Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 342 of 402
Found at i:31455201 original size:158 final size:159
Alignment explanation
Indices: 31454846--31455348 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 159
31454836 AACTCCGTAT
*
31454846 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * *
31454911 CTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGACCGACCTAGTCCCCCCCTGCGTGCTGTCAATC
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGACCGACCTAGTCCCCCCCTACGTGCTGTCAATC
* * * ** *
31454976 CTGCTATCACAACCCTTGGTTTGGTCCGA
131 CCGCTACCACAACCCTCGGTCCGGTCAGA
* * * * * * * * * *
31455005 TCTTAGACAGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTTCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * * * * * * *
31455070 CCGATCGGAGAGGCATAATGCGTAAGTCGAGGATCGGCCTGGT-CCCCTCTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGACCGACCTAGTCCCCCCCTACGTGCTGTCAATC
* *
31455134 CCGCTGCCACAACCCTCGGTCCGG-CTAGG
131 CCGCTACCACAACCCTCGGTCCGGTC-AGA
* * ** * * *
31455163 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * * * * * * * * * *
31455228 CC-AGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCC-CGAT-CCCCCCTGCATGCTATCGA
66 CCGA-CCGGAGAGGCAGAATGCGTAAGCCGAGGACCGACCTAG-TCCCCCCCTACGTGCTGTCAA
* * * *
31455290 TCCTGCTGCCACAACCCTCGGTCTGGTCTGA
129 TCCCGCTACCACAACCCTCGGTCCGGTCAGA
* *
31455321 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31455349 TTAGACTAGG
Statistics
Matches: 275, Mismatches: 64, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.01
158 181 0.66
159 90 0.33
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGACCGACCTAGTCCCCCCCTACGTGCTGTCAATC
CCGCTACCACAACCCTCGGTCCGGTCAGA
Found at i:31455351 original size:26 final size:26
Alignment explanation
Indices: 31455322--31455374 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31455312 CTGGTCTGAT
* *
31455322 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
31455348 CTTAGACTAGGGATAAACTCCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
31455374 C
1 C
31455375 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:31456327 original size:26 final size:26
Alignment explanation
Indices: 31456283--31456338 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
31456273 CTGGTCTGAT
31456283 CTTAGACTGAGAATAAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
* * *
31456309 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
31456335 CTTA
1 CTTA
31456339 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:31456614 original size:197 final size:196
Alignment explanation
Indices: 31456251--31456635 Score: 431
Period size: 197 Copynumber: 2.0 Consensus size: 196
31456241 GTGCTGTTGA
* ** *
31456251 TCCTGCTCTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATAAACTCCGTATGCTTAGAC
1 TCCTGCTCTCGCAACCCTCAGTCCAGTCTGATCTTAGACTGAGAATAAACTACGTATGCTTAGAC
* * * * * *
31456316 TGGGGATGAACTCCGTATGCTTAAGTCAACCCACCGAACGAGCGTGCGGGCGGTCAGCCGGTCGG
66 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACCGAACGAGCGTGCGGGCGCTCAGCCGATCGA
* ** * * * ** *
31456381 AGAGGTAGAATGCGTAAGCTGCGTATCGGTCCGATCCCCACCTGCT-TGCTGTCGATCCTACTAC
131 AGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCC-CATG-TGTGCTGTCGATCCTACTAC
31456445 TGG
194 TGG
* *
31456448 TCCTGCTGC-CGCAACCCTCAGTCCAGTCTGATGC-TAGACTGGGAATGAACTACGTATGCTTAG
1 TCCTGCT-CTCGCAACCCTCAGTCCAGTCTGAT-CTTAGACTGAGAATAAACTACGTATGCTTAG
* * * *
31456511 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAATGAGCGTGTGGGTGCTTAGCCGA
64 AC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACCG-AACGAGCGTGCGGGCGCTCAGCCGA
*
31456574 TCGAAGAGGCAGAATGTACAAGCCGAGGA-CTGACCCGATCCCCCATGTGTGCTGTCGATCCT
127 TCGAAGAGGCAGAATGCACAAGCCGAGGATC-GACCCGATCCCCCATGTGTGCTGTCGATCCT
31456636 GCTGCTGCAA
Statistics
Matches: 156, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
195 1 0.01
196 19 0.12
197 133 0.85
198 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (196 bp):
TCCTGCTCTCGCAACCCTCAGTCCAGTCTGATCTTAGACTGAGAATAAACTACGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACCGAACGAGCGTGCGGGCGCTCAGCCGATCGA
AGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCATGTGTGCTGTCGATCCTACTACTG
G
Found at i:31457950 original size:159 final size:158
Alignment explanation
Indices: 31457566--31458068 Score: 397
Period size: 158 Copynumber: 3.2 Consensus size: 158
31457556 AACTCCATAT
* * * * * *
31457566 GCTTAGACATGGAAGGAACTCTGTATGCCTAAGCTAACCCATGAAACGAGCATGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * **
31457631 CCGACAGGAGAGGCAAAATGCATAAGTCAGAGATCAGCCTGGTCCCCCCTACGTGTTGTCGATCC
66 CCGACAGAAGAGGCAAAATGCACAAGTCAGAGATCAGCCCGGTCCCCCCTACGTGCTACCGATCC
* **
31457696 TGCTACTGCAACCCTCAGTCTGGTCTGA
131 CGCTACCACAACCCTCAGTCTGGTCTGA
* ** * * * * *
31457724 TCTTAGAC-TAGGAATGAACTCCGTATGGATAAGTCAACCCACGAAACGAGCGTACAGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
** * * * *
31457788 GCCGATTGAAGAGGCATATTGCACAAG-CTGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGA
65 GCCGACAGAAGAGGCAAAATGCACAAGTC-AGAGATCAGCCCGGTCCCCC-CTACGTGCTACCGA
* * *
31457852 TCCCGCTGCCACAACCCTCGGTCTGG-CTGGG
128 TCCCGCTACCACAACCCTCAGTCTGGTCT-GA
* *
31457883 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGTGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCA
* * ** * ** * * * ** * **
31457947 GCCGGCCGGGGAGGCAGAATGCGTAAGTCGGGGATCGGTTCGATCCCCCCTGTGTGCTACCGATC
65 GCCGACAGAAGAGGCAAAATGCACAAGTCAGAGATCAGCCCGGTCCCCCCTACGTGCTACCGATC
* * * * * *
31458012 CTGCTATCGCAACCCTC-GATCCGATCCGA
130 CCGCTACCACAACCCTCAG-TCTGGTCTGA
*
31458041 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
31458069 TTAGACTAGG
Statistics
Matches: 269, Mismatches: 66, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
157 4 0.01
158 144 0.54
159 119 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGACAGAAGAGGCAAAATGCACAAGTCAGAGATCAGCCCGGTCCCCCCTACGTGCTACCGATCC
CGCTACCACAACCCTCAGTCTGGTCTGA
Found at i:31458071 original size:26 final size:26
Alignment explanation
Indices: 31458042--31458094 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31458032 CCGATCCGAT
31458042 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
31458068 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31458094 C
1 C
31458095 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31458427 original size:26 final size:26
Alignment explanation
Indices: 31458398--31458450 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31458388 CTGATCCGAT
31458398 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
31458424 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
31458450 C
1 C
31458451 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:31458451 original size:356 final size:356
Alignment explanation
Indices: 31457798--31458654 Score: 1266
Period size: 356 Copynumber: 2.4 Consensus size: 356
31457788 GCCGATTGAA
* * * * * * *
31457798 GAGGCATATTGCACAAGCTGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGCCA
1 GAGGCATAATGCATAGGCTGGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCTGCCA
* * *
31457863 CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
66 CAACCCTCGGTCTGACTGGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * ** * *
31457928 ACAGGCGTGCGGGTGCTTAGCCGGCCGGGGAGGCAGAATGCGTAAGTCGGGGATCGGTTCGATCC
131 ACGGGCGTGCGGGCGCTTAGCCGACAGGGGAGGCAAAATGCGTAAGCCAAGGATCGGCTCAATCC
31457993 CCCCTGTGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGA
196 CCCCTGTGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGA
* **
31458058 ACTCCGTATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTACG
261 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACG
31458123 GGCACTTAACCGACCGGAGAGGTTGGTCGGT
326 GGCACTTAACCGACCGGAGAGGTTGGTCGGT
* *
31458154 GAGGCATAATGCATAGGCTGGGGATCAGCCCAGTCCCTCTCTGCATGCTACCGATCCTGCTGGCA
1 GAGGCATAATGCATAGGCTGGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCTGCCA
*
31458219 CAACCCTCGGTCTGACTGGGGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAA
66 CAACCCTCGGTCTGACTGGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAA
* *
31458284 ACGGGCGTGCGGGCGCTTAGCCGATAGGGGAGGTAAAATGCGTAAGCCAAGGATCGGCTCAATCC
131 ACGGGCGTGCGGGCGCTTAGCCGACAGGGGAGGCAAAATGCGTAAGCCAAGGATCGGCTCAATCC
* * * * *
31458349 CCCCTGTGTGTTACCGATCTTGCTATCGCAACCCTTGATCTGATCCGATCTTAGACTGGGAATGA
196 CCCCTGTGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGA
* *
31458414 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGGAACAAGCGTGCG
261 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACG
* * **
31458479 GGTAGTTGGCCGACCGGAGAGGTTGGTCGGT
326 GGCACTTAACCGACCGGAGAGGTTGGTCGGT
* * *
31458510 AAGGCATAATGCATAGGCTGAGGATCAACCCAGTCCCCCTCTGCATGCTACCAAGATCCTGCTGC
1 GAGGCATAATGCATAGGCTGGGGATCAGCCCAGTCCCCCTCTGCATGCTACC--GATCCTGCTGC
* ** *
31458575 CACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATCAACTCCGTATGCCTGGGCCAACCCATG
64 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACG
*
31458639 AAACGAGCGTGCGGGC
129 AAACGGGCGTGCGGGC
31458655 ATTCAGTCGA
Statistics
Matches: 450, Mismatches: 49, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
356 366 0.81
357 56 0.12
358 28 0.06
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (356 bp):
GAGGCATAATGCATAGGCTGGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGATCCTGCTGCCA
CAACCCTCGGTCTGACTGGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAA
ACGGGCGTGCGGGCGCTTAGCCGACAGGGGAGGCAAAATGCGTAAGCCAAGGATCGGCTCAATCC
CCCCTGTGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGA
ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACG
GGCACTTAACCGACCGGAGAGGTTGGTCGGT
Found at i:31458806 original size:26 final size:26
Alignment explanation
Indices: 31458768--31458820 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31458758 CTGGTCTGAT
31458768 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
31458794 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
31458820 C
1 C
31458821 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31459298 original size:26 final size:26
Alignment explanation
Indices: 31459269--31459321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31459259 CCGGTTCGAT
*
31459269 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31459295 CTTAGACTGGGGATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31459321 C
1 C
31459322 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31460365 original size:26 final size:26
Alignment explanation
Indices: 31460336--31460386 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
31460326 TCCAATTTTT
31460336 ACTGGGAATGAACTCCGTATGCTTAG
1 ACTGGGAATGAACTCCGTATGCTTAG
*
31460362 ACTGGGGATGAACTCCGTATGCTTA
1 ACTGGGAATGAACTCCGTATGCTTA
31460387 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCTTAG
Found at i:31460475 original size:184 final size:183
Alignment explanation
Indices: 31460151--31460605 Score: 405
Period size: 184 Copynumber: 2.4 Consensus size: 183
31460141 CAAAATCTTA
* * **
31460151 TACTGGGAATGAACTTCATATGCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCATGA
1 TACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* * *
31460216 AACGAGCGTACGGCCGCTCAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATC
66 AACGAGCGTACGGCCGCTCAG-CAACCAGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGATC
* *
31460281 CCCTCTTGCGTGTTGTCGATCCTGTTGCCGCCACCTTCAGTCCGGTCCAATTTT
130 CCCTCTTGCGTGCTGCCGATCCTGTTGCCGCCACCTTCAGTCCGGTCCAATTTT
* * * *
31460335 TACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCTTAAGTCAACCCACA
1 TACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACA
* ** * * * * * * *
31460399 AAACGAGCGTGCGGGTGGTCAG-AAGGTCAGAGAGGCAGAATACGCAAGTCGGGGATCGGCTCGG
65 AAACGAGCGTACGGCCGCTCAGCAA--CCAGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGA
** * * *
31460463 T-CCCTCCTTGCGTGCTGCCGATCCTGCTGCTGGTCCTGCTGCC-ACAAGCCTCGGTCCGATCTG
128 TCCCCT-CTTGCGTGCTGCCGATCCTG-T--T-G-CC-GCCACCTTC-AGTC-CGGTCCAAT-T-
31460526 ATCT
182 -T-T
* * * *
31460530 TAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAGCCCAC
1 T--ACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* *
31460595 GAAACAAGCGT
64 AAAACGAGCGT
31460606 GCGGGCGTTT
Statistics
Matches: 216, Mismatches: 36, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
182 2 0.01
183 5 0.02
184 120 0.56
185 1 0.00
187 1 0.00
188 1 0.00
189 3 0.01
190 7 0.03
191 8 0.04
192 1 0.00
194 1 0.00
195 2 0.01
197 63 0.29
198 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (183 bp):
TACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
AACGAGCGTACGGCCGCTCAGCAACCAGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGATCC
CCTCTTGCGTGCTGCCGATCCTGTTGCCGCCACCTTCAGTCCGGTCCAATTTT
Found at i:31460557 original size:26 final size:26
Alignment explanation
Indices: 31460528--31460578 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31460518 CCGATCTGAT
31460528 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31460554 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
31460579 CCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31461128 original size:159 final size:158
Alignment explanation
Indices: 31460721--31461149 Score: 538
Period size: 159 Copynumber: 2.7 Consensus size: 158
31460711 TCTTAGATTA
* ** * * * * *
31460721 GGAATGAACTCCGTAT-CCTAAGTTAACCCACGAAACGAGCGTTCGGGCACTGAGCCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCGTGCGGGCACTCAGTCGGCCGGAG
* * * * * *
31460785 AGGCATAATGCGCAAGCTGAGGATCAACTCAGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
65 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
** *
31460850 AACCCTCAGTCTGGCTAGGGCTTAGACAT
130 AACCCTCAGTCCAGCTAGGGCTTAGAAAT
* * *
31460879 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGGGCGGGCGCTCAGTCGGCCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CGGCGTGCGGGCACTCAGTCGGCCGGAG
* * **
31460944 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGGTCTTGCTGCCAC
65 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
* *
31461009 AACCCTCGGTCCAGCTGGGGCTTAGAAAT
130 AACCCTCAGTCCAGCTAGGGCTTAGAAAT
*
31461038 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGCACTCAGTCGGCCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTGCGGGCACTCAGTCGGCCGGAG
* * * *
31461103 ATGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCT
65 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCT
31461150 ACCAATCATG
Statistics
Matches: 233, Mismatches: 35, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
158 22 0.09
159 210 0.90
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGCGTGCGGGCACTCAGTCGGCCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACA
ACCCTCAGTCCAGCTAGGGCTTAGAAAT
Found at i:31461223 original size:26 final size:26
Alignment explanation
Indices: 31461187--31461239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31461177 CCGATTTGAT
31461187 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
31461213 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31461239 C
1 C
31461240 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31461421 original size:26 final size:26
Alignment explanation
Indices: 31461383--31461435 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31461373 CCGATCCGAT
*
31461383 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31461409 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31461435 C
1 C
31461436 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31461902 original size:26 final size:26
Alignment explanation
Indices: 31461861--31461912 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31461851 CCGGTCCAAT
*
31461861 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31461887 CTTAGACTGCGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
31461913 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31462414 original size:159 final size:157
Alignment explanation
Indices: 31462047--31462531 Score: 510
Period size: 159 Copynumber: 3.1 Consensus size: 157
31462037 AGTCTTACTA
* * *
31462047 CCACAACCCTCGGT-TCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGATCT-GGTTGGGGTTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
31462111 CGAAACGAGCGTGCGGGCGCTCAGCAGGCCGAAGAGGCAAAATGCACAAGTCGGGGATCGACCTG
65 CGAAACGAGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCGCAAGTCAGGGATCGACCCG
** **
31462176 GTCCACCCTGTGTGCTGTCGATCCTGCTG
130 GTCC-CCCTACGTGCTGTCGATCCCACTG
* *** * * * * *
31462205 CCACAACCCTCGGTCTGGTT-CAATCTTAAACTAGGAATGAACTTCGTATGCATAAGTCAACCCA
1 CCACAACCCTCGATCTGGTTGGGGT-TTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
31462269 CGAAACGAGTGTGCGGGTGCTGAGCCGGTCGAAAAGGCATAATGTGCAAGCCAGGGATCGACCCG
65 CGAAACGAGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCGCAAGTCAGGGATCGACCCG
* *
31462334 ATCCCCTTCTACGTGCTGTCGGTCCCACTG
130 GTCCCC--CTACGTGCTGTCGATCCCACTG
* *
31462364 CCACAACCCTTGATCCT-GTTGGGGTTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGAT-CTGGTTGGGGTTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * *
31462428 CGAAACCG-GTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCAACCC
65 CGAAA-CGAGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCGCAAGTCAGGGATCGACCC
* ** **
31462492 GGTCCCCCTGCGTGCTACCGATCCTGCTG
129 GGTCCCCCTACGTGCTGTCGATCCCACTG
*
31462521 CCGCAACCCTC
1 CCACAACCCTC
31462532 AGTTCGGTCT
Statistics
Matches: 264, Mismatches: 56, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
157 27 0.10
158 107 0.41
159 125 0.47
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CCACAACCCTCGATCTGGTTGGGGTTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCGCAAGTCAGGGATCGACCCGG
TCCCCCTACGTGCTGTCGATCCCACTG
Found at i:31462596 original size:26 final size:26
Alignment explanation
Indices: 31462545--31462597 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31462535 TCGGTCTGAT
**
31462545 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
31462571 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
31462597 C
1 C
31462598 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:31463221 original size:158 final size:158
Alignment explanation
Indices: 31462902--31463511 Score: 552
Period size: 158 Copynumber: 3.9 Consensus size: 158
31462892 GTCCTTTTGT
* * * * * * * *
31462902 CACAACCCTTGGTCCGGTTCGATCTTAGAC-TGGGAATGAACTCCGTATGGCTAAGTCAACCCAC
1 CACAACCCTCGGTCTGGTTTG-GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * * **
31462966 G-AACGAGCGTGCGGGCACTGAGCAGGCCAGAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCG
64 GAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGA-CCCG
* * ** * * * *
31463029 GTCTCCCTCTGTGTGCTACCAGTCCCGCTGC
128 ATCCCCCTCTGCATGCTGCCAGTCTCACTAC
* *
31463060 CACAACCCTCGGTCCGGTTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCTGGTT-TGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* * * * * * * * * * **
31463125 AAACGGGCTTACGGGTGCTCAACCGGCCGAAGAGGCAGAATGGGTAAGCCGATGATCGACGTGAT
65 AAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGAT
*
31463190 CCCCC-CTGCATGCTG-TAGATC-CTACTAC
130 CCCCCTCTGCATGCTGCCAG-TCTC-ACTAC
* * **
31463218 CACAACCCTCGGTCTGGTTTGCTCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTTAACCCAT
1 CACAACCCTCGGTCTGGTTTG-GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * *
31463282 G-AACGAGCGTGCGAGCGCTGAGCTGGTCGGAGAGGCATAATGCGCAAGCCAAGGATCGACCCGA
64 GAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGA
* * *
31463346 TCCCCCTCTGCATGTTGCCAGTCTCGCTGC
129 TCCCCCTCTGCATGCTGCCAGTCTCACTAC
* *
31463376 CACAACCCTCGGTCTGGCTATGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATG
1 CACAACCCTCGGTCTGG-TTTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* * ** *
31463441 AAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGAT
65 AAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGAT
31463506 CCCCCT
130 CCCCCT
31463512 GCGTGCTACC
Statistics
Matches: 364, Mismatches: 74, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
157 59 0.16
158 186 0.51
159 118 0.32
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CACAACCCTCGGTCTGGTTTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
AACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATC
CCCCTCTGCATGCTGCCAGTCTCACTAC
Found at i:31463355 original size:316 final size:315
Alignment explanation
Indices: 31462902--31463582 Score: 869
Period size: 316 Copynumber: 2.2 Consensus size: 315
31462892 GTCCTTTTGT
* * *
31462902 CACAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACG
1 CACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* ** *
31462967 AACGAGCGTGCGGGCACTGAGCAGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTC
66 AACGAGCGTGCGAGCACTGAGCAGGCCAGAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATC
* ** * *
31463032 TCCCTCTGTGTGCTACCAGTCCCGCTGCCACAACCCTCGGTCCGGTTGTGGCTTAGACATGGAAT
131 CCCCTCTGCATGCTACCAGTCCCGCTGCCACAACCCTCGGTCCGGCTATGGCTTAGACATGGAAT
* * *
31463097 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGTGCTCAACCGGCCGAAGAGGCA
196 GAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGTACGGGCGCTCAACCGGCCGAAGAGGCA
* * * ** **
31463162 GAATGGGTAAGCCGATGATCGACGTGATCCCCCCTGCATGCTGTAGATCCTACTAC
261 GAATGCGCAAGCCGAGGATCGACCCGAT-CCCCCTGCATGCTACAGATCCTACTAC
* * * * *
31463218 CACAACCCTCGGTCTGGTTTGCTCTTAGACTGAGAATGAACTCCGTATGCCTAAGTTAACCCATG
1 CACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
31463283 AACGAGCGTGCGAGCGCTGAGCTGGTCGGAGAGGCATAATGCGCAAGCCAAGGATC-GACCCGAT
66 AACGAGCGTGCGAGCACTGAGCAGGCCAGAGAGGCATAATGCGCAAGCCAAGGATCAG-CCCGAT
* * * *
31463347 CCCCCTCTGCATGTTGCCAGTCTCGCTGCCACAACCCTCGGTCTGGCTATGGCTTAGACATGGAA
130 CCCCCTCTGCATGCTACCAGTCCCGCTGCCACAACCCTCGGTCCGGCTATGGCTTAGACATGGAA
* * * * * *
31463412 TGAACTCCCTATGCCTAAACCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGC
195 TGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGTACGGGCGCTCAACCGGCCGAAGAGGC
* * * * * *
31463477 AGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTGCGTGCTACCGATCCTGCTAC
260 AGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTGCATGCTACAGATCCTACTAC
** * * *
31463533 CGTAACCCTCGATCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGC
1 CACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
31463583 TTAGACTAGG
Statistics
Matches: 309, Mismatches: 55, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
315 65 0.21
316 244 0.79
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (315 bp):
CACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AACGAGCGTGCGAGCACTGAGCAGGCCAGAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATC
CCCCTCTGCATGCTACCAGTCCCGCTGCCACAACCCTCGGTCCGGCTATGGCTTAGACATGGAAT
GAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGTACGGGCGCTCAACCGGCCGAAGAGGCA
GAATGCGCAAGCCGAGGATCGACCCGATCCCCCTGCATGCTACAGATCCTACTAC
Found at i:31463585 original size:26 final size:26
Alignment explanation
Indices: 31463556--31463608 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31463546 CTGGTCCGAT
*
31463556 CTTACACT-GGGAATGAACTCCGTATG
1 CTTACACTAGGG-ATGAACTCCATATG
* *
31463582 CTTAGACTAGGGATGAATTCCATATG
1 CTTACACTAGGGATGAACTCCATATG
31463608 C
1 C
31463609 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGGATGAACTCCATATG
Found at i:31465618 original size:158 final size:157
Alignment explanation
Indices: 31465140--31465640 Score: 397
Period size: 158 Copynumber: 3.2 Consensus size: 157
31465130 ACTTTGTATG
* * *
31465140 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCATACGGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * * * ** * * *
31465204 -CTGACTGGAGAGGCAAAATGCGTAAG-CTGGGGATTGACCCAGTCCTTCTTGCGTGCTATCAAT
65 TC-AACTGGAGAGGCAAAATGCGTAAGTC-GGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
** * * * **
31465267 CTGGCTGCTGCAACCTTCGGTCCGATCTAAT
128 CTCACTAC-GCAACCATCGGTCCGGTCCGAT
* * ** * * *
31465298 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTG-TGGCGCTGAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGT
*** * * * * * * *
31465362 -TGGTCGGAGAAGCATAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGTC
66 CAACT-GGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATC
* * * * * **
31465426 TCCCTGCCACAACCCTCGGTCCGG-CTGGGG
129 TCACT-ACGCAACCATCGGTCCGGTC-CGAT
* * * *
31465456 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCCTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * *
31465520 TCAACTGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCTGCTTGCTGTTGATC-
65 TCAACTGGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCT
31465584 CTACTAACGCAACCATCGGTCCGGTCCGAT
130 C-ACT-ACGCAACCATCGGTCCGGTCCGAT
31465614 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
31465641 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 69, Indels: 26
0.73 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 39 0.15
158 172 0.66
159 48 0.18
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGT
CAACTGGAGAGGCAAAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCTC
ACTACGCAACCATCGGTCCGGTCCGAT
Found at i:31465643 original size:26 final size:26
Alignment explanation
Indices: 31465614--31465666 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31465604 CCGGTCCGAT
31465614 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
31465640 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31465666 C
1 C
31465667 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31466886 original size:159 final size:158
Alignment explanation
Indices: 31466384--31466878 Score: 453
Period size: 159 Copynumber: 3.1 Consensus size: 158
31466374 ACTCCGTATG
* * * * *
31466384 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGG-CCTTAGT
** * * * * * *
31466448 CTGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACCTGGTCCCCC-CTGCATGCTGTTGATC
65 C-GACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
*
31466512 CTGCTGCTGCAACCCTCGGTCCGGTCTGAT
129 CTGCTGCAGCAACCCTCGGTCCGGTCTGAT
* * * * * * * *
31466542 CTTAGAC-TGGGAATGAATTCCATATGCATAAGTCAACCCATGAAATGAGCATGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCCTT-AG
* * * * * * * * *
31466606 CTAGTCGA-AGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCTTTTACGTGCTGTCGGT
64 -TCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
** ** * **
31466670 CCCACTGCAATAACCCTCGGTCTGG-CTGGGG
128 CCTGCTGCAGCAACCCTCGGTCCGGTCT-GAT
* *
31466701 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCACTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGC-CTTAGT
* * *
31466766 CGACCAGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
65 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * **
31466831 TGCTACCGCAACCCTCAATCCGGTCTGAT
130 TGCTGCAGCAACCCTCGGTCCGGTCTGAT
31466860 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
31466879 ATGTATGCTT
Statistics
Matches: 257, Mismatches: 69, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
157 2 0.01
158 88 0.34
159 162 0.63
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCCTTAGTC
GACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTGCAGCAACCCTCGGTCCGGTCTGAT
Found at i:31466911 original size:26 final size:26
Alignment explanation
Indices: 31466860--31466912 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31466850 CCGGTCTGAT
**
31466860 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACATATG
* *
31466886 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
31466912 C
1 C
31466913 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:31467702 original size:26 final size:26
Alignment explanation
Indices: 31467666--31467718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31467656 CCGGTCTGAT
*
31467666 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31467692 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31467718 C
1 C
31467719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31474746 original size:26 final size:26
Alignment explanation
Indices: 31474710--31474765 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
31474700 TCGGTCTAAT
31474710 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31474736 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31474762 CTTA
1 CTTA
31474766 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31475498 original size:159 final size:157
Alignment explanation
Indices: 31475097--31475507 Score: 382
Period size: 158 Copynumber: 2.6 Consensus size: 157
31475087 GATCTTAAAT
* **
31475097 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGTCGACCGG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGAATGG
* * * * * *
31475162 AGAGGCAGAATGTGCAAGTCGAGGATTGGATCGGTACCCGCCAGTATGCTGTCGATCCTACTGCC
66 AGAGGCAGAATGCGCAAGCCGAGGA-TCGACCAGTACCCGCCAGTATGCTGACGATCCTACTGCC
* * * * *
31475227 GCAACCTCGGTCTGGTTTGATCTTAGAT
130 ACAACCTCGGTCTGGCTGGAGCTTAGAA
* * * * ** * *
31475255 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTACGGGCACTGAGTCG-ATCA
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGAAT-G
* * * * ** * *
31475319 GATAGGCATAATGCACAAGCCGAGGATCGACCCAGT-CCC-TCTTTACGTGCTGACGGTCCTGCT
65 GAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCAGTACCCGCCAGTA--TGCTGACGATCCTACT
*
31475382 GCCACAACCCTCGGT-TCGGCTGGGGCTTAGACA
127 GCCACAA-CCTCGGTCT-GGCTGGAGCTTAGA-A
* *
31475415 T-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGAATGG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGAATGG
* * * *
31475479 AGAGGTAGGATGCGTAAGCCGGGGATCGA
66 AGAGGCAGAATGCGCAAGCCGAGGATCGA
31475508 ACGGGTGCTC
Statistics
Matches: 197, Mismatches: 48, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.02
157 6 0.03
158 96 0.49
159 89 0.45
160 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.29, T:0.20
Consensus pattern (157 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCGAATGG
AGAGGCAGAATGCGCAAGCCGAGGATCGACCAGTACCCGCCAGTATGCTGACGATCCTACTGCCA
CAACCTCGGTCTGGCTGGAGCTTAGAA
Found at i:31476420 original size:21 final size:21
Alignment explanation
Indices: 31476380--31476429 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
31476370 AAGGATCGGC
31476380 CCGGTCCCCCTCGGCATGCTG
1 CCGGTCCCCCTCGGCATGCTG
* * **
31476401 TCGGTCCCCCTCTGTGTGCTG
1 CCGGTCCCCCTCGGCATGCTG
31476422 CCGGTCCC
1 CCGGTCCC
31476430 ACTGCCAGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.02, C:0.46, G:0.28, T:0.24
Consensus pattern (21 bp):
CCGGTCCCCCTCGGCATGCTG
Found at i:31476645 original size:26 final size:26
Alignment explanation
Indices: 31476616--31476668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31476606 CCGATCTGAT
31476616 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31476642 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31476668 C
1 C
31476669 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31478421 original size:159 final size:156
Alignment explanation
Indices: 31478160--31478654 Score: 489
Period size: 159 Copynumber: 3.1 Consensus size: 156
31478150 GGCTTAGACA
* * * * * ***
31478160 TGGAATGAACTCTGTATGCCTAAGCCTACCCATAAAACGAGCGCATGGGTGCTCAGCCAACCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGCTGGCCGGA
* * * * *
31478225 GAGGCAGAAAGCGCAAGCCGTGGATTGGCTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGTCA
66 GAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCCA
31478290 CAACCTTCAGTCTGGTCCGATCTTAGAT
131 CAA-CTTC-GTCTGGTCCGATCTTAGAT
* * * **
31478318 TGGTAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCTGGCCAA
1 TGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGCTGGCCGG
* * * * * * * *
31478383 AGAGGCATAATGCACAAGTCGGGGATCGGTTCGATCCCCCTCTGCATGCT-TCCGATCCCGTTGC
65 AGAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCCCCCTGCGTGCTGT-CGATCCTGCTGC
*
31478447 CACAAC-TC-TC-GGTCCGACTGGGGCTTAGACA
129 CACAACTTCGTCTGGTCCGA-T----CTTAGA-T
* * *
31478478 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAGCTGGCCGGA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGCTGGCCGGA
* * * * *
31478543 GAGGCAGAATGCGCAAGCCAGGGATCGATCCGGT-CCCCCCTGTGAGCTGTCGATCCTGCTGCCG
66 GAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCC-
*
31478607 A-AATGTTCGGTCTGGTCCGATCTTAGAT
130 ACAA-CTTC-GTCTGGTCCGATCTTAGAT
*
31478635 TGGGAATGAACTCCATATGC
1 T-GGAATGAACTCCGTATGC
31478655 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 51, Indels: 32
0.76 0.14 0.09
Matches are distributed among these distances:
154 7 0.03
155 3 0.01
157 3 0.01
158 51 0.19
159 191 0.71
160 5 0.02
162 3 0.01
163 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGCTGGCCGGA
GAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCCA
CAACTTCGTCTGGTCCGATCTTAGAT
Found at i:31478664 original size:26 final size:26
Alignment explanation
Indices: 31478628--31478680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31478618 CTGGTCCGAT
*
31478628 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31478654 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
31478680 C
1 C
31478681 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31479773 original size:170 final size:171
Alignment explanation
Indices: 31479375--31479777 Score: 438
Period size: 171 Copynumber: 2.4 Consensus size: 171
31479365 AACTCCATAT
* * *
31479375 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
*
31479440 CCGGCCAGAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTGCATGCTGCCAATC
66 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTGCATGCTGCCAATC
* * *
31479505 CCACTGCCGGTCTTGCTGCCACAACCCTCAGTCCGGCTTGG
131 CCACTGCCGGTCTTGCTACCACAACCCTCAGTCCGGCTCGA
* ** *
31479546 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAG
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * ** * * *
31479611 CCGGGC-GAAGGGGCAGAATGCGCAAGTTGGGGATCAGCCCGATCCCCC-CTGCGTGCTGCCGAT
66 CCGGCCAG-AGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTGCATGCTGCCAAT
** * ** * *
31479674 CCTGCTGCTGGTCTTGCTACCGTAACCCT-TGATCC-GATCCGA
130 CCCACTGCCGGTCTTGCTACCACAACCCTCAG-TCCGGCT-CGA
* * * * ** *
31479716 TCTTAGAC-TGAGAATGAACTTCGTATGCCAAAGTCAACCCACAAAACGAGTGTGCGGGCGCT
1 GCTTAGACACG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
31479778 GAGTCGATCT
Statistics
Matches: 192, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
169 4 0.02
170 91 0.47
171 97 0.51
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (171 bp):
GCTTAGACACGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTGCATGCTGCCAATC
CCACTGCCGGTCTTGCTACCACAACCCTCAGTCCGGCTCGA
Found at i:31479973 original size:159 final size:158
Alignment explanation
Indices: 31479717--31480010 Score: 333
Period size: 159 Copynumber: 1.9 Consensus size: 158
31479707 CCGATCCGAT
* * * * * *
31479717 CTTAGACTGAGAATGAACTTCGTATGCCAAAGTCAACCCACAAAACGAGTGTGCGGGCGCTGAGT
1 CTTAGACTGAGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGT
* * ** * * *
31479782 CGATCTGAAAGGAAAAATGTGCAAGCCAGGGATCGACTCGGTCCCCCTCTACGTGCTGTCGGTCC
66 CGAGCCGAAAGGAAAAATGCACAAGCCAGGGATCGACCCGGTCCCCC-CTACGTGCTATCGATCC
31479847 CGCTGCCAGAACCATCGGTTCAACTGGGG
130 CGCTGCCAGAACCATCGGTTCAACTGGGG
* * *
31479876 CTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAG
1 CTTAGAC-TGAGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
* * * * *
31479940 TCG-GCCGAAGAGGCAGAATGCACAAG-CAGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGAT
65 TCGAGCCGAA-AGGAAAAATGCACAAGCCA-GGGATCGACCCGGTCCCCCCTACGTGCTATCGAT
*
31480003 CCTGCTGC
128 CCCGCTGC
31480011 TGCAACCCTC
Statistics
Matches: 110, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
158 25 0.23
159 83 0.75
160 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGAGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGT
CGAGCCGAAAGGAAAAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCC
GCTGCCAGAACCATCGGTTCAACTGGGG
Found at i:31481480 original size:26 final size:26
Alignment explanation
Indices: 31481444--31481518 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
31481434 TCTGATCTTA
31481444 GACTGGGAATGAACTCTATATGCTTT
1 GACTGGGAATGAACTCTATATGCTTT
31481470 GACTGGGAATGAACTCTATATGCTTT
1 GACTGGGAATGAACTCTATATGCTTT
* *
31481496 GACTGGGGATGAACTCCATATGC
1 GACTGGGAATGAACTCTATATGC
31481519 CTATGTTAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
GACTGGGAATGAACTCTATATGCTTT
Found at i:31487127 original size:196 final size:196
Alignment explanation
Indices: 31486792--31487317 Score: 723
Period size: 196 Copynumber: 2.7 Consensus size: 196
31486782 TTCGGCTGGG
*
31486792 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
31486857 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATGGCCCTGGTCCCCCCTGCGTGCTATCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATGGCCCTGGTCCCCCCTGCATGCTATCGATCC
* * ** *
31486922 TGCTGCTGGTCTTACTGCCAAAACCCTCGGTCCGGTCTGATCTTAGATTGAGAATGAACTCTATA
131 TGCTGCTGGTCCTACTACCAAAACCCTCGGTCCGGTCCAATCTTAGATTGAGAATGAACTCCATA
31486987 T
196 T
*
31486988 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * *
31487053 CCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATGG-CCTCGGTCCCCCCTGCATGTTGTCGATC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATGGCCCT-GGTCCCCCCTGCATGCTATCGATC
* * ** *
31487117 CTGTTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCCAT
130 CTGCTGCTGGTCCTACTACCAAAACCCTCGGTCCGGTCCAATCTTAGATTGAGAATGAACTCCAT
31487182 AT
195 AT
* ** * *
31487184 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAACGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *** * * * *
31487249 CTGGCCAGAGAGGCAGAATACGCAAGCTATGGACTGGCCC-AGTCCCCCCTGCGTGCTGTCGAAC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGA-TGGCCCTGGTCCCCCCTGCATGCTATCGATC
31487313 CTGCT
130 CTGCT
31487318 CCTGCAACCC
Statistics
Matches: 290, Mismatches: 37, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
195 3 0.01
196 282 0.97
197 3 0.01
198 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATGGCCCTGGTCCCCCCTGCATGCTATCGATCC
TGCTGCTGGTCCTACTACCAAAACCCTCGGTCCGGTCCAATCTTAGATTGAGAATGAACTCCATA
T
Found at i:31487696 original size:26 final size:26
Alignment explanation
Indices: 31487660--31487712 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31487650 CTGGTCCGAT
*
31487660 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31487686 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31487712 C
1 C
31487713 CTATGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31488606 original size:26 final size:26
Alignment explanation
Indices: 31488577--31488629 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31488567 CCGATCCGAT
31488577 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCGTATG
31488603 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGGATGAACTCCGTATG
31488629 C
1 C
31488630 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTATG
Found at i:31489107 original size:158 final size:158
Alignment explanation
Indices: 31488747--31489122 Score: 359
Period size: 158 Copynumber: 2.4 Consensus size: 158
31488737 TGCCAATCCC
* * * * *
31488747 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTAT
1 GCTGCCGATCCTGCTGCCACAACCCTCGATCTGGTCCGATCTTAGAGTGGGAATGAACTCCCTAT
* * * * * *
31488812 GCCTAAGTCAACCCACGAAATGAAAGTGTGGGCACTGAACCTGTCGGAGAGGCATAATCGCAAGC
66 GCCTAAGCCAACCCACGAAACGAAAGTGCGGGCACTCAACCTGTCGGAGAGGCAGAATAGCAAGC
* **
31488877 CGGGGATCGACTTGGTCCCCCTCTGCGT
131 CGGGGATCGACCTGGTCCCCCTCTAAGT
* * * * * * * *
31488905 GCTTCCAATCCCGCTACCATAACCCTTGATCTGG--CTATGGCTTAGACGT-GGAATGACCTCCC
1 GCTGCCGATCCTGCTGCCACAACCCTCGATCTGGTCCGAT--CTTAGA-GTGGGAATGAACTCCC
*** ** **
31488967 TATGCCTAAGCCAACCCACGAAACGGTCGTGCGGGCGTTCAGTC-GATCGGAGAGGCAGAATGAG
63 TATGCCTAAGCCAACCCACGAAACGAAAGTGCGGGCACTCAACCTG-TCGGAGAGGCAGAAT-AG
31489031 CAAGCCGGGGATC-AGCCTGGTCCCCC-CTAAGT
126 CAAGCCGGGGATCGA-CCTGGTCCCCCTCTAAGT
* * **
31489063 GCTGCCGATCCTGCTGTCACAACCCTCGATCCGGTCCGATCTTAGTCTGGGAATGAACTC
1 GCTGCCGATCCTGCTGCCACAACCCTCGATCTGGTCCGATCTTAGAGTGGGAATGAACTC
31489123 TGCATGCTTA
Statistics
Matches: 168, Mismatches: 41, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
156 2 0.01
157 2 0.01
158 136 0.81
159 25 0.15
160 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (158 bp):
GCTGCCGATCCTGCTGCCACAACCCTCGATCTGGTCCGATCTTAGAGTGGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGAAAGTGCGGGCACTCAACCTGTCGGAGAGGCAGAATAGCAAGC
CGGGGATCGACCTGGTCCCCCTCTAAGT
Found at i:31490037 original size:26 final size:26
Alignment explanation
Indices: 31489996--31490048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31489986 TCGATCCGAT
*
31489996 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31490022 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
31490048 C
1 C
31490049 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31490336 original size:893 final size:879
Alignment explanation
Indices: 31488785--31490464 Score: 2087
Period size: 893 Copynumber: 1.9 Consensus size: 879
31488775 GTCTGGTCTG
* * *
31488785 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAAAGTGTGGGCACTGA
1 ATCTTAGATTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGCGGGCACTGA
* * * * * * *
31488850 ACCTGTCGGAGAGGCATAATCGCAAGCCGGGGATCGACTTGGTCCCCCTCTGCGTGCTTCCAATC
66 ACCGGTCAGAGAGGCATAATCGCAAGCCAGGGATCGACCTAGTCCCCCTCTACATGCTTCCAATC
* * * * *
31488915 CCGCTACCATAACCCTTGATCTGGCTATGGCTTAGACGTGGAATGACCTCCCTATGCCTAAGCCA
131 CCGCTACCACAACCCTTGATCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCA
* * *
31488980 ACCCACGAAACGGTCGTGCGGGCGTTCAGTCGATCGGAGAGGCAGAATGAGCAAGCCGGGGATCA
196 ACCCACGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGAGCAAGCCGGGGATCA
* * * * * *
31489045 GCCTGGTCCCCCCTAAGTGCTGCCGATCCTGCTGTCACAACCCTCGATCCGGTCCGATCTTAGTC
261 ACCCGATCCACCCTAAGTGCTGCCGATCCTGCTGTCACAACCCTCGATCCGATCCGATCTTAGAC
31489110 TGGGAATGAACTCTGCATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
326 TGGGAATGAACTCTGCATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * * * *
31489175 GAGCATACGGGCTCTTAGCTGATCGGAGAGACTAGTCGGAGAGGCCTATTACGTAAGTCGGGGAT
391 GAGCATACGGGCGCTTAGCCGACCGGAGAGACTA-TCGAAGAGGCATAATACGCAAGCCGAGGAT
* * * * *
31489240 CAGCCTGGTCCCCCTTTACGTGCTGTCGATCCCGTTACCGGTCCTGCTGCCACAACCCTCAGTTC
455 CAGCCTGGTCCCCCTCTACATGCTGTCGATCCCATTACCGGTCCTACTGCCACAACCCTCAGTCC
*
31489305 GACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACAGG
520 GACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGG
* * *
31489370 CACTCAACCGACCGCAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGATCCCCCCTATGTGCTG
585 CACTCAACCGACCGCAGAGGCAGAATGCGCAAGCTAGGGATTGGCCCGATCCACCCTACGTGCTG
** ** * * * * *
31489435 TTGATCCTACTGCTAGTCCTGTTGCCGCAACTATCGATCCGGTCTGGTCTTAGACTAGGAATGAA
650 CCGATCCTACTGCTAGTCCTACTACCGCAACCATCGATCCAGTCCGATCTTAGACTAGGAATGAA
* * * * * *
31489500 CTCCGTATGCTTGGACAT-GGAATGAACTCCGTATGCCTAACCCAACCCATGAAATGAACGTGCG
715 CTCCATATGCTTAGAC-TGGGAATGAACTCCATATGCCTAACCCAACCCACGAAACGAACGTACG
31489564 GGCGCTCAACCGACCGAAGAGGCAGAATGTCCAAGCTGGGGATTAGCCCAGTCCCTCCTACGTGC
779 GGCGCTCAACCGACCGAAGAGGCAGAATGTCCAAGCTGGGGATTAGCCCAGTCCCTCCTACGTGC
31489629 TGTCGATCCTGCTACCGTAATGCTCGATCCAATCCA
844 TGTCGATCCTGCTACCGTAATGCTCGATCCAATCCA
* * * **
31489665 ATCTTAGATTGGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGTGCTGA
1 ATCTTAGATTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGCGGGCACTGA
* * * * *
31489730 GCCGGTCAGAGAGGCATAATGCGTAAGCCAGGGATCGGCCTAGTCCCTCTCTACATGCTGT-CAG
66 ACCGGTCAGAGAGGCATAAT-CGCAAGCCAGGGATCGACCTAGTCCCCCTCTACATGCT-TCCAA
* * *
31489794 TCCCGCTACCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATACCTAAGC
129 TCCCGCTACCACAACCCTTGATCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGC
* * *
31489859 CAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGAT
194 CAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGAGCAAGCCGGGGAT
* * * * *
31489924 CAACCCGATCCACCCTGCA-TGCTGTCGATCTTGTTGCTGGTCCTGCTATCGCAACCTTC-AGTT
259 CAACCCGATCCACCCT-AAGTGCTGCCGATC------CT-G--CTG---TCACAACCCTCGA-TC
*
31489987 CGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GGAGATGAACTCCGTATGCCT
310 CGATCCGATCTTAGACTGGGAATGAACTCTGCATGCTTAGACTAGG-GATGAACTCCGTATGCCT
* * * * ** *
31490051 AAGTCAACCCATGGAATGAGCGTGTGGGCGCTTAGCCGACCGGAGAGGACGT-TCGAAGTGGCAT
374 AAGTCAACCCACGAAACGAGCATACGGGCGCTTAGCCGACCGGAGA-GAC-TATCGAAGAGGCAT
** * *
31490115 AATGTGCAAGCCGAGGATCAG-CTCGGTCCCCCTCTACATGCTGTCGATCCCATTGCTGGTCCTA
437 AATACGCAAGCCGAGGATCAGCCT-GGTCCCCCTCTACATGCTGTCGATCCCATTACCGGTCCTA
* ** ** **
31490179 CTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAATT
501 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * * * * * *
31490244 CACGAAACGGGCGTGCGGGCACTCAGCTGACCGGAGAGGCAGAATGCGCAAGCTAGGGATTGGCT
566 CACGAAACGAGCGTACAGGCACTCAACCGACCGCAGAGGCAGAATGCGCAAGCTAGGGATTGGCC
* * * *
31490309 CGGTCCACCCTGCGTGCTGCCGATCCTACTGCTGGTCCTACTACCGCAACCCTCGATCCAGTCCG
631 CGATCCACCCTACGTGCTGCCGATCCTACTGCTAGTCCTACTACCGCAACCATCGATCCAGTCCG
* * **
31490374 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAC
696 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAACCCAAC
* *
31490439 CCACGAAACGAGCGTATGGGCGCTCA
761 CCACGAAACGAACGTACGGGCGCTCA
31490465 GTCATCCGGA
Statistics
Matches: 665, Mismatches: 114, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
880 74 0.11
881 170 0.26
882 2 0.00
887 2 0.00
888 1 0.00
890 3 0.00
892 6 0.01
893 403 0.61
894 3 0.00
895 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (879 bp):
ATCTTAGATTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAAGTGCGGGCACTGA
ACCGGTCAGAGAGGCATAATCGCAAGCCAGGGATCGACCTAGTCCCCCTCTACATGCTTCCAATC
CCGCTACCACAACCCTTGATCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCA
ACCCACGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGAGCAAGCCGGGGATCA
ACCCGATCCACCCTAAGTGCTGCCGATCCTGCTGTCACAACCCTCGATCCGATCCGATCTTAGAC
TGGGAATGAACTCTGCATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCATACGGGCGCTTAGCCGACCGGAGAGACTATCGAAGAGGCATAATACGCAAGCCGAGGATC
AGCCTGGTCCCCCTCTACATGCTGTCGATCCCATTACCGGTCCTACTGCCACAACCCTCAGTCCG
ACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGC
ACTCAACCGACCGCAGAGGCAGAATGCGCAAGCTAGGGATTGGCCCGATCCACCCTACGTGCTGC
CGATCCTACTGCTAGTCCTACTACCGCAACCATCGATCCAGTCCGATCTTAGACTAGGAATGAAC
TCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAACCCAACCCACGAAACGAACGTACGGG
CGCTCAACCGACCGAAGAGGCAGAATGTCCAAGCTGGGGATTAGCCCAGTCCCTCCTACGTGCTG
TCGATCCTGCTACCGTAATGCTCGATCCAATCCA
Found at i:31490405 original size:26 final size:26
Alignment explanation
Indices: 31490376--31490428 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31490366 CCAGTCCGAT
31490376 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31490402 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31490428 C
1 C
31490429 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31490512 original size:380 final size:380
Alignment explanation
Indices: 31489802--31490859 Score: 1276
Period size: 380 Copynumber: 2.8 Consensus size: 380
31489792 AGTCCCGCTA
* *
31489802 CCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATACCTAAGCCAACCCAT
1 CCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCAT
* * *
31489867 GAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAG-TCGGGGATCAACCCG
66 GAAACGGGCGTGCGGGCGCTCAGCTGATCGGAGAGGCAGAATGCGCAAGCT-AGGGATCGACCCG
* * * * * *
31489931 ATCCACCCTGCATGCTGTCGATCTTGTTGCTGGTCCTGCTATCGCAACCTTCAGTTCGA-TCCGA
130 ATCCACCCTGCATGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCTTC-GATCCAGTCCGA
** *
31489995 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACC
194 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * *
31490060 CATGGAATGAGCGTGTGGGCGCTTAGCCGACCGGAGAGGACGTTCGAAGTGGCATAATGTGCAAG
259 CACGAAACGAGCGTATGGGCGCTCAGCCGACCGGAGAGGACGTCCGAAGAGGCATAATGCGCAAG
* **
31490125 CCGAGGATCAGCTCGGTCCCCCTCTACATGCTGTCGATCCCAT-TGCTGGTCCTACTG
324 CCGAGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATCCC-TCTGCCAGTCCTACTG
* * * ** *
31490182 CCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAATTCAC
1 CCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCAT
* * * * * *
31490247 GAAACGGGCGTGCGGGCACTCAGCTGACCGGAGAGGCAGAATGCGCAAGCTAGGGATTGGCTCGG
66 GAAACGGGCGTGCGGGCGCTCAGCTGATCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGA
* * * *
31490312 TCCACCCTGCGTGCTGCCGATCCTACTGCTGGTCCTACTACCGCAACCCTCGATCCAGTCCGATC
131 TCCACCCTGCATGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCTTCGATCCAGTCCGATC
*
31490377 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
196 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* *
31490442 CGAAACGAGCGTATGGGCGCTCAGTC-ATCCGGAGAGGCCGTCC-AGAGAGGCATAATGCGCAAG
261 CGAAACGAGCGTATGGGCGCTCAGCCGA-CCGGAGAGGACGTCCGA-AGAGGCATAATGCGCAAG
* * * *
31490505 TCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCTCTGCCAGTCTTGCTG
324 CCGAGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATCCCTCTGCCAGTCCTACTG
* * *
31490562 CCACAACCCTTAGTCTGACTGGGGCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCA
1 CCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCT-TTATGCCTAAGCCAACCCA
** * * *
31490626 TGAAACAAGCGTGC-GGCTGCTCAG-TCGATCGGAGAGGTAGAATTCGCAAGC-CGAGGATCGAC
65 TGAAACGGGCGTGCGGGC-GCTCAGCT-GATCGGAGAGGCAGAATGCGCAAGCTAG-GGATCGAC
* * *
31490688 CCGATCC-CCTCTTGCATGCTGTCGATCCTGCTGCTGGTCTTACTACCACAACCTTC-AGTCCGG
127 CCGATCCACC-C-TGCATGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCTTCGA-TCCAG
* * *
31490751 TACGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAA
189 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAG
* * * * * * * * *
31490815 CCAACCCACAAAATGAGTGTACGGGCACCCAGCCAATCGGAGAGG
253 TCAACCCACGAAACGAGCGTATGGGCGCTCAGCCGACCGGAGAGG
31490860 CAGAATGCGT
Statistics
Matches: 576, Mismatches: 88, Indels: 27
0.83 0.13 0.04
Matches are distributed among these distances:
379 15 0.03
380 424 0.74
381 135 0.23
382 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (380 bp):
CCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCAT
GAAACGGGCGTGCGGGCGCTCAGCTGATCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGA
TCCACCCTGCATGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCTTCGATCCAGTCCGATC
TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTATGGGCGCTCAGCCGACCGGAGAGGACGTCCGAAGAGGCATAATGCGCAAGCC
GAGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATCCCTCTGCCAGTCCTACTG
Found at i:31490795 original size:26 final size:26
Alignment explanation
Indices: 31490757--31490809 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31490747 CCGGTACGAT
31490757 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31490783 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31490809 C
1 C
31490810 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31491951 original size:26 final size:26
Alignment explanation
Indices: 31491915--31491967 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31491905 TCGATCCGAT
31491915 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
31491941 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31491967 C
1 C
31491968 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31493011 original size:158 final size:158
Alignment explanation
Indices: 31492659--31493257 Score: 534
Period size: 157 Copynumber: 3.8 Consensus size: 158
31492649 TCCGTATGCG
*
31492659 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
1 TAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * *** ** * *
31492724 GTCGGAGAGGTAGAACGCGCAAGCCGGGGATTGGCCCGGTCAACCCTGCATGCTGTCGAACCTA-
66 GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCC-AG
* * * ** * **
31492788 C-ACCGCACCCCTCAATCCAGTCT-GATCT
130 CTGCCACAACCCTCGGTCCGGT-TGGGGCT
* * ** * ** *
31492816 TAGA-TTGGGAATGAACT-CTGTATGCATAAGTTAACCCACGAAACGAGCGTGCGAG-ATTGAGT
1 TAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
31492878 CGGTCGAAGAGGCATAATGAGCAAGCCGGGGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCC
64 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCC-CTGCGTGCTGTCGATCC
* *
31492943 CGCTGCCACATCCCTCGGTCCGGTTGGGGCT
128 AGCTGCCACAACCCTCGGTCCGGTTGGGGCT
* * *
31492974 TAGACATGGAATGAAATCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
** * * *
31493039 ACCGAAGAGACAGAATGCGCAAGCCGGGGATCAACCCGGT-CCCCCTGCGTGTTG-CAGGTCCAG
66 GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTC-GATCCAG
***
31493102 CTGCCACAACCCTCGGTCCGACGGGGGCT
130 CTGCCACAACCCTCGGTCCGGTTGGGGCT
* * * * * * * *
31493131 TCGACATGGAATGAACTCCCTATGCCTCAGCCAACCCACGAAAAGGGCATACGGGTGCTCAG-CT
1 TAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-
* * ** * *
31493195 GATC-AGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTTACATGCTGTCGATC
65 GGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCC-TGCGTGCTGTCGATC
31493258 TTGTTGCCGT
Statistics
Matches: 355, Mismatches: 72, Indels: 28
0.78 0.16 0.06
Matches are distributed among these distances:
156 45 0.13
157 189 0.53
158 69 0.19
159 51 0.14
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCCAGC
TGCCACAACCCTCGGTCCGGTTGGGGCT
Found at i:31493324 original size:26 final size:26
Alignment explanation
Indices: 31493288--31493340 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31493278 CCGATCCGAT
*
31493288 CTTAGACTGGGAATGGACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
31493314 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31493340 C
1 C
31493341 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31493654 original size:26 final size:26
Alignment explanation
Indices: 31493625--31493677 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31493615 CCGATCCGAT
*
31493625 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
31493651 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31493677 C
1 C
31493678 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31493909 original size:337 final size:339
Alignment explanation
Indices: 31492994--31493932 Score: 1200
Period size: 337 Copynumber: 2.8 Consensus size: 339
31492984 ATGAAATCCT
* * * * ** * * *
31492994 TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAGACAGAATGCGC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGT
* * * *
31493059 AAGCCGGGGATCAACCCGGTCCCC-CTGCGTGTTG-CAGGT-CCAGCTGCCACAACCCTCGGTCC
66 AAGTCGAGGATCGACCCGGTCCCCTCTGCGTGCTGTC-GGTCCCA-CTGCCACAACCCTCGGTCC
** * *
31493121 GACGGGGGCTTCGACATGGAATGAACTCCCTATGCCTCAGCCAACCCACGAAAAGGGCATACGGG
129 GATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGG--TACGGG
* * *
31493186 TGCTCAGCTGATC-AGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTTACATGC
192 TGCTCAGCCGATCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCTTACGTGC
* * * * * *
31493250 TGTCGATCTTGTTGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGGACTTCGTATGC
255 TGCCGA-CTTGCTGACGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
31493315 TTAGACTGGGGATGAACTTCG
319 TTAGACTGGGGATGAACTTCG
*
31493336 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGT
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGT
* * * * *
31493401 AAGTCGAGGATCGAACCGGTCCCCTTCTGCGTGCTGTTGGTCCCGCTACCACAACCCTTGGTCCG
66 AAGTCGAGGATCGACCCGGTCCCC-TCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCG
*
31493466 ACTT-GAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-AAAATGGGCGTACGG
130 A-TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAA--GG-GTACGG
* * * *
31493529 GTGCTCAGCCGA-CAGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTTACGTGT
191 GTGCTCAGCCGATC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTACGTGC
* * *
31493593 TGCCG-CTT-CT-AC-T-GCCCTCGGTCCGATCCGATCTTAGATTAGGAATGAACTCCGTATGCT
255 TGCCGACTTGCTGACGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCT
31493653 TAGACTGGGGATGAACTTCG
320 TAGACTGGGGATGAACTTCG
31493673 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGT
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGT
*
31493738 AAGTCGAGGATCGACCCGGTCCCTCTCTGTGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCG
66 AAGTCGAGGATCGACCCGGTCCC-CTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCG
* **
31493803 ATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGCC
130 ATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-AGG-GTACGGGT
* * * * *
31493868 GCTAACCCGATCGAAGAGGCATAATGCGTAAACCGGGGATCGGCCCGGTCCCCCTCTACGTGCTG
193 GCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT-TACGTGCTG
31493933 TCAGTCCCAC
Statistics
Matches: 520, Mismatches: 61, Indels: 36
0.84 0.10 0.06
Matches are distributed among these distances:
336 2 0.00
337 278 0.53
338 14 0.03
339 2 0.00
340 1 0.00
341 3 0.01
342 75 0.14
343 20 0.04
344 119 0.23
345 5 0.01
346 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (339 bp):
TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGT
AAGTCGAGGATCGACCCGGTCCCCTCTGCGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGA
TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGTACGGGTGCT
CAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTACGTGCTGCCGA
CTTGCTGACGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
GGGGATGAACTTCG
Found at i:31493932 original size:496 final size:499
Alignment explanation
Indices: 31493313--31494253 Score: 1279
Period size: 496 Copynumber: 1.9 Consensus size: 499
31493303 GACTTCGTAT
* * * * * * * *
31493313 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTAAC
* * ** * * **
31493378 CCGGTCGGAGAGGCATAATGCGTAAGTCGAGGATCGAACCGGTCCCCTTCTGCGTGCTGTTGGTC
66 CCGATCGAAGAGGCATAATGCGTAAACCGAGGATCGAACCGGTCCCCCTCTACGTGCTGTCAGTC
* * **
31493443 CCGCTACCACAACCCTTGGTCCGACTTGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
131 CCACTACCACAACCCTCGGTCCGACGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * *
31493508 ACCCAC-AAAATGGGCGTACGGGTGCTCAGCCGA-CAGAAGAGGCAGAATGCACAAGCCAGGGAT
196 ACCCACGAAAA-GGGCGTACGAGCGCTCAGCCGATCAG-AGAGGCAGAATGCACAAGCCAGGGAC
* * * * * *
31493571 C-GACCCGGTCCCCCTTACGTGTTGCCG-CTT-CTACTG-CCCTCGGTCCGATCCGATCTTAGAT
259 CAG-CCCGGTCCCCCCTACATGCTGCCGACTTGCTACCGACCCTCGATCCGATCCGATCTTAGAC
*
31493632 TAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAAC
323 TAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
* ** *
31493697 GAGCGTGCGGGCGCTGAGCCGGTC-GAAGAGGCATAATGCGTAAGTCGAGGATCGACCCGGTCCC
388 GAGCATGCGGGCGCTGAGCCGACCAG-AGAGGCATAATGCATAAGTCGAGGATCGACCCGGTCCC
31493761 TCTCTGTGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGATTGGG
452 TCTCTGTGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGATTGGG
*
31493809 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGTGTGCGGCCGCTA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGCCGCTA
* **
31493872 ACCCGATCGAAGAGGCATAATGCGTAAACCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAG
64 ACCCGATCGAAGAGGCATAATGCGTAAACCGAGGATCGAACCGGTCCCCCTCTACGTGCTGTCAG
* * *
31493937 TCCCACTGCCACAACCCTCGGTCCGACGGGGGCTTAGACATGGAATGAACTCCCTATGCCTCAGC
129 TCCCACTACCACAACCCTCGGTCCGACGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * **
31494002 CAACCCACGAAAAGGGCGTACGAGCGCTCAGCTGATCAGAGAGGCAGAATGCGCAAGCTGGGGAC
194 CAACCCACGAAAAGGGCGTACGAGCGCTCAGCCGATCAGAGAGGCAGAATGCACAAGCCAGGGAC
* * *
31494067 CAGCCCGGTCCCCCCTACATGCTGTCGATCTTGTTGCCGCAACCCTCGATCCGATCCGATCTTAG
259 CAGCCCGGTCCCCCCTACATGCTGCCGA-CTTGCTACCG--ACCCTCGATCCGATCCGATCTTAG
* *
31494132 ACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAA
321 ACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAA
*
31494197 ACGAGCATGCGGGCGCTGAGCCGACCAGAGGGGCATAATGCATAAGTCGAGGATCGA
386 ACGAGCATGCGGGCGCTGAGCCGACCAGAGAGGCATAATGCATAAGTCGAGGATCGA
31494254 ACTGGCATTG
Statistics
Matches: 382, Mismatches: 51, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
495 1 0.00
496 232 0.61
497 9 0.02
498 3 0.01
499 3 0.01
502 133 0.35
503 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (499 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTAAC
CCGATCGAAGAGGCATAATGCGTAAACCGAGGATCGAACCGGTCCCCCTCTACGTGCTGTCAGTC
CCACTACCACAACCCTCGGTCCGACGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAAAGGGCGTACGAGCGCTCAGCCGATCAGAGAGGCAGAATGCACAAGCCAGGGACCA
GCCCGGTCCCCCCTACATGCTGCCGACTTGCTACCGACCCTCGATCCGATCCGATCTTAGACTAG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
CATGCGGGCGCTGAGCCGACCAGAGAGGCATAATGCATAAGTCGAGGATCGACCCGGTCCCTCTC
TGTGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGATTGGG
Found at i:31494045 original size:159 final size:159
Alignment explanation
Indices: 31493650--31494092 Score: 511
Period size: 159 Copynumber: 2.8 Consensus size: 159
31493640 AACTCCGTAT
* * * * * * * *
31493650 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAAC-GAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTACGGCCGCTA
* * * * * * ** *
31493713 AGCCGGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGACCCGGTCCCTCTCTGTGTGCTGTCGG
64 ACCCGATCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAG
**
31493778 TCCCACTGCCACAACCCTCGGTCCGATTGGG
129 TCCCACTGCCACAACCCTCGGTCCGACGGGG
* *
31493809 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGCCGCTAAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGCCGCTAAC
*
31493874 CCGATCGAAGAGGCATAATGCGTAAACCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAGTC
66 CCGATCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAGTC
31493939 CCACTGCCACAACCCTCGGTCCGACGGGG
131 CCACTGCCACAACCCTCGGTCCGACGGGG
* *
31493968 GCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCACGAAA-AGGGCGTACGAG-CGCTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA-GGCGTACG-GCCGCTA
* * * * * * * *
31494031 AGCTGATC-AGAGAGGCAGAATGCGCAAGCTGGGGACCAGCCCGGTCCCCC-CTACATGCTGTC
64 ACCCGATCGA-AGAGGCATAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTC
31494093 GATCTTGTTG
Statistics
Matches: 246, Mismatches: 33, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
158 13 0.05
159 230 0.93
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGCCGCTAAC
CCGATCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAGTC
CCACTGCCACAACCCTCGGTCCGACGGGG
Found at i:31494163 original size:26 final size:26
Alignment explanation
Indices: 31494127--31494179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31494117 CCGATCCGAT
31494127 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
31494153 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31494179 C
1 C
31494180 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31494420 original size:26 final size:26
Alignment explanation
Indices: 31494384--31494436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31494374 GTTGACTTAG
*
31494384 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31494410 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31494436 G
1 G
31494437 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31494896 original size:158 final size:158
Alignment explanation
Indices: 31494410--31495227 Score: 774
Period size: 158 Copynumber: 5.2 Consensus size: 158
31494400 CCCAGTCTAA
31494410 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* *
31494474 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC-GACTAAGCG
65 AGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAG-CTAAGCG
* * *
31494538 TCCGCACGCCCGTATCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * **
31494568 GCATAGGGAGTTCATTCCATGTCTAAGCCGCAG-TCGGATCGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGTAGGATC-GA
* * * ** * * * *
31494631 CAGCACGTAGAGGGGGATCGGGTCGATCCTCAGCTTATGCAATATGCCTCTCCTG-CTAGCTCAG
64 CAGCACGTAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACCAGCTAAG
* * * *
31494695 CGCCCGCATGTTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
31494727 GCATACAGAGTTTATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATTGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * *
31494791 AGCACGTAGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTAAGTGC
65 AGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGCGC
* *
31494856 CCGCAAGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * ** *
31494885 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * ** * * *
31494949 AACACGTAGAGGGGGATC-GGCCGATCCCTGGCTTGCGGATTATGCCTCTCCGGTCGGCTTAGCA
65 AGCACGTAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGCG
* * **
31495013 CCCGCACGCTTGTTTCGTGGGTTAACTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * *
31495043 GCATACGAAGTTCATTCCCA-GTCTAAGATC-GAATTGGACTGAGGGTTACGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGTAGGATCGA
* * * * * * * * * * * *
31495106 CAGCACGCAGGGGGGACCGAGTCGGTCCCCGGCTTGCACATTCTGCCTTTTCGGCCTGCTGAGTG
64 CAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGCG
*
31495171 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
31495201 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31495228 CATATGGAGT
Statistics
Matches: 519, Mismatches: 123, Indels: 36
0.77 0.18 0.05
Matches are distributed among these distances:
157 16 0.03
158 367 0.71
159 134 0.26
160 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:31495173 original size:316 final size:316
Alignment explanation
Indices: 31494410--31495228 Score: 1092
Period size: 317 Copynumber: 2.6 Consensus size: 316
31494400 CCCAGTCTAA
*
31494410 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * *
31494475 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTAAGCGTC
66 GCACGCAGGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCG-CTAAGTGCC
* * **
31494540 CGCACGCCCGTATCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGCAGTCGG
130 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* * * * *
31494605 ATCGAGGGTTGTGGCAGCGGGACTGACAGCACGTAGAGGGGGATCGGGTCGATCCTCAGCTTATG
195 ACCGAGGGTTGTGGCAGCGGGACCGACAACACGTAGAGGGGGATCGGGCCGATCCTCAGCTTACG
* * * *
31494670 CAATATGCCTCTCCTGCTAGCTCAGCGCCCGCATGTTCGTTTCGTGGGTTGACTTAG
260 CAATATGCCTCTCCGGCTAGCTCAGCACCCGCACGTTCGTTTCGTGGGTTAACTTAG
* * * *
31494727 GCATAC-AGAGTTTATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATTGAC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * *
31494791 AGCACGTAGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTAAGTGC
65 AGCACGCAGGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACC-GCTAAGTGC
*
31494856 CCGCAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
129 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* *
31494921 GACCGAGGGTTGTGGCAGCGGGACCGACAACACGTAGAGGGGGATC-GGCCGATCC-CTGGCTTG
194 GACCGAGGGTTGTGGCAGCGGGACCGACAACACGTAGAGGGGGATCGGGCCGATCCTC-AGCTTA
* * * *
31494984 CGGATTATGCCTCTCCGG-TCGGCTTAGCACCCGCACGCTT-GTTTCGTGGGTTAACTTAG
258 CGCAATATGCCTCTCCGGCT-AGCTCAGCACCCGCACG-TTCGTTTCGTGGGTTAACTTAG
** * * *
31495043 GCATACGAAGTTCATTCCCAGTCTAAGATC-GAATTGGACTGAGGGTTACGACAGTAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * * * *
31495107 AGCACGCAGGGGGGACCGAGTCGGTCCCCGGCTTGCACATTCTGCCTTTTCGGCCTGCTGAGTGC
65 AGCACGCAGGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACC-GCTAAGTGC
* * *
31495172 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
129 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
31495229 ATATGGAGTT
Statistics
Matches: 438, Mismatches: 57, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
315 3 0.01
316 215 0.49
317 219 0.50
318 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (316 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTAAGTGCCC
GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
CCGAGGGTTGTGGCAGCGGGACCGACAACACGTAGAGGGGGATCGGGCCGATCCTCAGCTTACGC
AATATGCCTCTCCGGCTAGCTCAGCACCCGCACGTTCGTTTCGTGGGTTAACTTAG
Found at i:31495231 original size:26 final size:26
Alignment explanation
Indices: 31495201--31495253 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31495191 GTTGGCTTAG
31495201 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATATGGAGTTCATTCCTA-GTCTAA
31495227 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
31495253 G
1 G
31495254 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCTAGTCTAA
Found at i:31496290 original size:159 final size:158
Alignment explanation
Indices: 31495998--31496466 Score: 381
Period size: 159 Copynumber: 3.0 Consensus size: 158
31495988 GGATCGGGTC
* *
31495998 GGATCGAGGGTTACGGCAGCAGGATCAACAGCATGCAGGAGGGATCGGGTCGATCCTCGACTTGC
1 GGATCGAGGGTTACGGCAGCAGGATCAACAGCAGGCAGGAGGGATCGGGTCGATCCCCGACTTGC
* ** * * * * * * * * *
31496063 GCATTCTGCCTCTCCAGCCGACTGTGCTCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTATGCCTCTCCAGCCGACTCAGCGCCCGAACACCCATTTCATGCGTTGACTTAGGCATAAG
31496128 GAGTTCATTCCATGTCTAAGCCCCAGCA
131 GAGTTCATTCCATGTCTAAGCCCCAGCA
** * *
31496156 GGATCGAGGGTTGTGGTAGCAGGA-CAGACAGCAGGCAGAGGGGGATCGGGTCGATCCCCGACTT
1 GGATCGAGGGTTACGGCAGCAGGATCA-ACAGCAGGCAG-GAGGGATCGGGTCGATCCCCGACTT
* * * *
31496220 GCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGAACACTCATTTCATGCGTTGACTTAGGCATA
64 GCGCATTATGCCTCTCCAGCCGACTCAGCGCCCGAACACCCATTTCATGCGTTGACTTAGGCATA
* **
31496285 AGGAGTTCATTCCCA-ATCTAAG-ATCAGATCA
129 AGGAGTTCATT-CCATGTCTAAGCCCCAG--CA
* * * * ** * ** * *
31496316 -GACCGAGGGTTGCGGCGGCAAGATTGACAACACACTGGAATGGATCGGG-CTGATCCCCGACTT
1 GGATCGAGGGTTACGGCAGCAGGATCAACAGCAGGCAGG-AGGGATCGGGTC-GATCCCCGACTT
* ** * * ** * * * * *
31496379 GCGCATTCTGCCTCTCCAGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATA
64 GCGCATTATGCCTCTCCAGCCGACTCAGCGCCCGAACACCCATTTCATGCGTTGACTTAGGCATA
* * *
31496444 CGGAGTTTATTCCATGTCCAAGC
129 AGGAGTTCATTCCATGTCTAAGC
31496467 ATATGGAGTT
Statistics
Matches: 247, Mismatches: 54, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 39 0.16
159 201 0.81
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GGATCGAGGGTTACGGCAGCAGGATCAACAGCAGGCAGGAGGGATCGGGTCGATCCCCGACTTGC
GCATTATGCCTCTCCAGCCGACTCAGCGCCCGAACACCCATTTCATGCGTTGACTTAGGCATAAG
GAGTTCATTCCATGTCTAAGCCCCAGCA
Found at i:31497737 original size:26 final size:26
Alignment explanation
Indices: 31497700--31497752 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31497690 GTTGACTTAG
31497700 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31497726 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
31497752 G
1 G
31497753 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31498848 original size:26 final size:26
Alignment explanation
Indices: 31498818--31498868 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31498808 GTTGACTTAG
*
31498818 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
31498844 GCATATGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
31498869 GGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31499064 original size:355 final size:358
Alignment explanation
Indices: 31498417--31499067 Score: 774
Period size: 355 Copynumber: 1.8 Consensus size: 358
31498407 TGGCCAACTG
* * * *
31498417 AGCGCCCGCACGCTCGTGTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCATA
1 AGCGCCCGCACGATCGTGTCATGAGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATA
* *
31498482 TAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAATAGCAGGACGAGTAGCAGG
66 TAGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTG--AT------A-GAGTAGCAGG
*** * * * * ** *
31498547 ATCGACAGCATGCAGGGGGGATCAGGTTGATCCCCGGTTTGCATATTCTGCCTCTTCGATTGGCT
122 ATCGACAGCATGCAGGGGGGATCAGGCCAATCCCCGGCTTACACATTCTGCCTCTCCGACCGACT
* * * *
31498612 GAGCACTCGCACGCTCATTTCATGGGTTGGCTTAGGGATAGGGAGTCCATTCCATGTCTAAGCCC
187 GAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTATAAGCCC
* * **
31498677 CAACCAGACCGAGGGTTGTGGCAGTTGGACCGACAGCGAGATTGGCATCATGTGGAGGGGGACTG
252 CAACCAGACCAAGGGTTATGGCAGCGGGACCGACAGCGAGATTGGCATCATGTGGAGGGGGACTG
31498742 GGCTGATCCCCGGCTTGTGCATTATGTCTCTCCGGTAGGCTA
317 GGCTGATCCCCGGCTTGTGCATTATGTCTCTCCGGTAGGCTA
* * *
31498784 AGCGCCCGCACGATTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCAT
1 AGCGCCCGCACGATCGTGTCATGAGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCAT
* * **
31498848 ATGGAGTTCATTCCCAATCTAGGATCAGACCGAA-TCGAGGGTTG-T-G-GTAGCAGGATCGGTA
65 ATAGAGTTCATTCCCAATCTAAGATCAGACCGAACT-GAGGGTTGATAGAGTAGCAGGATCGACA
* * *
31498909 GCATGCATGGGGGATCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACC
129 GCATGCAGGGGGGATCAGGCCAATCCCCGGCTTACACATTCTGCCTCTCCGACCGACTGAGCACC
* * ** * *
31498974 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATAT-CATGTATAAGCCCCAGCCG
194 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTCCAT-TCCATGTATAAGCCCCAACCA
* *
31499038 GATCAAGGGTTATGGTAGCGGGACCGACAG
258 GACCAAGGGTTATGGCAGCGGGACCGACAG
31499068 TATGCAGAGG
Statistics
Matches: 239, Mismatches: 42, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
355 141 0.59
356 2 0.01
364 1 0.00
366 1 0.00
367 91 0.38
368 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (358 bp):
AGCGCCCGCACGATCGTGTCATGAGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATA
TAGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTGATAGAGTAGCAGGATCGACAGC
ATGCAGGGGGGATCAGGCCAATCCCCGGCTTACACATTCTGCCTCTCCGACCGACTGAGCACCCG
CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTATAAGCCCCAACCAGAC
CAAGGGTTATGGCAGCGGGACCGACAGCGAGATTGGCATCATGTGGAGGGGGACTGGGCTGATCC
CCGGCTTGTGCATTATGTCTCTCCGGTAGGCTA
Found at i:31499911 original size:26 final size:26
Alignment explanation
Indices: 31499875--31499927 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31499865 GTTGACTTAG
31499875 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
31499901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31499927 G
1 G
31499928 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31500472 original size:26 final size:26
Alignment explanation
Indices: 31500443--31500492 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
31500433 GACTTAGGCC
31500443 TACGGAGTTCATCCCCAATCTAAGCA
1 TACGGAGTTCATCCCCAATCTAAGCA
* *
31500469 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
31500493 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCA
Found at i:31500767 original size:159 final size:158
Alignment explanation
Indices: 31500536--31500968 Score: 405
Period size: 159 Copynumber: 2.7 Consensus size: 158
31500526 TGGCAGCATA
* * * * * * * * *
31500536 CAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTGCAGCCGGCTGAATGA-CCACA
1 CAGGGGGGACCGGGCCGAT-CCCAACTTGCGCATTATACCTCTCCAGCGGGCTCAA-CACCCATA
* * * *
31500600 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-T
64 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACT
**
31500663 CGAGGGTTG-TGGTAGCAAGACCGACAGCAAG
129 -GAGGGTTGCT-ACAGCAAGACCGACAGCAAG
* * ** * *
31500694 CAGAGGGGGACCGGGCTGATCCCTAACTTGCGCATTATGCCTCTCC-GATTGGCTCAGCACCTGA
1 CAG-GGGGGACCGGGCCGATCCC-AACTTGCGCATTATACCTCTCCAG-CGGGCTCAACACC-CA
* * * *
31500758 -ACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCAG
62 TACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAG
* * *
31500820 ACTGAGGGTTGCTACAGCAGGATCGACAGCATG
126 ACTGAGGGTTGCTACAGCAAGACCGACAGCAAG
* ** * * * *
31500853 CAGGGGGGACCTGGCCGATCCCGGCTTGTGCATTCTACCTCTCCAGCGGGCTGAACGCCCATACG
1 CAGGGGGGACCGGGCCGATCCCAACTTGCGCATTATACCTCTCCAGCGGGCTCAACACCCATACG
*
31500918 CTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
31500969 TATAGAGTTC
Statistics
Matches: 221, Mismatches: 41, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
156 4 0.02
157 69 0.31
158 30 0.14
159 112 0.51
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGGGGGGACCGGGCCGATCCCAACTTGCGCATTATACCTCTCCAGCGGGCTCAACACCCATACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACTGA
GGGTTGCTACAGCAAGACCGACAGCAAG
Found at i:31500969 original size:26 final size:26
Alignment explanation
Indices: 31500940--31500992 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31500930 GTTGGCTTAG
*
31500940 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
31500966 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
31500992 G
1 G
31500993 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:31501143 original size:184 final size:183
Alignment explanation
Indices: 31500791--31501151 Score: 553
Period size: 184 Copynumber: 2.0 Consensus size: 183
31500781 AGGCATACGA
*
31500791 AGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCTACAGCAGGATCGACAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGATCGACAGCATGCAG
* * * *
31500856 GGGGGACCTGGCCGATCCCGGCTTGTGCATTCTACCTCTCCAGCGGGCTGAACGCCCATACGCTC
66 GGGGGACCAGGCCGATCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAACGCCCACACGCTC
* *
31500921 GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATATAG
131 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
* * **
31500974 AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGATCGACAGCATGCAG
* * * * *
31501039 GGGGGACCAGGTCGATCCACGGCTTGCGCATTCTGCCTCTCC-GACCGGCTGAGCGCTCGCACGC
66 GGGGGACCAGGCCGATCC-CGGCTTGCGCATTCTACCTCTCCAG-CCGGCTGAACGCCCACACGC
31501103 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31501152 CCCAGTCGGA
Statistics
Matches: 160, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
183 77 0.48
184 83 0.52
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGATCGACAGCATGCAG
GGGGGACCAGGCCGATCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAACGCCCACACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG
Found at i:31501398 original size:26 final size:26
Alignment explanation
Indices: 31501368--31501420 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31501358 GTTGACTTAG
31501368 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * *
31501394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
31501420 G
1 G
31501421 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:31501761 original size:26 final size:26
Alignment explanation
Indices: 31501711--31501763 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31501701 GTTGGCTTAG
*
31501711 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
*
31501737 GCATAGGGAGTTCATTCGCA-ATCTAA
1 GCATACGGAGTTCATTC-CACATCTAA
31501763 G
1 G
31501764 AGTTGAGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:31502468 original size:26 final size:26
Alignment explanation
Indices: 31502432--31502484 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31502422 GTTGACTTAG
31502432 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
31502458 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31502484 G
1 G
31502485 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31502793 original size:140 final size:140
Alignment explanation
Indices: 31502533--31502801 Score: 308
Period size: 140 Copynumber: 1.9 Consensus size: 140
31502523 GCACACAGGG
* * * * * *
31502533 GGGACCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCG
1 GGGACCGGGCCGATCCCCGACTTACACATTATGCCTCTCCGACCGACTCAACACCCGCACGCCCG
* * * * * * *
31502598 TTTCGTGGGATGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTC
66 TTTCATGGGATGACTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCAGACAGAGGGTC
31502663 ATGCCAGAGA
131 ATGCCAGAGA
* * * ** * *
31502673 GGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGACCGACTCAATGCTCGCACGCTCG
1 GGGACCGGGCCGATCCCCGACTTACACATTATGCCTCTCCGACCGACTCAACACCCGCACGCCCG
* *
31502738 TTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACAGAGGG
66 TTTCATGGGATGACTTAAGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-TCAGACAGAGGG
31502801 T
129 T
31502802 TGCGACAGTA
Statistics
Matches: 105, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
139 3 0.03
140 99 0.94
141 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.22
Consensus pattern (140 bp):
GGGACCGGGCCGATCCCCGACTTACACATTATGCCTCTCCGACCGACTCAACACCCGCACGCCCG
TTTCATGGGATGACTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCAGACAGAGGGTC
ATGCCAGAGA
Found at i:31502951 original size:26 final size:26
Alignment explanation
Indices: 31502915--31502966 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31502905 TTGGCTTAGC
31502915 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
31502941 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
31502967 ATCGAATAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:31503800 original size:26 final size:26
Alignment explanation
Indices: 31503764--31503815 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31503754 TTGGCTTAGC
31503764 CATACAAAGTTCATT-CCATGTCTAAG
1 CATACAAAGTTCATTCCCA-GTCTAAG
*
31503790 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACAAAGTTCATTCCCAGTCTAAG
31503816 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACAAAGTTCATTCCCAGTCTAAG
Found at i:31504047 original size:850 final size:849
Alignment explanation
Indices: 31502403--31504321 Score: 2829
Period size: 850 Copynumber: 2.3 Consensus size: 849
31502393 GACTGAGCGT
31502403 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAGCATATAGA
1 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATATAGA
* * * *
31502467 GTTCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGTGGTAGCAAGATCGATAGCACACAGG
65 GTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGG
* * * * *
31502532 GGGGACCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCC
130 GGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCCC
31502597 GTTTCGTGGGATGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
195 GTTTCGTGGGATGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
* * **
31502662 CATGCCAGAGAGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGACCGACTCAATGC
260 CATGCCAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAACAC
* *
31502727 TCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
325 TCGCACGCTCATTTCATGGGTTGACATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
* * * *
31502792 GACAGAGGGTTGCGACAGTAGAATCGACAGCACGCAGGGGGGATCGGGTCGATCCCTAACTTGCA
390 GACAGAGGGTTACGACAGCAGAATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAACTTACA
* * *
31502857 TATTCTACCTCTCCAGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGA
455 CATTCTACCTCTCCAGCTGGCTGAG-GCCCGCACACTCGTTTCGTGGGTTGGCTTAGCCATACAA
*
31502922 AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATAGGACCGAGGGTT
519 AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATAGGACCAAGGGTT
*
31502987 ACGGTAGTAGGACCAGCAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTAC
584 ACGATAGTAGGACCAGCAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTAC
* * * *
31503052 GCATTCTACCTCTCCGGTCGGCTGAGCCCCCGCACGCTTGTTTCATGGTTTGGCTTAGGCATACG
649 GCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCTTGTTTCATGGTTTGGCTTAGGCATACA
** *
31503117 GAGTTCATTCAATGTCTAAGCCCTAGTCGGACCGAAGGTTGTGGCAGCAGGATTGACAGGAGGCA
714 GAGTTCATTCAATGTCTAAGCCCTAACCGGACCGAAGGTTGTGGCAGCAGGATCGACAGGAGGCA
* *
31503182 GAGGGTGACCGGGTTGATCCCCAATTTACGCATTATGCCTCTCCGACTAGCCTCTCCGACCGGTT
779 GAGGGGGACCGGGTTGATCCCCAATTTACGCATTATGCCTCTCCGACTAGCCTCTCCGACCGGCT
*
31503247 GAGTGC
844 AAGTGC
*
31503253 CTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAG
1 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAG
* *
31503318 TTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAGGATCGGTAGCATGCAGGG
66 TTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGGG
* * * * *
31503383 GGGACCGAGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGTTTAGCACCCGCATGCCCG
131 GGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCCCG
*
31503448 TTTCGTGGGATGGCTTAGGCATAGGGAGTTT-ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
196 TTTCGTGGGATGGCTTAGGCATAGGGA-TTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
* * * * *
31503512 TATGGCAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGACCGACTCAACAC
260 CATGCCAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAACAC
* * *
31503577 TCGCACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA
325 TCGCACGCTCATTTCATGGGTTGACATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
* * * * * *
31503642 GACTGAGGGTTACGATAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTACG
390 GACAGAGGGTTACGACAGCAGAATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAACTTACA
* * *
31503707 CATTCTGCCTCTCCGGCTGGCTGA-GCATCGCACACTCGTTTCGTGGGTTGGCTTAGCCATACAA
455 CATTCTACCTCTCCAGCTGGCTGAGGC-CCGCACACTCGTTTCGTGGGTTGGCTTAGCCATACAA
*
31503771 AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATAGGACCAAGGGTT
519 AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATAGGACCAAGGGTT
* * * *
31503836 ACGATAGTAGGACCAGCAGCAAGATCGGTAGCATGCAGGGGGGGACTGGGCCGATCCCTAGCTTG
584 ACGATAGTAGGACCAGCAGCAAGATCGGTAGCACGCA-GGGGGGACCGGGCCGATCCCCAGCTTA
* * * *
31503901 CGCATTCTACCTCTCCGATCGACTGAGCACCTGCATGTTTGTTTCGTGGTTTGGCTTAGGCATAC
648 CGCATTCTACCTCTCCGATCGACTGAGCACCCGCACGCTTGTTTCATGGTTTGGCTTAGGCATAC
* * * *
31503966 AGAGTTCATTCCATGTCTAAGCCCTAACCGGACCTAGGGTTGTGGCAGCAGGATCGACAGGAGGT
713 AGAGTTCATTCAATGTCTAAGCCCTAACCGGACCGAAGGTTGTGGCAGCAGGATCGACAGGAGGC
* * * * *
31504031 AGAGGGGGATCGGGTTGATCCTCGATTTATGCATTATGCCTCTCCGACTGGCCTCTCCGACCGGC
778 AGAGGGGGACCGGGTTGATCCCCAATTTACGCATTATGCCTCTCCGACTAGCCTCTCCGACCGGC
31504096 TAAGTGC
843 TAAGTGC
* * * * *
31504103 CCGCACGCTCGTTTTTTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACAGAG
1 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAG
* * * * * * ** *
31504168 CTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTACGGCAATAGGATCGATAACACGCA-GG
66 TTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGGG
* * * * * * * *
31504232 GGGACCGAGCCGATCCCCGGCTTGCGTATTCTACCTCTTCAGTCGGGTAAGCGCCCGCACGCCCG
131 GGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCCCG
* **
31504297 TTTCATAGGTTTGGCTTAGGCATAG
196 TTTCGT-GGGATGGCTTAGGCATAG
31504322 CCAGACCGAG
Statistics
Matches: 955, Mismatches: 109, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
848 2 0.00
849 192 0.20
850 757 0.79
851 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (849 bp):
CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAG
TTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGGG
GGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCCCG
TTTCGTGGGATGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTC
ATGCCAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAACACT
CGCACGCTCATTTCATGGGTTGACATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG
ACAGAGGGTTACGACAGCAGAATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAACTTACAC
ATTCTACCTCTCCAGCTGGCTGAGGCCCGCACACTCGTTTCGTGGGTTGGCTTAGCCATACAAAG
TTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATAGGACCAAGGGTTAC
GATAGTAGGACCAGCAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGC
ATTCTACCTCTCCGATCGACTGAGCACCCGCACGCTTGTTTCATGGTTTGGCTTAGGCATACAGA
GTTCATTCAATGTCTAAGCCCTAACCGGACCGAAGGTTGTGGCAGCAGGATCGACAGGAGGCAGA
GGGGGACCGGGTTGATCCCCAATTTACGCATTATGCCTCTCCGACTAGCCTCTCCGACCGGCTAA
GTGC
Found at i:31504172 original size:26 final size:26
Alignment explanation
Indices: 31504132--31504184 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31504122 GTTGACTTAG
* * *
31504132 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
31504158 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
31504184 G
1 G
31504185 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:31504643 original size:26 final size:26
Alignment explanation
Indices: 31504606--31504658 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31504596 GTTAGATTGG
*
31504606 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31504632 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31504658 G
1 G
31504659 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31511535 original size:159 final size:158
Alignment explanation
Indices: 31511371--31511749 Score: 438
Period size: 158 Copynumber: 2.4 Consensus size: 158
31511361 CGATCGACTG
* *
31511371 AGCGCCCGTACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
1 AGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * * * * *
31511435 AAGACC-GACCGAGGGTTGTGGCAGCGGGACCGACAACATGCAGAGGGGGACCGAACCAATCCCA
65 -AGACCAAACCAAGGGTTGCGACAGCAGGACCGACAACACGCAG-GGGGGACCGAACCAATCCCA
* ** * *
31511499 GGCTTTCGCATTATGCCTCTCCGGCTGGCTC
128 GGCTTACGCATTACACCTCTCCGACCGGCTC
* * * * * **
31511530 AGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTATCTAAGATCA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA
* * * * * * * *
31511595 GACCAAACTAATGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGC
66 GACCAAACCAAGGGTTGCGACAGCAGGACCGACAACACGCAGGGGGGACCGAACCAATCCCAGGC
* *
31511660 TTACGCATTCCACCTCTCCGACCGGCTG
131 TTACGCATTACACCTCTCCGACCGGCTC
*
31511688 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31511750 ATGCGGAGTT
Statistics
Matches: 181, Mismatches: 37, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
158 101 0.56
159 79 0.44
160 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (158 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA
GACCAAACCAAGGGTTGCGACAGCAGGACCGACAACACGCAGGGGGGACCGAACCAATCCCAGGC
TTACGCATTACACCTCTCCGACCGGCTC
Found at i:31511708 original size:158 final size:159
Alignment explanation
Indices: 31511332--31511748 Score: 480
Period size: 159 Copynumber: 2.6 Consensus size: 159
31511322 GGGATCGGGA
* * * * *
31511332 CGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGTACGC-CTGTTTCGTGGG
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGG
* * * * * * *
31511396 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGACCGACCGAGGGTTGTGGCAGCG
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAGACCAACCAAGGGTTGCGACAGCA
*
31511461 GGACCGACAACATGCAGAGGGGGACCGAAC
130 GGACCGACAACACGCAGAGGGGGACCGAAC
* * * * * * * * *
31511491 CAATCCCAGGCTTTCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACACTCATTTCGTGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * * *
31511556 TGACTTAGGCATACGGAGTTCATTCCCTATCTAAGATC-AGACCAAACTAATGGTTGCGATAGCA
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAGACC-AACCAAGGGTTGCGACAGCA
* * *
31511620 GGATCGACAGCACGCAG-GGGGGACCGAGC
130 GGACCGACAACACGCAGAGGGGGACCGAAC
** *
31511649 CGATCCCCGGCTTACGCATTCCACCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
31511714 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
31511749 CATGCGGAGT
Statistics
Matches: 210, Mismatches: 46, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
158 101 0.48
159 108 0.51
160 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (159 bp):
CGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAGACCAACCAAGGGTTGCGACAGCAG
GACCGACAACACGCAGAGGGGGACCGAAC
Found at i:31512127 original size:26 final size:26
Alignment explanation
Indices: 31512090--31512142 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31512080 GTTGACTTAG
31512090 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31512116 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
31512142 G
1 G
31512143 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31512615 original size:26 final size:26
Alignment explanation
Indices: 31512586--31512638 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31512576 GTTGACTTAG
* * *
31512586 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
31512612 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
31512638 G
1 G
31512639 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31512818 original size:26 final size:25
Alignment explanation
Indices: 31512773--31512821 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
31512763 GGCTTAGGCA
31512773 TACGGAGTTATTCCATGTCTAAGCC
1 TACGGAGTTATTCCATGTCTAAGCC
31512798 TACGGAGTTCATTCCCA-GTCTAAG
1 TACGGAGTT-ATT-CCATGTCTAAG
31512822 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 10 0.45
27 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (25 bp):
TACGGAGTTATTCCATGTCTAAGCC
Found at i:31513528 original size:26 final size:26
Alignment explanation
Indices: 31513492--31513544 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31513482 GTTGACTTAG
31513492 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
31513518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
31513544 G
1 G
31513545 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:31515956 original size:159 final size:158
Alignment explanation
Indices: 31515575--31515956 Score: 396
Period size: 159 Copynumber: 2.4 Consensus size: 158
31515565 CACAATCTAA
* * * * *
31515575 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-CTGGTAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGC-AGCAGTAGGATCGAC
* * * * * *
31515639 AACACGTAAGTGAGATCGGGCCAATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGTGGAGCGC
65 AACACGCAAGGGAGATCGAGCCAATCCTCGGCTTACGCATTATGCCTCTCCGGCCGGTGCAACGC
** *
31515704 CTGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCACACGCCCATTTCGTGGGTTGACTTAG
* * ** * * ** *
31515733 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAAACCGAGGGTTGTAGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCAGACCGAGGGTTGCAGCAGTAGGATCGA
* * * * *
31515796 CATCATGCAGAGGGGGATCGAGCCAATCC-CTGGCTTACGCATTATGCCTCTTCGGTCGGCT-CA
64 CAACACGCA-AGGGAGATCGAGCCAATCCTC-GGCTTACGCATTATGCCTCTCCGGCCGG-TGCA
*
31515859 ACGCCCACACGCTCATTTCGTGGGTTGACTTAG
126 ACGCCCACACGCCCATTTCGTGGGTTGACTTAG
* *
31515892 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAGCAATAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGTAGGATCGACA
31515957 GCACACGGGG
Statistics
Matches: 176, Mismatches: 40, Indels: 15
0.76 0.17 0.06
Matches are distributed among these distances:
157 5 0.03
158 48 0.27
159 117 0.66
160 6 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGTAGGATCGACA
ACACGCAAGGGAGATCGAGCCAATCCTCGGCTTACGCATTATGCCTCTCCGGCCGGTGCAACGCC
CACACGCCCATTTCGTGGGTTGACTTAG
Found at i:31517197 original size:26 final size:26
Alignment explanation
Indices: 31517167--31517219 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31517157 GTTGACTTAG
31517167 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
31517193 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31517219 G
1 G
31517220 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31517501 original size:159 final size:156
Alignment explanation
Indices: 31517230--31517692 Score: 450
Period size: 159 Copynumber: 2.9 Consensus size: 156
31517220 ATCGGACCAG
** * * *
31517230 ACCGAGGGTTGCGGTAGTAGAAT-AGGCAGCAC-CTAGGGGGGATCGGGCAGATCTCCGGCTTGC
1 ACCGAGGGTTGCGACAGTAGAATCA-ACAGCACAC-AGGGGGGATCGGGCCGATCCCCGGCTTGC
* * * * * *
31517293 GCATTCTACCTTTCTGGCCGACTAAGTGCCTGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAG
64 GCATTCTGCCTCTCCGGCCGACTAAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATAC
*
31517357 GGAGTACATTCCATGTCTAGGCCCCAACAGA
128 GGAGT-CATTCCATGTCTAGACCCCAAC-GA
* * * * * *
31517388 ACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGCGGGGGATCGGGCCGATCCCCGGCTTGCG
1 ACCGAGGGTTGCGACAGTAGAATCAACAGCACACAG-GGGGGATCGGGCCGATCCCCGGCTTGCG
* * * * * * *
31517453 CATTATGCCTCTCCGACCGACTCAGCGCCCGTACGCTCATTTCCTGGGTTGACTTAGGCATACGG
65 CATTCTGCCTCTCCGGCCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* ** * *
31517518 AGTTCATTCCCA-GTCTAAGATCGGATCGG
130 AG-TCATT-CCATGTCT-AGACCCCAACGA
* * * *
31517547 ACTGATGGTTGCGACAGTAGAATCAACAGCACACAGGGGGGATCGGACCGATCCCCGACCTT-CG
1 ACCGAGGGTTGCGACAGTAGAATCAACAGCACACAGGGGGGATCGGGCCGATCCCCG-GCTTGCG
* * * *
31517611 CATTCTGCCTCTCCGGTCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAG
65 CATTCTGCCTCTCCGGCCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
31517676 AGCTCATTCCATGTCTA
130 AG-TCATTCCATGTCTA
31517693 AGCATACGGA
Statistics
Matches: 248, Mismatches: 48, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 115 0.46
159 119 0.48
160 10 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
ACCGAGGGTTGCGACAGTAGAATCAACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGC
ATTCTGCCTCTCCGGCCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTCATTCCATGTCTAGACCCCAACGA
Found at i:31517698 original size:26 final size:26
Alignment explanation
Indices: 31517668--31517720 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31517658 GTTGGCTTAG
31517668 GCATACAGAGCTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
* *
31517694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
31517720 G
1 G
31517721 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:31517789 original size:343 final size:344
Alignment explanation
Indices: 31517396--31518039 Score: 909
Period size: 343 Copynumber: 1.9 Consensus size: 344
31517386 GAACCGAGGG
* * * *
31517396 TTGTGGCAGTGGGATCGACAGCACGCAGCGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC
1 TTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC
*
31517461 CTCTCCGACCGACTCAGCGCCCGTACGCTCATTTCCTGGGTTGACTTAGGCATACGGAGTTCATT
66 CTCTCCGACCGACTCAGCGCCCGCACGCTCATTTCCTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * **
31517526 CCCAGTCTAAGATCGGATCGGACTGATGGTTGCGACAGTAGAATCAACAGCACAC-AGGGGGGAT
131 CCCAGTCTAAAATCAGATCGAACCGAGGGTTGCGACAGTAGAATCAACAGCACACAAAGAAGGAT
* * * * * *
31517590 C-GGACCGATCCCCGACCTT-CGCATTCTGCCTCTCCGGTC-GACTGAGCGCCCGCATGCTCGTT
196 CGGGACCAAT-CCAG-CCTTGCGCATTCTACCTCTCCGGCCAG-CTGAGCGCCCGCACGCTCATT
31517652 TCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
258 TCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
31517717 TAAGATCAGACCGGACCGAAGA
323 TAAGATCAGACCGGACCGAAGA
*
31517739 TTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTGCGCATTATGC
1 TTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC
* * **
31517804 CTCTCCGATCGACTCAGCGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT
66 CTCTCCGACCGACTCAGCGCCCGCACGCTCATTTCCTGGGTTGACTTAGGCATACGGAGTTCATT
* ** * *
31517869 CCCAGTCTAAAATCAGATCGAACCGAGGGTTGCGACAGTAGGATTGACAGTACGCAAAGAAGGAT
131 CCCAGTCTAAAATCAGATCGAACCGAGGGTTGCGACAGTAGAATCAACAGCACACAAAGAAGGAT
* * * * *
31517934 CGGGGCCAATCCAGGCTTGCGCATTCTACCTCTCTGGCCAGCTGAGCGCCTGCACGTTCATTTCA
196 CGGGACCAATCCAGCCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTCA
* *
31517999 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
261 TGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGC
31518040 CCCAGCCGGA
Statistics
Matches: 261, Mismatches: 36, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
343 168 0.64
344 86 0.33
345 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (344 bp):
TTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC
CTCTCCGACCGACTCAGCGCCCGCACGCTCATTTCCTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAAATCAGATCGAACCGAGGGTTGCGACAGTAGAATCAACAGCACACAAAGAAGGAT
CGGGACCAATCCAGCCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTCA
TGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCGGACCGAAGA
Found at i:31517828 original size:185 final size:184
Alignment explanation
Indices: 31517510--31517878 Score: 474
Period size: 185 Copynumber: 2.0 Consensus size: 184
31517500 GTTGACTTAG
* * * * * * *
31517510 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGATGGTTGCGACAGTAGAATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGATTGCGACAGGAGAACCAACA
* * *
31517575 GCACACAGGGGGGATCGGACCGATCCCCGACCTTCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACACAGGGGGGATCGGACCGATCCCCGACCTTCGCATTATGCCTCTCCGATCGACTCAGCGCC
* *
31517640 CGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGCTCATT-CCATGTCTAA
131 CGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGCTCATTCCCA-GTCTAA
* * *
31517694 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGATTGTGGCAGCGAG-ACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGATTGCGACAG-GAGAACCAAC
* * * *
31517758 AGCACGCAGAGGGGGATTGGGCCGATCCCCG-GCTTGCGCATTATGCCTCTCCGATCGACTCAGC
65 AGCACACAG-GGGGGATCGGACCGATCCCCGACCTT-CGCATTATGCCTCTCCGATCGACTCAGC
** * *
31517822 GCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
128 GCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGCTCATTCCCAGTCTAA
31517879 AATCAGATCG
Statistics
Matches: 158, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
184 62 0.39
185 93 0.59
186 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGATTGCGACAGGAGAACCAACA
GCACACAGGGGGGATCGGACCGATCCCCGACCTTCGCATTATGCCTCTCCGATCGACTCAGCGCC
CGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGCTCATTCCCAGTCTAA
Found at i:31518529 original size:159 final size:159
Alignment explanation
Indices: 31518366--31518725 Score: 372
Period size: 159 Copynumber: 2.3 Consensus size: 159
31518356 GCCCGTTTTG
* * * * *
31518366 TGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTAAGCCCTAGCT-GGA-TGAAGGGTTATG
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAAGCACTAGATCGGACCGAA-GGTTACG
* * * *
31518429 GCAGTC-GGACCGGCAGCACGTATAGGGGGACCGGGCC-GATCCCCGACTTGCGCATTATGCCTC
64 ACAG-CAAGACCGACAGCACGTAGAGGGGGACCGGGCCAG-TCCCCGACTTGCGCATTATGCCTC
* * * *
31518492 TCCGACTGGCTCAGTGCCCGAACACTCGTTTCA
127 TCCAACCGGCTAAGTGCCCGAACACTCATTTCA
* * * * *
31518525 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-ATTAGATCGGACCGAAGGTTGCGA
1 TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAGTCTAAGCACTAGATCGGACCGAAGGTTACGA
* * * * *
31518589 CAGCAAGATCGACAGCACGTAGGGGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTGCCTCTTC
65 CAGCAAGACCGACAGCACGTAGAGGGGGACCGGGCCAGTCCCCGACTTGCGCATTATGCCTCTCC
* * **
31518654 AACCGGTTAAGTGCCCGCATGCTCATTTCA
130 AACCGGCTAAGTGCCCGAACACTCATTTCA
31518684 TGGGTTGGCTTAGGCATACGGG-GTTCATTCCAAGTCTAAGCA
1 TGGGTTGGCTTAGGCATA-GGGAGTTCATTCC-AGTCTAAGCA
31518726 TACGAATTTC
Statistics
Matches: 163, Mismatches: 30, Indels: 15
0.78 0.14 0.07
Matches are distributed among these distances:
158 7 0.04
159 147 0.90
160 9 0.06
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCAGTCTAAGCACTAGATCGGACCGAAGGTTACGAC
AGCAAGACCGACAGCACGTAGAGGGGGACCGGGCCAGTCCCCGACTTGCGCATTATGCCTCTCCA
ACCGGCTAAGTGCCCGAACACTCATTTCA
Found at i:31518879 original size:26 final size:26
Alignment explanation
Indices: 31518849--31518900 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
31518839 GTTGACTTAG
31518849 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31518875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31518901 AATCAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31519219 original size:26 final size:26
Alignment explanation
Indices: 31519190--31519242 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31519180 GTTGGCTTAG
31519190 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
31519216 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31519242 G
1 G
31519243 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31521045 original size:123 final size:123
Alignment explanation
Indices: 31520825--31521070 Score: 438
Period size: 123 Copynumber: 2.0 Consensus size: 123
31520815 ATGGCATTGC
*
31520825 TAGGGCAGAAATATGAAGTTGTGCTTGAACCCATCTACCACCAGTTCGATCCCTGGCTTGCACAT
1 TAGGGCAGAAATATGAAGATGTGCTTGAACCCATCTACCACCAGTTCGATCCCTGGCTTGCACAT
* *
31520890 CCTGCCTCTTTGGTCGACTGAGCATCTACATGCTCATTTTGTGGGTTGACTTAGGCAT
66 CCTGCCTCTCTAGTCGACTGAGCATCTACATGCTCATTTTGTGGGTTGACTTAGGCAT
* *
31520948 TAGGGCAGAAATATGAAGATGTGCTTGAACCCATCTACCACCAGTTCGATCCTTGGCTTGCGCAT
1 TAGGGCAGAAATATGAAGATGTGCTTGAACCCATCTACCACCAGTTCGATCCCTGGCTTGCACAT
*
31521013 CCTGCCTCTCTAGTCGACTGAGCATCTGCATGCTCATTTTGTGGGTTGACTTAGGCAT
66 CCTGCCTCTCTAGTCGACTGAGCATCTACATGCTCATTTTGTGGGTTGACTTAGGCAT
31521071 ACGGAGTTCA
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 117 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.30
Consensus pattern (123 bp):
TAGGGCAGAAATATGAAGATGTGCTTGAACCCATCTACCACCAGTTCGATCCCTGGCTTGCACAT
CCTGCCTCTCTAGTCGACTGAGCATCTACATGCTCATTTTGTGGGTTGACTTAGGCAT
Found at i:31521686 original size:26 final size:26
Alignment explanation
Indices: 31521656--31521708 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31521646 GTTGACTTAG
31521656 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
31521682 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31521708 G
1 G
31521709 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31522364 original size:185 final size:184
Alignment explanation
Indices: 31521997--31522365 Score: 429
Period size: 185 Copynumber: 2.0 Consensus size: 184
31521987 GTTGACTTAG
* * ** * *
31521997 GCATACGAAGTTCATTCCCAGTCTAAGATTAGATTGGACCGAGGGTTGCGGCAGCAAGATCGATA
1 GCATACGAAGTTCATTCCCAATCTAAGATGAGACCGGACCGAGGGTTGCGACAGCAAGATCGACA
* ** *
31522062 GCACGCAGGGGGGACCGGCTCGATCCTCAGTTTACACATTCTTTCTCTTCGGCTGGCTGAGGGCC
66 GCACGCAGGGGGGACCGGCTCGATCCTCAGCTTACACATTCTGCCTCTTCAGCTGGCTGAGGGCC
* * * * *
31522127 TACACGCTCGTTTCGTGGGATGGCTTAGGCATACAGAGTTCATTCGATGTCTAA
131 CACACGCTCATTTCATAGGATGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * *
31522181 GCATACGGAGTTCATTCCTAATCTAAGATCGA-ACCGGACCGAGGGTTGCGATAGCAGGATCGAC
1 GCATACGAAGTTCATTCCCAATCTAAGAT-GAGACCGGACCGAGGGTTGCGACAGCAAGATCGAC
* *** * *
31522245 AGCACGCAGGGGTGGACCTGGC-CGATCCTCGGCTTGTGCGTTCTGCCTCTTCA-ATCGGCTGAG
65 AGCACGCAGGGG-GGACC-GGCTCGATCCTCAGCTTACACATTCTGCCTCTTCAGCT-GGCTGAG
* * *
31522308 TGCCCGCACGCTCATTTCATAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
127 GGCCCACACGCTCATTTCATAGGATGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
31522366 ACCCCAGCTG
Statistics
Matches: 153, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
184 65 0.42
185 85 0.56
186 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAATCTAAGATGAGACCGGACCGAGGGTTGCGACAGCAAGATCGACA
GCACGCAGGGGGGACCGGCTCGATCCTCAGCTTACACATTCTGCCTCTTCAGCTGGCTGAGGGCC
CACACGCTCATTTCATAGGATGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:31522554 original size:26 final size:26
Alignment explanation
Indices: 31522524--31522576 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31522514 GTTGACTTAG
* *
31522524 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* *
31522550 GCATACAGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
31522576 G
1 G
31522577 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:31523011 original size:158 final size:160
Alignment explanation
Indices: 31522645--31523048 Score: 397
Period size: 159 Copynumber: 2.5 Consensus size: 160
31522635 CAATCTTTGC
* * * * * *
31522645 CTTGTGCATTCTGCCTTTCCGATCGACTGAGTGCCCGCACGCTCATTTCATTGTTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* * * * * ***
31522710 ATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCAGACCGAGCGTTGTGGTAGCGGGATTGGCAG
66 ATACGGAGTTCATTCCCATGTCTAAGCCCCAGTCAAACCGAGCGTTGTAGCAGCAGGATCAACAG
** * *
31522774 CATGTAGAGGGGGACCGGGTCGATCCCCGG
131 CACATAGAGGGGGACAGGCTCGATCCCCGG
* * * * * * * * ** * *
31522804 CTTGCGCATTATGCCTCTTCGGCTGGCTCAGCGCCCACATGCTTGTTTCATGGGTTGACTTATGC
1 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
** * * *
31522869 ATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCAAACTGAGGGTTGTAGCAGCAGGATCAACA
66 ATACGGAGTTCATTCCCATGTCTAAGCCCCAG-TCAAACCGAGCGTTGTAGCAGCAGGATCAACA
*
31522932 GCACATAG-GGGGGATCAGGCT-GATCCTCGG
130 GCACATAGAGGGGGA-CAGGCTCGATCCCCGG
* *
31522962 CTTGCGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGGTTAGGC
1 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
*
31523027 ATACGGAGTTTATT-CCATGTCT
66 ATACGGAGTTCATTCCCATGTCT
31523049 GAGCATACGA
Statistics
Matches: 190, Mismatches: 51, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.02
158 84 0.44
159 100 0.53
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.27
Consensus pattern (160 bp):
CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCCATGTCTAAGCCCCAGTCAAACCGAGCGTTGTAGCAGCAGGATCAACAG
CACATAGAGGGGGACAGGCTCGATCCCCGG
Found at i:31524592 original size:26 final size:26
Alignment explanation
Indices: 31524555--31524607 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31524545 GCTGGCTTAG
*
31524555 GCATACGAAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31524581 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
31524607 G
1 G
31524608 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31525447 original size:26 final size:26
Alignment explanation
Indices: 31525411--31525463 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31525401 GTTGGCTGAG
31525411 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
31525437 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31525463 G
1 G
31525464 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31526343 original size:26 final size:26
Alignment explanation
Indices: 31526314--31526366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31526304 GTTGACTTAG
31526314 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
31526340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31526366 G
1 G
31526367 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31526577 original size:21 final size:21
Alignment explanation
Indices: 31526553--31526602 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
31526543 TTCTGGCAGC
31526553 GGGACCGACAGCACACAGAGG
1 GGGACCGACAGCACACAGAGG
**
31526574 GGGACCGACAGCATGCAGAGG
1 GGGACCGACAGCACACAGAGG
31526595 GGGACCGA
1 GGGACCGA
31526603 GCCAATCCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.42, T:0.02
Consensus pattern (21 bp):
GGGACCGACAGCACACAGAGG
Found at i:31528242 original size:26 final size:26
Alignment explanation
Indices: 31528213--31528265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31528203 GTTGACTTAG
31528213 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
31528239 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31528265 G
1 G
31528266 ATAAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31528566 original size:159 final size:158
Alignment explanation
Indices: 31528239--31528741 Score: 509
Period size: 159 Copynumber: 3.2 Consensus size: 158
31528229 CCCAATCTAA
* * * * *
31528239 GCATACGGAGTTCATTCCCA-GTCTAAGATAAGATCGGACTGAGGGTTGCGGCAATAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGTCGGATCGAC
* * * *
31528303 AGCACGCAGGGGGGAC-CGGACTGATCTTCAGCTTGCGTATTCTGCCTCTCCAGCCGGCTGAGCG
65 AGCACGCAGGGGGGACTGGGAC-GATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
31528367 TCCGCATGCCCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* ** *
31528397 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTCGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGTCGGATCGAC
* * * * * *
31528461 AGCACGCAGAGAGGGACTGGGTCGATCCTCAGCTTGCACATTAC-GCCTCTTCGGCCGGCTCAGT
65 AGCACGCAG-GGGGGACTGGGACGATCCTCAGCTTGCGCATT-CTGCCTCTCCGGCCGGCTGAGC
* * *
31528525 GCCCGCACGCTCGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
* ** *
31528556 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAAACCGAGGGTTGTGGCAG-CAGGATTGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGTC-GGATCGA
* * * ** *
31528619 CAGCACG-ATGGGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGTTGAG
64 CAGCACGCA--GGGGGGACTGGGACGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* *
31528683 CACCCGCACGCTCATTTTGTGGGTT-AGCTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGA-CTTAG
*
31528715 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31528742 CATATGGAGT
Statistics
Matches: 281, Mismatches: 51, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.01
158 65 0.23
159 207 0.74
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGTCGGATCGACA
GCACGCAGGGGGGACTGGGACGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:31528765 original size:26 final size:26
Alignment explanation
Indices: 31528715--31528767 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31528705 GTTAGCTTAG
*
31528715 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATATCTAA
*
31528741 GCATATGGAGTTCCTTTCCA-ATCTAA
1 GCATATGGAGTT-CATTCCATATCTAA
31528767 G
1 G
31528768 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATATCTAA
Found at i:31534957 original size:26 final size:26
Alignment explanation
Indices: 31534921--31534972 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31534911 GTTGGCTTAG
31534921 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
31534947 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31534973 AATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31536425 original size:159 final size:160
Alignment explanation
Indices: 31536142--31536639 Score: 398
Period size: 159 Copynumber: 3.1 Consensus size: 160
31536132 AAGCATACAT
* * * * * * * *
31536142 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGC
1 AGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCAGCAACAGGATCAACAACACGC
** * * * * ** ** * **
31536205 AGA-GGGGGACCAGATCGATCCCCGGCTTGCGCATTCTACCTTTCCGGTCAATTGAGTGCCCGTA
65 A-ACGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTCAACGCCCGTA
* *
31536269 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * ** *** * *
31536301 AGTTCATTCCATGTCTAAGCCCCAG-CCAGACCTAGGGTTGTTGCAGTGGGA-CTGACAACACGT
1 AGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCAGCAACAGGATC-AACAACACGC
* * * * * * *
31536364 AACGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTATTCCTTTTCGACCAGCTCAACGCCCGTAT
65 AACGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTCAACGCCCGTAC
* * * *
31536429 GCTCATTTCGTGGGTTGACTTATGCATATGG
130 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * *
31536460 AATTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCAGTAACAGGATCAACAGCATGC
1 AGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCAGCAACAGGATCAACAACACGC
** * * * * *
31536523 AGGGGGGGACCAGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCGTAC
65 AACGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTCAACGCCCGTAC
*
31536588 GCTCGTTTCGTGGGTTGGCTTAGGCATACGA
130 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
31536619 AGTTCATTCCATGTCTAAGCA
1 AGTTCATTCCATGTCTAAGCA
31536640 TACGGAGTTC
Statistics
Matches: 263, Mismatches: 67, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
158 11 0.04
159 244 0.93
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (160 bp):
AGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCAGCAACAGGATCAACAACACGCA
ACGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTCAACGCCCGTACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:31536640 original size:26 final size:26
Alignment explanation
Indices: 31536611--31536663 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31536601 GTTGGCTTAG
31536611 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
31536637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31536663 G
1 G
31536664 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31536761 original size:22 final size:22
Alignment explanation
Indices: 31536733--31536776 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
31536723 CTCAGGGCAA
* *
31536733 CATCGTCGGAGGATCGCTGGAG
1 CATCGTCGGAGCATCGCCGGAG
31536755 CATCGTCGGAGCATCGCCGGAG
1 CATCGTCGGAGCATCGCCGGAG
31536777 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.18, C:0.27, G:0.39, T:0.16
Consensus pattern (22 bp):
CATCGTCGGAGCATCGCCGGAG
Found at i:31536765 original size:11 final size:11
Alignment explanation
Indices: 31536733--31536776 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
31536723 CTCAGGGCAA
31536733 CATCGTCGGAG
1 CATCGTCGGAG
*
31536744 GATCG-CTGGAG
1 CATCGTC-GGAG
31536755 CATCGTCGGAG
1 CATCGTCGGAG
*
31536766 CATCGCCGGAG
1 CATCGTCGGAG
31536777 AGCCTAACCG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 1 0.04
11 26 0.93
12 1 0.04
ACGTcount: A:0.18, C:0.27, G:0.39, T:0.16
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:31537385 original size:26 final size:26
Alignment explanation
Indices: 31537356--31537408 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31537346 GTTGACTTAG
*
31537356 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31537382 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31537408 G
1 G
31537409 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31538541 original size:159 final size:160
Alignment explanation
Indices: 31538377--31538736 Score: 359
Period size: 159 Copynumber: 2.3 Consensus size: 160
31538367 CGCCTGTTTT
* * * * * *
31538377 GTGGGTTGGGTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCGCAG-CTGGATCAAGGGTTGTG
1 GTGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAAGCAGCAGACTGGACCAAGGGTTATG
* **** * * * *
31538441 GTAGTGGGACCGGCAACAAGTAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTAC-GCCTCT
66 GCAGCACAACCGACAACAAGTAGAGGGGGACCGGGCCAATCCCCGGCTTGCACATT-CTGCCTCT
*
31538505 TCGGCCAGCTCAACGCCCGCACGCTCACTTC
130 TCGACCAGCTCAACGCCCGCACGCTCACTTC
* * * * * *
31538536 GTGGGTTGACTTATGCAAATGGAGTACATTGCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTAT
1 GTGGGTTGGCTTAGGCAAACGGAGTTCATT-CCATGTCTAAGCAGCAGACTGGACCAAGGGTTAT
* * * * *
31538599 GGCAGCACAATCTACAGCATGTAGGGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCT
65 GGCAGCACAACCGACAACAAGTAGAGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCT
* * * * * **
31538664 TCGACCGGCTGAGCGCTCGTACGCTCGTTTC
130 TCGACCAGCTCAACGCCCGCACGCTCACTTC
*
31538695 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GTGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAAGC
31538737 GTACGGAGTT
Statistics
Matches: 158, Mismatches: 38, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
158 7 0.04
159 148 0.94
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (160 bp):
GTGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAAGCAGCAGACTGGACCAAGGGTTATG
GCAGCACAACCGACAACAAGTAGAGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTT
CGACCAGCTCAACGCCCGCACGCTCACTTC
Found at i:31538758 original size:26 final size:26
Alignment explanation
Indices: 31538712--31538761 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
31538702 GGCTTAGGCA
*
31538712 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATCCCATGTCTAAGCG
31538738 TACGGAGTTCATCCCCA-GTCTAAG
1 TACGGAGTTCAT-CCCATGTCTAAG
31538762 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCATGTCTAAGCG
Found at i:31539481 original size:26 final size:26
Alignment explanation
Indices: 31539442--31539494 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31539432 GTTGACTTAG
*
31539442 GCATACGGAATTCA-TCCCTAGTCTAA
1 GCATACAGAATTCATTCCC-AGTCTAA
*
31539468 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
31539494 G
1 G
31539495 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:31539756 original size:159 final size:156
Alignment explanation
Indices: 31539468--31540149 Score: 535
Period size: 158 Copynumber: 4.3 Consensus size: 156
31539458 CCTAGTCTAA
* * *** ** * ** *
31539468 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGCTAAAACCAGACCGAGGGTTGTGGCAGTGGGATAGGT
* * * * * * *
31539532 AGCACGCAGGGGGGATCGGATCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCATGCAGGGGAGATCGGGTCGATCCC-GACTTACGCATTATGCCTCTCCGGCCGGCTCAGCGC
* **
31539597 CCACACGCCCATTTCATGGGTTGGTTTAG
129 CCACACGCCC-GTTCATGGGTTGACTTAG
* ** * * *
31539626 GCATAGGGAGTTCATTCCATGTCTAAGCTGTAGCCAGACCGAGGGTTGTGGCAGTGGGATTGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCTAAAACCAGACCGAGGGTTGTGGCAGTGGGATAGGTA
* * *
31539691 ACATGCAGAGGGAGATCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCAGTCGGCTCAGCGC
66 GCATGCAG-GGGAGATCGGGTCGATCC-CGACTTACGCATTATGCCTCTCCGGCCGGCTCAGCGC
*
31539756 CCACACGCTCGTTCATGGGTTGACTTAG
129 CCACACGCCCGTTCATGGGTTGACTTAG
* * * * * * *
31539784 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGTAGGATAGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCTAAAACCAGACCGAGGGTTGTGGCAGTGGGATAGGT
* ** * * * * * *
31539848 AGCATGCAGGGGGGATCACGTCGATCACCGACTTACCCATTCTACCTCTCCGGCCGGTTGAGCAC
65 AGCATGCAGGGGAGATCGGGTCGATC-CCGACTTACGCATTATGCCTCTCCGGCCGGCTCAGCGC
** * * ** *
31539913 CCGTAAGCCTGTTTTGTGGGTTGGCTTAG
129 CCACACGCCCG-TTCATGGGTTGACTTAG
* * * * * * * **
31539942 GCATAGGGAGTTCATTCCATGTATAAGCCACAACCTGACCGAGGGTTGTGGCAGCGAGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCTAAAACCAGACCGAGGGTTGTGGCAGTGGGATAGGTA
** * * * * *
31540007 GCACACAGAGGGAGA-CGGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCTGCTCAGTG
66 GCATGCAG-GGGAGATCGGGTC-GAT-CCCGACTTACGCATTATGCCTCTCCGGCCGGCTCAGCG
* * *
31540071 CCCGCACGCTCGTTCGTGGGTTGACTTAG
128 CCCACACGCCCGTTCATGGGTTGACTTAG
* * * *
31540100 GCATACGGAGTTCATTTC-TAGTCTAAGATCAAACCAGACCAAGGGTTGTG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCTAAAACCAGACCGAGGGTTGTG
31540150 ACAGAAGGAC
Statistics
Matches: 407, Mismatches: 106, Indels: 22
0.76 0.20 0.04
Matches are distributed among these distances:
157 56 0.14
158 248 0.61
159 101 0.25
160 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCTAAAACCAGACCGAGGGTTGTGGCAGTGGGATAGGTA
GCATGCAGGGGAGATCGGGTCGATCCCGACTTACGCATTATGCCTCTCCGGCCGGCTCAGCGCCC
ACACGCCCGTTCATGGGTTGACTTAG
Found at i:31540147 original size:316 final size:316
Alignment explanation
Indices: 31539468--31540147 Score: 835
Period size: 316 Copynumber: 2.2 Consensus size: 316
31539458 CCTAGTCTAA
* ** * * * *
31539468 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATAGATA
* * * * *
31539533 GCACGCAGGGGGGATCGGATCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGATCCGATCGATCCCTGACTTACCCATTCTACCTCTCCGACCGGCTGAGCACC
* * * *** *
31539598 CACACGCCCATTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTGTAGCCAG
131 CACAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCACAACCAG
* * ** ** * *
31539663 ACCGAGGGTTGTGGCAGTGGGATTGGCAACATGCAGAGGGAGATCGGGTCGATCCTCGACTTACG
196 ACCGAGGGTTGTGGCAGCGAGACCGGCAACACACAGAGGGAGATCGGGGCGATCCCCGACTTACG
*
31539728 CATTATGCCTCTCCAGTCGGCTCAGCGCCCACACGCTCGTTCATGGGTTGACTTAG
261 CATTATGCCTCTCCAGCCGGCTCAGCGCCCACACGCTCGTTCATGGGTTGACTTAG
* * *
31539784 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGTAGGATAGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATAGATA
* * *
31539849 GCATGCAGGGGGGATCACG-TCGATCACC-GACTTACCCATTCTACCTCTCCGGCCGGTTGAGCA
66 GCACGCAGGGGGGATC-CGATCGATC-CCTGACTTACCCATTCTACCTCTCCGACCGGCTGAGCA
** ** **
31539912 CCCGTAAGCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCACAACC
129 CCCACAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCACAACC
* * * *
31539977 TGACCGAGGGTTGTGGCAGCGAGACCGGTAGCACACAGAGGGAGA-CGGGGCTGATCCCCGGCTT
194 AGACCGAGGGTTGTGGCAGCGAGACCGGCAACACACAGAGGGAGATCGGGGC-GATCCCCGACTT
* * * * * *
31540041 GCGCATTATGCCTCTCCGGCCTGCTCAGTGCCCGCACGCTCGTTCGTGGGTTGACTTAG
258 ACGCATTATGCCTCTCCAGCCGGCTCAGCGCCCACACGCTCGTTCATGGGTTGACTTAG
* * *
31540100 GCATACGGAGTTCATTTCTAGTCTAAGATCAAACCAGACCAAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTG
31540148 TGACAGAAGG
Statistics
Matches: 306, Mismatches: 55, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
315 5 0.02
316 298 0.97
317 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATAGATA
GCACGCAGGGGGGATCCGATCGATCCCTGACTTACCCATTCTACCTCTCCGACCGGCTGAGCACC
CACAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCACAACCAG
ACCGAGGGTTGTGGCAGCGAGACCGGCAACACACAGAGGGAGATCGGGGCGATCCCCGACTTACG
CATTATGCCTCTCCAGCCGGCTCAGCGCCCACACGCTCGTTCATGGGTTGACTTAG
Found at i:31540768 original size:157 final size:157
Alignment explanation
Indices: 31540515--31541011 Score: 550
Period size: 157 Copynumber: 3.2 Consensus size: 157
31540505 AGATCAGACC
** * * * * *
31540515 GGACCGAGGGTTACGGTAGCAGGATCGGTAGCACGCAGGGGGACCGGGTTGATCCCTGACTTGCG
1 GGACCGAGGGTTGTGGCAGTAGGACCGGTAGCACACAGGGGGACCGGGTTGATCCCTGGCTTGCG
* * * *
31540580 CATTCTTCCTCTCCGACCGACTGAGCGCCCGCAC-ATCGGTTTCGTGGGTTGGCTTAGGCATAGG
66 CATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACG
31540644 GAGTTCATTCCTTGTCTAAACCCCAACA
130 GAGTTCATTCCTTGTCTAAACCCCAACA
* * *
31540672 GGATCAAGGGTTGTGGCAGTGGGACCGGTAGCACACAGGGGGACCGGGTTGATCCCTGGCTTGCG
1 GGACCGAGGGTTGTGGCAGTAGGACCGGTAGCACACAGGGGGACCGGGTTGATCCCTGGCTTGCG
* * * * * * * *
31540737 CATTATGCCTTTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA
66 CATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
31540802 AGTTCATTCCTAGTTTAAGA-TCGAACCA
131 AGTTCATTCCTTGTCTAA-ACCCCAA-CA
** * * * * * *
31540830 -GACCGAGGGTTGTGGCAACAGGATCGATAGCACACAGGGTGGACCAGGTCGATCCCCGGCTTGT
1 GGACCGAGGGTTGTGGCAGTAGGACCGGTAGCACACAGGG-GGACCGGGTTGATCCCTGGCTTGC
* * * *
31540894 ACATTTTGCCTCTCCGACCTACTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
65 GCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * *
31540959 GAGTTAATTCCATGTCTAAGCCCCAACT
130 GAGTTCATTCCTTGTCTAAACCCCAACA
*
31540987 GGACCGAGGGTTGTGGTAGTAGGAC
1 GGACCGAGGGTTGTGGCAGTAGGAC
31541012 TGGCAGCAGG
Statistics
Matches: 273, Mismatches: 61, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
157 157 0.58
158 116 0.42
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GGACCGAGGGTTGTGGCAGTAGGACCGGTAGCACACAGGGGGACCGGGTTGATCCCTGGCTTGCG
CATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCTTGTCTAAACCCCAACA
Found at i:31541166 original size:26 final size:26
Alignment explanation
Indices: 31541137--31541188 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
31541127 TTGACTTAGA
31541137 CATACAGAGTTCATTCGCAGTCTAAG
1 CATACAGAGTTCATTCGCAGTCTAAG
*
31541163 CATACAGAGTTCATTCTCAGTCTAAG
1 CATACAGAGTTCATTCGCAGTCTAAG
31541189 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCGCAGTCTAAG
Found at i:31541237 original size:682 final size:680
Alignment explanation
Indices: 31539784--31541663 Score: 2103
Period size: 682 Copynumber: 2.7 Consensus size: 680
31539774 GTTGACTTAG
* * * * *
31539784 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGTAGGATAGATA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATAGGTA
* * * * * * *
31539849 GCATGCAGGGGGGATCACGTCGATCACCGACTTACCCATTCTACCTCTCCGGCCGGTTGAGCACC
66 GCATGCAGGGGGGACCAGGTCGATC-CCGACTTGCGCATTCTTCCTCTCCGACCGGTTGAGCGCC
* * * * *
31539914 CGTA-AGCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCACAACCT
130 CGCACA-CCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA-CA
* * * *
31539978 GACCGAGGGTTGTGGCAGCGAGACCGGTAGCACACAGAGGGAGACGGGGCTGATCCCCGGCTTGC
193 GA-CGAGGGTTGTGGCAGCGGGACCGGTAGCACACAG-GGG-GACCGGGTTGATCCCTGGCTTGC
* * * *
31540043 GCATTATGCCTCTCCGGCCTGCTCAGTGCCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATACG
255 GCATTATGCCTTTTCGGCCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
31540107 GAGTTCATTTCTAGTCTAAGATCAAACCAGACCAAGGGTTGTGACAGAAGGACCAACAGCAGGAT
320 GAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGT-------GG--C-A-A-CAGGAT
* * * * *
31540172 CGACAGGATGCAGGGGGGATCGGGTCGATCCATGGCTTGCGCATTCTGCCTCCCCGA-CTGGCTG
373 CGATAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCT-GCTG
* *
31540236 AGTGCCCGCACGCTCGTTTCGTGGGTTGGCTCT-GGCATACGGAGTTCATTGCATGTCTAAGCCC
437 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCT-TAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * *
31540300 CAGTCGGACCGAGGGTTGTGGCAGTAGGACCGGTAGCAGGATCAGTAGCACGCAGAGGGGGATCG
501 CACTCGGACCGAGGGTTGTGGCAGTAGGACCGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCG
* * * * **
31540365 AGCTGATCCTCGGCTTGGGCATTACGCCTCTCCGACCGAGCACTCCGGTCGGTTGAATGCCCACA
566 AGCTGATCCTCGGCTTGGGCATTACACCTCTCCAACCGAGCACTCCCGACGACTGAATGCCCACA
** * **
31540430 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAA
631 CGCTCGTTTCACGGGTTGACTTAGACATACAGAGTTCATCCCCAGTCTAA
* * * *
31540480 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGTA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATAGGTA
* * * **
31540545 GCACGCA-GGGGGACCGGGTTGATCCCTGACTTGCGCATTCTTCCTCTCCGACCGACTGAGCGCC
66 GCATGCAGGGGGGACCAGGTCGATCCC-GACTTGCGCATTCTTCCTCTCCGACCGGTTGAGCGCC
* * * *
31540609 CGCACATCGGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAACCCCAACAGG
130 CGCACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACA-G
* *
31540674 ATCAAGGGTTGTGGCAGTGGGACCGGTAGCACACAGGGGGACCGGGTTGATCCCTGGCTTGCGCA
194 A-CGAGGGTTGTGGCAGCGGGACCGGTAGCACACAGGGGGACCGGGTTGATCCCTGGCTTGCGCA
* * * * *
31540739 TTATGCCTTTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAG
258 TTATGCCTTTTCGGCCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* *
31540804 TTCATTCCTAGTTTAAGATCGAACCAGACCGAGGGTTGTGGCAACAGGATCGATAGCACACAGGG
323 TTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAACAGGATCGATAGCACGCAGGG
* * * * ** * * *
31540869 TGGACCAGGTCGATCCCCGGCTTGTACATTTTGCCTCTCCGACCTACTGAGCGTCCGCACGCTCG
388 GGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAGCGCCCGCACGCTCG
*
31540934 TTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCCCCAACT-GGACCGAGGGT
453 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC-ACTCGGACCGAGGGT
* * *
31540998 TGTGGTAGTAGGACTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCGAGCTGATCC-CTGGCT
517 TGTGGCAGTAGGACCGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCGAGCTGATCCTC-GGCT
* * * * **
31541062 TGTGCATTATATCTCTCCAACCG-GC-CTCTCCGACAGACTGAGTGCCTGCACGCTCGTTTCACG
581 TGGGCATTACACCTCTCCAACCGAGCACTC-CCGAC-GACTGAATGCCCACACGCTCGTTTCACG
* *
31541125 GGTTGACTTAGACATACAGAGTTCATTCGCAGTCTAA
644 GGTTGACTTAGACATACAGAGTTCATCCCCAGTCTAA
* * * * *
31541162 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATTGGCA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATAGGTA
* * * ** *
31541227 GCATGCAGGGGGGACCAGGCCGATCCCCACCTTGCGGATT-TTGCCTCTCC-AGTTGGTTGAGTG
66 GCATGCAGGGGGGACCAGGTCGATCCCGA-CTTGCGCATTCTT-CCTCTCCGA-CCGGTTGAGCG
* * * * *
31541290 CCCGCACGCCTCTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
128 CCCGCACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-AC
** * ** *
31541355 AGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATTGGGTCGAT-CCTCGGCTT
192 AGAC-GAGGGTTGTGGCAGCGGGACCGGTAGCAC--ACAGGGGGACCGGGTTGATCCCT-GGCTT
* * * * * * *
31541419 GCGCATTATGCCTTTTCGGTCAACTCAGCGCCCGAACACTCGTTTTGTGGTTTCACTTAGGCATA
253 GCGCATTATGCCTTTTCGGCCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * ** * * * **
31541484 CGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGACAGCAGGATCAATATTACG
318 CGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAACAGGATCGATAGCACG
* * * * * *
31541549 TAGGGGGGATCGGGTCGAT-CCTAGCTTACGCATTCTGCCTCTCCTACCCGCTGAGCGCCCGTAC
383 CAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAGCGCCCGCAC
*
31541613 GCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
448 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31541664 ATACGAAGTT
Statistics
Matches: 995, Mismatches: 170, Indels: 50
0.82 0.14 0.04
Matches are distributed among these distances:
680 3 0.00
681 7 0.01
682 319 0.32
683 124 0.12
684 89 0.09
685 141 0.14
687 2 0.00
693 54 0.05
694 66 0.07
695 127 0.13
696 63 0.06
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (680 bp):
GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATAGGTA
GCATGCAGGGGGGACCAGGTCGATCCCGACTTGCGCATTCTTCCTCTCCGACCGGTTGAGCGCCC
GCACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACAGAC
GAGGGTTGTGGCAGCGGGACCGGTAGCACACAGGGGGACCGGGTTGATCCCTGGCTTGCGCATTA
TGCCTTTTCGGCCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAACAGGATCGATAGCACGCAGGGGGG
ATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACTCGGACCGAGGGTTGTG
GCAGTAGGACCGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCGAGCTGATCCTCGGCTTGGGC
ATTACACCTCTCCAACCGAGCACTCCCGACGACTGAATGCCCACACGCTCGTTTCACGGGTTGAC
TTAGACATACAGAGTTCATCCCCAGTCTAA
Found at i:31541524 original size:159 final size:157
Alignment explanation
Indices: 31541302--31541662 Score: 350
Period size: 157 Copynumber: 2.3 Consensus size: 157
31541292 CGCACGCCTC
* * * ** * ** *
31541302 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGA-CTGAGGGT
1 TTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAATCGGATC-GAGGGT
** * * * * * *
31541366 TGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTATGCC
65 TACGACAGCAGGACCAACAGCACGTAG-GGGGGATCGGGTCGATCCT-AGCTTACGCATTATGCC
* * **
31541431 TTTTCGGTCAACTCAGCGCCCGAACACTCG
128 TCTCCGACCAACTCAGCGCCCGAACACTCG
* *
31541461 TTTTGTGGTTTCA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGATCGAGGG
1 TTTCGTGGGTT-AGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGAATCGGATCGAGGG
* * ** *
31541524 TTACGACAGCAGGATCAATATTACGTAGGGGGGATCGGGTCGATCCTAGCTTACGCATTCTGCCT
64 TTACGACAGCAGGACCAACAGCACGTAGGGGGGATCGGGTCGATCCTAGCTTACGCATTATGCCT
* ** * * *
31541589 CTCCTACCCGCTGAGCGCCCGTACGCTCG
129 CTCCGACCAACTCAGCGCCCGAACACTCG
31541618 TTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
31541663 CATACGAAGT
Statistics
Matches: 161, Mismatches: 36, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.02
157 71 0.44
158 18 0.11
159 64 0.40
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (157 bp):
TTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAATCGGATCGAGGGTT
ACGACAGCAGGACCAACAGCACGTAGGGGGGATCGGGTCGATCCTAGCTTACGCATTATGCCTCT
CCGACCAACTCAGCGCCCGAACACTCG
Found at i:31541665 original size:26 final size:26
Alignment explanation
Indices: 31541636--31541688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31541626 GTTAGCTTAG
*
31541636 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31541662 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31541688 G
1 G
31541689 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31541871 original size:26 final size:26
Alignment explanation
Indices: 31541832--31541882 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
31541822 GTTGACTTAG
*
31541832 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
31541858 GCATACGGATTTCATTCCCAATCTA
1 GCATACGAAGTTCATCCCCAATCTA
31541883 TGATCAAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31542333 original size:159 final size:159
Alignment explanation
Indices: 31541930--31542520 Score: 539
Period size: 159 Copynumber: 3.7 Consensus size: 159
31541920 GTAGCACGTA
* * * * *
31541930 AGGGGGA-TCGGGCCGATCCCCAGCTTGCGCATTCTGCATCTCTGACCGGCTGAGTGCCCGTACG
1 AGGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACG
* * * * *
31541994 C-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCCTTCCATTTCTAAGCCCCAGCTGGACCGA
65 CTC-GTTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
*
31542058 GGGTTGTGGCAGCAGGACCGGCAGCACGCAG
129 GGGTTGTGGCAGCAGGACCGGCAGCATGCAG
* * * * ** * * * * *
31542089 AGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTTTCCGGCCAACTAAGAGGCTGCCCGC
1 AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGC
* * * * *
31542154 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
66 TCGTTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
*
31542219 GTTGTGGCAGCGGGACCGGCAGCATGCAG
131 GTTGTGGCAGCAGGACCGGCAGCATGCAG
* ** * * * *
31542248 AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTTGGTCGGTTCAGTGCCCGAACGC
1 AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGC
* * * ** * *
31542313 TCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCGGACCGGACAGA
66 TCGTTTCATGGCTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGA
* * ** *
31542376 GGGTTGTGACAGCAAGATTGACAGCATGCTAG
129 GGGTTGTGGCAGCAGGACCGGCAGCATGC-AG
* * * * * ** * *
31542408 -GGGGGACAGGGTCGGTCCTCGGCTT-CTGCATTCTACCTCTCCGGTTGGTTGAGCGCCCGCACG
1 AGGGGGACTGGGTCGATCCCCAGCTTGC-GCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACG
* * *
31542471 CTTGTTTCGTGGGC-TGGCTTAGGGATACGGAGTTCATTCCATGTCTAAGC
65 CTCGTTTCAT-GGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31542521 ATATGGAGTT
Statistics
Matches: 349, Mismatches: 74, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
158 6 0.02
159 334 0.96
160 9 0.03
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGC
TCGTTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
GTTGTGGCAGCAGGACCGGCAGCATGCAG
Done.