCCGCTGCCACAACCCTCGGT-TCGACTGG
442 GGATCGACCCGATCCCCCTCTGCGTGCTGCT-GGTCCCGCTGCCACAACCCTCGATCTCGA-TGG
31326361 GGCTTAGACATGGA
505 GGCTTAGACATGGA
* * * * * * *
31326375 ATGAACTCCCTATGCCTAAGCCAACCCACAAAAACGGGCATGCGGGCGCTTAGTCGGCCGAAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCAC-GAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
* * *
31326440 GCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTATTGATCCTGCAGCCGCAAC
65 GCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCTACAGCCGCAAC
* *
31326505 CTTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGGATGAACTCTG
130 CCTCGGTCC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTG
31326570 TATGCCTAAGTCAACCCATGAAACGAATGTGTGGGCACTCAACCGATCGGAGAGGCCGGTCGGAG
194 TATGCCTAAGTCAACCCATGAAACGAA-GTGTGGGCACTC-ACCGATC-GAGAGGCCGGTCGGAG
* *
31326635 AGGCAGAATGCGTAAGTCGGGGATC-GACCCGATCCCCCCTACGTGCTACCGATCCTACTGTTGG
256 AGGCAGAATGCGTAAGTCGGGGATCAG-CCCGATCCCCCATACGTGCTATCGATCCTACTG-TGG
* * * * *
31326699 TCCTGCCGTTGTAACCCTCGGT-CTGATCTGATCTTAGACTGGGAATGAACTCCATATGC
319 TCCTG-C--TGCAACCCTCGGTCCGGTTC-GAGCTTAGACTGGGAATGAACTCCCTATGC
31326758 TTAGACATGG
Statistics
Matches: 722, Mismatches: 139, Indels: 71
0.77 0.15 0.08
Matches are distributed among these distances:
500 66 0.09
501 116 0.16
502 3 0.00
503 3 0.00
509 4 0.01
513 1 0.00
514 36 0.05
515 10 0.01
524 6 0.01
525 2 0.00
526 11 0.02
527 238 0.33
528 220 0.30
529 3 0.00
530 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (518 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
CAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCTACAGCCGCAACC
CTCGGTCCGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTA
TGCCTAAGTCAACCCATGAAACGAAGTGTGGGCACTCACCGATCGAGAGGCCGGTCGGAGAGGCA
GAATGCGTAAGTCGGGGATCAGCCCGATCCCCCATACGTGCTATCGATCCTACTGTGGTCCTGCT
GCAACCCTCGGTCCGGTTCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACAAGCGTGCAGGCACTCAGCCGATCGGAAAGGCAGAATGCACAAGCCGAGGATCGACCCGATC
CCCCTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGATCTCGATGGGGCTTAGACATGGA
Found at i:31326769 original size:26 final size:26
Alignment explanation
Indices: 31326731--31326783 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31326721 CTGATCTGAT
*
31326731 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
31326757 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
31326783 C
1 C
31326784 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:31326964 original size:195 final size:196
Alignment explanation
Indices: 31326629--31327081 Score: 556
Period size: 195 Copynumber: 2.3 Consensus size: 196
31326619 GAGAGGCCGG
* * *
31326629 TCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTACT
1 TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTACT
* * ***** *
31326694 GTTGGTCCTGCCGTTGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCT
66 GCTGGTCCTACCACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTACATATGCT
* * *
31326759 TAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAC-AAAAAGAGCGTGTGGGCGCTCAGCC
131 TAGACATGGAATAAACTCCGCATGCCTAAGCAAACCCACGAAAAA-AGCGTGCGGGCGCTCAGCC
31326823 GAC
195 -AC
* *
31326826 T-GGAGAGGAAGAATGCACAAGTCGGGG-TCGACCCGGTCCCCCCTACGTGCTATCGATCCTACT
1 TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTACT
* * * * * **
31326889 GCTGGTCCTACTACCACAACCCTCAGT-TCGGTCTGATCTTAGATTGGGAATGCACTATGTATGC
66 GCTGGTCCTACCACCACAACCCTCGGTCT-GATCTGATCTTAGACTGGGAATGAACTACATATGC
* *
31326953 TTAGACATGGAATGAACTCCGCATGCCTAAGCAAACCCACGAAATAAGCGTGCGGGCGCTCAGCC
130 TTAGACATGGAATAAACTCCGCATGCCTAAGCAAACCCACGAAAAAAGCGTGCGGGCGCTCAGCC
*
31327018 AG
195 AC
* * * * *
31327020 TCGGAGAGGCAGAATGCGCTAG-CTGGGGACCGGCTCGGTCCCCCCTGCGTGCTATCGATCCT
1 TCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCT
31327082 GCGACTGCAT
Statistics
Matches: 218, Mismatches: 33, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
194 4 0.02
195 157 0.72
196 56 0.26
197 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (196 bp):
TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTACT
GCTGGTCCTACCACCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTACATATGCT
TAGACATGGAATAAACTCCGCATGCCTAAGCAAACCCACGAAAAAAGCGTGCGGGCGCTCAGCCA
C
Found at i:31327920 original size:356 final size:354
Alignment explanation
Indices: 31327237--31327924 Score: 808
Period size: 356 Copynumber: 1.9 Consensus size: 354
31327227 GTGTTGTCGG
* * *
31327237 TCTTGCTGCCACAACCCTCGGTCCGACTGGGGATTAGACATGGAATGAACTCCCTATGTCTAAGC
1 TCTTGCTACCACAACCCTCGGTCCGACTGGGGATTAGACATGGAATGAACTCCCTATGCCTAACC
* * * * * *
31327302 CAACCCATGAAACGGGTGTGCAGGCGCTCAGCCAGCCGAAGAGGCAGAATGTGTAAACTAGGGAT
66 CAACCCATGAAACGAGCGTGCAGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAACCAGGGAT
** * * * * * *
31327367 CGGTCCGATCCCTCTTGCATGCTGTCGATCCTGCTGTCGTAACCCTTGGTCAGGTCTGATCTTAG
131 CGAACCGATCCCTCCTGCATGCTGTCAATCCTGCTGCCGCAACCCTCGGTCAGGTCCGATCTTAG
* * * * * *
31327432 ACTGGGAATAAACTTCATATGCTTGGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
196 ACTGGGAATAAACTCCATACGCTTAGACTGGGAATGAACACCGTATGCCTAAGCCAACCCATGAA
* * * * * * *
31327497 AAGAGCGTGCGGGCGCTCAGCAGGCCGGAGGGGCAAAATGCCCAAGCCGAGGATAAGCTCGATCC
261 AAGAGCGTGCGGGCACTCAGCAGGCCGAAGAGACAAAATGCCCAAGCCGAGGACAAGCCCAATCC
31327562 CCCTCTGCGGGCTGTTGATCCCGTTACCGA
326 CCC-CTGCGGGCTGTTGATCCCGTTACCGA
* ** * * *
31327592 TCTTGCTACCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAACC
1 TCTTGCTACCACAACCCTCGGTCCGACTGGGGATTAGACATGGAATGAACTCCCTATGCCTAACC
* * * *
31327657 CAACCCATGAAATGAGCGTGCAGGTGCTCAACC-GACCGAAGAGGCAGAATGCGCAAGCCGGGGA
66 CAACCCATGAAACGAGCGTGCAGGCGCTCAACCAG-CCGAAGAGGCAGAATGCGCAAACCAGGGA
* * *
31327721 TC-AACCTGGTCCCCTCCTGCATGTTGTCAATCCTGCTGCCGCAACCCTCGTTCCA-GTCCGATC
130 TCGAACC-GAT-CCCTCCTGCATGCTGTCAATCCTGCTGCCGCAACCCTCGGT-CAGGTCCGATC
* * *
31327784 TTAGACTGGGAATGAACTCCGTACGTTTAGACAT-GGAATGAACACCGTATGCCTAAGCCAACCC
192 TTAGACTGGGAATAAACTCCATACGCTTAGAC-TGGGAATGAACACCGTATGCCTAAGCCAACCC
* * * * * * **
31327848 ATGAAATGAGCGTGCGGGCACTCAGCCGGTCGAAGAGACAGAATGCGCAAGCCGGGGACCGGCCC
256 ATGAAAAGAGCGTGCGGGCACTCAGCAGGCCGAAGAGACAAAATGCCCAAGCCGAGGACAAGCCC
31327913 AATCCCCCCTGC
321 AATCCCCCCTGC
31327925 ATGCTATCAA
Statistics
Matches: 274, Mismatches: 54, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
354 3 0.01
355 116 0.42
356 152 0.55
357 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (354 bp):
TCTTGCTACCACAACCCTCGGTCCGACTGGGGATTAGACATGGAATGAACTCCCTATGCCTAACC
CAACCCATGAAACGAGCGTGCAGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAACCAGGGAT
CGAACCGATCCCTCCTGCATGCTGTCAATCCTGCTGCCGCAACCCTCGGTCAGGTCCGATCTTAG
ACTGGGAATAAACTCCATACGCTTAGACTGGGAATGAACACCGTATGCCTAAGCCAACCCATGAA
AAGAGCGTGCGGGCACTCAGCAGGCCGAAGAGACAAAATGCCCAAGCCGAGGACAAGCCCAATCC
CCCCTGCGGGCTGTTGATCCCGTTACCGA
Found at i:31328309 original size:158 final size:157
Alignment explanation
Indices: 31327810--31328309 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 157
31327800 CTCCGTACGT
* * *
31327810 TTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCC
* * * * * * *
31327875 GGTCGAAGAGACAGAATGCGCAAGCCGGGGACCGGCCCAATCCCCCCTGCATGCTATCAATACCA
66 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCTTGCATGCTACCGAT-CCA
* * *
31327940 CTACCGTAACCCTC-GATCCGGTGTGATC
129 CTGCCGCAACCCTCAGATCCGGTCTGATC
* * * *
31327968 TTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
** * * * * ** * *
31328032 CGACCAGAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCTTTTGCGTGCTACCGGTCC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCC--TTGCATGCTACCGAT-C
* * *
31328097 CGCTGCCACAACCCTCAGTTCC-G-CT-AGTGC
127 CACTGCCGCAACCCTCAGATCCGGTCTGA-T-C
* * * * * *
31328127 TTAGACATGGAATGAA-TCCCTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCC
* * * * * * *
31328191 GGTTGGAGAGGCAGAATGTGCAAGCCGGGGATCGGTCTGGTCTGCCTTGCATGCTGCCGATCCTA
66 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATC-CCCTTGCATGCTACCGATCC-A
31328256 CTGCCGCAACCCTCAG-TCCGGTCTGATC
129 CTGCCGCAACCCTCAGATCCGGTCTGATC
31328284 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
31328310 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
156 6 0.02
157 49 0.18
158 167 0.62
159 41 0.15
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTTGCATGCTACCGATCCACT
GCCGCAACCCTCAGATCCGGTCTGATC
Found at i:31328312 original size:26 final size:26
Alignment explanation
Indices: 31328283--31328335 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31328273 CCGGTCTGAT
31328283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31328309 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31328335 C
1 C
31328336 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31328676 original size:26 final size:26
Alignment explanation
Indices: 31328647--31328696 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
31328637 CCGATTCGAT
31328647 CTTAGAC-TGGGAATGAACTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
31328673 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
31328697 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:31329182 original size:26 final size:26
Alignment explanation
Indices: 31329146--31329201 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
31329136 CTGATCTTAT
31329146 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31329172 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31329198 CTTA
1 CTTA
31329202 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31329894 original size:159 final size:158
Alignment explanation
Indices: 31329538--31329941 Score: 452
Period size: 159 Copynumber: 2.6 Consensus size: 158
31329528 AACTCTGTAT
* *
31329538 GCTTAGACATGAAATGAACTCCGTATGCCTAAGGCAACCCATGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
* * * *
31329603 CCGACCGGAGAGGCAGAATGCATAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTTGATCT
66 CCGACCGAAAAGGCAGAATGCATAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * ** *
31329668 TGCTGCTGCAACCCTCGGTCTGATCTGA
131 CGCTACCACAACCCTCGGTCCGATCTGA
* * * * * ** *
31329696 TCTTAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
* * * * * * *
31329761 CTGGCCGAAAAGGCATAATGCGTAAGTCGAGGATCGGCCCGATCCCTCTCTGCGTGTTGTCGATC
66 CCGACCGAAAAGGCAGAATGCATAAGTCGAGGATCGACCCGATCCC-CCCTGCGTGCTGTCGATC
*
31329826 CCGCTACCACAACCCTCGGTCCGA-CTGGG
130 CCGCTACCACAACCCTCGGTCCGATCT-GA
* * * *
31329855 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-AGGGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACA-AGCGTGCGGGTGCTCA
* * * *
31329919 GCCGGCCGGAGAGGCAAAATGCA
65 GCCGACCGAAAAGGCAGAATGCA
31329942 CAAGCTGGGG
Statistics
Matches: 201, Mismatches: 42, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
158 97 0.48
159 104 0.52
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
CCGACCGAAAAGGCAGAATGCATAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCCGATCTGA
Found at i:31330169 original size:184 final size:184
Alignment explanation
Indices: 31329855--31330214 Score: 474
Period size: 184 Copynumber: 2.0 Consensus size: 184
31329845 TCCGACTGGG
* * * * *
31329855 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCACAG
** *
31329920 CCGGCCGGAGAGGCAAAATGCACAAGCTGGGGATAGGCCTGGGCCCCCTTGCGTGCTGCCGATCC
66 CCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATAGGCCCGGGCCCCCTTGCGTGCTGCCGATCC
*
31329985 TACTG-TCGCAACCCTC-GATCCGGTTCAATCTTAGACTGGGAATGAACTTCGTAT
131 TACTGCT-GCAACCCTCAG-TCCAGTTCAATCTTAGACTGGGAATGAACTTCGTAT
** *
31330039 GCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAG
1 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCACAG
* * * * * * *
31330104 CCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCC-TGCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATAGGCCCGGGCCC-CCTTGCGTGCTGCCGATC
* **
31330168 CTGCTGCTGCAACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAA
130 CTACTGCTGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAA
31330215 GTCTGTATGC
Statistics
Matches: 151, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
184 147 0.97
185 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCACAG
CCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATAGGCCCGGGCCCCCTTGCGTGCTGCCGATCC
TACTGCTGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTTCGTAT
Found at i:31330282 original size:501 final size:498
Alignment explanation
Indices: 31329172--31331166 Score: 1951
Period size: 501 Copynumber: 3.9 Consensus size: 498
31329162 ACTCCGTATG
* * * * * * *
31329172 CTTAGACTGGGGATGAACTCTGTATGCTTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
** ** * *
31329237 CGGCCAAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCC
66 CGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGAT-CCCCTCTGCGTG---T---T--
* * * * * * *
31329302 AGCTGCCGATCCTGTTACCACAACCTTTGGCCCGACTGGGGCTTAGACATGGAATGAACTTCGTA
122 -G-T--CGATCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * * *
31329367 TGCCTAAGCCAACCAATGAAATGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGTGCAA
183 TGCCTAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAA
* * * * * *
31329432 GCCGAAGATCGACCTAATCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACTATCGTAACC
248 GCTGAGGATCGGCCTGAT-CCCCCT---TGC-GT-G---CTGC--C-GATCCTACTGTCGTAACC
* *
31329497 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGAAATGAACTCCGT
301 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGAATGAACTCCGT
* * * * * **
31329562 ATGCCTAAGGCAACCCATGAAACAAGCGTGCGGGTGCTCAGCC-GACCGGAGAGGCAGAATGCAT
365 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCACAGCCAG-CCGGAGAGGCAGAATGCGC
* * * * *
31329626 AAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTTGATCTTGCTGCTGCAACCCTCGGTCTGA
429 AAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCAG-
*
31329691 TCTGAT
493 TTTGAT
* *
31329697 CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * * *
31329761 CTGGCCGAAAAGGCATAATGCGTAAGTCGAGGATCGGCCCGATCCCTCTCTGCGTGTTGTCGATC
65 CCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCC-CTCTGCGTGTTGTCGATC
31329826 CCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
31329891 ACCCATGAAAAGGGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGCTGGGGATAG
194 ACCCATGAAAAGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCG
** * * * *
31329956 GCCTGGGCCCCCTTGCGTGCTGCCGATCCTACTGTCGCAACCCTCGATCCGGTTCAATCTTAGAC
259 GCCTGATCCCCCTTGCGTGCTGCCGATCCTACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGAC
* * *
31330021 TGGGAATGAACT-TCGTATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACGAAA
324 TGGGAATGAACTCT-GTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
31330085 CGAGCGTGCGGGCGCACAGCCTGTCGGAGAGGCAGAATGCGCAAGCC-AGGGATCGGCCCGGTCC
387 CGAGCGTGCGGGCGCACAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCC
*
31330149 CTCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCAGTTTGAT
451 CCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGT-CAGTTTGAT
* * **
31330198 CTTAGACTGGGAATGAAGTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * * * * *
31330263 CGGTCGGAGAGGTATAATGCGTAAGCCGAGGA-CTGACTCGGTCCCCCTCTGCGTGCTGTCGGTC
66 CGGCCGGAGAGGCATAATGCGTAAGCCGAGGATC-GGCCCGAT-CCCCTCTGCGTGTTGTCGATC
* * ** *
31330327 CCGCTGCTACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCA
129 CCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * *
31330392 ACCCACGAAACA-GGCGTGCGGGTGCTAAGCTGGCTGGAGAGGTAGAATGCGTAAGCTGAGGATT
194 ACCCATGAAA-AGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATC
* * *
31330456 GGCCTGATCCCCCTTGCGTGCTACCGAACCTTCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGA
258 GGCCTGATCCCCCTTGCGTGCTGCCGATCCTACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGA
** *
31330521 CT-GGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
323 CTGGGAATGAACTCTGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* *
31330585 TGAGCGTGCGGGCGTTCAGCCAGCCGCAGAGGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGA
387 CGAGCGTGCGGGCG--CA--CAG-C-C--A-G-C---CGGAGAGGCAGAATGCGCAAGCCGAGGA
*
31330650 TCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTGTCGGTCCTGCTGTCGCAACCCTCAGTT
439 TCGACCCGATCCCCC-CTGCGTGCTGTCGAT--C-C--T--G--CTGC--T-GCAACCCTCAG-T
* * **
31330715 CGGTTGGGG
490 CAGTTTGAT
* * **
31330724 CTTAGACAT-GGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCT
1 CTTAGAC-TGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
* * * * *
31330787 GCCGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGTTG-CTGGT
64 GCCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGTTGTC-GAT
* * ** * *
31330851 CTCGCTGCCACAACCCTCGGTTTGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCC
128 CCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * * *
31330916 AACCCATGAAATGGGTGTGTGGGCACTCAGTCAGCCGGAGAGGCAGAATGCGTAAGCTGGGGATC
193 AACCCATGAAAAGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATC
* * * * * * *
31330981 GGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCATCGGTCCGATCTGATCTTAGA
258 GGCCTGATCCCCCTTGCGTGCTGCCGATCCTACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGA
* * *
31331046 CTAGGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTTAACCCACGAAA
323 CTGGGAATGAACTCTGTATGCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
31331111 CGAGCGTGCGGACGCTCAGCCAACCAGAGAGGAAGGATGCGCAAGCC-AGGGATCGA
387 CGAGCGTGCGGGCGCACAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGA
31331167 ACGGGTGGTA
Statistics
Matches: 1233, Mismatches: 189, Indels: 108
0.81 0.12 0.07
Matches are distributed among these distances:
499 1 0.00
500 69 0.06
501 454 0.37
502 11 0.01
504 7 0.01
505 1 0.00
506 1 0.00
507 1 0.00
508 2 0.00
509 4 0.00
512 7 0.01
513 179 0.15
514 16 0.01
515 1 0.00
516 3 0.00
517 1 0.00
518 1 0.00
519 2 0.00
520 1 0.00
521 2 0.00
522 4 0.00
523 4 0.00
524 6 0.00
525 282 0.23
526 170 0.14
527 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (498 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
CGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGTTGTCGATCCC
GCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAAAGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGC
CTGATCCCCCTTGCGTGCTGCCGATCCTACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCTGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCACAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCT
GCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCAGTTTGAT
Found at i:31330387 original size:159 final size:158
Alignment explanation
Indices: 31330039--31330413 Score: 434
Period size: 158 Copynumber: 2.4 Consensus size: 158
31330029 AACTTCGTAT
* *
31330039 GCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACACAG
* * *
31330104 CCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
31330169 TGCTGCTGCAACCCTCAGTCCAGTTTGA
131 CGCTGCTACAACCCTCAGTCCAGTTGGA
* * * * * ***
31330197 TCTTAGAC-TGGGAATGAAGTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACACA
* * * *
31330261 GCCGGTCGGAGAGGTATAATGCGTAAGCC-GAGGA-CTGACTCGGTCCCCCTCTGCGTGCTGTCG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAG-GGATC-GACCCGGTCCCCC-CTGCGTGCTGTCG
* * * *
31330324 GTCCCGCTGCTACAACCCTCGGTCCGGTTGGG
127 ATCCCGCTGCTACAACCCTCAGTCCAGTTGGA
* **
31330356 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGG
31330414 TGCTAAGCTG
Statistics
Matches: 179, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 91 0.51
159 84 0.47
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACACAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCTACAACCCTCAGTCCAGTTGGA
Found at i:31330431 original size:159 final size:158
Alignment explanation
Indices: 31330039--31330477 Score: 451
Period size: 159 Copynumber: 2.8 Consensus size: 158
31330029 AACTTCGTAT
*
31330039 GCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-ACA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTA-A
* * * * *
31330103 GCCTGTC-GGAGAGGCAGAATGCGCAAGCC-AGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGA
65 G-CTGGCTGGAGAGGTAGAATGCGTAAGCCGA-GGATCGACCCGGTCCCCCCTGCGTGCTGTCGA
* * *
31330166 TCCTGCTGCTGCAACCCTCAGTCCAGTTTGA
128 TCCCGCTGCTACAACCCTCAGTCCAGTTGGA
* * * * * ** *
31330197 TCTTAGAC-TGGGAATGAAGTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
* * *
31330261 GCCGG-TCGGAGAGGTATAATGCGTAAGCCGAGGA-CTGACTCGGTCCCCCTCTGCGTGCTGTCG
65 GCTGGCT-GGAGAGGTAGAATGCGTAAGCCGAGGATC-GACCCGGTCCCCC-CTGCGTGCTGTCG
* * * *
31330324 GTCCCGCTGCTACAACCCTCGGTCCGGTTGGG
127 ATCCCGCTGCTACAACCCTCAGTCCAGTTGGA
* ** *
31330356 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGTGCTAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTAA
* * * * * *
31330420 GCTGGCTGGAGAGGTAGAATGCGTAAGCTGAGGATTGGCCTGATCCCCCTTGCGTGCT
65 GCTGGCTGGAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCT
31330478 ACCGAACCTT
Statistics
Matches: 225, Mismatches: 45, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.02
158 94 0.42
159 125 0.56
160 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CTGGCTGGAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCTACAACCCTCAGTCCAGTTGGA
Found at i:31330559 original size:26 final size:25
Alignment explanation
Indices: 31330515--31330566 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
31330505 CCGGTCCGAT
31330515 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
* *
31330540 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCATATG
31330566 C
1 C
31330567 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:31331029 original size:158 final size:158
Alignment explanation
Indices: 31330685--31331029 Score: 433
Period size: 158 Copynumber: 2.2 Consensus size: 158
31330675 GTCGATCCCA
* * * * *
31330685 CTGTCGGTCCTGCTGTCGCAACCCTCAGTTCGGTTGGGGCTTAGACATGGAATGAACTTCGTATG
1 CTGTCGGTCCTGCTGTCGCAACCCTCGGTTCGGCTGGGGCTTAGACATAGAATGAACTCCCTATG
* * *
31330750 CCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCTGCCGGCCGGAGAGGCAGAATGCATAAGC
66 CCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAATGCATAAGC
31330815 CGAGGATCAGCCCGATCCCCCCTGCGTG
131 CGAGGATCAGCCCGATCCCCCCTGCGTG
* * * *
31330843 TTG-CTGGT-CTCGCTGCCACAACCCTCGGTTTGGCTGGGGCTTAGACATAGAATGAACTCCCTA
1 CTGTC-GGTCCT-GCTGTCGCAACCCTCGGTTCGGCTGGGGCTTAGACATAGAATGAACTCCCTA
* * * ** * *
31330906 TGCCTAAGCCAACCCATGAAATGGGTGTGTGGGCACTCAGTCAGCCGGAGAGGCAGAATGCGTAA
64 TGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAATGCATAA
* * *
31330971 GCTGGGGATCGGCCCGATCCCCCCTGCGTG
129 GCCGAGGATCAGCCCGATCCCCCCTGCGTG
* * *
31331001 CTGTCGATCCTGCTGTCGTAACCATCGGT
1 CTGTCGGTCCTGCTGTCGCAACCCTCGGT
31331030 CCGATCTGAT
Statistics
Matches: 155, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 149 0.96
159 3 0.02
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.21
Consensus pattern (158 bp):
CTGTCGGTCCTGCTGTCGCAACCCTCGGTTCGGCTGGGGCTTAGACATAGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAATGCATAAGC
CGAGGATCAGCCCGATCCCCCCTGCGTG
Found at i:31331066 original size:158 final size:158
Alignment explanation
Indices: 31330723--31331066 Score: 358
Period size: 158 Copynumber: 2.2 Consensus size: 158
31330713 TTCGGTTGGG
*
31330723 GCTTAGAC-ATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTC
1 GCTTAGACTA-GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTC
* * * *
31330786 TGCCGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGTTGCTGGT
64 AGCCAGCCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCTGAT
* ** *
31330851 CTCGCTGCCACAACCCTCGGTTTGGCTGGG
129 CTCGCTGCCACAACCATCGGTCCGGCTGGA
** * * * **
31330881 GCTTAGACATA-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGTGGGCACTCA
1 GCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCA
* * * * *
31330945 GTCAGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTG-TCGAT
65 GCCAGCCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCT-GAT
* ** *
31331009 C-CTGCTGTCGTAACCATCGGTCCGATCT-GA
129 CTC-GCTGCCACAACCATCGGTCCG-GCTGGA
*
31331039 TCTTAGACTAGGAATGAACTCTGTATGC
1 GCTTAGACTAGGAATGAACTCTGTATGC
31331067 TTAGACTGAG
Statistics
Matches: 151, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.03
158 144 0.95
159 2 0.01
160 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAG
CCAGCCGGAGAGGCAGAATGCATAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCTGATCT
CGCTGCCACAACCATCGGTCCGGCTGGA
Found at i:31331069 original size:26 final size:26
Alignment explanation
Indices: 31331040--31331092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31331030 CCGATCTGAT
*
31331040 CTTAGACT-AGGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
31331066 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
31331092 C
1 C
31331093 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:31332210 original size:26 final size:26
Alignment explanation
Indices: 31332181--31332233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31332171 CCAATCCGAT
31332181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31332207 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31332233 C
1 C
31332234 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31332878 original size:158 final size:157
Alignment explanation
Indices: 31332377--31332878 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 157
31332367 CCGACTGGGG
* * *
31332377 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCGGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
31332442 CGACTGGAGAGGCAGAATGCGTAAGCCGGGGATCAGTCTGGTCCCCCCTGCGTGCTGCAGATCCT
65 CGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * * * * **
31332507 GCTACCGTAACCTTTGATCCCATCTAAT
130 GCTACCGCAACCCTCGGTCCGATCCGAT
** * * * * *
31332535 CTTAGAC-TGGCAATGAACTCCGTATGCAAAAGTCAACCAATGAAACGAACGTTCGGGCTCTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACC-ATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
31332599 CCGGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCGG-CCCACCTCTACGTACTGTCGAT
64 TCGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCC-CC-CTGCGTGCTGCCGAT
* * * * ** **
31332663 CCCGCTATCACAACCCTCAGTCCGATTGGCG
127 CCTGCTACCGCAACCCTCGGTCCGATCCGAT
* * *
31332694 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCATGAAACGGGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CATGAAACGAGCGTGCGGGCGCTCAGT
* * *
31332759 CGGCTGGAGGGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
65 CGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * *
31332824 ACTGA-CGCAACCCTCGGTCTGGTCCGAT
130 GCT-ACCGCAACCCTCGGTCCGATCCGAT
31332852 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
31332879 TTAGACTAGG
Statistics
Matches: 264, Mismatches: 71, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 9 0.03
158 136 0.52
159 112 0.42
160 7 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCATGAAACGAGCGTGCGGGCGCTCAGTC
GGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTG
CTACCGCAACCCTCGGTCCGATCCGAT
Found at i:31332881 original size:26 final size:26
Alignment explanation
Indices: 31332852--31332904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31332842 CTGGTCCGAT
31332852 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
31332878 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31332904 C
1 C
31332905 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31333183 original size:685 final size:670
Alignment explanation
Indices: 31331863--31333329 Score: 1692
Period size: 685 Copynumber: 2.2 Consensus size: 670
31331853 GTCTGGTTCG
*
31331863 ATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAACGTGT-GGGCACTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAACGT-TCGGGCACTG
* * * * * * * *
31331927 AGCCAACCGAAGAAGCATAATGCGCAAG-CTGAGGATAGGCCCGGTCCCCCTCTGCGTGCTACCG
65 AGCCGACCGAAGAGGCATAATGCGTAAGTC-GGGGATCGGCTCGGTCCCCCTCTACGTACTACCG
* * * * ** * * *
31331991 GTCCTGCTGCCACAACCTTTGGTCTAGCTGGGGCTTCGACATAGAATGAACTCCCTATGCCTAAG
129 ATCCCGCTACCACAACCCTCAGTCGAGCTGGCGCTTAGACATAGAATGAACTCCCTATGCCTAAG
* *
31332056 CCAACCCACGAAACAAGCATGCAGGTGCTCAACCGATTGGAGAGGCAGAATGCGCAAGCCGGGGA
194 CCAACCCACGAAACAAGCATGCAGGCGCTCAACCGACTGGAGAGGCAGAATGCGCAAGCCGGGGA
* * * * * * *
31332121 TCGGCCTGATCCCCTTGGGTGCCGCTGATCCTGCTGCTGTAACCCTTGGTCCAATCCGATCTTAG
259 TCGGCCCGATCCCCCTGCGTGCCGCCGATCCTACTGCTGCAACCCTCGGTCCAATCCGATCTTAG
* * *
31332186 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAA
324 ACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * ** **
31332251 ACAAGTGAGCGGGTGCTCAACTAGCCGGAGAGGCATAATGCGTAAGCCAGGGATCAGCCCGGTCC
389 ACAAGTGAGCGAGTGCTCAACCAGCCGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCAATCC
*
31332316 CCTCTGCGTGCTGCCGATCCCACTGCTGGTCCTACTGCCACAACCCTCAGTCCGACTGGGGCTTA
454 CCTCTGCGTACTGCCGATCCCACTGCTGGTCCTACTGCCACAACCCTCAGTCCGACTGGGGCTTA
* * * * *
31332381 GACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCGGTCGAC
519 GACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACAAGCGCGCGAGCACTCGCTCGAC
* * * * * * *
31332446 TGGAGAGGCAGAATGCGTAAGCCGGGGATCAGTCTGGTCCCCCCTGCGTGCTG-CAGATCCTGCT
584 CGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCATGCGTGCTGTC-GATCCTACT
** * *
31332510 ACCGTAACCTTTGATCCCATCTA
648 ACCACAACCCTCGATCCCATCTA
* * * * *
31332533 ATCTTAGACTGGCAATGAACTCCGTATGCAAAAGTCAACCAATGAAACGAACGTTCGGGCTCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAACGTTCGGGCACTGA
* **
31332598 GCCGGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCGG-CCCACCTCTACGTACTGTCGA
66 GCCGACCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCGGTCCC-CCTCTACGTACTACCGA
* * *
31332662 TCCCGCTATCACAACCCTCAGTCCGA-TTGGCGCTTAGACATGGAATGAACTCCCTATGCCTAAG
130 TCCCGCTACCACAACCCTCAGT-CGAGCTGGCGCTTAGACATAGAATGAACTCCCTATGCCTAAG
* * ** ** * ** * * *
31332726 CCAACGCATGAAACGGGTGTGCGGGCGCTCAGTCGGCTGGAGGGGTAGAATGCGCAAGCCGGGGA
194 CCAACCCACGAAACAAGCATGCAGGCGCTCAACCGACTGGAGAGGCAGAATGCGCAAGCCGGGGA
* * ***
31332791 TCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTACTGAC-GCAACCCTCGGTCTGGTCCGATCTT
259 TCGGCCCGAT-CCCCCTGCGTGCCGCCGATCCTACTG-CTGCAACCCTCGGTCCAATCCGATCTT
31332855 AGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATG
322 AGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATG
* * * * * *
31332920 AAACGAGCGTGTGAGCGCTCAGTCGGTCGGAGAGGCCGGCTGGAGAGGCATAATGCACAAGTCGG
387 AAAC-A---AGTGAGCG---AGT-GCTC--A-A--CCAGCCGGAGAGGCATAATGCACAAGCCAG
* * * *
31332985 GGATCAGCCCAATCCCTTTCTGCGTACTGTCGATCCCGCTGCTGGTCCTGCTGCCACAACCCTC-
439 GGATCAGCCCAATCCC-CTCTGCGTACTGCCGATCCCACTGCTGGTCCTACTGCCACAACCCTCA
* * *
31333049 GATCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAATCAAGCGC
503 G-TCCGACTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACAAGCGC
* *
31333114 GCGAGCACTCAGCT-GACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCATTC
567 GCGAGCACTC-GCTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCATGC
* * ** *
31333178 GTGCTGTCGATCCTACTGCCACAACCCTCGGTCCGGTCTG
631 GTGCTGTCGATCCTACTACCACAACCCTCGATCCCATCTA
* * * * *
31333218 ATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAACGTTCGGGCACTGA
* *
31333283 G-AGACCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCGATCCCC
66 GCCGACCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCGGTCCCC
31333330 TTTTGCGTGC
Statistics
Matches: 660, Mismatches: 113, Indels: 34
0.82 0.14 0.04
Matches are distributed among these distances:
669 4 0.01
670 212 0.32
671 110 0.17
672 2 0.00
675 7 0.01
678 2 0.00
679 3 0.00
681 1 0.00
682 1 0.00
684 77 0.12
685 238 0.36
686 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (670 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAACGTTCGGGCACTGA
GCCGACCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCTCTACGTACTACCGAT
CCCGCTACCACAACCCTCAGTCGAGCTGGCGCTTAGACATAGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACAAGCATGCAGGCGCTCAACCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATC
GGCCCGATCCCCCTGCGTGCCGCCGATCCTACTGCTGCAACCCTCGGTCCAATCCGATCTTAGAC
TAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
AAGTGAGCGAGTGCTCAACCAGCCGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCAATCCCC
TCTGCGTACTGCCGATCCCACTGCTGGTCCTACTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
CATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACAAGCGCGCGAGCACTCGCTCGACCG
GAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCATGCGTGCTGTCGATCCTACTACC
ACAACCCTCGATCCCATCTA
Found at i:31333382 original size:158 final size:158
Alignment explanation
Indices: 31333035--31333387 Score: 367
Period size: 158 Copynumber: 2.2 Consensus size: 158
31333025 GCTGGTCCTG
* *
31333035 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCATAAGCCAACC
* * * *
31333100 CACGAATCAAGCGCGCGAGCACTCAGCTGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCC
66 CACGAATCAAGCGCACGAGCACTCAGCAGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCC
*
31333165 CGATCCCCCATTCGTGCTGTCGATCCTA
131 CGATCCCCCATTCGTGCTGTCGATCCCA
* ** * *
31333193 CTGCCACAACCCTCGGTCCGGTCT-GATCTTAGA-TTGGGAATGAAC-TCTGTATGCATAAGTCA
1 CTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTTC-GTATGCATAAGCCA
* * * * * * * * *
31333255 ACCCATGAAAT-GAGCGTACGGGCGCTGAG-AGACCGAAGAGGCATAATGCGTAAGTCGGGGATC
63 ACCCACG-AATCAAGCGCACGAGCACTCAGCAGACCGAAGAGGCAGAATGCGCAAGCCGGGGATC
* * ** *
31333318 GGCTCGATCCCCTTTTGCGTGCTG-CAGGTCCCA
127 AGCCCGATCCCCCATT-CGTGCTGTC-GATCCCA
*
31333351 CTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATG
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
31333388 ATCCCCCTTT
Statistics
Matches: 156, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
157 47 0.30
158 102 0.65
159 7 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCATAAGCCAACC
CACGAATCAAGCGCACGAGCACTCAGCAGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCC
CGATCCCCCATTCGTGCTGTCGATCCCA
Found at i:31333424 original size:64 final size:64
Alignment explanation
Indices: 31333323--31333451 Score: 222
Period size: 64 Copynumber: 2.0 Consensus size: 64
31333313 GGATCGGCTC
* *
31333323 GATCCCCTTTTGCGTGCTGCAGGTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACAT
1 GATCCCCCTTTGCGTGCTGCAGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
* *
31333387 GATCCCCCTTTGCGTGCTGTAGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
1 GATCCCCCTTTGCGTGCTGCAGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
31333451 G
1 G
31333452 GAATGAACTC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.15, C:0.35, G:0.26, T:0.24
Consensus pattern (64 bp):
GATCCCCCTTTGCGTGCTGCAGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
Found at i:31333641 original size:26 final size:26
Alignment explanation
Indices: 31333601--31333651 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31333591 TGGTCTGATC
31333601 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
* *
31333627 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
31333652 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:31334728 original size:26 final size:26
Alignment explanation
Indices: 31334690--31334739 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
31334680 GGCTCAAAAT
31334690 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
31334716 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
31334740 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:31335149 original size:160 final size:159
Alignment explanation
Indices: 31334715--31335149 Score: 432
Period size: 160 Copynumber: 2.7 Consensus size: 159
31334705 AACTCCGTAC
* * * * *
31334715 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
* * * * * * * * *
31334780 CCAGTCGGAGAGGTAGAATGCGCAAGTCAGAGACCGGCCCGGTCCCCTC-CTGCAATGCTGTCGA
66 CCGGCCGGAGAGG-AAAATGCGCAAGCCGGGGATCGGCCC-GTCCCCCCTCTGCAATGCTGTAGA
*
31334844 TCCTACTACCACAACCCTCAGTCCGGTCTGA
129 TCCCACTACCACAACCCTCAGTCCGGTCTGA
* * * * * * * *
31334875 TCTTAGAC-TGGTAATGAACTCCATAAGCATAAGTCAACCCATGAAATGAGAT-TGCGGGCACTG
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCATGAAACG-GGTGTGCGGGCGCTC
* * ** * *
31334938 AGCTGGCCGAAGAGGAATAATATGCAAGCCGGGGATCGGCCCGACCCCCCCTCTGC-GTGCTGCT
64 AGCCGGCCGGAGAGGAA-AATGCGCAAGCCGGGGATCGGCCCG-TCCCCCCTCTGCAATGCTG-T
* *
31335002 AG-TCCCACTGCCACAACCCTCAGTCCGG-CTGGG
126 AGATCCCACTACCACAACCCTCAGTCCGGTCT-GA
*
31335035 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
**
31335100 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTAGCCCAGTCCCCCCT
66 CCGGCCGGAGAGG-AAAATGCGCAAGCCGGGGATCGGCCC-GTCCCCCCT
31335150 GCGTGCGATC
Statistics
Matches: 217, Mismatches: 47, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
159 9 0.04
160 196 0.90
161 12 0.06
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
CCGGCCGGAGAGGAAAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTCTGCAATGCTGTAGATC
CCACTACCACAACCCTCAGTCCGGTCTGA
Found at i:31335230 original size:26 final size:26
Alignment explanation
Indices: 31335194--31335246 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31335184 CCAATTCGAT
*
31335194 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31335220 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31335246 C
1 C
31335247 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31336148 original size:26 final size:26
Alignment explanation
Indices: 31336110--31336159 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
31336100 GGCTCAAAAT
31336110 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
31336136 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
31336160 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:31336509 original size:159 final size:158
Alignment explanation
Indices: 31336135--31336687 Score: 447
Period size: 159 Copynumber: 3.5 Consensus size: 158
31336125 AACTCCGTAC
* * *
31336135 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * ** * *
31336200 CCAGTCGGAGAGGTAGAATGCGCAAGTCAGAGACCGGCCCGGTCCCCTCCTACATGTTGTCGATC
66 CCGGTCGGAGAGG-AAAATGCGCAAGCCGGAGACCGGCCCGCCCCCCTCCTACATGCTGTAGATC
* *
31336265 CTACTACCACAACCCTCGGTCCGGTCTGA
130 CCACTACCACAACCCTCAGTCCGGTCTGA
* * * * * ** * *
31336294 TCTTAGAC-TGGTAATGAACTCCGTAAGCATAAGTCAACCCACGAAATGAGATTGCGGGCACTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
31336358 GCTGGCCGAAGAGGAATAATACGCAAGCCGGGGATCGGCCCGACCCCCCT-CTACGTGCTGCTAG
65 GCCGGTCGGAGAGGAA-AATGCGCAAGCCGGAGACCGGCCCG-CCCCCCTCCTACATGCTG-TAG
* *
31336422 -TCCCACTGCCACAACCCTCAGTCCGG-CTGGG
127 ATCCCACTACCACAACCCTCAGTCCGGTCT-GA
* *
31336453 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
*** ** * * **
31336518 CCGGTCGGAGAGGGAAAATGCGCAAGCCGGAGATTAGCCCGGTCCCC-CCTGCGTGC-GATCCAT
66 CCGGTCGGAGA-GGAAAATGCGCAAGCCGGAGACCGGCCCGCCCCCCTCCTACATGCTG-TAGAT
*** * * * * * **
31336581 CTTGCTATCGCAACTCTCGGTCCGATCCAA
129 CCCACTACCACAACCCTCAGTCCGGTCTGA
* * * * *
31336611 TCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGCCAACCCATGGAACGAGCGT-CGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
*
31336674 GCCGATCGGAGAGG
65 GCCGGTCGGAGAGG
31336688 CCGATCGAAG
Statistics
Matches: 308, Mismatches: 75, Indels: 25
0.75 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 24 0.08
158 78 0.25
159 190 0.62
160 14 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGAAAATGCGCAAGCCGGAGACCGGCCCGCCCCCCTCCTACATGCTGTAGATCC
CACTACCACAACCCTCAGTCCGGTCTGA
Found at i:31339161 original size:26 final size:26
Alignment explanation
Indices: 31339132--31339184 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31339122 CCGGTCTGAT
*
31339132 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31339158 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31339184 C
1 C
31339185 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31341226 original size:26 final size:26
Alignment explanation
Indices: 31341185--31341236 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31341175 CCGGTCTGAT
31341185 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31341211 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
31341237 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31341589 original size:26 final size:26
Alignment explanation
Indices: 31341551--31341603 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31341541 TCCGGTCGAT
31341551 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31341577 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31341603 C
1 C
31341604 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31342098 original size:172 final size:171
Alignment explanation
Indices: 31341805--31342118 Score: 432
Period size: 172 Copynumber: 1.8 Consensus size: 171
31341795 CTGAGCTAGT
* * * *
31341805 CGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGCATGATGTCGGTCCCGCT
1 CGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCCCTCTGCATGATATCGATCCCGCT
* * * * *
31341870 GCACAACCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAT
66 GCACAACCCCCGATCCTACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAC
*
31341935 GAAACGGGCGTGTGGGCACTCTGCCGGCCAGAGATGCCGAA
131 GAAACGAGCGTGTGGGCACTCTGCCGGCCAGAGATGCCGAA
* * * * * * *
31341976 CGGAGAGGTATAATGTGCAAGCTGGGGATCAG-CTCGATCGCCCTCTGCGTGCTATCGATCCCGC
1 CGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCT-GATCCCCCTCTGCATGATATCGATCCCGC
* *
31342040 TGCCACAACCCCCGATCCTACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
65 TG-CACAACCCCCGATCCTACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCC
31342105 ACGAAACGAGCGTG
129 ACGAAACGAGCGTG
31342119 CGGGTGCTCA
Statistics
Matches: 122, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
170 2 0.02
171 52 0.43
172 68 0.56
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (171 bp):
CGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCCCTCTGCATGATATCGATCCCGCT
GCACAACCCCCGATCCTACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAC
GAAACGAGCGTGTGGGCACTCTGCCGGCCAGAGATGCCGAA
Found at i:31342761 original size:157 final size:155
Alignment explanation
Indices: 31342263--31342761 Score: 468
Period size: 159 Copynumber: 3.2 Consensus size: 155
31342253 ACTCCGTATG
*
31342263 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGG-GCTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
31342327 CGACCGGAGAGGTAGAATGTGCAAGCTGGGGACCGACCCAGT-CCCCCTGCGTGCTGTCAATCTT
65 CGACCGGAGAGGTAGAATGCGCAAGCTGGGGTCGGA-CGA-TCCCCCCTGTGTGCTCTCAATCCT
* * * *
31342391 GCTACCGCAACCCTCAGTTCGATCCGAT
128 GCTGCCACAACCCTCAGTTCGGTCTGAT
* * * * * *
31342419 CTTAGACTGGGAATGAACTGCGTATGCCTTAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
31342484 CGACCGGAGGGGTATAACGCGCAAGCTGGGGATCGGCACGA-CCCCCCTCTACATGCTAC-CGAT
65 CGACCGGAGAGGTAGAATGCGCAAGCTGGGG-TCGG-ACGATCCCCCCTGT--GTGCT-CTCAAT
** * * **
31342547 CCCACTGCCACAACCCTCAG-TCCGACTGGGG
125 CCTGCTGCCACAACCCTCAGTTCGGTCT-GAT
* * * * *
31342578 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAG-ACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
31342643 CGACCGAAGAGGCAGAATGCGTAAGCCGGGGTCGGATCGATCCCCCCTGTGTGCTCTCAATCCTG
65 CGACCGGAGAGGTAGAATGCGCAAGCTGGGGTCGGA-CGATCCCCCCTGTGTGCTCTCAATCCTG
* *
31342708 CTGCCACCACCCTCGGTTCGGTCTGAT
129 CTGCCACAACCCTCAGTTCGGTCTGAT
*
31342735 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
31342762 TTAGATTGGG
Statistics
Matches: 266, Mismatches: 62, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 52 0.20
157 85 0.32
158 19 0.07
159 107 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
GACCGGAGAGGTAGAATGCGCAAGCTGGGGTCGGACGATCCCCCCTGTGTGCTCTCAATCCTGCT
GCCACAACCCTCAGTTCGGTCTGAT
Found at i:31342764 original size:26 final size:26
Alignment explanation
Indices: 31342735--31342787 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31342725 TCGGTCTGAT
*
31342735 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31342761 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31342787 C
1 C
31342788 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31343694 original size:26 final size:26
Alignment explanation
Indices: 31343665--31343717 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31343655 TCGATCTAAT
31343665 CTTAGAC-TGGGAATGAACT-TCGTATG
1 CTTAGACAT-GGAATGAACTCT-GTATG
31343691 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
31343717 C
1 C
31343718 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:31343993 original size:159 final size:158
Alignment explanation
Indices: 31343688--31344139 Score: 466
Period size: 159 Copynumber: 2.8 Consensus size: 158
31343678 TGAACTTCGT
* * * *
31343688 ATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCGTTT
1 ATGCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-CT
* * * *
31343753 CAGCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATTCCCCCT-TGCATGCTGTC
65 CAGCCGCT-GAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCATGCTGCC
* * *
31343817 GATCCTACTACCGTAACCCTCAATCTGATCCG
128 GATCCTACTACCCTAACCCTCAATATG-GCCG
* * *
31343849 AT-CTTA-G-ATTGGGAATGAACTCTGTATGCCTAAGTCATCCCACGAAACGAGCGTACGGGCGC
1 ATGCTTAGGCA-T-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * *
31343911 TGAGCCAGCTGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCC
64 TCAGCC-GCTGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCC
* * * * * *
31343976 GGTGCTGCTCCCCTAACCCTCGATATGGCTG
128 GATCCTACTACCCTAACCCTCAATATGGCCG
* ** * * * *
31344007 GTGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGAGCGCTC
1 ATGCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
31344072 AGCCGGC-CAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGAT-CCCCGCTGCTTGCTGCCA
66 AGCC-GCTGA-AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCG
31344135 ATCCT
129 ATCCT
31344140 GCTGCCGCAA
Statistics
Matches: 240, Mismatches: 43, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
158 30 0.12
159 154 0.64
160 53 0.22
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
ATGCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGCTGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGAT
CCTACTACCCTAACCCTCAATATGGCCG
Found at i:31344758 original size:159 final size:159
Alignment explanation
Indices: 31344403--31344840 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 159
31344393 ACTTCGTATG
* *
31344403 CTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * * *
31344468 CGGCCAGAGAGGCAGAATGCACAAGTCGAGGA-CCGACCTAGTCCCCCCTACGTGCTATCAATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGACCTAGTCCCCCCTACGTGCTACCAATCC
* *
31344532 TGCTACCGCAACCCTCGGTCCGATCCAAT
131 CGCTACCACAACCCTCGGTCCGATCCAAT
* * * * * * * * * *
31344561 CTTAGA-TTGGGAATGAGCTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGTGATGAA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * **
31344625 CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAG-CTTAGTCCCCCTCTGCGTGCTACCGGT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGACCTAGTCCCCC-CTACGTGCTACCAAT
* * * ***
31344689 CCCGCTGCCACAACCCTCGGTTCGGTTTGGA-
129 CCCGCTACCACAACCCTCGG-TCCGATCCAAT
* *
31344720 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GTCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAG-CGTACGGGCGCTCAG
* * * **
31344784 CTGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATC-GGCCCGGTCCCCCCTACGTGCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGACCTAGTCCCCCCTACGTGCT
31344841 GCCGATCCTA
Statistics
Matches: 225, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 99 0.44
159 119 0.53
160 6 0.03
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGACCTAGTCCCCCCTACGTGCTACCAATCC
CGCTACCACAACCCTCGGTCCGATCCAAT
Found at i:31345269 original size:26 final size:26
Alignment explanation
Indices: 31345233--31345284 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31345223 TCCGGTCTGA
*
31345233 TCTTAGACTGGGAATGAACTTCATAT
1 TCTTAGACTGGGAATGAACTCCATAT
*
31345259 TCTTAGACTGGGGATGAACTCCATAT
1 TCTTAGACTGGGAATGAACTCCATAT
31345285 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCATAT
Found at i:31345725 original size:711 final size:696
Alignment explanation
Indices: 31344570--31346185 Score: 1563
Period size: 711 Copynumber: 2.3 Consensus size: 696
31344560 TCTTAGATTG
* * * * * * * * ** *
31344570 GGAATGAGCTCCA-TATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGTGATGAACCGGCCGGA
1 GGAATGAACT-CAGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAACCAGA
* ** ** *
31344634 GAGGCATAATGCGCAAGCC-GAGGATCAG-CTTAGTCCCCCTCTGCGTGCTACCGGTCCCGCTGC
65 GAGGCATAATGCGAAAGCCAG-GGAT-AGCCCGA-TCCCCCTCTGCGTGCTGTCGGTCCCACTGC
* * *** * * **
31344697 CACAACCCTCGGTTCGGTTTGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
127 CACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
* * * * *
31344762 AAACGGTCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGT
192 AAACGGTCGTGCGGGCGCTCAACCGGCCGGAGAGGCAAAATGCGCAACCCAAGGATCGGCCCGAT
* * *
31344827 CCCCCCTACGTGCTGCCGATCCTACTGCTGGTCCTGCTGCCGCAACCCTTGGTACGGTTTGATCT
257 CCCCCCTACGTGCTACCGATCCTACTACTGGTCCTGCTGCCGCAACCCTTGGTACGGTCTGATCT
* *
31344892 TAGATTGGGAATGAACTCCGTAAGCTTAGACATAGAATGAACTCCGTATGCAAAAGTCAAACCAC
322 TAGACTGGGAATGAACTCCGTAAGCTTAGACATAGAATGAACTCCGTATGCAAAAGCCAAACCAC
* * * * ** *
31344957 GAAATGAGCGTGCGGGGTCGGAGTCGACCGAAGAGGCATAATACGTAAGTTGGGGATC-AGCTCG
387 GAAATGAGCGTGCGGGCTC-GAGTCGACCGAAGAGACAAAATACATAAGCCGGGGATCGATC-CG
* * * * * * * *
31345021 GTCCCCTCTCTATGTGCTG-CAGGTCCCGCTGCCACAACCCTCGGTTCG-GCTAGGGCTTAGACA
450 GTCCCCTC-CCACGTGCAGTCA-ATCCCGCTGCCACAACCCTCAGTCCGATC-AGAGCTTAGAC-
* * * ** *
31345084 T-CGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGTTACTCAGTCGGCCAG
511 TGCGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTACTCAACCGACCAG
*
31345148 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGA-TCCTACTGTT
576 AGAGGCAGAATGCGCAAGCCGGGGATAGGCCCAGTCCCCCCTGCATGCTGTCGACTCCTACTGTT
* * *
31345212 GCAACCCTTGATCCGG-TCTGATCTTAGACTGGGAATGAACTTCATATTCTTAGAC-T
641 GCAACCATCGATCCGGTTC-GATCTTAGACTGGGAATGAAC-TCATATGCTTAGACAT
* * * ****
31345268 GGGGATGAACTCCA-TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCGGTTAG
1 -GGAATGAACT-CAGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAACCAG
*
31345332 AGAGGCATAATGC-ACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGCTGATCCCACTGC
64 AGAGGCATAATGCGA-AAGCCAGGGAT-AGCCCGATCCCCCTCTGC--G-TGCTG-T----C-G-
** * * *
31345396 CGATCCTGCTGCCACAACCCTC-GATCCAACTGGGGCTTAGACATAGAATGAACTCCGTATGGCT
117 -G-TCCCACTGCCACAACCCTCAG-TCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * *
31345460 AAGCCAACCCACAAAACGAGT-GTGCGGGTGCTCAACCGGCCGGAGAGGTAAAATGTGCAACCCG
179 AAGCCAACCCACAAAACG-GTCGTGCGGGCGCTCAACCGGCCGGAGAGGCAAAATGCGCAACCCA
* ** * * * **
31345524 GGGATCGGTTCGATCCCCCCTGCGTGCTATCGATCCTGCTACTGGTCCTGCTGTTGCAACCCTTG
243 AGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCTACTACTGGTCCTGCTGCCGCAACCCTTG
* * * * * *
31345589 GTTCGGTCTGATCTTATACTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCTGTATGC
308 GTACGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACATAGAATGAACTCCGTATGC
** * * * * ** * *
31345654 CTATGCCAACCCATGAAATGAGTGTGCGAGCGCTC-AGTCGGTCGGAGAGACAAAATGCATAAGC
373 AAAAGCCAAACCACGAAATGAGCGTGCG-G-GCTCGAGTCGACCGAAGAGACAAAATACATAAGC
* * ** *
31345718 CGGGGATCGATCCGTTCCCCTCCCGCGTGCAGTCAATCTTGCTGCCACAACCCTCAGTCCGATCC
436 CGGGGATCGATCCGGTCCCCTCCCACGTGCAGTCAATCCCGCTGCCACAACCCTCAGTCCGATCA
* * * * ** *
31345783 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGTGGGTGCTC
501 GAGCTTAGACTGCGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTACTC
* * * * *
31345848 AACCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATAGGCCCGGTCCCCCCTGCGTGCTGTCGAT
566 AACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCAGTCCCCCCTGCATGCTGTCGA-
* * *
31345913 CCTGCTGCTGGTCCTACTGTTGCAACCATCGATTCGGTTCGATCTTATACTGGGAATGAACTCGT
630 -------C---TCCTACTGTTGCAACCATCGATCCGGTTCGATCTTAGACTGGGAATGAACTCAT
31345978 ATGCTTAGACAT
685 ATGCTTAGACAT
** *
31345990 GGAATGAACTCAGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAACCGGAG
1 GGAATGAACTCAGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAACCAGAG
* * *
31346055 AGGCATAATGCGAAAGCCGGGGATTGGCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACA
66 AGGCATAATGCGAAAGCCAGGGATAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACA
* *
31346120 ACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGACAA-CCACAAAAC
131 ACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
31346184 GG
196 GG
31346186 GCATGTGGCC
Statistics
Matches: 743, Mismatches: 134, Indels: 73
0.78 0.14 0.08
Matches are distributed among these distances:
699 87 0.12
700 2 0.00
701 1 0.00
702 4 0.01
706 1 0.00
707 11 0.01
708 60 0.08
709 3 0.00
710 136 0.18
711 273 0.37
712 6 0.01
713 3 0.00
716 1 0.00
717 5 0.01
718 1 0.00
720 17 0.02
721 85 0.11
722 45 0.06
723 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (696 bp):
GGAATGAACTCAGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAACCAGAG
AGGCATAATGCGAAAGCCAGGGATAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGCCACA
ACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
GGTCGTGCGGGCGCTCAACCGGCCGGAGAGGCAAAATGCGCAACCCAAGGATCGGCCCGATCCCC
CCTACGTGCTACCGATCCTACTACTGGTCCTGCTGCCGCAACCCTTGGTACGGTCTGATCTTAGA
CTGGGAATGAACTCCGTAAGCTTAGACATAGAATGAACTCCGTATGCAAAAGCCAAACCACGAAA
TGAGCGTGCGGGCTCGAGTCGACCGAAGAGACAAAATACATAAGCCGGGGATCGATCCGGTCCCC
TCCCACGTGCAGTCAATCCCGCTGCCACAACCCTCAGTCCGATCAGAGCTTAGACTGCGAATGAA
CTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTACTCAACCGACCAGAGAGGCAGAA
TGCGCAAGCCGGGGATAGGCCCAGTCCCCCCTGCATGCTGTCGACTCCTACTGTTGCAACCATCG
ATCCGGTTCGATCTTAGACTGGGAATGAACTCATATGCTTAGACAT
Found at i:31345763 original size:355 final size:353
Alignment explanation
Indices: 31345398--31346184 Score: 985
Period size: 355 Copynumber: 2.2 Consensus size: 353
31345388 CCCACTGCCG
* *
31345398 ATCCTGCTGCCACAACCCTC-GATCCAACTGGGGCTTAGACATAGAATGAACTCCGTATGGCTAA
1 ATCCTGCTGCCACAACCCTCAG-TCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * *
31345462 GCCAACCCACAAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGAGGTAAAATGTGCAACCCGGGG
65 GCCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAACCCGGGG
* ** * * * *
31345527 ATCGGTTCGATCCCCCCTGCGTGCTATCGATCCTGCTACTGGTCCTGCTGTTGCAACCCTTGGTT
130 ATAGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTACTGGTCCTACTGTTGCAACCATCGATT
* *
31345592 CGG-TCTGATCTTATACTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCT
195 CGGTTC-GATCTTATACTGGGAATGAACT-CGTATGCTTAGACATGGAATGAACTCAGTATGCCT
* * * * ***
31345656 ATGCCAACCCATGAAATGAGTGTGCGAGCGCTCAGTCGGTCGGAGAGACAAAATGC-ATAAGCCG
258 AAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCAACCGGAGAGACAAAATGCGA-AAGCCG
* *
31345720 GGGATCGATCCG-TTCCCCTCCCGCGTGCAGTCA
322 GGGATCG-GCCGATCCCCCT-CCGCGTGCAGTCA
* * * **
31345753 ATCTTGCTGCCACAACCCTCAGTCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
1 ATCCTGCTGCCACAACCCTCAGTCCAACT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTA
* * * * * *
31345816 AGCCAACCCATAAAACGAGCGTGTGGGTGCTCAACCGATCGGAGAGGCAGAATGCGTAAGCCGGG
64 AGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAACCCGGG
* * *
31345881 GATAGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTGTTGCAACCATCGAT
129 GATAGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTACTGGTCCTACTGTTGCAACCATCGAT
31345946 TCGGTTCGATCTTATACTGGGAATGAACTCGTATGCTTAGACATGGAATGAACTCAGTATGCCTA
194 TCGGTTCGATCTTATACTGGGAATGAACTCGTATGCTTAGACATGGAATGAACTCAGTATGCCTA
* * * *
31346011 AGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAACCGGAGAGGCATAATGCGAAAGCCGGG
259 AGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCAACCGGAGAGACAAAATGCGAAAGCCGGG
* * * *
31346076 GATTGGCCGATCCCCCTCTGCGTGCTGTCG
324 GATCGGCCGATCCCCCTCCGCGTGCAGTCA
* ** * *
31346106 GTCCCACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 ATCCTGCTGCCACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
*
31346171 ACAA-CCACAAAACG
66 CCAACCCACAAAACG
31346185 GGCATGTGGC
Statistics
Matches: 366, Mismatches: 58, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
352 9 0.02
353 67 0.18
354 101 0.28
355 186 0.51
356 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (353 bp):
ATCCTGCTGCCACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAACCCGGGGA
TAGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTACTGGTCCTACTGTTGCAACCATCGATTC
GGTTCGATCTTATACTGGGAATGAACTCGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAG
CCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCAACCGGAGAGACAAAATGCGAAAGCCGGGGA
TCGGCCGATCCCCCTCCGCGTGCAGTCA
Found at i:31346713 original size:159 final size:157
Alignment explanation
Indices: 31346358--31346765 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 157
31346348 AACTCTGTAT
* * * * *
31346358 GCTTAGACATGGAATAAAATCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAA
1 GCTTA-ACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* *
31346423 CCGATCGGAGAGGCAGAATGCGCAAGCCAAAGAATCAGCCCGGCCCCCCTGCGTGCTATCGATCC
65 CCGATCGGAGAGGCAGAATGCACAAGCCAAAGAATCAGCCCGGCCCCCCTGCGTGCTACCGATCC
** ** * * *
31346488 TGCTACTGCAACCCTTGGTTCGGTCTGA
130 CACTACCACAACCCTCGGTTCCGACTGA
* * * *
31346516 TCTTAA-ATTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAACA-T-GGAATGAAATCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
31346580 GCCGATCGGAGAGCCATAATGCACAAGCC-GAGGATCGGCTCGGTCCTCCTCTGCGTGCTGCCGA
64 GCCGATCGGAGAGGCAGAATGCACAAGCCAAAGAATCAGCCCGG-CC-CCCCTGCGTGCTACCGA
* *
31346644 TCCCACTGCCACAACCCTCGG-TCCGACTGGG
127 TCCCACTACCACAACCCTCGGTTCCGACT-GA
* * * * * * *
31346675 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGAGGGTGCTTAG
1 GCTTA-ACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* *
31346740 CCGGTCGGAGAGGTAGAATGCACAAG
65 CCGATCGGAGAGGCAGAATGCACAAG
31346766 TCGGGGATTG
Statistics
Matches: 202, Mismatches: 41, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 12 0.06
158 83 0.41
159 103 0.51
160 2 0.01
161 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAACATGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCACAAGCCAAAGAATCAGCCCGGCCCCCCTGCGTGCTACCGATCCC
ACTACCACAACCCTCGGTTCCGACTGA
Found at i:31353618 original size:26 final size:26
Alignment explanation
Indices: 31353578--31353630 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31353568 GGCTCAAAAT
31353578 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
31353604 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
31353630 C
1 C
31353631 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:31354649 original size:26 final size:26
Alignment explanation
Indices: 31354598--31354650 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31354588 GGCTCAAAAT
**
31354598 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
31354624 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
31354650 C
1 C
31354651 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:31354833 original size:26 final size:26
Alignment explanation
Indices: 31354782--31354834 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31354772 CTGGTCCAAT
*
31354782 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31354808 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
31354834 C
1 C
31354835 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31355689 original size:26 final size:26
Alignment explanation
Indices: 31355660--31355712 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31355650 CCGATCTGAT
*
31355660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31355686 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31355712 C
1 C
31355713 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31356761 original size:26 final size:26
Alignment explanation
Indices: 31356725--31356777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31356715 TCAGTTTGAT
* *
31356725 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31356751 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31356777 C
1 C
31356778 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31357143 original size:26 final size:26
Alignment explanation
Indices: 31357105--31357157 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31357095 TCGGTTCGAT
*
31357105 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31357131 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31357157 C
1 C
31357158 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31357488 original size:160 final size:159
Alignment explanation
Indices: 31357130--31357579 Score: 473
Period size: 159 Copynumber: 2.8 Consensus size: 159
31357120 AACTCTGTAT
* *
31357130 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
* * * * * * *
31357195 CCAGTCGGAAAGGCAGAATGAGAAATCCAGGGATC-GACCC-AGTCCCCCCTGCGTGCTGTCGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGAGTCCCCCCTGCGTGCTGCCGAT
* * *** *
31357258 CCTAGTGTCGCAACCCTTGGTCCGGTCTGA
130 CCTAGTGCCACAACCCTCAATCCAGTCTGA
* * * *
31357288 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCA
* * *
31357352 GCACGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGA-TCCCCCTTTGTGTGCTGCCG
65 GC-CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAGTCCCCC-CTGCGTGCTGCCG
* * * *
31357416 GT-CTCGTTGCCACAATCCTCAATCCAG-CTGGG
128 ATCCTAG-TGCCACAACCCTCAATCCAGTCT-GA
* * * *
31357448 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
* ** * * *
31357513 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCG-GTTGCCCTTGCGTGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAGTCCCCCCTGCGTGCTGCCGATC
31357577 CTA
131 CTA
31357580 CTACCATAAC
Statistics
Matches: 239, Mismatches: 43, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
157 1 0.00
158 69 0.29
159 85 0.36
160 83 0.35
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAGTCCCCCCTGCGTGCTGCCGATC
CTAGTGCCACAACCCTCAATCCAGTCTGA
Found at i:31357544 original size:159 final size:159
Alignment explanation
Indices: 31357130--31357579 Score: 466
Period size: 160 Copynumber: 2.8 Consensus size: 159
31357120 AACTCTGTAT
* *
31357130 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
* * * * * *
31357195 CCAGTCGGAAAGGCAGAATGAG-AAATCCAGGGATC-GACCC-AGTCCCCCCTGCGTGCTGTCGA
66 CCGGTCGGAGAGGCAGAATGCGCAAGT-CGGGGATCAG-CCCGAGTCCCCCCTGCGTGCTGCCGA
* * *** *
31357257 TCCTAGTGTCGCAACCCTTGGTCCGGTCTGA
129 TCCTAGTGCCACAACCCTCAATCCAGTCTGA
* * * *
31357288 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCA
* * * *
31357352 GCACGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGA-TCCCCCTTTGTGTGCTGCCG
65 GC-CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGAGTCCCCC-CTGCGTGCTGCCG
* * * *
31357416 GT-CTCGTTGCCACAATCCTCAATCCAG-CTGGG
128 ATCCTAG-TGCCACAACCCTCAATCCAGTCT-GA
* * * *
31357448 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
** * * *
31357513 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCG-GTTGCCCTTGCGTGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGAGTCCCCCCTGCGTGCTGCCGATC
31357577 CTA
131 CTA
31357580 CTACCATAAC
Statistics
Matches: 238, Mismatches: 43, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
157 1 0.00
158 69 0.29
159 82 0.34
160 85 0.36
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGAGTCCCCCCTGCGTGCTGCCGATC
CTAGTGCCACAACCCTCAATCCAGTCTGA
Found at i:31358726 original size:159 final size:158
Alignment explanation
Indices: 31358352--31358767 Score: 405
Period size: 159 Copynumber: 2.6 Consensus size: 158
31358342 ACTCCGTATG
* * * *
31358352 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACACACGAAACGAGTGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGC
*** * *
31358417 CG-GTTAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCGCCCCTACGTGTTATCGATCC
66 CGACCGA-AGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCGCCCCTACGTGCTACCGATCC
* * *
31358481 TGCTGCCACAACCCTCGGTCCTGTCCGAT
130 CGCTACCACAACCCTCAGTCCTGTCCGAT
* * * * * * *
31358510 CTTAGAC-TGGGAATGAACTC-CGTATACATAAGTCAACCCATGAAACGAGCGTACGGGCACTGA
1 CTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
* *
31358573 GCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCC-AGTC-CTCCTCTGCGTGCTACCG
64 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGA-TCGC-CC-CTACGTGCTACCG
* * ** *
31358636 GTCCCGCTACCACAATCCTCAGT-CTGACTGGGGT
126 ATCCCGCTACCACAACCCTCAGTCCTG--TCCGAT
* *
31358670 -TTAGACATGGAATGAACTCTCTATGCCGAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGC
** * * * *
31358734 TTACCGGAGAGGCAGATTGCGTAAGCCGGGGATC
66 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATC
31358768 GACCTGGTCC
Statistics
Matches: 206, Mismatches: 42, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 91 0.44
159 107 0.52
160 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCGCCCCTACGTGCTACCGATCCC
GCTACCACAACCCTCAGTCCTGTCCGAT
Found at i:31358863 original size:26 final size:26
Alignment explanation
Indices: 31358827--31358882 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
31358817 CTGGTTTGAT
31358827 CCTAGAATGGGAATGAACTCCGTATG
1 CCTAGAATGGGAATGAACTCCGTATG
* *
31358853 CCTAGACTGGGGATGAACTCCGTATG
1 CCTAGAATGGGAATGAACTCCGTATG
31358879 CCTA
1 CCTA
31358883 AGTCAACCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (26 bp):
CCTAGAATGGGAATGAACTCCGTATG
Found at i:31359233 original size:26 final size:26
Alignment explanation
Indices: 31359195--31359247 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31359185 CCAATCCTAT
31359195 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31359221 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31359247 C
1 C
31359248 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31360774 original size:26 final size:26
Alignment explanation
Indices: 31360722--31360774 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31360712 CCAGTCCGAT
*
31360722 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
31360748 CTTAGACTAGGG-ATGAACTCCGCATG
1 CTTAGACT-GGGAATGAACTCCACATG
31360774 C
1 C
31360775 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:31361468 original size:26 final size:26
Alignment explanation
Indices: 31361430--31361508 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
31361420 CCAGTTTGAT
* *
31361430 CTTAGAC-TGGGAACGAACTCTGAATG
1 CTTAGACAT-GGAACAAACTCCGAATG
*
31361456 CTTAGACATGGAATAAACTCCGAATG
1 CTTAGACATGGAACAAACTCCGAATG
* *
31361482 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAACAAACTCCGAATG
31361508 C
1 C
31361509 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAACAAACTCCGAATG
Found at i:31362038 original size:26 final size:26
Alignment explanation
Indices: 31362009--31362060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31361999 CGATCCGATA
*
31362009 TTAGAC-TGGGAATTAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
31362035 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
31362061 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Done.