Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 344 of 402
Found at i:31625505 original size:26 final size:26
Alignment explanation
Indices: 31625468--31625520 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31625458 GTTAACATAG
31625468 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
31625494 GCATAC-AGAGTTCATTCCCTGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
31625520 G
1 G
31625521 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31626024 original size:26 final size:26
Alignment explanation
Indices: 31625994--31626046 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31625984 GTTGACTTAG
31625994 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
31626020 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31626046 G
1 G
31626047 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31626542 original size:26 final size:26
Alignment explanation
Indices: 31626490--31626542 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31626480 GTTGGCTTAG
*
31626490 GCATACGAAGTTCATTCCATGTGTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
31626516 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
31626542 G
1 G
31626543 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:31626736 original size:26 final size:26
Alignment explanation
Indices: 31626699--31626751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31626689 GTTGACTTAG
*
31626699 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31626725 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31626751 G
1 G
31626752 ATTGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31626922 original size:26 final size:26
Alignment explanation
Indices: 31626883--31626935 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31626873 GTTGGCTTAG
31626883 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
31626909 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31626935 G
1 G
31626936 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31627635 original size:26 final size:26
Alignment explanation
Indices: 31627605--31627657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31627595 GTAGACTTAG
31627605 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31627631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31627657 G
1 G
31627658 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31627984 original size:26 final size:26
Alignment explanation
Indices: 31627948--31628000 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31627938 GTTGGCTTAG
31627948 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31627974 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31628000 G
1 G
31628001 AGTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31628598 original size:157 final size:160
Alignment explanation
Indices: 31628245--31628626 Score: 427
Period size: 159 Copynumber: 2.4 Consensus size: 160
31628235 TCTCCGGTCA
* * *
31628245 GCTGAGCGCCCGCACGCTCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAA
* * * * * *
31628309 GCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATC
66 GCCCCAGCCAGACCAAGGGTTGAGGCAGCAGGACCGACAACACACAGAGGGGGATCGGGCCGATC
* **
31628374 CCCGACTTGCGCATTATGCCTCTTCGGTCG
131 CCCGACTTGCGCATTATACCTCTTCGACCG
* * *
31628404 GCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAA
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAA
** * * * * *
31628468 G-ATCGGACTAGACCAAGGGTTGAGGCAGCAGGATCGACAACACATAG-GGGGGATCGGGTC-AT
66 GCCCCAG-CCAGACCAAGGGTTGAGGCAGCAGGACCGACAACACACAGAGGGGGATCGGGCCGAT
* * *
31628530 CCCCGGCTTGCGCCTTCTACCTC-TCTGACCG
130 CCCCGACTTGCGCATTATACCTCTTC-GACCG
** * * *
31628561 GCTGAGCGCCCGCACATTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAA
31628625 GC
66 GC
31628627 ATATGGAGTT
Statistics
Matches: 185, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
156 5 0.03
157 77 0.42
158 14 0.08
159 86 0.46
160 3 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAA
GCCCCAGCCAGACCAAGGGTTGAGGCAGCAGGACCGACAACACACAGAGGGGGATCGGGCCGATC
CCCGACTTGCGCATTATACCTCTTCGACCG
Found at i:31628629 original size:26 final size:26
Alignment explanation
Indices: 31628599--31628651 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31628589 GTTGGCTTAG
31628599 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
31628625 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31628651 G
1 G
31628652 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31629021 original size:26 final size:26
Alignment explanation
Indices: 31628992--31629044 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31628982 GTTGGCTTAG
31628992 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31629018 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31629044 G
1 G
31629045 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31630164 original size:158 final size:156
Alignment explanation
Indices: 31629649--31630187 Score: 546
Period size: 158 Copynumber: 3.4 Consensus size: 156
31629639 CGATCCCCGG
*
31629649 CTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* * * * * * *
31629713 ATCAAACTGGACTGAGGGTTGCGACAGCAACATCGATAGCACGCAGGGGGGACCTGGCCGATCCC
65 ATCAGACCGGACTGAGGGTTGCG-CAGTAAGATTGATAGCACGCAAGGGGGACCTGGTCGATCCC
* *
31629778 TGACTTACGCATTCTACCTCTCCGGCTGG
129 -GACTTACGCATTCTACCTCTCCGGCCGA
* * * * * *
31629807 CTGAGTGCCCTCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-
** * ** * * * *
31629872 CCCAG-CCGGACTGAGGGTTGTGGCAGTGGGACTGGTAGCATGCAGAGGGGGACCTAGTCGATCC
65 ATCAGACCGGACTGAGGGTTG-CGCAGTAAGATTGATAGCACGCA-AGGGGGACCTGGTCGATCC
* * * * *
31629936 CTAGCTTGCGCATTATGCCTCTCTGGCC-A
128 CGA-CTTACGCATTCTACCTCTCCGGCCGA
* * * *
31629965 GCTCAGCGCCCGAACACTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCA-GTCTAA
1 -CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAA
* * * * * * *
31630029 GATCAGACCAGACCGAGGGTTACAGTAGTAAGATTGATAGCACGCAAGGGGGATCGGGTCGGTCT
64 GATCAGACCGGACTGAGGGTTGC-GCAGTAAGATTGATAGCACGCAAGGGGGACCTGGTCGATC-
* * *
31630094 CGGACTTATGCATTCTACCTCTCCAGCCGA
127 CCGACTTACGCATTCTACCTCTCCGGCCGA
*
31630124 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
31630188 CATATGGAGT
Statistics
Matches: 300, Mismatches: 69, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 171 0.57
159 120 0.40
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGA
TCAGACCGGACTGAGGGTTGCGCAGTAAGATTGATAGCACGCAAGGGGGACCTGGTCGATCCCGA
CTTACGCATTCTACCTCTCCGGCCGA
Found at i:31630197 original size:26 final size:26
Alignment explanation
Indices: 31630161--31630213 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31630151 GTTGGCTTAG
31630161 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
31630187 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31630213 G
1 G
31630214 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31633279 original size:18 final size:18
Alignment explanation
Indices: 31633258--31633292 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31633248 TCTGTTAATT
*
31633258 TTATCTAATTCTTTTTTA
1 TTATCTAATTATTTTTTA
*
31633276 TTATCTGATTATTTTTT
1 TTATCTAATTATTTTTT
31633293 TATCCTATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.09, G:0.03, T:0.69
Consensus pattern (18 bp):
TTATCTAATTATTTTTTA
Found at i:31634286 original size:11 final size:11
Alignment explanation
Indices: 31634238--31634306 Score: 61
Period size: 11 Copynumber: 6.2 Consensus size: 11
31634228 TTAATATTCT
*
31634238 TTTTATCTTTA
1 TTTTATTTTTA
31634249 TTTTATTTTTA
1 TTTTATTTTTA
31634260 TTTT-TGTTTTA
1 TTTTAT-TTTTA
*
31634271 CTTTTCTTTATT-
1 -TTTTATTT-TTA
*
31634283 TTTTATGTTTA
1 TTTTATTTTTA
*
31634294 TTTTTTTTTTA
1 TTTTATTTTTA
31634305 TT
1 TT
31634307 ATTCTATTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
10 3 0.06
11 36 0.75
12 6 0.12
13 3 0.06
ACGTcount: A:0.13, C:0.04, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:31634301 original size:17 final size:16
Alignment explanation
Indices: 31634238--31634306 Score: 66
Period size: 17 Copynumber: 4.1 Consensus size: 16
31634228 TTAATATTCT
* *
31634238 TTTTATCTTTATTTTA
1 TTTTATTTTTTTTTTA
*
31634254 TTTTTATTTTTGTTTTA
1 -TTTTATTTTTTTTTTA
* *
31634271 CTTTTCTTTATTTTTTA
1 -TTTTATTTTTTTTTTA
31634288 TGTTTATTTTTTTTTTA
1 T-TTTATTTTTTTTTTA
31634305 TT
1 TT
31634307 ATTCTATTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
16 2 0.05
17 41 0.95
ACGTcount: A:0.13, C:0.04, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTATTTTTTTTTTA
Found at i:31634405 original size:56 final size:57
Alignment explanation
Indices: 31634351--31634485 Score: 184
Period size: 57 Copynumber: 2.3 Consensus size: 57
31634341 AAAAAAAAAT
*
31634351 ATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAA-ACAAATTTCAAAAAGG
1 ATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA-AAATTTCAAAAAGG
* *
31634408 GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGG
1 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC--AAAAAGG
*
31634467 GTTTTTGAGGAAAAGTTGA
1 ATTTTTGAGGAAAAGTTGA
31634486 CCAGCCCAAG
Statistics
Matches: 71, Mismatches: 3, Indels: 6
0.89 0.04 0.08
Matches are distributed among these distances:
57 43 0.61
58 2 0.03
59 26 0.37
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (57 bp):
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAGG
Found at i:31634405 original size:57 final size:57
Alignment explanation
Indices: 31634324--31634485 Score: 182
Period size: 57 Copynumber: 2.7 Consensus size: 57
31634314 TTTCTTTAAA
* * *
31634324 TAAAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAAATTT-C-AAAAAAGAT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
* *
31634386 TAAAAA-ACAAATTTCAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATA-AAATTTCAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
31634443 TAAAAATAAATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGA
1 TAAAAATAAAATTTC-AAAAAA-GATTTTTGAGGAAAAGTTGA
31634486 CCAGCCCAAG
Statistics
Matches: 89, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
57 38 0.43
58 11 0.12
59 26 0.29
60 2 0.02
61 6 0.07
62 6 0.07
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (57 bp):
TAAAAATAAAATTTCAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:31635508 original size:83 final size:82
Alignment explanation
Indices: 31635391--31635728 Score: 534
Period size: 83 Copynumber: 4.1 Consensus size: 82
31635381 ATGATTGTCA
* * *
31635391 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACATTTCAAAAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAG
31635456 TCGTGGTGCCTCTGTTTAG
64 TCGTGGTGCCTCTGTTTAG
*
31635475 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTACTTTTCCAAAGT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGT
31635540 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* *
31635558 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
31635622 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
*
31635640 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
1 AGGAGCAATTT-ACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
* * *
31635705 CGTTGAGCCTCCGTTTAG
65 CGTGGTGCCTCTGTTTAG
31635723 AGGAGC
1 AGGAGC
31635729 TTTGGTAAAA
Statistics
Matches: 238, Mismatches: 12, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
82 39 0.16
83 177 0.74
84 22 0.09
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (82 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:31635509 original size:41 final size:41
Alignment explanation
Indices: 31635391--31635728 Score: 534
Period size: 41 Copynumber: 8.1 Consensus size: 41
31635381 ATGATTGTCA
* *
31635391 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
31635433 AGGAGCAATTTACATTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
31635475 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
31635516 AGGAGAAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
*
31635558 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAA
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
*
31635599 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
31635640 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTT-ACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
31635682 AGGAGCAATTTACTTTTCAAAGTCGTTGAGCCTCCGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
31635723 AGGAGC
1 AGGAGC
31635729 TTTGGTAAAA
Statistics
Matches: 281, Mismatches: 12, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
41 145 0.52
42 136 0.48
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:31635741 original size:1 final size:1
Alignment explanation
Indices: 31635735--31635802 Score: 55
Period size: 1 Copynumber: 68.0 Consensus size: 1
31635725 GAGCTTTGGT
* * * * * * * * *
31635735 AAAAAAAAAAAAAACAAAAAAACAAAAAAAAAACACAAAAAAACACAAAAAAAATACAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
31635800 AAA
1 AAA
31635803 TGACAATGTT
Statistics
Matches: 49, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.87, C:0.12, G:0.00, T:0.01
Consensus pattern (1 bp):
A
Found at i:31635753 original size:10 final size:10
Alignment explanation
Indices: 31635735--31635797 Score: 76
Period size: 10 Copynumber: 6.2 Consensus size: 10
31635725 GAGCTTTGGT
31635735 AAAAA-AAAA
1 AAAAACAAAA
31635744 AAAAACAAAA
1 AAAAACAAAA
31635754 AAACAA-AAAA
1 AAA-AACAAAA
31635764 AAAACACAAAA
1 AAAA-ACAAAA
*
31635775 AAACACAAAA
1 AAAAACAAAA
31635785 AAAATACAAAA
1 AAAA-ACAAAA
31635796 AA
1 AA
31635798 CAAAATGACA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
9 6 0.13
10 24 0.51
11 17 0.36
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:31635755 original size:11 final size:11
Alignment explanation
Indices: 31635735--31635802 Score: 82
Period size: 11 Copynumber: 5.9 Consensus size: 11
31635725 GAGCTTTGGT
*
31635735 AAAAAAAAAAA
1 AAAAAAAAAAC
31635746 AAACAAAAAAAC
1 AAA-AAAAAAAC
31635758 AAAAAAAAAAC
1 AAAAAAAAAAC
*
31635769 ACAAAAAAACAC
1 A-AAAAAAAAAC
*
31635781 AAAAAAAATAC
1 AAAAAAAAAAC
31635792 AAAAAACAAAA
1 AAAAAA-AAAA
31635803 TGACAATGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
11 27 0.54
12 23 0.46
ACGTcount: A:0.87, C:0.12, G:0.00, T:0.01
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:31635763 original size:21 final size:21
Alignment explanation
Indices: 31635737--31635802 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 21
31635727 GCTTTGGTAA
31635737 AAAAAAAAAAAACAAAAAAAC
1 AAAAAAAAAAAACAAAAAAAC
*
31635758 AAAAAAAAAACACAAAAAAAC
1 AAAAAAAAAAAACAAAAAAAC
* *
31635779 ACAAAAAAAATAC-AAAAAAC
1 AAAAAAAAAAAACAAAAAAAC
31635799 AAAA
1 AAAA
31635803 TGACAATGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
20 10 0.24
21 31 0.76
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAAAACAAAAAAAC
Found at i:31636157 original size:18 final size:18
Alignment explanation
Indices: 31636123--31636156 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31636113 TCTGTTAATT
31636123 TTATCTAATTCTTTTTTA
1 TTATCTAATTCTTTTTTA
*
31636141 TTATCTGATT-TTTTTT
1 TTATCTAATTCTTTTTT
31636157 TCTTTTTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (18 bp):
TTATCTAATTCTTTTTTA
Found at i:31637073 original size:11 final size:11
Alignment explanation
Indices: 31637036--31637166 Score: 56
Period size: 11 Copynumber: 11.5 Consensus size: 11
31637026 TTTTTGAATT
31637036 TTTTTTATTTTCA
1 TTTTTTA-TTT-A
*
31637049 TTTCTTTGTTTA
1 TTT-TTTATTTA
31637061 TTTTTTATTTA
1 TTTTTTATTTA
**
31637072 TTAGATTAGGTTTA
1 TT-TTTTA--TTTA
**
31637086 TTTAATATTCT-
1 TTTTTTATT-TA
* *
31637097 TTTTATCTTTA
1 TTTTTTATTTA
31637108 TTTTATT-TTTA
1 TTTT-TTATTTA
31637119 TTTTTGT-TTTA
1 TTTTT-TATTTA
* *
31637130 -CTTTTCTTTA
1 TTTTTTATTTA
31637140 TTTTTTATTT-
1 TTTTTTATTTA
*
31637150 TTATTTATTTA
1 TTTTTTATTTA
31637161 TTTTTT
1 TTTTTT
31637167 TATTATTCTA
Statistics
Matches: 93, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
9 1 0.01
10 18 0.19
11 47 0.51
12 9 0.10
13 9 0.10
14 9 0.10
ACGTcount: A:0.17, C:0.05, G:0.04, T:0.75
Consensus pattern (11 bp):
TTTTTTATTTA
Found at i:31637117 original size:6 final size:6
Alignment explanation
Indices: 31637096--31637165 Score: 56
Period size: 6 Copynumber: 11.8 Consensus size: 6
31637086 TTTAATATTC
* * * * *
31637096 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTC TTTAT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
31637141 TTTTTA TTTTTA TTTATTTA TTTTT
1 TTTTTA TTTTTA -TT-TTTA TTTTT
31637166 TTATTATTCT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
5 12 0.24
6 31 0.61
7 4 0.08
8 4 0.08
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:31637118 original size:17 final size:17
Alignment explanation
Indices: 31637096--31637165 Score: 60
Period size: 17 Copynumber: 4.3 Consensus size: 17
31637086 TTTAATATTC
31637096 TTTTTATCTTTATTTTA
1 TTTTTATCTTTATTTTA
* *
31637113 TTTTTATTTTTGTTTTA
1 TTTTTATCTTTATTTTA
*
31637130 -CTTT-TCTTTATTTTTTA
1 TTTTTATCTTTA--TTTTA
31637147 TTTTTA--TTTA-TTTA
1 TTTTTATCTTTATTTTA
31637161 TTTTT
1 TTTTT
31637166 TTATTATTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
14 9 0.21
15 4 0.09
16 3 0.07
17 24 0.56
18 3 0.07
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.80
Consensus pattern (17 bp):
TTTTTATCTTTATTTTA
Found at i:31637122 original size:22 final size:22
Alignment explanation
Indices: 31637096--31637185 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 22
31637086 TTTAATATTC
*
31637096 TTTTTATCTTTATTTTATTT-T
1 TTTTTATTTTTATTTTATTTAT
*
31637117 TATTTT-TGTTTTACTTTTCTTTAT
1 T-TTTTAT-TTTTA-TTTTATTTAT
31637141 TTTTTATTTTTA-TTTATTTATT
1 TTTTTATTTTTATTTTATTTA-T
*
31637163 TTTTTATTATTCTATTTTCTTTA
1 TTTTTATT-TT-TATTTTATTTA
31637186 AATAAAAATC
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
21 9 0.16
22 17 0.30
23 18 0.32
24 5 0.09
25 7 0.12
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.78
Consensus pattern (22 bp):
TTTTTATTTTTATTTTATTTAT
Found at i:31637166 original size:16 final size:16
Alignment explanation
Indices: 31637131--31637185 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 16
31637121 TTTGTTTTAC
* *
31637131 TTTTCTTTATTTTTTAT
1 TTTTATTTATTTATT-T
31637148 TTTTATTTATTTATTT
1 TTTTATTTATTTATTT
31637164 TTTTA-TTATTCTATTT
1 TTTTATTTATT-TATTT
31637180 TCTTTA
1 T-TTTA
31637186 AATAAAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 5 0.15
16 12 0.35
17 17 0.50
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTTATTTATTT
Found at i:31637334 original size:116 final size:117
Alignment explanation
Indices: 31637188--31637418 Score: 342
Period size: 116 Copynumber: 2.0 Consensus size: 117
31637178 TTTCTTTAAA
*
31637188 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 TAAAAAT-AAAATTTCCAAAAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTT-A
* **
31637252 AAAATAAATTT-CAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
63 AAAATAAATTTCCAAAAAAGACTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
31637306 TAAAAAT-AAATTTTCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 TAAAAATAAAATTTCCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
31637370 ATAAATTTCCAAAAAATACTTTTGGGGAAAAGTTGAAAGTATCAATTTT
66 ATAAATTTCCAAAAAAGACTTTTGAGGAAAAGTTGAAAGTATCAATTTT
31637419 TTACACAAGA
Statistics
Matches: 103, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
115 12 0.12
116 83 0.81
117 1 0.01
118 7 0.07
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (117 bp):
TAAAAATAAAATTTCCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
ATAAATTTCCAAAAAAGACTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:31637356 original size:59 final size:58
Alignment explanation
Indices: 31637188--31637418 Score: 317
Period size: 57 Copynumber: 3.9 Consensus size: 58
31637178 TTTCTTTAAA
**
31637188 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTT-CAAAAAAAGGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
*
31637249 TAAAAAATAAATTTC--AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 T-AAAAATAAATTTCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
31637306 TAAAAATAAATTTTCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAA-TTTCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
31637365 TAAAAATAAATTTCCAAAAAA-TACTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 TAAAAATAAATTTCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
31637419 TTACACAAGA
Statistics
Matches: 157, Mismatches: 8, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
56 9 0.06
57 72 0.46
58 11 0.07
59 52 0.33
60 6 0.04
61 1 0.01
62 6 0.04
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (58 bp):
TAAAAATAAATTTCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:31642275 original size:26 final size:26
Alignment explanation
Indices: 31642246--31642298 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31642236 ATTGACTTAG
31642246 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
31642272 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31642298 G
1 G
31642299 ACTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31642770 original size:26 final size:26
Alignment explanation
Indices: 31642733--31642785 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31642723 GTTGGCTTAG
31642733 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
31642759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31642785 G
1 G
31642786 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31642959 original size:197 final size:187
Alignment explanation
Indices: 31642575--31643141 Score: 589
Period size: 197 Copynumber: 3.0 Consensus size: 187
31642565 GTTGACTTAG
* * * * * * *
31642575 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTG-TG--GCAGTAGGATTG
1 GCATACGGAGTGCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGTAGGATCG
* * * * * * ** *
31642637 ACAGCATGCAGGGGGGACCGGGCTGATCCTCGGCTTAAGCATTCTACCTCTCCGGTCGGTTGAGT
66 ACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGAGCATTCTGCCTCTCCGGTCGACTGAGC
* * *
31642702 GCCCCCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
131 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATCCCATGTCTAA
* *
31642759 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCAACAGTAGGACTAGC
1 GCATACGGAGTGCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTG---C----GG-C-AGC
* *
31642823 AGTAGGATCGACAGCACGCAGGGGGGGATCGGGCTGATCCCCGACTTGTGTATTCTGCCTCTCCG
56 AGTAGGATCGACAGCACGCA-GGGGGGATCGGGCTGATCCCCGACTTGAGCATTCTGCCTCTCCG
* *
31642888 GCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GT
120 GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCAT-CCCATGT
31642952 CTAA
184 CTAA
* * *
31642956 GCATATGGAGTGCATTCCCAGTCTACGATCGGACCAGACCGAGGGTTGCGGCAGCA--A-GATCG
1 GCATACGGAGTGCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGTAGGATCG
* * * *
31643018 ACAGCACGCAGGTGGGATCGGG-TCGAT-CCCTAGCTTGCGCATTCTGCCTCTCCGGTTGACTGA
66 ACAGCACGCAGGGGGGATCGGGCT-GATCCCCGA-CTTGAGCATTCTGCCTCTCCGGTCGACTGA
* * * * *
31643081 GCGCCCGTACGCCCGTTTCATGGGTAGGCTTAGGCATATGGAA-TTCATTCCATGTCTAA
129 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-CGAAGTTCATCCCATGTCTAA
31643140 GC
1 GC
31643142 CCCAGTCGGA
Statistics
Matches: 324, Mismatches: 39, Indels: 40
0.80 0.10 0.10
Matches are distributed among these distances:
183 9 0.03
184 129 0.40
185 18 0.06
186 1 0.00
188 4 0.01
189 1 0.00
190 2 0.01
192 1 0.00
194 1 0.00
196 20 0.06
197 134 0.41
198 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (187 bp):
GCATACGGAGTGCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGTAGGATCG
ACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGAGCATTCTGCCTCTCCGGTCGACTGAGC
GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATCCCATGTCTAA
Found at i:31642960 original size:26 final size:26
Alignment explanation
Indices: 31642930--31642980 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
31642920 GTTGACTTAG
*
31642930 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
* * *
31642956 GCATATGGAGTGCATTCCCAGTCTA
1 GCATACGAAGTGCATCCCCAGTCTA
31642981 CGATCGGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTGCATCCCCAGTCTAA
Found at i:31643458 original size:158 final size:155
Alignment explanation
Indices: 31642956--31643458 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 155
31642946 CCCAGTCTAA
* * * * * *
31642956 GCATATGGAGTGCATTCCCAGTCTACGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCGACA
* * *
31643021 GCACGCAGGTGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGTTGACTGAGCGCC
65 GCACACAGGGGGGATCGGGTCGATCCCTA-CTTGCGCATTCTGCCTCTTCGG-TGACTGAGCGCC
* * *
31643086 CGTACGCCCGTTTCATGGGTAGGCTTAG
128 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
31643114 GCATATGGAATTCATT-CCATGTCTAAGCCCCAG-TCGGACCAAGGTTATG-GCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGT-TGCGCAGCAGGATCGA
* * * * * * * *
31643176 CAGCACATAGAGGGGGATCGGGTCGATCCCTGGCTTGGGCATTATGCCTCTTTGGTCGGCTCAAC
63 CAGCACACAG-GGGGGATCGGGTCGATCCCT-ACTTGCGCATTCTGCCTCTTCGGT-GACTGAGC
* * *
31643241 GCCCGTACGCTCGTTTCGTTGGTTGACTTAT
125 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * *
31643272 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCGACA
***
31643337 GCACACAGGGGGGATCGAACCGATCCCCTACTTGCGCATTCTGCCTCTTCGGCTGACTGAGCGCC
65 GCACACAGGGGGGATCGGGTCGAT-CCCTACTTGCGCATTCTGCCTCTTCGG-TGACTGAGCGCC
*
31643402 CGTACACTCGTTTCGTGGGTTGGCTTAG
128 CGTACGCTCGTTTCGTGGGTTGGCTTAG
31643430 GCATACGGAGTTCATT-CCATGTCTAAGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT
31643459 TTTGAGCCAC
Statistics
Matches: 274, Mismatches: 58, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 30 0.11
158 213 0.78
159 31 0.11
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGCAGGATCGACAG
CACACAGGGGGGATCGGGTCGATCCCTACTTGCGCATTCTGCCTCTTCGGTGACTGAGCGCCCGT
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31644081 original size:159 final size:157
Alignment explanation
Indices: 31643783--31644200 Score: 412
Period size: 159 Copynumber: 2.6 Consensus size: 157
31643773 TTTCAAAGGC
* * * * * *
31643783 CGATCCTTGGCTTGCGCATTCTGCCTCTTCGGCTAGCTGAACGTCCGCACGCCCGTTTCATGGGT
1 CGAT-CTTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * * * *
31643848 TGGCTTAGGCATAGGGAGTTCATT-CTATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCG
65 TGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCAGACCGAGGGTTGTGACAGCA
* *
31643912 GGACCCACAGCACGCAGAGGGGGATCGGG
130 GGACCCACAGCACACAG-GGGGGACCGGG
* * * *
31643941 TCGATCTTTGACTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGCCCGCATGCTCGTTTCATGGG
1 -CGATC-TTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * * * *
31644006 TTGACTTAGGCATACGAAGTACATTCCCA-GTCTAAGATCGAATCGGACCGAGGGTT-TCGACAG
64 TTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCAGACCGAGGGTTGT-GACAG
* * *
31644069 CAGGATCGACAGCACATAGGGGGGACCGGG
128 CAGGACCCACAGCACACAGGGGGGACCGGG
*** * * * * *
31644099 CTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGTCTGAGCACCCGCACGCTCGTTTTATGGG
1 C-GATCTTGA-CTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
31644164 TTGGCTTACGCATACGGAGTTCATT-CAATGTCTAAGA
64 TTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGA
31644201 AAACGGAGTT
Statistics
Matches: 209, Mismatches: 44, Indels: 13
0.79 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 90 0.43
159 113 0.54
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (157 bp):
CGATCTTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCAGACCGAGGGTTGTGACAGCAG
GACCCACAGCACACAGGGGGGACCGGG
Found at i:31644281 original size:24 final size:24
Alignment explanation
Indices: 31644251--31644299 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
31644241 GGGTTACGGT
31644251 AGCAGGACCAGCAACAGGATTGGC
1 AGCAGGACCAGCAACAGGATTGGC
*
31644275 AGCAGGACCAGCAGCAGGATTGGC
1 AGCAGGACCAGCAACAGGATTGGC
31644299 A
1 A
31644300 ACATGCAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.35, T:0.08
Consensus pattern (24 bp):
AGCAGGACCAGCAACAGGATTGGC
Found at i:31645047 original size:25 final size:26
Alignment explanation
Indices: 31645006--31645057 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
31644996 GTTGGCTTAG
*
31645006 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
31645032 GCATAC-GAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
31645057 G
1 G
31645058 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:31645415 original size:26 final size:26
Alignment explanation
Indices: 31645385--31645437 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31645375 GTAGACTTAG
31645385 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
31645411 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31645437 G
1 G
31645438 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31645732 original size:159 final size:160
Alignment explanation
Indices: 31645411--31645915 Score: 426
Period size: 159 Copynumber: 3.2 Consensus size: 160
31645401 CCTAGTCTAA
* * * * *
31645411 GCATACGGAGTTTATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGGTTG-TGGCAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCT-GCTGCAGGATCG
* ** * * ** * * * * * *
31645473 ACAGCACGCAGGG-GGGACCGAGCCGATATCAGGCTTACGCATTCTGCCTCTCCGACCGGCT-GA
64 ACAGCACACAGGGACAGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACCGG-TACA
*
31645536 GCGC-CTGCACGCCCGTTTCATGGGTTGGCTTAG
128 GCGCAC-GCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
31645569 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTG-TGGTAGCGGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCTGCT-GCAGGATC-G
* * * *
31645631 ACAGCACACAAAGGG-C-GATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCT-TCGACGGGTA
64 ACAGCACAC--AGGGACAGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCT-GACCGGTA
* *
31645693 CAGCGCACGCACGCTCGTTTCATGGGTTGACTTAT
126 CAGCGCACGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
31645728 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCGGATCAGACTGAGGGTTGCTGCTGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGCTGCTGCAGGATCGA
* * * * ** *
31645791 TAGCACACAGGGACAGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCTGTTGAGT
65 CAGCACACAGGGACAGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACCGGTACAGC
* * *
31645856 GCTCGCACGCTCGTTCCGTGGGTTGGCTTAG
130 GCACGCACGCTCGTTTCATGGGTTGGCTTAG
*
31645887 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
31645916 TACGGAGTTC
Statistics
Matches: 279, Mismatches: 50, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
157 9 0.03
158 55 0.20
159 203 0.73
160 12 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCTGCTGCAGGATCGAC
AGCACACAGGGACAGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACCGGTACAGCG
CACGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:31645937 original size:26 final size:26
Alignment explanation
Indices: 31645887--31645939 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31645877 GTTGGCTTAG
* *
31645887 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
31645913 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
31645939 G
1 G
31645940 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:31647514 original size:25 final size:26
Alignment explanation
Indices: 31647466--31647517 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
31647456 GTTGGCTTAG
*
31647466 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGCTCATTCCATGTCTAA
31647492 GCATACG-AGCTCATTCTCA-GTCTAA
1 GCATACGAAGCTCATTC-CATGTCTAA
31647517 G
1 G
31647518 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCATGTCTAA
Found at i:31647832 original size:171 final size:170
Alignment explanation
Indices: 31647541--31647858 Score: 444
Period size: 171 Copynumber: 1.9 Consensus size: 170
31647531 GAGGGTGCGA
* * *
31647541 CAGCAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGACCGGACCGATCCCCGGCTTGCGCAT
1 CAGCAGGACCAGCAACAGGATCGACAGCACACAGGGGGGACCGGACCGATCCCCAGCTTACGCAT
* * *
31647606 TTTGCCTCTCCGACCGGCTAATCGCCCGCCCGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGT
66 TATGCCTCTCCGACCGACTAATCGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGT
*
31647671 TCAT-TCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGG
131 TCATCCCCA-GTCTAAGCCCCAGCTGGACCGAGGGTTGTGG
* * ** * *
31647711 CAGCAGGATCAGCAACGGGATCGACAGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTACGCA
1 CAGCAGGACCAGCAACAGGATCGACAGCACACAG-GGGGGACCGGACCGATCCCCAGCTTACGCA
* *
31647776 TTATGCCTCTCTGACCGACTGAGT-GCCCGCACGCTCATTTCGTGGG-TAGACTTAGGCATACGG
65 TTATGCCTCTCCGACCGACT-AATCGCCCGCACGCTCATTTCGTGGGTTAG-CTTAGGCATACGG
31647839 AGTTCATCCCCAGTCTAAGC
128 AGTTCATCCCCAGTCTAAGC
31647859 GTACGGAGTT
Statistics
Matches: 129, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
170 32 0.25
171 92 0.71
172 5 0.04
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.19
Consensus pattern (170 bp):
CAGCAGGACCAGCAACAGGATCGACAGCACACAGGGGGGACCGGACCGATCCCCAGCTTACGCAT
TATGCCTCTCCGACCGACTAATCGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGT
TCATCCCCAGTCTAAGCCCCAGCTGGACCGAGGGTTGTGG
Found at i:31647876 original size:26 final size:26
Alignment explanation
Indices: 31647834--31647883 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
31647824 GACTTAGGCA
31647834 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* *
31647860 TACGGAGTTTATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
31647884 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:31648164 original size:159 final size:158
Alignment explanation
Indices: 31647978--31648360 Score: 381
Period size: 157 Copynumber: 2.4 Consensus size: 158
31647968 CTCCAATCGA
* *
31647978 CTGAACGC-CTGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 CTGAACGCAC-GCACGCTC-GTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAA
* * *
31648041 GCCTCAG-CTGGACCGAGGGTCG-TGGCAGCGAGACCA-ACAGCACACAAAGGGCA-ACCGGACC
64 GCATCAGACTGGACCAAGGGTCGCT-GCAGCAAGA-CAGACAG--CAC-AAGGGCAGACCGGACC
**
31648102 AATCCCTGACTTGCGCATTATGCCTCT-TCGACC-G
124 AATCCCCAACTTGCGCATTATGCCTCTCT-GACCTG
* * *
31648136 GTGCAACGCACGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAA
1 CTG-AACGCACGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCAT-GTCTAA
* * * * * * ** *
31648200 G-ATCAGACTGGACTAAGGGTTGCTGCTGCAAGATAGACAGCACAGGGGCAGATCGGGTCGATCC
64 GCATCAGACTGGACCAAGGGTCGCTGCAGCAAGACAGACAGCACAAGGGCAGACCGGACCAATCC
* *
31648264 CCAACTTGCGCATTCTGCCTCTCTGGCCTG
129 CCAACTTGCGCATTATGCCTCTCTGACCTG
** * *
31648294 CTGAGTGCTCGCACGCTCGTTTCATGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTCTAAGC
1 CTGAACGCACGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
31648359 AT
66 AT
31648361 GCGGAGTTCA
Statistics
Matches: 186, Mismatches: 27, Indels: 24
0.78 0.11 0.10
Matches are distributed among these distances:
156 6 0.03
157 87 0.47
158 15 0.08
159 75 0.40
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (158 bp):
CTGAACGCACGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
ATCAGACTGGACCAAGGGTCGCTGCAGCAAGACAGACAGCACAAGGGCAGACCGGACCAATCCCC
AACTTGCGCATTATGCCTCTCTGACCTG
Found at i:31648383 original size:26 final size:26
Alignment explanation
Indices: 31648328--31648383 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
31648318 TGGGTTGGCT
* * *
31648328 TAAGCATATGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATATA
* *
31648354 TAAGCATGCGGAGTTCATTCCCTATA
1 TAAGCATACGGAGTTCATTCCATATA
31648380 TAAG
1 TAAG
31648384 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATATA
Found at i:31649960 original size:25 final size:26
Alignment explanation
Indices: 31649912--31649963 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
31649902 GTTGGCTTAG
*
31649912 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGCTCATTCCATGTCTAA
31649938 GCATACG-AGCTCATTCTCA-GTCTAA
1 GCATACGAAGCTCATTC-CATGTCTAA
31649963 G
1 G
31649964 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCATGTCTAA
Found at i:31650278 original size:171 final size:170
Alignment explanation
Indices: 31649987--31650304 Score: 453
Period size: 171 Copynumber: 1.9 Consensus size: 170
31649977 GAGGGTGCGA
* *
31649987 CAGCAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGACCGGACCGATCCCCGGCTTGCGCAT
1 CAGCAGGACCAGCAACAGGATCGACAGCACACAGGGGGGACCGGACCGATCCCCAGCTTGCGCAT
* *
31650052 TTTGCCTCTCCGACCGGCTAATCGCCCGCCCGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGT
66 TATGCCTCTCCGACCGGCTAATCGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGT
*
31650117 TCAT-TCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGG
131 TCATCCCCA-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGG
* * ** * *
31650157 CAGCAGGATCAGCAACGGGATCGACAGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCA
1 CAGCAGGACCAGCAACAGGATCGACAGCACACAG-GGGGGACCGGACCGATCCCCAGCTTGCGCA
* * *
31650222 TTATGCCTCTCTGACCGGCTGAGT-GCCCGCACGCTCGTTTCGTGGG-TAGACTTAGGCATACGG
65 TTATGCCTCTCCGACCGGCT-AATCGCCCGCACGCTCATTTCGTGGGTTAG-CTTAGGCATACGG
31650285 AGTTCATCCCCAGTCTAAGC
128 AGTTCATCCCCAGTCTAAGC
31650305 GTACGGAGTT
Statistics
Matches: 130, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
170 32 0.25
171 93 0.72
172 5 0.04
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (170 bp):
CAGCAGGACCAGCAACAGGATCGACAGCACACAGGGGGGACCGGACCGATCCCCAGCTTGCGCAT
TATGCCTCTCCGACCGGCTAATCGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGT
TCATCCCCAGTCTAAGCCCCAGCCAGACCGAGGGTTGTGG
Found at i:31650322 original size:26 final size:26
Alignment explanation
Indices: 31650280--31650329 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
31650270 GACTTAGGCA
31650280 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* *
31650306 TACGGAGTTTATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
31650330 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:31650597 original size:159 final size:158
Alignment explanation
Indices: 31650402--31650806 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 158
31650392 CCCAGGCTTA
* * * * *
31650402 CGCATTCTGGCTCTCCGACC-GACTGAACGC-CTGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
1 CGCATTATGCCTCTCTGACCTG-CTGAACGCAC-GCACGCTCGTTTCATGGGTTGGCTTAAGCAT
* * * *
31650465 AGGGAGTTCATTCCATGTCTAAGCCTCAG-CTGGACCGAGGGTCG-TGGCAGCGAGACCA-ACAG
64 ACGGAGTTCATTCCATGTCTAAGCATCAGACTGGACCAAGGGTCGCT-GCAGCAAGA-CAGACAG
**
31650527 CACACAAAGGGC-GACCGGGCCAATCCCTGACTTG
127 --CAC-AAGGGCAGACCGGGCCAATCCCCAACTTG
* * *
31650561 CGCATTATGCCTCT-TCGACC-GGTGCAACGCACGCACGCTCGTTTCATGGGTTGACTTATGCAT
1 CGCATTATGCCTCTCT-GACCTGCTG-AACGCACGCACGCTCGTTTCATGGGTTGGCTTAAGCAT
* * * *
31650624 ACGGAGTTCATTCC-TAGTCTAAG-ATCAGACTGGACTAAGGGTTGCTGCTGCAAGATAGACAGC
64 ACGGAGTTCATTCCAT-GTCTAAGCATCAGACTGGACCAAGGGTCGCTGCAGCAAGACAGACAGC
* * * *
31650687 ACAGGGGCAGATCGGGTCGATCCCCAACTTG
128 ACAAGGGCAGACCGGGCCAATCCCCAACTTG
* * ** * *
31650718 CGCATTCTGCCTCTCTGGCCTGCTGAGTGCTCGCACGCTCGTTTCATGGGTTGGCTTAAGCATAT
1 CGCATTATGCCTCTCTGACCTGCTGAACGCACGCACGCTCGTTTCATGGGTTGGCTTAAGCATAC
31650783 GGAGTTCATTCCATGTCTAAGCAT
66 GGAGTTCATTCCATGTCTAAGCAT
31650807 GCGGAGTTCA
Statistics
Matches: 204, Mismatches: 30, Indels: 25
0.79 0.12 0.10
Matches are distributed among these distances:
156 5 0.02
157 89 0.44
158 15 0.07
159 93 0.46
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.24
Consensus pattern (158 bp):
CGCATTATGCCTCTCTGACCTGCTGAACGCACGCACGCTCGTTTCATGGGTTGGCTTAAGCATAC
GGAGTTCATTCCATGTCTAAGCATCAGACTGGACCAAGGGTCGCTGCAGCAAGACAGACAGCACA
AGGGCAGACCGGGCCAATCCCCAACTTG
Found at i:31650804 original size:26 final size:26
Alignment explanation
Indices: 31650774--31650829 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
31650764 TGGGTTGGCT
* *
31650774 TAAGCATATGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATATC
* *
31650800 TAAGCATGCGGAGTTCATTCCCTATC
1 TAAGCATACGGAGTTCATTCCATATC
31650826 TAAG
1 TAAG
31650830 ATTTTGAGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATATC
Found at i:31651914 original size:159 final size:155
Alignment explanation
Indices: 31651526--31652019 Score: 463
Period size: 159 Copynumber: 3.1 Consensus size: 155
31651516 ATCCCCAGTC
* * * * *
31651526 TAGGCATACGGAGTTCCTTCCCGGTCTAAGATCAGACCTAATCGAGGTTTGTGACAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGACT-GAGGGTTGTGACAGTAGGATCG
* * * * *
31651591 ATAGCACGCATGGGGTACCAGGTCGAT-CCTCGGCTTACGCATTCTGCCTCTCCGATCGGTTGAG
64 ATAGCACGCAAGGGGGACCAGGACGATCCCT-GGCTT-CGCATTCTGCCTCTCCGACCGGCTGAG
* * *
31651655 CACCCGCACGCCCGTTTCGTGGGATGGCT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCT
* ** * * * ** *
31651684 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAACC-GACTGAGGGTTGTGACAGTAGGATC
** * * * * *
31651748 GGCAGCACGCAAAGGGGGATCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCA
63 GATAGCACGC-AAGGGGGACCAGGACGATCCCTGGCTT-CGCATTCTGCCTCTCCGACCGGCTGA
* * * *
31651813 ACGCCCGTACGCTCATTTCGTGGGTTGACT
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * *
31651843 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGAAAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACC-GACTGAGGGTTGTGACAGTAGGATCG
* * * * * * *
31651908 ATAGCACGCAGGGGGGACCGGGACGATCCCCGACTTCGCA-TCTGCCTCTCCGGCCTGCTGAGTG
64 ATAGCACGCAAGGGGGACCAGGACGATCCCTGGCTTCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
31651972 CCCGCACGCTCGTTTCATGGGTTGGCT
129 CCCGCACGCTCGTTTCGTGGGTTGGCT
*
31651999 TAGGCATACCGAGTTCATTCC
1 TAGGCATACGGAGTTCATTCC
31652020 ACGTCTCACC
Statistics
Matches: 263, Mismatches: 66, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
156 61 0.23
157 6 0.02
158 71 0.27
159 119 0.45
160 6 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (155 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACCGACTGAGGGTTGTGACAGTAGGATCGAT
AGCACGCAAGGGGGACCAGGACGATCCCTGGCTTCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCT
Found at i:31652033 original size:26 final size:26
Alignment explanation
Indices: 31652010--31652077 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
31652000 AGGCATACCG
31652010 AGTTCATTCCACGTCTCACCATACGA
1 AGTTCATTCCACGTCTCACCATACGA
31652036 AGTTCATTCCACGTCTCACCATACGA
1 AGTTCATTCCACGTCTCACCATACGA
*
31652062 AGTTCATTCCAAGTCT
1 AGTTCATTCCACGTCT
31652078 AAGATCAGAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.29
Consensus pattern (26 bp):
AGTTCATTCCACGTCTCACCATACGA
Found at i:31652545 original size:157 final size:158
Alignment explanation
Indices: 31652293--31652579 Score: 398
Period size: 157 Copynumber: 1.8 Consensus size: 158
31652283 AATGACAGCG
* * * *
31652293 GGATCGGCAGCACGTAGAGGGGGACCGGGCTAATCCTCGGCTTATGCATTATGCCTCTCCGGCCG
1 GGATCGGCAGCACG-ACAGGGGGACCGGGCCAATCCTCGGCTTACGCATTATGCCTCTCCGCCCG
* *
31652358 ACTGAGCACCCGCACACTCGTTTCAAGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAG
65 ACTGAGCACACGCACACTCATTTCAAGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAG
31652423 ATTGGACCAGACTGACGGATGCGCCAGTA
130 ATTGGACCAGACTGACGGATGCGCCAGTA
* *
31652452 GGATCGGCAGCAC-ACAGGGGGACCGGGCCAATCC-CTGGCTTGCGCATTCTGCCTCTCCGCCCG
1 GGATCGGCAGCACGACAGGGGGACCGGGCCAATCCTC-GGCTTACGCATTATGCCTCTCCGCCCG
* * ** ** * *
31652515 GCTGAGCGCACGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
65 ACTGAGCACACGCACACTCATTTCAAGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAG
31652580 CATACAGAGT
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
156 1 0.01
157 97 0.87
159 13 0.12
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
GGATCGGCAGCACGACAGGGGGACCGGGCCAATCCTCGGCTTACGCATTATGCCTCTCCGCCCGA
CTGAGCACACGCACACTCATTTCAAGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAGA
TTGGACCAGACTGACGGATGCGCCAGTA
Found at i:31652582 original size:26 final size:26
Alignment explanation
Indices: 31652553--31652605 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31652543 GTTGACTTAG
*
31652553 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31652579 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31652605 G
1 G
31652606 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31652933 original size:26 final size:26
Alignment explanation
Indices: 31652897--31652949 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31652887 GTTGGCTTAG
31652897 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31652923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31652949 G
1 G
31652950 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31653648 original size:26 final size:26
Alignment explanation
Indices: 31653618--31653670 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
31653608 GTTGACTTAG
31653618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31653644 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31653670 G
1 G
31653671 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31654538 original size:317 final size:315
Alignment explanation
Indices: 31653695--31654601 Score: 1086
Period size: 318 Copynumber: 2.9 Consensus size: 315
31653685 AGGGTTACGG
* * * *
31653695 CAGCACGTAGGGGGGACCGGGCC-GATCCCCAGCTTGTACATTCTGCCTGTCCGGCTGGCTGAGC
1 CAGCACGAAGGGGGGACCGGGCCGGA--CCCGGCTTGTGCATTCTGCCTCTCCGGC-GGCTGAGC
* * * * *
31653759 CCCCGCACACCCGTTTCATGGGTTAGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGC
63 ACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGC
* * * * *
31653824 CAGACCGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGTGATTGGGCCGTTCCCCGGCTT
127 CAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGCGATCGAGCCGATCCCCGGCTT
* * * *** *
31653889 ATGCATTATGCCTTTTCGATTGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
192 GTGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATA
* *
31653954 CGAAGTTCATT-CCTAGTCTAAGATCAGATCGGACCAAGGGTTGCCATAGCAGGATCGA
257 CGGAGTTCATTCCCGAGTCTAAGATCAGATCGGACCAAGGGTTGCCATAGCAGGATCGA
* * *
31654012 CAGCACGTAAGGGGGGACCGGGCCAGG-CCACGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAG
1 CAGCACG-AAGGGGGGACCGGGCC-GGACC-CGGCTTGTGCATTCTGCCTCTCCG-GCGGCTGAG
** * *
31654076 CACCTGTGCGCCCGTTTCATGGGTTGGCATAGGCTTAGGGAGTTCATTCCATGTCTAAGCGCCAG
62 CACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC-CCAG
* * ** * *
31654141 CCGGACCGAGGGTTGTGGCAGCGGGACTGGTAGCACGCAGAGGGCGATCGAGTCGATCCTCGGCT
126 CCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGCGATCGAGCCGATCCCCGGCT
* * * *
31654206 TGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCGT
191 TGTGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCAT
* ** *** * *
31654271 ACGGAGTTCATTCCCGA-TCTAAGATCGGATCGGACTGAGGGTTGTGGTAGTAGGATTGA
256 ACGGAGTTCATTCCCGAGTCTAAGATCAGATCGGACCAAGGGTTGCCATAGCAGGATCGA
* * *
31654330 CAGCACGCAGGGGGGATCGGGCCGGACCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCA
1 CAGCACGAAGGGGGGACCGGGCCGGACCC-GGCTTGTGCATTCTGCCTCTCCGG-CGGCTGAGCA
** * *
31654395 CCTGCACGCTTGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
64 CCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AGCC
* ** * *
31654460 AGACCGAGGGTTGTGGTAGCGGGACCGACAGCACATAGAGGG-GAATCGAACCGATCCCCGACTT
128 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGCG-ATCGAGCCGATCCCCGGCTT
* * * *
31654524 GTGCATTCTGCCTCTCCGGCCGGCTGAGAGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATA
192 GTGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATA
31654589 CGGAGTTCATTCC
257 CGGAGTTCATTCC
31654602 ATGTCTAAGC
Statistics
Matches: 497, Mismatches: 81, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
316 6 0.01
317 231 0.46
318 255 0.51
319 4 0.01
320 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (315 bp):
CAGCACGAAGGGGGGACCGGGCCGGACCCGGCTTGTGCATTCTGCCTCTCCGGCGGCTGAGCACC
TGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCAGA
CCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGCGATCGAGCCGATCCCCGGCTTGTGC
ATTATGCCTCTCCGGCCGGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCGAGTCTAAGATCAGATCGGACCAAGGGTTGCCATAGCAGGATCGA
Found at i:31654611 original size:159 final size:157
Alignment explanation
Indices: 31653695--31654611 Score: 777
Period size: 159 Copynumber: 5.8 Consensus size: 157
31653685 AGGGTTACGG
* * * * * * * **
31653695 CAGCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGTACATTCTGCCTGTCCGGCTGGCTGAGCC
1 CAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGAG
* * *
31653760 CCCGCACACCCGTTTCATGGGTTAGCTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCCCCAGC
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAG-CCCAGC
* * *
31653824 CAGACCGAGGGTTGTGGCAACGGGACCGA
129 CGGACCGAGGGTTGTGGTAGCGGGACCGA
* * * * * * *** * *
31653853 CAGCACGCAGAGGGTGATTGGGCCGTTCCCCGGCTTATGCATTATGCCTTTTCGATTGGCTCAGT
1 CAGCACGCAGAGGG-GATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGA
* * * * **
31653918 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAGATCAGA
65 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAG-
* * *** * *
31653982 TCGGACCAAGGGTTGCCATAGCAGGATCGA
128 CCGGACCGAGGGTTGTGGTAGCGGGACCGA
* * * * * * * *
31654012 CAGCACGTAAGGGGGGACCGGGCC-AGGCCACGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAG
1 CAGCACG-CAGAGGGGATCGGGCCGA-TCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAG
* ** * * * *
31654076 CA-CCTGTGCGCCCGTTTCATGGGTTGGCATAGGCTTAGGGAGTTCATTCCATGTCTAAGCGCCA
64 -AGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC-CCA
* * *
31654140 GCCGGACCGAGGGTTGTGGCAGCGGGACTGG
127 GCCGGACCGAGGGTTGTGGTAGCGGGACCGA
* * * * * * * *
31654171 TAGCACGCAGAGGGCGATCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGT
1 CAGCACGCAGAGGG-GATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGA
* * * * ** *
31654236 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCC-CGATCTAAGATCGGA
65 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-TCTAAGCCCAG-
* * ** **
31654300 TCGGACTGAGGGTTGTGGTAGTAGGATTGA
128 CCGGACCGAGGGTTGTGGTAGCGGGACCGA
* * * *
31654330 CAGCACGCAGGGGGGATCGGGCCGGA-CCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGC
1 CAGCACGCAGAGGGGATCGGGCC-GATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAG-
* * * * *
31654394 A-CCTGCACGCTTGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
64 AGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AG
*
31654458 CCAGACCGAGGGTTGTGGTAGCGGGACCGA
128 CCGGACCGAGGGTTGTGGTAGCGGGACCGA
** ** *
31654488 CAGCACATAGAGGGGAATCGAACCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAGA
1 CAGCACGCAGAGGGG-ATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGA
* * *
31654553 GCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31654612 ATACGGAGTT
Statistics
Matches: 586, Mismatches: 152, Indels: 41
0.75 0.20 0.05
Matches are distributed among these distances:
158 146 0.25
159 429 0.73
160 11 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGAG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCG
GACCGAGGGTTGTGGTAGCGGGACCGA
Found at i:31654613 original size:26 final size:26
Alignment explanation
Indices: 31654584--31654636 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31654574 GTTGGCTTAG
31654584 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31654610 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31654636 G
1 G
31654637 AGTTTGATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31655761 original size:26 final size:26
Alignment explanation
Indices: 31655731--31655783 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31655721 GTAGGCTTAG
31655731 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
31655757 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31655783 G
1 G
31655784 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31656145 original size:26 final size:26
Alignment explanation
Indices: 31656111--31656161 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31656101 TTGACTTAGG
*
31656111 CATATGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
31656137 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
31656162 GATCGAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:31656667 original size:26 final size:26
Alignment explanation
Indices: 31656637--31656689 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31656627 GTTGACTTAG
*
31656637 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
31656663 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31656689 G
1 G
31656690 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31656994 original size:158 final size:156
Alignment explanation
Indices: 31656671--31657004 Score: 443
Period size: 157 Copynumber: 2.1 Consensus size: 156
31656661 AAGCATATGA
** * * *
31656671 AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCTGGATCGACAGCACGTAT
1 AGTTCATT-CCAGTCTAAGATCGAACCGGACCGAGGGTTGAAGCAGCAGGATCGACAACACGCAT
* * *
31656736 GGGGGACCGGGCCGATCCCTGATTTGCGCATCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTC
65 GGGGGACCGGGCCGATCCCTGACTTACGCATCTACCTCTCCGACCGACTGAGCGCCCGCACGCTC
*
31656801 GTTTCGTGGGTTGGCTTAGGCATACAG
130 GTTTCATGGGTTGGCTTAGGCATACAG
* * * *
31656828 AGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTGAAGTAGCAGGATCGACAACACGCAT
1 AGTTCATTCC-AGTCTAAGATCGAACCGGACCGAGGGTTGAAGCAGCAGGATCGACAACACGCAT
* * * * * * *
31656893 GGGGGATCGGGTCGGTCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACGTT
65 GGGGGACCGGGCCGATCCCTGACTTACGCA-TCTACCTCTCCGACCGACTGAGCGCCCGCACGCT
*
31656958 CGTTTCATGGGTTGGCTTAGGCATACGG
129 CGTTTCATGGGTTGGCTTAGGCATACAG
31656986 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCA-GTCTAAG
31657005 CATACGAAGT
Statistics
Matches: 153, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
156 2 0.01
157 78 0.51
158 73 0.48
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCAGTCTAAGATCGAACCGGACCGAGGGTTGAAGCAGCAGGATCGACAACACGCATG
GGGGACCGGGCCGATCCCTGACTTACGCATCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACAG
Found at i:31657028 original size:26 final size:26
Alignment explanation
Indices: 31656978--31657030 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31656968 GTTGGCTTAG
* *
31656978 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
31657004 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
31657030 G
1 G
31657031 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:31657230 original size:354 final size:341
Alignment explanation
Indices: 31656591--31657783 Score: 853
Period size: 341 Copynumber: 3.4 Consensus size: 341
31656581 GATTGGCCTT
*
31656591 TCCGCCCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
1 TCCGACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * *
31656656 AGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCTGG
66 AGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGG
* * * *
31656721 ATCGACAGCACGTATGGGGGACCGGGCCGATCCCTGATTTGCGCATCTGCCTCTCCGACCGACTG
131 ATCGACAGCACGTAGGGGGGACCAGGCCGATCCCTGACTTACGCATCTGCCTCTCCGACCGACTG
* ***
31656786 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTG
196 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGACCA
*
31656851 GACCGGATCGAGGGTTGAAGTAGCAGGATCGACAACACGCATGGGGGATCGGGTCGGTCCCTGGC
261 GACCGAATCGAGGGTTGAAGTAGCAGGATCGACAACACGCATGGGGGATCGGGTCGGTCCCTGGC
31656916 TTACGCATTCTACCTC
326 TTACGCATTCTACCTC
* * * * *
31656932 TCCGACCGGCTGAGTGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCC
1 TCCGACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
** *
31656996 ATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATC-AGATTGGATCGAGGGTTGTGGTAGCA
66 A-GTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGA-ACCGGACCGA-GG--GT--T-GC-
* * * * * *
31657060 GGACCAGCAGCAGGATCGATATCATGTAGGGGGGATCAGGCTGAT-CCTCGGCTTACGCATTCTG
122 -G----GCAGCAGGATCGACAGCACGTAGGGGGGACCAGGCCGATCCCT-GACTTACGCA-TCTG
* * * *
31657124 CCTTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
180 CCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
* * ** **
31657189 TCC-ATGTCTAAGCCCCAG-TCGAATCGAGGGTTGTGGTAGCAGGACTGGCAGTGGGATCGGCAG
245 TCCTA-GTCTAAG-ACCAGACCGAATCGAGGGTTGAAGTAGCAGGA-T--C-----GA-CAACA-
* * * * * * * *
31657252 CTCGTAGAAGGGGATCGAG-CTGATTCCTGAATTGCGTATTATGCCTTTTCAGTTGGCCTC
298 CGCAT-G--GGGGATCGGGTC-GGTCCCTG----GC---TTACG-C-ATTC---T-ACCTC
* * * * * * * *
31657312 TCCGATCGGCTGAGCGTCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCTTCCCC
1 TCCGACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * * * * * * * *
31657377 AATCTAAGCAGATGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCAAAGGTTGCGACAGTAG
66 AGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCAG
* * * * *
31657441 GATCGACAGCACGCAGGGGGGACCAGACCGATCCCCGACTTACGCGTTCTAG-CTCTCCGATCGA
130 GATCGACAGCACGTAGGGGGGACCAGGCCGATCCCTGACTTACGC-ATCT-GCCTCTCCGACCGA
* * * * *
31657505 CTGAGCACCCAAGCGCCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
193 CTGAGCA-CC---CG--C--ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTA
* * * * * ** * * * * * * *
31657570 GTCTAAGATCGGACCGGACCAAGGGTTGTGGTAGTAGAATCGATAGCACGCAAGGGGGGACCCGG
250 GTCTAAGACCAGACCGAATCGAGGGTTGAAGTAGCAGGATCGACAACACGC-ATGGGGGATCGGG
* * *
31657635 -CTGGT-CCTCGGCTTGCGCATTCTGCCCC
314 TC-GGTCCCT-GGCTTACGCATTCTACCTC
* * * * * *
31657663 TCCGACCGGCTAAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCC
1 TCCGACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * * * * *
31657727 ATGTCTAACCATATGGAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGCG
66 A-GTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCG
31657784 ATAGCAAGAC
Statistics
Matches: 667, Mismatches: 122, Indels: 117
0.74 0.13 0.13
Matches are distributed among these distances:
340 4 0.01
341 97 0.15
342 2 0.00
344 2 0.00
346 1 0.00
347 2 0.00
349 1 0.00
350 31 0.05
351 75 0.11
352 4 0.01
353 39 0.06
354 96 0.14
355 5 0.01
356 1 0.00
357 4 0.01
360 2 0.00
362 2 0.00
363 6 0.01
364 15 0.02
365 1 0.00
366 4 0.01
367 18 0.03
368 58 0.09
369 5 0.01
371 2 0.00
372 3 0.00
373 1 0.00
374 7 0.01
375 5 0.01
376 70 0.10
377 3 0.00
379 2 0.00
380 96 0.14
381 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (341 bp):
TCCGACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
AGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGG
ATCGACAGCACGTAGGGGGGACCAGGCCGATCCCTGACTTACGCATCTGCCTCTCCGACCGACTG
AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGACCA
GACCGAATCGAGGGTTGAAGTAGCAGGATCGACAACACGCATGGGGGATCGGGTCGGTCCCTGGC
TTACGCATTCTACCTC
Found at i:31657744 original size:26 final size:25
Alignment explanation
Indices: 31657710--31657759 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
31657700 TTGGCTTAGG
31657710 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCA-GTCTAAC
*
31657736 CATATGGAGTTCATTCCAGTCTAA
1 CATACGGAGTTCATTCCAGTCTAA
31657760 GATCGGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (25 bp):
CATACGGAGTTCATTCCAGTCTAAC
Found at i:31657947 original size:26 final size:26
Alignment explanation
Indices: 31657917--31657969 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31657907 GTTGATTTAG
31657917 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31657943 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31657969 G
1 G
31657970 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31658289 original size:26 final size:26
Alignment explanation
Indices: 31658260--31658312 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31658250 GTTGGCTTAG
* *
31658260 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
31658286 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31658312 G
1 G
31658313 AGTTTGAGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31659338 original size:159 final size:159
Alignment explanation
Indices: 31659045--31659602 Score: 483
Period size: 159 Copynumber: 3.5 Consensus size: 159
31659035 GATCAGACTG
* * * * *
31659045 GACCGAGGGTTGTGGCA-GCAGGA-TCAACAGCACGTAGGGGGGA-TCGGATCGATCCCCGGCTT
1 GACCGAGGGTTGTGGCATGCAGGACT-GACAGCACGCAGAGGGGACTGGGCT-GATCCCCGGCTT
* * * * * * * * * * * ** * *
31659107 ACGTATTTTACCTCTCTGATTGGTTGAGCACCCGCACACCCGTTTTGTGGATTGGCTTAGGCATA
64 GCGCATTTTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCCTGTTTCATGGGTTGACTTAGGCATA
* * *
31659172 CGGAGTTCATTCCACATCTAAGCCCCAGCCG
129 CGCAGTTCATTCCACATCTAAGCCCCAACCA
* * *
31659203 GACCGAGGGTTGTGGCAATG-A-GACCGGCAGCACGCAGAGAGGGACTGGGCTGATCCCCGACTT
1 GACCGAGGGTTGTGGC-ATGCAGGACTGACAGCACGCAGAG-GGGACTGGGCTGATCCCCGGCTT
* ** **
31659266 GCGCATTATGCCTCTTTGG-CTGGCTCAGCGCCCGCACGTTTGTTTCATGGGTTGACTTAGGCAT
64 GCGCATTTTGCCTCTCCGGTC-GGCTCAGCGCCCGCACGCCTGTTTCATGGGTTGACTTAGGCAT
* ** *
31659330 ACGTAGTTCATTCC-CAGTC-AAGATCAAACCA
128 ACGCAGTTCATTCCACA-TCTAAGCCCCAACCA
* * * * * * * * *
31659361 GACTGAGGGTTGCGGTA-GCAGGATTGACAGAACGCAG-GGGGACTAGGCCGGTCCCCGGCTTAC
1 GACCGAGGGTTGTGGCATGCAGGACTGACAGCACGCAGAGGGGACTGGGCTGATCCCCGGCTTGC
* * *
31659424 GCATTTTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATACA
66 GCATTTTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCCTGTTTCATGGGTTGACTTAGGCATACG
**
31659489 CAGTTCATTCCATGTCTAAGCCCCAACCA
131 CAGTTCATTCCACATCTAAGCCCCAACCA
* * * *
31659518 GATCGAAGGTTGTGGC-TGCAGGACTGACAGCACGTAGAGGGGGA-TGGGGTCGATCCCCGGCTT
1 GACCGAGGGTTGTGGCATGCAGGACTGACAGCACGCAGA-GGGGACTGGGCT-GATCCCCGGCTT
31659581 GCGCATTTTGCCTCTCCGGTCG
64 GCGCATTTTGCCTCTCCGGTCG
31659603 ACTGAGTGCC
Statistics
Matches: 313, Mismatches: 71, Indels: 31
0.75 0.17 0.07
Matches are distributed among these distances:
156 88 0.28
157 41 0.13
158 65 0.21
159 114 0.36
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGTGGCATGCAGGACTGACAGCACGCAGAGGGGACTGGGCTGATCCCCGGCTTGC
GCATTTTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCCTGTTTCATGGGTTGACTTAGGCATACG
CAGTTCATTCCACATCTAAGCCCCAACCA
Found at i:31659452 original size:156 final size:158
Alignment explanation
Indices: 31659254--31659655 Score: 413
Period size: 159 Copynumber: 2.6 Consensus size: 158
31659244 GGACTGGGCT
* * ** *
31659254 GATCCCCGACTTGCGCATTATGCCTCTTTGG-CTGGCTCAGCGCCCGCACGTTTGTTTCATGGGT
1 GATCCCCGGCTTGCGCATTTTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGTTTGTTTCATGGGT
* * *
31659318 TGACTTAGGCATACGTAGTTCATTCCCA-GTC-AAGATCAAACCAGA-CTGAGGGTTGCGG-TAG
65 TGACTTAGGCATACGCAGTTCATT-CCATGTCTAAGACCAAACCAGATC-GAAGGTTGCGGCT-G
*
31659379 CAGGATTGACAGAACG-CAGGGGGACT-AGGCC
127 CAGGACTGACAGAACGACAGGGGGA-TGAGGCC
* * **
31659410 GGTCCCCGGCTTACGCATTTTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCGCCCGCACGTTTGTTTCATGGGTT
* * * * *
31659475 GGCTTAGGCATACACAGTTCATTCCATGTCTAAGCCCCAACCAGATCGAAGGTTGTGGCTGCAGG
66 GACTTAGGCATACGCAGTTCATTCCATGTCTAAGACCAAACCAGATCGAAGGTTGCGGCTGCAGG
* * * *
31659540 ACTGACAGCACGTAGAGGGGGATGGGGTC
131 ACTGACAGAACG-ACAGGGGGATGAGGCC
* * * * ** **
31659569 GATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGACTGAGTGCCCACACGTTCGTTTTGTGCTTT
1 GATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCGCCCGCACGTTTGTTTCATGGGTT
* *
31659634 GACTTAGGCATATGGAGTTCAT
66 GACTTAGGCATACGCAGTTCAT
31659656 CCCCGGTCTA
Statistics
Matches: 200, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
155 3 0.01
156 77 0.38
157 36 0.18
158 3 0.01
159 81 0.41
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (158 bp):
GATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCGCCCGCACGTTTGTTTCATGGGTT
GACTTAGGCATACGCAGTTCATTCCATGTCTAAGACCAAACCAGATCGAAGGTTGCGGCTGCAGG
ACTGACAGAACGACAGGGGGATGAGGCC
Found at i:31659690 original size:26 final size:26
Alignment explanation
Indices: 31659641--31659693 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31659631 TTTGACTTAG
* *
31659641 GCATATGGAGTTCATCCCCGGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
31659667 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
31659693 G
1 G
31659694 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:31660198 original size:26 final size:26
Alignment explanation
Indices: 31660169--31660220 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31660159 TGACTTAGGC
*
31660169 ATACAGAGTT-TTTCCCCAATCTAAGA
1 ATACAGAGTTCATT-CCCAATCTAAGA
*
31660195 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACAGAGTTCATTCCCAATCTAAGA
31660221 TTGAACCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGA
Found at i:31666271 original size:26 final size:26
Alignment explanation
Indices: 31666241--31666293 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31666231 GTTGACTTAG
*
31666241 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31666267 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31666293 G
1 G
31666294 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31666627 original size:159 final size:158
Alignment explanation
Indices: 31666267--31666766 Score: 579
Period size: 159 Copynumber: 3.2 Consensus size: 158
31666257 CCCAGTCTAA
* * * *
31666267 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGA-CTAGACCGAGGGTTACGATAGCAGGATC-A
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATC-GGACCGAGGGTTGCGACAGCAGGATCGA
* * * **
31666329 GCAGCACAC--GGGGGA-CTGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGG-TCGA
64 -CAGCACACAGGGGGGATC-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTC-A
* *
31666390 GCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
126 GCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
31666423 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACTGAGGGTTGTGGCAGC-GGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGACAGCAGGATCGAC
*
31666486 AGCACACAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
65 AGCACACAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCG
* * *
31666551 CCCACAAGCTCGTTTCATAGGGTTGACTTAG
129 CCCGCAAGCTCGTTTCGT-GGGTTGGCTTAG
31666582 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * *
31666646 AGCACGCAGGGGGGATCGGACCGATCCTCGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCAC
65 AGCACACAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGC
*
31666711 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCAAGCTCGTTTCGTGGGTTGGCTTAG
31666740 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31666767 CATACGGAGT
Statistics
Matches: 288, Mismatches: 42, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
155 17 0.06
156 36 0.12
157 4 0.01
158 92 0.32
159 119 0.41
160 20 0.07
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACACAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCC
CGCAAGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31666776 original size:26 final size:26
Alignment explanation
Indices: 31666740--31666792 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31666730 GTTGGCTTAG
31666740 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31666766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31666792 G
1 G
31666793 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31667655 original size:159 final size:158
Alignment explanation
Indices: 31667448--31667793 Score: 388
Period size: 158 Copynumber: 2.2 Consensus size: 158
31667438 TGGGTTGGCC
* * ** * ** * ***
31667448 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCAGGACCG
1 TAGGAATACGGAGTTCATTCCATGTCTAAGATCAAATCAGACCGAGGGTTGCAACAGCAGGACCG
** * * * *
31667513 GTAGCACGCAGAGGGGGACTGGGCCGATCATCGGCTTGCGTATTATGCCTCTTCAGTCGGCTCAG
66 ACAGCACGCAG-GGGGGACTGGGCCGATCACCGGCTTGCGCATTATGCCTCTTCAGCCAGCTCAG
*
31667578 CGCCCGCACGCTCATTTCATTGGTTGACT
130 CGCCCGCACGCTCATTTCATAGGTTGACT
* * *
31667607 TATGAATACGGAGTTCATTCCCA-GTCTAAGATCAAATCAGACCGAGGGTTGCAATAGCAGGATC
1 TAGGAATACGGAGTTCATT-CCATGTCTAAGATCAAATCAGACCGAGGGTTGCAACAGCAGGACC
* * * * * *
31667671 GACAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGTTGAG
65 GACAGCACGCAGGGGGGACTGGGCCGATCACCGGCTTGCGCATTATGCCTCTTCAGCCAGCTCAG
* * *
31667736 CGCCCGCACGCTCGTTTCCTAGGTTGGCT
130 CGCCCGCACGCTCATTTCATAGGTTGACT
*
31667765 TAGGCATACGGAGTTCATTCCATGTCTAA
1 TAGGAATACGGAGTTCATTCCATGTCTAA
31667794 ACATACGAAG
Statistics
Matches: 153, Mismatches: 32, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
157 3 0.02
158 91 0.59
159 56 0.37
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TAGGAATACGGAGTTCATTCCATGTCTAAGATCAAATCAGACCGAGGGTTGCAACAGCAGGACCG
ACAGCACGCAGGGGGGACTGGGCCGATCACCGGCTTGCGCATTATGCCTCTTCAGCCAGCTCAGC
GCCCGCACGCTCATTTCATAGGTTGACT
Found at i:31667761 original size:158 final size:158
Alignment explanation
Indices: 31667134--31667793 Score: 554
Period size: 159 Copynumber: 4.2 Consensus size: 158
31667124 CCCAAACAAA
* * * * * * *
31667134 GCATATGGAGTTCATTCCCA-GTCTAGGATCAGACCAGACCGAGGGTTGGGACAGCAAGATCGTT
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAAACCAGACCGAGGGTTGTGACAGCAGGATCGAT
* * * * * * *** *
31667198 AGCACGCTGGAGGGATTGGGCCGATCCTCTGCTTGTGCATTCTGCCTCTCCGATTGGTTGAGCAC
65 AGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCAC
*
31667263 CCTGCACACCCGTTTCATGGGTTGGCTTAG
130 CC-GCACACCCATTTCATGGGTTGGCTTAG
* * * * ** * *
31667293 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC-GAACTGAGGGTTGTGGTAGCAGGATCAAA
1 GCATACGGAGTTCATTCCATGTCTAAGACCAAACCAG-ACCGAGGGTTGTGACAGCAGGATCGAT
* * * ** * * *
31667357 AACACGAAGGGGGGACCGAACTGATCCCCGGTTTACGCATTCTGCCTCTCCGACCAGCTGAGCAC
65 AGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCAC
** *
31667422 CCGCACACCCATTTTGTGGGTTGGCCTAG
130 CCGCACACCCATTTCATGGGTTGGCTTAG
* * * * * * * *
31667451 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCAGGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGTTGTGACAGCAGGATCGATA
** * * * * * * *
31667516 GCACGCAGAGGGGGACTGGGCCGATCATCGGCTTGCGTATTATGCCTCTTC-AGTCGGCTCAGCG
66 GCACGCAG-GGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCAGCTGAGCA
* * * * *
31667580 CCCGCACGCTCATTTCATTGGTTGACTTAT
129 CCCGCACACCCATTTCATGGGTTGGCTTAG
* * * ** * *
31667610 GAATACGGAGTTCATTCCCA-GTCTAAGATCAAATCAGACCGAGGGTTGCAATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAAACCAGACCGAGGGTTGTGACAGCAGGATCGAT
* * * * *
31667674 AGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGTTGAGCGC
65 AGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCAC
* * * * *
31667739 CCGCACGCTCGTTTCCTAGGTTGGCTTAG
130 CCGCACACCCATTTCATGGGTTGGCTTAG
31667768 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31667794 ACATACGAAG
Statistics
Matches: 393, Mismatches: 100, Indels: 17
0.77 0.20 0.03
Matches are distributed among these distances:
157 3 0.01
158 179 0.46
159 208 0.53
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGTTGTGACAGCAGGATCGATA
GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACC
CGCACACCCATTTCATGGGTTGGCTTAG
Found at i:31667805 original size:26 final size:26
Alignment explanation
Indices: 31667769--31667819 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
31667759 TTGGCTTAGG
* *
31667769 CATACGGAGTTCA-TTCCATGTCTAAA
1 CATACGAAGTTAATTTCCA-GTCTAAA
31667795 CATACGAAGTTAATTTCCAGTCTAA
1 CATACGAAGTTAATTTCCAGTCTAA
31667820 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTAATTTCCAGTCTAAA
Found at i:31669838 original size:158 final size:154
Alignment explanation
Indices: 31669385--31669884 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 154
31669375 CCCAGTCTAA
* * * *
31669385 GCATAC-GAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGTAGGATGA-C
* ** * * * * *
31669448 AGCACACAGAAGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTCAGCCGACTGAGCAC
63 AGCACTCAGGGGGGATCGGGC-GATCCCCGACTTGTGCATTCTGCCTCTTC-GCTGGCTGAGCAC
* *
31669513 CCGCACGCCCGTTTCATGGGTTGGCTTAG
126 CCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * *
31669542 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGACTGAGGATTGTGGCA-TCAGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCAGAC-GAGGGTTGCGGCAGT-AGGA-TGA
* * * * * *
31669605 CAGCACGT-AGAGGGGGACCGGGCCGATCCCCGACTTGTGGATTATGCCTCTTCGGTCGGTTCAG
62 CAGCAC-TCAG-GGGGGATCGGG-CGATCCCCGACTTGTGCATTCTGCCTCTTCGCT-GGCTGAG
* ** * *
31669669 CGCCCGCACGCTCATTTTGTGGGTTGACTTAT
123 CACCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
31669701 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGTAGGA-TGAC
* *
31669765 AGCACTCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCTGCTGGCTGAACAC
63 AGCACTCAGGGGGGATCGGG-CGATCCCCGACTTGTGCATTCTGCCTCTTC-GCTGGCTGAGCAC
*
31669830 CCGCACGCTCATTTCATGGGTTGGCCTAG
126 CCGCACGCTCATTTCATGGGTTGGCTTAG
*
31669859 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31669885 ACATACGAAG
Statistics
Matches: 270, Mismatches: 56, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
157 12 0.04
158 135 0.50
159 117 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGTAGGATGACAGC
ACTCAGGGGGGATCGGGCGATCCCCGACTTGTGCATTCTGCCTCTTCGCTGGCTGAGCACCCGCA
CGCTCATTTCATGGGTTGGCTTAG
Found at i:31670628 original size:26 final size:26
Alignment explanation
Indices: 31670591--31670643 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31670581 GTTGACTTAG
31670591 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
31670617 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31670643 G
1 G
31670644 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31670909 original size:159 final size:158
Alignment explanation
Indices: 31670653--31671266 Score: 608
Period size: 159 Copynumber: 3.9 Consensus size: 158
31670643 GATCGGATCA
* * * *
31670653 GACCGAGGGTTACGGCAGCAGGTTCGACAGCACGTAGAGGGGGATCGGACCGATCCCTGGCTTGC
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCC-GGCTTGC
* * * * *
31670718 GCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
65 GCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
**
31670783 GAGTTCATTCCATGTCTAATCTCCAGTTG
130 GAGTTCATTCCATGTCTAATCTCCAGCCG
* * * * * * * * *
31670812 GATCGAGGGTAGTGGCAGCGGGAACGGCAGCATGCAGAGGGGGACCGGGCCGATGCCCGGCTTAC
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGAT-CCCGGCTTGC
* * * * * * *
31670877 GCATTATGCCTCTCCGGTCGGCTCAGTGCCCGCATGCTCGTTTCATGGGCTGACTTTGGCATACG
65 GCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
** ** *
31670942 GAGTTCATTCCCA-GTCTAAGATTGAACCG
130 GAGTTCATT-CCATGTCTAATCTCCAGCCG
* * *
31670971 GACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGC
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGAT-CCCGGCTTGC
* * * * *
31671035 GCATTCTGCCTCTTTGGTCGGCTGAGCGTCCG-TTCGCTCGTTTCGTTGGTTGGCTTAGGCATAC
65 GCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCAT-GCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
31671099 AGAGTTCATTCCATGTCTAAACCCCAACCG
129 GGAGTTCATTCCATGTCTAATCTCCAGCCG
* * ** * *
31671129 GATCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGATCAGGCTC-ATCCTCGGCTTA
1 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGC-CGATCC-CGGCTTG
* * * * * * *
31671193 CGTATTATGCCTCTCCGATCGGTTGAGTGCCCGCACT-CTCGTTTCATGGGTTGACTTAGGCATA
64 CGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCA-TGCTCGTTTCGTGGGTTGGCTTAGGCATA
31671257 CGGAGTTCAT
128 CGGAGTTCAT
31671267 CCCTAGTCTA
Statistics
Matches: 363, Mismatches: 83, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
157 4 0.01
158 128 0.35
159 223 0.61
160 7 0.02
161 1 0.00
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCGGCTTGCG
CATTATGCCTCTTCGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAATCTCCAGCCG
Found at i:31671193 original size:317 final size:317
Alignment explanation
Indices: 31670617--31671774 Score: 942
Period size: 317 Copynumber: 3.6 Consensus size: 317
31670607 CCCAGTCTAA
* * * * * * *
31670617 GCATACGTAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCAGGTTCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* ** * * * *
31670682 GCACGTAGAGGGGGATCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCAC
66 GCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGAATTCTGCCTCTTCGACCGGCTGAGCGC
** * *
31670747 CCGCAT-GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCTCCAGTT
131 CCGC-TCGCCCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGTT
* * *
31670811 GGATCGAGGGTAGTGGCAGCGGGAACGGCAGCATGCAGAGGGGGACCGGGC-CGATGCCCGGCTT
195 GGATCGAGGGTTGTGGCAGCGGGAACGGCAGCACGCAGAGGGGGATCGGGCTC-AT-CCCGGCTT
*
31670875 ACGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGCATGCTCGTTTCATGGGCTGACTTTG
258 ACGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGCATGCTCGTTTCATGGGTTGACTTTG
* *
31670935 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * ** *
31671000 GCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGTCGGCTGAGCGT
66 GCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGAATTCTGCCTCTTCGACCGGCTGAGCGC
* * * ***
31671064 CCGTTCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAACCG
131 CCGCTCGCCCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGTTG
* * * *
31671129 GATCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGATCAGGCTCATCCTCGGCTTAC
196 GATCGAGGGTTGTGGCAGCGGGAACGGCAGCACGCAGAGGGGGATCGGGCTCATCC-CGGCTTAC
* * * * *
31671194 GTATTATGCCTCTCCGATCGGTTGAGTGCCCGCACT-CTCGTTTCATGGGTTGACTTAG
260 GCATTATGCCTCTCCGGTCGGCTCAGTGCCCGCA-TGCTCGTTTCATGGGTTGACTTTG
* ** *** * ** * *
31671252 GCATACGGAGTTCA-TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG-ACCGA
1 GCATACGGAGTTCATTCCC-AGTCTAAG-AT--TGA-ACCGGACCGAGGGT--TA-CGGCAGC-A
* * ** * * * * *
31671315 GGGTTACGGCAGCAGGATCGGCAGCACGCAGGA--GGGATCGGGTCGATCC--CTGGCTTACGAA
57 -GGAT-C-G-A-CAGCA-C-GCAG-A-GGGGGATCGGG-TC-GATC--CCCGGCTTGC-GA--AT
* ** * * * ** * *
31671376 TTTTGC-C-TC-TCCGACCG-GCTGAGCGCTCGCACACCCGTTTCATGGGTTGGCTTAGGCATAA
106 TCTGCCTCTTCGACCGGCTGAGC-GCCCGCTCG----CCCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * *
31671437 AGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGTAGTGGGACCGACAGCACGC
166 AGAGTTCATTCCATGTCTAAACCCCAGTTGGATCGAGGGTTGTGGCAGCGGGAACGGCAGCACGC
* * * * * * * * *
31671502 AGAGGTGGATCGGGCTGATCCCCAGCTTGCACATTATGCCTCTTCAGTTGGCTCAGTGCTCGCAT
231 AGAGGGGGATCGGGCTCAT-CCCGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGCAT
*
31671567 GCTCGTTTCGTGGGTTGACTTAT-
295 GCTCGTTTCATGGGTTGACTT-TG
* * * * *
31671590 GCATGCGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * *
31671655 ACACGCAGAGGGGGATCGGGTTGATCCTCGGCTTGCGAATTCTGCCTCTTCGATCGGCTGAACGC
66 GCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGAATTCTGCCTCTTCGACCGGCTGAGCGC
* * *
31671720 CCGCCCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCTCGCCCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
31671775 GCATACGGAG
Statistics
Matches: 644, Mismatches: 148, Indels: 96
0.73 0.17 0.11
Matches are distributed among these distances:
316 7 0.01
317 226 0.35
318 111 0.17
319 4 0.01
320 4 0.01
321 9 0.01
322 21 0.03
323 5 0.01
324 11 0.02
325 4 0.01
326 4 0.01
327 2 0.00
328 2 0.00
329 5 0.01
330 3 0.00
331 7 0.01
332 5 0.01
333 4 0.01
334 27 0.04
335 2 0.00
336 3 0.00
337 7 0.01
338 165 0.26
339 6 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGAATTCTGCCTCTTCGACCGGCTGAGCGC
CCGCTCGCCCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGTTG
GATCGAGGGTTGTGGCAGCGGGAACGGCAGCACGCAGAGGGGGATCGGGCTCATCCCGGCTTACG
CATTATGCCTCTCCGGTCGGCTCAGTGCCCGCATGCTCGTTTCATGGGTTGACTTTG
Found at i:31671276 original size:159 final size:158
Alignment explanation
Indices: 31670656--31671774 Score: 607
Period size: 159 Copynumber: 6.9 Consensus size: 158
31670646 CGGATCAGAC
** * * * *
31670656 CGAGGGTTACGGCAGCAGGTTCGACAGCACGTAGAGGGGGATC-GGAC-CGATCCCTGGCTTGCG
1 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CAGG-CTCGATCCC-GGCTTACG
* * * ** * * * *
31670719 CATTCTGCCTCTTCGGCCGGCTGAGCACCCGCA-TGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
63 CATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACT-CTCGTTTCATGGGTTGACTTAGGCATACG
* * ***
31670783 GAGTTCATTCCATGTCTAATCTCCAGTTGGAT
127 GAGTTCATCCCATGTCTAAACTCCAACCGGAT
* * * * *
31670815 CGAGGGTAGTGGCAGCGGGAACGGCAGCATGCAGAGGGGGACCGGGC-CGATGCCCGGCTTACGC
1 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CAGGCTCGAT-CCCGGCTTACGC
* * *
31670879 ATTATGCCTCTCCGGTCGGCTCAGTGCCCGCA-TGCTCGTTTCATGGGCTGACTTTGGCATACGG
64 ATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACT-CTCGTTTCATGGGTTGACTTAGGCATACGG
** *
31670943 AGTTCATTCCCA-GTCTAAGA-TTGAACCGGAC
128 AGTTCA-TCCCATGTCTAA-ACTCCAACCGGAT
* * * * * *
31670974 CAAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACAGGCTCGAT-CCCGGCTTACGCA
* ** * * ** * * * * *
31671038 TTCTGCCTCTTTGGTCGGCTGAGCGTCCGTTCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAG
65 TTATGCCTCTCCGGTCGGCTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* *
31671103 TTCATTCCATGTCTAAACCCCAACCGGAT
130 TTCATCCCATGTCTAAACTCCAACCGGAT
* *
31671132 CGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGATCAGGCTC-ATCCTCGGCTTACGT
1 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CAGGCTCGATCC-CGGCTTACGC
* *
31671196 ATTATGCCTCTCCGATCGGTTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGA
64 ATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
31671261 GTTCATCCC-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
129 GTTCATCCCAT-GTCT-A--A-AC----TCCA--ACC-G-----GAT
* *** ** * * *
31671307 CGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAG-GAGGGATC-GGGTCGATCCCTGGCT
1 C-GA-GGGTTGTGGCAGCA---GGATCGGCAGCACGCAGAGGGGGA-CAGGCTCGATCCC-GGCT
* * ** * * * * *
31671370 TACGAATTTTGCCTCTCCGACCGGCTGAGCGCTCGCACACCCGTTTCATGGGTTGGCTTAGGCAT
59 TACGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCAT
** * * * *** *
31671435 AAAGAGTTCATTCCATGTCTAAGCCCCAGTTGGAC
124 ACGGAGTTCATCCCATGTCTAAACTCCAACCGGAT
* ** * * * * * * *
31671470 CGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAGGTGGATCGGGCT-GATCCCCAGCTTGCAC
1 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CAGGCTCGAT-CCCGGCTTACGC
* * * * * * * *
31671534 ATTATGCCTCTTCAGTTGGCTCAGTGCTCGCA-TGCTCGTTTCGTGGGTTGACTTATGCATGCGG
64 ATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACT-CTCGTTTCATGGGTTGACTTAGGCATACGG
*** *
31671598 AGTTCATTCCCA-GTCTAAGA-TTGGACCGGAC
128 AGTTCA-TCCCATGTCTAA-ACTCCAACCGGAT
* * * * * * * * *
31671629 CGAGGGTTGCGACAGCAAGATCGACAACACGCAGAGGGGGATC-GGGTTGATCCTCGGCTTGCGA
1 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CAGGCTCGATCC-CGGCTTACGC
* * * ** * * * *
31671693 ATTCTGCCTCTTCGATCGGCTGAACGCCCGCCCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
64 ATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGA
*
31671758 GTTCATTCCATGTCTAA
129 GTTCATCCCATGTCTAA
31671775 GCATACGGAG
Statistics
Matches: 726, Mismatches: 188, Indels: 92
0.72 0.19 0.09
Matches are distributed among these distances:
157 8 0.01
158 145 0.20
159 404 0.56
160 25 0.03
161 4 0.01
162 3 0.00
163 5 0.01
167 2 0.00
168 1 0.00
169 2 0.00
170 1 0.00
171 2 0.00
175 5 0.01
176 3 0.00
177 7 0.01
178 6 0.01
179 86 0.12
180 17 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACAGGCTCGATCCCGGCTTACGCAT
TATGCCTCTCCGGTCGGCTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
TCATCCCATGTCTAAACTCCAACCGGAT
Found at i:31671282 original size:26 final size:26
Alignment explanation
Indices: 31671252--31671304 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31671242 GTTGACTTAG
31671252 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
31671278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31671304 G
1 G
31671305 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31671422 original size:179 final size:180
Alignment explanation
Indices: 31671127--31671458 Score: 447
Period size: 179 Copynumber: 1.9 Consensus size: 180
31671117 AAACCCCAAC
* ** * *
31671127 CGGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGATCAGGCTCATCCTCGGCTT
1 CGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGAGGGATCAGGCTCATCCTCGGCTT
* * * * * *
31671192 ACGTATTATGCCTCTCCGATCGGTTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATA
66 ACGAATTATGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATA
**
31671257 CGGAGTTCATCCC-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
131 AAGAGTTCATCCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
*
31671307 CGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAG-GAGGGATC-GGGTCGATCC-CTGGC
1 CGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGAGGGATCAGGCTC-ATCCTC-GGC
* * *
31671369 TTACGAATTTTGCCTCTCCGACCGGCTGAGCGCTCGCACACCCGTTTCATGGGTTGGCTTAGGCA
64 TTACGAATTATGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCA
*
31671434 TAAAGAGTTCATTCCATGTCTAAGC
129 TAAAGAGTTCATCCCATGTCTAAGC
31671459 CCCAGTTGGA
Statistics
Matches: 131, Mismatches: 18, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
178 5 0.04
179 90 0.69
180 36 0.27
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (180 bp):
CGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGAGGGATCAGGCTCATCCTCGGCTT
ACGAATTATGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATA
AAGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
Found at i:31671601 original size:338 final size:340
Alignment explanation
Indices: 31670935--31671616 Score: 836
Period size: 338 Copynumber: 2.0 Consensus size: 340
31670925 GCTGACTTTG
*
31670935 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATT--A-CGGACCAAGGGTTACGGCAGCAGGATCGACA
* * * ** **
31671000 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGTCGGCTGAGCGTC
63 GCACGCAGGAGGGACCGGGTCGATCCCCGGCTTACGAATTCTGCCTCTCCGACCGGCTGAGCGTC
** * * * * *
31671065 CGTTCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAACCGG
128 CGCACACCCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAACCCCAACCGG
* * ** * * *
31671130 ATCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGATCAGGCTCATCCTCGGCTTACG
193 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCTCATCCCCAGCTTACA
* * * *
31671195 TATTATGCCTCTCCGATCGGTTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGG
258 CATTATGCCTCTCAGATCGGCTCAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGG
31671260 AGTTCA-TCCCTAGTCTAA
323 AGTTCATTCCC-AGTCTAA
* *
31671278 GCATACGGAGTTCATTCCCAGTCTAAGA-T-CGGACCGAGGGTTACGGCAGCAGGATCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTACGGACCAAGGGTTACGGCAGCAGGATCGACAGCA
* * *
31671341 CGCAGGAGGGATCGGGTCGATCCCTGGCTTACGAATTTTGCCTCTCCGACCGGCTGAGCG-CTCG
66 CGCAGGAGGGACCGGGTCGATCCCCGGCTTACGAATTCTGCCTCTCCGACCGGCTGAGCGTC-CG
* ***
31671405 CACACCCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGTTGGAC
130 CACACCCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAACCCCAACCGGAC
* ** * * * *
31671470 CGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAGGTGGATCGGGCTGATCCCCAGCTTGCACA
195 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCTCATCCCCAGCTTACACA
* * * * *
31671535 TTATGCCTCTTCAG-TTGGCTCAGTGCTCGCA-TGCTCGTTTCGTGGGTTGACTTATGCATGCGG
260 TTATGCCTC-TCAGATCGGCTCAGTGCCCGCACT-CTCGTTTCATGGGTTGACTTAGGCATACGG
31671598 AGTTCATTCCCAGTCTAA
323 AGTTCATTCCCAGTCTAA
31671616 G
1 G
31671617 ATTGGACCGG
Statistics
Matches: 288, Mismatches: 47, Indels: 13
0.83 0.14 0.04
Matches are distributed among these distances:
337 2 0.01
338 250 0.87
339 7 0.02
342 1 0.00
343 28 0.10
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (340 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTACGGACCAAGGGTTACGGCAGCAGGATCGACAGCA
CGCAGGAGGGACCGGGTCGATCCCCGGCTTACGAATTCTGCCTCTCCGACCGGCTGAGCGTCCGC
ACACCCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAACCCCAACCGGACC
GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCTCATCCCCAGCTTACACAT
TATGCCTCTCAGATCGGCTCAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAA
Found at i:31671785 original size:26 final size:26
Alignment explanation
Indices: 31671749--31671801 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31671739 GTTGGCTTAG
31671749 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31671775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31671801 G
1 G
31671802 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31672841 original size:26 final size:26
Alignment explanation
Indices: 31672812--31672864 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31672802 GTTGACTTAG
* *
31672812 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31672838 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31672864 G
1 G
31672865 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31679362 original size:26 final size:26
Alignment explanation
Indices: 31679326--31679378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31679316 GTTGGCTTAG
*
31679326 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
31679352 GCATACGGAGTTCATTCGAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
31679378 G
1 G
31679379 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:31680078 original size:26 final size:26
Alignment explanation
Indices: 31680049--31680101 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31680039 GTTGACATAG
* *
31680049 GCATCCAAAGTTTATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
31680075 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
31680101 G
1 G
31680102 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:31680559 original size:158 final size:158
Alignment explanation
Indices: 31680192--31680575 Score: 391
Period size: 159 Copynumber: 2.4 Consensus size: 158
31680182 CCTTTTCGAT
* * *
31680192 TGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 TGGCTGAGCGCCCGCATGCTCGTTTCGT-GGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * * * * **
31680257 AGCCCCAATCGGACCGAGGGTTGTGCCAGTAGGACTGATAGCACACAGAGGGGGATTGAGCTGAT
65 AGACCAAATCAGACCGAGGGTTGTGACAGCAGGACTAATAGCACACAGAGGGGGACCGAGCTGAT
* *
31680322 CCCCAGCTTGCGCATTATGCCTCTCGAGT
130 CCCCAGCTTACGCATTATGCCTCTCGAGC
* * ** * * * *
31680351 TAGCTCAATGCCCGAATGCTCGTTTCATGGTTTGACTTAGGCATATGGAGTTCATTCCCA-GTCT
1 TGGCTGAGCGCCCGCATGCTCGTTTCGTGGTTAG-CTTAGGCATACGGAGTTCATT-CCATGTCT
** *
31680415 AAGACCAAATCAGACCGAGGGTTGTGACAGCAGGA-TCAATAGCACGTAG-GGGGGACCG-GGTC
64 AAGACCAAATCAGACCGAGGGTTGTGACAGCAGGACT-AATAGCACACAGAGGGGGACCGAGCT-
* * * *
31680477 GGTCCCCGGCTTATGCATTCTGCCTCTCTG-GC
127 GATCCCCAGCTTACGCATTATGCCTCTC-GAGC
* * *
31680509 TGGCTGAGCGCCCGCACGCTCATTTCGTAGGTTAGCTTAGGCAAACGGAGTTCATTCCATGTCTA
1 TGGCTGAGCGCCCGCATGCTCGTTTCGT-GGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTA
31680574 AG
65 AG
31680576 CATACGGAGT
Statistics
Matches: 181, Mismatches: 37, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.03
158 83 0.46
159 90 0.50
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
TGGCTGAGCGCCCGCATGCTCGTTTCGTGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GACCAAATCAGACCGAGGGTTGTGACAGCAGGACTAATAGCACACAGAGGGGGACCGAGCTGATC
CCCAGCTTACGCATTATGCCTCTCGAGC
Found at i:31680789 original size:26 final size:26
Alignment explanation
Indices: 31680759--31680811 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31680749 GTTGACTTAG
31680759 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
31680785 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31680811 G
1 G
31680812 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31681861 original size:26 final size:26
Alignment explanation
Indices: 31681825--31681877 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31681815 GTTGAGTTAG
31681825 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31681851 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31681877 G
1 G
31681878 ATCAGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31682204 original size:26 final size:26
Alignment explanation
Indices: 31682168--31682220 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31682158 GTTGGCTTAG
*
31682168 GCATACTGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
31682194 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
31682220 G
1 G
31682221 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:31682923 original size:26 final size:26
Alignment explanation
Indices: 31682888--31682940 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31682878 GTTGACTTAG
*
31682888 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31682914 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31682940 G
1 G
31682941 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31683390 original size:26 final size:26
Alignment explanation
Indices: 31683354--31683406 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31683344 GTTGACTTAG
*
31683354 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
* *
31683380 GCATACGGAGTTGAACCCCTGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
31683406 G
1 G
31683407 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:31683740 original size:159 final size:158
Alignment explanation
Indices: 31683399--31683745 Score: 369
Period size: 159 Copynumber: 2.2 Consensus size: 158
31683389 GTTGAACCCC
* *
31683399 TGTCTAAGATCTGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGAGACCGAG
1 TGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGCAGCACGCAAGGGAGACCGAG
* * ** * * * *
31683464 CCAATCCCTGGCTTGCGCATTCAGCCTCTTTGATCGGCTGAGCGCCCGCACACCCGTTTTGTGGG
66 CCAATCCCCGGCTTACGCATTCAGCCTCCCTGATCAGCTCAGCGCCCGCACACCCATTTCGTGGG
* * *
31683529 TTGGCTTAGGCATAGGGAGTTCATTCCA
131 TTGACTTAGGCATACGAAGTTCATTCCA
** * * * * *
31683557 TGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGC-GGAACCGGTAGCACGCAAAGGGGGACC
1 TGTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAGG-ACCGGCAGCACGC-AAGGGAGACC
* * * * * * *
31683620 GGGTCGATCCCCGGCTTATGCATT-ATGCCTCCCTGGTCAGCTCAGCGCCCGCACGCTCATTTCG
63 GAGCCAATCCCCGGCTTACGCATTCA-GCCTCCCTGATCAGCTCAGCGCCCGCACACCCATTTCG
31683684 TGGGTTGACTTAGGCATACGAAGTTCATTCCCA
127 TGGGTTGACTTAGGCATACGAAGTTCATT-CCA
*
31683717 -GTCTAAGATCAGACCGAACCGAGGGTTGC
1 TGTCTAAGATCAGACCGGACCGAGGGTTGC
31683746 AGCAGTAAGA
Statistics
Matches: 151, Mismatches: 32, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 42 0.28
159 104 0.69
160 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
TGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGCAGCACGCAAGGGAGACCGAG
CCAATCCCCGGCTTACGCATTCAGCCTCCCTGATCAGCTCAGCGCCCGCACACCCATTTCGTGGG
TTGACTTAGGCATACGAAGTTCATTCCA
Found at i:31683764 original size:159 final size:156
Alignment explanation
Indices: 31683399--31683881 Score: 375
Period size: 158 Copynumber: 3.1 Consensus size: 156
31683389 GTTGAACCCC
* * *
31683399 TGTCTAAGATCTGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGAGACCGAG
1 TGTCTAAGATCAGACCGGACCGAGGGTTGCG-CAG-AGGATCGGTAGCACGCAAGGGGGACCGAG
* * ** * * * *
31683464 CCAATCCCTGGCTTGCGCATTCAGCCTCTTTGATCGGCTGAGCGCCCGCACACCCGTTTTGTGGG
64 CCAATCCCCGGCTTACGCATTCAGCCTCCCTGATCAGCTCAGCGCCCGCACACCCATTTCGTGGG
* * *
31683529 TTGGCTTAGGCATAGGGAGTTCATTCCA
129 TTGACTTAGGCATACGAAGTTCATTCCA
** * * * *
31683557 TGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGAACCGGTAGCACGCAAAGGGGGACCG
1 TGTCTAAG-ATCAGACCGGACCGAGGGTTG-CGCAGAGG-ATCGGTAGCACGC-AAGGGGGACCG
* * * * * * *
31683621 GGTCGATCCCCGGCTTATGCATT-ATGCCTCCCTGGTCAGCTCAGCGCCCGCACGCTCATTTCGT
62 AGCCAATCCCCGGCTTACGCATTCA-GCCTCCCTGATCAGCTCAGCGCCCGCACACCCATTTCGT
31683685 GGGTTGACTTAGGCATACGAAGTTCATTCCCA
126 GGGTTGACTTAGGCATACGAAGTTCATT-CCA
* * * * * *
31683717 -GTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGTAAGATCGATAGCATGCAAGGGGAATCG-G
1 TGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAG-AGGATCGGTAGCACGCAAGGGGGACCGAG
** ** * * * * * * * *
31683780 TCCGGTCCTTGGCTTGCGCATTCTGCCTCTCC--AGCCGACTGAGCACCCGCACACTCGTTTCGT
64 -CCAATCCCCGGCTTACGCATTCAGCCTC-CCTGATCAG-CTCAGCGCCCGCACACCCATTTCGT
* * *
31683843 GGGTTGGCTTAGGCATATGGAGTTCATTCCA
126 GGGTTGACTTAGGCATACGAAGTTCATTCCA
31683874 TGTCTAAG
1 TGTCTAAG
31683882 CAGATGGAGT
Statistics
Matches: 255, Mismatches: 56, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 8 0.03
158 122 0.48
159 121 0.47
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
TGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGAGGATCGGTAGCACGCAAGGGGGACCGAGCC
AATCCCCGGCTTACGCATTCAGCCTCCCTGATCAGCTCAGCGCCCGCACACCCATTTCGTGGGTT
GACTTAGGCATACGAAGTTCATTCCA
Found at i:31684612 original size:26 final size:26
Alignment explanation
Indices: 31684576--31684628 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31684566 GTTGGCTTAG
31684576 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
31684602 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31684628 G
1 G
31684629 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31688369 original size:159 final size:156
Alignment explanation
Indices: 31687750--31688368 Score: 1051
Period size: 157 Copynumber: 3.9 Consensus size: 156
31687740 TTAAAATTTT
* * * *
31687750 ACCAAGTAATTAATTATTGGAAACTT-CTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAG
1 ACCAAGTAATTAATTA-TCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAG
* *
31687814 AAAATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTACAGAGGCTCCGTCGTC
65 AAAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTC
*
31687879 GGATTATTTAAAGAAAAATCAAGATCA
130 GGATTAATTAAAGAAAAATCAAGATCA
*
31687906 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
*
31687971 AAATTCCCTCATCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTTGCAGAGGCTCCGTCGTC
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCAC-TTGCAGAGGCTCCGTCGTC
31688036 GGATTAATTAAAGAAAAATCAAGATCA
130 GGATTAATTAAAGAAAAATCAAGATCA
*
31688063 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
31688128 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
*
31688193 GATTAATTAAAGAAAAAAAATCAAAATCA
131 GATTAATTAAAG---AAAAATCAAGATCA
* * *
31688222 GCCAAGTAATTAATTATCGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAAA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
*
31688287 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGTAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
31688352 GATTAATTAAAGAAAAA
131 GATTAATTAAAGAAAAA
31688369 AGAAAAAAAA
Statistics
Matches: 442, Mismatches: 16, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
155 7 0.02
156 132 0.30
157 153 0.35
159 150 0.34
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (156 bp):
ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
GATTAATTAAAGAAAAATCAAGATCA
Found at i:31688429 original size:8 final size:9
Alignment explanation
Indices: 31688408--31688440 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
31688398 GTCAAATAAA
31688408 AAAAAATTC
1 AAAAAATTC
31688417 AAAAAATTC
1 AAAAAATTC
31688426 AAAAAATTC
1 AAAAAATTC
31688435 AAAAAA
1 AAAAAA
31688441 AAAAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAAAATTC
Found at i:31688447 original size:18 final size:18
Alignment explanation
Indices: 31688405--31688449 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
31688395 AAAGTCAAAT
31688405 AAAAAAAAATTCAAAAAA
1 AAAAAAAAATTCAAAAAA
***
31688423 TTCAAAAAATTCAAAAAA
1 AAAAAAAAATTCAAAAAA
31688441 AAAAAAAAA
1 AAAAAAAAA
31688450 AAAAAAAAAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (18 bp):
AAAAAAAAATTCAAAAAA
Found at i:31688501 original size:5 final size:5
Alignment explanation
Indices: 31688478--31688520 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
31688468 GCTCGGATCG
* *
31688478 CGGCT CGGCT TGG-T GCGGCT CGGCT CGGCT TGGCT CGGCT CGG
1 CGGCT CGGCT CGGCT -CGGCT CGGCT CGGCT CGGCT CGGCT CGG
31688521 AGGGGCTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 1 0.03
5 30 0.94
6 1 0.03
ACGTcount: A:0.00, C:0.33, G:0.44, T:0.23
Consensus pattern (5 bp):
CGGCT
Found at i:31688503 original size:20 final size:20
Alignment explanation
Indices: 31688478--31688520 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
31688468 GCTCGGATCG
31688478 CGGCTCGGCTTGG-TGCGGCT
1 CGGCTCGGCTTGGCT-CGGCT
31688498 CGGCTCGGCTTGGCTCGGCT
1 CGGCTCGGCTTGGCTCGGCT
31688518 CGG
1 CGG
31688521 AGGGGCTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.00, C:0.33, G:0.44, T:0.23
Consensus pattern (20 bp):
CGGCTCGGCTTGGCTCGGCT
Found at i:31688527 original size:15 final size:15
Alignment explanation
Indices: 31688466--31688527 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
31688456 AAACCTGGAG
31688466 CGGCTCGGATCGCGGCT
1 CGGCTCGGA--GCGGCT
* *
31688483 CGGCTTGGTGCGGCT
1 CGGCTCGGAGCGGCT
***
31688498 CGGCTCGGCTTGGCT
1 CGGCTCGGAGCGGCT
*
31688513 CGGCTCGGAGGGGCT
1 CGGCTCGGAGCGGCT
31688528 GAAACGCGCG
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
15 29 0.81
17 7 0.19
ACGTcount: A:0.03, C:0.31, G:0.45, T:0.21
Consensus pattern (15 bp):
CGGCTCGGAGCGGCT
Found at i:31688764 original size:19 final size:19
Alignment explanation
Indices: 31688740--31688784 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
31688730 GAACGCCGGT
*
31688740 GCCGGATTCTGGAAATTTC
1 GCCGGAATCTGGAAATTTC
*
31688759 GCCGGAATCTGGGAATTTC
1 GCCGGAATCTGGAAATTTC
31688778 GCCGGAA
1 GCCGGAA
31688785 GTTGGCCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.24
Consensus pattern (19 bp):
GCCGGAATCTGGAAATTTC
Found at i:31688873 original size:31 final size:31
Alignment explanation
Indices: 31688835--31688907 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
31688825 AAACTGGGTC
*
31688835 TGTCGCCGGAAACTTC-AAAGTTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAG-TCGCCGGAAT
31688866 TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
*
31688897 TTTCGCCGGAA
1 TGTCGCCGGAA
31688908 TCTGGAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 35 0.90
32 4 0.10
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (31 bp):
TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
Found at i:31689331 original size:3 final size:3
Alignment explanation
Indices: 31689323--31689356 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
31689313 GATAATTAAA
31689323 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
31689357 GATAAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:31689496 original size:45 final size:41
Alignment explanation
Indices: 31689388--31689497 Score: 98
Period size: 41 Copynumber: 2.6 Consensus size: 41
31689378 CAAAAAAAAA
* *
31689388 AAATAATAATAATAATAAT-AAATATATAACTATATACATAT
1 AAATAATAATAA-AATAATAAAATAAATAAATATATACATAT
* ** *
31689429 AAAT-CTAATCTAATAAAAAAAATAAATAAATATATACATAAT
1 AAATAATAATAAAAT-AATAAAATAAATAAATATATACAT-AT
31689471 AATAATAATAATAAAATACATAAAATA
1 -A-AATAATAATAAAATA-ATAAAATA
31689498 CAAAAGAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
39 3 0.06
40 6 0.12
41 22 0.42
42 2 0.04
43 1 0.02
44 4 0.08
45 14 0.27
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (41 bp):
AAATAATAATAAAATAATAAAATAAATAAATATATACATAT
Found at i:31690687 original size:159 final size:158
Alignment explanation
Indices: 31690326--31690950 Score: 501
Period size: 158 Copynumber: 3.9 Consensus size: 158
31690316 AACTCCGCGT
* ** * * * * * * *
31690326 GCTTAGACGTGGAATGAACTCAGTATGCCTAAGCTAATCTACGAAAAGAGCGTGCGGGTGCTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * ** * * * * * *
31690391 TCAGCCAGAGAGGCAGAATGCGCAAGGTGAGGATTGGACCGGTCCCCC-CTGTGTGCTGTCGATC
66 TCGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATC
** * * * * *
31690455 CTGCTGCCGTAACCTTCAGTCCGGTCT-GA
130 CTGCTGCCACAACCCTCGGT-CTGACTAGG
* * * * * *
31690484 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * *
31690548 GTCGGTCGATGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGGT
65 GTCGGTCGA-GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT
* *
31690613 CCTGCTACCACAACCCTCGGTCT-AGCTGGG
129 CCTGCTGCCACAACCCTCGGTCTGA-CTAGG
* * * * *
31690643 GCTTAGGCATGGAATGAACTCCCTCTGCCTAAGCCAACACACGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCGCTCA
* * ** * * * * * *
31690707 GCCGGCTGGAGAGGCAGAATGCGCAAGATGGGGATCAGCCCGATCCCTC-CGGCATGCTGTCAAT
65 GTCGG-TCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT
** *
31690771 CCCACTGCCACAACCCTCGGTCTGACTATG
129 CCTGCTGCCACAACCCTCGGTCTGACTAGG
* ** * *
31690801 GCTTAGACATGGAATGAACT-CCTATGACTAAGCCAACCCATTAAACGGGCATGCAGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCA-GGCGCTCA
* * * *
31690865 GTCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCAATCCCCCT-TGCGTGCTACCGAT
65 GTCGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT
* *
31690929 CCTGCTGTCGCAACCCTCGGTC
129 CCTGCTGCCACAACCCTCGGTC
31690951 CGGTTCGATC
Statistics
Matches: 364, Mismatches: 90, Indels: 26
0.76 0.19 0.05
Matches are distributed among these distances:
157 30 0.08
158 215 0.59
159 115 0.32
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
TCGGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGGTCTGACTAGG
Found at i:31690989 original size:26 final size:26
Alignment explanation
Indices: 31690960--31691012 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
31690950 CCGGTTCGAT
31690960 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * * * *
31690986 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
31691012 C
1 C
31691013 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:31691365 original size:26 final size:26
Alignment explanation
Indices: 31691327--31691379 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31691317 CCGATCTAAT
31691327 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
31691353 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
31691379 C
1 C
31691380 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31691464 original size:367 final size:356
Alignment explanation
Indices: 31690774--31691657 Score: 940
Period size: 367 Copynumber: 2.4 Consensus size: 356
31690764 TGTCAATCCC
* * * *
31690774 ACTGCCACAACCCTCGGTCTGACTATGGCTTAGACATGGAATGAACTCC-TATGACTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGC--TGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * *
31690838 CCATTAAACGGGCATGCAGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGG
64 CCACGAAACGAGCATGCA-GGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGG
* * * * *
31690903 CCCAATCCCCCTTGCGTGCTACCGAT-C--CTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAA
128 CCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCTGTCGCAACCCTCGGTCCGATTCAATCTTAA
* * * *
31690965 ACTAGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAA
193 ACTAGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAA
* * * * * *
31691030 ATGAGCATGCGGGCGCTCAGTCGACCGGAGAGGCATAATGCACAAATAGGAGATCAGCCCGATCC
258 ATGAGCATACAGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAACAGGAGATCAGCCCGATCC
* *
31691095 CCCTCTGTGTGCTACCGATCCCGCTGC-AGGTCCT
323 CCCCCTGCGTGCTACCGATCCCGCTGCTA-GTCCT
31691129 ACTGCCACAACCCTCGGTCCGGCTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGCT--GGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * *
31691194 TGACGAAATGAGCATGCAGGCACTCAGTTGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGC
64 CCACGAAACGAGCATGCAGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGC
* *
31691259 CCGATCCCCCCTGCTTGCTGTCGATCCTGCTGCTCGTCCTACTGCCACAACCCTCGGTCCGA-TC
129 CCGATCCCCCCTGCGTGCTATCGATCCTGCTGCT-G---T-C-G---CAACCCTCGGTCCGATTC
* * *
31691323 TAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCC
185 -AATCTTAAACTAGGAATGAACTCCGTATGCTTAGA-ATGGGAATGAACTTCGTATGCCTAAGCC
* ** * * *
31691387 AACCCACAAAATGAGCGTACAGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGC-CGAGGAT
248 AACCCACAAAATGAGCATACAGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAACAGGA-GAT
** *
31691451 C-GACCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTGCTAGTCCT
312 CAG-CCCGATCCCCCCCTGCGTGCTACCGATCCCGCTGCTAGTCCT
* * * * * * * * *
31691496 GCTACTACAACCCTTGGTCCGGTCTGATCTTAGACTTGCAATGAGCTCCGTATGCCTAAGCTAAC
1 ACTGCCACAACCCTCGGTCCGG-CTGGT-TTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** * *
31691561 CCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCACAAGCCAAGGATCGGA
64 CCACGAAACGAGCATGCAGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGC
* *
31691626 TCGATCCCCCCTGCGTGTTATCGATCCTGCTG
129 CCGATCCCCCCTGCGTGCTATCGATCCTGCTG
31691658 TTACAACCCT
Statistics
Matches: 436, Mismatches: 71, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
353 1 0.00
355 106 0.24
356 27 0.06
358 5 0.01
359 1 0.00
362 1 0.00
363 1 0.00
364 1 0.00
366 7 0.02
367 282 0.65
368 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (356 bp):
ACTGCCACAACCCTCGGTCCGGCTGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCATGCAGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCC
GATCCCCCCTGCGTGCTATCGATCCTGCTGCTGTCGCAACCCTCGGTCCGATTCAATCTTAAACT
AGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATG
AGCATACAGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAACAGGAGATCAGCCCGATCCCCC
CCTGCGTGCTACCGATCCCGCTGCTAGTCCT
Found at i:31691867 original size:157 final size:156
Alignment explanation
Indices: 31691502--31692022 Score: 386
Period size: 157 Copynumber: 3.3 Consensus size: 156
31691492 TCCTGCTACT
* * * * * * *
31691502 ACAACCCTTGGTCCGGTCTGATCTTAGACTTGCAATGAGCTCCGTATGCCTAAGCTAACCCACGA
1 ACAACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACG-
* * * * * ** * * ** * *
31691567 AACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCACAAGCCAAGGATCGGA-TCGAT
65 AACGAGCATACGGGCACTGAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGGT
* * ** * **
31691631 CCCCCCTGCGTGTTATCGATC-CTGCTGTT
129 -CCCCCTGCATGCTGCCGATCGC-ACTGCC
* * ** * ** *
31691660 ACAACCCTTGGTCCAGTCTGATATTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG-
1 ACAACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * * * *
31691724 ACGAGCATACGGGCACTGAGCTGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCTGGTCC
66 ACGAGCATACGGGCACTGAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
* * *
31691789 CCCTTTGTATGCTGCCGGTCTCACTGCC
131 CCC--TGCATGCTGCCGATCGCACTGCC
* * * *
31691817 ACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCTAT
1 ACAACCCTCGGTCCGGTCT-GAGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCAC
* ** * * * * *
31691880 GAAACGGGTGTGCGGGCGCTTAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGG
64 G-AACGAGCATACGGGCACTGAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGG
* * *
31691945 TCCCCCTGCGTGCTGTCGATCGCACTGCT
128 TCCCCCTGCATGCTGCCGATCGCACTGCC
* *
31691974 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
1 ACAACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCATATGC
31692023 TTAGACTAGG
Statistics
Matches: 285, Mismatches: 68, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
155 7 0.02
156 47 0.16
157 117 0.41
158 59 0.21
159 55 0.19
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
ACAACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
ACGAGCATACGGGCACTGAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
CCCTGCATGCTGCCGATCGCACTGCC
Found at i:31692037 original size:26 final size:26
Alignment explanation
Indices: 31691996--31692048 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31691986 CCGGTCTGAT
31691996 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31692022 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
31692048 C
1 C
31692049 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31699180 original size:26 final size:26
Alignment explanation
Indices: 31699141--31699214 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
31699131 CATCCAATCA
*
31699141 TAGACTGGGAATGAACTATGTATGCT
1 TAGACTGGGGATGAACTATGTATGCT
*
31699167 TAGACTGGGGATGAACTCTGTATGCT
1 TAGACTGGGGATGAACTATGTATGCT
*
31699193 TAGACTGGGGATGAACTTTGTA
1 TAGACTGGGGATGAACTATGTA
31699215 CCCATGAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (26 bp):
TAGACTGGGGATGAACTATGTATGCT
Found at i:31699886 original size:524 final size:521
Alignment explanation
Indices: 31699313--31700284 Score: 1217
Period size: 524 Copynumber: 1.9 Consensus size: 521
31699303 GATCCTACTA
* ** * *
31699313 CCGCAACCCTCAGTTCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAT
1 CCGCAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCAAT
* * *
31699378 GAAATGAGCGTGCGAGCGTTGAGCCGGCCGGAGAGGCATAATAC-GTAAGCCAGGG-ATCGGCCC
66 GAAACGAGCGTGCGAGCGCTGAGCCAGCCGGAGAGGCATAATACAG-AAGCC-GGGCATCGGCCC
* *
31699441 -GATCCCCCTCTATG-TGCTGTCGATCCTGCTGCCGGTCCTGCCACCACAACCCTCAGTCCAG-C
129 AG-T--CCCTCTATGATGCTGTCGATCCCGCTGCCAGTCCTGCCACCACAACCCTCAGT-CAGAC
* * **
31699503 -TGGGGCTTAGACATGGAATGAA-TCCGTATGCCTAAGCCAAACCACAAAATGAGCG-TGCAAGC
190 TTAGGGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACAAGCGTTGCAAGC
* * * *
31699565 GCTCCATC-GGCCAGAGAGGCAGAATACGCAAGCGGCGGATTGGCCTGGTCCCTCCTGCGTGCTG
255 GCT-CAACAGGCCAGAGAGGCAGAATACGCAAGC-CCGAATTGGCCTGG-CCCCCCTGCGTGCTG
* * ** *
31699629 CCGAACCTATGCTGGTCCTACTGCCGCAACCCTTGGACCGATCCGATCTTAGATTGGGAATGAAC
317 CCGAACCTATACTGGTCCTACTACCGCAACCCTCAGACCGATCCGATC-TAGACT-GGAATGAAC
* *
31699694 TCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTCAGCC-AACCCACAAAACGAGCGTGCGA
380 TCCGTA-GCTTAGACAT-GAATGAACTCCATATGCCTAAGCCAAACCCACAAAACGAGCGTGCGA
31699758 GCACTTAGTCGGCTGGAGAGGCAAAATGCACAAGCCGGGGACCGACTCGGTCCCCCCTTACATGC
443 GCACTTAGTCGGCTGGAGAGGCAAAATGCACAAGCCGGGGACCGACTCGGTCCCCCCTTACATGC
31699823 TATCGATCTTGCTG
508 TATCGATCTTGCTG
*
31699837 CCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCAAT
1 CCGCAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCAAT
* * * *
31699902 GAAACGAGCGTGCGGGCGCTGAGCCAGTCGGAGAGGCATAATGCAGAAGCCGGGCATCGGCTCAG
66 GAAACGAGCGTGCGAGCGCTGAGCCAGCCGGAGAGGCATAATACAGAAGCCGGGCATCGGCCCAG
* * * ** * *
31699967 TCCCTTTTTGCATGCTGTCGATCCCGCTGCCAGTCCTGCTACCACAATTCTCGGTCTGACTTAGG
131 TCCCTCTATG-ATGCTGTCGATCCCGCTGCCAGTCCTGCCACCACAACCCTCAGTCAGACTTAGG
* * ** *
31700032 GCTTAGACATAGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTTGCAGGCGCTCA
195 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACAAGCGTTGCAAGCGCTCA
** * * * *
31700097 ACAGGCTGGAGAGGCAGAATGCGCAAGCCCGAATTGGCCTGGCCCCCCTGCGTTCTGTCGATCCT
260 ACAGGCCAGAGAGGCAGAATACGCAAGCCCGAATTGGCCTGGCCCCCCTGCGTGCTGCCGAACCT
* * * * ** *
31700162 GTACTGGTCCTGCTATCGCAACCCTCAGTCCGATTTGATCTAGACTGGAATGAACTCTGTAGCTT
325 ATACTGGTCCTACTACCGCAACCCTCAGACCGATCCGATCTAGACTGGAATGAACTCCGTAGCTT
** * *
31700227 AGACATGAATGAACTCCATATGCCTAAGCCAAACCCAGGAAACGGGCGTGCGGGCACT
390 AGACATGAATGAACTCCATATGCCTAAGCCAAACCCACAAAACGAGCGTGCGAGCACT
31700285 CAACCGGTCG
Statistics
Matches: 378, Mismatches: 59, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
521 22 0.06
522 40 0.11
523 19 0.05
524 153 0.40
525 71 0.19
526 42 0.11
527 31 0.08
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (521 bp):
CCGCAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCAAT
GAAACGAGCGTGCGAGCGCTGAGCCAGCCGGAGAGGCATAATACAGAAGCCGGGCATCGGCCCAG
TCCCTCTATGATGCTGTCGATCCCGCTGCCAGTCCTGCCACCACAACCCTCAGTCAGACTTAGGG
CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACAAGCGTTGCAAGCGCTCAA
CAGGCCAGAGAGGCAGAATACGCAAGCCCGAATTGGCCTGGCCCCCCTGCGTGCTGCCGAACCTA
TACTGGTCCTACTACCGCAACCCTCAGACCGATCCGATCTAGACTGGAATGAACTCCGTAGCTTA
GACATGAATGAACTCCATATGCCTAAGCCAAACCCACAAAACGAGCGTGCGAGCACTTAGTCGGC
TGGAGAGGCAAAATGCACAAGCCGGGGACCGACTCGGTCCCCCCTTACATGCTATCGATCTTGCT
G
Found at i:31699996 original size:159 final size:159
Alignment explanation
Indices: 31699702--31699997 Score: 344
Period size: 159 Copynumber: 1.9 Consensus size: 159
31699692 ACTCCGTATG
* * * * *
31699702 CTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACAAAACGAGCGTGCGAGCACTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCAACAAAACGAGCGTGCGAGCACTGAGC
* * *
31699767 CGGCTGGAGAGGCAAAATGCACAAGCCGGGGACCGACTCGGTCCCCCCTTACATGCTATCGATCT
66 CGGCTGGAGAGGCAAAATGCACAAGCCGGGCACCGACTCAGTCCCCCCTTACATGCTATCGATCC
*
31699832 TGCTGCCGCAACCCTCAGTCCGGTCCGAT
131 CGCTGCCGCAACCCTCAGTCCGGTCCGAT
* ** * *
31699861 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCAATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCAACAAAACGAGCGTGCGAGCACTGAG
* * * * * *** * *
31699925 CCAG-TCGGAGAGGCATAATGCAGAAGCCGGGCATCGGCTCAGTCCCTTTTTGCATGCTGTCGAT
65 CCGGCT-GGAGAGGCAAAATGCACAAGCCGGGCACCGACTCAGTCCCCCCTTACATGCTATCGAT
31699989 CCCGCTGCC
129 CCCGCTGCC
31699998 AGTCCTGCTA
Statistics
Matches: 111, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 2 0.02
159 109 0.98
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCAACAAAACGAGCGTGCGAGCACTGAGC
CGGCTGGAGAGGCAAAATGCACAAGCCGGGCACCGACTCAGTCCCCCCTTACATGCTATCGATCC
CGCTGCCGCAACCCTCAGTCCGGTCCGAT
Done.