Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 341 of 402
Found at i:31362458 original size:159 final size:156
Alignment explanation
Indices: 31362033--31362534 Score: 463
Period size: 159 Copynumber: 3.2 Consensus size: 156
31362023 AACTCCGTAT
* * *
31362033 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCGTACGGGTGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * ** * ***
31362098 CCAGCCGGAGAGGTAGAATGCATAAGCCGGGGATCGACTCGGGCCCCCCTGCATGCTGTTGATCT
66 CCAGCCGGAGAGGCAGAATGCGTAAGCC-GGGATCGACTCGATCCCCCCTGCGTGCTACCGATCT
* * *
31362163 TGCTGTCGCAACCCTTGGTCTGGTCCG
130 TGCTGCCACAACCCTCGGTCTGGTCCG
** * * * * * * *
31362190 ATTGTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTG
1 GCT-TAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTC
* * * * * * * *
31362254 AGCCAGCCAGAGAGGCATAATGTGCAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGG
64 AGCCAGCCGGAGAGGCAGAATGCGTAAGCCG-GGATCGACTCGATCCCCC-CTGCGTGCTACCGA
**
31362319 TCTTGCTGCCACAACCCTCGGTCTGGCTGGG
127 TCTTGCTGCCACAACCCTCGGTCTGG-TCCG
* * *
31362350 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGTGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * **
31362415 CC-GCCTGGAGAGGCAGAATGCGTAAGCCAGGGATTGTCTCGAT-CCCCCTGCGTGCTGTCGATC
66 CCAGCC-GGAGAGGCAGAATGCGTAAGCC-GGGATCGACTCGATCCCCCCTGCGTGCTACCGATC
* * * * * *
31362478 CTGTTGTCGCAACCCTCGATCTGGTCTG
129 TTGCTGCCACAACCCTCGGTCTGGTCCG
*
31362506 ATCTTAGACTA-GGAATGAACTCCGTATGC
1 -GCTTAGA-TATGGAATGAACTCCGTATGC
31362535 TTAGACTGCG
Statistics
Matches: 270, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 57 0.21
158 96 0.36
159 111 0.41
160 4 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (156 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGATCGACTCGATCCCCCCTGCGTGCTACCGATCTT
GCTGCCACAACCCTCGGTCTGGTCCG
Found at i:31363626 original size:159 final size:157
Alignment explanation
Indices: 31363254--31363670 Score: 449
Period size: 159 Copynumber: 2.6 Consensus size: 157
31363244 AACTCCGTAT
* *
31363254 GCTTAAACATGGAATGAATTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
31363319 CCGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCAGCCCAGTCCCCCCTACATGCTATCGATCC
65 CCGGCCGAAGAGGCAGAATGAGCAAGCCAGGGATCAGCCCAGTCCCCCCTACATGCTACCGATCC
** ** * * *
31363384 TGCTTTCACAACCCTCAGTTCGGTTCGA
130 CACTGCCACAACCCTCAGTCCGGCTAGA
* * * * * * * *
31363412 TCTTAGA-TTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGCGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
31363476 GCCGGCCGAAGAGGCATAATGTGTAGGTCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGT
64 GCCGGCCGAAGAGGCAGAATGAGCAAGCCAGGGATCAGCCCAGTCCCCC-CTACATGCTACCGAT
*
31363541 CCCACTGCCACAACCCTCAGTCCGGCTAGG
128 CCCACTGCCACAACCCTCAGTCCGGCTAGA
* * * * *
31363571 GCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGGAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
31363636 CCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATC
65 CCGGCCGAAGAGGCAGAATGAGCAAGCCAGGGATC
31363671 GACCCGATCC
Statistics
Matches: 208, Mismatches: 46, Indels: 9
0.79 0.17 0.03
Matches are distributed among these distances:
157 1 0.00
158 93 0.45
159 113 0.54
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGAGCAAGCCAGGGATCAGCCCAGTCCCCCCTACATGCTACCGATCCC
ACTGCCACAACCCTCAGTCCGGCTAGA
Found at i:31363778 original size:26 final size:26
Alignment explanation
Indices: 31363742--31363794 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31363732 CCGGCCCGAT
31363742 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
31363768 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
31363794 C
1 C
31363795 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:31363911 original size:196 final size:196
Alignment explanation
Indices: 31363571--31364096 Score: 678
Period size: 196 Copynumber: 2.7 Consensus size: 196
31363561 TCCGGCTAGG
* * * * *
31363571 GCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGGAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
31363636 CCGGC-CGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCTCTTGCGTGCTGTCGGTC
66 CCGGCTAG-AGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
* ** * *
31363700 CTACTGCTCGTCCTGCTGTCGCAACCCTCGATCCGGCCCGATCTTAGACAT-GGAATGAACTCCA
130 CTGCTGCTCGTCCTGCTACCGCAACCCTCGATCCGACCCAATCTTAGAC-TGGGAATGAACTCCA
31363764 TAT
194 TAT
* * *
31363767 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
31363832 CCGACTAGAGAGGTAGAATGCGCAAGTCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGCTAGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * ***
31363897 TGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTTTGTA
131 TGCTGCTCGTCCTGCTACCGCAACCCTCGATCCGACCCAATCTTAGACTGGGAATGAACTCCATA
31363962 T
196 T
* * * *
31363963 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
31364028 CCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCGGTTCCCCCTGCGTGCTGTCGATCT
66 CCGGCTAGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
31364093 TGCT
131 TGCT
31364097 ACCACAACCC
Statistics
Matches: 283, Mismatches: 45, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
195 1 0.00
196 281 0.99
197 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCTAGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCTCGTCCTGCTACCGCAACCCTCGATCCGACCCAATCTTAGACTGGGAATGAACTCCATA
T
Found at i:31363988 original size:26 final size:26
Alignment explanation
Indices: 31363938--31363990 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31363928 CCGATCCAAT
**
31363938 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31363964 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31363990 C
1 C
31363991 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31364318 original size:159 final size:158
Alignment explanation
Indices: 31363964--31364327 Score: 383
Period size: 158 Copynumber: 2.3 Consensus size: 158
31363954 ACTTTGTATG
* * *
31363964 CTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
* * * * * * **
31364029 CGGTTGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCGGTTCCCCCTGCGTGCTGTCGATCTT
66 CGGCTGGAGAGGAAGAATGCGCAAGCCGAGGACCGACCCGGTTCCCCCTACATGCTATCGATCCC
*
31364094 GCTACCACAACCCTCAGTCCGGTCTGAT
131 GCTACCACAACCCTCAGTCCGGACTGAT
* * * * *
31364122 CTTAGAC-TGGGAATGAACACTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * * * * * *
31364186 TCGGCTGGAGAGGAATAATGCGCAAGTCGAGGATCGGCTCGG-TCCCCCTTTACATGCTATCGGT
65 CCGGCTGGAGAGGAAGAATGCGCAAGCCGAGGACCGACCCGGTTCCCCC--TACATGCTATCGAT
* * *
31364250 CCCGCTGCCACAACCCTCAGT-CTGACTGGGT
128 CCCGCTACCACAACCCTCAGTCCGGACT-GAT
* * * * *
31364281 TTTAGTCATGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
31364328 GGCATACGGG
Statistics
Matches: 166, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 7 0.04
158 92 0.55
159 66 0.40
160 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
CGGCTGGAGAGGAAGAATGCGCAAGCCGAGGACCGACCCGGTTCCCCCTACATGCTATCGATCCC
GCTACCACAACCCTCAGTCCGGACTGAT
Found at i:31364472 original size:25 final size:26
Alignment explanation
Indices: 31364438--31364489 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
31364428 CCGGTCCGAT
31364438 CTTAGACTGGGAATGAA-TCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31364463 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31364489 C
1 C
31364490 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31364546 original size:13 final size:13
Alignment explanation
Indices: 31364528--31364553 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31364518 GGCACTCAGT
31364528 CGATCGGAGAGGC
1 CGATCGGAGAGGC
31364541 CGATCGGAGAGGC
1 CGATCGGAGAGGC
31364554 AAAAAGTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:31364684 original size:26 final size:26
Alignment explanation
Indices: 31364646--31364698 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31364636 CTGGTCTGAT
31364646 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31364672 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31364698 C
1 C
31364699 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31364816 original size:709 final size:703
Alignment explanation
Indices: 31363230--31364930 Score: 1878
Period size: 709 Copynumber: 2.4 Consensus size: 703
31363220 TCTCAAAATT
* * *
31363230 TTAGACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAATTCCGTATGCCTAAGCTAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
** *
31363295 CGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGAGCAAGCCAGGGATCAGCCC-
66 CGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCAGCCCG
* * * ** * *
31363359 AGTCCCCCCTA-CATGCTATCGATCCTGCTTTCACAACCCTCAGTTCGGT-TCGATCTTAGATTG
130 A-TCCCCCCCAGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCT-GATCTTAGACTG
* * * * * * * *
31363422 GGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGCGTGTGCGGGCACTGAGCCGGCCGAAG
193 GGAATGAACCT-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGTCGGCCGGAG
* * * * * *
31363487 AGGCATAATGTGTAGGTC-AGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGTCCCACTGCCA
257 AGGCATAATGCGCAAGTCGA-GGATCGGCCCAGTCCCCCTCTACATGCTACCGGTCCCACTGCCA
* *
31363551 CAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGGA
321 CAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGAA
* * * * ** *
31363616 ACGGGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCC
386 ACGGGCATACGGGAGCTCAACCGACCGAAGAGGCAGAATGCGCAAACCGGGGATCGACCAGATCC
* *
31363681 CTCTTGCGTGCTGTCGGTCCTACTGCTCGTCCTGCTGTCGCAACCCTCGATCCGGCCCGATCTTA
451 CTCTTGCGTACTGTC-G--C--CTGCTCGTCCTACTGTCGCAACCCTCGATCCGGCCCGATCTTA
*
31363746 GACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAA
511 GACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* * * * * * *
31363811 AACGAGCGTGCGAGCGCTCAACCGACTAGAGAGGTAGAATGCGCAAGTCAGGGATCGGCTCGGTC
576 AACGAGCGTGCCAGCGATCAACCGACTAGAGAGGCAAAAAGCGCAAGTCAGGGATCAGCTCGATC
*
31363876 CCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGATCCAATC
641 CCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCATCGATCCGATCCAATC
** *
31363939 TTAGACTGGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
31364004 TGAAACGAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGA-CCGACCC
66 CGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCAG-CCC
* * * *
31364068 GGT-TCCCCCTGCGTGCTGTCGATCTTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGG
129 GATCCCCCCCAGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGG
* * *
31364132 GAATGAACACTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAGTCGGCTGGAGA
194 GAATGAAC-CTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGTCGGCCGGAGA
* * * * * *
31364197 GGAATAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCTTTACATGCTATCGGTCCCGCTGCCACA
258 GGCATAATGCGCAAGTCGAGGATCGGCCCAGTCCCCCTCTACATGCTACCGGTCCCACTGCCACA
* * * * * *
31364262 ACCCTCAGTCTGACT-GGGTTTTAGTCATGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAA
323 ACCCTCAGTCCGACTAGGG-CTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGAAA
* * * * * *
31364326 CGGGCATACGGGAGCTCAGCTGATCGGAGAGGCAGAATGTGCAAACCGGGGATCGGCCAG-TCCC
387 CGGGCATACGGGAGCTCAACCGACCGAAGAGGCAGAATGCGCAAACCGGGGATCGACCAGATCCC
* * *
31364390 -C-T-C-TAC-GT-G-CTGC-CGATCCTACTGTCGCAACCCTTGGTCCGGTCCGATCTTAGAC-T
452 TCTTGCGTACTGTCGCCTGCTCG-TCCTACTGTCGCAACCCTCGATCCGGCCCGATCTTAGACAT
* * **
31364446 GGGAATGAA-TCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
516 -GGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC
* * *
31364509 GAGCGTACGGGCACTCAGTCGATCGGAGAGGCCGA-TCGGAGAGGCAAAAAGTGCAAG-CTGGGG
579 GAGCGT----G--C-CAG-CGATC--A-A--CCGACT-AGAGAGGCAAAAAGCGCAAGTC-AGGG
* * * *
31364572 ATCAGCTCGATGCCCCCTGCGTGCTGTTGATCCTGCTGCTGGTCCTGCTACCGTAACCATTGATC
629 ATCAGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCATCGATC
* * **
31364637 TGGTCTGATC
694 CGATCCAATC
*
31364647 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * **
31364712 CAAAACGAGCGTACGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTTGGGTATCAGCCCG
66 CGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCAGGG-ATCAGCCCG
* * * * *
31364777 ATCCCCCCCAGCGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGG
130 ATCCCCCCCAGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGG
* * * * * *
31364842 GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGTCGACCAGAGAG
195 AATGAAC-CTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGTCGGCCGGAGAG
** *
31364907 GCAGGATGCGCTAGTCGAGGATCG
259 GCATAATGCGCAAGTCGAGGATCG
31364931 AACGGGTGAT
Statistics
Matches: 828, Mismatches: 136, Indels: 56
0.81 0.13 0.05
Matches are distributed among these distances:
694 1 0.00
695 56 0.07
696 47 0.06
699 1 0.00
701 2 0.00
702 2 0.00
703 6 0.01
704 2 0.00
705 2 0.00
706 2 0.00
707 6 0.01
708 209 0.25
709 489 0.59
710 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (703 bp):
TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCAGGGATCAGCCCGA
TCCCCCCCAGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGA
ATGAACCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGTCGGCCGGAGAGGC
ATAATGCGCAAGTCGAGGATCGGCCCAGTCCCCCTCTACATGCTACCGGTCCCACTGCCACAACC
CTCAGTCCGACTAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGAAACGGG
CATACGGGAGCTCAACCGACCGAAGAGGCAGAATGCGCAAACCGGGGATCGACCAGATCCCTCTT
GCGTACTGTCGCCTGCTCGTCCTACTGTCGCAACCCTCGATCCGGCCCGATCTTAGACATGGAAT
GAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTG
CCAGCGATCAACCGACTAGAGAGGCAAAAAGCGCAAGTCAGGGATCAGCTCGATCCCCCCTGCGT
GCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCATCGATCCGATCCAATC
Found at i:31366200 original size:159 final size:157
Alignment explanation
Indices: 31365916--31366401 Score: 517
Period size: 159 Copynumber: 3.1 Consensus size: 157
31365906 ACATGAAATA
* * * * * * * *
31365916 AACTCCGTATGCTTAAGCCAACCCATGAAACGAGCATGCAGGCGCTCAATCGACTGGAGAGGCAG
1 AACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAG
* * ** * * *
31365981 AATGCACAAGCCGAGGATCAGCCCGATCCCCCCCAGCGTGCTGTCGATCCTACTGTCACAACCCT
66 AATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTA-CGTGCTGTCGATCCTACTGCCACAACCCT
*
31366046 CGATCCGGTCTAATCTTAGACTAGGAATG
130 CG-TCCGGTCTGATCTTAGACTAGGAATG
* * * * *
31366075 AACTCCGTATACCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTGAGCCGACCGGAGAGGCAT
1 AACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAG
* * * *
31366140 AATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTTTATGTGCTGTCGGTCCCACTGCCACAACCCT
66 AATGCGCAAGCCGGGGATTGGCCCGGTCCCCC-CTACGTGCTGTCGATCCTACTGCCACAACCCT
* **
31366205 CTGTCC-GACTGGGGCTTAGAC-ATGGAATG
130 C-GTCCGGTCT-GATCTTAGACTA-GGAATG
* * ** ** *
31366234 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGGTCGGATAGGCAG
1 AACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAG
* * * **
31366299 AATGCGTAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCAATCCTACTGCCGTAACCCTC
66 AATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCCACAACCCTC
*
31366364 GGTCCGGTCTGATCTTAGACTGGGAATG
131 -GTCCGGTCTGATCTTAGACTAGGAATG
*
31366392 AACTTCGTAT
1 AACTCCGTAT
31366402 GCTTAGACTA
Statistics
Matches: 265, Mismatches: 56, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
158 55 0.21
159 208 0.78
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
AACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAG
AATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCCACAACCCTC
GTCCGGTCTGATCTTAGACTAGGAATG
Found at i:31366418 original size:26 final size:26
Alignment explanation
Indices: 31366377--31366426 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
31366367 CCGGTCTGAT
*
31366377 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31366403 CTTAGACTAGGG-ATGAACTCCGTA
1 CTTAGACT-GGGAATGAACTCCGTA
31366427 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31367105 original size:37 final size:37
Alignment explanation
Indices: 31367055--31367129 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
31367045 GTTTAGAACG
31367055 CCCACCCAACTTGCAGGCCAGCCCGTGAGACCAAGGC
1 CCCACCCAACTTGCAGGCCAGCCCGTGAGACCAAGGC
31367092 CCCACCCAACTTGCAGGCCAGCCCGTGAGACCAAGGC
1 CCCACCCAACTTGCAGGCCAGCCCGTGAGACCAAGGC
31367129 C
1 C
31367130 TAGCATACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.44, G:0.24, T:0.08
Consensus pattern (37 bp):
CCCACCCAACTTGCAGGCCAGCCCGTGAGACCAAGGC
Found at i:31373083 original size:26 final size:26
Alignment explanation
Indices: 31373032--31373084 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31373022 GGCTCAAAAT
*
31373032 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
31373058 CTTAGAC-ATGGAATGAGCTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
31373084 C
1 C
31373085 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:31373646 original size:26 final size:26
Alignment explanation
Indices: 31373608--31373659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31373598 CCGGTCCGAT
*
31373608 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31373634 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31373660 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31374140 original size:26 final size:26
Alignment explanation
Indices: 31374111--31374162 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
31374101 CGATCTGATT
31374111 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
31374137 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
31374163 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:31375385 original size:26 final size:26
Alignment explanation
Indices: 31375356--31375411 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
31375346 CCGGTCCGAT
31375356 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31375382 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31375408 CTTA
1 CTTA
31375412 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31375752 original size:26 final size:26
Alignment explanation
Indices: 31375723--31375775 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31375713 TCGGTCTGAT
31375723 CTTAGAC-TAGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
31375749 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
31375775 C
1 C
31375776 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:31377141 original size:25 final size:26
Alignment explanation
Indices: 31377113--31377164 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31377103 CTGGTCCAAT
*
31377113 CTTAGAC-TAGAATGAACTCTGTATG
1 CTTAGACATAGAATGAACTCCGTATG
*
31377138 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
31377164 C
1 C
31377165 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:31377440 original size:159 final size:159
Alignment explanation
Indices: 31377138--31377443 Score: 337
Period size: 159 Copynumber: 1.9 Consensus size: 159
31377128 ACTCTGTATG
** ** *
31377138 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACCGCCCGGGCACTAAGC
* * ** *
31377203 CAGCCGGAGAGCCAGAATGTGTAAGCCAGGGACTAACCTGATCCCCCCCTGTGTGCTGTCGATCA
66 CAGCCGGAGAGCCAGAATGCGTAAGCCAGGGACGAACCTGATCCCCCCCTACGTACTGTCGATCA
* * **
31377268 TGCTGTCGTAACCCTCGGTCTGGTCCAAT
131 CGCTGCCACAACCCTCGGTCTGGTCCAAT
* * * *
31377297 CTTAGAC-TGGGAATGAACTCCTTATGCCTAAGTCAACCCACTAAATGAGCGCCCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACCGCCCGGGCACTAAG
* * * * * * * *
31377361 CCAGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGGACC-GGTCCCCCTCTACGTACTGTCGGT
65 CCAGCCGGAGAGCCAGAATGCGTAAGCCAGGGA-CGAACCTGATCCCCCCCTACGTACTGTCGAT
*
31377425 CCCGCTGCCACAACCCTCG
129 CACGCTGCCACAACCCTCG
31377444 ATCCGACTGG
Statistics
Matches: 118, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
158 1 0.01
159 113 0.96
160 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACCGCCCGGGCACTAAGC
CAGCCGGAGAGCCAGAATGCGTAAGCCAGGGACGAACCTGATCCCCCCCTACGTACTGTCGATCA
CGCTGCCACAACCCTCGGTCTGGTCCAAT
Found at i:31377657 original size:25 final size:26
Alignment explanation
Indices: 31377613--31377664 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
31377603 CTGATCCGAT
*
31377613 CTTAGACTGGGAATGGACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31377639 CTTAGA-TGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31377664 C
1 C
31377665 CTAGTCATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31378333 original size:12 final size:12
Alignment explanation
Indices: 31378312--31378364 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
31378302 TCCTGCATGT
31378312 TACCGATCCTAC
1 TACCGATCCTAC
* *
31378324 TACCGGTCCTGC
1 TACCGATCCTAC
31378336 TACCGATCCTAC
1 TACCGATCCTAC
* * *
31378348 TGCCGGTCCTGC
1 TACCGATCCTAC
31378360 TACCG
1 TACCG
31378365 CAATCCTTAG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.15, C:0.42, G:0.19, T:0.25
Consensus pattern (12 bp):
TACCGATCCTAC
Found at i:31378382 original size:26 final size:24
Alignment explanation
Indices: 31378312--31378364 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
31378302 TCCTGCATGT
*
31378312 TACCGATCCTACTACCGGTCCTGC
1 TACCGATCCTACTGCCGGTCCTGC
31378336 TACCGATCCTACTGCCGGTCCTGC
1 TACCGATCCTACTGCCGGTCCTGC
31378360 TACCG
1 TACCG
31378365 CAATCCTTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.15, C:0.42, G:0.19, T:0.25
Consensus pattern (24 bp):
TACCGATCCTACTGCCGGTCCTGC
Found at i:31378913 original size:158 final size:155
Alignment explanation
Indices: 31378412--31378913 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 155
31378402 ACTCTATATG
* * *
31378412 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA-GGAACGTACGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGG-GCGT-CCGG-GCTCA
* * * *
31378475 GCCGGCTGGAGAGGCAAAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
62 GCCGTC-GGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCTACGTGCTGTCGATC
* ** *
31378540 CTGCTTTCGCAACCCTCGGTCTGGTCCGAT
126 TTGCTACCGCAACCCTCGGTCTGGTCTGAT
* * * * *
31378570 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTCCGGGC--TCAG-
* * * * * * * * * *
31378635 CTGTCGAAGAGACATAATGCGCAAGCCGGGGATCAG-CCTGATCCCCTTCTGCGTGCTATCGGTC
63 CCGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAG-TCCCC-TCTACGTGCTGTCGATC
* * * **
31378699 TCGCTACCACCACCCTCGGTCTGG-CTGGGG
126 TTGCTACCGCAACCCTCGGTCTGGTCT-GAT
* * *
31378729 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCCGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGT-CCGG-GCTCAG
* * ** *
31378793 CCAATCGGAGAGGCAGAATGCGCAAGCTTGGGATTGGCCCAGTCCCCTCTACGTGCTGTCGATCT
63 CC-GTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCTACGTGCTGTCGATCT
*
31378858 TGCTACCGCAACCCTCTGTCTGGTCTGAT
127 TGCTACCGCAACCCTCGGTCTGGTCTGAT
*
31378887 CTTAGGCTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
31378914 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 59, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 136 0.50
159 116 0.43
160 7 0.03
161 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTCCGGGCTCAGCCG
TCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCTACGTGCTGTCGATCTTGCT
ACCGCAACCCTCGGTCTGGTCTGAT
Found at i:31379226 original size:355 final size:343
Alignment explanation
Indices: 31378570--31379260 Score: 753
Period size: 355 Copynumber: 2.0 Consensus size: 343
31378560 CTGGTCCGAT
** * * * *
31378570 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGT
* * * *
31378635 CTGTCGAAGAGACATAATGCGCAAGCCGGGGATCAGCCTGATCCCCTTCTGCGTGCTATCGGTCT
66 CGGCCGAAGAGACATAATGCGCAAGCCGGGGATCAACCTGATCCCCCTCTGCGTGCTATCGGTCT
* * *
31378700 CGCTACCACCACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
* * * * * *
31378765 CCCACAAAACGGGTGTGCCGGTGCTCAGCCAATCGGAGAGGCAGAATGCGCAAGCTTGGGATTGG
196 CCCACAAAACGGCTGTGCCGGTGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCTCGGGATCGA
* * * * * * * **
31378830 CCCAGTCCCCTCTACGTGCTGTCGATCTTGCTACCGCAACCCTCTGTCTGGTCTGATCTTAGGCT
261 CCCAGTCCCCCCTACGTGCTATCGATCCTGCTACAGCAACCCTCGGTCTAGTCTGATCATAGAAT
31378895 GGGAATGAACTCCGTATG
326 GGGAATGAACTCCGTATG
* * *
31378913 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCATGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGT
* * * * *
31378978 CGGCCGGAGAGGCATAATGCGTAAGTCGGGGGTCAACCTGATCCCCCTCTGCGTGCTTTCGATCC
66 CGGCCGAAGAGACATAATGCGCAAGCCGGGGATCAACCTGATCCCCCTCTGCGTGC--T--AT--
* * **
31379043 CGTTACCGGTCCTGCTACCACAACCCTCGAT-TCGACTGGGGCTTAGACATGGAATAAACTCTGT
125 CGGT--C--T-C-GCTACCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATAAACTCCCT
* * * * * *
31379107 ATGCCTAAGCCAACCTACGAAATGAGCT-T-CCGGGTGCTCAGCCAGCCATAGAGGTAGAATGCG
183 ATGCCTAAGCCAACCCACAAAACG-GCTGTGCC-GGTGCTCAGCCAACCAGAGAGGCAGAATGCG
* **
31379170 CAAG-TCGAGGATCGACCC-GATCCCCCCTACGTGCTATTGATCCTGCTGGAGCAACCCTCGGTC
246 CAAGCTCG-GGATCGACCCAG-TCCCCCCTACGTGCTATCGATCCTGCTACAGCAACCCTCGGTC
31379233 TAGTCTGATCATAGAATGGGAATGAACT
309 TAGTCTGATCATAGAATGGGAATGAACT
31379261 TTGTATGCCT
Statistics
Matches: 282, Mismatches: 49, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
343 103 0.37
345 1 0.00
347 2 0.01
349 3 0.01
351 1 0.00
353 1 0.00
354 7 0.02
355 162 0.57
356 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGT
CGGCCGAAGAGACATAATGCGCAAGCCGGGGATCAACCTGATCCCCCTCTGCGTGCTATCGGTCT
CGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
CCCACAAAACGGCTGTGCCGGTGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCTCGGGATCGA
CCCAGTCCCCCCTACGTGCTATCGATCCTGCTACAGCAACCCTCGGTCTAGTCTGATCATAGAAT
GGGAATGAACTCCGTATG
Found at i:31379614 original size:159 final size:158
Alignment explanation
Indices: 31379349--31379648 Score: 379
Period size: 159 Copynumber: 1.9 Consensus size: 158
31379339 TCGCTGTCAC
* * *
31379349 AACCTTCGGTCCGGTTAGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCTTCGGTCCGGTTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA
* ** * * *
31379414 CGGGTGTACGGGCGCTCAACCGACCTGAGAGATAGAGTGCGCAAGCC-GAGGATCAGCCCGGTCC
66 CGAGCATACGGGCACTCAACCGACCTGAGAGACAGAATGCGCAAGCCAG-GGATCAGCCCGGTCC
*
31379478 CCCTCTGTGTGCTGCCAGTCTTGTTGCCAG
130 CCC-CTGCGTGCTGCCAGTCTTGTTGCCAG
* * *
31379508 AACCTTCGGTCCGGTTGGGGTTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAA
1 AACCTTCGGTCCGGTTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA
* * ** * * *
31379573 CGAGCATACGGGTACTCAGCCGGTC-GTAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCC
66 CGAGCATACGGGCACTCAACCGACCTG-AGAGACAGAATGCGCAAGCCAGGGATCAGCCCGGTCC
31379637 CCCCTGCGTGCT
130 CCCCTGCGTGCT
31379649 ATTGATCCTA
Statistics
Matches: 119, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
158 9 0.08
159 109 0.92
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
AACCTTCGGTCCGGTTAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA
CGAGCATACGGGCACTCAACCGACCTGAGAGACAGAATGCGCAAGCCAGGGATCAGCCCGGTCCC
CCCTGCGTGCTGCCAGTCTTGTTGCCAG
Found at i:31379715 original size:26 final size:26
Alignment explanation
Indices: 31379686--31379738 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31379676 CCGATCTAAT
31379686 CTTAGACT-GGCAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
**
31379712 CTTAGACTAGGGTTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31379738 C
1 C
31379739 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31380547 original size:26 final size:26
Alignment explanation
Indices: 31380503--31380555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31380493 CTGGTCTGAT
*
31380503 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGATTAAACTCCGTATG
31380529 CTTAGACTAGGGA-TAAACTCCGTATG
1 CTTAGACT-GGGATTAAACTCCGTATG
31380555 C
1 C
31380556 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGATTAAACTCCGTATG
Found at i:31380921 original size:26 final size:26
Alignment explanation
Indices: 31380883--31380935 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31380873 CCGGTCCGAT
31380883 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31380909 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
31380935 C
1 C
31380936 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31381608 original size:722 final size:719
Alignment explanation
Indices: 31379979--31381941 Score: 2062
Period size: 722 Copynumber: 2.7 Consensus size: 719
31379969 TGATCCCGCT
* * * * * * *
31379979 GCCACAACCCTCGGTCCGACTGTGGCGTAGATATGGAATGAACTCCCTATGCCTAAGCTAACCCA
1 GCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
31380044 TGAAACGAGTGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAG-TCGGGGATCGGCTC
66 CGAAATGAGCGTGCAGGCGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCT-AGGGATCGGCTC
* * * * * * *
31380108 GATGCACCCCTTGCATGCTATCGATCCTACTGTTGGTCCTGTTGCCACAACCCTCGGTCTGAT-T
130 GAT-C-CCCCATGCATGCTATCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGGTCT
* * * *
31380172 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGGCATAGAATGAACTCCGTATGCCTAAGCTA
193 -GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * *
31380237 ACCCACAAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGTTGGGGACCG
257 ACCCACGAAACGAGCGTATGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGGTGGGGACCG
* * * *
31380302 CTCCGATCCCCCCTACGTGCTCTCGATCCTACTGCAGCAACCCTCAGTTCAG-TCTGATCTTAGA
322 CT-CGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTC-GATCCGATCTGATCTTAGA
* * * * * *
31380366 TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAG-CGCTAAGTCAGAC
385 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACG-GTCGCTGAGCCAGCC
* * * ** * * *
31380430 AGAGAGACATAAT-C-AGCC------C-G--G-TCCCCCCTGCGTGCTGTCTATCTTACTACCGT
449 GGAGAGGCATAATGCAAGCCGGGGATCAGCTGATCCCTCCTGCGTGCTGTCGGTCCTGCTACCAT
* ** * * *
31380483 AACCCTCTGTCTGGTCTGATCTTAGACTGGGATTGAACTCCGTATGCTTAGACTAGGGATAAACT
514 AACCCTCTGTCCGGTCTGATCTTAGACTGACAGTGAACTACGTAAGCTTAGACTAGGGATAAACT
* * * * * *
31380548 CCGTATGCCTAAGTCAACCCACAAAATGAGCTTACGGGCAGCTTAGCCAATCAGAGAGGCCGATC
579 CCATATGCCTAAGTCAACCCACAAAACGAGCATACGGGCAGCTCAACCAACCAGAGAGGCCGATC
* * *
31380613 GAAGAGGCATAATACGTAAGCCAAGGATCAGCCCGATCCCTCTCTGCATGCTGTTGATACTGCTA
644 GAAGAGGCATAATACGTAAGCCAAGGATCAGCCCGATCCCTCTCTGCATGCTGCTAATACTACTA
31380678 CCGGTCCTGCA
709 CCGGTCCTGCA
* * * *
31380689 TCCACAACCCTC-AGTTCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCC
1 GCCACAACCCTCGA-TCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
31380753 ACGAAATGAGCTTAC-GGTGCTTAACCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACTC
65 ACGAAATGAGCGTGCAGGCGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTC
* * * * * * * *
31380817 AATCCCTCATGCTTACTGTCGATCCTGCTCCTGGTCCTGCTGTCACAACCCTCGATCCGGTCCGA
130 GATCCCCCATGCATGCTATCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGGTCTGA
* *
31380882 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
195 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * **
31380947 CACGAAAGGAGCGTTTGGGAAGCTCAGTCTATCGGAGAGGCAGAATGCACAAGGTGGGGATCAAC
260 CACGAAACGAGCGTATGGG-CGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGGTGGGGA-CCGC
* ** * *
31381012 TCGGT-CCCCCTGTGTGCTGTCGATCCTGCTACAGCAACCCTCGATCCGATCTGATCTTAGACTA
323 TCGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGATCCGATCTGATCTTAGACTG
*
31381076 GGAATGAACT-TCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGTCGCTGAGCCAGCCGGA
388 GGAATGAACTCT-GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGTCGCTGAGCCAGCCGGA
* *
31381140 GAGGCATAATGCGTAAGCCGGGGATCAGCCTGATCCCTCCTACGTGCTGTCGGTCCTGCTGCCAT
452 GAGGCATAATGC--AAGCCGGGGATCAG-CTGATCCCTCCTGCGTGCTGTCGGTCCTGCTACCAT
* *
31381205 AACCCTC-GATCCGGTCTGATCTTAGACTGACAGTGAACTACGTAAGCTTAGACTGGGGATGAAC
514 AACCCTCTG-TCCGGTCTGATCTTAGACTGACAGTGAACTACGTAAGCTTAGACTAGGGATAAAC
* * * * * *
31381269 TCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGG-TGCTCAATCGACC-GAAGAGGCCGG
578 TCCATATGCCTAAGTCAACCCACAAAACGAGCATACGGGCAGCTCAACCAACCAG-AGAGGCCGA
* *** ** *
31381332 TC-AGAGAGGCATAATGC-TCAAG-TTGGAGATCAGCTTGATCCC-CATCTGCATGCTGCTAATT
642 TCGA-AGAGGCATAATACGT-AAGCCAAG-GATCAGCCCGATCCCTC-TCTGCATGCTGCTAATA
* *
31381393 CTACTACCGGTTCTGCG
703 CTACTACCGGTCCTGCA
* *
31381410 GCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
31381475 GGAAATGAGCGTGCAGGCGTTTAGTCTACCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCG
66 CGAAATGAGCGTGCAGGCGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCG
* * * * * *
31381540 ATCCCCCCTACATGCTACCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCAATCCGGTCTGAT
131 ATCCCCCATGCATGCTATCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGGTCTGAT
* *
31381605 CTTAGACTTGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCC
196 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
31381670 ATGAAACGAGCATGTGGGCGCTCAGCCGATCAGAGAGGTAGAATGCGTAA-GTCGAGGACCGGTC
261 ACGAAACGAGCGTATGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGGT-GGGGACCGCTC
* * * * *
31381734 TGATCCCCCCTACGTGCTGTCGATCTTGCCGCTGCAACCCTC-AGTTCGATCCGATCTTAGACTG
325 -GATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGA-TCCGATCTGATCTTAGACTG
* * * * *
31381798 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT-GTTGAACAAGCCGGA
388 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTAC-GGTCGCTGAGCCAGCCGGA
* **
31381862 GAGGCATAATGCACAAGCTGGGGATCAGCTCGATCACCAT-CTGCGTGCTACCGGTCCTGCTACC
452 GAGGCATAATG--CAAGCCGGGGATCAGCT-GATC-CC-TCCTGCGTGCTGTCGGTCCTGCTACC
* *
31381926 ACAACCCTCAGTCCGG
512 ATAACCCTCTGTCCGG
31381942 CTAGGGCTTA
Statistics
Matches: 1020, Mismatches: 190, Indels: 73
0.80 0.15 0.06
Matches are distributed among these distances:
706 6 0.01
707 227 0.22
708 38 0.04
709 45 0.04
710 62 0.06
711 4 0.00
717 1 0.00
718 1 0.00
720 10 0.01
721 177 0.17
722 407 0.40
723 39 0.04
724 3 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (719 bp):
GCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAATGAGCGTGCAGGCGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCG
ATCCCCCATGCATGCTATCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTATGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGGTGGGGACCGCTCG
ATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGATCCGATCTGATCTTAGACTGGGA
ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGTCGCTGAGCCAGCCGGAGAGG
CATAATGCAAGCCGGGGATCAGCTGATCCCTCCTGCGTGCTGTCGGTCCTGCTACCATAACCCTC
TGTCCGGTCTGATCTTAGACTGACAGTGAACTACGTAAGCTTAGACTAGGGATAAACTCCATATG
CCTAAGTCAACCCACAAAACGAGCATACGGGCAGCTCAACCAACCAGAGAGGCCGATCGAAGAGG
CATAATACGTAAGCCAAGGATCAGCCCGATCCCTCTCTGCATGCTGCTAATACTACTACCGGTCC
TGCA
Found at i:31381634 original size:26 final size:26
Alignment explanation
Indices: 31381605--31381657 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31381595 CCGGTCTGAT
**
31381605 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
31381631 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
31381657 C
1 C
31381658 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:31382140 original size:26 final size:26
Alignment explanation
Indices: 31382104--31382156 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31382094 TTGGTCTGAT
31382104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31382130 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31382156 C
1 C
31382157 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31382700 original size:26 final size:26
Alignment explanation
Indices: 31382659--31382711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31382649 TTGATTCGAT
*
31382659 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31382685 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
31382711 C
1 C
31382712 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31382863 original size:556 final size:553
Alignment explanation
Indices: 31381798--31382904 Score: 1519
Period size: 553 Copynumber: 2.0 Consensus size: 553
31381788 TCTTAGACTG
* *** *
31381798 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAACAAGCCGGAG
1 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTGAACAAGCCGAAG
* * *
31381863 AGGCATAATGCACAAGCTGGGGATCAGCTCGATCACCATCTGCGTGCTACCGGTCCTGCTACCAC
66 AGGCATAATGCACAAGCTGGGGATCACCTCGATCACCATCTGCGTCCTACCAGTCCTGCTACCAC
* * *
31381928 AACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGTAA
131 AACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* ** * * * ** *
31381993 CGGGCGTGCGGGCACTCCGTCGGCGAAGAGGTAGAATGCGTAAGCCAGGGATCGACCCGGTCCCC
196 CCGAAGTGCGGACACTCCGTAGGCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCC
* *
31382058 CCTGCGTGCTATTGATCCTACTACCGCAACCCTGGTTTGGTCTGATCTTAGACTGGGAATGAACT
261 CCTGCGTGCTATCGATCCTACTACCGCAACCCTGATTTGGTCTGATCTTAGACTGGGAATGAACT
* *
31382123 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCACAAAATGAGCATGCAAACG
326 CCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCACAAAACGAGCATGCAAACG
* *
31382188 CTCAGCCGACTAGAGAGGCAGGATGTGCAAGTCAGGGATCGAACGGGTGGTAGGTGGGTTCAAGC
391 CTCAGCCGACCAGAGAGGCAGGATGTGCAAGTCAGGGATCGAACCGGTGGTAGGTGGGTTCAAGC
* *
31382253 ACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
456 ACATCTTCATATTTCTACCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
*
31382318 TATGCCTTCATGTGAGGTTTCGTGGCAAGACAT
521 TATGCCTTCATGTGAAGTTTCGTGGCAAGACAT
* * *
31382351 GGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTGAGCCAGTCGAA
1 GGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTGAACAAGCCGAA
* * * * *
31382415 GAGGCATAATGCGCAAG-TCGGGGATCGACCT-GATCGCCATCTGTGTCCTGCCAGT-CTCGCTG
65 GAGGCATAATGCACAAGCT-GGGGATC-ACCTCGATCACCATCTGCGTCCTACCAGTCCT-GCTA
* * *
31382477 CCACAACCTTC-GATCCAGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
127 CCACAACCCTCAG-TCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
31382541 CGAAACCGAAGTGTGGACGCTCAAC-TAGTCGGAGAGGCAGAATGCACAAGTC-GAGGATCGCCC
191 CGAAACCGAAGTGCGGACACTC--CGTAGGCGAAGAGGCAGAATGCACAAGCCAG-GGATCGACC
* * * *
31382604 CGATCCCCCCTGCGTGTTGTCGATCCTACTACCGTAACCCTCGATTTGAT-TCGATCTTAGACTG
253 CGATCCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCT-GATTTGGTCT-GATCTTAGACTG
* * *
31382668 GGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCGACCCACGAAACGA
316 GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTC-AACCACAAAACGA
** * *
31382733 GCATGCGGATGCTCAGCCGACCAGAGAGGCAGGATGTGCAAGTCGGGGATCGAACCGGTGGTAGG
380 GCATGCAAACGCTCAGCCGACCAGAGAGGCAGGATGTGCAAGTCAGGGATCGAACCGGTGGTAGG
* * *
31382798 TGGGTTCAAGCACATCTTCATATTTCTGCCTTGATAATGCCATTTTTATGGCTTGTAAATTCATA
445 TGGGTTCAAGCACATCTTCATATTTCTACCATGACAATGCCATTTTTATGGCTTGTAAATTCATA
31382863 CAATGGTCCCCTATGCCTTCATGTGAAGTTTCGTGGCAAGAC
510 CAATGGTCCCCTATGCCTTCATGTGAAGTTTCGTGGCAAGAC
31382905 GACCCGTTTT
Statistics
Matches: 483, Mismatches: 60, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
552 5 0.01
553 172 0.36
554 68 0.14
555 68 0.14
556 170 0.35
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (553 bp):
GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTGAACAAGCCGAAG
AGGCATAATGCACAAGCTGGGGATCACCTCGATCACCATCTGCGTCCTACCAGTCCTGCTACCAC
AACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CCGAAGTGCGGACACTCCGTAGGCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCC
CCTGCGTGCTATCGATCCTACTACCGCAACCCTGATTTGGTCTGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCACAAAACGAGCATGCAAACG
CTCAGCCGACCAGAGAGGCAGGATGTGCAAGTCAGGGATCGAACCGGTGGTAGGTGGGTTCAAGC
ACATCTTCATATTTCTACCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
TATGCCTTCATGTGAAGTTTCGTGGCAAGACAT
Found at i:31383581 original size:26 final size:26
Alignment explanation
Indices: 31383552--31383604 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31383542 CTGATTCGAT
*
31383552 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
31383578 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
31383604 C
1 C
31383605 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:31383983 original size:26 final size:26
Alignment explanation
Indices: 31383932--31383984 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31383922 CTGGTCCAAT
*
31383932 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31383958 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31383984 C
1 C
31383985 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31384544 original size:159 final size:158
Alignment explanation
Indices: 31383957--31384562 Score: 484
Period size: 159 Copynumber: 3.8 Consensus size: 158
31383947 AACTCTATAT
* * * * **
31383957 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTACGGGCGCTCAG
** * * ** * * * * * *
31384022 CCGGTCAGAGAGGCAGAATGCTTAAGCTGGGGATTGACCCGGTCTCCCCTACGTGCTGTCGATCC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
* ** * * * * *
31384087 TGCTATCGCAACCCTCGGTCTG-GTCCGA
131 CGCTGCCACAACCCTCAGTCTGACT-GGG
* ** ** * * * * *
31384115 TCTTAGAC-TGGGAATGAACTCAATATGCCTAAATCAACTCACGAAACGAGCGTGCGGGCCCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTACGGGCGCTCA
* * * * * ** ** * * **
31384179 TCC-AGTCGGAGAGGCATAATGTGCAAGTCGGGGATCGACTTGATCCCTATCTGCTTGTTACCGA
65 GCCGA-CCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCC-CCCTGCATGCTGTCGA
* *
31384243 TTCCACTGCCACAACCCTCAGTCTGACTGGG
128 TCCCGCTGCCACAACCCTCAGTCTGACTGGG
* * * *
31384274 GCTTAGACATGGAATGAACTCCCTATGCCTCAGCTAACCCACGAAAGGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTACGGGCGCTCAG
* ** * * * *
31384339 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCTTCTGCATGCTGTCGATC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCC-CCTGCATGCTGTCGATC
* *
31384404 CCGCTGCCACAACCCTCGGTCTGGCTGGG
130 CCGCTGCCACAACCCTCAGTCTGACTGGG
* * *
31384433 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGG-GCGTACGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGAGCGTACGGGCGCTCA
* * *
31384497 GCCGACCGGAGAGGCAAAATTCGCAAGCTGGGGATC-AGCCCGATCCCCCCTGCGTGCTGTCGAT
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCATGCTGTCGAT
31384561 CC
129 CC
31384563 TGCTATCGCA
Statistics
Matches: 351, Mismatches: 88, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 100 0.28
159 246 0.70
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
CGCTGCCACAACCCTCAGTCTGACTGGG
Found at i:31384633 original size:26 final size:26
Alignment explanation
Indices: 31384592--31384643 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31384582 CCAATCTGAT
31384592 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
*
31384618 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTATGTATG
31384644 TCGAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:31385936 original size:26 final size:26
Alignment explanation
Indices: 31385897--31385949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31385887 CCGGTCCAAT
* *
31385897 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
31385923 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
31385949 C
1 C
31385950 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:31386304 original size:26 final size:26
Alignment explanation
Indices: 31386265--31386316 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31386255 CTGATCTAAT
31386265 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
31386291 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
31386317 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:31386769 original size:26 final size:26
Alignment explanation
Indices: 31386733--31386785 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31386723 CCAATCCGAT
*
31386733 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31386759 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31386785 C
1 C
31386786 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31387051 original size:157 final size:158
Alignment explanation
Indices: 31386759--31387719 Score: 783
Period size: 157 Copynumber: 6.2 Consensus size: 158
31386749 ACTCTGTATG
* * * * * *
31386759 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCATGAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * * *
31386824 CGATCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCGGTCCCC-CTGCGTGCTGTCGTTCCT
66 CGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCGATCCT
*
31386888 GTTGCCACAACCCTCGGTCC-AGTCTGAT
131 GCTGCCACAACCCTCGGTCCGA-TCTGAT
* *
31386916 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGATCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * *
31386981 CGGCCGAAGAGGCATAATGGGCAAGTCGGGGATCGACCCAGTCCCCT-TGCGTGCTACCGATCCC
66 CGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCGATCCT
* * **
31387045 GCTGCCACAACCCTCGATCCGGT-TGGGG
131 GCTGCCACAACCCTCGGTCCGATCT-GAT
* * * * *
31387073 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGAAACG-GGGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * *
31387136 TCGACCTG-AGAGGC-TGAATGCACAAG-CCGGGATC-AGCCC-GATCCCCTCCTGCGTGCTGCC
65 CCGACC-GAAGAGGCAT-AATGCGCAAGTCGGGGATCGA-CCCAG-TCCCCT-CTGCGTGCTGCC
* *
31387196 GATCTTGCTGCCCCAACCCTCGGTCC-AGTCTGAT
125 GATCCTGCTGCCACAACCCTCGGTCCGA-TCTGAT
** * * * * * * *
31387230 CTTAGACTGGGAATGAACTTTGTATG-CTTAG---A--CATGGAATGAAC-TCCGTATGC-CTAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG--GGCGCTGA
* * * * * * * * **
31387287 GCCAACCCACGAAGC--GA-GCG--TG-CGGGGATTGGCCCAGTCCCCTCTGCGTGCTATCGATC
64 GCCGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCGATC
* * *
31387346 CTGCTACTACAACCCTCAGTCCGATCTGAT
129 CTGCTGCCACAACCCTCGGTCCGATCTGAT
* * * *
31387376 CTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCACGAAATGAGCGTGCGGTCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * * * * * *
31387441 CGGCCGGAGAGGCATAATACGTAAGCCGGGGATCGATCCAGTCCCCCTCTGCGTGCTGTCGGTCC
66 CGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGT-CCCCTCTGCGTGCTGCCGATCC
* * **
31387506 CGCTGCCACAACCCTCTGTCCGAT-TGGGG
130 TGCTGCCACAACCCTCGGTCCGATCT-GAT
* * ***
31387535 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGATAGCTCG-
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT-GA
* * * * * * * * * * *
31387598 GCCGATCGGAGATGCAAAATGTGTAAGCCAGGGATCGACCCAGTCCCCCCTGCATGCTGCCAATC
64 GCCGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCGATC
* *
31387663 CTGCTGCCGCAACCCTCCGTCCGATCTGAT
129 CTGCTGCCACAACCCTCGGTCCGATCTGAT
*
31387693 CTTAAACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
31387720 TTGGACATTG
Statistics
Matches: 636, Mismatches: 128, Indels: 79
0.75 0.15 0.09
Matches are distributed among these distances:
146 62 0.10
147 20 0.03
148 1 0.00
149 2 0.00
150 2 0.00
151 10 0.02
152 32 0.05
153 6 0.01
154 3 0.00
155 19 0.03
156 37 0.06
157 231 0.36
158 79 0.12
159 130 0.20
160 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
CGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGGTCCGATCTGAT
Found at i:31387280 original size:26 final size:26
Alignment explanation
Indices: 31387230--31387282 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31387220 CCAGTCTGAT
**
31387230 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31387256 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31387282 C
1 C
31387283 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31387624 original size:159 final size:159
Alignment explanation
Indices: 31387319--31387719 Score: 479
Period size: 159 Copynumber: 2.5 Consensus size: 159
31387309 CGGGGATTGG
* * *
31387319 CCCAGT-CCCCTCTGCGTGCTATCGATCCTGCTACTACAACCCTCAGTCCGATCTGATCTTAGAC
1 CCCAGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGATCTGATCTTAGAC
* * * * * * *
31387383 TGGGAATGAACTCTGTATGCCTAAATCAACCCACGAAATGAGCGTGCGGTCGTTGAGCCGGCCGG
66 TGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGATAGTCGAGCCGACCGG
* *
31387448 AGAGGCATAATACGTAAGCCGGGGATCGA
131 AGAGGCAAAATACGTAAGCCAGGGATCGA
* * * * **
31387477 TCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCTGTCCGAT-TGGGGCTTAGA
1 CCCAGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGATCT-GATCTTAGA
* *
31387541 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGATAGCTCG-GCCGAT
65 C-TGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGATAG-TCGAGCCGAC
* **
31387604 CGGAGATGCAAAATGTGTAAGCCAGGGATCGA
128 CGGAGAGGCAAAATACGTAAGCCAGGGATCGA
* * * * * *
31387636 CCCAGTCCCCC-CTGCATGCTGCCAATCCTGCTGCCGCAACCCTCCGTCCGATCTGATCTTAAAC
1 CCCAGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGATCTGATCTTAGAC
31387700 TGGGAATGAACTCCGTATGC
66 TGGGAATGAACTCCGTATGC
31387720 TTGGACATTG
Statistics
Matches: 203, Mismatches: 34, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
157 1 0.00
158 65 0.32
159 134 0.66
160 3 0.01
ACGTcount: A:0.22, C:0.32, G:0.25, T:0.21
Consensus pattern (159 bp):
CCCAGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGATCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGATAGTCGAGCCGACCGG
AGAGGCAAAATACGTAAGCCAGGGATCGA
Found at i:31393902 original size:26 final size:26
Alignment explanation
Indices: 31393873--31393925 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
31393863 CCGATCCAAT
31393873 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
31393899 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
31393925 C
1 C
31393926 CTAAGTCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:31395291 original size:26 final size:26
Alignment explanation
Indices: 31395262--31395314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31395252 CCAATCCGAT
*
31395262 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31395288 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31395314 C
1 C
31395315 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31397234 original size:26 final size:26
Alignment explanation
Indices: 31397198--31397250 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31397188 CCGGTCCGAT
* *
31397198 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31397224 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31397250 C
1 C
31397251 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31398286 original size:26 final size:26
Alignment explanation
Indices: 31398235--31398287 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31398225 CCAGTCCAAT
*
31398235 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
31398261 CTTAGATTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
31398287 C
1 C
31398288 GTAAGTCAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:31398941 original size:157 final size:156
Alignment explanation
Indices: 31398640--31399138 Score: 487
Period size: 157 Copynumber: 3.2 Consensus size: 156
31398630 AACTCCGTAT
31398640 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
31398705 CCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCTT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTGCGTGCTGCCGATCCC
***
31398770 GCTATTGCAACCCTCGGTCTGGTCT-GA
131 GCTA-TGCAACCCTCGGTC-CAACTAGA
* * * * * *
31398797 TCTTCGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
31398861 GCCGGCCAGG-GAGGCATAATGTGCAAGCCGGGGATCAG-CC-GTCCCCCTTTGTGTGCTGCCGG
65 GCCGACC-GGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCC--TGCGTGCTGCCGA
*
31398923 TCCCGC-A-GCCATAGCCCTCGGTCCAACTAGG
127 TCCCGCTATG-CA-A-CCCTCGGTCCAACTAGA
*
31398954 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * ** *
31399019 CCGATC-GAAAGGCAGAATGTGCAAGTTGGGGATTGGCCCGGTCCCCCCTGCGTGCGGCCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGT-CCCCCTGCGTGCTGCCGATCC
* * * *
31399083 TGCTGCTACAACCCTTGGTCCAATCT-GA
130 CGCT-ATGCAACCCTCGGTCCAA-CTAGA
*
31399111 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31399139 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 46, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
154 1 0.00
155 10 0.04
156 30 0.11
157 222 0.80
158 8 0.03
159 7 0.03
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTGCGTGCTGCCGATCCC
GCTATGCAACCCTCGGTCCAACTAGA
Found at i:31399148 original size:26 final size:26
Alignment explanation
Indices: 31399112--31399164 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31399102 CCAATCTGAT
31399112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31399138 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31399164 C
1 C
31399165 GTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31407144 original size:26 final size:26
Alignment explanation
Indices: 31407092--31407144 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31407082 CCAGTCCGAT
*
31407092 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
31407118 CTTAGACTAGGG-ATGAACTCCGCATG
1 CTTAGACT-GGGAATGAACTCCACATG
31407144 C
1 C
31407145 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:31407838 original size:26 final size:26
Alignment explanation
Indices: 31407800--31407871 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
31407790 CCAGTTTGAT
*
31407800 CTTAGAC-TGGGAACGAACTCTGAATG
1 CTTAGACAT-GGAACAAACTCTGAATG
*
31407826 CTTAGACATGGAATAAACTCTGAATG
1 CTTAGACATGGAACAAACTCTGAATG
*
31407852 CTTAGACATGGAATAAACTC
1 CTTAGACATGGAACAAACTC
31407872 CGTATGCCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAACAAACTCTGAATG
Found at i:31407878 original size:26 final size:26
Alignment explanation
Indices: 31407815--31407878 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
31407805 ACTGGGAACG
*
31407815 AACTCTGAATGCTTAGACATGGAATA
1 AACTCCGAATGCTTAGACATGGAATA
*
31407841 AACTCTGAATGCTTAGACATGGAATA
1 AACTCCGAATGCTTAGACATGGAATA
*
31407867 AACTCCGTATGC
1 AACTCCGAATGC
31407879 CTAAGCCAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (26 bp):
AACTCCGAATGCTTAGACATGGAATA
Found at i:31408409 original size:26 final size:26
Alignment explanation
Indices: 31408380--31408431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31408370 CGATCCGATA
*
31408380 TTAGAC-TGGGAATTAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
31408406 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
31408432 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:31409989 original size:159 final size:157
Alignment explanation
Indices: 31409617--31410069 Score: 457
Period size: 159 Copynumber: 2.9 Consensus size: 157
31409607 AACTCCGTAT
* *
31409617 GCTTAAACATGGAATGAATTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
31409682 CCGACCGGAGAGGCAGAATAAGCAAGCCAGGGATCAGCCCAGTCCCCC-CTACATGCTATCGATC
65 CCG-CCGAAGAGGCAGAATGAGCAAGTCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTATCGGTC
* ** * * * *
31409746 CTGCTTTCACAGCCCTCAGTTCGGTTCGA
129 CTACTGCCACAACCCTCAGTCCGGCTAGA
* * * * * * * *
31409775 TCTTAGA-TTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGCGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
31409839 GCCAGCCGAAGAGGCATAATGTGTAAGTCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGT
64 GCC-GCCGAAGAGGCAGAATGAGCAAGTCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTATCGGT
* *
31409904 CCCACTGCCACAACCCTCAGTCCGGCTAGG
128 CCTACTGCCACAACCCTCAGTCCGGCTAGA
* * * *
31409934 GCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGGAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
31409999 CCGGCCGAAGAGGCAGAATGCGCAAGTC-GAGGATC-GACCCGGTCCCTCT-TGCGTGCTGTCGG
65 CC-GCCGAAGAGGCAGAATGAGCAAGTCAG-GGATCAG-CCCAGTCCCCCTCTGCGTGCTATCGG
31410061 TCCTACTGC
127 TCCTACTGC
31410070 TCATCCTACT
Statistics
Matches: 238, Mismatches: 49, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 113 0.47
159 123 0.52
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGCCGAAGAGGCAGAATGAGCAAGTCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTATCGGTCCT
ACTGCCACAACCCTCAGTCCGGCTAGA
Found at i:31410143 original size:26 final size:26
Alignment explanation
Indices: 31410105--31410157 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31410095 CCGGCCCGAT
31410105 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31410131 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31410157 C
1 C
31410158 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31410284 original size:196 final size:194
Alignment explanation
Indices: 31409934--31410461 Score: 619
Period size: 196 Copynumber: 2.7 Consensus size: 194
31409924 TCCGGCTAGG
* * * * * * *
31409934 GCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGGAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * * * * *
31409999 CCGGC-CGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCTCTTGCGTGCTGTCGGTC
66 CC-GCTAG-AGAGGTAGAATGCGCAAGTCG-GGATCGACTCGGTCCCCCCTGCGTGCTGTCGATC
* ** * * *
31410063 CTACTGCTCATCCTACTGTCGCAACCCTCGATCCGGCCCGATCTTAGACTGGGAATGAACTCCAT
128 CTGCTGCTCATCCTACTACCGCAACCCTCGATCCGACCCAATCTTAGACTAGGAATGAACTCCAT
31410128 AT
193 AT
* * *
31410130 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATAAAACGAGCGTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
*
31410195 CCGACTAGAGAGGTAGAATGCGCAAGTCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCG-CTAGAGAGGTAGAATGCGCAAGTC-GGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCC
** * * ***
31410260 TGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTAGGAATGAACTTTGTA
129 TGCTGCTCATCCTACTACCGCAACCCTCGATCCGACCCAATCTTAGACTAGGAATGAACTCCATA
31410325 T
194 T
* *
31410326 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTGC-AGGGGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGA-GCGCTCA
* * * *
31410390 GCCGGTCGGAGAGGTAGGAATGCGCAAGCCGGGGACCGACTCGGTCCCCCCCTGCGTGCTGTCGA
65 GCCGCT-AGAGAGGTA-GAATGCGCAAGTC-GGGATCGACTCGGT-CCCCCCTGCGTGCTGTCGA
*
31410455 TCTTGCT
126 TCCTGCT
31410462 ACCGCAAACC
Statistics
Matches: 283, Mismatches: 42, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
195 3 0.01
196 229 0.81
197 26 0.09
198 25 0.09
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
CCGCTAGAGAGGTAGAATGCGCAAGTCGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCTCATCCTACTACCGCAACCCTCGATCCGACCCAATCTTAGACTAGGAATGAACTCCATAT
Found at i:31410351 original size:26 final size:26
Alignment explanation
Indices: 31410301--31410353 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31410291 CCGATCCAAT
**
31410301 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31410327 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
31410353 C
1 C
31410354 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31411056 original size:26 final size:26
Alignment explanation
Indices: 31411018--31411070 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31411008 CTGGTCTGAT
31411018 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31411044 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31411070 C
1 C
31411071 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31411074 original size:717 final size:704
Alignment explanation
Indices: 31409593--31411257 Score: 1771
Period size: 717 Copynumber: 2.3 Consensus size: 704
31409583 TCTCAAAATT
* *
31409593 TTAGACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAATTCCGTATGCCTAA-GCTAACCC
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGC-AACCC
** ** *
31409657 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATAAGCAAGCCAGGGATCAGCCC
65 ACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCC
* * * * ** * * *
31409722 AGT-CCCCCCTACATGCTATCGATCCTGCTTTCACAGCCCTCAGTTCGGT-TCGATCTTAGATTG
130 GGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTCGGTCT-GATCTTAGACTG
* * * *
31409785 GGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGCGTGTGCGGGCACTGAGCCAGCCGAAG
194 GGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTGAGCCAGCCGAAG
* * * * *
31409850 AGGCATAATGTGTAAGTCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGTCCCACTGCCAC
258 AGGAATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCTACATGCTACCGGTCCCACTGCCAC
* *
31409915 AACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGGAA
323 AACCCTCAGTCCGGATAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGAAA
* * * * * ** *
31409980 CGGGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCC
388 CGGGCATACGAGAGCTCAGCCGACCGAAGAGGCAGAATGCGCAAACCGAGGATCGACCCAGTCCC
*
31410045 TCTTGCGTGCTGTCGGTCCTACTGCTCATCCTACTGTCGCAACCCTCGATCCGGCCCGATCTTAG
453 TCTTACG-GCTGTCGG-CC-ACTG--CATCCTACTGTCGCAACCCTCGATCCGGCCCGATCTTAG
* *
31410110 ACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATAAA
513 ACTGGGAATGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAA
* * * * *
31410175 ACGAGCGTGCGAGCGCTCAACCGACTAGAGAGGTAGAATGCGCAAGTCAGGGATCGGCTCGGTCC
578 ACGAGCGTGCGAGCGCTCAACCGACTAGAGAGGCAAAAAGCGCAAGTCAGGGATCAGCTCGATCC
*
31410240 CCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGATCCAATC
643 CCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCATCGATCCGATCCAATC
* **
31410302 TTAGACTAGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCA
* * *
31410367 TGAAACGAGCGTGCAGGG-GCTCAGCCGGTCGGAGAGGTAGGAATGCGCAAGCCGGGGA-CCGAC
66 CGAAACGAGCGTGC-GGGCGCTCAGCCGGTCGGAGAGGCA-GAATGCGCAAGCCGGGGATCAG-C
* *
31410430 TCGGTCCCCCCCTGCGTGCTGTCGATCTTGCTACCGCAAACCCTCAGTTC-GTCTGATCTTAGA-
128 CCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGC-AACCCTCAGTTCGGTCTGATCTTAGAC
* * * * *
31410493 TGGGAATGAACATCGTATGCCTAAGTCAACCCACGAAATGAG-GTGCGAGCGCTGAGGTC-GGCT
192 TGGGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTGA-GCCAGCCG
* * *
31410556 AAGAGGAATAATGCGCAGAGTC-GAGGATC-GCTCGGTCCCCCTCTACATGCTACCGGTCCCGCT
255 AAGAGGAATAATGCGCA-AGTCAG-GGATCAGCCCAGTCCCCCTCTACATGCTACCGGTCCCACT
* * * * * * *
31410619 GCCACAACCCTCGGTGCTGAT-GGGGTTAGTCA-GGAATTGAACTGCCCGTATGCCTAAGCCAAC
318 GCCACAACCCTCAGTCCGGATAGGGCTTAGACATGGAA-TGAAC-ACCC-TATGCCTAAGCAAAC
* * * * * *
31410682 CGACGAAACGGGCATACGAGAGCTCAGCTGACCGGAGAGGCAGAATGTGCAAACCGGGGATCGGC
380 CCACGAAACGGGCATACGAGAGCTCAGCCGACCGAAGAGGCAGAATGCGCAAACCGAGGATCGAC
* *
31410747 CCAGTCCC-CTCTAC-G-TG-CGG-C-C-G-ATCCTACTGTCGCAACCCT-GGTCCGGTCCGATC
445 CCAGTCCCTCT-TACGGCTGTCGGCCACTGCATCCTACTGTCGCAACCCTCGATCCGGCCCGATC
* * * * *
31410803 TTAGACTGGGAGATGAA-TCCCATAGTGCTTAGACGGGGGATGAACTCCGTTTGCCTATGTCAAC
509 TTAGACTGGGA-ATGAACT-CCATA-TGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
31410867 CCATGGAATACGCAGGCGTTACGGGCACGTCAGTCATCGGAGAGGCCGA-TCGGAGAGGCAAAAA
571 CCAT--AAAACG-A-GCG-T--GCG-A-G-C-G-C-TC--A-A--CCGACT-AGAGAGGCAAAAA
* * * *
31410931 GTGCAAG-CTGGGGATCAGCTCGATGCCCCCTGCGTGCTGTTGATCCTGCTGCTGGTCCTGCTAC
617 GCGCAAGTC-AGGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTAC
* * * * **
31410995 CGTAACCATTGATCTGGTCTGATC
681 CGCAACCATCGATCCGATCCAATC
* *
31411019 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCA
* * * * *
31411084 CAAAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGTATCAGCCCG
66 CGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCG
* * * * * *
31411149 ATCCCCCCCAGCGTGCTGTCGATCCTACTGCCGCAACCCTC-GGTCTGATCTGATCTTAGACTGG
131 GTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTC-GGTCTGATCTTAGACTGG
* *
31411213 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
195 GAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
31411258 GGCAGGATGC
Statistics
Matches: 796, Mismatches: 116, Indels: 79
0.80 0.12 0.08
Matches are distributed among these distances:
697 24 0.03
698 29 0.04
699 36 0.05
701 6 0.01
702 2 0.00
703 3 0.00
704 2 0.00
706 5 0.01
707 7 0.01
708 16 0.02
709 170 0.21
710 148 0.19
711 36 0.05
712 14 0.02
714 4 0.01
715 8 0.01
716 66 0.08
717 215 0.27
718 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (704 bp):
TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCG
GTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGG
AATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTGAGCCAGCCGAAGAGG
AATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCTACATGCTACCGGTCCCACTGCCACAAC
CCTCAGTCCGGATAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCAAACCCACGAAACGG
GCATACGAGAGCTCAGCCGACCGAAGAGGCAGAATGCGCAAACCGAGGATCGACCCAGTCCCTCT
TACGGCTGTCGGCCACTGCATCCTACTGTCGCAACCCTCGATCCGGCCCGATCTTAGACTGGGAA
TGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGT
GCGAGCGCTCAACCGACTAGAGAGGCAAAAAGCGCAAGTCAGGGATCAGCTCGATCCCCCCTGCG
TGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCATCGATCCGATCCAATC
Found at i:31411322 original size:26 final size:26
Alignment explanation
Indices: 31411284--31411335 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31411274 CGAGGATGAT
*
31411284 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31411310 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31411336 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31411488 original size:266 final size:266
Alignment explanation
Indices: 31411014--31411506 Score: 722
Period size: 266 Copynumber: 1.9 Consensus size: 266
31411004 TGATCTGGTC
*
31411014 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCA
* ** * *
31411079 AACCACAAAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGTATCA
66 AACCACAAAACGAGCATACACGCGCTCAGTCGGTCGGAGAGGCAGAATGCCCAAGCCGGGTATCA
* * *
31411144 GCCCGATCCCCCCCAGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGATCTGATCTTAGA
131 GCCCGATCCCCCCCAGCATGCTGTCGATCCTACTGCCGCAACCCTCGATCTGATCCGATCTTAGA
*
31411209 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAGGATGCGCTAGT
196 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAGGATGCGCTAGT
31411274 CGAGGA
261 CGAGGA
*
31411280 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCA
* ** * * * *
31411345 ACCCATGAAACGAGCATGCACGTGCTCAGTCGGTTGGAGAGGTAGAATGCCCAAGCCGAGG-ATC
66 AACCACAAAACGAGCATACACGCGCTCAGTCGGTCGGAGAGGCAGAATGCCCAAGCCG-GGTATC
* * * *
31411409 AGCCC-AGTCCCCCCTA-CATGCTGTCGATCCCTACTGTCGCAACCCTCGATTTGGTCCGATCTT
130 AGCCCGA-TCCCCCCCAGCATGCTGTCGAT-CCTACTGCCGCAACCCTCGATCTGATCCGATCTT
* *
31411472 AGATTGGGAATGAACTCTGTATGCCTAAGTCAACC
193 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
31411507 AACAAAATGA
Statistics
Matches: 200, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
265 12 0.06
266 186 0.93
267 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (266 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCA
AACCACAAAACGAGCATACACGCGCTCAGTCGGTCGGAGAGGCAGAATGCCCAAGCCGGGTATCA
GCCCGATCCCCCCCAGCATGCTGTCGATCCTACTGCCGCAACCCTCGATCTGATCCGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAGGATGCGCTAGT
CGAGGA
Found at i:31411816 original size:26 final size:26
Alignment explanation
Indices: 31411787--31411838 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
31411777 CGGTCTGATT
31411787 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
31411813 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
31411839 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:31413068 original size:26 final size:26
Alignment explanation
Indices: 31413032--31413087 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
31413022 CCGGTCCGAT
*
31413032 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31413058 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31413084 CTTA
1 CTTA
31413088 AGTCAACCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31413429 original size:26 final size:26
Alignment explanation
Indices: 31413400--31413452 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31413390 TCGGTCTGAT
31413400 CTTAGAC-TAGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
31413426 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
31413452 C
1 C
31413453 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:31414530 original size:873 final size:852
Alignment explanation
Indices: 31412695--31414764 Score: 2018
Period size: 873 Copynumber: 2.4 Consensus size: 852
31412685 GATCAGCCAT
* * * * * * * * * *
31412695 AACCCTCGGTCCGATCCGATCTTAGATTGGTAATGAACTTCGTATGCATAAGTCAACCCGCGAAA
1 AACCCTCAGTCTGGTCCGATCCTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
* * * * * * * * * *
31412760 CGAACGTGCGGGCACTGAGCC-ACCTGAAGAGGCACAATGCGCAAGCCGGGGATCTGCTTGGTCC
66 AGAGCGTACGGGCGCAGAGCCGATC-GAAGAGGCATAATGCACAAGCCGGGGATCAGCCTGGT-C
* * * *
31412824 CCCTCTACGTGCTACTAGTCCCGCTGCCACAGCCCTCGGTCTGGCTGGGGCTTAGACATGGAATG
129 CCCTCTGCGTGCTACCAGTCCCGCTGCCACAACCCTCGATCTGGCT--GGCTTAGACATGGAATG
* * *
31412889 AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAACCGGTCAGAGAGGT-A
192 AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGA-GTCA
* ** * * ** * *
31412953 GAATGCATAAGCCGGGGATCAACCCGCTCCATCCTGCATGCTGTCGATCCTGCTGCCGCAACCCT
256 GAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCT
* *
31413018 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTAT
321 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAA
* * * ** *
31413083 GCTTAAGTCAACCCCACGAAACGAGCGTGTGGGTGCTCAGCCGATCGGAGAGGCATAATGCGTAA
386 GCCTAAGTCAACCCCAAGAAACGAGCATACGGGCGCTCAGCCGATCGGAGAGGCATAATGCGTAA
* * ** * * *
31413148 GCCAGGGATTAGCCCGGTACCCCTCTGCATGTTGTCAATCCGGCTGCCAGTCCCGCTGCCACAGC
451 GCCAGGGATCAGCCCGATACCCCTCTGCATGCGGTCAATCCAGCTACCAGTCCCGCTGCCACAAC
* * *
31413213 ACTCGATCCGGCTGGGCCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGA
516 ACTCGATCCGACTGGGCCTTAGAAATGGAATGAACTCCGTATGCCT--------------AAC-A
* * * * ** *
31413278 GCGTGTGGGTGCTCAGCTGGCCGGAGAGAGAGAATGCACAAGCCTGGGATCGGCCCGATCCCCTC
566 GC--GTGGGTGATCAACCGACAAGAGAGAGAGAATGCACAAGCCTGGGATCGGCCCGATCCCCCC
* *
31413343 AGCGTGCTGCCAATCCTGCTGCTGGTCCTACTATCGCAACCCTCGGTTCGGTCTGATCTTAGACT
629 AGCGTGCTACCAATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTTCGGTCTGATCTTAGACT
* * * * *
31413408 AGGAATGAACTTCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGGCAACCCACGAAACG
694 AGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-
* * * *
31413473 AGTGTGCGTGCGGGCACTCAGCCAGTCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTC
758 AGTGAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGGTC
* * * **
31413538 CCCCTTACGTGCTGTCGATGCTGCTACCGT
823 CCCCCTACGTGCTATCGATCCTGCTACCAC
*
31413568 AACCCTCAGTCTGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCAGTCTGGTCCGATCCTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
* * * * **
31413633 CGAGCGTACGGGCGCTGAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCGGCCCAGTCCT
66 AGAGCGTACGGGCGCAGAGCCGATCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCTGGTCC-
* *
31413698 CCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCGATCCGGCTCAGGCTTAGACATGGAATGA
130 CCTCTGCGTGCTACCAGTCCCGCTGCCACAACCCTCGATCTGGCT--GGCTTAGACATGGAATGA
* * * *
31413763 ACCCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGCCGGCCGGAGAGTCAAA
193 ACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGTCAGA
* * * * *
31413828 ATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCAATCTTGCTGTCACAGCCTTCG
258 ATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCG
* * * *
31413893 GTCTGGTCTGATCTTCGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTAAGC
323 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAAGC
*
31413958 CTAAGTCAA-CCCAAGAAATGAGCATACGGGCGCTCAGTCGACCGAAAAGGTCAGCCGGAGAGGC
388 CTAAGTCAACCCCAAGAAACGAGCATACGGGCGCTCA---G-CCG---A--T----CGGAGAGGC
* * * * * *
31414022 ATAATGCGTAAGTCGGGGATCAGCCCGAT-CCCCTCTGCGTGCGG-CTGATCCAGTTACCGGTCC
440 ATAATGCGTAAGCCAGGGATCAGCCCGATACCCCTCTGCATGCGGTC-AATCCAGCTACCAGTCC
* * *
31414085 TGCTGCCACAACCCTCGATCCGACTGGGGCTTAGAAATGGAATGAACTCCGTATGCCT-A-AGC-
504 CGCTGCCACAACACTCGATCCGACTGGGCCTTAGAAATGGAATGAACTCCGTATGCCTAACAGCG
* * *
31414147 TGGG-GATCAACCGACAAGAGAG-GCAGAATGCGCAAG-CTAGGGATCGGCCCGGTCCCCCCTTG
569 TGGGTGATCAACCGACAAGAGAGAG-AGAATGCACAAGCCT-GGGATCGGCCCGATCCCCCC-AG
* * *
31414209 CGTGCTACCGATCCTGCTGTTGGTCCTAC-AGCCGTAACCCTCGGTTCGGT-TCGATCTTAGACT
631 CGTGCTACCAATCCTGCTGCTGGTCCTACTA-CCGCAACCCTCGGTTCGGTCT-GATCTTAGACT
*
31414272 GGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG-AA-A
694 AGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACA
* * * *
31414335 -TGAGCGTGCGGGCACTCAG-CAGGCCA-ATGAGGTAGAATGCGCAAGCCGGGGGCCGGCCCGGT
759 GTGAGCGTGCGGGCACTCAGCCA-GCCAGA-GAGGCAGAATGCGCAAGCCGAGGACCGACCCGGT
*
31414397 CCCCCCTGCGTGCTATCGATCCTGCTACCAC
822 CCCCCCTACGTGCTATCGATCCTGCTACCAC
* * * * *
31414428 AACCCTCGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAA
1 AACCCTCAGTCTGGTCCGATCCTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
* * * *
31414493 TGAGAGTGTGGGCACTCGGTCGACCGGAGAGGCCGATCGAAGAGGCATAATGCACAAGTCGAGGA
66 --AGAGCGT----A--CGG--G--CGCAGA-GCCGATCGAAGAGGCATAATGCACAAGCCGGGGA
* *
31414558 TCAGCCTGGTCCCTCTCTGCATGCTACC-GATCCCGTTGCTACTCCTACTGTGACAACCCTCGAT
118 TCAGCCTGGTCCC-CTCTGCGTGCTACCAG-TCCC---G---CTGC--C----ACAACCCTCGAT
* * * * *
31414622 CTGACTGGCACTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
169 CTGGCTGG--CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCG
* * * * * * * *
31414687 GGGGCTCAGTCGGTCGGAGAGGCAGAATACGTAAGTCGGGGATTGGCTCGATCCCCCCTGTGAGC
232 GGCGCTCAGCCGGTCGGAGAGTCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGC
31414752 TGTCGATCCTGCT
297 TGTCGATCCTGCT
31414765 CTTGGTCCTG
Statistics
Matches: 989, Mismatches: 155, Indels: 94
0.80 0.13 0.08
Matches are distributed among these distances:
859 3 0.00
860 133 0.13
861 1 0.00
862 8 0.01
863 45 0.05
864 113 0.11
866 1 0.00
867 3 0.00
868 3 0.00
869 1 0.00
870 1 0.00
872 31 0.03
873 390 0.39
874 2 0.00
875 1 0.00
876 4 0.00
879 4 0.00
881 2 0.00
883 3 0.00
884 75 0.08
885 165 0.17
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (852 bp):
AACCCTCAGTCTGGTCCGATCCTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA
AGAGCGTACGGGCGCAGAGCCGATCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCTGGTCCC
CTCTGCGTGCTACCAGTCCCGCTGCCACAACCCTCGATCTGGCTGGCTTAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGTCAGAATG
CGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTC
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAAGCCTA
AGTCAACCCCAAGAAACGAGCATACGGGCGCTCAGCCGATCGGAGAGGCATAATGCGTAAGCCAG
GGATCAGCCCGATACCCCTCTGCATGCGGTCAATCCAGCTACCAGTCCCGCTGCCACAACACTCG
ATCCGACTGGGCCTTAGAAATGGAATGAACTCCGTATGCCTAACAGCGTGGGTGATCAACCGACA
AGAGAGAGAGAATGCACAAGCCTGGGATCGGCCCGATCCCCCCAGCGTGCTACCAATCCTGCTGC
TGGTCCTACTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
GACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGTGAGCGTGCGGGCACTCAGCC
AGCCAGAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTATCGATCCTG
CTACCAC
Found at i:31415346 original size:25 final size:26
Alignment explanation
Indices: 31415302--31415353 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
31415292 CTGATCCGAT
*
31415302 CTTAGACTGGGAATGGACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31415328 CTTAGA-TGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31415353 C
1 C
31415354 CTAGTCATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31415735 original size:26 final size:26
Alignment explanation
Indices: 31415697--31415746 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
31415687 GGCTCAAACT
31415697 CTTAGACTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAATGAACTCTGTAAG
31415723 CTTAGACAT-GGAATGAACTCTGTA
1 CTTAGAC-TGGGAATGAACTCTGTA
31415747 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAAG
Found at i:31416378 original size:158 final size:158
Alignment explanation
Indices: 31416079--31416578 Score: 409
Period size: 158 Copynumber: 3.2 Consensus size: 158
31416069 CTCTATATGT
* * * * * * *
31416079 TTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAGGAACGTACGGGCGCTCAGC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCCGGTGCTCAGC
** * * * ** * * * * *
31416143 C-GGCTGGAGAGGCAAAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC-
65 CAATC-GAAGAGACAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCTCTACGTGCTATCGATCT
** **
31416206 CTGCTTTCGTAACCCTCAGTCTGGTCCGATC
129 C-GCTACCACAACCCTCAGTCTGGTCCGATC
* ** * * *
31416237 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT-TCGG-GCGTGAGT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCCGGTGC-TCAGC
** * * * *
31416300 CTGTCGAAGAGACATAATGCACAAGCCGGGGATCAGCCCGGTCCCCTTCTGCGTGCTATCGGTCT
65 CAATCGAAGAGACAGAATGCACAAGCCGGGGATCAGCCCAGTCCCC-TCTACGTGCTATCGATCT
* * **
31416365 CGCTACCACAACCCTCGGTCTGG-CTGGGGC
129 CGCTACCACAACCCTCAGTCTGGTC-CGATC
** * * *
31416395 TTAGACACGAAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCCGGTGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCCGGTGCTCAGCC
* * * ** * *
31416460 AATCGGAGAGGCAGAATGCACAAGCCTGGGATTGGCCCAGTCCCCTCTACGTGCTGTCGATCTTG
66 AATCGAAGAGACAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCTCTACGTGCTATCGATCTCG
* * *
31416525 CTACCGCAACCCTCTGTCTGGTCTGATC
131 CTACCACAACCCTCAGTCTGGTCCGATC
*
31416553 TTAGGCTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
31416579 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 42 0.16
158 179 0.66
159 45 0.17
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCCGGTGCTCAGCC
AATCGAAGAGACAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCTCTACGTGCTATCGATCTCG
CTACCACAACCCTCAGTCTGGTCCGATC
Found at i:31417379 original size:26 final size:26
Alignment explanation
Indices: 31417350--31417402 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31417340 CCGATCTGAT
31417350 CTTAGACT-GGCAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
**
31417376 CTTAGACTAGGGTTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31417402 C
1 C
31417403 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31418211 original size:26 final size:26
Alignment explanation
Indices: 31418167--31418219 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31418157 CTGGTCTGAT
*
31418167 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGATTAAACTCCGTATG
31418193 CTTAGACTAGGGA-TAAACTCCGTATG
1 CTTAGACT-GGGATTAAACTCCGTATG
31418219 C
1 C
31418220 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGATTAAACTCCGTATG
Found at i:31418584 original size:26 final size:26
Alignment explanation
Indices: 31418546--31418598 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31418536 CCGATCCGAT
*
31418546 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31418572 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31418598 C
1 C
31418599 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31418850 original size:158 final size:159
Alignment explanation
Indices: 31418572--31418895 Score: 370
Period size: 158 Copynumber: 2.1 Consensus size: 159
31418562 ACTCTGTATG
* **
31418572 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTTGGGAAGCTCA
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGAAGCTCA
* * ** * * **
31418636 GTCTATCGGAGAGGCAGAATGCACAAGGTGGGGATCAACTCGGTCCCCCTGTGTGCTGTCGATCC
66 GTCCACCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCTACGTGCTGTCGATCC
31418701 TGCT-ACAGCAACCCTCGATCCGATCTGAT
131 TGCTGACA-CAACCCTCGATCCGATCTGAT
* * * *
31418730 CTTAGACTA-GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGG-CGCTGA
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGAAGCTCA
* ** * *
31418793 G-CCAGCCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCTCCTACGTGCTGTCGGT
66 GTCCA-CCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCC-CCTACGTGCTGTCGAT
* * * *
31418857 CCTGCTGCCATAACCCTTGATCCGGTCTGAT
129 CCTGCTGACACAACCCTCGATCCGATCTGAT
31418888 CTTAGACT
1 CTTAGACT
31418896 GACAGTGAAC
Statistics
Matches: 138, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
156 2 0.01
157 38 0.28
158 95 0.69
159 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (159 bp):
CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGAAGCTCA
GTCCACCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCTACGTGCTGTCGATCC
TGCTGACACAACCCTCGATCCGATCTGAT
Found at i:31419297 original size:26 final size:26
Alignment explanation
Indices: 31419268--31419320 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31419258 CCGGTCTGAT
**
31419268 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
*
31419294 CTTAGACACGGAATGAACTCTGTATG
1 CTTAGACACGGAATGAACTCCGTATG
31419320 C
1 C
31419321 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:31419378 original size:721 final size:712
Alignment explanation
Indices: 31417643--31419550 Score: 2080
Period size: 721 Copynumber: 2.7 Consensus size: 712
31417633 TGATCCCGCT
* * * * * *
31417643 GCCACAACCCTCGGTTCGACTGTGGCGTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCA
1 GCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * *
31417708 TGAAACGAG-TATGCAGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAG-TCGAGGATCGGCT
66 CGAAATGAGCT-T-CAGGCGCTTAGCCGA-CGGAGAGGCAGAATGCGCAAGCTAG-GGATCGGCT
* * * * *
31417771 CGATGCACCCCTTGCATGCTACCGATCCTACTGTTGGTCCTGCTGCCACAACCCTCGGTCTGAT-
127 CGAT-C-CCCCATGCATGCTACCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGATC
* * * *
31417835 TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGGCATAGAATGAACTCCGTATGCCTAAGCT
190 T-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
** * * *
31417900 AACCCACAAAACGAGCGTACGGGCGCTCAGCCGACCGAAAAGGTAGAATGCGCAAGTTGGGGACC
254 AACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGTAGAATGCGCAAGGTGGGGACC
* * *
31417965 GCTCCGATCCCCCCTACGTGCTCTCGATCCTGCTGCAGCAACCCTCAGTTCGGTCTGATCTTAGA
319 GCT-CGAT-CCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCAGTCCGATCTGATCTTAGA
* * * * * * * *
31418030 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCGCTAAGTCAGACA
382 TTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCG
* * * * *
31418095 GAGAGACATAAT-C-AGCC------C-GGTCCCCCCTGCGTGCTGTCTATCTTACTACCGTAACC
447 GAGAGGCATAATGCAAGCCGGGGATCAGGTCCCCCCTACGTGCTGTCGATCCTACTACCATAACC
* ** * * *
31418151 CTCTGTCTGGTCTGATCTTAGACTGGGATTGAACTCCGTATGCTTAGACTAGGGATAAACTCCGT
512 CTCTGTCCGGTCTGATCTTAGACTGACAGTGAACTACGTAAGCTTAGACTAGGGATAAACTCCGT
* * * *
31418216 ATGCCTAAGTCAACCCACAAAACGAGCTTACGGGCGCTTAGCCAATCAGAGAGGCCGATCGAAGA
577 ATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCAACCAGAGAGGCCGATCGAAGA
* * * *
31418281 GGCATAATACGTAAGCCAAGGATTAGCCCGATCCCTCTCTGCATGCTGTTGATACTGCTACCGGT
642 GGCATAATACGTAAGCCAAGGATCAGCCCGATCCCTCTCTGCATGCTGCTAATACTACTACCGGT
31418346 CCTGCA
707 CCTGCA
* * *
31418352 TCCACAACCCTC-AGTTCGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
1 GCCACAACCCTCGA-TTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
31418416 ACGAAATGAGCTT-ACGGTGCTTAACCGACTGGAGAGGCAGAATGCGCAAGCTAAGGATCGGCTC
65 ACGAAATGAGCTTCA-GGCGCTTAGCCGAC-GGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTC
* * * * ** * *
31418480 AATCCCTCATGCTTACTGTCGATCCTGCTACTGGTCCTGCTGCCACAACCCTCGATCCGATCCGA
128 GATCCCCCATGCATGCTACCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGATCTGA
*
31418545 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
193 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
** * * * * * * **
31418610 CATGAAACGAGCGTTTGGGAAGCTCAGTCTATCGGAGAGGCAGAATGCACAAGGTGGGGATCAAC
258 CATGAAACGAGCGTACGGG-CGCTCAGCCGATCGAAGAGGTAGAATGCGCAAGGTGGGGA-CCGC
* ** * * *
31418675 TCGGTCCCCCTGTGTGCTGTCGATCCTGCTACAGCAACCCTC-GATCCGATCTGATCTTAGACTA
321 TCGATCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCAG-TCCGATCTGATCTTAGATTG
*
31418739 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGAGCCAGCCGGAG
385 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAG
* * * *
31418804 AGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCTCCTACGTGCTGTCGGTCCTGCTGCCATA
450 AGGCATAATGC--AAGCCGGGGATCAG---G-TCCCCCCTACGTGCTGTCGATCCTACTACCATA
* *
31418869 ACCCT-TGATCCGGTCTGATCTTAGACTGACAGTGAACTACGTAAGCTTAGACTGGGGATGAACT
509 ACCCTCTG-TCCGGTCTGATCTTAGACTGACAGTGAACTACGTAAGCTTAGACTAGGGATAAACT
* * * * * * *
31418933 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGACC-GAAGAGGTCGGTC
573 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCAACCAG-AGAGGCCGATC
* *** ** *
31418997 -AGAGAGGCATAATGC-TCAAG-TTGGAGATCAGCTTGAT-CCTCATCTGCATGCTGCTAATTCT
637 GA-AGAGGCATAATACGT-AAGCCAAG-GATCAGCCCGATCCCTC-TCTGCATGCTGCTAATACT
* *
31419058 ACTACCGGTTCTGCG
698 ACTACCGGTCCTGCA
* * *
31419073 GCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
31419138 GGAAATGAGCGTTCAGGCGTTTAGTCGATCGGAGAGGCAGAATGCGTAAGCTAGGGATCGACCCG
66 CGAAATGAGC-TTCAGGCGCTTAGCCGA-CGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCG
* * * * *
31419203 ATCCCCCCTACATGCTACCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGAT
129 ATCCCCCATGCATGCTACCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGATCTGAT
* * *
31419268 CTTAGACTTGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCTGTATGCCTAAGCCAACCC
194 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * *
31419333 ATGAAACGAGCATGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGTAA-GTCGAGGACCGGTC
259 ATGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGTAGAATGCGCAAGGT-GGGGACCGCTC
* * *
31419397 TGATCCCCCTACGTGCTGTCGATCTTGCTGCTGCAACCCTCAGTCCGATCCGATCTTAGATTGGG
323 -GATCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCAGTCCGATCTGATCTTAGATTGGG
* * * * *
31419462 AATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTGAACAAGCCGGAGA
387 AATGAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGA
*
31419526 GGCATAATGCACAAGCTGGGGATCA
451 GGCATAATG--CAAGCCGGGGATCA
31419551 ACTCGATCAC
Statistics
Matches: 987, Mismatches: 172, Indels: 68
0.80 0.14 0.06
Matches are distributed among these distances:
705 1 0.00
706 236 0.24
707 38 0.04
708 44 0.04
709 64 0.06
710 5 0.01
716 1 0.00
717 1 0.00
720 18 0.02
721 404 0.41
722 172 0.17
723 3 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (712 bp):
GCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAATGAGCTTCAGGCGCTTAGCCGACGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCGAT
CCCCCATGCATGCTACCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGATCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGTAGAATGCGCAAGGTGGGGACCGCTCGAT
CCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCAGTCCGATCTGATCTTAGATTGGGAATG
AACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCAT
AATGCAAGCCGGGGATCAGGTCCCCCCTACGTGCTGTCGATCCTACTACCATAACCCTCTGTCCG
GTCTGATCTTAGACTGACAGTGAACTACGTAAGCTTAGACTAGGGATAAACTCCGTATGCCTAAG
TCAACCCACAAAACGAGCGTACGGGCGCTCAACCAACCAGAGAGGCCGATCGAAGAGGCATAATA
CGTAAGCCAAGGATCAGCCCGATCCCTCTCTGCATGCTGCTAATACTACTACCGGTCCTGCA
Found at i:31419803 original size:26 final size:26
Alignment explanation
Indices: 31419767--31419819 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31419757 TCGGTCTGAT
31419767 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31419793 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31419819 C
1 C
31419820 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31420363 original size:26 final size:26
Alignment explanation
Indices: 31420322--31420374 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31420312 TTGATTCGAT
*
31420322 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31420348 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
31420374 C
1 C
31420375 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31420559 original size:556 final size:554
Alignment explanation
Indices: 31419460--31420567 Score: 1512
Period size: 554 Copynumber: 2.0 Consensus size: 554
31419450 TCTTAGATTG
** *
31419460 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTGAACAAGCCGGAG
1 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAACAAGCCGAAG
* * *
31419525 AGGCATAATGCACAAGCTGGGGATCAACTCGATCACCATCTGCGTGCTACCGGTCCCGCTACCAC
66 AGGCATAATGCACAAGCTGGGGATCAACCCGATCACCATCTGCGTCCTACCAGTCCCGCTACCAC
* * *
31419590 AACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGTAA
131 AACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* ** * * * ** *
31419655 CGGGCGTGCGGGCACTCCGTCGGCCGAAGAGGTAGAATGCGTAAGCCAGGGATCGACCCGGTCCC
196 CCGAAGTGCGGACACTCCGTCAGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCC
** *
31419720 CCCTGCGTGCTATTGATCCTACTGCCGCAACCCTGGTTCGGTCTGATCTTAGACTGGGAATGAAC
261 CCCTGCGTGCTACCGATCCTACTACCGCAACCCTGGTTCGGTCTGATCTTAGACTGGGAATGAAC
* * *
31419785 TCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCACAAAATGAGCATGCAAAT
326 TCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCACAAAACGAGCATGCAAAC
* *
31419850 GCTCAGCCGACTAGAGAGGCAGGATGTGCAAGTCAGGGATCGAACGGGTGGTAGGTGGGTTCAAG
391 GCTCAGCCGACCAGAGAGGCAGGATGTGCAAGTCAGGGATCGAACCGGTGGTAGGTGGGTTCAAG
* *
31419915 CACATCTTCATATTTCTATCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
456 CACATCTTCATATTTCTACCGTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
31419980 CTATGCCTTCATGTGAGGTTTCGTGGCAAGACAT
521 CTATGCCTTCATGTGAAGTTTCGTGGCAAGACAT
* * *
31420014 GGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GAGCACTGAGCCAGTCGA
1 GGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG-GCACTGAACAAGCCGA
* * * * * *
31420077 AGAGGCATAATGCGCAAG-TCGGGGATCGACCCGATCGCCATCTGTGTCCTGCCAGTCCCGCTGC
64 AGAGGCATAATGCACAAGCT-GGGGATCAACCCGATCACCATCTGCGTCCTACCAGTCCCGCTAC
* * *
31420141 CACAACCTTC-GATCCAGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
128 CACAACCCTCAG-TCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * *
31420205 GAAACCGAAGTGTGGACGCTCAAC-T-AGTCGGAGAGGCAGAATGCACAAGTC-GAGGATCGCCC
192 GAAACCGAAGTGCGGACACTC--CGTCAGCCGAAGAGGCAGAATGCACAAGCCAG-GGATCGACC
* * * * * *
31420267 CGATCCCCCCTGCGTGTTGCCGATCCTGCTACCGTAACCCTCGGTTTGAT-TCGATCTTAGACTG
254 CGATCCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCT-GGTTCGGTCT-GATCTTAGACTG
* * *
31420331 GGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCGACCCACGAAACGA
317 GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTC-AACCACAAAACGA
** *
31420396 GCATGCGGACGCTCAGCCGACCAGAGAGGCAGGATGTGCAAGTCGGGGATCGAACCGGTGGTAGG
381 GCATGCAAACGCTCAGCCGACCAGAGAGGCAGGATGTGCAAGTCAGGGATCGAACCGGTGGTAGG
* * *
31420461 TGGGTTCAAGCACATCTTCATATTTCTGCCTTGATAATGCCATTTTTATGGCTTGTAAATTCATA
446 TGGGTTCAAGCACATCTTCATATTTCTACCGTGACAATGCCATTTTTATGGCTTGTAAATTCATA
31420526 CAATGGTCCCCTATGCCTTCATGTGAAGTTTCGTGGCAAGAC
511 CAATGGTCCCCTATGCCTTCATGTGAAGTTTCGTGGCAAGAC
31420568 GACCCGTTTT
Statistics
Matches: 482, Mismatches: 62, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
553 5 0.01
554 238 0.49
555 68 0.14
556 171 0.35
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (554 bp):
GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAACAAGCCGAAG
AGGCATAATGCACAAGCTGGGGATCAACCCGATCACCATCTGCGTCCTACCAGTCCCGCTACCAC
AACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CCGAAGTGCGGACACTCCGTCAGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCC
CCCTGCGTGCTACCGATCCTACTACCGCAACCCTGGTTCGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCACAAAACGAGCATGCAAAC
GCTCAGCCGACCAGAGAGGCAGGATGTGCAAGTCAGGGATCGAACCGGTGGTAGGTGGGTTCAAG
CACATCTTCATATTTCTACCGTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
CTATGCCTTCATGTGAAGTTTCGTGGCAAGACAT
Found at i:31421353 original size:159 final size:159
Alignment explanation
Indices: 31421058--31421346 Score: 389
Period size: 159 Copynumber: 1.8 Consensus size: 159
31421048 GAACTCCTAT
* *
31421058 GCTTAGACATGGAATGAACTAAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTAACTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
31421123 CCGGCCAGAGAGCCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTATGTGCTGCCGGTC
66 CCAACCAGAGAGCCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTATGTGCTGCCGATC
31421188 TCACTGCCACAACCCTCGATCCTGCTGGG
131 TCACTGCCACAACCCTCGATCCTGCTGGG
** * *
31421217 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTAACTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * *
31421282 CCAACCGGAGAGGCAGAATGCGTAAGTTGGGGATCGACCCGATCCCCCCCTGTGTGCTGTCGATC
66 CCAACCAGAGAGCCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTATGTGCTGCCGATC
31421347 CTACTGCTGG
Statistics
Matches: 109, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
159 109 1.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTAACTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAACCAGAGAGCCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTATGTGCTGCCGATC
TCACTGCCACAACCCTCGATCCTGCTGGG
Found at i:31421807 original size:26 final size:26
Alignment explanation
Indices: 31421778--31421830 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31421768 CTGATCCGAT
* *
31421778 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCATATG
31421804 CTTAGACATGGAATAAACTCCATATG
1 CTTAGACATGGAATAAACTCCATATG
31421830 C
1 C
31421831 CGAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:31422146 original size:157 final size:159
Alignment explanation
Indices: 31421804--31422459 Score: 659
Period size: 157 Copynumber: 4.2 Consensus size: 159
31421794 ACTCCGTATG
* * * * * * *
31421804 CTTAGACAT-GGAATAAACTCCATATGCCGAAGCCAACCCATAAAATGAGCGTGCAGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAG
* * * * *
31421868 TC-GATCGGAGAGGCAGAATGCATAAGCTGAGGACCGGCCCAGTCCCCCCTGTGTGTTGTTGATC
65 CCAGATCGGAGAGGCAGAATGCACAAGCTAAGGACCGGCCCAGTCCCCCCTGTGTGCTGTCGATC
* * *
31421932 CTGCTACCGCAACCCTTGATTTGATCTGAT
130 CTGCTGCCGCAACCCTCGATCTGATCTGAT
31421962 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAG-
1 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGC
* * * *
31422026 CAGATCGGAGAGGCAGAATGCATAAGCTGAGGACCGGCCCAGT-CCCCCTGTGTGTTGTTGATCC
66 CAGATCGGAGAGGCAGAATGCACAAGCTAAGGACCGGCCCAGTCCCCCCTGTGTGCTGTCGATCC
*
31422090 TGCTGCCGCAACCCTTGATCTGATCTGAT
131 TGCTGCCGCAACCCTCGATCTGATCTGAT
* * *
31422119 CTTAGACTGGGAATGAACTTCGTATACCTAAGTCAACCCACAAAATGAGCGTTCGGGCACTAAGC
1 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGC
** * * * * * * *
31422184 C-GATCTCAGAGGCATAATGCGCAAGCCAAGGATCGGCCCAATCCTCCTCTACT-TGCTGTCGAT
66 CAGATCGGAGAGGCAGAATGCACAAGCTAAGGACCGGCCCAGTCC-CCCCT-GTGTGCTGTCGAT
* * * * **
31422247 CCCGCTGCCACAACCCTCGGTCTG-GCTGGGG
129 CCTGCTGCCGCAACCCTCGATCTGATCT-GAT
* * * ** * * **
31422278 CTTAGAGAT-GGAATGAACTCC-TATGCCTAAGCCAACCCATGAAATGGGCATGCGGGTGCTCAG
1 CTTAGA-CTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAG
* ** * * * *
31422341 CCAG-TCGGAGAGACAGAATGTGCAAG-TCAAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
65 CCAGATCGGAGAGGCAGAATGCACAAGCT-AAGGACCGGCCCAGTCCCCCCTGTGTGCTGTCGAT
* * * *
31422404 CCTACTGCCGCAACCCTCGGTCCGATCCGAT
129 CCTGCTGCCGCAACCCTCGATCTGATCTGAT
31422435 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
31422460 GCTTAGACTG
Statistics
Matches: 419, Mismatches: 65, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.00
157 196 0.47
158 169 0.40
159 51 0.12
160 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGC
CAGATCGGAGAGGCAGAATGCACAAGCTAAGGACCGGCCCAGTCCCCCCTGTGTGCTGTCGATCC
TGCTGCCGCAACCCTCGATCTGATCTGAT
Found at i:31422464 original size:26 final size:26
Alignment explanation
Indices: 31422435--31422487 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31422425 CCGATCCGAT
31422435 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31422461 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31422487 C
1 C
31422488 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31423175 original size:26 final size:26
Alignment explanation
Indices: 31423146--31423198 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31423136 CTGATCCGAT
*
31423146 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
31423172 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
31423198 C
1 C
31423199 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:31423896 original size:159 final size:159
Alignment explanation
Indices: 31423551--31424138 Score: 474
Period size: 159 Copynumber: 3.7 Consensus size: 159
31423541 AACTCTATAT
* * * *
31423551 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * *
31423616 CCGGTCAGAGAGGCAGAATGCTTAAGCCGGGGATTGACCCGGTCTCCCCTACGTGC-TGT--CGA
66 CCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGACCC-G-ATCCCCTTC-TGCATGTACCGA
* ** * * * * *
31423678 TCCTGCTATCGCAACCCTCGGT-CTG-GTCCGA
128 TCCCGCTGCCACAACCCTCAGTCCTGACT-GGG
* ** * * * *
31423709 TCTTAGAC-TGGGAATGAACTCAATATGCCTAAATCAACTCACGAAACTAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** *
31423773 TCCAGCCGGAGAGACATAATGTGCAAGTCGGGGATCGACTTGAT-CCCTATCTGCTTGCTACCGA
65 GCCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCT-TCTGCATG-TACCGA
* *
31423837 TCCCGTTGCCATAACCCTCAGTCC-GACTGGG
128 TCCCGCTGCCACAACCCTCAGTCCTGACTGGG
* * * * * *
31423868 GCTTAGACATGGAATGAATTCCCTATGCCTCAGCTAACCCACGAAAGGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * ** *
31423933 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTCTGCATGTGTCGGTCC
66 CCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTTCTGCATGTACCGATCC
* *
31423998 CGCTGCCACAACCCTCGGTCCTGGCTGGG
131 CGCTGCCACAACCCTCAGTCCTGACTGGG
* * * * *
31424027 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
31424092 CCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATC-AGCCCGATCCCC
66 CCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCC
31424139 CCTGCGTGCT
Statistics
Matches: 338, Mismatches: 80, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
155 7 0.02
156 4 0.01
157 3 0.01
158 105 0.31
159 212 0.63
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTTCTGCATGTACCGATCC
CGCTGCCACAACCCTCAGTCCTGACTGGG
Found at i:31424215 original size:26 final size:26
Alignment explanation
Indices: 31424186--31424238 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31424176 CCAATCTGAT
31424186 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
31424212 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
31424238 C
1 C
31424239 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:31424888 original size:26 final size:26
Alignment explanation
Indices: 31424858--31424917 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
31424848 CGATGGTACC
*
31424858 CCGTATGCTTAGATATGGAGTGAACT
1 CCGTATGCTTAGAGATGGAGTGAACT
*
31424884 CCGTATGCTTGGAGATGGAGTGAACT
1 CCGTATGCTTAGAGATGGAGTGAACT
*
31424910 CTGTATGC
1 CCGTATGC
31424918 CTAAGCCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CCGTATGCTTAGAGATGGAGTGAACT
Found at i:31425237 original size:26 final size:26
Alignment explanation
Indices: 31425208--31425260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31425198 CTGGTCCGAT
*
31425208 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31425234 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31425260 C
1 C
31425261 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31425852 original size:159 final size:157
Alignment explanation
Indices: 31425443--31425910 Score: 433
Period size: 159 Copynumber: 3.0 Consensus size: 157
31425433 AATCCGTATA
* * * * * *
31425443 CTTAGACATGGAATGAACTTCGTATGCCTAAGCAAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
31425508 CGGCCAGAGAGGCAGAATGCACAAGCCGGGGA-CTGGCCCGGTCCCCCTTGCGTGCTATCGATCC
66 C-GCCGGAGAGGCAGAATGCACAAGCTGGGGATC-GACCCGATCCCCCTTACATGCTATCGATCC
* * ** * * *
31425572 TACTGCTGCAACCCTTGGTCCGATCTGAT
129 CACAGCCACAACCCTCGATCCGATCTGAG
* * * * *
31425601 CTTAGAC-TGAGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTTCGGGCACTGAG
1 CTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** * * *
31425665 CCGACCGGAGAGGTATAATGTGCAAGCTGGGGATCGACCCGATCCCTCTTTACATGTTATCGGTC
65 CCG-CCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCC-CCTTACATGCTATCGATC
*
31425730 CCACAGCCACAACCCTCGATCCGA-CTGGGG
128 CCACAGCCACAACCCTCGATCCGATCT-GAG
* *
31425760 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
31425825 CAGTCGGAGAGGCAGAATGCACAAGCTGGTGATCGGCCCAGA-CCCCCTTTCGTGCTGTCGATCC
66 C-GCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCC-GATCCCCCTTACATGCTATCGATCC
* * *
31425889 TACTA-CCGCAACCCTCGGTCCG
129 CAC-AGCCACAACCCTCGATCCG
31425911 GTCCAATCTT
Statistics
Matches: 246, Mismatches: 55, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 116 0.47
159 122 0.50
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCTTACATGCTATCGATCCCA
CAGCCACAACCCTCGATCCGATCTGAG
Found at i:31425954 original size:26 final size:26
Alignment explanation
Indices: 31425918--31425970 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31425908 CCGGTCCAAT
*
31425918 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31425944 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31425970 C
1 C
31425971 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31426338 original size:26 final size:26
Alignment explanation
Indices: 31426299--31426350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31426289 CTGATCTAAT
31426299 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
31426325 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
31426351 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:31426685 original size:125 final size:126
Alignment explanation
Indices: 31426449--31426692 Score: 303
Period size: 125 Copynumber: 1.9 Consensus size: 126
31426439 TACGTGCTGT
* * * * * * *
31426449 CGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
1 CGATCCCGCTGCCACAACCCTCGGTCCGATCTGAGCTTAAACTGGGAATCAACTCCCTATGCCTA
* * * * * * *
31426514 AGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCAACCGAAGAGGCATAATGTGCAAGC
66 AGCCAACCAACGAAACGAGCGTGCGGGCGCTCAACCAACCGAAGAGGCAGAATGTGCAAGC
*
31426575 CGATCCCGCTGCCACAACCCTCGGTCCGA-CTGGGCTTAAACAT-GGAATCAACTCCCTATGCCT
1 CGATCCCGCTGCCACAACCCTCGGTCCGATCTGAGCTTAAAC-TGGGAATCAACTCCCTATGCCT
* * *
31426638 AAGCCAACCAACGAAACGGGCGTGCGGGCGCTCAACCAATCGGAGAGGCAGAATG
65 AAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAACCAACCGAAGAGGCAGAATG
31426693 CAGAAGCTGG
Statistics
Matches: 99, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
125 72 0.73
126 27 0.27
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.17
Consensus pattern (126 bp):
CGATCCCGCTGCCACAACCCTCGGTCCGATCTGAGCTTAAACTGGGAATCAACTCCCTATGCCTA
AGCCAACCAACGAAACGAGCGTGCGGGCGCTCAACCAACCGAAGAGGCAGAATGTGCAAGC
Found at i:31426817 original size:26 final size:25
Alignment explanation
Indices: 31426767--31426818 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
31426757 CCAATCCGAT
*
31426767 CTTAGACTGGGAATGAACTCTTATG
1 CTTAGACTGGGAATGAACTCGTATG
*
31426792 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
31426818 C
1 C
31426819 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:31427080 original size:158 final size:156
Alignment explanation
Indices: 31426792--31427755 Score: 751
Period size: 158 Copynumber: 6.2 Consensus size: 156
31426782 AACTCTTATG
* * * * * *
31426792 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCATGAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * *
31426857 CGATCGAAGAGGCATAATGCGCAAGTC-GAGGATCGACCCGGTCCCTCTTGCGTGCTGTC-ATTC
66 CGACCG-AGAGGCATAATGCGCAAGCCAG-GGATCGACCCAGTCCCCCTTGCGTGCTGTCGA-TC
*
31426920 CTGTTGCCACAACCCTCGATCC-AGTCTGAT
128 CTGCTGCCACAACCCTCG-TCCGA-TCTGAT
* *
31426950 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGATCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * * *
31427015 CGGCCGAAGAGGCATAATGGGCAAGTCGGGGATCGACCCAGTCCCCCTTGCGTGCT-ACTGATCC
66 CGACCG-AGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTTGCGTGCTGTC-GATCC
**
31427079 TGCTGCCACAACCCTCGATCCGAT-TGGGG
129 TGCTGCCACAACCCTCG-TCCGATCT-GAT
* * * * * * * *
31427108 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGGGTGGGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * *
31427172 TCGACCTGAGAGGC-TGAATGCACAAGCCAGGGATC-AGCCC-GATCCCCTCCTGCGTGCTGTCG
65 CCGACC-GAGAGGCAT-AATGCGCAAGCCAGGGATCGA-CCCAG-TCCCC-CTTGCGTGCTGTCG
* *
31427234 ATCTTGCTGCCCCAACCCTCGGTCC-AGTCTGAT
125 ATCCTGCTGCCACAACCCTC-GTCCGA-TCTGAT
** * * * * * * *
31427267 CTTAGACTGGGAATGAACTTTGTATG-CTTAG---A--CATGGAATGAAC-TCCGTATGC-CTAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG--GGCGCTGA
* * * * * * * * * *
31427324 GCCAACCCACGAAG--TGA-GCG--TG-CGGGGATTGGCCCGGT-CCCCTCTGCGTGCTATCGAT
64 GCCGACCGA-GAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCT-TGCGTGCTGTCGAT
* *
31427382 CCTGCTACTACAACCCTCGGTCCGATCTGAT
127 CCTGCTGCCACAACCCTC-GTCCGATCTGAT
* * *
31427413 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGTCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* *
31427478 CGACCGGAGAGGCATAATACGCAAGCCAGGGATCGATCCAGTCCCCCTCTGCGTGCTGTCGATCC
66 CGACC-GAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCT-TGCGTGCTGTCGATCC
* **
31427543 CGCTGCCACAACCCTCTGTCCGAT-TGGGG
129 TGCTGCCACAACCCTC-GTCCGATCT-GAT
* * ***
31427572 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGATAGCTCG-
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT-GA
* * * * * * * * * *
31427635 GCCGATCGGAGATGCAAAATGTGTAAGCCAGGGATCTACCCAGTCCCCCCTGCATGCTGCCAATC
64 GCCGA-CCGAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTTGCGTGCTGTCGATC
*
31427700 CTGCTGCCGCAACCCTCCGTCCGATCTGAT
128 CTGCTGCCACAACCCT-CGTCCGATCTGAT
*
31427730 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31427756 TTTGGACATT
Statistics
Matches: 642, Mismatches: 118, Indels: 92
0.75 0.14 0.11
Matches are distributed among these distances:
145 1 0.00
146 66 0.10
147 15 0.02
148 2 0.00
150 3 0.00
151 2 0.00
152 24 0.04
153 22 0.03
154 4 0.01
155 3 0.00
157 7 0.01
158 291 0.45
159 196 0.31
160 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
CGACCGAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGTCCGATCTGAT
Found at i:31427317 original size:26 final size:26
Alignment explanation
Indices: 31427267--31427319 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31427257 CCAGTCTGAT
**
31427267 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31427293 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31427319 C
1 C
31427320 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31427663 original size:159 final size:159
Alignment explanation
Indices: 31427362--31427755 Score: 490
Period size: 159 Copynumber: 2.5 Consensus size: 159
31427352 TTGGCCCGGT
* * * *
31427362 CCCCTCTGCGTGCTATCGATCCTGCTACTACAACCCTCGGTCCGATCTGATCTTAGACTGGGAAT
1 CCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCCGTCCGATCTGATCTTAGACTGGGAAT
* * * * * *
31427427 GAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGTCGTTGAGCCGACCGGAGAGGCA
66 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGATAGTCGAGCCGACCGGAGAGGCA
* *
31427492 TAATACGCAAGCCAGGGATCGATCCAGTC
131 AAATACGCAAGCCAGGGATCGACCCAGTC
* * **
31427521 CCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCTGTCCGAT-TGGGGCTTAGACAT-GGA
1 CCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCCGTCCGATCT-GATCTTAGAC-TGGGA
* *
31427584 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGATAGCTCG-GCCGATCGGAGAT
64 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGATAG-TCGAGCCGACCGGAGAG
** * *
31427648 GCAAAATGTGTAAGCCAGGGATCTACCCAGTC
128 GCAAAATACGCAAGCCAGGGATCGACCCAGTC
* * * * *
31427680 CCCC-CTGCATGCTGCCAATCCTGCTGCCGCAACCCTCCGTCCGATCTGATCTTAAACTGGGAAT
1 CCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCCGTCCGATCTGATCTTAGACTGGGAAT
31427744 GAACTCCGTATG
66 GAACTCCGTATG
31427756 TTTGGACATT
Statistics
Matches: 200, Mismatches: 30, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
157 1 0.00
158 60 0.30
159 136 0.68
160 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (159 bp):
CCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCCGTCCGATCTGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGATAGTCGAGCCGACCGGAGAGGCA
AAATACGCAAGCCAGGGATCGACCCAGTC
Found at i:31427772 original size:463 final size:463
Alignment explanation
Indices: 31426893--31427812 Score: 1219
Period size: 463 Copynumber: 2.0 Consensus size: 463
31426883 CGAGGATCGA
* * *
31426893 CCCGGTCCCTCTTGCGTGCTGTCATTCCTGTTGCCACAACCCTCGATCCAGTCTGATCTTAGACT
1 CCCGGTCCCTCTTGCGTGCTATCATTCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAGACT
* *
31426958 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGATCGTGCGGGCGCTGAGCCGGCCGAA
66 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGAA
** * * *
31427023 GAGGCATAATGGGCAAGTCGGGGATCGACCCAGTCCCCCTTGCGTGCTACTGATCCTGCTGCCAC
131 GAGGCATAATACGCAAGCCAGGGATCGACCCAGTCCCCCTTGCGTGCTACTGATCCCGCTGCCAC
*
31427088 AACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATGAAA
196 AACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAA
* * * * * * **
31427153 CGGGTGGGCGGGCGCTCAGTCGACCTGAGAGGCTGAATGCACAAGCCAGGGATCAGCCCGATCCC
261 CGAGCGGGCGAGAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCCCGATCCC
* * * * * *
31427218 CTCCTGCGTGCTGTCGATCTTGCTGCCCCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGA
326 CTCCTGCATGCTGCCAATCCTGCTGCCCCAACCCTCCGTCCAGTCTGATCTTAAACTGGGAATGA
** * **
31427283 ACTTTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGTGAGCGTGCG
391 ACTCCGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
31427348 GGGATTGG
456 GGGATTGG
* *
31427356 CCCGGTCCC-CTCTGCGTGCTATCGA-TCCTGCTACTACAACCCTCGGTCC-GATCTGATCTTAG
1 CCCGGTCCCTCT-TGCGTGCTATC-ATTCCTGCTACCACAACCCTCGATCCAG-TCTGATCTTAG
* * * *
31427418 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGTCGTTGAGCCGACC
63 ACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACC
* * *
31427483 GGAGAGGCATAATACGCAAGCCAGGGATCGATCCAGTCCCCCTCTGCGTGCT-GTCGATCCCGCT
128 GAAGAGGCATAATACGCAAGCCAGGGATCGACCCAGTCCCCCT-TGCGTGCTACT-GATCCCGCT
*
31427547 GCCACAACCCTCTG-TCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
191 GCCACAACCCTC-GATCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAC
* * * * * ***
31427611 ACGAAACGAGCGTGCGATAGCTCGGCCGATCGGAGATGCAAAATGTGTAAGCCAGGGATCTA-CC
255 ACGAAACGAGCGGGCGAGAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCAGGGATC-AGCC
*
31427675 C-AGTCCCC-CCTGCATGCTGCCAATCCTGCTGCCGCAACCCTCCGTCC-GATCTGATCTTAAAC
319 CGA-TCCCCTCCTGCATGCTGCCAATCCTGCTGCCCCAACCCTCCGTCCAG-TCTGATCTTAAAC
* * * *
31427737 TGGGAATGAACTCCGTATGTTTGGACATTGAATGAACTCAGTATGCCTAAGCCAACCCATGAAAC
382 TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAAC
31427802 GAGCGTGCGGG
447 GAGCGTGCGGG
31427813 CACTAACTGA
Statistics
Matches: 395, Mismatches: 53, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
462 4 0.01
463 260 0.66
464 129 0.33
465 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (463 bp):
CCCGGTCCCTCTTGCGTGCTATCATTCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGAA
GAGGCATAATACGCAAGCCAGGGATCGACCCAGTCCCCCTTGCGTGCTACTGATCCCGCTGCCAC
AACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAA
CGAGCGGGCGAGAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCCCGATCCC
CTCCTGCATGCTGCCAATCCTGCTGCCCCAACCCTCCGTCCAGTCTGATCTTAAACTGGGAATGA
ACTCCGTATGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
GGGATTGG
Found at i:31438363 original size:26 final size:26
Alignment explanation
Indices: 31438334--31438386 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31438324 CCGGTCTGAT
*
31438334 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31438360 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31438386 C
1 C
31438387 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31439435 original size:26 final size:27
Alignment explanation
Indices: 31439384--31439441 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
31439374 CCGATCCGAT
*
31439384 CTTAGACTGGGAATGAACTCTATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
* * *
31439410 CTTAGACTGGGGATGAATTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
31439437 CTTAG
1 CTTAG
31439442 TCAACCCATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:31439622 original size:26 final size:26
Alignment explanation
Indices: 31439593--31439644 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31439583 CCGATCTGGT
31439593 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
31439619 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31439645 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31439874 original size:158 final size:158
Alignment explanation
Indices: 31439619--31439954 Score: 383
Period size: 158 Copynumber: 2.1 Consensus size: 158
31439609 ACTCCGTATG
* * * * * **
31439619 CTTAGACAT-GGAATGAACTTCGTATGTCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCGG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
** * * *
31439683 CCTGTCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCCTAGTCCCC-CTTTTATGCTAAC-GAT
65 CAAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCATAGTCCCCGC-TGTATGCT-ACTGAT
* * *
31439746 CTTGCTACCACAACCCTTGGTCCGGTTTGAT
128 CCTGCTACCACAACCCTTGGTCCAGTTAGAT
*
31439777 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
* * * * * *
31439842 AAG-CTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCATGGTCCCCGCTGTGTGCTGCTGATCC
66 AAGTC-GGAGAGGCAGAATGCACAAGCCAGGGATCGGCATAGTCCCCGCTGTATGCTACTGATCC
* **
31439906 TGCTGCTGCAACCCTTGGTCCAGTTAGAT
130 TGCTACCACAACCCTTGGTCCAGTTAGAT
31439935 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
31439955 TATATGCTTA
Statistics
Matches: 149, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.02
158 145 0.97
159 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
AAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCATAGTCCCCGCTGTATGCTACTGATCCT
GCTACCACAACCCTTGGTCCAGTTAGAT
Found at i:31441187 original size:158 final size:157
Alignment explanation
Indices: 31440654--31441317 Score: 550
Period size: 159 Copynumber: 4.2 Consensus size: 157
31440644 CGTGGCTCAA
* * * *
31440654 AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACAAGCGTGC-AGGCGCT
1 AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGA-GCGCT
* * * * * *
31440718 CAACCGGTCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGTGAGCTATCG
65 CAACCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCCCTGCGTGCTATCG
31440783 ATCCTGCTGCCGCAACCCTCGGTCCGGTCC
129 ATCCTGCTGCCGCAACCCTCGGTCC-GTCC
* ** * * ** *
31440813 AATCTTAGACTGGGAATGAAC-TCTGTAT-CCATAAGTCAACCCATGAAATGAGCATATGGGCGC
1 AATCTTAGACTGGGAATGAACTTC-GTATGCC-TAAGCCAACCCACAAAACGAGCGTGCGAGCGC
* * * * *
31440876 T-AAGCCGACCGAAGAGGCATAATGCGCAAGTCAAGGATCGACCCGATCCCCCTCTGCGTGCTGT
64 TCAA-CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTAT
* * * * * * *
31440940 CGGT-CTCACTGCCACAACCCTCAGTCTGGCTG
127 CGATCCT-GCTGCCGCAACCCTCGGTCCGTC-C
*** *
31440972 GGGCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGCGC
1 AATCTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGC
* * * * * *
31441035 TCAACCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCATGCGTGCTGTCG
64 TCAACCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCG
*
31441100 ATCCTGCTACCGCAACCCTCGGTCCAGTCC
129 ATCCTGCTGCCGCAACCCTCGGTCC-GTCC
* * * * * * * * *
31441130 AATCTTAGACTGGGAATGAACTTCGTATGCCCAAGTCAATCCATAAAATGAGTGTGCGGGCACTG
1 AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTC
* * * * * * * * * * *
31441195 AGCCAGCCGGAGAGGCATAATACGCAGGCCAGAGATCGACTCGGTCCCCCCTGCATGCTACCGAT
66 AACCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGAT
* * *
31441260 CCTGCTGCCGTAACCTTCGGTCCGATCT
131 CCTGCTGCCGCAACCCTCGGTCCG-TCC
* * * *
31441288 GATCATAGATTGGGAATGAACTCCGTATGC
1 AATCTTAGACTGGGAATGAACTTCGTATGC
31441318 TTAGACTGGG
Statistics
Matches: 393, Mismatches: 95, Indels: 35
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 187 0.48
159 195 0.50
160 5 0.01
161 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTC
AACCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGAT
CCTGCTGCCGCAACCCTCGGTCCGTCC
Found at i:31441234 original size:317 final size:317
Alignment explanation
Indices: 31440657--31441253 Score: 789
Period size: 317 Copynumber: 1.9 Consensus size: 317
31440647 GGCTCAAAAT
31440657 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACAAGCGTGCAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACAAGCGTGCAGGCGCTCAAC
** * *
31440722 CGGTCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGTGAGCTATCGATCC
66 CGGTCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCATGCGAGCTATCGATCC
* * *
31440787 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATCCATAAGTCAA
131 TGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATCCACAAGTCAA
* * * * *
31440852 CCCATGAAATGAGCATATGGGCGCTAAGCCGACCGAAGAGGCATAATGCGCAAGTCAAGGATCGA
196 CCCATAAAATGAGCATACGGGCACTAAGCCGACCGAAGAGGCATAATACGCAAGCCAAGGATCGA
*
31440917 CCCGATCCCCCTCTGCGTGCTGTCGGTCTCACTGCCACAACCCTCAGTCTGGCTGGGG
261 CCCGATCCCCC-CTGCATGCTGTCGGTCTCACTGCCACAACCCTCAGTCTGGCTGGGG
* **
31440975 CTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACAAAACGGGCGTGC-GAGCGCTC
1 CTTAGAC-TGGGAATGAACTC-CATATGCCTAAGCCAACCAACAAAACAAGCGTGCAG-GCGCTC
** * *
31441037 AACCGG-CTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAAT-CCCCCATGCGTGCTGTCG
63 AACCGGTC-AAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCATGCGAGCTATCG
31441100 ATCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACT-TCGTATGCC-CA
127 ATCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCT-GTAT-CCACA
* ** * * * *
31441163 AGTCAATCCATAAAATGAGTGTGCGGGCACTGAGCC-AGCCGGAGAGGCATAATACGCAGGCC-A
190 AGTCAACCCATAAAATGAGCATACGGGCACTAAGCCGA-CCGAAGAGGCATAATACGCAAGCCAA
* *
31441226 GAGATCGACTCGGTCCCCCCTGCATGCT
254 G-GATCGACCCGATCCCCCCTGCATGCT
31441254 ACCGATCCTG
Statistics
Matches: 242, Mismatches: 29, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
316 12 0.05
317 134 0.55
318 94 0.39
319 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACAAGCGTGCAGGCGCTCAAC
CGGTCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCATGCGAGCTATCGATCC
TGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATCCACAAGTCAA
CCCATAAAATGAGCATACGGGCACTAAGCCGACCGAAGAGGCATAATACGCAAGCCAAGGATCGA
CCCGATCCCCCCTGCATGCTGTCGGTCTCACTGCCACAACCCTCAGTCTGGCTGGGG
Found at i:31441322 original size:26 final size:26
Alignment explanation
Indices: 31441293--31441343 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31441283 GATCTGATCA
* *
31441293 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
31441319 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
31441344 CGAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:31441697 original size:26 final size:26
Alignment explanation
Indices: 31441659--31441711 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31441649 TCGGTTCAAT
*
31441659 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
31441685 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
31441711 C
1 C
31441712 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:31445512 original size:159 final size:159
Alignment explanation
Indices: 31445209--31445615 Score: 363
Period size: 159 Copynumber: 2.6 Consensus size: 159
31445199 ATGGCTCAAA
* * ** * *
31445209 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCA
1 ATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGAGTGCAGGCACTCA
* *** * **
31445274 GCCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCAACTTGGTCCCCCCTTGTGTGCTGTCAAT
66 GCCGACCGAAGAGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCCTTGCGTGCTACCAAT
* * *
31445339 CCTGCTGCCGCAACCCTTGGTCCGGTCTG
131 CCCGCTCCCACAACCCTTGGTCCGGTCTG
* * * * *
31445368 ATCTTAGACTGGAAATGAACTCTGTAT-CCATAAGTCAACCCACAAAACAAGCGTGCAGGCATTG
1 ATCTTAGACTGGAAATGAACTCCGTATGCC-TAAGCCAACCCACAAAACAAGAGTGCAGGCACTC
* * * ** *
31445432 AGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTCTGCGTGCTACCG
65 AGCCGACCGAAGAGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCCT-TGCGTGCTACCA
*
31445496 ATCCCGCTCCCACAACCCTTGGTCCCAG-CTGG
129 ATCCCGCTCCCACAACCCTTGGT-CCGGTCT-G
** * * ** * * * *
31445528 GGCTTAGACATTG-AATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGTGTGCGGGCGCTC
1 ATCTTAGAC-TGGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGAGTGCAGGCACTC
* ** *
31445592 AGTCGGTCGGAGAGGCAGAATGCG
65 AGCCGACCGAAGAGGCAGAATGCG
31445616 TAAGTCAGGG
Statistics
Matches: 196, Mismatches: 46, Indels: 11
0.77 0.18 0.04
Matches are distributed among these distances:
158 8 0.04
159 116 0.59
160 68 0.35
161 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGAGTGCAGGCACTCA
GCCGACCGAAGAGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCCTTGCGTGCTACCAAT
CCCGCTCCCACAACCCTTGGTCCGGTCTG
Found at i:31446983 original size:26 final size:27
Alignment explanation
Indices: 31446954--31447005 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
31446944 TCTTAGACTG
* *
31446954 GGAATGAATTCTGTATGCCT-AGACAC
1 GGAATGAACTCCGTATGCCTAAGACAC
31446980 GGAATGAACTCCGTATGCCTAAGACA
1 GGAATGAACTCCGTATGCCTAAGACA
31447006 ACCCACGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
GGAATGAACTCCGTATGCCTAAGACAC
Found at i:31447158 original size:26 final size:26
Alignment explanation
Indices: 31447129--31447181 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31447119 CCGATTGGAT
31447129 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
31447155 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
31447181 C
1 C
31447182 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:31447367 original size:26 final size:26
Alignment explanation
Indices: 31447338--31447390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31447328 CCGGTCTGAT
*
31447338 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31447364 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31447390 C
1 C
31447391 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31447868 original size:26 final size:26
Alignment explanation
Indices: 31447831--31447890 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
31447821 CCTCGATCCG
31447831 ATCCG-AT-CTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
31447855 ATCCGTATGCTTAGACTGGGGATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
31447881 CTCCGTATGC
1 ATCCGTATGC
31447891 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:31448249 original size:26 final size:25
Alignment explanation
Indices: 31448213--31448269 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
31448203 CTTGGTCCGA
31448213 TCCG-ATATTAGAC-TGGGAATGAAC
1 TCCGTATATTAGACAT-GGAATGAAC
*
31448237 TCCGTATACTTAGACATGGAATGATC
1 TCCGTATA-TTAGACATGGAATGAAC
31448263 TCCGTAT
1 TCCGTAT
31448270 GCCTAAGCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 4 0.14
25 3 0.10
26 21 0.72
27 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (25 bp):
TCCGTATATTAGACATGGAATGAAC
Found at i:31448716 original size:26 final size:26
Alignment explanation
Indices: 31448687--31448739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31448677 CCGATCCGAT
31448687 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
31448713 CTTAGATTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31448739 C
1 C
31448740 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31449117 original size:26 final size:26
Alignment explanation
Indices: 31449066--31449118 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31449056 CTGATCTGAT
**
31449066 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31449092 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31449118 C
1 C
31449119 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31449279 original size:26 final size:26
Alignment explanation
Indices: 31449250--31449302 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31449240 CCGGTCTGAT
*
31449250 CTTAGATTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
31449276 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
31449302 C
1 C
31449303 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:31449653 original size:26 final size:26
Alignment explanation
Indices: 31449602--31449654 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31449592 ACGGTCCGAT
* *
31449602 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31449628 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31449654 C
1 C
31449655 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31449739 original size:352 final size:354
Alignment explanation
Indices: 31449091--31449915 Score: 818
Period size: 352 Copynumber: 2.3 Consensus size: 354
31449081 AACTCTGTAT
*
31449091 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAA
* * ** * * *
31449156 CCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCAGTCCCCCCTGTAAGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGACCAGCCCAGT--CCCCTGTAAGCTGCCAATCC
* * * *
31449221 TACTGTCGTAACCCTCGATCCGGTCTGATCTTAGATTGGGAATAAACTCTGTATGCTTAGACTGG
129 TACTGTCGCAACCCTCGATACGGTCCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGG
** * * * *
31449286 GGATGAACTCTGTATGCCTAAGTCAACCCATGAAGCGAGCATACGGCCACTCAGCCAACTGAAGA
194 GGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATACGGCCACTCAGCCAACCGAAAA
* * *
31449351 GGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGCTGA
259 GGCTGACCGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGCTGA
31449416 TCCCACTGCCATAACCCTTGGTCCGGGTGGG
324 TCCCACTGCCATAACCCTTGGTCCGGGTGGG
* **
31449447 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGTGCTC
1 GCTTAGACATGGAATGAACTC-CATATGCCTAAGCCAACCCACGAAATGAG-CATGCGGGCACTC
* * * * * * ** *
31449510 AGCTGGCCGGAGAGGTAGAATGCGCATGCCAAGGATCAGCCCAGT-CCCT-TCCGCTGCCAATCT
64 AACCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGACCAGCCCAGTCCCCTGTAAGCTGCCAATCC
* * * *
31449573 TGCTGTCGCAACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGATTG
129 TACTGTCGCAACCCTCGATACGGTCCGATCTTAGACTGGGAATAAACTCT-GTATGCTTAGACTG
* ** * * *
31449637 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTGCGAG-CGCTCAGCCGACCGAA
193 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATACG-GCCACTCAGCCAACCGAA
* ** * * *
31449701 AAGGCTTATTGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCTCTTTACATGCTG-T
257 AAGGCTGACCGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGCT
* * * ** ** *
31449765 CGATCCCGCTACCGATCTTGCTACCACAACCCTCGATTTGACTGTG
322 -GAT----C--CC-A-C-TG---CCATAACCCTTGGTCCGGGTGGG
* * * * *
31449811 ACTTAGACAGGGAATGAACTCCGTAAGCCTAAGCCAACCCACGGAATGAGCATGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAA
* * * * * *
31449876 TCGGGCGGAGAGGCAAAATGCGTAAGCCAAGGATCAGCCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGACCAGCCC
31449916 GATCCCTCAC
Statistics
Matches: 378, Mismatches: 72, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
351 2 0.01
352 170 0.45
353 5 0.01
355 1 0.00
356 90 0.24
357 1 0.00
358 2 0.01
359 1 0.00
360 1 0.00
361 2 0.01
363 1 0.00
364 101 0.27
365 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (354 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAA
CCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGACCAGCCCAGTCCCCTGTAAGCTGCCAATCCTA
CTGTCGCAACCCTCGATACGGTCCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGG
ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATACGGCCACTCAGCCAACCGAAAAGG
CTGACCGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGCTGATC
CCACTGCCATAACCCTTGGTCCGGGTGGG
Found at i:31450486 original size:26 final size:26
Alignment explanation
Indices: 31450450--31450502 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31450440 CTGATCTGAT
*
31450450 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31450476 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31450502 C
1 C
31450503 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31451191 original size:159 final size:157
Alignment explanation
Indices: 31450857--31451293 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 157
31450847 AACTTCTTAT
* * *
31450857 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGAGAGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* * * * * **
31450922 TCG-TCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTTACATGCTGTTGATCC
66 CCGATCGGAGAGG-AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTACATGCTGTCAATCC
* * *
31450986 TGCTACTACAACCCTCAGTCTGATCCAA
130 AGCGACCACAACCCTCAGTCTGATCCAA
* * * * * *
31451014 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCA
* * *
31451078 GCCGATCGGAGAGGTGTAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTGCATGCTGTCAAT
65 GCCGATCGGAGAGGAG-AATGCGCAAGCCGGGGATCGACCCGATCCCCCT-TACATGCTGTCAAT
***
31451143 CCAG-GAGCCACAACCCTCAGTCTGATCGGG
128 CCAGCGA-CCACAACCCTCAGTCTGATCCAA
* * * * * * * *
31451173 GCTTAGACATTGAATGAACTCCCTATGCCCAAGCCAAGCCATTAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* *** *
31451238 CCGACCGGAGAGGCAGAATTTTCAAGCCGGGGATCGACCCGGTCCCCCTTAC-TGCT
66 CCGATCGGAGAGG-AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTACATGCT
31451294 ACAACCTTCG
Statistics
Matches: 228, Mismatches: 45, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 60 0.26
158 41 0.18
159 124 0.54
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
CCGATCGGAGAGGAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTACATGCTGTCAATCCA
GCGACCACAACCCTCAGTCTGATCCAA
Found at i:31452434 original size:26 final size:26
Alignment explanation
Indices: 31452393--31452445 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31452383 CCGATCTGAT
31452393 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* * *
31452419 CTTAGACTGGGGATGAAGTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
31452445 C
1 C
31452446 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:31452941 original size:26 final size:26
Alignment explanation
Indices: 31452890--31452942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31452880 CTGGTTCAAT
* *
31452890 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31452916 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31452942 C
1 C
31452943 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31454971 original size:197 final size:197
Alignment explanation
Indices: 31454622--31454978 Score: 441
Period size: 197 Copynumber: 1.8 Consensus size: 197
31454612 ATCTGGTTTA
* * * *
31454622 ATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGGATGAACTCTGTATGCTTAAGTCAAC
1 ATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * * **
31454687 CCATAAAATGAGTGTGCGGGTGGTCAGAAGGTCGGAGAGGCAGAATACGTAAGCCAGGGATCGGT
66 CCATAAAACGAGCATGCGGGCGCTCAGAAGGCCGGAGAGGCAGAATACGTAAGCCAGGGACCGCC
* * *
31454752 TCAGTGCCCCCTTGCATGCTGTCGATCCTGGTGCTAGTCCTGCTACCGCCAACCTCGATCCAATC
131 TCAGTCCCCCCCTGCATGCTGTCAATCCTGGTGCTAGTCCTGCTACCGCCAACCTCGATCCAATC
31454817 CG
196 CG
* * * *
31454819 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT-TGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACACCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
31454883 CCCATGAAACGAGCATGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGTAAGCC-GAGGACCG
65 CCCATAAAACGAGCATGCGGGCGCTCAGAAGGCCGGAGAGGCAGAATACGTAAGCCAG-GGACCG
*
31454947 ACCT-AGTCCCCCCCTGCGTGCTGTCAATCCTG
129 -CCTCAGTCCCCCCCTGCATGCTGTCAATCCTG
31454979 CTATCACAAC
Statistics
Matches: 132, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
196 1 0.01
197 129 0.98
198 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (197 bp):
ATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CCATAAAACGAGCATGCGGGCGCTCAGAAGGCCGGAGAGGCAGAATACGTAAGCCAGGGACCGCC
TCAGTCCCCCCCTGCATGCTGTCAATCCTGGTGCTAGTCCTGCTACCGCCAACCTCGATCCAATC
CG
Done.