Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 343 of 402
Found at i:31542726 original size:26 final size:26
Alignment explanation
Indices: 31542687--31542737 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31542677 TGGGTTGACT
31542687 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
31542713 TAAGCATACGGAGTTCATTCCCAGT
1 TAAGCATACAGAGTTCATCCCCAGT
31542738 AAAAATTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:31542902 original size:26 final size:26
Alignment explanation
Indices: 31542873--31542925 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31542863 GTTGGCTGAG
*
31542873 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31542899 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31542925 G
1 G
31542926 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31543522 original size:26 final size:26
Alignment explanation
Indices: 31543472--31543524 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31543462 GTTGGCTTAG
*
31543472 GCATACAGAGTTCATTCGATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
31543498 GCATACAGAGTTCATTCCCAT-TCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
31543524 G
1 G
31543525 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:31544248 original size:159 final size:158
Alignment explanation
Indices: 31543886--31544260 Score: 346
Period size: 159 Copynumber: 2.4 Consensus size: 158
31543876 AAGCAAACGG
* * * * * * *
31543886 AGTTCATTCCCAATCTAAGATCGAATCGGACTGAGGGTTGCGACAACAGGATCGACAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTGCGGCAGCAGGACCGACAGCACACAG
* * * *
31543951 GGGGGACCGAGCCGATCTCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCGCGCACGTGCC
66 GGGGGACCGAGCCGATCTCCGGCTTGCACATTATGCCTATCCGACCGACTCAGCGCGCACGTGCC
* * * * *
31544016 CGTTTTATGTGTTGGCTTAGGCATAGGG
131 CGTTTCATGGGTTGACTTAGGCATACGA
* * ** ** * * * * * *
31544044 AGTTCCTTTCGTGTCTAAGCCCCAGCAAGATCGAGGGTTGTGGCAGC-GAGACCGGCAGCACACA
1 AGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTGCGGCAGCAG-GACCGACAGCACACA
* * *
31544108 GAGGGGGACCGGGCTCG-TC-CCTGGCTTGCACATTATGCCTATCCGACCGGCTCAGTGC-C-CG
65 G-GGGGGACCGAGC-CGATCTCC-GGCTTGCACATTATGCCTATCCGACCGACTCAGCGCGCACG
*
31544169 TACGCTCGTTTCATGGGTTGACTTAGGCATACGA
127 T--GCCCGTTTCATGGGTTGACTTAGGCATACGA
* * *
31544203 AGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTACGGCAGTAGGATCGACAG
1 AGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTGCGGCAGCAGGACCGACAG
31544261 TACGTCTGGG
Statistics
Matches: 163, Mismatches: 47, Indels: 13
0.73 0.21 0.06
Matches are distributed among these distances:
157 4 0.02
158 47 0.29
159 109 0.67
160 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGAACCAGATTGAGGGTTGCGGCAGCAGGACCGACAGCACACAG
GGGGGACCGAGCCGATCTCCGGCTTGCACATTATGCCTATCCGACCGACTCAGCGCGCACGTGCC
CGTTTCATGGGTTGACTTAGGCATACGA
Found at i:31544715 original size:172 final size:170
Alignment explanation
Indices: 31544520--31545092 Score: 457
Period size: 172 Copynumber: 3.3 Consensus size: 170
31544510 CGGTTGAACA
* *
31544520 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
* *
31544585 GGACCGAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGACTGGGTTGATCCTCAGCCTA
66 AGACCGAGGGTTGTGGTAGCAGGATCGGTAGCATGCAGAGGGGGACTGGG-TGATCCTCAGCCTA
31544650 TGCATTATGCCTCACCGACCGACCTCTCCGGTCGGCTAAGTG
130 TGCATTATGCCTCA-CGACCGACCTCTCCGGTCGGCTAAGTG
* * * **
31544692 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGTATACGG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAG---CCCC
** * ** * * *
31544756 AGTTCATTCCCA--GTCTAAGATCAG-ATCGGATCAAGGGTTGCGATAGCAGGATCGGTAGCGCA
62 AG-TCAGACCGAGGGT-TGTGGT-AGCA--GGATC---GGTAGC-AT-GCA-GA--GG--G-GGA
* * * * * * * ** * * *
31544818 CAGAGGGGAT--TGAGCCGAT-C-CT-TGGCTTACGCATTTTG-CCTCCCCGATCGGCTAAGCG
111 CTG-GGTGATCCTCAGCCTATGCATTATGCCTCACG-A--CCGACCTCTCCGGTCGGCTAAGTG
* * *
31544876 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
31544941 AGACCGAGGGTTGTGG-AGGCAGGATCGGTAGCATGCAGAGAGGGACTGGGCTGATCCCCAACCT
66 AGACCGAGGGTTGTGGTA-GCAGGATCGGTAGCATGCAGAGGGGGACTGGG-TGATCCTCAGCCT
*
31545005 ATGCATTATGCCTCATCGACCAACCTCTCCGGTCGGCTAAGTG
129 ATGCATTATGCCTCA-CGACCGACCTCTCCGGTCGGCTAAGTG
* * *
31545048 CCCGTACGCTCGTTTCCTAGGTTGACTTAGGCATACGGAGTTCAT
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
31545093 CCCCAATCTA
Statistics
Matches: 297, Mismatches: 67, Indels: 74
0.68 0.15 0.17
Matches are distributed among these distances:
167 2 0.01
168 7 0.02
169 1 0.00
170 5 0.02
171 2 0.01
172 106 0.36
173 11 0.04
174 7 0.02
175 9 0.03
176 12 0.04
177 5 0.02
179 6 0.02
180 11 0.04
181 8 0.03
182 7 0.02
183 11 0.04
184 66 0.22
185 4 0.01
186 7 0.02
187 1 0.00
188 7 0.02
189 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (170 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
AGACCGAGGGTTGTGGTAGCAGGATCGGTAGCATGCAGAGGGGGACTGGGTGATCCTCAGCCTAT
GCATTATGCCTCACGACCGACCTCTCCGGTCGGCTAAGTG
Found at i:31544754 original size:26 final size:26
Alignment explanation
Indices: 31544724--31544774 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
31544714 TGACTTAGGC
31544724 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
31544750 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
31544775 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:31544902 original size:870 final size:861
Alignment explanation
Indices: 31543080--31544956 Score: 2057
Period size: 870 Copynumber: 2.2 Consensus size: 861
31543070 GCATGCAGGA
* * * * * * * *
31543080 GGGACCGGGCTGATC-CCTGGCTTACGCATTCTGCCT-CTCTAGCCGACTGAGCACCCGCACGCC
1 GGGACCGAGCCGATCTCC-GGCTTACACATTCTGCCTCCCCGA-TCGACTAAGCGCCCGCACGCC
* * *
31543143 GGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCTAGCCAGACCGAGCG
64 -GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGACCGAGGG
* * ** *
31543208 TTGTGGCAGCGGGACCGACAGCGCACAGAGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGC
127 TTGTGGCAGCGAGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGC
* * * * * *
31543273 CTCTTCGACTGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATT
192 CTATCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATT
*
31543338 CCCAGTCTAAGATCAGACTGGACCAAGCATCAGGATCGACAACATACAGGGGGGATCGGGTCGAT
257 CCCAGTCTAAGATCAGACTGGACCAAGCATCAGGATCGACAACATACAGGGGGGATCGGGCCGAT
* * * *
31543403 AATCGGCTTACGCGTTTTACCTCTCCGATAGACTGACCGCCCGCCCGCTCGTTTTATGGGTTGGC
322 AACCGGCTTA-GCGTTTTACCTCTCCGATAGACTGACCACCCGCACGCTCGTTTCATGGGTTGGC
* * *
31543468 TTAGGCATACAGAGTTCATTCGATGTCTAAGCATACAGAGTTCATTCCCATTCTAAGATCAGATC
386 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
31543533 AGACCGAGGGTTAAGACAGCAGGACCAGCAGCAGGATCAACAGTATGCAGGGGGGACCGAGTCGG
451 AGACCGAGGGTTAAGACACCAAGACCAGCAGCAGGATCAACAGCACGCAGAGGGGACCGAATCGG
* * *
31543598 TCCCCGATTTACACATTCTACCTCTCCGACCGGCTGAGCACCTGCACACTCATTTCGTAGGTTGG
516 TCCCCGACTTACACATTCTACCTCTCCGACCGGCTGAACACCCGCACACTCATTTCGTAGGTTGG
*
31543663 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAAAGGGTTGTGGTAGCAGGAC
581 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAAAGGGTTGTGGTA--AGG--
* * *
31543728 CAACAGTGGGATCGACAGCACACAGATGAGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTC
642 --ACA--GGGATCGACAGCACACAGAGGAGGATCGGGCTGATCCCAGCCTT-CGCATTATGCCTC
* * * * * **
31543793 TCCAGCCGACCTCTCTGGCCAGCTGAGCGCCTGCACGCTTGTTTTGTAGGTTGACTTAGGCATAC
702 ACCAGCCGACCTCTCCGGCCAGCTAAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATAC
*
31543858 GGAGTACATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAATCTAAGATCGAATCGGACTGAGGG
767 GGAGTACATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAATCTAAGATCGAATCGGACTAAGGG
*
31543923 TTGCGACAACAGGATCGACAGCACACAGGG
832 TTGCGACAACAGGATCGACAGCACACAGAG
* * *
31543953 GGGACCGAGCCGATCTCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCG--CGCACGTGCC
1 GGGACCGAGCCGATCTCCGGCTTACACATTCTGCCTCCCCGATCGACTAAGCGCCCGCAC--G-C
* * * * * *
31544016 CGTTTTATGTGTTGGCTTAGGCATAGGGAGTTCCTTTCGTGTCTAAGCCCCAGCAAGATCGAGGG
63 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC-AGACCGAGGG
* *
31544081 TTGTGGCAGCGAGACCGGCAGCACACAGAGGGGGACCGGGCTCG-TCCCTGGCTTGCACATTATG
127 TTGTGGCAGCGAGACCGACAGCACACAGAGGGGGACCGGG-TCGATCCCCGGCTTGCACATTATG
* * *
31544145 CCTATCCGACCGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
191 CCTATCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCAT
* *** * * *
31544210 TCCCAGTCTAAGATCGAACCAGATTGAGGGTTACGGCAGT-AGGATCGACAGTACGT-C-TGGGG
256 TCCCAGTCTAAGAT-----CAGACT--GGACCA-AGCA-TCAGGATCGACA--ACATACAGGGGG
** * * * * *
31544272 GATCGGGCCGATCCCCAGG-TT-GCGTATTCTGCCTCTCCGATCGATTGAGCATCCGCACGCTCG
310 GATCGGGCCGATAACC-GGCTTAGCGT-TT-TACCTCTCCGATAGACTGACCACCCGCACGCTCG
* * * *
31544335 TTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCATACGGAGTTCATTCCCAG
372 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAG
* * * *
31544400 TCTAAGATCGGACCAGACCGAGGGTTACGACCCCAAGACCAGCAGCAGGATCGACAGCACGCAGA
437 TCTAAGATCAGACCAGACCGAGGGTTAAGACACCAAGACCAGCAGCAGGATCAACAGCACGCAG-
* * * * * * ** * *
31544465 AGGGGACCGAATCGGTCCTCGGCTTGCGCATTTTACCTCTCTGGTCGGTTGAACACCCGCACGCT
501 AGGGGACCGAATCGGTCCCCGACTTACACATTCTACCTCTCCGACCGGCTGAACACCCGCACACT
* * **
31544530 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
566 CATTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAAAGGG
* ** * *
31544595 TTGTGGT-A-G-CA-GGATCGGCAGCATGCAGAGGGGGA-CTGGGTTGATCCTCAGCCTAT-GCA
631 TTGTGGTAAGGACAGGGATCGACAGCACACAGAGGAGGATC-GGGCTGATCC-CAGCCT-TCGCA
* * * *
31544654 TTATGCCTCACC-GACCGACCTCTCCGGTCGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGAC
693 TTATGCCTCACCAG-CCGACCTCTCCGGCCAGCTAAGCGCCCGCACGCTCGTTTCATAGGTTGAC
* * * *
31544718 TTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATC-AGAT
757 TTAGGCATACGGAGTACATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAATCTAAGATCGA-AT
* * ** *
31544782 CGGA-TCAAGGGTTGCGATAGCAGGATCGGTAGCGCACAGAG
821 CGGACT-AAGGGTTGCGACAACAGGATCGACAGCACACAGAG
** * * * *
31544823 GGGATTGAGCCGATC-CTTGGCTTACGCATTTTGCCTCCCCGATCGGCTAAGCGCCCGCACGCTC
1 GGGACCGAGCCGATCTC-CGGCTTACACATTCTGCCTCCCCGATCGACTAAGCGCCCGCACGC-C
* * * *
31544887 GTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
64 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGACCGAGGGT
31544952 TGTGG
128 TGTGG
31544957 AGGCAGGATC
Statistics
Matches: 834, Mismatches: 137, Indels: 69
0.80 0.13 0.07
Matches are distributed among these distances:
869 6 0.01
870 274 0.33
871 10 0.01
872 7 0.01
873 217 0.26
874 9 0.01
878 6 0.01
879 5 0.01
880 5 0.01
881 171 0.21
882 121 0.15
883 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (861 bp):
GGGACCGAGCCGATCTCCGGCTTACACATTCTGCCTCCCCGATCGACTAAGCGCCCGCACGCCGT
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGACCGAGGGTTGT
GGCAGCGAGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTAT
CCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA
GTCTAAGATCAGACTGGACCAAGCATCAGGATCGACAACATACAGGGGGGATCGGGCCGATAACC
GGCTTAGCGTTTTACCTCTCCGATAGACTGACCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
GAGGGTTAAGACACCAAGACCAGCAGCAGGATCAACAGCACGCAGAGGGGACCGAATCGGTCCCC
GACTTACACATTCTACCTCTCCGACCGGCTGAACACCCGCACACTCATTTCGTAGGTTGGCTTAG
GCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAAAGGGTTGTGGTAAGGACAGGGATC
GACAGCACACAGAGGAGGATCGGGCTGATCCCAGCCTTCGCATTATGCCTCACCAGCCGACCTCT
CCGGCCAGCTAAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTACATCCCCA
GTCTAAGCAAACGGAGTTCATTCCCAATCTAAGATCGAATCGGACTAAGGGTTGCGACAACAGGA
TCGACAGCACACAGAG
Found at i:31544976 original size:356 final size:356
Alignment explanation
Indices: 31544324--31545374 Score: 1286
Period size: 356 Copynumber: 2.9 Consensus size: 356
31544314 GATTGAGCAT
* * * * *
31544324 CCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTATGCATACGGA
1 CCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGCATACGGA
* * * * * *
31544388 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACCCCAAGACCAGCAGCAGGATCG
65 GTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTT--G----C--GA-TAGCA--A-GATCG
** * * * * * * * * * * * * *
31544453 ACAGCACGCAGAAGGGGACCGAATCGGTCCTCGGCTTGCGCATTTTACCTCTCTGGTCGGTTGAA
118 GTAGCACACAG-AGGGGATCAAACCGATCCCCGGCTTACGCATTCTGCCTCCCCGATCGGCT-AA
31544518 -CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCCC
181 GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCC
* * * * *
31544581 AGTCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGACTGGGTTGATCCTCAG
245 AGTCAGACCGAGGGTTGTGGAAGCAGGATCGGTAGCATGCAGAGGGGGACTGGGCTGATCCCCAG
*
31544646 CCTATGCATTATGCCTCACCGACCGACCTCTCCGGTCGGCTAAGTGC
310 CCTATGCATTATGCCTCACCGACCAACCTCTCCGGTCGGCTAAGTGC
* * *
31544693 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAG
1 CCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAG
* *
31544758 TTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGATAGCAGGATCGGTAGCGCACAGAG
66 TTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGATAGCAAGATCGGTAGCACACAGAG
** * ** * *
31544823 GGGATTGAGCCGATCCTTGGCTTACGCATTTTGCCTCCCCGATCGGCTAAGCGCCCGCACGCTCG
131 GGGATCAAACCGATCCCCGGCTTACGCATTCTGCCTCCCCGATCGGCTAAGCACCCGCACGCTCG
*
31544888 TTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
196 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
* * *
31544953 GTGGAGGCAGGATCGGTAGCATGCAGAGAGGGACTGGGCTGATCCCCAACCTATGCATTATGCCT
261 GTGGAAGCAGGATCGGTAGCATGCAGAGGGGGACTGGGCTGATCCCCAGCCTATGCATTATGCCT
*
31545018 CATCGACCAACCTCTCCGGTCGGCTAAGTGC
326 CACCGACCAACCTCTCCGGTCGGCTAAGTGC
* *
31545049 CCGTACGCTCGTTTCCTAGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAG
1 CCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAG
* * *
31545114 TTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAAGATCGGTAGCACACAGGG
66 TTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGATAGCAAGATCGGTAGCACACAGAG
* * * *
31545179 GGGATCAAACTGATCCCCGGCTTACGCATTCTGCCTCCCCGGTCGGCTAAGCACTCGCACGCCCG
131 GGGATCAAACCGATCCCCGGCTTACGCATTCTGCCTCCCCGATCGGCTAAGCACCCGCACGCTCG
* * * *
31545244 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTT
196 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
* * * * *
31545309 GTGGCAATG--GGACCGGTAGCACGTAGAGGGGGA-TCGGGCTGATCCCCAGCTTGTGCATTATG
261 GTGG-AA-GCAGGATCGGTAGCATGCAGAGGGGGACT-GGGCTGATCCCCAGCCTATGCATTATG
31545371 CCTC
323 CCTC
31545375 TTCAATCGGC
Statistics
Matches: 602, Mismatches: 74, Indels: 25
0.86 0.11 0.04
Matches are distributed among these distances:
355 3 0.00
356 485 0.81
357 14 0.02
358 1 0.00
360 4 0.01
361 2 0.00
363 1 0.00
367 1 0.00
369 88 0.15
370 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (356 bp):
CCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGATAGCAAGATCGGTAGCACACAGAG
GGGATCAAACCGATCCCCGGCTTACGCATTCTGCCTCCCCGATCGGCTAAGCACCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
GTGGAAGCAGGATCGGTAGCATGCAGAGGGGGACTGGGCTGATCCCCAGCCTATGCATTATGCCT
CACCGACCAACCTCTCCGGTCGGCTAAGTGC
Found at i:31545107 original size:26 final size:26
Alignment explanation
Indices: 31545078--31545130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31545068 GTTGACTTAG
31545078 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
31545104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31545130 G
1 G
31545131 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31545411 original size:159 final size:159
Alignment explanation
Indices: 31545188--31545607 Score: 391
Period size: 159 Copynumber: 2.6 Consensus size: 159
31545178 GGGGATCAAA
* * * * *** * * * *
31545188 CTGATCCCCGGCTTACGCATTCTGCCTCCCCGGTCGGCTAAGCACTCGCACGCCCGTTTCGTGGG
1 CTGATCCCCGACTTATGCATTATGCCTCTCCAACCGGCTGAGCACCCACACGCTCGTTTCGTGGG
* * *
31545253 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGA-TCGAGGGTTGTGGCAA
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACT-GAGGGTTGCGGCAA
** ** * * *
31545316 TGGGACCGGTAGCACGTAGAGGGGGATCGGG
130 CAGGACCGACAACACGTAGA-GGGGACCAGG
* * * * * **
31545347 CTGATCCCC-AGCTTGTGCATTATGCCTCTTCAATCGGCTTAGCTCCCGTACGCTCGTTTCGTGG
1 CTGATCCCCGA-CTTATGCATTATGCCTCTCCAACCGGCTGAGCACCCACACGCTCGTTTCGTGG
* * * * *
31545411 GTTGACTTATGCATACGGAGTTCATTCC-TAGTGTAAG-ATCAGACCAGACTGAGGGTTGCGGTA
65 GTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACTGAGGGTTGCGGCA
* *
31545474 GCAGGATCGACAACACGTAGAGGGGACCAGG
129 ACAGGACCGACAACACGTAGAGGGGACCAGG
* * ** *
31545505 CTGATCTCCGACTTATGCATTTTGCCTCTCCTGCCGGCTGAGCACCCACACGCTCGTTTCATGGG
1 CTGATCCCCGACTTATGCATTATGCCTCTCCAACCGGCTGAGCACCCACACGCTCGTTTCGTGGG
* *
31545570 TTGGCTTAGGCATACAGAGTTCCTTCCATGTCTAAGCA
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
31545608 TATGGAGTTC
Statistics
Matches: 207, Mismatches: 47, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
158 92 0.44
159 114 0.55
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (159 bp):
CTGATCCCCGACTTATGCATTATGCCTCTCCAACCGGCTGAGCACCCACACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGCGGCAAC
AGGACCGACAACACGTAGAGGGGACCAGG
Found at i:31545583 original size:158 final size:156
Alignment explanation
Indices: 31545104--31545605 Score: 459
Period size: 158 Copynumber: 3.2 Consensus size: 156
31545094 CCCAATCTAA
* * * * *
31545104 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAAGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGTA
** * ** * * * * * *
31545169 GCACACAGGGGGGATCAAACTGATCCCCGGCTTACGCATTCTGCCTCCCCGGTCGGCTAAGCACT
65 GCACGTAGAGGGGATCAGGCTGAT-CCCGACTTATGCATTATGCCTCTCCAGTCGGCTAAGCACC
*
31545234 CGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *** *
31545262 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAATGGGACCGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGT
* * * * * * *
31545326 AGCACGTAGAGGGGGATCGGGCTGATCCCCAGCTTGTGCATTATGCCTCTTCAATCGGCTTAGCT
64 AGCACGTAGA-GGGGATCAGGCTGATCCCGA-CTTATGCATTATGCCTCTCCAGTCGGCTAAGCA
* * *
31545391 CCCGTACGCTCGTTTCGTGGGTTGACTTAT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
31545421 GCATACGGAGTTCATTCCTAGTGTAAGATCAGACCAGA-CTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGATC-GAGGGTTGCGGTAGCAGGATCGGT
* * * * * *
31545485 AACACGTAGAGGGGACCAGGCTGATCTCCGACTTATGCATTTTGCCTCTCCTGCCGGCTGAGCAC
64 AGCACGTAGAGGGGATCAGGCTGATC-CCGACTTATGCATTATGCCTCTCCAGTCGGCTAAGCAC
* *
31545550 CCACACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
31545579 GCATACAGAGTTCCTTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
31545606 CATATGGAGT
Statistics
Matches: 267, Mismatches: 68, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 143 0.54
159 119 0.45
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGTAG
CACGTAGAGGGGATCAGGCTGATCCCGACTTATGCATTATGCCTCTCCAGTCGGCTAAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31547547 original size:25 final size:26
Alignment explanation
Indices: 31547496--31547547 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31547486 GTTGACTTAG
31547496 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31547522 GCATACGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31547547 G
1 G
31547548 ATCGAATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31547810 original size:159 final size:158
Alignment explanation
Indices: 31547522--31548023 Score: 526
Period size: 159 Copynumber: 3.2 Consensus size: 158
31547512 CCCAGTCTAA
** * *** * * * *
31547522 GCATACGGAGTTCATT-CCAGTCTAAGATCGAATTAGACCGAGGGTTACGGTAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCA
* * * *
31547586 GCACGCAGGGGGGACCAGGCCGATCCCTGACTTGCGCATTCTGTCTCTCCGACCGACTGAGCGCC
66 GCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
* *
31547651 CGCACACCCGTTTCATGGGTTGGCTTAG
131 CGCACACTCGTTTCGTGGGTTGGCTTAG
* * * * *
31547679 GCATAGGGAGTTCATT-CCATGTCTAAGCCC-GAGCCGGACCGAGGGTTGTGGGAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCCGGA-CCGGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * ** * * *
31547742 TAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAAC
64 CAGCACACAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * * * * *
31547807 GCCCACACGCTTGTTTTGTGGGTTGACTTTTG
128 GCCCGCACACTCGTTTCGTGGGTTGGC-TTAG
* *** *
31547839 G-ATACAGAGTTCATTCCCAGTCTAAGGTTGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCA
* *
31547903 GCACACAGGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACCGACTGAGCGC
66 GCACACA-GGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
* *
31547968 CCGCACTCTCATTTCGTGGGTTGGCTTAG
130 CCGCACACTCGTTTCGTGGGTTGGCTTAG
31547997 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
31548024 ATTTTGAGCC
Statistics
Matches: 275, Mismatches: 62, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 19 0.07
158 42 0.15
159 204 0.74
160 10 0.04
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCCCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCA
GCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
CGCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:31548725 original size:26 final size:26
Alignment explanation
Indices: 31548687--31548738 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31548677 GTTGACTTAG
31548687 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
31548713 GCATAC-GATGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
31548739 TATCAGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 18 0.75
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31549075 original size:159 final size:158
Alignment explanation
Indices: 31548837--31549205 Score: 348
Period size: 158 Copynumber: 2.3 Consensus size: 158
31548827 CGGTAGGCTG
** * * *
31548837 AGCGCCCACACGC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CC-ATGTCTAAGC
1 AGCGCCCACACGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT-T-TAAGA
* ** * * * * * * * **
31548899 CCCAACCGGACTGAGGGTTGTGGCAACGGGACCGGTAACACGCAGAGGGGGATCGGGCTGATCCC
63 TCGGACTGAACCGAGGGTTGTGGCAACAGGACCGATAACACGCAG-GGGGGACCGAGCCAATCCC
* * * * ***
31548964 CGGTTTGTGTATTATGCCTATCCGGTTAGCTC
127 CGGCTTGCGCATTATACCTATCCGACCAGCTC
*
31548996 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGATCG
1 AGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGATCG
* * * * * *
31549061 GACTGAACCGAGGGTTGTGGCAGCAGGATCGATAGCATGCAGGGGGTACCGAGCCAATCCTCGGC
66 GACTGAACCGAGGGTTGTGGCAACAGGACCGATAACACGCAGGGGGGACCGAGCCAATCCCCGGC
* * * *
31549126 TTGCGCATTCTACCTCTCCGACCGGCTG
131 TTGCGCATTATACCTATCCGACCAGCTC
* *
31549154 AGCGCTCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 AGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
31549206 ATGTCTAAGC
Statistics
Matches: 169, Mismatches: 38, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
158 83 0.49
159 80 0.47
160 4 0.02
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGATCG
GACTGAACCGAGGGTTGTGGCAACAGGACCGATAACACGCAGGGGGGACCGAGCCAATCCCCGGC
TTGCGCATTATACCTATCCGACCAGCTC
Found at i:31549238 original size:26 final size:26
Alignment explanation
Indices: 31549188--31549240 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31549178 GTTGGCTTAG
*
31549188 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
31549214 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
31549240 G
1 G
31549241 ATTAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:31550100 original size:26 final size:26
Alignment explanation
Indices: 31550070--31550122 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
31550060 GTTGGCTTAG
31550070 GCATACGA-AGTTCATT-CCATGTCTAA
1 GCATA-GAGAGTTCATTCCCA-GTCTAA
*
31550096 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
31550122 G
1 G
31550123 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:31551555 original size:26 final size:26
Alignment explanation
Indices: 31551524--31551574 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
31551514 GTTGGCTTAG
31551524 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
31551550 GCATACGGAGTTCATTCCCTGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
31551575 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:31551928 original size:26 final size:26
Alignment explanation
Indices: 31551892--31551942 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31551882 GTTGACTTCG
*
31551892 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31551918 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
31551943 TATCGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31552217 original size:158 final size:157
Alignment explanation
Indices: 31551918--31552580 Score: 523
Period size: 159 Copynumber: 4.2 Consensus size: 157
31551908 CCCAGTCTAA
* * * * * * * * **
31551918 GCATACGGAGTTCATTCCCAGTCT-ATATCGGATCGGATCGAGGGTTACGGCAGTAGGATTGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCAGGATCGACA
* * * * * * *
31551982 GCATGCAGGGGGAACCGGGTCGATCCCCGGCCTGCGTATTATGCCTCTCCGGCTGGCTCAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGG-TTAGCGCC
** *
31552047 CGCACT-CTCATTTTTTGGGTTGACTTGG
130 CGCA-TGCTCATTTCGTGGGTTGACTTAG
* * *
31552075 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGCTACGATAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCAGGATCGACA
** * * * * *
31552140 GCACGCAGGGGGGATTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGGTTAAGCGCT
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGTT-AGCGCC
* *
31552205 CGCATGCCCATTTCGTGGGTTGGCTTAG
130 CGCATGCTCATTTCGTGGGTTGACTTAG
**** * * ** * * *
31552233 GCATA-GAGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACTGAGGGTTGTGGCAG-TGAGACC
1 GCATACGA-AGTTCATTCCCA-GTCTAAGATTGGA-CCGGACCGAGGGTTACGACAGCAG-GATC
* ** * *
31552294 GACAGCACGCAGAGGGGGATCGGGTCGATCCTTGACTTACGCATTATGCCTCTTCGGCCGGCTTA
62 GACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGG-TTA
**
31552359 GCGCCCATATGCTCATTTCGTGGGTTGACTTATG
125 GCGCCCGCATGCTCATTTCGTGGGTTGACTTA-G
* * * * *
31552393 G-ATAC-AGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCAACAGAAGGATCGAT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCAGGATCGAC
* * * * * * * *
31552456 AGCACACAGGGGGGGACCAGGTTGATCCCCGGCTTACGTATTCTACCTCTTCGACCGGTTGAGCG
65 AGCACGCA-GGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGTT-AGCG
* * * * * *
31552521 CCTGCACGATCGTTTCGTTGGTTGGCTTAG
128 CCCGCATGCTCATTTCGTGGGTTGACTTAG
*
31552551 GCATACGGAGTTCATTCCCAGTCTAAGATT
1 GCATACGAAGTTCATTCCCAGTCTAAGATT
31552581 TTGAGCCATA
Statistics
Matches: 399, Mismatches: 89, Indels: 34
0.76 0.17 0.07
Matches are distributed among these distances:
157 32 0.08
158 152 0.38
159 205 0.51
160 10 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGTTAGCGCCC
GCATGCTCATTTCGTGGGTTGACTTAG
Found at i:31553618 original size:26 final size:25
Alignment explanation
Indices: 31553588--31553639 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
31553578 GTTGGCTTAG
31553588 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCA-GTCTAA
31553614 GCATATGGAGTTCATTCCAGTCTAA
1 GCATATGGAGTTCATTCCAGTCTAA
31553639 G
1 G
31553640 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
GCATATGGAGTTCATTCCAGTCTAA
Found at i:31554356 original size:26 final size:26
Alignment explanation
Indices: 31554320--31554372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31554310 GTTAACTTAG
31554320 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31554346 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31554372 G
1 G
31554373 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31554982 original size:185 final size:184
Alignment explanation
Indices: 31554670--31555218 Score: 541
Period size: 185 Copynumber: 3.0 Consensus size: 184
31554660 TAGGCATATA
* * ** * ** * * * *
31554670 GAGTTCATTACCAGTCTAAGATCAAGCCAGACCAAGGGTTGCAACAGCAAGATTGATAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCAAATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCA
* ** * ** * *
31554735 TGGGGGGACCGGGTTGGTCCCTAACTTGTGCATTCTACCTCTCCTA-CCGATTGAGCACCCGCAC
66 -GGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCC-AGCCGACTGAGCACCCGCAC
* * * * *
31554799 ACTTGTTTCATTGGTTGGCTTAGGCGTACGAAGTTCATTCCATGTCTAAGCATATG
129 GCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* * * * *
31554855 GAGTTCATTCTCAGTCTAAGATCAAATCGGACCG-GAGGTTGCTGCAGCAGGATCGACAGCACGT
1 GAGTTCATTCCCAATCTAAGATCAAATCAGACCGAG-GGTTGCGGCAACAGGATCGACAGCACG-
* * * * * * *
31554919 CGGGGGGGACCGAGCCGGTCCTCGACTTATGCATTCTACCTCTTCGGCCGGCTGAGCACCCGCAT
64 CAGGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCAGCCGACTGAGCACCCGCAC
* * *
31554984 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACG
129 GCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACG
** *
31555040 GAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCATGCA
1 GAGTTCATTCCCAATCTAAGATCAAATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCA
* * * * * *
31555105 GGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCGACTAAGCACCAGCACGC
66 GGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCAGCCGACTGAGCACCCGCACGC
* * *
31555170 CCG-TTC-TGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGC
131 TCGTTTCAT-T-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31555219 CCCAACCGGA
Statistics
Matches: 297, Mismatches: 59, Indels: 17
0.80 0.16 0.05
Matches are distributed among these distances:
182 1 0.00
183 6 0.02
184 88 0.30
185 197 0.66
186 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
GAGTTCATTCCCAATCTAAGATCAAATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCA
GGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCAGCCGACTGAGCACCCGCACGC
TCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
Found at i:31555037 original size:26 final size:26
Alignment explanation
Indices: 31555007--31555059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31554997 GTTGACTTAG
*
31555007 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
31555033 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31555059 G
1 G
31555060 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31561598 original size:26 final size:26
Alignment explanation
Indices: 31561561--31561613 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31561551 GTTGACTTAG
31561561 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31561587 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
31561613 G
1 G
31561614 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31561972 original size:159 final size:157
Alignment explanation
Indices: 31561587--31562089 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 157
31561577 CCCAGTCTAA
* * * *
31561587 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCAAGATCGAC
* ** * * *
31561651 AGCACGTAGGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGTCTCTCCGAACGA-TCGAGCG
64 AGCACGTAGGGGGGGCCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGAACGACTC-AGCG
* *
31561715 CCGGCAC-ATATGTTTCATGGGTTGGCTCAG
128 CCGGCACGCT-TGTTTCATGGGTTGGCTTAG
* ** * * * * * * * *
31561745 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGAC-CACAGTTTGTGGCAGCGAGACCGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACTGA-GGGTTGCGGTAGCAAGATCGA
* **
31561808 CAGCACGTAGAGGGGGGCCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGC
63 CAGCACGTAG-GGGGGGCCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGAACGACTCAGC
* * *
31561873 GCCCGCACGCTTGTTTCATGAGTTGACTTAG
127 GCCGGCACGCTTGTTTCATGGGTTGGCTTAG
* * *
31561904 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAAGATCGACA
* * * * * * ** * *
31561969 GCACGCAGGGGGGGATCGGG-TCGATCCCTGGCTTGCGCTTTTTGCCTCTTCGATTGGCTGAGCG
65 GCACGTAGGGGGGG-CCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCGAACGACTCAGCG
* *
31562033 TCGGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGGCACGCTTGTTTCATGGGTTGGCTTAG
*
31562063 GCATACGGAGTTCATTGCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
31562090 CATACGGAGT
Statistics
Matches: 271, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 59 0.22
159 203 0.75
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAAGATCGACAG
CACGTAGGGGGGGCCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGAACGACTCAGCGCCG
GCACGCTTGTTTCATGGGTTGGCTTAG
Found at i:31562113 original size:26 final size:26
Alignment explanation
Indices: 31562063--31562115 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31562053 GTTGGCTTAG
* *
31562063 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
31562089 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
31562115 G
1 G
31562116 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:31562439 original size:26 final size:26
Alignment explanation
Indices: 31562409--31562461 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31562399 GTTGACTTAG
31562409 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * * *
31562435 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
31562461 G
1 G
31562462 ATTGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31563189 original size:26 final size:26
Alignment explanation
Indices: 31563159--31563211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31563149 GTTGGCTTAG
31563159 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
*
31563185 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
31563211 G
1 G
31563212 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:31563921 original size:26 final size:26
Alignment explanation
Indices: 31563885--31563937 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31563875 GTTGACTTAG
*
31563885 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31563911 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31563937 G
1 G
31563938 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31564416 original size:26 final size:26
Alignment explanation
Indices: 31564387--31564439 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31564377 GTTGGCTTAG
31564387 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
31564413 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
31564439 G
1 G
31564440 ATCAAACCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:31564792 original size:26 final size:26
Alignment explanation
Indices: 31564756--31564808 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31564746 GTTGACTTAG
31564756 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31564782 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31564808 G
1 G
31564809 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31572241 original size:159 final size:159
Alignment explanation
Indices: 31572077--31572435 Score: 388
Period size: 159 Copynumber: 2.3 Consensus size: 159
31572067 GCCCGTTTCA
* * * *
31572077 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGCGG
** * * * * * *
31572141 CAGCGGGA-CTGGCAGCACGCA-GAGGGGGACCGGGCCGATCCTCGGCTTGCGCGT-TATGCCTC
66 CAGCAAGATC-GACAGAACACAGGA-GGGGACCGGACCGATCCTCGGCTTACGCATCTA--CCTC
* * * * *
31572203 TCCGACCGGCTCAATGCTCGTACGCTCATTGCG
127 TCCAACCGACTCAACGCCCGCACGCTCATTGCG
* * *
31572236 TGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCGGACCGGACCAAGGGTTGCG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCAAGGGTTGCG
*
31572299 GCAGCAAGATCGACAGAACACAGGAGGGGACCGGATCGATCCTCGGCTTACGCATCTACCTCTCC
65 GCAGCAAGATCGACAGAACACAGGAGGGGACCGGACCGATCCTCGGCTTACGCATCTACCTCTCC
* * * ** *
31572364 AACCGACTGAGCGCCCGCACGTTTGTTTCG
130 AACCGACTCAACGCCCGCACGCTCATTGCG
31572394 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
31572436 TACGGAGTTT
Statistics
Matches: 165, Mismatches: 28, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
158 66 0.40
159 94 0.57
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGCGG
CAGCAAGATCGACAGAACACAGGAGGGGACCGGACCGATCCTCGGCTTACGCATCTACCTCTCCA
ACCGACTCAACGCCCGCACGCTCATTGCG
Found at i:31572457 original size:26 final size:26
Alignment explanation
Indices: 31572407--31572459 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31572397 GTTGGCTTAG
*
31572407 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
31572433 GCATACGGAGTTTATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
31572459 G
1 G
31572460 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:31572797 original size:26 final size:26
Alignment explanation
Indices: 31572761--31572813 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31572751 GTTGACTTAG
31572761 GCATACGAAGTTCATACCCAATCTAA
1 GCATACGAAGTTCATACCCAATCTAA
* *
31572787 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAATCTAA
31572813 G
1 G
31572814 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAATCTAA
Found at i:31573783 original size:159 final size:158
Alignment explanation
Indices: 31573518--31573986 Score: 491
Period size: 159 Copynumber: 2.9 Consensus size: 158
31573508 GATTGGACAG
* * * * *
31573518 GACCAAGGGTTGCGATAGCAGGATCGACAACACACAG-GGGGGACCGGGCCGATCCCCGGCTTGC
1 GACCAAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGC
* * *
31573582 GCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTCTGGCCGGCTGAGCGCCCATA--CTCGTTTCGTGGGTTGGCTTAGGCATACG
* **
31573647 GAGTTCATTCCATGTCTAAGCCCCAGCCT-
129 GAGTTCATTCCATGTCTAAGCACCAAACTA
** * * * * **
31573676 GACCAAGGGTTGTGGCAGCGGGATCGAA-AGCATGCAGAGGGGGACCGGGTCGATCCCCATCTTG
1 GACCAAGGGTTACGACAGCAGGATC-AACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTG
* * * * *
31573740 CGCATTTTGCCTCT-TCGGCCGGCTCAGCACCAACATACTCGTTTCGTGGGTTGACTTATGCATA
65 CGCATTCTGCCTCTCT-GGCCGGCTGAGCGCC--CATACTCGTTTCGTGGGTTGGCTTAGGCATA
*
31573804 CGGAGTTCATTCCCA-GTCTAAG-ATCAAACTA
127 CGGAGTTCATT-CCATGTCTAAGCACCAAACTA
* * * * * *
31573835 GACTAAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGAACCAGGCCCATTCTCGGCTTGC
1 GACCAAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGC
** * *
31573900 GCATTCTGCCTCTCTAACCGGCTGAGCGCCCGCACACTCGTTTCGTAGGTTGGCTTAGGCATACG
66 GCATTCTGCCTCTCTGGCCGGCTGAGCG-CC-CATACTCGTTTCGTGGGTTGGCTTAGGCATACG
*
31573965 GAGTTCATTGCATGTCTAAGCA
129 GAGTTCATTCCATGTCTAAGCA
31573987 TATGGAGTTC
Statistics
Matches: 251, Mismatches: 48, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
158 36 0.14
159 205 0.82
160 7 0.03
161 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
GACCAAGGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGC
GCATTCTGCCTCTCTGGCCGGCTGAGCGCCCATACTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAAACTA
Found at i:31573994 original size:26 final size:26
Alignment explanation
Indices: 31573958--31574008 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31573948 GTTGGCTTAG
31573958 GCATACGGAGTTCATT-GCATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
*
31573984 GCATATGGAGTTCATTCGCAGTCTA
1 GCATACGGAGTTCATTCGCAGTCTA
31574009 TGATTTTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:31574714 original size:26 final size:26
Alignment explanation
Indices: 31574678--31574730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31574668 GTTGACTTAG
31574678 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
31574704 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
31574730 G
1 G
31574731 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:31576119 original size:26 final size:26
Alignment explanation
Indices: 31576083--31576133 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31576073 TTGACTTAGG
31576083 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
* *
31576109 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
31576134 GATCAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:31576576 original size:158 final size:157
Alignment explanation
Indices: 31576109--31576925 Score: 664
Period size: 158 Copynumber: 5.2 Consensus size: 157
31576099 CCAGTCTAAA
* * *
31576109 CATACGGAGTTCATTCCCA-GTCTAAGAT-CAGACTGGACTGAGGGTTGCAGCAGCAGGATCGGC
1 CATACGGAGTTCATT-CCATGTCTAAGATCCA-ACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * ** * *
31576172 AGTACGCAAGGGGGACCAGGTCAATCCCTGGCTTGCGCATTCTGTCTCTCCGACCGACTTAGCAC
64 AGCACGCAGGGGGGACC-GGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCAC
31576237 CCGCACGGC-CGTTTCGTGGGTTGGCTTAGG
128 CCGCAC-GCTCGTTTCGTGGGTTGGCTTAGG
* ** * * * * *
31576267 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTAGGACCGGCAG
1 CATACGGAGTTCATTCCATGTCTAAGATCCAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
** * * * ** * *
31576332 CAC-CTAGAGGGGGATTGGGCCGATCCTCGACTTACGCATTAAGCTTCTCCGGTCGGCTCAGCGC
66 CACGC-AG-GGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCAC
* * *
31576396 CTGCACGCTCGTTTTGTGGGTTGACTTAGG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * ** * * * *
31576426 CATACGGAGTTCATTCCCA-GTCTAAGGTCGAACCAAACCGAGGGATACGGTAGCAGGATCGGTA
1 CATACGGAGTTCATT-CCATGTCTAAGATCCAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * *
31576490 GCATGCAGGGGGGACCGGGCGAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACC
65 GCACGCAGGGGGGACCGGGCG-ATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCACC
* *
31576555 TGCACGGC-CGTTTCGTGGGTTGGTTTA-G
129 CGCAC-GCTCGTTTCGTGGGTTGGCTTAGG
* * * ** *** * * * *
31576583 CATAGGGAGTTTAGTCCATGTCTAAGCCCCTGTCGAACCTAGGGTTGTGGCAGCGGGA-CAGGCA
1 CATACGGAGTTCATTCCATGTCTAAGATCCAACCGGACCGAGGGTTGCGGCAGCAGGATC-GGCA
* * * *
31576647 GCACACAGAGGGGGACCGTGTCGATCCCCGGCTTGCGCATTATGCCTTTCCGG-CTGGCTCAGCA
65 GCACGCAG-GGGGGACCG-GGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTCAGCA
* *
31576711 CCCGCACGCTCGTTTCATGGGTTGACTTAGG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* ** * * * * *
31576742 CATACGGAGTTCATTCCCA-GTCTAAGATCGAATTGGATCGAGGGTTACGGTAGCAGGATTGACA
1 CATACGGAGTTCATT-CCATGTCTAAGATCCAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * ** * * * * *
31576806 GCACGAAGGGGGGACCGGGTCGGTCCTCGGCTTATGCATTCTGCCTTTTCGATCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCACC
* *
31576871 CGTACGCTCGTTTCATGGGTTGGCTTAGG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGG
31576900 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
31576926 CATACGAAGT
Statistics
Matches: 514, Mismatches: 123, Indels: 44
0.75 0.18 0.06
Matches are distributed among these distances:
156 4 0.01
157 61 0.12
158 276 0.54
159 166 0.32
160 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCATGTCTAAGATCCAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAGG
Found at i:31576734 original size:316 final size:317
Alignment explanation
Indices: 31576109--31576926 Score: 986
Period size: 316 Copynumber: 2.6 Consensus size: 317
31576099 CCAGTCTAAA
* * * *
31576109 CATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGACTGAGGGTTGCAGCAGCAGGATCGGCA
1 CATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACCGAGGGTTACGGTAGCAGGATCGGCA
* * * * * * *
31576173 GTACGCAAGGGGGACCAGGTC-AATCCCTGGCTTGCGCATTCTGTCTCTCCGACCGACTTAGCAC
65 GCACGCAGGGGGGACC-GGGCGAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCAC
31576237 CCGCACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
129 CCGCACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * ** *
31576302 GATCGAGGGTTGTGGCAGTAGGACCGGCAGCACCTAGAGGGGGATTGGGCCGATCCTCGACTTAC
194 AACCGAGGGTTGTGGCAGCAGGACAGGCAGCACCTAGAGGGGGACCGGGCCGATCCCCGACTTAC
* * **
31576367 GCATTAAGCTTCTCCGGTCGGCTCAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTAGG
259 GCATTAAGCTTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
* *** * *
31576426 CATACGGAGTTCATTCCCAGTCTAAGGTCGAACCAAACCGAGGGATACGGTAGCAGGATCGGTAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGTAGCAGGATCGGCAG
* * *
31576491 CATGCAGGGGGGACCGGGCGAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCT
66 CACGCAGGGGGGACCGGGCGAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCC
* * * * *
31576556 GCACGGCCGTTTCGTGGGTTGGTTTA-GCATAGGGAGTTTAGTCCATGTCTAAGCCCCTGTCGAA
131 GCACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* * * * * *
31576620 CCTAGGGTTGTGGCAGCGGGACAGGCAGCACAC-AGAGGGGGACCGTGTCGATCCCCGGCTTGCG
196 CCGAGGGTTGTGGCAGCAGGACAGGCAGCAC-CTAGAGGGGGACCGGGCCGATCCCCGACTTACG
*
31576684 CATTATGCCTT-TCCGG-CTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
260 CATTAAG-CTTCTCCGGTC-GGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * * *
31576742 CATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTACGGTAGCAGGATTGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGTAGCAGGATCGGCAG
* * * ** * * * *
31576807 CACGAAGGGGGGACCGGGTCG-GTCCTCGGCTTATGCATTCTGCCTTTTCGATCGGCTGAGCGCC
66 CACGCAGGGGGGACCGGG-CGAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
* * *
31576871 CGTAC-GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 CGCACGGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
31576927 ATACGAAGTT
Statistics
Matches: 422, Mismatches: 71, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
315 3 0.01
316 258 0.61
317 160 0.38
318 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGTAGCAGGATCGGCAG
CACGCAGGGGGGACCGGGCGAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCC
GCACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
CCGAGGGTTGTGGCAGCAGGACAGGCAGCACCTAGAGGGGGACCGGGCCGATCCCCGACTTACGC
ATTAAGCTTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
Found at i:31576929 original size:26 final size:26
Alignment explanation
Indices: 31576899--31576951 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31576889 GTTGGCTTAG
*
31576899 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31576925 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31576951 G
1 G
31576952 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31577300 original size:159 final size:159
Alignment explanation
Indices: 31576987--31577928 Score: 610
Period size: 159 Copynumber: 5.9 Consensus size: 159
31576977 AGCAGGACCA
* * ** * * *
31576987 GCAGCAGGATCAGCAGCACGCATG-GGGGGACCAAGCCGATCCCTGACTTGCGCATTCTGCCTCT
1 GCAGCAGGATCGGCAACACGCA-GAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * * * * *
31577051 CCGACCGGTTGAGCACCCGCAAG-TCTGTTTCGTGGGTTGGGTTAGGCATAGGGAGTTCAGT-CC
65 CCGACTGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCC
** ***** * * * *
31577114 ATGTCTAAGCCCCTGTTGAACCTAGGGTTGTA
129 A-GTCTAAGATCAAACCGGACCGAGGGTTATG
* * * * * *
31577146 GTAGCGGGA-CAGGCAACACGCAGAGGGGGACCGTGTCGATCCCTGGCTTGCACATTATGCCTCT
1 GCAGCAGGATC-GGCAACACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * *
31577210 CCGACTGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA
65 CCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA
* * *
31577275 GTCTAAGATCAAACCAGACCGAGGGTCACG
130 GTCTAAGATCAAACCGGACCGAGGGTTATG
** * * * * * *
31577305 GCAGCAGGATCGATAGCACACAGA-GGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTT
1 GCAGCAGGATCGGCAACACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
* *** * * *
31577369 CGTCCAACTGAGCGCCCACACACTCGTTTCGTGGGTTGGCTTTGGCATACGAAGTTCATTCCCAG
66 CGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
** * *
31577434 TCTAAGATCGGACCGAACCGAGAGTTACGGTAGCAG
131 TCTAAGATCAAACCGGACCGAGGGTTA---T----G
* * * * * * *
31577470 GACCAGTAGCAGGATCGGTAGCACGCATGA-GGGGATCGAGTCGATCCTCGACTTACGCATTCTG
1 G--C---AGCAGGATCGGCAACACGCA-GAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTG
* * * * *
31577534 CCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTTAT
60 CCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCAT
* * *
31577599 T-CCATGTCTAAG-CCGCAACCGGATCGAGGGTTATG
125 TCCCA-GTCTAAGATC-AAACCGGACCGAGGGTTATG
* * * * * ** * * * * * *
31577634 GCAGCGGGACCGGTAGCACGCAAAAAGGGACTGGGCCGATCCCCGACTTACGGATTATGCCTCTC
1 GCAGCAGGATCGGCAACACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * * * * * * * * *
31577699 TG-GTCGACTCACCCCCCGGACGCTCATTTCGTGGGTTGACTTCGACATACGGAGTTCATTCCCA
66 CGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA
* * *
31577763 GTCTAAGATCAGATCGGACCGAGGGTTGTG
130 GTCTAAGATCAAACCGGACCGAGGGTTATG
* * * * * * *
31577793 ACAGCAGGATCGACAATACACA-AGGGGGGACCAGGTCGGTCCCCAGCTTGCGCATTCTGCCTCT
1 GCAGCAGGATCGGCAACACGCAGA-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT
* * *
31577857 CCGACTGGCTGAGCGCCTGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATT-CCA
65 CCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA
31577921 TGTCTAAG
130 -GTCTAAG
31577929 CATACGGAGT
Statistics
Matches: 598, Mismatches: 158, Indels: 54
0.74 0.20 0.07
Matches are distributed among these distances:
158 114 0.19
159 339 0.57
160 11 0.02
162 1 0.00
164 2 0.00
165 2 0.00
167 1 0.00
168 1 0.00
170 22 0.04
171 105 0.18
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
GCAGCAGGATCGGCAACACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
CGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
TCTAAGATCAAACCGGACCGAGGGTTATG
Found at i:31577932 original size:26 final size:26
Alignment explanation
Indices: 31577902--31577954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31577892 GTTGGCTTAG
31577902 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
31577928 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31577954 G
1 G
31577955 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31578718 original size:343 final size:343
Alignment explanation
Indices: 31578092--31578728 Score: 850
Period size: 343 Copynumber: 1.9 Consensus size: 343
31578082 CGCACTCTTG
* * *
31578092 TTTCATGGGTTGACTTAGGCATATGGAGTGCATCCTTAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCAAACGGAGTGCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
31578157 TCTAAGATCTAACTAGATCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCC
66 TCTAAGATCTAACCAGATCGAGGGTTACGGCAGCAGGATCGACAACACGCAGGAGGGACCGGGCC
* * ** * *
31578222 GATCCCCGACTTGCGCATTTTACATCTTCGGCCGGCTGAGCGCCCACACGCCCGTTTCATAGGTT
131 GATCCCCGACTTGCGCATTCTACATCTCCAACCGACTGAACGCCCACACGCCCGTTTCATAGGTT
* * ** *
31578287 GGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGG
196 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGAGAAGTGGCAGTGGC
31578352 ACCTGCAGCACACAGAAGGGGACC-AGGCCGATCCCCGTCTTACCCATTCTATCTCTCCAGTCGA
261 ACCTGCAGCACACAGAAGGGGACCGA-GCCGATCCCCGTCTTACCCATTCTATCTCTCCAGTCGA
31578416 CTGAGTGCCCGTGCGCTCA
325 CTGAGTGCCCGTGCGCTCA
* * * *
31578435 TTTCGTGGGTTGACTTAGGGAAACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCAAACGGAGTGCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
31578500 TCTAAGATC-AGACCGGA-CTGAGGGTTGCGGCAGCAGGATTGACAACACGCAGGAGGGACCGGG
66 TCTAAGATCTA-ACCAGATC-GAGGGTTACGGCAGCAGGATCGACAACACGCAGGAGGGACCGGG
* * * * * * * * * *
31578563 CTGATCTCTGGCTTGCGCATTCTACGTCTCCAACCGACTGAATGCCCGCACGCTCGTTTCGTGGG
129 CCGATCCCCGACTTGCGCATTCTACATCTCCAACCGACTGAACGCCCACACGCCCGTTTCATAGG
* *
31578628 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTACGCCCCAGTCGGACCGAGAGAAGTGGGAGTG
194 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGAGAAGTGGCAGTG
* *
31578693 GCACC-GACAGCACGCAGAGGGGGACCGAGCCGATCC
259 GCACCTG-CAGCACACAGAAGGGGACCGAGCCGATCC
31578729 TCGGCTTGTG
Statistics
Matches: 250, Mismatches: 40, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
342 3 0.01
343 246 0.98
344 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (343 bp):
TTTCATGGGTTGACTTAGGCAAACGGAGTGCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCTAACCAGATCGAGGGTTACGGCAGCAGGATCGACAACACGCAGGAGGGACCGGGCC
GATCCCCGACTTGCGCATTCTACATCTCCAACCGACTGAACGCCCACACGCCCGTTTCATAGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGAGAAGTGGCAGTGGC
ACCTGCAGCACACAGAAGGGGACCGAGCCGATCCCCGTCTTACCCATTCTATCTCTCCAGTCGAC
TGAGTGCCCGTGCGCTCA
Found at i:31578789 original size:343 final size:343
Alignment explanation
Indices: 31578092--31578810 Score: 818
Period size: 343 Copynumber: 2.1 Consensus size: 343
31578082 CGCACTCTTG
* * *
31578092 TTTCATGGGTTGACTTAGGCATATGGAGTGCATCCTTAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
31578157 TCTAAGATCTAACTAGATCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCC
66 TCTAAGATCTAACCAGATCGAGGGTTACGGCAGCAGGATCGACAACACGCAGGAGGGACCGGGCC
* * ** * *
31578222 GATCCCCGACTTGCGCATTTTACATCTTCGGCCGGCTGAGCGCCCACACGCCCGTTTCATAGGTT
131 GATCCCCGACTTGCGCATTCTACATCTCCAACCGACTGAACGCCCACACGCCCGTTTCATAGGTT
* * ** *
31578287 GGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGG
196 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGAGAAGTGGCAGTGGC
* * *
31578352 ACCTGCAGCACACAGAAGGGGACCAGGCCGATCCCCGTCTTACCCATTCTATCTCTCCAGTCGAC
261 ACCTGCAGCACACAGAAGGGGACCAGGCCGATCCCCGGCTTACCCATTATACCTCTCCAGTCGAC
* * * * * *
31578417 TGAGTGCCCGTGCGCTCA
326 TCAGCGCCCATACCCCCA
* * * *
31578435 TTTCGTGGGTTGACTTAGGGAAACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
31578500 TCTAAGATC-AGACCGGA-CTGAGGGTTGCGGCAGCAGGATTGACAACACGCAGGAGGGACCGGG
66 TCTAAGATCTA-ACCAGATC-GAGGGTTACGGCAGCAGGATCGACAACACGCAGGAGGGACCGGG
* * * * * * * * * *
31578563 CTGATCTCTGGCTTGCGCATTCTACGTCTCCAACCGACTGAATGCCCGCACGCTCGTTTCGTGGG
129 CCGATCCCCGACTTGCGCATTCTACATCTCCAACCGACTGAACGCCCACACGCCCGTTTCATAGG
* *
31578628 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTACGCCCCAGTCGGACCGAGAGAAGTGGGAGTG
194 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGAGAAGTGGCAGTG
* * * *** * * ***
31578693 GCACC-GACAGCACGCAGAGGGGGACC-GAGCCGATCCTCGGCTTGTGCATTATGCCTTTTTGGT
259 GCACCTG-CAGCACACAGAAGGGGACCAG-GCCGATCCCCGGCTTACCCATTATACCTCTCCAGT
31578756 C-AGCTCAGCGCCCATACCCCCA
322 CGA-CTCAGCGCCCATACCCCCA
* *
31578778 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCAT
31578811 TCCATGTCTA
Statistics
Matches: 308, Mismatches: 63, Indels: 10
0.81 0.17 0.03
Matches are distributed among these distances:
342 5 0.02
343 303 0.98
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCTAACCAGATCGAGGGTTACGGCAGCAGGATCGACAACACGCAGGAGGGACCGGGCC
GATCCCCGACTTGCGCATTCTACATCTCCAACCGACTGAACGCCCACACGCCCGTTTCATAGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGAGAAGTGGCAGTGGC
ACCTGCAGCACACAGAAGGGGACCAGGCCGATCCCCGGCTTACCCATTATACCTCTCCAGTCGAC
TCAGCGCCCATACCCCCA
Found at i:31578954 original size:159 final size:158
Alignment explanation
Indices: 31578479--31579139 Score: 523
Period size: 159 Copynumber: 4.2 Consensus size: 158
31578469 CCTAGTCTAA
* ** * * *
31578479 GCATATGGAGTTCATTCCCA-GTCTAA-GATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGGCCCA-ACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *** * **
31578542 CAACACGCAGGAGGGACCGGGCTGATCTCTGGCTTGCGCATTCTACGTCTCCAACCGACTGAATG
64 CAGCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTTCATG
*
31578607 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * ** * * *
31578637 GCATAGGGAGTTCATTCCATGTCTACGCCCCAGTCGGACCGAGAGAAGTGGGAG-TGGCACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGGCCCAACCGGACCGAGGGTTGTGGCAGCAGG-ATCGAC
* * * * ** *
31578701 AGCACGCAGAGGGGGACCGAGCCGAT-CCTCGGCTTGTGCATTATGCCTTTTTGGTCAGC-TCA-
65 AGCACGCAG-GGGGGACCGGGCTGATCCCT-GGCTTGCGCATTATGCCTCTCCGGTCGGCTTCAT
* * * * *
31578763 GCGCCCATACCCCCATTTCATGGGTTGGCTTAG
128 GC-CCGA-ACGCTCGTTTCGTGGGTTGGCTTAG
* * **
31578796 GCATAGGGAGTTCATTCCATGTCTAAGGCCCAACCGGACAGAGGGTTGTGGCAGTGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGGCCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* *
31578861 GCACGTAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGGCTTCATGC
66 GCACGCAG-GGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTTCATGC
* * *
31578926 CCGAATGCTCGTTTCGTGCGTTGACTTAG
130 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* ***** * *
31578955 GCATACGGAGTTCATTCCCA-GTTTAAGATAGGACCAGACCGAGGG-TGATGGCAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGGCCCAACCGGACCGAGGGTTG-TGGCAGCAGGATCGA
* * * * * * * *
31579018 CAGCAAGCAGGGGGGATCGGGTTGGTCCCCGGCTT-CTGCATTCTGCCTCTTCGGTCGG-TTGAG
64 CAGCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGC-GCATTATGCCTCTCCGGTCGGCTTCA-
* *
31579081 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
127 TGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
31579113 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31579140 CATACGAAGT
Statistics
Matches: 390, Mismatches: 97, Indels: 32
0.75 0.19 0.06
Matches are distributed among these distances:
157 14 0.04
158 141 0.36
159 219 0.56
160 14 0.04
161 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGGCCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTTCATGCC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31579142 original size:26 final size:26
Alignment explanation
Indices: 31579113--31579164 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31579103 GTTGGCTTAG
*
31579113 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31579139 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31579165 TATTGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31579861 original size:343 final size:331
Alignment explanation
Indices: 31579312--31579947 Score: 788
Period size: 343 Copynumber: 1.9 Consensus size: 331
31579302 CATTTTGTTG
*
31579312 GTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGAT
1 GTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCACATGGAGTTCATTCCCAATCTAAGAT
* * * * * * * * ** **
31579377 CTAACCGGACCGAGGGTTACGGCAGCATGCTGGGGGGGCCGGGCTGGTCTTCGGCTTTCGCATTC
66 CGAACCAGACCGAGGGTTACGGCAGCACGCAGGAGGGACCGGACCGGTCCCCAACTTTCGCATTC
* *
31579442 TGCCTCTTCGGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTC
131 TGCCTCTTCGGCCGGCTGAGCACCCGCACGCCCAGTTCATGGGTTGGCGTAGGCATAGGGAGTTC
* ** * *
31579507 ATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAACGGGACCGGCAGCACGTAGTGGGG
196 ATTCCATGTCTAACCCCCAACCAAACCAAGGGTTATGGCAACGGGACCGGCAGCACGTAGAGGGG
** *
31579572 GAACGGACCGATCCCCGGTTTACGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCATACGCTCGTT
261 GAACGGACCGATCCCCGACTTACGCATTATGCCTCTCCGGTTGGCTGAGCGCCCATACGCTCGTT
31579637 TCGTGC
326 TCGTGC
* *
31579643 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACATGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCACATGGAGTTCATTCCCAATCTAAGAT
*
31579708 CGAACTAGACCGAGGGTTGCGGTAATAGGATCGGCAGCACGCAGGAGGGACCGGACCGGTCCCCA
66 CGAACCAGACCGA-----G-GGT--T---A-CGGCAGCACGCAGGAGGGACCGGACCGGTCCCCA
* * * * *
31579773 ACTTGT-GCATTTTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGGTTCATGGGTTGGCGTAG
119 ACTT-TCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACGCCCAGTTCATGGGTTGGCGTAG
* * * * **
31579837 GGATAGGGAGTTCATTCCATGTCTAACCCCCAGCCAAACCGAGGGTTATGGTAGTGGGACCGGCA
183 GCATAGGGAGTTCATTCCATGTCTAACCCCCAACCAAACCAAGGGTTATGGCAACGGGACCGGCA
* **
31579902 GCACGTAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCC
248 GCACGTAGAGGGGGAACGGACCGATCCCCGACTTACGCATTATGCC
31579948 CCTTCAACCG
Statistics
Matches: 252, Mismatches: 40, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
331 72 0.29
336 1 0.00
337 3 0.01
339 1 0.00
342 1 0.00
343 173 0.69
344 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (331 bp):
GTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCACATGGAGTTCATTCCCAATCTAAGAT
CGAACCAGACCGAGGGTTACGGCAGCACGCAGGAGGGACCGGACCGGTCCCCAACTTTCGCATTC
TGCCTCTTCGGCCGGCTGAGCACCCGCACGCCCAGTTCATGGGTTGGCGTAGGCATAGGGAGTTC
ATTCCATGTCTAACCCCCAACCAAACCAAGGGTTATGGCAACGGGACCGGCAGCACGTAGAGGGG
GAACGGACCGATCCCCGACTTACGCATTATGCCTCTCCGGTTGGCTGAGCGCCCATACGCTCGTT
TCGTGC
Found at i:31579997 original size:343 final size:331
Alignment explanation
Indices: 31579304--31580023 Score: 778
Period size: 343 Copynumber: 2.1 Consensus size: 331
31579294 CGCACGCTCA
* * *
31579304 TTTTGTTGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAA
1 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACATGGAGTTCATTCCCAA
* * * * * * * * ** **
31579369 TCTAAGATCTAACCGGACCGAGGGTTACGGCAGCATGCTGGGGGGGCCGGGCTGGTCTTCGGCTT
66 TCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACGCAGGAGGGACCGGACCGGTCCCCAACTT
* *
31579434 TCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA
131 TCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACGCCCAGTTCATGGGTTGGCGTAGGCATA
* ** *
31579499 GGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAACGGGACCGGCAGCACG
196 GGGAGTTCATTCCATGTCTAACCCCCAACCAAACCAAGGGTTATGGCAACGGGACCGGCAGCACG
* ** * * **** * *
31579564 TAGTGGGGGAACGGACCGATCCCCGGTTTACGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCATA
261 TAGAGGGGGAACGGACCGATCCCCGACTTACGCATTATGCCCCTCCAACCGGCTCAGCGCCCACA
*
31579629 CGCTCG
326 CGCCCG
* * *
31579635 TTTCGTGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACATGGAGTTCATTCCCAG
1 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACATGGAGTTCATTCCCAA
*
31579700 TCTAAGATCGAACTAGACCGAGGGTTGCGGTAATAGGATCGGCAGCACGCAGGAGGGACCGGACC
66 TCTAAGATCGAACCAGACCGA-----G-GGT--T---A-CGGCAGCACGCAGGAGGGACCGGACC
* * * * *
31579765 GGTCCCCAACTTGT-GCATTTTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGGTTCATGGGT
119 GGTCCCCAACTT-TCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACGCCCAGTTCATGGGT
* * * * **
31579829 TGGCGTAGGGATAGGGAGTTCATTCCATGTCTAACCCCCAGCCAAACCGAGGGTTATGGTAGTGG
183 TGGCGTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAACCAAACCAAGGGTTATGGCAACGG
* ** *
31579894 GACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCCCTTCAACCGG
248 GACCGGCAGCACGTAGAGGGGGAACGGACCGATCCCCGACTTACGCATTATGCCCCTCCAACCGG
* * *
31579959 CTCAGTGCCCGCATGCCCG
313 CTCAGCGCCCACACGCCCG
* * *
31579978 TTTTGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
31580024 CCCAGCCAGA
Statistics
Matches: 315, Mismatches: 60, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
331 77 0.24
336 1 0.00
337 3 0.01
339 1 0.00
342 4 0.01
343 228 0.72
344 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (331 bp):
TTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACATGGAGTTCATTCCCAA
TCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACGCAGGAGGGACCGGACCGGTCCCCAACTT
TCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACGCCCAGTTCATGGGTTGGCGTAGGCATA
GGGAGTTCATTCCATGTCTAACCCCCAACCAAACCAAGGGTTATGGCAACGGGACCGGCAGCACG
TAGAGGGGGAACGGACCGATCCCCGACTTACGCATTATGCCCCTCCAACCGGCTCAGCGCCCACA
CGCCCG
Found at i:31580285 original size:317 final size:317
Alignment explanation
Indices: 31579714--31580337 Score: 788
Period size: 317 Copynumber: 2.0 Consensus size: 317
31579704 AGATCGAACT
* *
31579714 AGACCGAGGGTTGCGGTAATAGGATCGGCAGCACGCAGGAGGGACCGGACCGGTCCCCAACTTGT
1 AGACCGAGGGTTGCGGTAATAGGATCGGCAGCACGCAGGAGGGACCGGACCGATCCCCAACTTGC
* * * * ** *
31579779 GCATTTTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGGTTCATGGGTTGGCGTAGGGATAGG
66 GCATTTTGCCTATTCGGCCGGCTCAGCGCCCGCACGCTCGGTTCATGGGTTGACGTAGACATACG
* * * **
31579844 GAGTTCATTCCATGTCTAACCCCCAGCCAAACCGAGGGTTATGGTAGTGGGACCGGCAGCACGTA
131 GAGTTAATTCCATGTCTAACCACCAGCCAAACCGAGGGTTATGGTAGTAGGACCAACAGCACGTA
* * * *
31579909 GAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCCCTTCAACCGGCTCAGTGCCCGCATG
196 GAGGGGGACCGGGTCAATCCCCGACTTACGCATTATGCCCCTCCAACCAGCTCAGTGCCCGCAGG
* *
31579974 CCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
261 CCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
31580031 AGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGCATAGG-GGGACCGGGCCGATCCCCAGCTT
1 AGACCGAGGGTTGCGGTAATAGGATCGGCAGCACGC--AGGAGGGACCGGACCGATCCCCAACTT
** * * * *
31580095 GCGCATTTTGCCTATTCGGCCGGCTCAGCTTCCGCACTCTCGTTTCATGGGTTGACTTATACATA
64 GCGCATTTTGCCTATTCGGCCGGCTCAGCGCCCGCACGCTCGGTTCATGGGTTGACGTAGACATA
* * * * * *
31580160 CGGAGTTAATTCCCA-GTCTAA-GATCAGACCGAACTGAGGGTTGTGGTAGTAGGATCAACAGCA
129 CGGAGTTAATT-CCATGTCTAACCACCAG-CCAAACCGAGGGTTATGGTAGTAGGACCAACAGCA
* * * ** * *
31580223 CGTAG-GGGGGACCGGGTCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGTGCCCG
192 CGTAGAGGGGGACCGGGTCAATCCCCGACTTACGCATTATGCCCCTCCAACCAGCTCAGTGCCCG
*
31580287 CAGGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
257 CAGGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
31580338 GGCATACGGA
Statistics
Matches: 259, Mismatches: 44, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
317 133 0.51
318 120 0.46
319 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
AGACCGAGGGTTGCGGTAATAGGATCGGCAGCACGCAGGAGGGACCGGACCGATCCCCAACTTGC
GCATTTTGCCTATTCGGCCGGCTCAGCGCCCGCACGCTCGGTTCATGGGTTGACGTAGACATACG
GAGTTAATTCCATGTCTAACCACCAGCCAAACCGAGGGTTATGGTAGTAGGACCAACAGCACGTA
GAGGGGGACCGGGTCAATCCCCGACTTACGCATTATGCCCCTCCAACCAGCTCAGTGCCCGCAGG
CCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
Found at i:31580304 original size:158 final size:158
Alignment explanation
Indices: 31579685--31580337 Score: 649
Period size: 159 Copynumber: 4.1 Consensus size: 158
31579675 CTAAGCACAT
* * * * *
31579685 GGAGTTCATTCCCA-GTCTAAGATCGAACTAGACCGAGGGTTGCGGTAATAGGATCGGCAGCACG
1 GGAGTTCATTCCCATGTCTAAGA-CCAGCCAGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACG
* * * * * * * * *
31579749 CAGGAGGGACCGGACCGGTCCCCAACTTGTGCATTTTGCCTCTTCGGTCGGCTGAGCGCCCGCAC
65 TAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTTCGGCCGGCTCAGTGCCCGCAC
* * * *
31579814 GCTCGGTTCATGGGTTGGCGTAGGGATAG
130 GCTCGTTTCATGGGTTGGCTTAGGCATAC
** * * * *
31579843 GGAGTTCATT-CCATGTCTAACCCCCAGCCAAACCGAGGGTTATGGTAGTGGGACCGGCAGCACG
1 GGAGTTCATTCCCATGTCTAA-GACCAGCCAGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACG
* * * * **
31579907 TAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCCCTTCAACCGGCTCAGTGCCCGCA
65 TAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTTCGGCCGGCTCAGTGCCCGCA
* * ** *
31579972 TGCCCGTTTTGTGGGTTGGCTTAGGCATAG
129 CGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
31580002 GGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACG
1 GGAGTTCATTCCCATGTCTAAG-ACCAGCCAGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACG
* *
31580066 CATA-GGGGGACCGGGCCGATCCCC-AGCTTGCGCATTTTGCCTATTCGGCCGGCTCAGCT-TCC
65 --TAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTTTGCCTCTTCGGCCGGCTCAG-TGCCC
* * **
31580128 GCACTCTCGTTTCATGGGTTGACTTATACATAC
126 GCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * **
31580161 GGAGTTAATTCCCA-GTCTAAGATCAGACC-GAACTGAGGGTTGTGGTAGTAGGATCAACAGCAC
1 GGAGTTCATTCCCATGTCTAAGACCAG-CCAG-ACCGAGGGTTGTGGTAGTAGGATCGGCAGCAC
* * * * * * *
31580224 GTAGGGGGGACCGGGTCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGTGCCCGCA
64 GTAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTTCGGCCGGCTCAGTGCCCGCA
* *
31580289 GGCTCGTTTCGTGGGTTGGCTTAGGCATAC
129 CGCTCGTTTCATGGGTTGGCTTAGGCATAC
31580319 GGAGTTCATT-CCATGTCTA
1 GGAGTTCATTCCCATGTCTA
31580338 GGCATACGGA
Statistics
Matches: 403, Mismatches: 77, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
157 9 0.02
158 141 0.35
159 247 0.61
160 4 0.01
161 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCCATGTCTAAGACCAGCCAGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGT
AGGGGGGACCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTTCGGCCGGCTCAGTGCCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATAC
Found at i:31581088 original size:26 final size:26
Alignment explanation
Indices: 31581043--31581095 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31581033 GTTGACTTAG
** *
31581043 GCATACAGAGTTTGTCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
31581069 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
31581095 G
1 G
31581096 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:31581453 original size:159 final size:157
Alignment explanation
Indices: 31581196--31581607 Score: 447
Period size: 157 Copynumber: 2.6 Consensus size: 157
31581186 TCGGCTGAGT
* * * * * * * *
31581196 GCCCGCACACCCATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCAATCTATGTCTAAGCCCTAGC
1 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGA
* * * **
31581261 TGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGGATCGGGTCAATCCCCGGTTT
66 TGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTAG-GGGGGACCGGGCCAAT-CCCGACTT
* *
31581326 GCTCATTATGTCTCCCCGATCGACTCAGC
129 GCACATTATGCCTCCCCGATCGACTCAGC
* * * * *
31581355 GCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AG
1 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCTAG
*
31581418 ATCGGACCGAGGG-T-T-GCAGTAGCAGATTCGACAGCACGTAGGGGGGACCGGGCCGATCCCGA
65 AT-GGACCGAGGGTTGTGGCAGTAG--GA-TCGACAGCACGTAGGGGGGACCGGGCCAATCCCGA
* * * * *
31581480 CTTGCACATTCTGCCTCTCTGGTCGACTGAGC
126 CTTGCACATTATGCCTCCCCGATCGACTCAGC
* * * *
31581512 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGA
*
31581577 TGGACCGAGGGTTGTGGCAGTAGGACCGACA
66 TGGACCGAGGGTTGTGGCAGTAGGATCGACA
31581608 ACAGGATCGG
Statistics
Matches: 208, Mismatches: 35, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
156 10 0.05
157 94 0.45
158 25 0.12
159 70 0.34
160 9 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGA
TGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTAGGGGGGACCGGGCCAATCCCGACTTGC
ACATTATGCCTCCCCGATCGACTCAGC
Found at i:31581607 original size:157 final size:157
Alignment explanation
Indices: 31581135--31581607 Score: 515
Period size: 159 Copynumber: 3.0 Consensus size: 157
31581125 GGATCAGTAA
* * * * * * *
31581135 CACGTAGGGGGGACCAGGTCGATCATCGACTTGCGCATTCTGCCTTTTTGGTCGGCTGAGTGCCC
1 CACGTAGGGGGGACCGGGTCGATC-CCGACTTGCACATTCTGCCTCTCTGGTCGACTGAGCGCCC
* * * * * * *
31581200 GCACACCCATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCAATCTATGTCTAAGCCCTAGCTGGA
65 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
*
31581265 CCGAGGGTTGTGGCAGTAGGATCGGCAG
130 CCGAGGGTTGTGGCAGTAGGATCGACAG
* * ** * * * * * * * *
31581293 CACGTAGAGGGGGATCGGGTCAATCCCCGGTTTGCTCATTATGTCTCCCCGATCGACTCAGCGCT
1 CACGTAG-GGGGGACCGGGTCGAT-CCCGACTTGCACATTCTGCCTCTCTGGTCGACTGAGCGCC
* * * ** *
31581358 CGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATC
64 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCT-
31581421 GGACCGAGGG-T-T-GCAGTAGCAGATTCGACAG
127 GGACCGAGGGTTGTGGCAGTAG--GA-TCGACAG
*
31581452 CACGTAGGGGGGACCGGGCCGATCCCGACTTGCACATTCTGCCTCTCTGGTCGACTGAGCGCCCG
1 CACGTAGGGGGGACCGGGTCGATCCCGACTTGCACATTCTGCCTCTCTGGTCGACTGAGCGCCCG
*
31581517 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
66 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
*
31581582 CGAGGGTTGTGGCAGTAGGACCGACA
131 CGAGGGTTGTGGCAGTAGGATCGACA
31581608 ACAGGATCGG
Statistics
Matches: 250, Mismatches: 53, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
156 10 0.04
157 93 0.37
158 33 0.13
159 104 0.42
160 10 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CACGTAGGGGGGACCGGGTCGATCCCGACTTGCACATTCTGCCTCTCTGGTCGACTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
CGAGGGTTGTGGCAGTAGGATCGACAG
Found at i:31582231 original size:157 final size:156
Alignment explanation
Indices: 31581808--31582254 Score: 470
Period size: 159 Copynumber: 2.8 Consensus size: 156
31581798 TTACGGCAGC
* * * * *
31581808 AGGATCGGCAGCACGCAGGGGGGATTGGGCCGATCTCTGGCTTGCGCATTCTACCTCTCCGCTCG
1 AGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCG
** *
31581873 GTTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
31581938 CCTCAGTCAGACCAAGGGTTGTGGCA
131 CCTCAGCCAAAACAAGGGTTGTGGCA
* * * *
31581964 ACGG-TACTGGCAGCACGCAAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCG
1 A-GGAT-C-GGCAGCACGC-AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCG
* * * * * * *
31582028 GTCGGCTCAGCGCCCGTAGGCTTGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCCA-GT
62 ATCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
* * ** **
31582092 CTAAG-ATCTGACCAAAACGGGGGTTGTGGTGGT
126 CTAAGCCTCAG-CCAAAACAAGGGTTGT-G-GCA
* * * *
31582125 AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGG-TTGCGCATTGTACCTCTCCGATCG
1 AGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCG
* * * *
31582189 GTTGAGCACCCGTACACTCGTTTCTTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
31582254 C
131 C
31582255 ATACGGAGTT
Statistics
Matches: 234, Mismatches: 46, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
156 5 0.02
157 73 0.31
158 34 0.15
159 112 0.48
160 7 0.03
161 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (156 bp):
AGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCG
GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCTCAGCCAAAACAAGGGTTGTGGCA
Found at i:31582263 original size:26 final size:26
Alignment explanation
Indices: 31582227--31582279 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31582217 GTTGGCTTAG
31582227 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31582253 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31582279 G
1 G
31582280 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31583006 original size:26 final size:26
Alignment explanation
Indices: 31582960--31583012 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31582950 GTTGACTTAG
*
31582960 GCATACGAAGTTCATCCCCAGTATAA
1 GCATACGAAGTTCATCACCAGTATAA
* *
31582986 GCATACGGAGTTCA-CTACCAGTCTAA
1 GCATACGAAGTTCATC-ACCAGTATAA
31583012 G
1 G
31583013 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCACCAGTATAA
Found at i:31583832 original size:158 final size:157
Alignment explanation
Indices: 31583369--31583855 Score: 498
Period size: 159 Copynumber: 3.1 Consensus size: 157
31583359 GTCTAAGCAC
* * ** *
31583369 ACGGAGTTCATTCCTAGTCTAAGATTGGA-CTGGACTGAGGGTTGCGGTAGTAGGATCGACAGCA
1 ACGGAGTTCATTCCCAGTCTAACATCAGATC-GGACTGAGGGTTGCGGCAGTAGGATCGACAGCA
* * * * *
31583433 CGCA-GGGGGACCGGGTTGATCCCTGACTTACGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGC
65 CGCAGGGGGGATCGGGTCGATCCCAG-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGC
* *
31583497 ACGCCCGTTTCATGGGTTGGCTTAGGCAT
129 ACACTCGTTTCATGGGTTGGCTTAGGCAT
* * ** * * * * *
31583526 AGGGAGTTCATT-CCATGTTTAAGCCCCAG-TCGGACTAAGGGTTGTGGCAATGGGA-CTGGCAG
1 ACGGAGTTCATTCCCA-GTCTAA-CATCAGATCGGACTGAGGGTTGCGGCAGTAGGATC-GACAG
* * * * *
31583588 CACGCAGAGGGGGATCGGGCCGATACCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCC
63 CACGCAG-GGGGGATCGGGTCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * * * *
31583653 CGCATACTTGTTTCGTTGGTTGCCTTAGGCAT
126 CGCACACTCGTTTCATGGGTTGGCTTAGGCAT
* * * *
31583685 ATGGAGTTCATTCCCAGTCTAACATCAGATCGGACCGAGGTTTGCGGCAGTAGGATCGACAGCAT
1 ACGGAGTTCATTCCCAGTCTAACATCAGATCGGACTGAGGGTTGCGGCAGTAGGATCGACAGCAC
* ** * * *
31583750 GCAGGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGACTGAACGCCCGTA
66 GCAGGGGGGATCGGGTCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA
31583815 CACTCGTTTCATGGGTTGGCTTAGGCAT
130 CACTCGTTTCATGGGTTGGCTTAGGCAT
31583843 ACGGAGTTCATTC
1 ACGGAGTTCATTC
31583856 AATGTCTAAG
Statistics
Matches: 260, Mismatches: 60, Indels: 19
0.77 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 45 0.17
158 90 0.35
159 114 0.44
160 8 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
ACGGAGTTCATTCCCAGTCTAACATCAGATCGGACTGAGGGTTGCGGCAGTAGGATCGACAGCAC
GCAGGGGGGATCGGGTCGATCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAC
ACTCGTTTCATGGGTTGGCTTAGGCAT
Found at i:31585713 original size:26 final size:26
Alignment explanation
Indices: 31585682--31585734 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31585672 GTTGACTTAG
31585682 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
**
31585708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
31585734 G
1 G
31585735 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:31586496 original size:26 final size:26
Alignment explanation
Indices: 31586466--31586518 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31586456 GTTGACTTAG
31586466 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
31586492 GCATACGAAGTTTATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31586518 G
1 G
31586519 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31586823 original size:159 final size:155
Alignment explanation
Indices: 31586632--31586991 Score: 359
Period size: 154 Copynumber: 2.3 Consensus size: 155
31586622 CGCACGCCCA
** * * * ** *
31586632 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGGCAGACTGAGGGTT
1 TTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAG---CA-GAAAACCAAGGATT
* * **
31586697 GCGGTAGCAAGATCGACAGCATGC-AGAGGGGGATCGAATT-GATCATTGGCTTGCGCATTGTGC
62 GCGGTAGCAAGATCGACAGCATGCAAG-GGGGGACCG-ATTCGATCATCGGCTTGCGCATTCCGC
* *
31586760 CTCTCCGATCGGCTCAGCGCCCAAACGCTCG
125 CTCTCCGACCGACTCAGCGCCCAAACGCTCG
* * *
31586791 TTTCGTGGTTTAACTTAGGCATACGGAGTTCATTCCCA-GCCTAAG-ATAAAACCAAGGATTGCG
1 TTTCGTGGGTTAACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAGAAAACCAAGGATTGCG
* * * * *
31586854 GTAGCAAGATTGATAGCATGCAAGGGGGGACCGGTTCGATCCTCGGCTTGTGCATTCCGCCTCTC
65 GTAGCAAGATCGACAGCATGCAAGGGGGGACCGATTCGATCATCGGCTTGCGCATTCCGCCTCTC
* * *
31586919 CGACCGACTGAGCGCTCACACGCTCG
130 CGACCGACTCAGCGCCCAAACGCTCG
* ** * *
31586945 TTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTGTAAGCA
1 TTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
31586992 TACAGAGTTC
Statistics
Matches: 164, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
153 5 0.03
154 116 0.71
155 4 0.02
159 36 0.22
160 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (155 bp):
TTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGAAAACCAAGGATTGCGG
TAGCAAGATCGACAGCATGCAAGGGGGGACCGATTCGATCATCGGCTTGCGCATTCCGCCTCTCC
GACCGACTCAGCGCCCAAACGCTCG
Found at i:31586916 original size:154 final size:154
Alignment explanation
Indices: 31586695--31586980 Score: 369
Period size: 154 Copynumber: 1.9 Consensus size: 154
31586685 AGACTGAGGG
* * **
31586695 TTGCGGTAGCAAGATCGACAGCATGCAGAGGGGGATCGAATTGATCATTGGCTTGCGCATTGTGC
1 TTGCGGTAGCAAGATCGACAGCATGCAGAGGGGGACCGAATTGATCATCGGCTTGCGCATTCCGC
* * * *
31586760 CTCTCCGATCGGCTCAGCGCCCAAACGCTCGTTTCGTGGTTTAACTTAGGCATACGGAGTTCATT
66 CTCTCCGACCGACTCAGCGCCCAAACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATT
31586825 CCCAGCCTAAGATAAAACCAAGGA
131 CCCAGCCTAAGATAAAACCAAGGA
* * * * *
31586849 TTGCGGTAGCAAGATTGATAGCATGCA-AGGGGGGACCG-GTTCGATCCTCGGCTTGTGCATTCC
1 TTGCGGTAGCAAGATCGACAGCATGCAGA-GGGGGACCGAATT-GATCATCGGCTTGCGCATTCC
* * * * **
31586912 GCCTCTCCGACCGACTGAGCGCTCACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCA
64 GCCTCTCCGACCGACTCAGCGCCCAAACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCA
31586977 TTCC
129 TTCC
31586981 ATGTGTAAGC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
153 3 0.03
154 108 0.97
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (154 bp):
TTGCGGTAGCAAGATCGACAGCATGCAGAGGGGGACCGAATTGATCATCGGCTTGCGCATTCCGC
CTCTCCGACCGACTCAGCGCCCAAACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATT
CCCAGCCTAAGATAAAACCAAGGA
Found at i:31587015 original size:26 final size:26
Alignment explanation
Indices: 31586963--31587015 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31586953 GTTGGCTTAG
* *
31586963 GCATACGAAGTTCATTCCATGTGTAA
1 GCATACGAAGTTCATTCCACGTCTAA
*
31586989 GCATAC-AGAGTTCATTCCCCGTCTAA
1 GCATACGA-AGTTCATTCCACGTCTAA
31587015 G
1 G
31587016 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCACGTCTAA
Found at i:31587203 original size:26 final size:26
Alignment explanation
Indices: 31587172--31587224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31587162 GTTGACTTAG
31587172 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31587198 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31587224 G
1 G
31587225 ATTGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31587392 original size:26 final size:26
Alignment explanation
Indices: 31587356--31587408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31587346 GTTGGCTTAG
31587356 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
31587382 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31587408 G
1 G
31587409 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31588108 original size:26 final size:26
Alignment explanation
Indices: 31588078--31588130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31588068 GTAGACTTAG
*
31588078 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31588104 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31588130 G
1 G
31588131 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31590456 original size:26 final size:26
Alignment explanation
Indices: 31590419--31590471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31590409 GTTGGCTTAG
*
31590419 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
31590445 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
31590471 G
1 G
31590472 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:31590811 original size:25 final size:25
Alignment explanation
Indices: 31590777--31590825 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
31590767 TTGACTTCGG
*
31590777 CATATGGAGTTCATCCCCAGTCTAA
1 CATAAGGAGTTCATCCCCAGTCTAA
*
31590802 CATAAGGAGTTCATTCCCAGTCTA
1 CATAAGGAGTTCATCCCCAGTCTA
31590826 TGATCGGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (25 bp):
CATAAGGAGTTCATCCCCAGTCTAA
Found at i:31590952 original size:355 final size:355
Alignment explanation
Indices: 31590204--31591063 Score: 819
Period size: 355 Copynumber: 2.5 Consensus size: 355
31590194 CTGGCTTGTG
* * * * * *
31590204 CATTATGCCTCTCC-GATCGGCTTAGCGCCCGCACGCTCGTTTCATGCGTTGACTTAGGCATGC-
1 CATTATGCCTCTCCAG-CCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
* * * * * * * *
31590267 AGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTACAGTAGCAGGATCAACAGCACAC
65 A-AGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGC
* * * * * *
31590332 AGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCG---A---T-T--G--G-CTG
129 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGTCTCTTCGACCAGCCTCTCCGTCGACTG
* * * ** * * *
31590385 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
194 AGCACCCGTACGCTCGTTTTATAGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATA
* * * * * *
31590450 CGAAGTTCATTCCCTGTCTAAGATCGGACCGAACTGAGGGTTATGACAGCAGGATCGACAGCATG
259 AGAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCAAGATCGACAGCATG
* * *
31590515 TAAGGGGGGACCGAGATAATCCTCGGCTTGTA
324 TAAGAGGGGACCGAGATAATCCTCGGCCTGCA
* * * * * * * *
31590547 CATTCTGCCTCTCTAGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTATGCCTCTCCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * *
31590612 AGTTCATT-CCATGTCTAAGACCCAG-CCGGACTGAGGGTTATG-GGCAGTAGGATCGACAGCAC
66 AGTTCATTCCCA-GTCTAAGA-CCAGACCGGACCGAGGG-T-TGCAGCAGCAGGATCGACAGCAC
*
31590674 GCAGAGGGGGATCGGG-CTGATCCCCGGCTTGTGCATTATGTCTCTTCGACCAGCCTCTCCGTCG
127 GCAG-GGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATGTCTCTTCGACCAGCCTCTCCGTCG
* *
31590738 ACTGAGCACCCGTACGCTCGTTTTATAGGTTGACTTCGGCATATGGAGTTCATCCCCA-GTCTAA
190 ACTGAGCACCCGTACGCTCGTTTTATAGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* * * * *
31590802 -CATAAGGAGTTCATTCCCAGTCTATGATCGGATCAAACCGAGGGTTACGGCAGCAAGATCGATA
254 GCATAAGAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCAAGATCGACA
* * * *
31590866 GCATG-CAGAGGGGACCG-GGTCGATCCTCGGCCTGCG
319 GCATGTAAGAGGGGACCGAGAT-AATCCTCGGCCTGCA
* * * ** * *
31590902 TATTATGCCTCTCCGGCTGGCTCAGTGCCTTCACGCTCATTTTATGGGTTGACTTGGGCATACGA
1 CATTATGCCTCTCCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
*** * *
31590967 AGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAG
66 AGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAG
*
31591032 GGGGGATTGGGTCGATCCCCGGCTTGCGCATT
131 GGGGGATCGGGTCGATCCCCGGCTTGCGCATT
31591064 CTGCCTCTCC
Statistics
Matches: 412, Mismatches: 79, Indels: 42
0.77 0.15 0.08
Matches are distributed among these distances:
342 3 0.01
343 77 0.19
344 25 0.06
345 36 0.09
348 1 0.00
351 1 0.00
352 1 0.00
353 30 0.07
354 27 0.07
355 97 0.24
356 62 0.15
357 49 0.12
358 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (355 bp):
CATTATGCCTCTCCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
AGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAG
GGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGTCTCTTCGACCAGCCTCTCCGTCGACTGAG
CACCCGTACGCTCGTTTTATAGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATAAG
AAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCAAGATCGACAGCATGTA
AGAGGGGACCGAGATAATCCTCGGCCTGCA
Found at i:31591463 original size:159 final size:158
Alignment explanation
Indices: 31590802--31591464 Score: 548
Period size: 159 Copynumber: 4.2 Consensus size: 158
31590792 CCCAGTCTAA
* * * * * * * *
31590802 CATAAGGAGTTCATTCCCAGTCTATGATCGGATCAAACCGAGGGTTACGGCAGCAAGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAAGATCGACAG
* * * * * * * * * * * *
31590867 CATGCAGAGGGGACCGGGTCGATCCTCGGCCTGCGTATTATGCCTCTCCGGCTGGCTCAGTGCCT
66 CACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCT
* * *
31590932 TCACGCTCATTTTATGGGTTGACTTGGG
131 GCACGCTCATTTCATGGGTTGACTTAGG
* ** * *
31590960 CATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGC-AGTAGCAGGATCGACA
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGA-CAGCAAGATCGACA
* * * *
31591024 GCACGCAGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGGTTGAGCG-C
65 GCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCC
* * * *
31591088 TCGCACGCCCGTTTCGTGGGTTGGCTTAGG
130 T-GCACGCTCATTTCATGGGTTGACTTAGG
**** * * * ** *
31591118 CATA-GAGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACTGAGGGTTGTGGCAGTGAGACCGA
1 CATACG-GAGTTCATTCCCA-GTCTAAGATTGGA-CCAGACCGAGGGTTGCGACAGCAAGATCGA
** * **
31591180 CAGCACGCAGAGGGGGATCGGGTCGATCCTTGACTTGCGCATTATGCCTCTTCGGTCGGCTT-AG
63 CAGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGG-TTGAG
*** *
31591244 CGCCCATATGCTCATTTCATGGGTTGACTTATGG
126 CGCCTGCACGCTCATTTCATGGGTTGACTTA-GG
* * * *
31591278 -ATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAAGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAAGATCGACAG
* * * * * **
31591342 CACACAGGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTACCTCTTCGATTGGTTGAGCGCC
66 CACGCA-GGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCC
* * * * *
31591407 TGCACGCTCGTTTCGTTGGTAGGCTTAGG
130 TGCACGCTCATTTCATGGGTTGACTTAGG
*
31591436 CATACGGAGTTCATTCTCAGTCTAAGATT
1 CATACGGAGTTCATTCCCAGTCTAAGATT
31591465 TTGAGCCACG
Statistics
Matches: 392, Mismatches: 97, Indels: 31
0.75 0.19 0.06
Matches are distributed among these distances:
157 7 0.02
158 172 0.44
159 203 0.52
160 10 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAAGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCT
GCACGCTCATTTCATGGGTTGACTTAGG
Found at i:31592498 original size:26 final size:25
Alignment explanation
Indices: 31592462--31592513 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
31592452 GTTGGCTTAG
31592462 GCATAAGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCA-GTCTAA
*
31592488 GCATATGGAGTTCATTCCAGTCTAA
1 GCATAAGGAGTTCATTCCAGTCTAA
31592513 G
1 G
31592514 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATAAGGAGTTCATTCCAGTCTAA
Found at i:31593231 original size:26 final size:26
Alignment explanation
Indices: 31593195--31593247 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31593185 GTTAACTTAG
31593195 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31593221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31593247 G
1 G
31593248 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31593522 original size:159 final size:159
Alignment explanation
Indices: 31593221--31593724 Score: 462
Period size: 159 Copynumber: 3.2 Consensus size: 159
31593211 CCCAGTCTAA
***** * * * * * *
31593221 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCAAGGGTTGCGATAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCAGACCAAGGGTTGCAACAGCAAGACCGAC
* * * *
31593285 AGCACG-A-ATGGGGGATCAGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGC
65 AGCACGCAGA-GGGGGACCAGATCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGC
*
31593348 GCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
129 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *** **
31593379 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAAACCAGACCAAGGGTTGCAACAGCAAGACCGACA
* * * * * * *
31593444 GCACGCAGAGGGGGACCAGATCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGTGG
66 GCACGCAGAGGGGGACCAGATCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGC
* *
31593509 CCGCACGCTCGTTTCGT-GGTTGAACTTAG
131 CCGCATGCTCGTTTCGTGGGTTG-GCTTAG
* *** * * *
31593538 GCATACAGAGTTCATTACCA-GTCTAAGATGAAACCAGACCAAGGGTTGCAATAGCAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCAGACCAAGGGTTGCAACAGCAAGACCGAC
* * * * * * *
31593602 AGCATGCATAGGGGGACC-GAGTTGGTCCCTGGCTTGTGCATTCTACCTCTCCGATCGGTTGAGC
65 AGCACGCAGAGGGGGACCAGA-TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGC
*
31593666 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
129 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
31593697 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
31593725 ATATGGAGTT
Statistics
Matches: 270, Mismatches: 68, Indels: 15
0.76 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 59 0.22
159 199 0.74
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAAACCAGACCAAGGGTTGCAACAGCAAGACCGACA
GCACGCAGAGGGGGACCAGATCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGC
CCGCATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31593727 original size:26 final size:26
Alignment explanation
Indices: 31593697--31593749 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31593687 GTTGGCTTAG
31593697 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
31593723 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
31593749 G
1 G
31593750 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:31593859 original size:185 final size:184
Alignment explanation
Indices: 31593538--31594093 Score: 641
Period size: 185 Copynumber: 3.0 Consensus size: 184
31593528 TTGAACTTAG
* * * * *** * *
31593538 GCATACAGAGTTCATTACCAGTCTAAGATGAAACCAGACCAAGGGTTGCAATAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTGCGGCAGCAGGATCGACA
* * ** * * ** * *
31593603 GCATGCATAGGGGGACCGAGTTGGTCCCTGGCTTGTGCATTCTACCTCTCCGATCGGTTGAGCGC
66 GCACGCA-GGGGGGACCGAGCCGGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCAC
*
31593668 CCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
31593723 GCATATGGAGTTCATTCTCAGTCTAAGATCAAATCAGACC-GGGAGTTGCTGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCAAGG-GTTGCGGCAGCAGGATCGAC
* *
31593787 AGCACGTCGGGGGGGACCGAGCCGGTCCCCGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCA
65 AGCACG-CAGGGGGGACCGAGCCGGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCA
* *
31593852 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
129 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
**
31593908 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * * *
31593973 GCATGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCGACTAAGCACC
66 GCACGCAGGGGGGACCGAGCCGGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACC
* * * * *
31594038 AGCACGCCCG-TTCTGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAA
131 CGCATGCTCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
31594092 GC
1 GC
31594094 CCCAACCGGA
Statistics
Matches: 313, Mismatches: 52, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
183 6 0.02
184 92 0.29
185 209 0.67
186 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACC
CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:31593911 original size:26 final size:26
Alignment explanation
Indices: 31593882--31593934 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31593872 GTTGACTTAG
31593882 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31593908 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31593934 G
1 G
31593935 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31594209 original size:159 final size:159
Alignment explanation
Indices: 31593908--31594411 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 159
31593898 CCCAGTCTAA
** ** * * * ** *
31593908 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTACGATAGCAGGACCGAC
* * * * * * * * * * *
31593972 AGCATGC-AGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCGACTAAGCA
65 AGCACGCAAAGGTGGATCGAGCCAATCCCCGACTTGCGCATTATACCTCTCCAGTCGGCTCAGCA
* *
31594036 CCAGCACGCCCGTTCTGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTCTGTGGGTTGGCTTAG
* * * * ** *
31594066 GCATAGGGAGTTAATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTTG-TAGCGGGACC-AG
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTT-ACGATAGCAGGACCGA-
* * * * * * *
31594129 CAGCACGCAGAAGG-GGATTGAGCCAATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGTTCAG
64 CAGCACGCA-AAGGTGGATCGAGCCAATCCCCGACTTGCGCATTATACCTCTCCAGTCGGCTCAG
* * *
31594193 CACCCGTACGCTCGTTCTGTGGGTTGACTTAT
128 CACCCGCACGCTCGTTCTGTGGGTTGGCTTAG
* ** ** *
31594225 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTACGATAGCAGGACCGAC
* * * * * * *
31594289 AGCACGCAAGGGTGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGCG
65 AGCACGCAAAGGTGGATCGAGCCAATCCCCGACTTGCGCATTATACCTCTCCAGTCGGCTCAGCA
31594354 CCCGCACGCTCGTT-TCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTCT-GTGGGTTGGCTTAG
* *
31594384 GCATATGGTGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
31594412 ATACAGAGTT
Statistics
Matches: 266, Mismatches: 69, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 55 0.21
159 200 0.75
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTACGATAGCAGGACCGACA
GCACGCAAAGGTGGATCGAGCCAATCCCCGACTTGCGCATTATACCTCTCCAGTCGGCTCAGCAC
CCGCACGCTCGTTCTGTGGGTTGGCTTAG
Found at i:31594438 original size:687 final size:687
Alignment explanation
Indices: 31593125--31594438 Score: 1829
Period size: 687 Copynumber: 1.9 Consensus size: 687
31593115 ACCCGTTCGA
* * *
31593125 TCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAA
1 TCCCCGGCTTGCGCATCCTACCTCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTAA
*
31593190 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
66 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * *
31593255 CAGACCAAGGGTTGCGATAGTAGGATCGATAGCACGAATGGGGGATCAGACCGATCCCTGGCTTG
131 CAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGAAGGGGGGATCAGACCGATCCCCGACTTA
* * ** * * * *
31593320 CGCATTCTGCCTCTTCGGCCGGTTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAG
196 CGCATTCTGCCTCTCCAGCCGACTAAGCACCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
* *
31593385 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
261 GGAGTTAATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
* * * ***
31593450 AGAGGGGGACCAGATCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGTGGCCGCAC
326 AGAAGGGGACCAGACCAATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACCCGCAC
31593515 GCTCGTTTCGTGGTTGAACTTAGGCATACAGAGTTCATTACCAGTCTAAGATGAAACCAGACCAA
391 GCTCGTTTCGTGGTTGAACTTAGGCATACAGAGTTCATTACCAGTCTAAGATGAAACCAGACCAA
* * * * * * * *
31593580 GGGTTGCAATAGCAAGATCGATAGCATGCATAGGGGGACCGAGTTGGTCCCTGGCTTGTGCATTC
456 GGGTTACAATAGCAAGATCGACAGCACGCATAGGGGGACCGAGTCGATCCCCGACTTGCGCATTC
* *
31593645 TACCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
521 TACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
** * *
31593710 ATTCCATGTCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCAAATCAGACCGGGAGTTGCTGC
586 ATTCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAAATCAGACCGGGAGTTGCTGC
31593775 AGCAGGATCGACAGCACGTCGGGGGGGACCGAGCCGG
651 AGCAGGATCGACAGCACGTCGGGGGGGACCGAGCCGG
* * * *
31593812 TCCCCGGCTTGCGCATTCTACCTCT-TCGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTG
1 TCCCCGGCTTGCGCATCCTACCTCTCT-GGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTA
31593876 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
65 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * *
31593941 TCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGATCGGGCCGATCCCCGACTT
130 CCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGAAGGGGGGATCAGACCGATCCCCGACTT
31594006 ACGCATTCTGCCTCTCCAGCCGACTAAGCACCAGCACGCCCG-TTCTGTGGGTTGGCTTAGGCAT
195 ACGCATTCTGCCTCTCCAGCCGACTAAGCACCAGCACGCCCGTTTC-GTGGGTTGGCTTAGGCAT
* *
31594070 AGGGAGTTAATTCCATGTCTAAGCCCCAACCGGA-CTGAGGGTTGTTGTAGCGGGACC-AGCAGC
259 AGGGAGTTAATTCCATGTCTAAGCCCCAACCGGATC-GAGGGTTGTGGCAGCGGGACCGA-CAGC
** ** * *
31594133 ACGCAGAAGGGGA-TTGAGCCAATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGTTCAGCACC
322 ACGCAGAAGGGGACCAGA-CCAATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACC
* * * *
31594197 CGTACGCTCG-TTCTGTGGGTTG-ACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCG-GAC
386 CGCACGCTCGTTTC-GT-GGTTGAACTTAGGCATACAGAGTTCATTACCAGTCTAAGAT-GAAAC
* * * * *
31594259 CAGACCGAGGGTTACGATAGCAGGATCGACAGCACGCA-AGGGTGGATCGGGTCGATCCCCGACT
448 CAGACCAAGGGTTACAATAGCAAGATCGACAGCACGCATAGGG-GGACCGAGTCGATCCCCGACT
*
31594323 TGCGCATTCTACCTCTCC-AGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
512 TGCGCATTCTACCTCTCCGA-TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* *
31594387 TATGGTGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGAT
576 TACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGAT
31594439 TTTGAGCCAC
Statistics
Matches: 546, Mismatches: 71, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
686 16 0.03
687 524 0.96
688 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (687 bp):
TCCCCGGCTTGCGCATCCTACCTCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTAA
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGAAGGGGGGATCAGACCGATCCCCGACTTA
CGCATTCTGCCTCTCCAGCCGACTAAGCACCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTAATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
AGAAGGGGACCAGACCAATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACCCGCAC
GCTCGTTTCGTGGTTGAACTTAGGCATACAGAGTTCATTACCAGTCTAAGATGAAACCAGACCAA
GGGTTACAATAGCAAGATCGACAGCACGCATAGGGGGACCGAGTCGATCCCCGACTTGCGCATTC
TACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAAATCAGACCGGGAGTTGCTGC
AGCAGGATCGACAGCACGTCGGGGGGGACCGAGCCGG
Found at i:31600992 original size:26 final size:26
Alignment explanation
Indices: 31600943--31600995 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31600933 GTTGGCTTAG
*
31600943 GCATACAGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
31600969 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
31600995 G
1 G
31600996 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:31601535 original size:185 final size:184
Alignment explanation
Indices: 31601210--31601707 Score: 556
Period size: 185 Copynumber: 2.7 Consensus size: 184
31601200 CGACAGCGGT
* * * * * ** * * *
31601210 ATCGACAGCACGTAGAGGGGGATCGAGCTAATCCCCGGCTTATGTATTATGCCTCTCCGACTGGC
1 ATCGACAGCACGCAG-GAGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGC
* * * * *
31601275 TGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAAGC
65 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
* * * * * *
31601339 ATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCACCAGG
129 ATATCGAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAAGGTTGCGGCAACAGG
** * * * * *
31601395 ATCGGTAGCATGCA-GAGGGGACC-AGGCTGATCCTCGGCTTGCGTATTCTGTCTCTCCGG-TCG
1 ATCGACAGCACGCAGGA-GGGACCGA-GCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCT-G
* * *
31601457 GCTGAGTGCCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
63 GCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
31601522 GCATATCGAGTTCATTCCCAGTCCAAGATCGGACTAGACTGAAGGTTGCGGCAACAGG
127 GCATATCGAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAAGGTTGCGGCAACAGG
* * *
31601580 ATCGACAGTACGCAGGAGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGGCT
1 ATCGACAGCACGCAGGAGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCT
* *
31601645 GAGCGCCCGCACGCTCGTTTTGTGGGTT-GCTTTAGGCATATGGAGTTCATTCCATGTCTAAGC
66 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGC-TTAGGCATACGGAGTTCATTCCATGTCTAAGC
31601708 CCCAGCCGAA
Statistics
Matches: 261, Mismatches: 43, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
183 5 0.02
184 95 0.36
185 157 0.60
186 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (184 bp):
ATCGACAGCACGCAGGAGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
ATCGAGTTCATTCCCAGTCCAAGATCGGACCAGACCGAAGGTTGCGGCAACAGG
Found at i:31601901 original size:553 final size:545
Alignment explanation
Indices: 31600784--31602103 Score: 1667
Period size: 553 Copynumber: 2.4 Consensus size: 545
31600774 GTTGACTTAG
* ** * *
31600784 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTAAGGGTTGCAGCAGCAGGATCGATA
1 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * *
31600849 GCAAGCAGGGAGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGA--GC
66 GCATGCAGGG-GGGATCGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGC
* * * ** *
31600912 ACCGGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTGCATGTCTAAGCATA-CG
129 -CCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATATC-
* * *
31600976 GAGTTCATTCCTAGTCTAAGATCAGACCGGACAGAGGGTTGCAGCAGCAGGACCAGCAGCAGGAT
192 GAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAAGGTT-----AGCAGGA-CA-CAGCAGGAT
** * * **
31601041 CGGTAGCACGCATGGGGGGACTGGGCCGATCTTCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTG
250 CGACAGCACGCATGGAGGGACTGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTG
* *
31601106 AGCACCCGTACGCTGATTTTGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
315 AGCACCCGCACGCTGATTTTGTGGGTTGCTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * * *
31601171 AGTCGGACCGAAGGTTGTGGCAGCAGGACCGACAGCGGTATCGACAGCACGTAGAGGGGGATCGA
380 AGCCGAACCGAAGGTTGTGGCAGCAGGACCGACAGCGATATCAACAGCACGTAGAGGGGGACCGA
* * * * * *
31601236 GCTAATCCCCGGCTTATGTATTATGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTAG
445 GCTAATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTGAGAGCCCGCACGCTCATTTCCTAG
*
31601301 GTTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
510 GCTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
* *
31601337 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCACCAGGATCGGTA
1 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * *
31601402 GCATGCAGAGGGGACCAGGCTGAT-CCTCGGCTTGCGTATTCTGTCTCTCCGGTCGGCTGAGTGC
66 GCATGCAGGGGGGATC-GGCTGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGC
31601466 CCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATATCGA
129 CCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATATCGA
* * * * *
31601531 GTTCATTCCCAGTCCAAGATCGGACTAGACTGAAGGTT-GC-GG-CA-A-CAGGATCGACAGTAC
194 GTTCATTCCCAGTCTAAGATCAGACCAGACAGAAGGTTAGCAGGACACAGCAGGATCGACAGCAC
* *
31601591 GCA-GGAGGGA-TCGAGCTGATCCCC-GACTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCCC
259 GCATGGAGGGACT-GAGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCACCC
*
31601653 GCACGCTCG-TTTTGTGGGTTGCTTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
322 GCACGCT-GATTTTGTGGGTTGCTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* * * * *
31601717 ACCGAGGGTTGTGGCAGCAGGACTGACAGTGATATTAACAGCACGTAGAGGGGGACCGGGCTAAT
386 ACCGAAGGTTGTGGCAGCAGGACCGACAGCGATATCAACAGCACGTAGAGGGGGACCGAGCTAAT
* * *
31601782 CCTCGACTTGCGCATTATGCCTCTCCGACTGGCCTCATCGGCCGACTGAGCACTCGGACGCTCAT
451 CCCCGACTTACGCATTATGCCTCTCCGACTGG---C-T-----GA--GAGC-C-CGCACGCTCAT
31601847 TTCCTAGGCTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
503 TTCCTAGGCTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
* * * *
31601890 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGGCA
1 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * *
31601955 GCATGCAGGGGGGATCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCAGTCGGCTGAGTGCC
66 GCATGCAGGGGGGATC-GGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
*
31602020 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATATGGAG
130 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATATCGAG
31602085 TTCATTCCCAGTCTAAGAT
195 TTCATTCCCAGTCTAAGAT
31602104 TTTGAGCCAC
Statistics
Matches: 669, Mismatches: 76, Indels: 44
0.85 0.10 0.06
Matches are distributed among these distances:
539 2 0.00
540 190 0.28
541 16 0.02
542 1 0.00
543 1 0.00
544 3 0.00
546 2 0.00
547 2 0.00
549 2 0.00
551 6 0.01
552 38 0.06
553 400 0.60
554 6 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (545 bp):
GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
GCATGCAGGGGGGATCGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCC
TGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATATCGAGT
TCATTCCCAGTCTAAGATCAGACCAGACAGAAGGTTAGCAGGACACAGCAGGATCGACAGCACGC
ATGGAGGGACTGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCACCCGCAC
GCTGATTTTGTGGGTTGCTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGA
AGGTTGTGGCAGCAGGACCGACAGCGATATCAACAGCACGTAGAGGGGGACCGAGCTAATCCCCG
ACTTACGCATTATGCCTCTCCGACTGGCTGAGAGCCCGCACGCTCATTTCCTAGGCTGACTTAGG
CATACGAAGTTCATCCCCAATCTAA
Found at i:31602085 original size:26 final size:26
Alignment explanation
Indices: 31602049--31602101 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31602039 GTTGGCTTAG
31602049 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
*
31602075 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
31602101 G
1 G
31602102 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:31602806 original size:26 final size:26
Alignment explanation
Indices: 31602770--31602822 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31602760 GTTGACTTAG
31602770 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31602796 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31602822 G
1 G
31602823 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31603308 original size:26 final size:26
Alignment explanation
Indices: 31603272--31603324 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31603262 GTTGGCTTAG
31603272 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
31603298 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
31603324 G
1 G
31603325 ATCGAACCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:31603676 original size:26 final size:26
Alignment explanation
Indices: 31603640--31603692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31603630 GTTGACTTAG
31603640 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31603666 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31603692 G
1 G
31603693 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31611291 original size:158 final size:159
Alignment explanation
Indices: 31610792--31611293 Score: 547
Period size: 159 Copynumber: 3.2 Consensus size: 159
31610782 CCCAATCTAA
* *
31610792 GCATACGGAGTTCATTCCCA-GTCAAAGATCAGATCGGACCGAGGGTT-CCGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCCG-CAGCAGGATCGA
* * * * * *
31610855 CAGCACGCAGG-GGGGACCGGGCCAATCC-CTGACTTGTGCATTTTGCCTCTCTGACCGACTGAG
64 CAGCACGCAGGAGGGGACCGGGTCGATCCTC-GGCTTGCGCATTATGCCTCTCCGACCGACTGAG
* *
31610918 TGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** * * *
31610950 GCATAGGGAGTTCATTCCATGTCCAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCCGCAGCAGGATC-GA
* * * *
31611013 CAGCACGTA-GAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAA
64 CAGCACGCAGGA-GGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGACTGAG
* *
31611077 TGCCCGCACGCTCGTTGCGTGGGTTGACTTAG
128 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
31611109 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGATCGGACCGGGGGTTGCCGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGCCGCAGCAGGATCGAC
* * * *
31611173 AGCACACAGGAGGGGACCGGATCGATCCTCGGCTTGCGCA-TCTGCCTCTCC-AGCCGACTGAGC
65 AGCACGCAGGAGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGA-CCGACTGAGT
* *
31611236 GCCCGCATGCTTGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
31611267 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31611294 CATACGGAGT
Statistics
Matches: 281, Mismatches: 50, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 6 0.02
158 119 0.42
159 152 0.54
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCCGCAGCAGGATCGACA
GCACGCAGGAGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGTGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31611296 original size:26 final size:26
Alignment explanation
Indices: 31611267--31611319 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31611257 GTTGGCTTAG
31611267 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31611293 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31611319 G
1 G
31611320 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31611634 original size:159 final size:157
Alignment explanation
Indices: 31611332--31611636 Score: 371
Period size: 159 Copynumber: 1.9 Consensus size: 157
31611322 CAGATCGGAT
* * * * * *
31611332 TGAGGGTTGCGGTAGTAGGATCGACAGCACGTAGGGGGACCGAGCTGATGCTCGGCTTGCACATT
1 TGAGGGTTGCGGCAGTAGGATCGACAGCACGGAGGGGGACCGAGCTGATCCCCAGCTTGCAAATT
* * * * * *
31611397 CTATCGCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTG
66 ATACCGCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTG
*
31611462 CATTCCATGTCTAAGCCCCAGCCGAAC
131 CATTCCATATCTAAGCCCCAGCCGAAC
* *
31611489 TGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCAAA
1 TGAGGGTTGCGGCAGTAGGATCGACAGCACG--GAGGGGGACCGAGCTGATCCCCAGCTTGCAAA
* * * * *
31611554 TTATGCCTCTTCGACCGGCTGAACGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAA
64 TTATACCGCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG-A
*
31611618 GTTCATATCCA-ATCTAAGC
128 GTGCAT-TCCATATCTAAGC
31611637 ATATGGAGTT
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 29 0.24
158 1 0.01
159 89 0.72
160 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TGAGGGTTGCGGCAGTAGGATCGACAGCACGGAGGGGGACCGAGCTGATCCCCAGCTTGCAAATT
ATACCGCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTG
CATTCCATATCTAAGCCCCAGCCGAAC
Found at i:31612351 original size:26 final size:26
Alignment explanation
Indices: 31612313--31612365 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31612303 GTTGACTTAG
*
31612313 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
31612339 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31612365 G
1 G
31612366 ATTGGACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31612701 original size:159 final size:159
Alignment explanation
Indices: 31612412--31612843 Score: 354
Period size: 159 Copynumber: 2.7 Consensus size: 159
31612402 CAACACACAG
* * * * * *
31612412 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCGGGCCGACTGAGCACCCGCACACC
1 GGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCGGGCCGACTCAGCACCCACACACC
** * * *
31612477 CGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCTGACCGAGGG
66 CGTTTCGTGGGTTAACTTTGGCATACGGAGTTCATTCCATGTCTAAGCACCAAACTGACCGAGGG
31612542 TTGTGGCAGCAGGATTGAAAGCATGCAGA
131 TTGTGGCAGCAGGATTGAAAGCATGCAGA
* *
31612571 GGGGGACCGGGCCGATCCTCATCTTGCACATTATGCCTCTTC-GGCC-ATCTCAGCACCCACACA
1 GGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTC-TCGGGCCGA-CTCAGCACCCACACA
* * * *
31612634 CTCGTTTTGTGGGTTAACTTAT-GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAAACTAGACT
64 CCCGTTTCGTGGGTTAACTT-TGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAAACT-GACC
** * * * *
31612696 GAGGGTTACGACAGCAGGA-TCAACAGCACGTAGA
126 GAGGGTTGTGGCAGCAGGATTGAA-AGCATGCAGA
* ** * * * * * * * * * * * * * *
31612730 GGGGAACTAGGTCGATTCTCGGCTTACGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCT
1 GGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCGGGCCGACTCAGCACCCACACACC
* * ** * *
31612795 CATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGCA
66 CGTTTCGTGGGTTAACTTTGGCATACGGAGTTCATTCCATGTCTAAGCA
31612844 TGTGGAGTTC
Statistics
Matches: 217, Mismatches: 45, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
158 12 0.06
159 199 0.92
160 6 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
GGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCGGGCCGACTCAGCACCCACACACC
CGTTTCGTGGGTTAACTTTGGCATACGGAGTTCATTCCATGTCTAAGCACCAAACTGACCGAGGG
TTGTGGCAGCAGGATTGAAAGCATGCAGA
Found at i:31613572 original size:26 final size:26
Alignment explanation
Indices: 31613536--31613588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31613526 GTTGACTTTG
31613536 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
31613562 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
31613588 G
1 G
31613589 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:31614224 original size:172 final size:171
Alignment explanation
Indices: 31613931--31614242 Score: 437
Period size: 172 Copynumber: 1.8 Consensus size: 171
31613921 AAGGATTGCA
* * * * *
31613931 GTAGTAGGATCGACAGCACGCAGGGGGGAGAGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
1 GTAGTAGGATCGACAGCACACAGAGGGGACAGGGCCGATCCCCGGCTTACACATTATGCCTCTCC
* * * *
31613996 GACCGGTTGAGTGCCCGCACGGTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
66 GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
31614061 ATAAGCATACAGTCGGACAGAGGGTTGTGGCAGCAGGACCG
131 ATAAGCATACAGTCGGACAGAGGGTTGTGGCAGCAGGACCG
* ** * *
31614102 GTAGTAGGATCGACAGCACACAGAAGGGGACCGGGTTGATCCCCGGCTTGCACATTATGCCTTTC
1 GTAGTAGGATCGACAGCACACAG-AGGGGACAGGGCCGATCCCCGGCTTACACATTATGCCTCTC
* **
31614167 C-AGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAT
65 CGA-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
*
31614231 GTCTAAGCATAC
129 GTATAAGCATAC
31614243 GGAGTTCATT
Statistics
Matches: 121, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
171 23 0.19
172 98 0.81
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (171 bp):
GTAGTAGGATCGACAGCACACAGAGGGGACAGGGCCGATCCCCGGCTTACACATTATGCCTCTCC
GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
ATAAGCATACAGTCGGACAGAGGGTTGTGGCAGCAGGACCG
Found at i:31614247 original size:26 final size:26
Alignment explanation
Indices: 31614211--31614289 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
31614201 GTTGGCTTAG
*
31614211 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31614237 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31614263 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
31614289 G
1 G
31614290 ATTTGGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:31614988 original size:26 final size:26
Alignment explanation
Indices: 31614958--31615008 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31614948 TTGACTTAGG
31614958 CATACAGAGTTCA-TCCCTAGTCTAAA
1 CATACAGAGTTCATTCCC-AGTCTAAA
*
31614984 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
31615009 GATCGGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:31615277 original size:159 final size:158
Alignment explanation
Indices: 31614984--31615642 Score: 543
Period size: 158 Copynumber: 4.2 Consensus size: 158
31614974 CTAGTCTAAA
** * * ** *
31614984 CATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCA
1 CATACGGAGTTCATTCCCAGTCTAAGCCCCTG-CCGGACCGAGGGTTGTGGCAGCAGGA-CAGCA
* * * * * * * * *
31615048 GCACGCA-AGGGGGACCAGGTCAATCCCCGGCTTGCGCATTCTGTCTCTCCGACCGACTTAGCAC
64 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG-GCGGCTCAGCGC
* * *
31615112 CTGCACGGC-CGTTTCGTGGGTTGGCTTAGG
128 CCGCACGGCTCGTTTCATGGGTTGACTTAGG
* * * *
31615142 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTAGGACCAGCA
1 CATACGGAGTTCATTCCCA-GTCTAAGCCCCTGCCGGACCGAGGGTTGTGGCAGCAGGA-CAGCA
* * ** * *
31615206 GAACGTAGAGGGGGATTGGGCCGATCCCCGACTTGCGCATTAAGCCTCTCCGGTCGGCTCAGCGC
64 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGG-CGGCTCAGCGC
31615271 CCGCAC-GCTCGTTTCATGGGTTGACTTAGG
128 CCGCACGGCTCGTTTCATGGGTTGACTTAGG
** ** * ** *
31615301 CATACGGAGTTCATTCCCAGTCTAAG-GTCTGACCAAACCGAGGGATACGGTAGCAGGATC-GAC
1 CATACGGAGTTCATTCCCAGTCTAAGCCCCTG-CCGGACCGAGGGTTGTGGCAGCAGGA-CAG-C
* * * * * * *
31615364 AGCATGCAG-GGGAGACCGGG-TGAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGC
63 AGCACGCAGAGGGGGACCGGGCCG-ATCCCCGGCTTGCGCATTATGCCTCTCCGG-CGGCTCAGC
* * * **
31615427 ACCCGTACGGC-CGTTTCGTGGGTTGGTTTA-G
126 GCCCGCACGGCTCGTTTCATGGGTTGACTTAGG
* * * * * *
31615458 CATAGGGAGTTCAGT-CCATGTCTAAGCCCCTGTCGGACCTACGGTTGTGGCAGCGGGACAGGCA
1 CATACGGAGTTCATTCCCA-GTCTAAGCCCCTGCCGGACCGAGGGTTGTGGCAGCAGGACA-GCA
* * * **
31615522 GCACACAGAGGGGGACCGTGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAATGC
64 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGC-GGCTCAGCGC
* *
31615587 CCGCA-TGCTCGGTTCATGGGTTGACTTAGG
128 CCGCACGGCTCGTTTCATGGGTTGACTTAGG
31615617 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
31615643 ATCGAATTGG
Statistics
Matches: 385, Mismatches: 96, Indels: 39
0.74 0.18 0.08
Matches are distributed among these distances:
156 4 0.01
157 52 0.14
158 183 0.48
159 140 0.36
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGCCCCTGCCGGACCGAGGGTTGTGGCAGCAGGACAGCAGC
ACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGCTCAGCGCCCG
CACGGCTCGTTTCATGGGTTGACTTAGG
Found at i:31615591 original size:316 final size:314
Alignment explanation
Indices: 31614984--31616803 Score: 1047
Period size: 316 Copynumber: 5.6 Consensus size: 314
31614974 CTAGTCTAAA
* * * *
31614984 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACTGAGGG-TACGGTAGCAGGATCGACAG
* * * * * * *
31615049 CACGCAAGGGGGACCAGGTCAATCCCCGGCTTGCGCATTCTGTCTCTCCGACCGACTTAGCACCT
64 CACGC-AGGGGGACCGGGTGAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCC
*
31615114 GCACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
128 GTACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * ** **
31615179 TCGAGGGTTGTGGCAGTAGGACCAGCAGAACGTAGAGGGGGATTGGGCCGATCCCCGACTTGCGC
193 CCGACGGTTGTGGCAGCAGGACCAGCAGAACACAGAGGGGGACCGGGCCGATCCCCGACTTGCGC
* *
31615244 ATTAAGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
258 ATTAAGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCGGTTCATGGGTTGACTTAGG
* ** *
31615301 CATACGGAGTTCATTCCCAGTCTAAGGTCTGACCAAACCGAGGGATACGGTAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACTGAGGG-TACGGTAGCAGGATCGACAG
*
31615366 CATGCAGGGGAGACCGGGTGAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCC-AGCTGAGCACC
64 CACGCAGGGG-GACCGGGTGAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGA-CTGAGCACC
* * * *
31615430 CGTACGGCCGTTTCGTGGGTTGGTTTA-GCATAGGGAGTTCAGTCCATGTCTAAGCCCCTGTCGG
127 CGTACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * *
31615494 ACCTACGGTTGTGGCAGCGGGA-CAGGCAGCACACAGAGGGGGACCGTGCCGATCCCCGGCTTGC
192 ACCGACGGTTGTGGCAGCAGGACCA-GCAGAACACAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * * *
31615558 GCATTATGCCTCTTCGG-CTGGCTCAATGCCCGCATGCTCGGTTCATGGGTTGACTTAGG
256 GCATTAAGCCTCTCCGGTC-GGCTCAACGCCCGCACGCTCGGTTCATGGGTTGACTTAGG
** * *
31615617 CATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGATTGAGGGTCACGGTAGCAAGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACTGAGGGT-ACGGTAGCAGGATCGACAG
* * * ** * * *
31615682 CACGCAGGGGGGACCGGGTCG-GTCGTCGGCTTGCGCATTCTGCCTTTTTGGTCGACTGAGCGCT
64 CACGCA-GGGGGACCGGGT-GAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
* * * *
31615746 CGTA-TGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAG
127 CGTACGGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG--T---C-T---AAG
*
31615810 TTCTTTCCCAGACTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGACCAGCAACAGGATCAG
182 --C---CCCAG-C------CGGACC-GA-C---GGTTGTGGCAGCAGGACCAG---CA-GA--A-
* ** * ** ** * * *
31615875 TAGCACGCATGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGC
223 CA-CA-G-A--GGGGGACCGGGCCGATCCCCGACTTGCGCATTAAGCCTCTCCGGTCGGCTCAAC
* * * *
31615940 GCCCTCAAGC-CTGTTTCATGGGTTG-GTTAGG
283 GCCCGCACGCTC-GGTTCATGGGTTGACTTAGG
* * * ** * *
31615971 GATAGGGAGTTCAGT-CCATGTCTAAGCCCCTG-TCGGACCT-AGGGT--TGTAGCAGCGGGA-C
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATC-GACCGGA-CTGAGGGTACGGTAGCA---GGATC
* * ** * * * *
31616030 AGGCAACACGCAGAGGGGGACCGTGCCG-ATCC-CTGGCTTGCGCATTATGCCTCTCCGACTGGC
59 -GACAGCACGC--AGGGGGACCG-GGTGAATCCTC-GGCTTGCGCATTCTGCCTCTCCGGCCGAC
* * * * * * * * *
31616093 TCAGCGCCCGCAC-GCTCGTTTCATGGGTTGCCTTAGGCATACGAAGTTCATTCCAAGTCTAAGA
119 TGAGCACCCGTACGGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * * *** * * * * * * * *
31616157 TCAAACCGGACCAAGGGTCACGGTAGCAGGATC-GATAGCACACAG-GTGGGATCGGGTCGGTCC
183 CCCAGCCGGACCGACGGTTGTGGCAGCAGGACCAG-CAGAACACAGAGGGGGACCGGGCCGATCC
* * ** * * * * * * * * *
31616220 CCGGCTTGTGCATTCTGCCTCTTC-GTCCGACTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCT
247 CCGACTTGCGCATTAAGCCTCTCCGGT-CGGCTCAACGCCCGCACGCTCGGTTCATGGGTTGACT
31616284 TAGG
311 TAGG
* * * *
31616288 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTGCGATAGCAGGACCAGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGA-C-TGAG--G-G-TA-C--G----GTAG
* * * * * * *
31616353 CAGGATCGATAGCACACATGGAGGGATCGAGTCG-ATCCTCGACTTACGCATTCTGCCTCTCCGA
52 CAGGATCGACAGCACGCA-GG-GGGACCGGGT-GAATCCTCGGCTTGCGCATTCTGCCTCTCCGG
* * * *
31616417 CCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
114 CCGACTGAGCACCCGTACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * * * * *
31616482 AAGCCCCAACCGGACCGAGGGTTATGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGA
179 AAGCCCCAGCCGGACCGACGGTTGTGGCAGCAGGACCAGCAGAACACAGAGGGGGACCGGGCCGA
* ** * * * * * * ** *
31616547 TCCCCGGCTTATGCATTATGCCTCTCTGGTCAGCTCAGCCCCCGAACGCTCATTTCGTGGGTTGA
244 TCCCCGACTTGCGCATTAAGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCGGTTCATGGGTTGA
* *
31616612 CTTCGA
309 CTTAGG
* * * * *
31616618 CATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATCGAAAA
1 CATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACTGAGGG-TACGGTAGCAGGATCGACAG
* * * * * * * * * * *
31616683 TACGTAAAGGGGGACCAGGTCAGTCCCCAGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCC
64 CACG--CAGGGGGACCGGGTGAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
* * * *
31616748 CGCA-TGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 CGTACGGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
31616804 ATACGGAGTT
Statistics
Matches: 1175, Mismatches: 230, Indels: 195
0.73 0.14 0.12
Matches are distributed among these distances:
315 7 0.01
316 321 0.27
317 182 0.15
318 112 0.10
319 5 0.00
320 2 0.00
321 3 0.00
322 4 0.00
323 3 0.00
324 1 0.00
325 3 0.00
326 6 0.01
327 1 0.00
328 7 0.01
329 148 0.13
330 103 0.09
331 6 0.01
332 5 0.00
333 1 0.00
334 6 0.01
338 6 0.01
339 1 0.00
340 2 0.00
341 2 0.00
343 15 0.01
344 2 0.00
346 5 0.00
347 1 0.00
349 2 0.00
350 2 0.00
351 8 0.01
352 1 0.00
353 6 0.01
354 45 0.04
355 147 0.13
356 4 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (314 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACTGAGGGTACGGTAGCAGGATCGACAGCA
CGCAGGGGGACCGGGTGAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGTA
CGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG
ACGGTTGTGGCAGCAGGACCAGCAGAACACAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
AAGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCGGTTCATGGGTTGACTTAGG
Found at i:31615825 original size:26 final size:26
Alignment explanation
Indices: 31615774--31615826 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31615764 GTTGGCTTAG
*
31615774 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGACTAA
*
31615800 GCATACGAAGTTCTTTCCCA-GACTAA
1 GCATACGAAGTTCATT-CCATGACTAA
31615826 G
1 G
31615827 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGACTAA
Found at i:31616500 original size:171 final size:170
Alignment explanation
Indices: 31616181--31616500 Score: 435
Period size: 171 Copynumber: 1.9 Consensus size: 170
31616171 GGGTCACGGT
* * * * ** * *
31616181 AGCAGGATCGATAGCACACAGGTGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTTCGT
1 AGCAGGATCGATAGCACACAGGAGGGATCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGA
* *
31616246 CCGACTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
66 CCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
* **
31616311 AAGATCGGACCAGACCGAGAGTTGCGATAGCAGGACCAGC
131 AAGACCCAACCAGACCGAGAGTTGCGATAGCAGGACCAGC
*
31616351 AGCAGGATCGATAGCACACATGGAGGGATCGAGTCGATCCTCGACTTACGCATTCTGCCTCTCCG
1 AGCAGGATCGATAGCACACA-GGAGGGATCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCG
* * * *
31616416 ACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGT
65 ACCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-GT
* *
31616480 CTAAGCCCCAACCGGACCGAG
129 CTAAGACCCAACCAGACCGAG
31616501 GGTTATGGCA
Statistics
Matches: 128, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
170 23 0.18
171 105 0.82
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (170 bp):
AGCAGGATCGATAGCACACAGGAGGGATCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGA
CCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
AAGACCCAACCAGACCGAGAGTTGCGATAGCAGGACCAGC
Found at i:31616788 original size:318 final size:324
Alignment explanation
Indices: 31616046--31616803 Score: 867
Period size: 329 Copynumber: 2.3 Consensus size: 324
31616036 CACGCAGAGG
* * * * *
31616046 GGGACCGTGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCG
1 GGGACCGAGTCGATCCC-CGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCG
* * * **
31616111 TTTCATGGGTTGCCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCAAACCGGACCAAGGGTC
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAGGGTC
* * * * * * * *
31616176 ACGGTAGCAGGATCGATAGCACACAGGTGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTC
130 ACGGCAGCAGGACCGATAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTATGCATTATGCCTC
* * * * * * *
31616241 TTCGTCCGACTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCC
195 TTCGTCAGACTCAGCCCCCACACGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCC
31616306 AGTCTAAGATCGGACCAGACCGAGAGTTGCGATAGCAGGACCAGCAGCAGGATCGATAGCACACA
260 AGTCTAAGATCGGACCAGACCGAGAGTTGCGATAGCAGGACCAGCA-CA-GA-C-ATAGCACACA
31616371 TGGA
321 TGGA
* * * * *
31616375 GGGATCGAGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCG
1 GGGACCGAGTCGATCCCCG-CTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCG
* * * * *
31616440 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAGGGTC
* * * *
31616505 ATGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTATGCATTATGCCT
130 ACGGCAGCAGGACCGATAGCACACAG-GGGGGACCGGGCCGATCCCCGGCTTATGCATTATGCCT
* *
31616570 CTCTGGTCAG-CTCAGCCCCCGA-ACGCTCATTTCGTGGGTTGACTTCGACATACGAAGTTCATT
194 CT-TCGTCAGACTCAGCCCCC-ACACGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATT
* * * * * * *
31616633 CCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATC-G-A-A-A-ATACGTA-A-A
257 CCCAGTCTAAGATCGGACCAGACCGAGAGTTGCGATAGCAGGACCAGCACAGACATA-GCACACA
31616691 -GG-
321 TGGA
*
31616693 GGGACC-AGGTC-AGTCCCCAGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCATGCT
1 GGGACCGA-GTCGA-TCCCC-GCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCT
31616756 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
63 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31616804 ATACGGAGTT
Statistics
Matches: 365, Mismatches: 56, Indels: 27
0.81 0.12 0.06
Matches are distributed among these distances:
317 2 0.01
318 97 0.27
319 3 0.01
320 1 0.00
321 4 0.01
322 2 0.01
324 1 0.00
326 1 0.00
328 2 0.01
329 129 0.35
330 117 0.32
331 6 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (324 bp):
GGGACCGAGTCGATCCCCGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAGGGTCA
CGGCAGCAGGACCGATAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTATGCATTATGCCTCT
TCGTCAGACTCAGCCCCCACACGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCA
GTCTAAGATCGGACCAGACCGAGAGTTGCGATAGCAGGACCAGCACAGACATAGCACACATGGA
Found at i:31616826 original size:26 final size:26
Alignment explanation
Indices: 31616776--31616828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31616766 GTTGGCTTAG
*
31616776 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
31616802 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
31616828 G
1 G
31616829 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:31617020 original size:26 final size:26
Alignment explanation
Indices: 31616984--31617036 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31616974 GTTGACTTAG
31616984 GCATACGGAGTGCA-TCCTCAGTCTAA
1 GCATACGGAGTGCATTCC-CAGTCTAA
*
31617010 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
31617036 G
1 G
31617037 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:31617363 original size:26 final size:26
Alignment explanation
Indices: 31617327--31617379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31617317 GTTGACTTAG
31617327 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31617353 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31617379 G
1 G
31617380 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31617570 original size:343 final size:343
Alignment explanation
Indices: 31616965--31617684 Score: 993
Period size: 343 Copynumber: 2.1 Consensus size: 343
31616955 TCGCACTCTT
* *
31616965 GTTTCGTGGGTTGACTTAGGCATACGGAGTGCATCCTCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
31617030 GTCTAAGATCTAACCAGACCGAGGGTTGCTGAAGCAGGATCGGCAGCACACAGGGGGGACCGGGC
66 GTCTAAGATCTAACCAGACCGAGGGTTGCTGAAGCAGGATCGACAACACACAGGAGGGACCGGGC
* * *
31617095 TAATCGCTGACTTGCGCATTCTACATCTTCGATCGACTGAGCGCCCACACGCCTGTTTCGTGGGT
131 TAATCGCTGACTTGCGCATTCTACATCTCCGACCGACTGAACGCCCACACGCCTGTTTCGTGGGT
* *
31617160 TGGCTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGTGG
196 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTAATGGCAGTGG
* * *
31617225 GACCTG-CAGCACACAGAGGGGGACCGGGCCGATCCCCGTCTTGTGCATTCTGTC-TCTTCAGTC
261 GACC-GACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATG-CATCTTCAGTC
* *** *
31617288 GACTGAGCGCCCGTGTGCTC
324 GACTCAGCGCCCGCACGCCC
*
31617308 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
31617373 GTCTAAGATC-AGACCGGACTGAGGGTTGC-GACAGCAGGATCGACAACACGCAGGAGGGACCGG
66 GTCTAAGATCTA-ACCAGACCGAGGGTTGCTGA-AGCAGGATCGACAACACACAGGAGGGACCGG
* * * * *
31617436 GCTGATCTCTGGCTTGCGCATTCTACCTCTCCGACCGACTGAATGCCCACACG-CTCGTTTCGTG
129 GCTAATCGCTGACTTGCGCATTCTACATCTCCGACCGACTGAACGCCCACACGCCT-GTTTCGTG
**
31617500 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTACTCCCCAGTCGGACCGAGGG-AAGTGGCA
193 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTAA-TGGCA
** * * *
31617564 GTGGGACCGACAGCATGCAGAGGGGGACCGAGCCGATCCTCGGCTTGTGCATTATGCATTTTCGG
257 GTGGGACCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCATCTTCAG
*
31617629 TCGGCTCAGCGCCCGCACGCCC
322 TCGACTCAGCGCCCGCACGCCC
* ** *
31617651 ATTTCGTGGGTTGGGTTAGGCATAGGGAGTTCAT
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
31617685 TCCATGTCTA
Statistics
Matches: 332, Mismatches: 39, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
342 8 0.02
343 324 0.98
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (343 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCTAACCAGACCGAGGGTTGCTGAAGCAGGATCGACAACACACAGGAGGGACCGGGC
TAATCGCTGACTTGCGCATTCTACATCTCCGACCGACTGAACGCCCACACGCCTGTTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTAATGGCAGTGG
GACCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCATCTTCAGTCGA
CTCAGCGCCCGCACGCCC
Found at i:31617869 original size:159 final size:159
Alignment explanation
Indices: 31617353--31618013 Score: 520
Period size: 159 Copynumber: 4.2 Consensus size: 159
31617343 CCCAGTCTAA
* * * * * * *
31617353 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATAGGGAGTTCATT-CCATGTCTAAGATCCGACCGGACCGAGGGTTGTGGCAGCGGGACCGAC
* * * * * ** * ***
31617417 AACACGCAG-GAGGGACCGGGCTGATCTCTGGCTTGCGCATTCTACCTCTCCGACCGACTGAATG
65 AGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTTCGTG
31617481 CCC-ACACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGA-ACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** *
31617511 GCATAGGGAGTTCATTCCATGTCT-A-CTCCCCAGTCGGACCGAGGGAAGTGGCAGTGGGACCGA
1 GCATAGGGAGTTCATTCCATGTCTAAGAT-CCGA-CCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * * *
31617574 CAGCATGCAGAGGGGGACCGAGCCGAT-CCTCGGCTTGTGCATTATGCATTTTCGGTCGGC-TCA
64 CAGCACGCAGAGGGGGACCGGGCTGATCCCT-GGCTTGCGCATTATGCCTCTCCGGTCGGCTTC-
* * * * *
31617637 GCGCCCGCACGCCCATTTCGTGGGTTGGGTTAG
127 GTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
** * *
31617670 GCATAGGGAGTTCATTCCATGTCTAAGGCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGATA
1 GCATAGGGAGTTCATTCCATGTCTAAGATCCGACCGGACCGAGGGTTGTGGCAGCGGGACCGACA
* *
31617735 GCACGTAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGGCTTCGTGC
66 GCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTTCGTGC
* * *
31617800 CCGAATGCTCGTTTCGTGCGTTGACTTAG
131 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** *
31617829 GCATACGGAGTTCATTCCCA-GTTTAAGATTGGACCAGACCGAGGG-TGATGGCAGCAAGATCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGATCCGACCGGACCGAGGGTTG-TGGCAGCGGGACCGA
* * * * * * * * * *
31617892 CAGCATGTAG-GGGGGA-AGAGGTTGGTCCCCGGCTT-CTGCATTCTGCCTTTTCGATCGG-TTG
64 CAGCACGCAGAGGGGGACCG-GGCTGATCCCTGGCTTGC-GCATTATGCCTCTCCGGTCGGCTT-
* * * *
31617953 AGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
126 CGTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
31617987 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATAGGGAGTTCATTCCATGTCTAAG
31618014 CATACGAAGT
Statistics
Matches: 395, Mismatches: 91, Indels: 34
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 13 0.03
158 136 0.34
159 233 0.59
160 12 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATAGGGAGTTCATTCCATGTCTAAGATCCGACCGGACCGAGGGTTGTGGCAGCGGGACCGACA
GCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTTCGTGC
CCGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31618024 original size:26 final size:26
Alignment explanation
Indices: 31617987--31618038 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31617977 GTTGGCTTAG
*
31617987 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
31618013 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
31618039 TATTGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:31618854 original size:159 final size:159
Alignment explanation
Indices: 31618653--31619215 Score: 628
Period size: 159 Copynumber: 3.5 Consensus size: 159
31618643 CCCAGCTTAT
* * * ** * * * *
31618653 GCATTTTGCCTCTTCGGTCGGCTGAGTTCCCGCACGCTCGTTTCGTGGGTTGGCGTAGGGATAGG
1 GCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
31618718 GAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGTAGTGGGACCGGCAACACGTA
66 GAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGTAGTAGGACCGACAGCACGTA
*
31618783 GAGGGGGACCGGGTCGATCCCCGGCTTAC
131 GAGGGGGACCGGGTCGATCCCCGGCTTGC
* ** * *
31618812 GCATTATGCCCCTTCAACCGGCTCAGCGCCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATAGG
1 GCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
31618877 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCA
66 GAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGTAGTAGGACCGACAGCACGTA
*
31618942 GAGGGGGACCGGGCCGATCCCCGGCTTGC
131 GAGGGGGACCGGGTCGATCCCCGGCTTGC
* * * ** * * * *
31618971 GCATTATGCCTATTCGGCTGGCTCAACTTCCGTACT-CTCATTTCGTGGGTTGACTTATGCATAC
1 GCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCA-TGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* ** * * * * *
31619035 GGAGTTAATTCCCA-GTCTAAG-ATCGGACCGAACTGAGGGTTGTGGTAGTAGGATCAACAGCAC
65 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGGTAGTAGGACCGACAGCAC
* * * *
31619098 GTAGGGGGGGACCAGGTCAATCCCCGACTTGC
128 GTAGAGGGGGACCGGGTCGATCCCCGGCTTGC
* * * * * * *
31619130 GCATTCTACCTCTTCGGCCAGTTGAGTGCCCGCAGGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
31619195 GAGTTCATTCCATGTCTAAGC
66 GAGTTCATTCCATGTCTAAGC
31619216 ATACGGAGTT
Statistics
Matches: 331, Mismatches: 67, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
158 5 0.02
159 322 0.97
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGTAGTAGGACCGACAGCACGTA
GAGGGGGACCGGGTCGATCCCCGGCTTGC
Found at i:31619224 original size:26 final size:26
Alignment explanation
Indices: 31619188--31619240 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31619178 GTTGGCTTAG
31619188 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31619214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31619240 G
1 G
31619241 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31619956 original size:26 final size:26
Alignment explanation
Indices: 31619920--31619972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31619910 GTTGACTTAG
*
31619920 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
31619946 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
31619972 G
1 G
31619973 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:31620262 original size:159 final size:158
Alignment explanation
Indices: 31620075--31620486 Score: 420
Period size: 159 Copynumber: 2.6 Consensus size: 158
31620065 GGCTGAGTGC
* * * * * *
31620075 CCGCACACCCATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCAATCTATGTCTAAGCCCTAGCTG
1 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGCTG
* * * *
31620140 GACCGAGGGTTGTGGCAGTAGGACCGGCAGCACGT-AGAGGGGGATCGAGTCAATCCCCGATTTG
65 GATCGAGGGTTGTGGCAGTAGGACCGGCAGCACGTAAG-GGGGGACCGAGCCAATCCCCGACTTG
* **
31620204 CGCATTATGTCTCCCCGATCGACTCAACTT
129 CGCATTATGCCTCCCCGATCGACTCAACGA
* * ** * *
31620234 CCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGATT
1 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG-CT
* * * *
31620298 GGATCGAGGG-T-T-GCAGTAGCAGATTCGACAGCACGTAAGGGGGGACCGAGCCGATCCCTGAC
64 GGATCGAGGGTTGTGGCAGTAG--GA-CCGGCAGCACGTAAGGGGGGACCGAGCCAATCCCCGAC
* * * * * * *
31620360 TTGCGCATTCTGCCTCTCTGGTCGATTGAGCGA
126 TTGCGCATTATGCCTCCCCGATCGACTCAACGA
* *
31620393 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGCAGTTCATTCCATGACTAAGCCCCAGCTG
1 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCTG
*
31620458 GATCGAGGGTTGTGGCAGCAGGACCGGCA
65 GATCGAGGGTTGTGGCAGTAGGACCGGCA
31620487 ACGGGATCGG
Statistics
Matches: 201, Mismatches: 41, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
156 7 0.03
157 1 0.00
158 7 0.03
159 170 0.85
160 9 0.04
161 1 0.00
162 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCTGG
ATCGAGGGTTGTGGCAGTAGGACCGGCAGCACGTAAGGGGGGACCGAGCCAATCCCCGACTTGCG
CATTATGCCTCCCCGATCGACTCAACGA
Found at i:31621119 original size:158 final size:157
Alignment explanation
Indices: 31620632--31621135 Score: 511
Period size: 159 Copynumber: 3.2 Consensus size: 157
31620622 CCCAATCTAA
** * * **
31620632 GCATACAGAGTTCATTCCCAACCTAAGATCGCATTGGACTGAGGGTTGCGGCAATAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCG-ATTGGAATGAGGGTTGTGGCAGCAGGATCGGCA
** *
31620697 GCACGC-AGGGGGGATCGGGCCGATCTCTAGCTTGTGCATTTTGCCTCTCC-GCTCGGCTGAGCG
65 GCACGCAAGGGGGGATCGGGCCGATC-CCCGCTTGTGCATTATGCCTCTCCGGC-CGGCTGAGCG
* *
31620760 CCCGCACGC-CTGTTTCATGGGTTGGCTTAG
128 CCCGTACGCTC-GTTTCGTGGGTTGGCTTAG
** * ** *
31620790 GCATAGGGAGTTCATT-CCATGTCTAAGCGTC-AGTCAGACA-AAGGGTTGTGGCAGC-GG-TAC
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCGA-TTGGA-ATGAGGGTTGTGGCAGCAGGAT-C
* * ** *
31620850 TGGCAGCACGCAAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGATCGGCTC
61 -GGCAGCACGCAAGGGGGGATCGGGCCGATCCCC-GCTTGTGCATTATGCCTCTCCGGCCGGCTG
* * *
31620915 AGCGCCCGTACGCTTGTTTCGTGAGTTGGCTTAT
124 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
31620949 ACATACAGAGTTCATTCCCAGTCTAAGATCTGATTGGAATGAGGGTTGTGGTGGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATC-GATTGGAATGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * *
31621014 GCACGCAAGGGGGGACCGGGCCGATCCCCGATTGCGCATTCTACCTCTCCGGCCGGTTGAGCGCC
65 GCACGCAAGGGGGGATCGGGCCGATCCCCGCTTGTGCATTATGCCTCTCCGGCCGGCTGAGCGCC
*
31621079 TGTACGCTCGTTTCGTGGGTTGGCTTAG
130 CGTACGCTCGTTTCGTGGGTTGGCTTAG
*
31621107 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGAT
31621136 TTTGAGCCAT
Statistics
Matches: 278, Mismatches: 52, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
156 1 0.00
157 7 0.03
158 125 0.45
159 137 0.49
160 7 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGATTGGAATGAGGGTTGTGGCAGCAGGATCGGCAG
CACGCAAGGGGGGATCGGGCCGATCCCCGCTTGTGCATTATGCCTCTCCGGCCGGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31621834 original size:26 final size:26
Alignment explanation
Indices: 31621797--31621849 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31621787 GTTGACTTAG
*
31621797 GCATACGAAGTTCA-TCCCCAGTTTAA
1 GCATACGAAGTTCACT-CCCAGTCTAA
*
31621823 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
31621849 G
1 G
31621850 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:31622206 original size:25 final size:26
Alignment explanation
Indices: 31622177--31622228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31622167 GTTGACTTAT
31622177 GCATA-GGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
31622202 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
31622228 G
1 G
31622229 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:31622489 original size:159 final size:157
Alignment explanation
Indices: 31622243--31622703 Score: 511
Period size: 159 Copynumber: 2.9 Consensus size: 157
31622233 GACTGGACTG
* * * * * *
31622243 AGGGTTGCGGTAGTAGGATCGACAGCATGCAGGGGGACCGGGTTGATCCCTGACTTGTGCATTCT
1 AGGGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGATCGGGTCGATCCCCG-CTTGTGCATTCT
* * *
31622308 ACCTCTCCGATCGGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
65 GCCTCTCCGATCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
*
31622373 TTCCATGTCTAAGCCCCAG-CCGGA-CTA
130 TTCCATGTCTAAGCACCAGACCGGATC-A
** ** *
31622400 AGGGTTGTGGCAGTGGGA-CTGGCAGCATGCAGAGGGGGATCGGGTCGATCCCCGTCTTGTGCAT
1 AGGGTTGCAGCAGCAGGATC-GACAGCATGC--AGGGGGATCGGGTCGATCCCCG-CTTGTGCAT
* * ** * * * *
31622464 TATGCCTCTCCGATCGGCTCAGCGCCCGCATACTTGTTTCGTGGGTTGCCTTAGGCATATGGAGT
62 TCTGCCTCTCCGATCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* *
31622529 TCATTCCCA-GTCTAA-CATCAGACCGGATCG
127 TCATT-CCATGTCTAAGCACCAGACCGGATCA
* * *
31622559 AGGGTTGCAGCAGCAGGATCGACAGCATGTAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCT
1 AGGGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGATCGGGTCGATCCCC-GCTTGTGCATTCT
* * *
31622624 GCCTCTCCGGTCGACTGAA-TGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
65 GCCTCTCCGATCGGCT-AAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
*
31622688 ATTCAATGTCTAAGCA
129 ATTCCATGTCTAAGCA
31622704 TACGGAGTTC
Statistics
Matches: 252, Mismatches: 41, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
156 3 0.01
157 115 0.46
158 8 0.03
159 121 0.48
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
AGGGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGATCGGGTCGATCCCCGCTTGTGCATTCTG
CCTCTCCGATCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCACCAGACCGGATCA
Found at i:31622699 original size:157 final size:156
Alignment explanation
Indices: 31622202--31622700 Score: 542
Period size: 157 Copynumber: 3.2 Consensus size: 156
31622192 CCTAGTCTAA
* * * * *
31622202 GCATACGGTGTTCATTCC-TAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAACATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGAC
* * * *
31622266 AGCATGCAGGGGGACCGGGTTGATCCCTGACTTGTGCATTCTACCTCTCCGATCGGCTAAGCGCC
65 AGCATGCAGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTAA-CGCC
*
31622331 CGCACGCCCGTTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
31622359 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTAAGGGTTGTGGCAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAA-CATCAGACCGGACTGAGGGTTGCGGCAGTAGGATC-GA
* * *
31622422 CAGCATGCAGAGGGGGATCGGGTCGATCCCCGTCTTGTGCATTATGCCTCTCCGATCGGCTCAGC
64 CAGCATGC--AGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCT-AAC
** * * *
31622487 GCCCGCATACTTGTTTCGTGGGTTGCCTTAG
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
31622518 GCATATGGAGTTCATTCCCA-GTCTAACATCAGACCGGA-TCGAGGGTTGCAGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAACATCAGACCGGACT-GAGGGTTGCGGCAGTAGGATCGA
* * * * * *
31622581 CAGCATGTAGGGGGATCGGGCCGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGTCGACTGAATG
64 CAGCATGCAGGGGGATCGGGTCGATCCCCGA-CTTGTGCATTCTGCCTCTCCGATCGGCT-AACG
31622645 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
31622675 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31622701 GCATACGGAG
Statistics
Matches: 279, Mismatches: 51, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 144 0.52
158 8 0.03
159 119 0.43
160 5 0.02
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAACATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGACA
GCATGCAGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTAACGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:31623432 original size:26 final size:26
Alignment explanation
Indices: 31623396--31623448 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31623386 GTTGACTTAG
*
31623396 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31623422 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31623448 G
1 G
31623449 ATTGGGCTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31624390 original size:158 final size:159
Alignment explanation
Indices: 31623999--31624394 Score: 399
Period size: 159 Copynumber: 2.5 Consensus size: 159
31623989 AGGTTTTCTG
* * *
31623999 CTCTCCGATCGGTTGAGCGCCTGCACGCTCGTTTCGTTGG-CTGGCTTAGGCATAGGGAGTTCAT
1 CTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTC-GGCTTAGGCATACGGAGTTCAT
* * * * ** * *
31624063 TCCATGTCTAAGCTTCAGTCAGACCGAGGGTTGTGGCAGCGGGACTGGTAGCATGCAGAGAGGGA
65 TCCATGTCTAAGCATCAGACAGACCGAGGGTTGAGGCAGCAGGACTGACAACACGCAGAGAGGGA
* ** *
31624128 TCGGGCTGATCCTTGACTTACGCATTATGC
130 CCGGGCTGATCCCCGACTTACGCATTATAC
* * * * * *
31624158 CTCTCCGGTCGGTTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
1 CTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTCGGCTTAGGCATACGGAGTTCATT
* * * *
31624223 CCCA-ATCTAAG-ATCGGACTAGACCGAGTGTTGAGGCAGCAGGA-TCGACAACACGCAG-GGGG
66 -CCATGTCTAAGCATCAGAC-AGACCGAGGGTTGAGGCAGCAGGACT-GACAACACGCAGAGAGG
* ** * *
31624284 GACCGGG-TCGGTCCCCGACTTGTGCTTTCTAC
128 GACCGGGCT-GATCCCCGACTTACGCATTATAC
* * * *
31624316 CTCTCCGACCGGTTGAGCGCCCGCACGTTCGTTTCATGGGTCGGCTTAGGCATACGAAGTTCATT
1 CTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTCGGCTTAGGCATACGGAGTTCATT
31624381 CCATGTCTAAGCAT
66 CCATGTCTAAGCAT
31624395 ATGGAGTTCA
Statistics
Matches: 189, Mismatches: 41, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 90 0.48
159 92 0.49
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
CTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTCGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCATCAGACAGACCGAGGGTTGAGGCAGCAGGACTGACAACACGCAGAGAGGGAC
CGGGCTGATCCCCGACTTACGCATTATAC
Found at i:31624395 original size:26 final size:26
Alignment explanation
Indices: 31624365--31624417 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31624355 GTCGGCTTAG
31624365 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
31624391 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31624417 G
1 G
31624418 ATTGAACTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31624598 original size:26 final size:26
Alignment explanation
Indices: 31624562--31624614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31624552 GTTGACTTAG
*
31624562 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
**
31624588 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
31624614 G
1 G
31624615 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAACCCCAGTCTAA
Found at i:31624933 original size:26 final size:26
Alignment explanation
Indices: 31624904--31624956 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31624894 GTTGACTTAG
31624904 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31624930 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31624956 G
1 G
31624957 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.