Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 345 of 402
Found at i:31700957 original size:26 final size:26
Alignment explanation
Indices: 31700921--31700971 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31700911 CTAGTTCGAT
*
31700921 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
31700947 CTTAGACTGGGGATAAACTCTGTAT
1 CTTAGACTGGGAATAAACTCTGTAT
31700972 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:31701329 original size:26 final size:26
Alignment explanation
Indices: 31701300--31701352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31701290 CCAATCCGAT
31701300 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
31701326 CTTAGACATGGAATTAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31701352 C
1 C
31701353 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31701663 original size:159 final size:158
Alignment explanation
Indices: 31701325--31701828 Score: 509
Period size: 159 Copynumber: 3.2 Consensus size: 158
31701315 AACTCCGTAT
* * *
31701325 GCTTAGACAT-GGAATTAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCA
* * * ** * * * * *
31701389 ACCGGCTGGAGAGGCAGAATGCGCAAGTCAAGGACCGGGCCGATCCCCTCGCTGCGTGATGTCGA
65 ACCAGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGATCCCC-C-CTACGTGCTGTCGA
* *
31701454 TCCTGCTGTCATAACCCTCTGTCCGATCT-GA
128 TCCTGCTGCCATAACCCTCGGTCCGA-CTGGA
** ** *
31701485 TG-TTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACTGACAAAATGAGCGTGCGAGCGCTCA
1 -GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCA
* * * * *
31701549 GCCAGCCGGAGAGGTAGAATGAGCAAGTCGGGGATTAGCCCGGTCCCCCTCTACGTGCTGCCGAT
65 ACCAGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGATCCCCC-CTACGTGCTGTCGAT
* *
31701614 CCTGCTGCCACAACCCTCGGTCCGACTGGG
129 CCTGCTGCCATAACCCTCGGTCCGACTGGA
* * * * * *
31701644 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGAGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCA
* *
31701708 ACCAGCCGGAGAGGCAGAATGCA-CAAG-CTGGGGATCAGCCCGATCCCCCCTACTTGCTATCGA
65 ACCAGCCGGAGAGGCAGAATG-AGCAAGTC-GGGGATCAGCCCGATCCCCCCTACGTGCTGTCGA
* * * *
31701771 TCCTGCTACCGTAACCCTTGGTCCAGTCT-GA
128 TCCTGCTGCCATAACCCTCGGTCC-GACTGGA
*
31701802 TCTTAGACTGGGAATGAACTCCGTATG
1 GCTTAGACTGGGAATGAACTCCGTATG
31701829 TTTAAACTGG
Statistics
Matches: 281, Mismatches: 54, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 59 0.21
159 130 0.46
160 90 0.32
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAA
CCAGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCCATAACCCTCGGTCCGACTGGA
Found at i:31702791 original size:171 final size:171
Alignment explanation
Indices: 31702472--31702793 Score: 394
Period size: 171 Copynumber: 1.9 Consensus size: 171
31702462 CCTTTGCGTG
* * ***
31702472 CTGTCGATCCCGCTCCCACAACCCTCGGTCCGGTTGGGGCTTAGACTTGGAATGAACTCCCTATG
1 CTGTCGATCCAGCTCCCACAACCCTCGGTCCGGCTGGGGCTTAGACAAAGAATGAACTCCCTATG
*** * * * *
31702537 CCTAAGTTGACCCACGAAACGGGCGTGCGGGTGCTCAGCTGATCGAAAAGGCAGAATGCGTAAGC
66 CCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCTGACCGAAAAGGCAGAATGCGTAAGC
*
31702602 CGGGGATCAGCCCGATCCCCCTCTATGTGCTGTAAATCCTA
131 CAGGGATCAGCCCGATCCCCCTCTATGTGCTGTAAATCCTA
* * ** * *
31702643 CTGTCGGTCCAGCTGCCACAACGTTCGGTCGGGCTGGGGCTTAGACAAAGAATGAACTCCGTATG
1 CTGTCGATCCAGCTCCCACAACCCTCGGTCCGGCTGGGGCTTAGACAAAGAATGAACTCCCTATG
* * * *
31702708 CCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTTAGCTGGCCGAAGAGGCAGAATG-GATAAG
66 CCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCTGACCGAAAAGGCAGAATGCG-TAAG
* * *
31702772 TCAGGGATCGGCTCGATCCCCC
130 CCAGGGATCAGCCCGATCCCCC
31702794 CTGCGTGCTA
Statistics
Matches: 124, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
170 1 0.01
171 123 0.99
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (171 bp):
CTGTCGATCCAGCTCCCACAACCCTCGGTCCGGCTGGGGCTTAGACAAAGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCTGACCGAAAAGGCAGAATGCGTAAGC
CAGGGATCAGCCCGATCCCCCTCTATGTGCTGTAAATCCTA
Found at i:31702881 original size:26 final size:26
Alignment explanation
Indices: 31702852--31702904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31702842 CTGGTTCGAT
*
31702852 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31702878 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31702904 C
1 C
31702905 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31703976 original size:157 final size:158
Alignment explanation
Indices: 31703656--31703998 Score: 422
Period size: 157 Copynumber: 2.2 Consensus size: 158
31703646 TGGCTCAAAC
*
31703656 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * ** *
31703721 CCAACCGGAGATGCAGAATGCACTAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCTATC
66 CCAACCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATC
* * * * *
31703786 CCGCTGCCACAACCCTCGGTTCGGTTGG
131 CCGCTACCACAACCCTCGATCCAGTTGA
* * * * *
31703814 GCTTAGACAT-GGAAT-AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCA
1 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
*** ** *
31703877 GCCGGTCGGAGAGGCAAAATGCGGAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTACCGAT
65 GCCAACCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGAT
* *
31703941 CCTGCTACCGCAACCCTCGATCCAGTTCGA
130 CCCGCTACCACAACCCTCGATCCAGTT-GA
31703971 TCTTAGACTGGGAATGAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
31703999 TTAGACTGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
156 36 0.23
157 94 0.61
158 23 0.15
159 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCAACCGGAGAGGCAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATC
CCGCTACCACAACCCTCGATCCAGTTGA
Found at i:31704008 original size:26 final size:26
Alignment explanation
Indices: 31703972--31704024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31703962 CCAGTTCGAT
31703972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
31703998 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31704024 C
1 C
31704025 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31704560 original size:106 final size:106
Alignment explanation
Indices: 31704363--31704553 Score: 251
Period size: 106 Copynumber: 1.8 Consensus size: 106
31704353 CCGATCTAAT
* * ** * * *
31704363 CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTAACT
*
31704428 CAACTGGAGAGGCATAATGCGCAAGTCCCCCTCTCTGTATG
66 CAACTGGAGAGGCAGAATGCGCAAGTCCCCCTCTCTGTATG
* * *
31704469 CTTAGACAT-GGAATTAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCT-AA
31704533 CTC-ACTGGAGAGGCAGAATGC
64 CTCAACTGGAGAGGCAGAATGC
31704554 TTAAGTCAGG
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
106 68 0.94
107 4 0.06
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (106 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTAACT
CAACTGGAGAGGCAGAATGCGCAAGTCCCCCTCTCTGTATG
Found at i:31704715 original size:266 final size:263
Alignment explanation
Indices: 31704201--31704720 Score: 677
Period size: 266 Copynumber: 2.0 Consensus size: 263
31704191 AATGAACTCC
* * *
31704201 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAACGAGCGTGCGAGTGC
1 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGTGC
* * *
31704266 TCAGCCGATCGGAGAGGCAGAATGCGTAAGTAGGGATCGGATCGGTCCCCCCTGCGTGCTGTCGA
66 TCAACCGATCGGAGAGGCAGAATGCGTAAGTAGGGATCGGATCGATCCCCCCTGCGTGATGTCGA
*
31704331 TCCTACTGTCGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAGGT
131 TCCTACTGTCGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * ** * * ** *
31704396 CAACCCATGAAACGAGCGTTCGGGTGCTGAGTCAACTGGAGAGGCATAATGCGCAAGTCCCCCTC
196 CAACCCACGAAACGAGCGTGCGAGCACTCAGCCAACCAGAGAGGCAGAATGCGCAAGTCCCCCTC
31704461 TCT
261 TCT
* * * *
31704464 GTATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTACGGGTGC
1 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGTGC
* * *
31704529 TCAACTC-A-CTGGAGAGGCAGAATGCTTAAGTCAGGGACTGGGCT-GATCCCCTCGCTGCGTGA
66 TCAAC-CGATC-GGAGAGGCAGAATGCGTAAGT-AGGGA-TCGGATCGATCCCC-C-CTGCGTGA
* * *
31704591 TGTCGATCCTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
125 TGTCGATCCTACTGTCGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
31704656 CTAAGTTAACCGACGAAACTAGCGTGCGAGCACTCAGCCGACCAGAGAGGTAGAATGCGCAAGTC
190 CTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAACCAGAGAGGCAGAATGCGCAAGTC
31704721 AGGGATTGGC
Statistics
Matches: 219, Mismatches: 32, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
262 1 0.00
263 83 0.38
264 12 0.05
265 5 0.02
266 118 0.54
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (263 bp):
GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGTGC
TCAACCGATCGGAGAGGCAGAATGCGTAAGTAGGGATCGGATCGATCCCCCCTGCGTGATGTCGA
TCCTACTGTCGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGAGCACTCAGCCAACCAGAGAGGCAGAATGCGCAAGTCCCCCTC
TCT
Found at i:31704801 original size:159 final size:158
Alignment explanation
Indices: 31704638--31704933 Score: 378
Period size: 159 Copynumber: 1.9 Consensus size: 158
31704628 TCTTAGACTG
* * ** * * *
31704638 GGAATGAACTCCGTATGCCTAAGTTAACCGACGAAACTAGCGTGCGAGCACTCAGCC-GACCAGA
1 GGAATGAACTCCCTATACCTAAGCCAACCCAAGAAACGAGCGTGCGAGCACTCAGCCAG-CCAGA
* * * * * * **
31704702 GAGGTAGAATGCGCAAGTCAGGGATTGGCCCGGTCCCCCTCTGCGTGCTACCGGTCCTGCTACCA
65 GAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCACTGCGTGCTACCAATCCTGCTACCA
31704767 CAACCCTCGGTCCAGCTGGGGCTTAGATAT
129 CAACCCTCGGTCCAGCTGGGGCTTAGATAT
* * *
31704797 GGAATGAACTCCCTATACCTAAGCCAACCCAAGAAACGGGCGTGCGGGCACTCAGCCAGCCGGAG
1 GGAATGAACTCCCTATACCTAAGCCAACCCAAGAAACGAGCGTGCGAGCACTCAGCCAGCCAGAG
* * *
31704862 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCACTGCGTGCTACCAATCCTGTTGCCACA
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCACTGCGTGCTACCAATCCTGCTACCACA
31704927 ACCCTCG
131 ACCCTCG
31704934 ATCTGGTCTA
Statistics
Matches: 115, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 34 0.30
159 80 0.70
160 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.16
Consensus pattern (158 bp):
GGAATGAACTCCCTATACCTAAGCCAACCCAAGAAACGAGCGTGCGAGCACTCAGCCAGCCAGAG
AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCACTGCGTGCTACCAATCCTGCTACCACA
ACCCTCGGTCCAGCTGGGGCTTAGATAT
Found at i:31706037 original size:11 final size:11
Alignment explanation
Indices: 31706017--31706049 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
31706007 CAGTTAGGCT
31706017 CTCCGATGATG
1 CTCCGATGATG
*
31706028 CTCCGGTGATG
1 CTCCGATGATG
31706039 CTCCGATGATG
1 CTCCGATGATG
31706050 GTGCCCCGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.27
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:31706447 original size:157 final size:157
Alignment explanation
Indices: 31706120--31706460 Score: 373
Period size: 157 Copynumber: 2.2 Consensus size: 157
31706110 GCTCAAACTT
* *
31706120 TTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCC
1 TTAGACTGGGAATGAAC-TTCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCC
* * * * ** * *
31706185 AACCGGAGATGCAGAATGCACTAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCTATCCC
65 AACCGGAGAGGCAAAATACACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCCC
* * * * *
31706250 GCTGCCACAACCCTCGGTTCGGTTGGGC
130 GCTACCACAACCCTCGATCCAGTTGAGC
* * **
31706278 TTAGACAT-GGAAT-AACTCTCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAGC
1 TTAGAC-TGGGAATGAACT-TCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
*** * *
31706341 CGGTCGGAGAGGCAAAATACAGAAGCCAGGGATCGGCCCGGTCCCCC-CTGCATGCTACCGATCC
64 CAACCGGAGAGGCAAAATACACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCC
* * *
31706405 TGCTACCGCAACCCTCGATCCAGTTCGATC
129 CGCTACCACAACCCTCGATCCAGTT-GAGC
31706435 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTC-TATGC
31706461 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
156 36 0.24
157 93 0.62
158 20 0.13
159 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTTCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCA
ACCGGAGAGGCAAAATACACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCCCG
CTACCACAACCCTCGATCCAGTTGAGC
Found at i:31706463 original size:26 final size:26
Alignment explanation
Indices: 31706434--31706486 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31706424 CCAGTTCGAT
31706434 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
31706460 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
31706486 C
1 C
31706487 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:31707015 original size:106 final size:106
Alignment explanation
Indices: 31706825--31707021 Score: 254
Period size: 106 Copynumber: 1.9 Consensus size: 106
31706815 CCGATCCAAT
* * ** * * *
31706825 CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTAACT
* *
31706890 CAACTGGAGAGGCATAATGCGCAAGTCCCCCTCTCTGTATG
66 CAACTGGAGAGGCAGAATGCGAAAGTCCCCCTCTCTGTATG
* *
31706931 CTTAGACAT-GGAATTAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCT-AA
*
31706995 CT-GACTGGAGAGGCAGAATGCGAAAGT
64 CTCAACTGGAGAGGCAGAATGCGAAAGT
31707022 TGGGGACTGG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 74 0.96
107 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (106 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTAACT
CAACTGGAGAGGCAGAATGCGAAAGTCCCCCTCTCTGTATG
Found at i:31707166 original size:265 final size:263
Alignment explanation
Indices: 31706663--31707181 Score: 666
Period size: 265 Copynumber: 2.0 Consensus size: 263
31706653 AATGAACTCC
* * *
31706663 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAATGAACGTGCGGGTGC
1 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAACGTACGGGTGC
* * * * *
31706728 TCAGCCGATCGAAGAGGCAGAATGCGTAAGTAGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGA
66 TCAACCGATCGAAGAGGCAGAATGCGAAAGTAGGGATCGGCGCGATCCCCCCTGCGTGATGTCGA
* * *
31706793 TCCTATTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGGT
131 TCCTACTGTCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * ** * * * *
31706858 CAACCCATGAAACGAGCGTTCGGGTGCTGAGTCAACTGGAGAGGCATAATGCGCAAGTCCCCCTC
196 CAACCCACGAAACAAGCGTGCGAGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGTCCCCCTC
31706923 TCT
261 TCT
* *
31706926 GTATGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGTGC
1 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAACGTACGGGTGC
* * *
31706991 TCAACTGA-CTGGAGAGGCAGAATGCGAAAGTTGGGGA-CTGG-GCGATCCCCTCGCTGCGTGAT
66 TCAACCGATC-GAAGAGGCAGAATGCGAAAG-TAGGGATC-GGCGCGATCCCC-C-CTGCGTGAT
* ***
31707053 GTCGATCCTGCTGTCACAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCC
126 GTCGATCCTACTGTCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
31707118 TAAGTTAACCGACGAAACAAGCGTGCGAGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGTC
191 TAAGTCAACCCACGAAACAAGCGTGCGAGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGTC
31707182 AGGGATTGGC
Statistics
Matches: 217, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
262 1 0.00
263 92 0.42
264 8 0.04
265 116 0.53
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (263 bp):
GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAACGTACGGGTGC
TCAACCGATCGAAGAGGCAGAATGCGAAAGTAGGGATCGGCGCGATCCCCCCTGCGTGATGTCGA
TCCTACTGTCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACAAGCGTGCGAGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGTCCCCCTC
TCT
Found at i:31707224 original size:159 final size:158
Alignment explanation
Indices: 31707057--31707433 Score: 418
Period size: 159 Copynumber: 2.4 Consensus size: 158
31707047 CGTGATGTCG
*
31707057 ATCCTGCTGTCACAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 ATCCTGCTGCCACAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * *
31707122 TTAACCGACGAAACAAGCGTGCGAGCACTCAGCC-GACCGGAGAGGTAGAATGCGCAAGTCAGGG
66 CCAACCCACGAAACAAGCGTGCGAGCACTCAGCCAG-CCGGAGAGGCAGAATGCGCAAGCCAGGG
* * * * *
31707186 ATTGGCCCGGTCCCCCTCTGCGTGCTACCG
130 ATCGACCCGAT-CCCCACTGCGTGCTACCA
* * * ** * *
31707216 GTCCTGCTGCCACAACCCTCGGTCC-AGCTGGGGCTTAGACAT-GGAATGAACTCCCTATACCTA
1 ATCCTGCTGCCACAACCCTCGGTCCGA-TTTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
** * * *
31707279 AGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGG
64 AGCCAACCCACGAAACAAGCGTGCGAGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGG
31707344 GATCGACCCGATCCCCACTGCGTGCTACCA
129 GATCGACCCGATCCCCACTGCGTGCTACCA
* * * * * * * *
31707374 ATCCTGTTGCCACAACCCTCGATCTGGTCTGATCTTAGATTGGGAATAAACTCTGTATGC
1 ATCCTGCTGCCACAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGC
31707434 TTAGGCTGGG
Statistics
Matches: 175, Mismatches: 38, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.01
158 59 0.34
159 113 0.65
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
ATCCTGCTGCCACAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAACAAGCGTGCGAGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGA
TCGACCCGATCCCCACTGCGTGCTACCA
Found at i:31707950 original size:184 final size:183
Alignment explanation
Indices: 31707616--31707984 Score: 443
Period size: 184 Copynumber: 2.0 Consensus size: 183
31707606 TCCGACTGGG
* * * * * **
31707616 GCTTAGACATGGAATGAGCTCTGATGCCTAAGCCATCCCACAAAATGAGCGTACGGGCGCTCAGT
1 GCTTAGACATGGAATGAACTCCGATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAAC
* * * *
31707681 CGGCCGGAGAGGCAGAATACGCAAGTCGAGGATTGACCCGATCACCCCTGCGTGCTATCGATCCT
66 CGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCACCCCTACGTGCTATCGATCCT
* * * *
31707746 GCTGCTGCAACCGTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTAT
131 ACTGCTGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* ** ** *
31707799 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGATGCTCAA
1 GCTTAGACATGGAATGAACTCCG-ATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAA
* * * * * * * *
31707864 CCGACCGGAGAGGTAGAATGCGCTAGCCGGGGATCGACCTGGTCTCCCCTACGTGCTATCGATCT
65 CCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCACCCCTACGTGCTATCGATCC
*
31707929 TACTG-TCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
130 TACTGCT-GCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
31707983 GC
1 GC
31707985 CTAAGTCAAC
Statistics
Matches: 154, Mismatches: 30, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
183 21 0.14
184 133 0.86
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAAC
CGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCACCCCTACGTGCTATCGATCCT
ACTGCTGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:31708155 original size:159 final size:157
Alignment explanation
Indices: 31707799--31708244 Score: 457
Period size: 159 Copynumber: 2.8 Consensus size: 157
31707789 AACTCCGTAT
* * * *
31707799 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGATGCTC-A
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG--GCACTA
* * * * * * * * *
31707863 ACCGACCGGAGAGGTAGAATGCGCTAGCCGGGGATCGACCTGGTCTCCCCTACGTGCTATCGATC
64 AGCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
* ** * * *
31707928 TTACTGTCGCAACCCTCGGTCTGATCCGA
129 CTACTACCACAACCCTCAGTCTGATCAGA
* *
31707957 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAA
* * * *
31708021 GTCGACCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTACCGGT
65 G-CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTACCGAT
* * *
31708086 CCTGCTACCACAACCCTCAGTTTGA-CTAGG
128 CCTACTACCACAACCCTCAGTCTGATC-AGA
* * * * * *
31708116 GCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAG
* * * * *
31708181 CCAGTCGGAGAGGCAAAATGCACGAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATC
66 CGA-CCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
31708245 TTGCTGTCGT
Statistics
Matches: 237, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 106 0.45
159 124 0.52
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAG
CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCT
ACTACCACAACCCTCAGTCTGATCAGA
Found at i:31709035 original size:26 final size:26
Alignment explanation
Indices: 31708997--31709047 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31708987 GGCTCAAACT
**
31708997 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACACGGAATGAACTCCATATG
31709023 CTTAGACACGGAATGAACTCCATAT
1 CTTAGACACGGAATGAACTCCATAT
31709048 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCATATG
Found at i:31709376 original size:26 final size:26
Alignment explanation
Indices: 31709340--31709392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31709330 CTGGTTCGAT
*
31709340 CTTAGACTAGGAATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
31709366 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31709392 C
1 C
31709393 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31709490 original size:184 final size:182
Alignment explanation
Indices: 31709181--31709745 Score: 612
Period size: 196 Copynumber: 3.0 Consensus size: 182
31709171 TTTGGCTAGG
* * * * *
31709181 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACA-GGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGTGTGCGGGTGCTCAG
* *
31709246 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTCCGTGCTGCCAATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC-GTCCCCCCTGCGTGCTGCCAATCC
*
31709311 TACTGTCGCAACCCTCGGTCTGGT-TCGATCTTAGACTAGGAATGAGCTCCGTAT
129 TACTGTCGCAACCCTCGGTCTGGTCT-GATCTTAGACTAGGAATGAACTCCGTAT
* * *
31709365 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGAC-AGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGTGTGCGGGTGCTCAG
* * * * * * *
31709430 TCGGCCAGAAAGGCAAAATACGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGCCAATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG-TCCCCCCTGCGTGCTGCCAAT-C
* * * *
31709495 TGCTACTGGTCCTACTGCCATAAGCCTCGATCCGGTCTGATCTTAGACT-GTGAATGAACTCTGT
128 --CTACT-G---T-C-G-C--AACCCTCGGTCTGGTCTGATCTTAGACTAG-GAATGAACTCCGT
31709559 AT
181 AT
* *
31709561 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCATAAAACGAGTGTGCGGCTGCTCAG
1 GCTTAGAC-AGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGTGTGCGGGTGCTCAG
* * * * * *
31709626 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCCCGTCCCCCTTGTGTGCTGTCGATCCT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTGCGTGCTGCCAATCCT
* ** ** * *
31709691 GCTACCATAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATTAACTCTGTAT
130 ACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
31709744 GC
1 GC
31709746 CTAAGTCAAC
Statistics
Matches: 315, Mismatches: 49, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
183 42 0.13
184 109 0.35
185 2 0.01
187 6 0.02
188 1 0.00
191 1 0.00
192 5 0.02
193 1 0.00
194 2 0.01
195 18 0.06
196 127 0.40
197 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (182 bp):
GCTTAGACAGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGTGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTGCGTGCTGCCAATCCTA
CTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:31709565 original size:26 final size:26
Alignment explanation
Indices: 31709546--31709597 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31709536 CTTAGACTGT
*
31709546 GAATGAACTCTGTATGCTTAGACAAG
1 GAATGAACTCCGTATGCTTAGACAAG
*
31709572 GAATGAACTCCGTATGCCTAAGACAA
1 GAATGAACTCCGTATG-CTTAGACAA
31709598 CCCATAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGACAAG
Found at i:31710030 original size:26 final size:26
Alignment explanation
Indices: 31710001--31710053 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31709991 CCGGTCTGAT
*
31710001 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
31710027 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
31710053 C
1 C
31710054 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:31710765 original size:26 final size:26
Alignment explanation
Indices: 31710736--31710788 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31710726 CCGGTCCGAT
*
31710736 CTTAGAC-TGGGAATGAATTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
31710762 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
31710788 C
1 C
31710789 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:31711847 original size:158 final size:155
Alignment explanation
Indices: 31711645--31712086 Score: 456
Period size: 159 Copynumber: 2.8 Consensus size: 155
31711635 GTGCGCAGGT
* * *
31711645 GCTCAGCCGGTCGGAGAGGCAGAATGCATAAACCGAGGACCGACTCGGTCCCCCCTGCATGCTGT
1 GCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCG-GGATCGACTCGGTCCCCCCTGCATGCTGT
*
31711710 CGATCCTACTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTA
65 CGATCCTACTACCACAACCCTCGGTCC-GTCTGATCTTAGACT-GGAATGAACTCCGTATACCTA
* * * *
31711775 AGTCAACCCATAAAAAGATCGTACGGGC
128 AGCCAAACCATAAAAAGAGCATACGGGC
* * * * * * * * *
31711803 GCTGAGCCGATCGGAGAGGCATAATGCACAAGCCAGGGATCGACTCGATCTCTCTCTACGTGTTG
1 GCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCC-GGGATCGACTCGGTC-CCCCCTGCATGCTG
* * * ** *
31711868 TCGGTGCC-GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACC
64 TCGAT-CCTACTACCACAACCCTCGGTCCGTCT-GATCTTAGAC-TGGAATGAACTCCGTATACC
* * * *
31711932 TAAGCCAAACCATGAAACGGGCATGCGGGC
126 TAAGCCAAACCATAAAAAGAGCATACGGGC
** * *
31711962 GCTCAATCGGTCGGAGAGGCAGAATGCACAAGCGGGGGATCAGCCT-GGTCCCCCCTGCATGCTG
1 GCTCAGCCGGTCGGAGAGGCAGAATGCACAAGC-CGGGATC-GACTCGGTCCCCCCTGCATGCTG
** *
31712026 TCGATCCTACTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
64 TCGATCCTACTACCACAACCCTCGGTCC-GTCTGATCTTAGACT-GGAATGAACTCCGTAT
31712087 GCTTAGACTG
Statistics
Matches: 225, Mismatches: 49, Indels: 20
0.77 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 97 0.43
159 119 0.53
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
GCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGATCGACTCGGTCCCCCCTGCATGCTGTC
GATCCTACTACCACAACCCTCGGTCCGTCTGATCTTAGACTGGAATGAACTCCGTATACCTAAGC
CAAACCATAAAAAGAGCATACGGGC
Found at i:31712091 original size:26 final size:26
Alignment explanation
Indices: 31712062--31712117 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
31712052 CCGGTCCGAT
31712062 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
31712088 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
31712114 CTTA
1 CTTA
31712118 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31712784 original size:26 final size:25
Alignment explanation
Indices: 31712745--31712796 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
31712735 GGCTCAAAAT
31712745 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
31712770 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
31712796 C
1 C
31712797 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:31713137 original size:26 final size:26
Alignment explanation
Indices: 31713085--31713137 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
31713075 CCGGTTCGAT
*
31713085 CTTAGACTGGGAATGAACTCCGGATG
1 CTTAGACTGGGAATGAACACCGGATG
* * * *
31713111 CTTAGATTGGGGATGTACACCGTATG
1 CTTAGACTGGGAATGAACACCGGATG
31713137 C
1 C
31713138 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGGATG
Found at i:31714095 original size:26 final size:26
Alignment explanation
Indices: 31714066--31714118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31714056 CTGGTAGGAT
*
31714066 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
31714092 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
31714118 C
1 C
31714119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:31715183 original size:26 final size:26
Alignment explanation
Indices: 31715142--31715192 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
31715132 CTGGTTTGAT
31715142 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
31715168 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
31715193 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:31715783 original size:26 final size:26
Alignment explanation
Indices: 31715746--31715797 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31715736 CGATCCGATG
31715746 TTAGACTAGGAATGAAC-TCTGTATGC
1 TTAGACTAGGAATGAACTTC-GTATGC
31715772 TTAGAC-ATGGAATGAACTTCGTATGC
1 TTAGACTA-GGAATGAACTTCGTATGC
31715798 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.88
27 2 0.08
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTTCGTATGC
Found at i:31715807 original size:395 final size:391
Alignment explanation
Indices: 31714983--31715853 Score: 1108
Period size: 392 Copynumber: 2.2 Consensus size: 391
31714973 TTTGGCTGAG
* *
31714983 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGACCGCTC-A
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGTGACCGCTCAA
* * * * * * *
31715047 GCAGGCCAAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCTCCCCTGCGTGCTACCGATC
65 TC-GGCCAAAGAGGTAGAATACACAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTACCAATC
* * *
31715112 CTGCTACCGCAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTA
129 CTGCTACCACAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTA
* * * ***
31715177 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCCTGTAAGTGCTCAGTTGGTCAGAA
194 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAAGCGCTCAGCCAGTCAGAA
* ** **
31715242 AGGCCGACTGAAGAGGCAGAATGTGCAAGCTGGGGACCAGCCCGATCCCCCTACGTGCTATCGAT
259 AGGCCGACTAAAGAGGCAGAATGCACAAGCCAGGGACCAGCCCGATCCCCCTACGTGCTATCGAT
* * *
31715307 CCTGCTGCTGGTCCTACTGCCATAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCG
324 CCTACTGCTGGTCCTACTGACATAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCCG
31715372 TAT
389 TAT
* * *
31715375 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGTGACCGCTCAA
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGTGACCGCTCAA
* *
31715440 TCGGCCAAAGAGGTAGAATACACAAGCTAGGGATTGGCCCGATCCCCCCTGCGTGCTGCCAATCC
65 TCGGCCAAAGAGGTAGAATACACAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTACCAATCC
* *
31715505 TG-TAGCCATAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCTGTATATGCTTAGAC
130 TGCTA-CCACAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATA--CTTAGAC
* **
31715569 TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTC-G
192 TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAAGCGCTCAGCCAGTCAG
* * * *
31715633 AAGAGGTCGA-TCAAAGAGGCAGAATGCATAAGCCAGGGATCAG-CCGAGTCCCTCCTATGTGCT
257 AA-AGGCCGACT-AAAGAGGCAGAATGCACAAGCCAGGGACCAGCCCGA-TCCC-CCTACGTGCT
* * * * *
31715696 ATCGATCCTACTGCTGGTCTTACT-ACAGTAACCCTCGGTTCGATCCGATGTTAGACTAGGAATG
318 ATCGATCCTACTGCTGGTCCTACTGACA-TAACCCTCAGTCCAATCCGATCTTAGACTAGGAATG
*
31715760 AACTCTGTAT
382 AACTCCGTAT
* *
31715770 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACTCACGAAACGAGCGTGTGGA-CGCTCA
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACG-GCGTGT-GACCGCTCA
* * **
31715834 GTCGACCGGAGAGGTAGAAT
64 ATCGGCCAAAGAGGTAGAAT
31715854 GCTCAAGTCG
Statistics
Matches: 412, Mismatches: 56, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
391 2 0.00
392 159 0.39
393 10 0.02
394 98 0.24
395 141 0.34
396 2 0.00
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (391 bp):
GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGCGTGTGACCGCTCAAT
CGGCCAAAGAGGTAGAATACACAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTACCAATCCT
GCTACCACAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTAGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAAGCGCTCAGCCAGTCAGAAAG
GCCGACTAAAGAGGCAGAATGCACAAGCCAGGGACCAGCCCGATCCCCCTACGTGCTATCGATCC
TACTGCTGGTCCTACTGACATAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTA
T
Found at i:31716148 original size:159 final size:156
Alignment explanation
Indices: 31715770--31716240 Score: 444
Period size: 159 Copynumber: 3.0 Consensus size: 156
31715760 AACTCTGTAT
* * * *
31715770 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACTCACGAAACGAGCGTGTGGACGCTCAG
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
31715835 TCGACCGGAGAGGTAGAATGCTCAAGTCGGGGACCGGCCTAGGTCCCTCCTGCATGCTGTTGATC
65 CCGATCGGAGAGGCAGAATGCGCAAG-CCGGGATCGGCC-AGGTCCCCCCTGCGTGCTATCGATC
* *
31715900 TTGCTACCGCAACCCTCGATCTGGTCCGA
128 TCGCTACCGCAACCCTCGATCTGGACCGA
* * * * * ** * * *
31715929 TCCTAGACTGGAAGTGAACTCTGTATGCCTAAGTCAACCCATAAAATGAGCGTTCGGGCGCTGAG
1 GCTTAGAATGGAA-TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
31715994 CCGATCGGAGAGGCATAATGAGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGGTC
65 CCGATCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCAGGTCCCCC-CTGCGTGCTATCGATC
* * *
31716059 TCGCTACCACAACCCTCGATC-GGACTGGG
128 TCGCTACCGCAACCCTCGATCTGGAC-CGA
* * *
31716088 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
31716153 CC-AGTCGGAAGAGGCAGAATGCGTAAGCCGGAGATCGGCCTGGTCCCCCCTGTGTGCTATCGAT
65 CCGA-TCGG-AGAGGCAGAATGCGCAAGCCGG-GATCGGCCAGGTCCCCCCTGCGTGCTATCGAT
*
31716217 C-CTGCTATCGCAACCCTCGATCTG
127 CTC-GCTACCGCAACCCTCGATCTG
31716241 CTTCAATCTT
Statistics
Matches: 246, Mismatches: 56, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
158 18 0.07
159 190 0.77
160 38 0.15
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCAGGTCCCCCCTGCGTGCTATCGATCTCG
CTACCGCAACCCTCGATCTGGACCGA
Found at i:31716284 original size:26 final size:26
Alignment explanation
Indices: 31716248--31716300 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31716238 CTGCTTCAAT
31716248 CTTAAACTGGGAATAAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
* * *
31716274 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
31716300 C
1 C
31716301 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:31716574 original size:355 final size:355
Alignment explanation
Indices: 31716061--31716722 Score: 785
Period size: 355 Copynumber: 1.9 Consensus size: 355
31716051 TATCGGTCTC
* *
31716061 GCTACCACAACCCTCGATCGGACTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
31716126 CCACGAAACGGGCGTGCGGGCGCTCAACCAGTCGGAAGAGGCAGAATGCGTAAGCCGGAGATCGG
66 CAACAAAACGAGCGTGCAGGCGCTCAACCAGCCGGAAGAGGCAAAATGCGTAAGCCGGAGATCAG
* * * * * * * *
31716191 CCTGGTCCCCCCTGTGTGCTATCGATCCTGCTATCGCAACCCTCGA-TCTGCTTCAATCTTAAAC
131 CCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCATCGATTCAG-TTCAATCATAAAC
* * * *
31716255 TGGGAATAAACTCCATATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCTACAAAA
195 TGGGAATAAACTCCATATGCTTAGACAT-GGAATGAACTCCATATGCCAAAGCCAACCCACAAAA
** * * * *
31716319 TGAGCATGCGGGCACTGAGTCGGTCGGAGAGGCATAATGCATAAGCCGGGATCATCTCGGTCCCC
259 TGAGCATGCGGGCACACAATCGGTCGGACAGGCAGAATACATAAGCCGGGATCATCTCGGTCCCC
31716384 TTGTGCATGCTATCGATCTCACTGCCGGTCCT
324 TTGTGCATGCTATCGATCTCACTGCCGGTCCT
* *
31716416 GCTACCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCAGTATGCCTAAGCCA
1 GCTACCACAACCCTCGAT-CAGACTGGGGCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCA
* * * * * ** *
31716480 ACTAACAAAATGAGTGTGCAGGTGCTCAGCTGGCCGG-AGAGGCAAAATGTGTAAGCC-GAGGAT
64 ACCAACAAAACGAGCGTGCAGGCGCTCAACCAGCCGGAAGAGGCAAAATGCGTAAGCCGGA-GAT
* * * ** *
31716543 CAGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGTTGCCACAACCATCGATTCAGTTTGATCATAG
128 CAGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCATCGATTCAGTTCAATCATAA
* * * * *
31716608 ACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCAAAGCCAACCCACGAA
193 ACTGGGAATAAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACAAA
* * *
31716673 ATGAGCGTGCGGGCGCACAATCGGTCGGACAGGCAGAATACGTAAGCCGG
258 ATGAGCATGCGGGCACACAATCGGTCGGACAGGCAGAATACATAAGCCGG
31716723 AAATCGACTT
Statistics
Matches: 251, Mismatches: 51, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
354 2 0.01
355 205 0.82
356 44 0.18
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (355 bp):
GCTACCACAACCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CAACAAAACGAGCGTGCAGGCGCTCAACCAGCCGGAAGAGGCAAAATGCGTAAGCCGGAGATCAG
CCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCATCGATTCAGTTCAATCATAAACT
GGGAATAAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACAAAATG
AGCATGCGGGCACACAATCGGTCGGACAGGCAGAATACATAAGCCGGGATCATCTCGGTCCCCTT
GTGCATGCTATCGATCTCACTGCCGGTCCT
Found at i:31718152 original size:26 final size:26
Alignment explanation
Indices: 31718123--31718173 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31718113 TGACTTAGGG
*
31718123 ATACAGAGTTTATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
* *
31718149 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
31718174 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:31719006 original size:195 final size:196
Alignment explanation
Indices: 31718648--31719040 Score: 452
Period size: 195 Copynumber: 2.0 Consensus size: 196
31718638 GTTGGCTTAG
* * ** * * * *
31718648 GCATACGGAGTTCATTCCTAGTCTAATATCGGACTGGACTGAGGGTTGCAGCAGTAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCAGCAGCAGAACCAGCA
* * ** *
31718713 GCAGGATCAACAGCACGTGGGGGGGACTGAACTGATCCCCGACTTGCACATTCTGCCTTTCCGAC
66 GCAGGATCAACAGCACGTAGGGGGGACCGAACCAATCCCCGACTTGCACATTCTGCCTCTCCGAC
* * * *
31718778 CGGTTGAGTGCCCGCACGTCCGTTTCCTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
131 CGGTTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
31718843 A
196 A
* *
31718844 GCATACGGAGTTCATTCCCAGTCTAGGATCAAACCGGACTGAGGGTTGC-GATAGCAGAACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCAG-CAGCAGAACCAGC
* ** * ** * *
31718908 A-CAGGATCGACAGCACGTAGGGGGGACCGGGCCAATTCGGGGCTTGCGCATTCTGCCTCTCC-A
65 AGCAGGATCAACAGCACGTAGGGGGGACCGAACCAATCCCCGACTTGCACATTCTGCCTCTCCGA
* * * *
31718971 GCCTGTTGAGCGCCTGCACG-CTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCTATGT
130 -CCGGTTGAGCGCCCGCACGTC-CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
31719035 CTAA
193 CTAA
31719039 GC
1 GC
31719041 CCCAGTCAGA
Statistics
Matches: 163, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
194 2 0.01
195 108 0.66
196 53 0.33
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (196 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCAGCAGCAGAACCAGCA
GCAGGATCAACAGCACGTAGGGGGGACCGAACCAATCCCCGACTTGCACATTCTGCCTCTCCGAC
CGGTTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
A
Found at i:31719393 original size:26 final size:26
Alignment explanation
Indices: 31719343--31719395 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31719333 GTTGGCTGAG
*
31719343 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
31719369 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
31719395 G
1 G
31719396 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:31719896 original size:26 final size:26
Alignment explanation
Indices: 31719866--31719915 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
31719856 GTTAACTTAG
31719866 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
31719892 GCATACATAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
31719916 GATTGATGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31727100 original size:26 final size:26
Alignment explanation
Indices: 31727064--31727116 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31727054 GTTGACTTAG
31727064 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
31727090 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
31727116 G
1 G
31727117 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:31727601 original size:158 final size:158
Alignment explanation
Indices: 31727090--31727760 Score: 611
Period size: 158 Copynumber: 4.2 Consensus size: 158
31727080 CCTAGTCTAA
* * * * * *
31727090 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAG-TGCGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTAACAGCAG-GATCGAC
* * * * * *
31727154 AGCATGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGC
65 AGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
* * *
31727219 CCGCACACCCGTTTCGTAGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** ** * *
31727248 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCGGGATCGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCAAGGGTTGTAACAGCAGGATCGA
* ** * * * *
31727311 CAGCACACAGAGGGGGACCAGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGATCGGCTCAGT
64 CAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGC
* * *
31727376 GCCCGTATGCTCG--TCGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
31727405 GCATACGGAGTTCATTCCCAGTCTAATATCAGATTGGACCAAGGGTTGTAACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTAACAGCAGGATCGACA
* * * * * *
31727470 GCACGCAGGGGGGATC-GATCCGATCCCTGGCTTGCGCATTCTGCCTCTCTG-GCAGATTGAGCG
66 GCACGCAGGGGGGACCAGGT-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC-GACTGAGCG
31727533 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
31727563 GCATACGGAGCTCATTCCCAATCTAAGATCGGACTGGACCAAGGGTTGCGGCATCAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTT---G--T----A--A-CA
* * *
31727628 GCAGGATCGACAGCACGTAGGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
54 GCAGGATCGACAGCACGCA-GGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * * * *
31727693 TCGACCGAGCGCCTGTACGCTCATTTTGTGGGTTGGCTTAG
118 TCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
31727734 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
31727761 CATACAGAGT
Statistics
Matches: 414, Mismatches: 73, Indels: 39
0.79 0.14 0.07
Matches are distributed among these distances:
155 3 0.01
156 51 0.12
157 69 0.17
158 112 0.27
159 59 0.14
161 1 0.00
163 1 0.00
167 1 0.00
169 1 0.00
170 22 0.05
171 91 0.22
172 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTAACAGCAGGATCGACA
GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31727763 original size:26 final size:26
Alignment explanation
Indices: 31727734--31727786 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31727724 GTTGGCTTAG
31727734 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
31727760 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31727786 G
1 G
31727787 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31727944 original size:196 final size:197
Alignment explanation
Indices: 31727563--31727955 Score: 538
Period size: 196 Copynumber: 2.0 Consensus size: 197
31727553 GTTGGCTTAG
* * *
31727563 GCATACGGAGCTCATTCCCAATCTAAGATCGGACTGGACCAAGGGTTGCGGCATCAGGACTAGCA
1 GCATACAGAGCTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGCATCAGGACTAGCA
* * * *
31727628 GCAGGATCGACAGCACGTAGGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
66 GCAGGATCGACAGCAAGCAGGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
* * * **
31727693 TCGACCGAGCGCCTGTACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
131 CCAACCGAGCGCCTGCACGCTCATTTTGTCAGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
31727758 AA
196 AA
* * * * *
31727760 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAAT-AGGACTAGC
1 GCATACAGAGCTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGC-ATCAGGACTAGC
* * * *
31727824 AGCAGGATCGACAGCAAGCA-GAGGGGATCGGGTCGATCCCTGGCTTACGCATTTTGTCTCTCTG
65 AGCAGGATCGACAGCAAGCAGGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCG
* * * *
31727888 ACCAACTGAGTGCCTGCATGCTCATTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
130 ACCAACCGAGCGCCTGCACGCTCATTTTGTCAGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
31727953 TAA
195 TAA
31727956 ACCCCAGCCG
Statistics
Matches: 170, Mismatches: 25, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
196 97 0.57
197 71 0.42
198 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (197 bp):
GCATACAGAGCTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGCATCAGGACTAGCA
GCAGGATCGACAGCAAGCAGGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
CCAACCGAGCGCCTGCACGCTCATTTTGTCAGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
AA
Found at i:31728138 original size:26 final size:26
Alignment explanation
Indices: 31728101--31728153 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31728091 GTTGACTTAG
31728101 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
31728127 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
31728153 G
1 G
31728154 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31728453 original size:158 final size:159
Alignment explanation
Indices: 31728161--31728787 Score: 583
Period size: 158 Copynumber: 4.0 Consensus size: 159
31728151 AAGATCGAAT
* * ** * * ** *
31728161 CGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAAGGGGGATCAAGCCGATCCCCGGCTTA
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
* * ** *
31728226 CGCATTCTGCCTCTCC-GACCGACTGAGTGCCCTGCATGCCCATTTAATGGGTTGGCTTAGTCAT
66 CGCATTCTGCCTCTCCAG-CCGACTGAGTGCCCTGCACGCCTATTTCGTGGGTTGGCTTAGGCAT
31728290 A-GGAGTTCATTCCATGTCTAAGCCATAGC
130 ACGGAGTTCATTCCATGTCTAAGCCATAGC
** * * * * *
31728319 CGGACCGAGGGTTGTGGCAGTGGGATCGACAGCATGCCGGGGGGATCGGGCTGATCCCCGTCTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
* * * *
31728384 CACATTCTGCCTCTCCAGCCGGCTGAGTGCTC-GCACGCCTATTTCGTGTGTTGGCTTAGGCATA
66 CGCATTCTGCCTCTCCAGCCGACTGAGTGCCCTGCACGCCTATTTCGTGGGTTGGCTTAGGCATA
* * **
31728448 GGGAGTTCATTCCATGCCTAAGCCCCAGC
131 CGGAGTTCATTCCATGTCTAAGCCATAGC
** * * * *
31728477 TAGACCGAGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTT
* * * * * * *
31728542 GCGCATTATGCCTCATCGA-CTGACTCAGTG-CCTGCACG-CTCGTTTCGTGGGTTGACTTATGC
65 GCGCATTCTGCCTC-TCCAGCCGACTGAGTGCCCTGCACGCCT-ATTTCGTGGGTTGGCTTAGGC
*
31728604 ATACGGAGTTCATTCC-TAGTCTAAG--ATCGGAC
128 ATACGGAGTTCATTCCAT-GTCTAAGCCAT-AG-C
* * * * **
31728636 CGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGTCCAATCCTCACCTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
** ** * * *
31728701 CGCATTCTGCCTCTCTGGCCGACTGAGCACCC-GCACGCTCT-TTTCGTAGATTAGCTTAGGCAT
66 CGCATTCTGCCTCTCCAGCCGACTGAGTGCCCTGCACGC-CTATTTCGTGGGTTGGCTTAGGCAT
* *
31728764 ACTGAGTTCATTCCACGTCTAAGC
130 ACGGAGTTCATTCCATGTCTAAGC
31728788 ACGCGGAGTT
Statistics
Matches: 373, Mismatches: 81, Indels: 29
0.77 0.17 0.06
Matches are distributed among these distances:
157 28 0.08
158 219 0.59
159 121 0.32
160 5 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
CGCATTCTGCCTCTCCAGCCGACTGAGTGCCCTGCACGCCTATTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCATAGC
Found at i:31728709 original size:317 final size:315
Alignment explanation
Indices: 31728163--31728787 Score: 724
Period size: 317 Copynumber: 2.0 Consensus size: 315
31728153 GATCGAATCG
* * *
31728163 GACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAAGGGGGATCAAGCCGATCCCCGGCTTACG
1 GACCGAGGGTTGCGACAGCAGGACCGGCAGCACGCAAGGGGGACCAAGCCGATCCCCGGCTTACG
* * * *
31728228 CATTCTGCCTCTCCGACCGACTGAGTGCCCTGCATGCCCATTTAATGGGTTGGCTTAGTCATAGG
66 CATTATGCCTCTCCGACCGACTCAGTGCCCTGCACGCCCATTTAATGGGTTGACTTAGTCATAGG
** * *
31728293 AGTTCATTCCATGTCTAAGCCATAGCCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCATGCCG
131 AGTTCATTCCATGTCTAAG-CATAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* ** ** * ** *
31728358 GGGGGATCGGGCTGATCCCCGTCTTGCACATTCTGCCTCTCCAGCCGGCTGAGTGCTCGCACGC-
195 GGGGGACCGGGCCAATCCCCACCTTGCACATTCTGCCTCTCCAGCCGACTGAGCACCCGCACGCT
* * * *
31728422 CTATTTCGT-GTGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCTA
260 CT-TTTCGTAG-ATTAGCTTAGGCATACGGAGTTCATTCCACGCCTAAGCCCCAGCTA
* ** * *
31728479 GACCGAGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGC
1 GACCGAGGGTTGCGACAGCAGGACCGGCAGCACGCA-AGGGGGACCAAGCCGATCCCCGGCTTAC
* * * **
31728544 GCATTATGCCTCAT-CGACTGACTCAGTG-CCTGCACGCTCGTTTCGTGGGTTGACTTA-TGCAT
65 GCATTATGCCTC-TCCGACCGACTCAGTGCCCTGCACGCCCATTTAATGGGTTGACTTAGT-CAT
* *
31728606 ACGGAGTTCATTCC-TAGTCTAAG-ATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGC
128 A-GGAGTTCATTCCAT-GTCTAAGCAT-AG-CCGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
* * * **
31728669 ACGCAGGGGGGACCGGTCCAATCCTCACCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCACCCG
189 ACGCAGGGGGGACCGGGCCAATCCCCACCTTGCACATTCTGCCTCTCCAGCCGACTGAGCACCCG
* *
31728734 CACGCTCTTTTCGTAGATTAGCTTAGGCATACTGAGTTCATTCCACGTCTAAGC
254 CACGCTCTTTTCGTAGATTAGCTTAGGCATACGGAGTTCATTCCACGCCTAAGC
31728788 ACGCGGAGTT
Statistics
Matches: 257, Mismatches: 43, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
315 3 0.01
316 60 0.23
317 190 0.74
318 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (315 bp):
GACCGAGGGTTGCGACAGCAGGACCGGCAGCACGCAAGGGGGACCAAGCCGATCCCCGGCTTACG
CATTATGCCTCTCCGACCGACTCAGTGCCCTGCACGCCCATTTAATGGGTTGACTTAGTCATAGG
AGTTCATTCCATGTCTAAGCATAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGG
GGGGACCGGGCCAATCCCCACCTTGCACATTCTGCCTCTCCAGCCGACTGAGCACCCGCACGCTC
TTTTCGTAGATTAGCTTAGGCATACGGAGTTCATTCCACGCCTAAGCCCCAGCTA
Found at i:31729511 original size:26 final size:26
Alignment explanation
Indices: 31729482--31729534 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31729472 GTTGACTTAG
* *
31729482 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCACAATCTAA
* *
31729508 GCATATGAAGTTCATTCACAATCTAA
1 GCATACGAAGTTCATCCACAATCTAA
31729534 G
1 G
31729535 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAATCTAA
Found at i:31730044 original size:26 final size:26
Alignment explanation
Indices: 31729982--31730086 Score: 115
Period size: 26 Copynumber: 4.0 Consensus size: 26
31729972 GTTGGCTTAG
* *
31729982 GCATACAGAGTTCATT-CCATGGCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* * *
31730008 GTATACAGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATTCCCAGTCTAA
*
31730034 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
31730060 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31730086 G
1 G
31730087 ATCGGATCGG
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.06
26 57 0.85
27 6 0.09
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31730045 original size:52 final size:52
Alignment explanation
Indices: 31729979--31730084 Score: 133
Period size: 52 Copynumber: 2.0 Consensus size: 52
31729969 TGGGTTGGCT
*
31729979 TAGGCATACAGAGTTCATTCCAT-GGCTAAGTATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCA-TCCATAGGCTAAGCATACAGAGTTCATTCCCAGTC
** * * * *
31730031 TAGGCATATGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTC
1 TAGGCATACAGAGTTCATCCATAGGCTAAGCATACAGAGTTCATTCCCAGTC
31730083 TA
1 TA
31730085 AGATCGGATC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
51 4 0.09
52 42 0.91
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (52 bp):
TAGGCATACAGAGTTCATCCATAGGCTAAGCATACAGAGTTCATTCCCAGTC
Found at i:31730418 original size:159 final size:158
Alignment explanation
Indices: 31730060--31730562 Score: 516
Period size: 159 Copynumber: 3.2 Consensus size: 158
31730050 CCTAGTCTAA
* * *
31730060 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CAGACTGAGGGTTGTGGCAGCAAGATCGACA
* * * * * *
31730125 GCACGCAGA-GGGGACTAGGCCGATCCTTGGCTTGCGCATTTTGCCTCTCCGGCTGGTTGAGCGC
65 GCACGCAGAGGGGGACTGGGCCGATCCCTGACTTGCGCATTATGCCTCTTCGGCTGGCTGAGCGC
* * *
31730189 CTGCATGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCATGCTCGTTTCGTGGGTTGACTTAG
* ** *
31730218 GCATAGGGAGTTCATTCCTTA-TCTAAGCCCCAG-CAGGACTGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACA-GACTGAGGGTTGTGGCAGCAAGATC-G
* * * *
31730280 GCAGCACGCAGAGGGGGACTGGGTCGATCCCTGACTTGAGCATTATGCCTCTTCGGCTGGCTCAG
62 ACAGCACGCAGAGGGGGACTGGGCCGATCCCTGACTTGCGCATTATGCCTCTTCGGCTGGCTGAG
* * *
31730345 CGCCCGCACGCTCGTTTCATGGGTTGACTTAT
127 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
* * * * *
31730377 GCATACGGAGTTCATTCCTAGTTTAAGATCAGACCAAACTGAGGGTTCTGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CAGACTGAGGGTTGTGGCAGCAAGATCGACA
* * * * * * * *
31730442 GCACGCAGGGGGGGACCGGGCCAATCACC-GACTTGCCCATTCTGCCTCTTCGACCGACTGAGCG
65 GCACGCAGAGGGGGACTGGGCCGATC-CCTGACTTGCGCATTATGCCTCTTCGGCTGGCTGAGCG
* *
31730506 CCCGTATGCTCATTTCGTGGGTTGGA-TTAG
129 CCCGCATGCTCGTTTCGTGGGTT-GACTTAG
* *
31730536 GCATACTGAGTTTATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
31730563 CATACGGAGT
Statistics
Matches: 281, Mismatches: 52, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 62 0.22
159 210 0.75
160 7 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACAGACTGAGGGTTGTGGCAGCAAGATCGACAG
CACGCAGAGGGGGACTGGGCCGATCCCTGACTTGCGCATTATGCCTCTTCGGCTGGCTGAGCGCC
CGCATGCTCGTTTCGTGGGTTGACTTAG
Found at i:31730572 original size:26 final size:26
Alignment explanation
Indices: 31730536--31730588 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31730526 GTTGGATTAG
* *
31730536 GCATACTGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31730562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31730588 G
1 G
31730589 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31731288 original size:26 final size:26
Alignment explanation
Indices: 31731258--31731310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31731248 GTTGACTTAG
*
31731258 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
*
31731284 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
31731310 G
1 G
31731311 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:31731609 original size:159 final size:156
Alignment explanation
Indices: 31731339--31731785 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 156
31731329 TTGCTACAGT
* * * * * *
31731339 AGGACCGGCAGCACATAGGGGGGATGGGTCGATCCCAGCTTGCTCATTCTGCCTCTCCAGCCGGC
1 AGGACCGACAGCACGTAGGGGGGATGGGCCGATCCCAGCTTACGCATTCTGCCTCTCCGGCC-GC
* * * *
31731404 TGAATGCCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCC
65 TGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
**
31731469 CCAG-CCAGACCAAGGGTTGTGGCAGC
130 CCAGACCAGACCAAGGGTTACGGCAGC
* * *
31731495 GGGACCGACAGCACGTAGAGGGGGACTGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGCC
1 AGGACCGACAGCACGTAG-GGGGGA-TGGGCCGATCCC-AGCTTACGCATTCTGCCTCTCCGGCC
* * * * * * * * *
31731560 AGCTCAGTGCCCGTATGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCA-ATCCA
63 -GCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTA
* * * * * *
31731624 AG-ATCGGATCAGATCGAGGGTTACGGTAGC
126 AGCACCAGACCAGACCAAGGGTTACGGCAGC
* * * * *
31731654 AGGATCGACAGCACGTAGGAGGGATCGGGCCGGTCCCCAGCTTAAGCATTCTGCCTCTCCGACCG
1 AGGACCGACAGCACGTAGGGGGGAT-GGGCCGAT-CCCAGCTTACGCATTCTGCCTCTCCGGCCG
* * *
31731719 ATTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
64 -CTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
31731784 CA
128 CA
31731786 TACAGAGTTC
Statistics
Matches: 231, Mismatches: 50, Indels: 17
0.78 0.17 0.06
Matches are distributed among these distances:
156 15 0.06
157 11 0.05
158 96 0.42
159 106 0.46
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
AGGACCGACAGCACGTAGGGGGGATGGGCCGATCCCAGCTTACGCATTCTGCCTCTCCGGCCGCT
GAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCAC
CAGACCAGACCAAGGGTTACGGCAGC
Found at i:31732161 original size:25 final size:26
Alignment explanation
Indices: 31732123--31732174 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
31732113 GTTGACTTAG
31732123 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31732149 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31732174 G
1 G
31732175 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31732508 original size:159 final size:157
Alignment explanation
Indices: 31732149--31732640 Score: 404
Period size: 159 Copynumber: 3.1 Consensus size: 157
31732139 CCCAGTCTAA
* * * * * *
31732149 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACTGGATCAACGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGACCGACA
* * ** * *
31732213 GCACGCAAGGGGGACCAGGCCGATCCCTGGCTTGCCGTTCTGCCTCTTCAACCGGCTGAGCGCCC
66 GCACGCAAGGGGGACCAGGCCGATCCCTGGCTTGCCATTATGCCTCTTCAACCAACTCAACGCCC
*
31732278 GCACGCCCGTTTCGAGGGTTTGCTTAG
131 GCACGCCCGTTTCAAGGGTTTGCTTAG
* * * * * *
31732305 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCGAGCTGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CTGGACCGAGGGTTGCGGCAGCAGGACCGA
* * * ***
31732368 TAGCACGCAGAGGGGGACCGGGGCGAT-CCTCGGCTTGCACATTATGCCTCTTCGGTCAACTCAA
64 CAGCACGCA-AGGGGGACCAGGCCGATCCCT-GGCTTGC-CATTATGCCTCTTCAACCAACTCAA
* * *
31732432 CTCCCGCACGCTCGTTT-AATGGG-TTGACTTAT
126 CGCCCGCACGCCCGTTTCAA-GGGTTTG-CTTAG
* *
31732464 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCAGGACCGAC
* * * * * ** * * *
31732528 AGCACGCAAGAGGGGACCAAGTCGATCCCCGGCTTGTGCATTCTGCCTCACCAACCGACTGAGCG
65 AGCACGCAAG-GGGGACCAGGCCGATCCCTGGCTTG-CCATTATGCCTCTTCAACCAACTCAACG
* * * * ** * *
31732593 CCCGTACACTCATTTCGTGGGTTGGCCTAG
128 CCCGCACGCCCGTTTCAAGGGTTTGCTTAG
*
31732623 GAATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
31732641 ATGTCAAAGC
Statistics
Matches: 260, Mismatches: 60, Indels: 29
0.74 0.17 0.08
Matches are distributed among these distances:
156 11 0.04
157 49 0.19
158 29 0.11
159 161 0.62
160 10 0.04
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGACCGACA
GCACGCAAGGGGGACCAGGCCGATCCCTGGCTTGCCATTATGCCTCTTCAACCAACTCAACGCCC
GCACGCCCGTTTCAAGGGTTTGCTTAG
Found at i:31733892 original size:26 final size:26
Alignment explanation
Indices: 31733856--31733908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31733846 TTGGGCTTAG
31733856 GCATACAGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
* *
31733882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
31733908 G
1 G
31733909 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:31733971 original size:12 final size:12
Alignment explanation
Indices: 31733930--31733973 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
31733920 TTGAGGGTTG
31733930 CGACAGCAGGAC
1 CGACAGCAGGAC
**
31733942 CGGTAGCAGGAC
1 CGACAGCAGGAC
* *
31733954 CAACAGCAGGAT
1 CGACAGCAGGAC
31733966 CGACAGCA
1 CGACAGCA
31733974 CGCAGGGGGG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.34, C:0.30, G:0.32, T:0.05
Consensus pattern (12 bp):
CGACAGCAGGAC
Found at i:31734765 original size:26 final size:26
Alignment explanation
Indices: 31734736--31734788 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
31734726 GTTGGCTTAG
31734736 GCATAC-GTAGCTCATTCC-ATGTCTAA
1 GCATACAG-AGCTCATTCCTA-GTCTAA
*
31734762 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCTAGTCTAA
31734788 G
1 G
31734789 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCTAGTCTAA
Found at i:31735835 original size:26 final size:26
Alignment explanation
Indices: 31735799--31735851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31735789 GTTGACTTAG
*
31735799 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31735825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31735851 G
1 G
31735852 ATCGGGTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31742668 original size:158 final size:158
Alignment explanation
Indices: 31742371--31742708 Score: 432
Period size: 158 Copynumber: 2.1 Consensus size: 158
31742361 AGTCTAAGCG
* * *
31742371 TACGGAGTTCATTCCCA-GTCTAAGCTCAGACTGGACCGAGGGTTGCAGTAGCAGGATCGGTAGC
1 TACGGAGTTCATT-CCATGTCTAAGCCCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGGCAGC
* **
31742435 ACGTAGGGGGGACCAAGCCGATACCCAGCTTGCGCATTCTACCTCTCCGATCGGGTGAGTGCCCG
65 ACGTAGGGGGGACCAAGCCGATACCCAGCTTGCGCATTCTACCTCTCCGACCGGGTGAGCACCCG
*
31742500 CATGCCCGTTTCGTGTGTTGGCTTAGGCA
130 CATGCCCGTTTCGTGGGTTGGCTTAGGCA
* **
31742529 TAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGC
1 TACGGAGTTCATTCCATGTCTAAG-CCCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGGCAGC
* *** * * * *
31742593 ATGTAGAGGGGGACTGGGCCGAT-CCTCGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGCACC
65 ACGTAG-GGGGGACCAAGCCGATACC-CAGCTTGCGCATTCTACCTCTCCGACCGGGTGAGCACC
* *
31742657 CG-TTGCTCGTTTCGTGGGTTGGCTTAGGCA
128 CGCATGCCCGTTTCGTGGGTTGGCTTAGGCA
31742687 TACGGAGTTCATTCCATGTCTA
1 TACGGAGTTCATTCCATGTCTA
31742709 GGCATACAGA
Statistics
Matches: 155, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
157 3 0.02
158 103 0.66
159 49 0.32
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
TACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGGCAGCA
CGTAGGGGGGACCAAGCCGATACCCAGCTTGCGCATTCTACCTCTCCGACCGGGTGAGCACCCGC
ATGCCCGTTTCGTGGGTTGGCTTAGGCA
Found at i:31744644 original size:159 final size:156
Alignment explanation
Indices: 31744268--31744673 Score: 381
Period size: 159 Copynumber: 2.6 Consensus size: 156
31744258 CTTAGTCTAA
* * * *
31744268 GCATATAGAGTTCATTCCCAATCTTAGATCAGACAGGACCGAGGGTTATGGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACA-GACCGAGGGTTATGGTAGCAGGATCGATA
* * * * * * * * * **
31744333 GCACGTACGGGGATCGAGTCGATCCTCGGCTTGTGCATTTTGCCTCTCCGGCCGACTGGGTGCCC
65 GCACGCAGGGGGACCGAGTCGATCCCCGGCCTGCGCATTATGCCTCTCCAGCAGACTCAGTGCCC
* * *
31744398 GTACGCTCGTTTCATGGGTTGGATTAG
130 GTACGCTCATTTCAGGGGTTGAATTAG
** * ** * * * * * *
31744425 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGGCAAATCGAGGGTTGTGGTAGCGGGATCGAC
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACAGACCGAGGGTTATGGTAGCAGGATCGAT
* *
31744489 AGCACGCAGAGGAGGACCG-GGCTGATCCCCGGCCTGCGCATTATGCCTCTTCCAGCAG-TTCAG
64 AGCACGCAG-GG-GGACCGAGTC-GATCCCCGGCCTGCGCATTATGCCTC-TCCAGCAGACTCAG
*
31744552 TGCCCGTACGCTCATTTTAGGGGTT-AACTTAG
125 TGCCCGTACGCTCATTTCAGGGGTTGAA-TTAG
*
31744584 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTATGGTAGCAGGATCGATA
31744649 GCACGCAGGGGGGACCGCA-TCGATC
65 GCACGCA-GGGGGACCG-AGTCGATC
31744674 AACGACTTGC
Statistics
Matches: 193, Mismatches: 44, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
156 3 0.02
157 47 0.24
158 23 0.12
159 110 0.57
160 10 0.05
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTATGGTAGCAGGATCGATAG
CACGCAGGGGGACCGAGTCGATCCCCGGCCTGCGCATTATGCCTCTCCAGCAGACTCAGTGCCCG
TACGCTCATTTCAGGGGTTGAATTAG
Found at i:31744792 original size:26 final size:26
Alignment explanation
Indices: 31744742--31744794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31744732 GTTGGCCTAG
* *
31744742 GCATACGGAGTTCGTTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31744768 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
31744794 G
1 G
31744795 ATGGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:31745437 original size:26 final size:26
Alignment explanation
Indices: 31745401--31745453 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31745391 GTTGACTTAG
31745401 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31745427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31745453 G
1 G
31745454 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31745922 original size:26 final size:26
Alignment explanation
Indices: 31745885--31745937 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31745875 GTTGGCTTAG
*
31745885 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31745911 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31745937 G
1 G
31745938 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31747005 original size:26 final size:26
Alignment explanation
Indices: 31746975--31747027 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31746965 GTTGACTTAG
31746975 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
* *
31747001 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31747027 G
1 G
31747028 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31748850 original size:26 final size:26
Alignment explanation
Indices: 31748820--31748872 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31748810 GTTGACTTAG
*
31748820 GCATACGAAGTTCGTCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
31748846 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31748872 G
1 G
31748873 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31749345 original size:158 final size:158
Alignment explanation
Indices: 31748853--31749346 Score: 457
Period size: 158 Copynumber: 3.1 Consensus size: 158
31748843 TAAGCATATG
* * * * *
31748853 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAACACGTA
1 GAGTTCATTCCAAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* *
31748918 GGGGGGATCGAG-CTGATCCCCGGCTTATGCATTCTGCCTCTCT-AGTCGACTGAACGCCCGCAC
66 GGGGGGATCGAGTC-GATCCCCGGCTTGTGCATTCTGCCTCTCTGA-CCGACTGAACGCCCGCAC
* **
31748981 GC-CTGTTTCATGGGTTGCCTTAGGCATAGG
129 GCTC-GTTTCATGGGTTGGCTTAGGCATACA
* ** * *** * *
31749011 GAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAATGGGACCGATAGCACGC
1 GAGTTCATTCCAAGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* ** * * * * * * * * *
31749075 AGAGAGGGA-CCTGTCGATCCCCAGCTTGCGTATTATGCCTCTCCGACC-AGCTCAATGCCTGAA
65 AG-GGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGA-CTGAACGCCCGCA
*
31749138 CGCTCATTTCATGGGTTGAG-TTAGGCATACA
128 CGCTCGTTTCATGGGTTG-GCTTAGGCATACA
** ** * *
31749169 GAGTTCATTTCCAA-TCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCAGCATCGACAGTACGC
1 GAGTTCA-TTCCAAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* *
31749233 AGGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCATG
65 AGGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGACTGAACGCCCGCACG
* * *
31749298 CTCGTTTCATTGGTTGGCTTAGGCGTATA
130 CTCGTTTCATGGGTTGGCTTAGGCATACA
31749327 GAGTTCATT-CAATGTCTAAG
1 GAGTTCATTCCAA-GTCTAAG
31749347 CATACGGAGT
Statistics
Matches: 257, Mismatches: 65, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
156 3 0.01
157 12 0.05
158 225 0.88
159 17 0.07
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCAAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGACTGAACGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACA
Found at i:31749740 original size:26 final size:26
Alignment explanation
Indices: 31749688--31749740 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31749678 GTTGACTTAC
* *
31749688 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGACTAA
* *
31749714 GCATACGAAGTTCATTCCCAGAGTAA
1 GCATACGAAGTTCATCCCCAGACTAA
31749740 G
1 G
31749741 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGACTAA
Found at i:31750023 original size:159 final size:159
Alignment explanation
Indices: 31749750--31750215 Score: 485
Period size: 159 Copynumber: 2.9 Consensus size: 159
31749740 GATCAGACTG
* * * * * *
31749750 GACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGA-GGGGACTGGG-TCGATCCCCGGCTTG
1 GACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCT-AATCCCCGGCTTG
* * * * * * * *
31749813 CGCATTCTGCCTCTCCTGCTGGCTGAGCACCTGGATGCCTGTTTCGTGGGTTGGCTTAGGCATAG
65 CGCATTCTGCCTCTCCCGTTGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAC
* **
31749878 GGAGTTCATTCCATGTCTAAG-TCCCAGCTG
130 GGAGTTCATTCCATGTCTAAGAT-CCAACCA
* * * *
31749908 GACCGAGGGTTGTAGCAGCGGGA-CTGACAGCAAGCAGAGGGGGACCGGGCTAATCCCCGGCTTG
1 GACCAAGGGTTGCAGCAGCAGGATC-GACAGCACGCAGAGGGGGACCGGGCTAATCCCCGGCTTG
* * * * *
31749972 CCCATTATGCCTCTCCCGTTGGCTCAGCGCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATAC
65 CGCATTCTGCCTCTCCCGTTGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAC
* *
31750037 AGAGTTCATTCCCA-GTCTAAGATCGAACCA
130 GGAGTTCATT-CCATGTCTAAGATCCAACCA
* ** **
31750067 GACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAG-GGGGGACCAGGCCCATCCCCAACTTGC
1 GACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTAATCCCCGGCTTGC
* * * * ** *
31750131 GCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTTATGGGTTAGCTTAGGCATACG
66 GCATTCTGCCTCTCCCGTTGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACG
*
31750196 GAGTTCATTCCTTGTCTAAG
131 GAGTTCATTCCATGTCTAAG
31750216 CATATGGAGT
Statistics
Matches: 252, Mismatches: 49, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 120 0.48
159 123 0.49
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTAATCCCCGGCTTGC
GCATTCTGCCTCTCCCGTTGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGATCCAACCA
Found at i:31750188 original size:158 final size:156
Alignment explanation
Indices: 31749714--31750215 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 156
31749704 CCCAGTCTAA
* ** * * *
31749714 GCATACGAAGTTCATTCCCAGAGTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACTGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
31749779 GCACGCAGAGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCTG-CTGGCTGAGCAC
65 GCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCCGTC-GGCTGAGCGC
* * *
31749843 CTGGATGC-CTGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTC-GTTTCGTGGGTT-GCTTAG
* * * *
31749872 GCATAGGGAGTTCATT-CCATGTCTAAG-TCCCAGCTGGACCGAGGGTTGTAGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT--CAACTGGACCGAGGGTTGCAGCAGCAGGATC-G
* * * * * *
31749934 ACAGCAAGCAGAGGGGGACCGGGCTAATCCCCGGCTTGCCCATTATGCCTCTCCCGTTGGCTCAG
62 ACAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCCGTCGGCTGAG
* *
31749999 CGCCCACACGCTTGTTTCGTGGGTTGACTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTG-CTTAG
* ** *
31750031 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACTGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * ** * *
31750096 GCACGCAGGGGGGACCAGGCCCATCCCCAACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCCGTCGGCTGAGCGCC
**
31750161 CGCACGCTCGTTTTATGGGTTAGCTTAG
130 CGCACGCTCGTTTCGTGGGTT-GCTTAG
**
31750189 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
31750216 CATATGGAGT
Statistics
Matches: 277, Mismatches: 54, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 145 0.52
159 122 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACTGGACCGAGGGTTGCAGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCCGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:31750225 original size:26 final size:26
Alignment explanation
Indices: 31750189--31750241 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31750179 GTTAGCTTAG
**
31750189 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
31750215 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31750241 G
1 G
31750242 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31751312 original size:26 final size:26
Alignment explanation
Indices: 31751275--31751327 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31751265 GTTGACTTAG
*
31751275 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
31751301 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
31751327 G
1 G
31751328 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:31752183 original size:26 final size:26
Alignment explanation
Indices: 31752154--31752206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31752144 GTTGACTTAG
31752154 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
31752180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31752206 G
1 G
31752207 TTCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31752552 original size:26 final size:26
Alignment explanation
Indices: 31752522--31752574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31752512 GTTGACTTAG
*
31752522 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* *
31752548 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
31752574 G
1 G
31752575 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:31754579 original size:159 final size:159
Alignment explanation
Indices: 31754321--31754946 Score: 541
Period size: 159 Copynumber: 3.9 Consensus size: 159
31754311 GATCAGACCA
* ** * * *
31754321 GACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCC-CGACTTGC
1 GACCGAGGGTTATGACAGCAGGACCGACAGCACGCAGGGGGGATCGGGCCGATCCCTAGACTTGC
* * * * * *
31754385 GCATTCTGCCTCTTCGGTCGGTTGAGCGCCCGCATG-CCTGTTTCATGGGTTGGCTTAGGCATAG
66 GCATTCTACCTCTCCGGTCGGTTGAGCACCCGCATGATC-ATTTCATGGGTTGGCTTAGGCATAC
*
31754449 GGAGTTCAATCCATGTCTAAGCCCTCGTCG
130 GGAGTTCATTCCATGTCTAAGCCCTCGTCG
* ** * * * *
31754479 GACCGAGGGTTATGGCAGTGGGCCCGACAGCACGTAGAGGGGGATCGAGCTGATCCCTAG-CTTG
1 GACCGAGGGTTATGACAGCAGGACCGACAGCACGCAG-GGGGGATCGGGCCGATCCCTAGACTTG
* * * * * *
31754543 TGCATTCTACCTCTTCGATCGGTTCAGCACCCGCATGATCATTTCATGGGTTGACTTAGGAATAC
65 CGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCATGATCATTTCATGGGTTGGCTTAGGCATAC
** ** **
31754608 GGAGTTCATTCCCA-GTCTAAGATCTAATTA
130 GGAGTTCATT-CCATGTCTAAGCCCTCGTCG
* * * ** * * * *
31754638 GACTGAGGGTTACGACAGCAGAATTGACAGCACGCAGGGGGCATCGGGCTGATCCCCAG-CTTAC
1 GACCGAGGGTTATGACAGCAGGACCGACAGCACGCAGGGGGGATCGGGCCGATCCCTAGACTTGC
* * * * ** * *
31754702 GAATTTTACCTCTCCTG-CTGGGTGAGCGTCCGCACG-TCATTTTCGTGGGTTGGCTTAGGCATA
66 GCATTCTACCTCTCCGGTC-GGTTGAGCACCCGCATGATCA-TTTCATGGGTTGGCTTAGGCATA
* * * *
31754765 GGGACTTCATTCCATGTCTACGCCC-CAGCCG
129 CGGAGTTCATTCCATGTCTAAGCCCTC-GTCG
* * * ** **
31754796 GACCGAGGGTTGTGATAGCGGGACCGGTAGCACGCAGAAAGGGATCGGGCCGATCCCT-GACTTG
1 GACCGAGGGTTATGACAGCAGGACCGACAGCACGCAG-GGGGGATCGGGCCGATCCCTAGACTTG
* * * *
31754860 TGCATTCTACCTCTCCGGTCGGCTGAGCACTCGCATGCTCATTTCATGGGTTGGCTTAGGCATAC
65 CGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCATGATCATTTCATGGGTTGGCTTAGGCATAC
*
31754925 GGAGTTCATTCTATGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
31754947 ATACGGAGTT
Statistics
Matches: 362, Mismatches: 94, Indels: 23
0.76 0.20 0.05
Matches are distributed among these distances:
157 7 0.02
158 141 0.39
159 205 0.57
160 9 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GACCGAGGGTTATGACAGCAGGACCGACAGCACGCAGGGGGGATCGGGCCGATCCCTAGACTTGC
GCATTCTACCTCTCCGGTCGGTTGAGCACCCGCATGATCATTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCTCGTCG
Found at i:31754945 original size:317 final size:317
Alignment explanation
Indices: 31754287--31754935 Score: 779
Period size: 317 Copynumber: 2.0 Consensus size: 317
31754277 TAATCTAAAC
** * ** ** * * *
31754287 ATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCTA-ATTAGACTGAGGGTTACGACAGCAGAATTGACAG
* * * * * * *
31754351 CACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGCCC
65 CACGCAGGGGGCATCGGGCCGATCCCCGACTTACGAATTCTACCTCTCCGCTCGGGTGAGCGCCC
* * * *
31754416 GCATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATGTCTAAGCCCTCGTCGGA
130 GCACGCATGTTTCATGGGTTGGCTTAGGCATAGGGACTTCAATCCATGTCTAAGCCCTCGCCGGA
* * * * ** *
31754481 CCGAGGGTTATGGCAGTGGGCCCGACAGCACGTAGAGGGGGATCGAGCTGATCCCTAGCTTGTGC
195 CCGAGGGTTATGACAGCGGGACCGACAGCACGCAGAAAGGGATCGAGCCGATCCCTAGCTTGTGC
* *
31754546 ATTCTACCTCTTCGATCGGTTCAGCACCCGCATGATCATTTCATGGGTTGACTTAGGA
260 ATTCTACCTCTCCGATCGGCTCAGCACCCGCATGATCATTTCATGGGTTGACTTAGGA
31754604 ATACGGAGTTCATTCCCAGTCTAAGATCTAATTAGACTGAGGGTTACGACAGCAGAATTGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCTAATTAGACTGAGGGTTACGACAGCAGAATTGACAGC
* * *
31754669 ACGCAGGGGGCATCGGGCTGATCCCC-AGCTTACGAATTTTACCTCTCCTGCT-GGGTGAGCGTC
66 ACGCAGGGGGCATCGGGCCGATCCCCGA-CTTACGAATTCTACCTCTCC-GCTCGGGTGAGCGCC
* * *
31754732 CGCACGTCAT-TTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTACGCCC-CAGCC
129 CGCACG-CATGTTTCATGGGTTGGCTTAGGCATAGGGACTTCAATCCATGTCTAAGCCCTC-GCC
* * ** *
31754795 GGACCGAGGGTTGTGATAGCGGGACCGGTAGCACGCAGAAAGGGATCGGGCCGATCCCT-GACTT
192 GGACCGAGGGTTATGACAGCGGGACCGACAGCACGCAGAAAGGGATCGAGCCGATCCCTAG-CTT
* * * * * *
31754859 GTGCATTCTACCTCTCCGGTCGGCTGAGCACTCGCATGCTCATTTCATGGGTTGGCTTAGGC
256 GTGCATTCTACCTCTCCGATCGGCTCAGCACCCGCATGATCATTTCATGGGTTGACTTAGGA
31754921 ATACGGAGTTCATTC
1 ATACGGAGTTCATTC
31754936 TATGTCTAAG
Statistics
Matches: 279, Mismatches: 47, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
316 3 0.01
317 271 0.97
318 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (317 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCTAATTAGACTGAGGGTTACGACAGCAGAATTGACAGC
ACGCAGGGGGCATCGGGCCGATCCCCGACTTACGAATTCTACCTCTCCGCTCGGGTGAGCGCCCG
CACGCATGTTTCATGGGTTGGCTTAGGCATAGGGACTTCAATCCATGTCTAAGCCCTCGCCGGAC
CGAGGGTTATGACAGCGGGACCGACAGCACGCAGAAAGGGATCGAGCCGATCCCTAGCTTGTGCA
TTCTACCTCTCCGATCGGCTCAGCACCCGCATGATCATTTCATGGGTTGACTTAGGA
Found at i:31754968 original size:26 final size:26
Alignment explanation
Indices: 31754919--31754971 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31754909 GTTGGCTTAG
*
31754919 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31754945 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
31754971 G
1 G
31754972 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:31755334 original size:26 final size:26
Alignment explanation
Indices: 31755298--31755350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31755288 GTTGACTTAG
* *
31755298 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
31755324 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
31755350 G
1 G
31755351 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:31755987 original size:317 final size:318
Alignment explanation
Indices: 31755381--31756115 Score: 841
Period size: 317 Copynumber: 2.3 Consensus size: 318
31755371 ACGGCTGTAG
* * * * * *
31755381 GATCCCTGGCTTGCGCATTCTGCCTCTCTGGCTGACTGAGTGCCCGCACGCCCATTTCATGGGTT
1 GATCCTTGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * * *
31755446 GGGTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGAG
* * * * *
31755511 ATGGGCAGCACGCAGAGGGGGACCAGATCGACCCTCGACTTACGTATTATGCCTTTCCGACTGGC
131 ATCGGCAGCACCCAGAGGGGGACCAGACCGACCCTCGACTTACGCATTATACCTTTCCGACTGGC
** ** * * * * *
31755576 TCAGTGCCCGAATGCTTATTTTATGGGTCGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGAT
196 TCAGCACCCGAACACTCATTTCATGGGTCGACGTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * *
31755641 CAGATCGGATCGAGGGTTGAGACAGCAGGATCGACAGCTCGCAGG-GGGGACCAAGCC
261 CAGACCGGATCAAGGGTTGAGACAGCAGGATCAACAGCGCGCAGGAGGGGACCAAGCC
* * * * **
31755698 GGTCCTTGGCTTGTGCATTCTGCCTCTCTGGCTGGCTAAGCGCTCGTACGCTTGTTTCGTGGGTT
1 GATCCTTGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
*
31755763 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC-GAACTGAGGGTTGTGGCAGCGA
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACTGAGGGTTGTGGCAGCGA
*** * *
31755827 GATCGGCAGCACCCAGAGGGGGATTGGGCCGATCCCT-GACTTGCGCATTATACCTTTCCGA-TC
130 GATCGGCAGCACCCAGAGGGGGACCAGACCGA-CCCTCGACTTACGCATTATACCTTTCCGACT-
* * * *
31755890 GGCTCAGCACCCGCACACTCGTTTCGTGGGTTGACGTAGGCATACAGAGTTCATTCCCAGTCTAA
193 GGCTCAGCACCCGAACACTCATTTCATGGGTCGACGTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * * * * ** *
31755955 GATCGGACCGGA-CAAAGGGTTTTGATAGCAGGATCAATAGCGCGTAGGAGGGGATCGGGTC
258 GATCAGACCGGATC-AAGGGTTGAGACAGCAGGATCAACAGCGCGCAGGAGGGGACCAAGCC
*** * * *
31756016 GATCCTCAACTTGTGCATTCTGCCTCTCTGACTGGCTGAGCACCCGCACGCTCATTTTGTGGGTT
1 GATCCTTGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
* *
31756081 GGCTTAGGCATGCAGAGTTCATTCCATGTCTAAGC
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31756116 ATATGGAGTT
Statistics
Matches: 345, Mismatches: 68, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
316 3 0.01
317 244 0.71
318 98 0.28
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (318 bp):
GATCCTTGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGAG
ATCGGCAGCACCCAGAGGGGGACCAGACCGACCCTCGACTTACGCATTATACCTTTCCGACTGGC
TCAGCACCCGAACACTCATTTCATGGGTCGACGTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
CAGACCGGATCAAGGGTTGAGACAGCAGGATCAACAGCGCGCAGGAGGGGACCAAGCC
Found at i:31756993 original size:25 final size:26
Alignment explanation
Indices: 31756964--31757018 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
31756954 TGGGTTGACT
*
31756964 TAAGCATACGGAGTTCA-TCCCAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
31756989 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
31757015 TAAG
1 TAAG
31757019 ATCTAACGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 17 0.61
26 11 0.39
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCAAGTC
Found at i:31757162 original size:182 final size:184
Alignment explanation
Indices: 31756809--31757176 Score: 474
Period size: 182 Copynumber: 2.0 Consensus size: 184
31756799 GTTGACTTAG
* * * *
31756809 GCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGACCGGGGGTTGCGACAGCAGGATCGATG
1 GCATACGAAGTTCATTCCAAGTCTAAGATCGGAACGGACCGAGGGTTGCGACAGCAGGATCGATA
* * * * *
31756874 GCACGTAGGGGGGACCAGGCCGATCCTCGACTTGCGTATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGCAGGGGGGACCAGACCGATCCCCGACTTACGAATTCTGCCTCTCCGACCGACTGAGCGCC
* * *
31756939 TGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCA-GTCTAA
131 TGCACGCCCGTTTCATGGATTGACTTAAGCATAAGGAGTTCATCCCATGTCTAA
* * * *
31756992 GCATACGGAGTTCATTCCAAGTCTAAGATC-TAACGGGATCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGAAGTTCATTCCAAGTCTAAGATCGGAAC-GGACCGAGGGTTGCGACAGCAGGATCGAT
* **
31757056 AGCACGCA-GGGGGACC-GAACCGATCCCCGACTTACGAATTCTGCCTCTTCGACCGGGTGAGCG
65 AGCACGCAGGGGGGACCAG-ACCGATCCCCGACTTACGAATTCTGCCTCTCCGACCGACTGAGCG
* * * * *
31757119 CCTGCACGCCCTTTTCGTGGATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
129 CCTGCACGCCCGTTTCATGGATTGACTTAAGCATAAGGAGTTCATCCCATGTCTAA
31757175 GC
1 GC
31757177 CCCAGCCCGA
Statistics
Matches: 158, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
181 1 0.01
182 89 0.56
183 68 0.43
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCAAGTCTAAGATCGGAACGGACCGAGGGTTGCGACAGCAGGATCGATA
GCACGCAGGGGGGACCAGACCGATCCCCGACTTACGAATTCTGCCTCTCCGACCGACTGAGCGCC
TGCACGCCCGTTTCATGGATTGACTTAAGCATAAGGAGTTCATCCCATGTCTAA
Found at i:31757347 original size:26 final size:26
Alignment explanation
Indices: 31757311--31757360 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
31757301 GGCTTAGGCA
**
31757311 TACGGAGTTCATTCCGTGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
31757337 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
31757361 AGTTTCAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:31758538 original size:158 final size:155
Alignment explanation
Indices: 31758101--31758559 Score: 415
Period size: 159 Copynumber: 2.9 Consensus size: 155
31758091 CCAGACCAAA
* *
31758101 GGTTACGGTAGCAGGATCGGCAACACACAGGGGGGACCGA-ACCTATCCCCGGCTTGCGCATTCT
1 GGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCGAGA-CGATCCCCGGCTTGCGCATTCT
* * * * * * *
31758165 GCCTCTCCGGCCAGCTGAGTGCCCGCACGCTCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCA
65 GCCTCTCC-GCCGGCTAAGCGCCCG-ACACTCGTTTCATGGGTTGGCTTAGGCATA-CGAGTTTA
*
31758230 TTCCATGTCTAAGTCCCAGCCGAACCGAG
127 TTCCATGTCTAAGACCCAGCCGAACCGAG
* * ** * * ** * * * * * * *
31758259 GGTTGTGGCAGTGGGATCGGTAGCATGCAGAGGCGGATC-AGGTCGATTCTCAGCTTGCGCATTA
1 GGTTGCGGTAGCAGGATCGGCAACACACAG-GGGGGACCGA-GACGATCCCCGGCTTGCGCATTC
* * * * *
31758323 TGCCTCTCCGACCGGCTCAGCACCC-ACATGCTTGTTTCATGGGTTGACGTAGGCATACAGAGTT
64 TGCCTCTCCG-CCGGCTAAGCGCCCGACA--CTCGTTTCATGGGTTGGCTTAGGCATAC-GAGTT
** * *
31758387 TATTCC-TAGTCTAAGA-CTGGACTGGACCGAG
125 TATTCCAT-GTCTAAGACCCAG-CCGAACCGAG
* *
31758418 GGTTGCGGTAGCAGGATCGACAACACACAGGGGGGACCGAGACGGTCCCCGGCTTGCGCATTCTG
1 GGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCGAGACGATCCCCGGCTTGCGCATTCTG
*
31758483 CCTCTCCAGCTGGCTAAGCGCCCGTACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTTAT
66 CCTCTCC-GCCGGCTAAGCGCCCG-ACACTCGTTTCATGGGTTGGCTTAGGCATACG-AGTTTAT
31758548 TCCATGTCTAAG
128 TCCATGTCTAAG
31758560 CATACAAAGT
Statistics
Matches: 230, Mismatches: 56, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
157 3 0.01
158 111 0.48
159 113 0.49
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCGAGACGATCCCCGGCTTGCGCATTCTG
CCTCTCCGCCGGCTAAGCGCCCGACACTCGTTTCATGGGTTGGCTTAGGCATACGAGTTTATTCC
ATGTCTAAGACCCAGCCGAACCGAG
Found at i:31758585 original size:26 final size:26
Alignment explanation
Indices: 31758533--31758585 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31758523 GTTGGCTTAG
* * *
31758533 GCATACGAAGTTTATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATGTATAA
31758559 GCATACAAAGTTCATTCCCA-GTATAA
1 GCATACAAAGTTCATT-CCATGTATAA
31758585 G
1 G
31758586 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGTATAA
Found at i:31759412 original size:26 final size:26
Alignment explanation
Indices: 31759376--31759428 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31759366 GTTAACTTAT
31759376 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31759402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31759428 G
1 G
31759429 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31760171 original size:26 final size:26
Alignment explanation
Indices: 31760123--31760175 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31760113 GTTGACTTAG
**
31760123 GCATATGGAGTTTGTCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
31760149 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
31760175 G
1 G
31760176 ATCAAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:31760299 original size:367 final size:366
Alignment explanation
Indices: 31759551--31760370 Score: 886
Period size: 367 Copynumber: 2.2 Consensus size: 366
31759541 CACCCGTACT
*
31759551 CTCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCGCAACCAGACCGA
1 CTCGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCCAACCAGACCGA
* * *
31759615 GGGCTGTGGCAGCAGGACCGGTAGCGAGATCAGCAGCACACAAAAGGGATCGAGCTGATCCTCGA
65 GGGCTGTGGCAGCAGGACCGGCAACGAGATCAGCAGCACACAAAAGGGATCGAGCTGATCCCCGA
* * * ** * *
31759680 CTTGCGCATTATACCTCTTCGGTCGACCTCTCTGGCCGATTGAGCACCCGCATGCTCGTTTCATG
130 CTTACGCATTATACCTCTTCGGTAGACCTCTCCGGCCGACAGAGCACCCGCACGATCGTTTCATG
31759745 GGTTGACTTAGGCATACAAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
195 GGTTGACTTAGGCATACAAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
*** ** * *
31759810 GGGATTGGACCGAGGGTTGGAACAGCAGGATCGATAATATCCAGGGGGGATCGAGTCGATCCCTG
260 CAAATCAGACCGAGGGTTGGAACAGCAGGATCGACAACATCCAGGGGGGATCGAGTCGATCCCTG
* * *
31759875 ACTTGCACATTTTGCCTCTTTGGCCGACTAAGCACCCACACA
325 ACTTGCACATTCTACCTCTTTGACCGACTAAGCACCCACACA
*
31759917 CTCGTCTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACC-GAACCGA
1 CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAG-ACCGA
* * * * ** *
31759981 GGGTTGTGGCAGTAGGACCGGCAACGGGATCAGCAGTATGCAGAAGGGGATCGAGCTGATCCCC-
65 GGGCTGTGGCAGCAGGACCGGCAACGAGATCAGCAGCACACA-AAAGGGATCGAGCTGATCCCCG
* * * * *
31760045 AGCTTATGCATTATGCCTCTTCGGCTAG-CCTCTCCGGTCGACAGAGCGCCCGTACGATCGTTTC
129 A-CTTACGCATTATACCTCTTCGG-TAGACCTCTCCGGCCGACAGAGCACCCGCACGATCGTTTC
* ** ** * *
31760109 GTGGGTTGACTTAGGCATATGGAGTTTGTCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTA
192 ATGGGTTGACTTAGGCATA-CAAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTA
* *
31760174 AGATCAAATCAGACCGAGGGTTGCG-ACAGTAGGATCGACAGCA-CGCA-GGGGG-TCCGAG-CT
256 AGATCAAATCAGACCGAGGGTTG-GAACAGCAGGATCGACAACATC-CAGGGGGGAT-CGAGTC-
* * ** * * * * *
31760234 GATCCCTGACTTTCGCATTCTACCT-TTTCGATTGGCTGAGCACCTATACG
317 GATCCCTGACTTGCACATTCTACCTCTTT-GACCGACTAAGCACCCACACA
* * ** * * * * *
31760284 TTCGTTTCGTGGGTTGGCTTAGGCATTGGGAGTTTATTCCATGTCTAAGCCCTAGCCAGACTGAG
1 CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAG
* * * *
31760349 GGTTATGGCAACAGGACTGGCA
66 GGCTGTGGCAGCAGGACCGGCA
31760371 GCATACAGAG
Statistics
Matches: 376, Mismatches: 66, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
365 1 0.00
366 98 0.26
367 200 0.53
368 76 0.20
369 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (366 bp):
CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAG
GGCTGTGGCAGCAGGACCGGCAACGAGATCAGCAGCACACAAAAGGGATCGAGCTGATCCCCGAC
TTACGCATTATACCTCTTCGGTAGACCTCTCCGGCCGACAGAGCACCCGCACGATCGTTTCATGG
GTTGACTTAGGCATACAAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
AAATCAGACCGAGGGTTGGAACAGCAGGATCGACAACATCCAGGGGGGATCGAGTCGATCCCTGA
CTTGCACATTCTACCTCTTTGACCGACTAAGCACCCACACA
Found at i:31761416 original size:160 final size:158
Alignment explanation
Indices: 31761026--31761528 Score: 378
Period size: 158 Copynumber: 3.2 Consensus size: 158
31761016 CCCAGTCTAA
* * * *
31761026 GCATACGGAGTTCATTCCCAATCTAAGATCAGA-TCGGACTGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTGATAGTAGGATCGAC
* * * * * *
31761090 AGCAAGCAGGGGGGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGCGC
65 AGCACGCAGAGGGGATCGGGTCGATCCCAGACTTACGCATTATGCCTCTCAGACCGACTCAACGC
* * * *
31761155 CCGCAGGCCCGTTTCGTGGGTTGACTTAG
130 CCGAACGCCCATTTCATGGGTTGACTTAG
* * ** * * * *
31761184 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTGGT-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGTGATAGTAG-GATCG
* * * *
31761246 ACAGCACGCAGAAGGGGA-CTGGGTCGATCCTCAG-CTTGCGTATTATGCCCTCTTCAG-CTGGC
63 ACAGCACGCAG-AGGGGATC-GGGTCGATCC-CAGACTTACGCATTATG-CCTC-TCAGACCGAC
** *
31761308 TCAACGCCCGAACGCTTATTTCATTGGTTGACTTAG
123 TCAACGCCCGAACGCCCATTTCATGGGTTGACTTAG
* *
31761344 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGATAGTAGGATCGACA
* * * * * ** * * * ** * * *
31761409 ACACGCAG-GAGGGACCGAGCCGATACCC-GGCTTGTGCATTTTGCCTCTCCGATCGGTTGAGCA
66 GCACGCAGAG-GGGATCGGGTCGAT-CCCAGACTTACGCATTATGCCTCTCAGACCGACTCAACG
* * *
31761472 CCCGCACGCTCATTTCATGGGTTGGCTTAG
129 CCCGAACGCCCATTTCATGGGTTGACTTAG
*
31761502 ACATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
31761529 CATACAGAGT
Statistics
Matches: 269, Mismatches: 58, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
157 9 0.03
158 109 0.41
159 53 0.20
160 92 0.34
161 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGATAGTAGGATCGACA
GCACGCAGAGGGGATCGGGTCGATCCCAGACTTACGCATTATGCCTCTCAGACCGACTCAACGCC
CGAACGCCCATTTCATGGGTTGACTTAG
Found at i:31761532 original size:880 final size:880
Alignment explanation
Indices: 31759923--31761562 Score: 1969
Period size: 878 Copynumber: 1.9 Consensus size: 880
31759913 CACACTCGTC
31759923 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
1 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
* * * * *
31759988 GGCAGTAGGACCGGCAACGGGATCAGCAGTATGCAGAAGGGGATCGAGCTGATCCCCAGCTTATG
66 GGCAGCAGGACCGGCAACGAGATCAACAGTACGCAGAAGCGGATCGAGCTGATCCCCAGCTTATG
* * * * * * ** *
31760053 CATTATGCCTCTTCGGCTAGCCTCTCCGGTCGACAGAGCGCCCGTACGATCGTTTCGTGGGTTGA
131 CATTATACCTCTCCGGCGAGCCTCTCCGGCCGACAGAACACCCACACGATCGTTTCATGGGTTGA
** * * *
31760118 CTTAGGCATATGGAGTTTGTCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAAAT
196 CTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAAT
* * *
31760183 CAGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGTCCGAGCTGATCCCTGACTTTC
261 CAGACCGAGGGTTGCGACAGTAGGATCGACAGCAAGCAGGGGGTCCGAGCTGATCCCCGACTTAC
* * * ** * * * ** * *
31760248 GCATTCTACCTTTTCGATTGGCTGAGCACCTATACGTTCGTTTCGTGGGTTGGCTTAGGCATTGG
326 GCATTATACCTCTCCGACCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGG
* * * * * *
31760313 GAGTTTATTCCATGTCTAAGCCCTAGCCAGACTGAGGGTTATGGCAACAGGACTGGCAGCATACA
391 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACAGGACCGACAGCACACA
* * * * * *
31760378 GAGGGGGATTGGGCCGATCCCTGGCTGGCGCATTATGCCTCGCTGATCGGCTTAGCACCCGAACG
456 GAAGGGGACTGGGCCGATCCCTAGCTGGCGCATTATGCCTCGCAGATCGGCTCAACACCCGAACG
* * * * *
31760443 CTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAG
521 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAG
* * ** * * * *
31760508 GGTTGCAGCAATAGGATCGATAGCACGCAGGGGGATTGGGTCGGTCCTTGGCTTACGCATTCAGC
586 GGTTGCAGCAATAGGATCGACAACACGCAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCAGC
* * ** *
31760573 CTCTACGATCGGTTGAGCACCCGCACTCTCGTTTTGTGGGTTGGCTTAATCATATAGAGTTCATT
651 CTCTACGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAATCATACAGAGTTCATT
* ** ** *
31760638 CCATGTTTAAGCATATGGAGTTCATTCTTATTATAAGATCGGACCGGACCAAGGGTTATGGCAGT
716 CCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCGGACCGGACCAAGGGTTATGGCAGT
31760703 AGGACTAGTAGCAGGATTGGCAACACGCAGAGGGGCATCGGGCTGATCCTCGACATACGCATTCT
781 AGGACTAGTAGCAGGATTGGCAACACGCAGAGGGGCATCGGGCTGATCCTCGACATACGCATTCT
31760768 GCCTCTCCGGCTGACTGATCGCCCGCACTCTTGTT
846 GCCTCTCCGGCTGACTGATCGCCCGCACTCTTGTT
* * *
31760803 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
1 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
* * * * * * *
31760868 GGTAGCAGGACTGGTAGCGAGATCAACAGTACGTAGAA-CGGA-CTGAGCTGATCCCGA-CTTGT
66 GGCAGCAGGACCGGCAACGAGATCAACAGTACGCAGAAGCGGATC-GAGCTGATCCCCAGCTTAT
* * * * *
31760930 GCATTATACCTCTCCGGCCGA-CCTCTCTGGCCGGCTGAACACCCACATGCTCGTTTCATGGGTT
130 GCATTATACCTCTCCGG-CGAGCCTCTCCGGCCGACAGAACACCCACACGATCGTTTCATGGGTT
*
31760994 GACTTAGGCATAT-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAG
194 GACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAA
* * *
31761058 ATCGGACTGAGGGTTGCGACAGTAGGATCGACAGCAAGCAGGGGGGAT-CG-GGTCGATCCCCGA
259 ATCAGACCGAGGGTTGCGACAGTAGGATCGACAGCAAGCA-GGGGG-TCCGAGCT-GATCCCCGA
* * * *
31761121 CTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCAGGCCCGTTTCGTGGGTTGACTTAGGC
321 CTTACGCATTATACCTCTCCGACCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGC
* * * ****
31761186 ATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG-TGGTGAGACCGACAG
386 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACAG-GACCGACAG
* * * * * *
31761250 CACGCAGAAGGGGACTGGGTCGAT-CCTCAGCTTGCGTATTATGCCCTCTTCAGCT-GGCTCAAC
450 CACACAGAAGGGGACTGGGCCGATCCCT-AGCTGGCGCATTATG-CCTC-GCAGATCGGCTCAAC
* * * *
31761313 GCCCGAACGCTTATTTCATTGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGA-
512 ACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* *
31761377 CTGGACCAAGGGTTG-TG-ATAGTAGGATCGACAACACGCAGGAGGGACCGAGCCGATACC-CGG
577 C-GAACCAAGGGTTGCAGCA-A-TAGGATCGACAACACGCAGG-GGGACCGAGCCGAT-CCTCGG
** ** *
31761439 CTTGTGCATTTTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGA-
637 CTTACGCATTCAGCCTCTACGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTA-AT
* *
31761503 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACC
701 CATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCGGACC
31761563 AGATCGAGGG
Statistics
Matches: 626, Mismatches: 119, Indels: 30
0.81 0.15 0.04
Matches are distributed among these distances:
877 89 0.14
878 212 0.34
879 113 0.18
880 209 0.33
881 3 0.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (880 bp):
TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
GGCAGCAGGACCGGCAACGAGATCAACAGTACGCAGAAGCGGATCGAGCTGATCCCCAGCTTATG
CATTATACCTCTCCGGCGAGCCTCTCCGGCCGACAGAACACCCACACGATCGTTTCATGGGTTGA
CTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAAT
CAGACCGAGGGTTGCGACAGTAGGATCGACAGCAAGCAGGGGGTCCGAGCTGATCCCCGACTTAC
GCATTATACCTCTCCGACCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACAGGACCGACAGCACACA
GAAGGGGACTGGGCCGATCCCTAGCTGGCGCATTATGCCTCGCAGATCGGCTCAACACCCGAACG
CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAG
GGTTGCAGCAATAGGATCGACAACACGCAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCAGC
CTCTACGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAATCATACAGAGTTCATT
CCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCGGACCGGACCAAGGGTTATGGCAGT
AGGACTAGTAGCAGGATTGGCAACACGCAGAGGGGCATCGGGCTGATCCTCGACATACGCATTCT
GCCTCTCCGGCTGACTGATCGCCCGCACTCTTGTT
Found at i:31761552 original size:26 final size:26
Alignment explanation
Indices: 31761503--31761554 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31761493 TTGGCTTAGA
* *
31761503 CATACGGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCATATCTAAG
31761529 CATACAGAGTTCATTCCCA-ATCTAAG
1 CATACAGAGTTCATT-CCATATCTAAG
31761555 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATATCTAAG
Found at i:31761598 original size:880 final size:881
Alignment explanation
Indices: 31759923--31761618 Score: 1957
Period size: 880 Copynumber: 1.9 Consensus size: 881
31759913 CACACTCGTC
31759923 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
1 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
* * * * *
31759988 GGCAGTAGGACCGGCAACGGGATCAGCAGTATGCAGAAGGGGATCGAGCTGATCCCCAGCTTATG
66 GGCAGCAGGACCGGCAACGAGATCAACAGTACGCAGAAGCGGATCGAGCTGATCCCCAGCTTATG
* * * * * * ** *
31760053 CATTATGCCTCTTCGGCTAGCCTCTCCGGTCGACAGAGCGCCCGTACGATCGTTTCGTGGGTTGA
131 CATTATACCTCTCCGGCGAGCCTCTCCGGCCGACAGAACACCCACACGATCGTTTCATGGGTTGA
** * * *
31760118 CTTAGGCATATGGAGTTTGTCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAAAT
196 CTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAAT
* * *
31760183 CAGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGTCCGAGCTGATCCCTGACTTTC
261 CAGACCGAGGGTTGCGACAGTAGGATCGACAGCAAGCAGGGGGTCCGAGCTGATCCCCGACTTAC
* * * ** * * * ** * *
31760248 GCATTCTACCTTTTCGATTGGCTGAGCACCTATACGTTCGTTTCGTGGGTTGGCTTAGGCATTGG
326 GCATTATACCTCTCCGACCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGG
* * * * * *
31760313 GAGTTTATTCCATGTCTAAGCCCTAGCCAGACTGAGGGTTATGGCAACAGGACTGGCAGCATACA
391 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACAGGACCGACAGCACACA
* * * * * *
31760378 GAGGGGGATTGGGCCGATCCCTGGCTGGCGCATTATGCCTCGCTGATCGGCTTAGCACCCGAACG
456 GAAGGGGACTGGGCCGATCCCTAGCTGGCGCATTATGCCTCGCAGATCGGCTCAACACCCGAACG
* * * * *
31760443 CTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAG
521 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAG
* * ** * * * *
31760508 GGTTGCAGCAATAGGATCGATAGCACGCAGGGGGATTGGGTCGGTCCTTGGCTTACGCATTCAGC
586 GGTTGCAGCAATAGGATCGACAACACGCAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCAGC
* * ** *
31760573 CTCTACGATCGGTTGAGCACCCGCACTCTCGTTTTGTGGGTTGGCTTAATCATATAGAGTTCATT
651 CTCTACGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAATCATACAGAGTTCATT
* ** ** * * ** *
31760638 CCATGTTTAAGCATATGGAGTTCATTCTTATTATAAGATCGGACCGGACCAAGGGTTATGGCAGT
716 CCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCGGACCAGACCAAGGGTTACAGCAGC
* * * *
31760703 AGGACTAGTAGCAGGATTGGCAACACGCAG-AGGGGCATCGGGCTGATCCTCGACATACGCATTC
781 AGGACCAGCAGCAGGATCGACAACACGCAGAAGGGGCATCGGGCTGATCCTCGACATACGCATTC
31760767 TGCCTCTCCGGCTGACTGATCGCCCGCACTCTTGTT
846 TGCCTCTCCGGCTGACTGATCGCCCGCACTCTTGTT
* * *
31760803 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
1 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
* * * * * * *
31760868 GGTAGCAGGACTGGTAGCGAGATCAACAGTACGTAGAA-CGGA-CTGAGCTGATCCCGA-CTTGT
66 GGCAGCAGGACCGGCAACGAGATCAACAGTACGCAGAAGCGGATC-GAGCTGATCCCCAGCTTAT
* * * * *
31760930 GCATTATACCTCTCCGGCCGA-CCTCTCTGGCCGGCTGAACACCCACATGCTCGTTTCATGGGTT
130 GCATTATACCTCTCCGG-CGAGCCTCTCCGGCCGACAGAACACCCACACGATCGTTTCATGGGTT
*
31760994 GACTTAGGCATAT-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAG
194 GACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAA
* * *
31761058 ATCGGACTGAGGGTTGCGACAGTAGGATCGACAGCAAGCAGGGGGGAT-CG-GGTCGATCCCCGA
259 ATCAGACCGAGGGTTGCGACAGTAGGATCGACAGCAAGCA-GGGGG-TCCGAGCT-GATCCCCGA
* * * *
31761121 CTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCAGGCCCGTTTCGTGGGTTGACTTAGGC
321 CTTACGCATTATACCTCTCCGACCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGC
* * * ****
31761186 ATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG-TGGTGAGACCGACAG
386 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACAG-GACCGACAG
* * * * * *
31761250 CACGCAGAAGGGGACTGGGTCGAT-CCTCAGCTTGCGTATTATGCCCTCTTCAGCT-GGCTCAAC
450 CACACAGAAGGGGACTGGGCCGATCCCT-AGCTGGCGCATTATG-CCTC-GCAGATCGGCTCAAC
* * * *
31761313 GCCCGAACGCTTATTTCATTGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGA-
512 ACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* *
31761377 CTGGACCAAGGGTTG-TG-ATAGTAGGATCGACAACACGCAGGAGGGACCGAGCCGATACC-CGG
577 C-GAACCAAGGGTTGCAGCA-A-TAGGATCGACAACACGCAGG-GGGACCGAGCCGAT-CCTCGG
** ** *
31761439 CTTGTGCATTTTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGA-
637 CTTACGCATTCAGCCTCTACGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTA-AT
* * *
31761503 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGATC
701 CATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCGGACCAGACC
* * * *
31761568 GAGGGTTGCAGTAGCAGGACCAGCAGCAGGATCGACAGCACGCAGAAGGGG
766 AAGGGTTACAGCAGCAGGACCAGCAGCAGGATCGACAACACGCAGAAGGGG
31761619 ACCGGACTAA
Statistics
Matches: 668, Mismatches: 132, Indels: 31
0.80 0.16 0.04
Matches are distributed among these distances:
877 89 0.13
878 212 0.32
879 113 0.17
880 246 0.37
881 8 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (881 bp):
TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGT
GGCAGCAGGACCGGCAACGAGATCAACAGTACGCAGAAGCGGATCGAGCTGATCCCCAGCTTATG
CATTATACCTCTCCGGCGAGCCTCTCCGGCCGACAGAACACCCACACGATCGTTTCATGGGTTGA
CTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAAT
CAGACCGAGGGTTGCGACAGTAGGATCGACAGCAAGCAGGGGGTCCGAGCTGATCCCCGACTTAC
GCATTATACCTCTCCGACCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACAGGACCGACAGCACACA
GAAGGGGACTGGGCCGATCCCTAGCTGGCGCATTATGCCTCGCAGATCGGCTCAACACCCGAACG
CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAG
GGTTGCAGCAATAGGATCGACAACACGCAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCAGC
CTCTACGATCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAATCATACAGAGTTCATT
CCATGTCTAAGCATACAGAGTTCATTCCCAATATAAGATCGGACCAGACCAAGGGTTACAGCAGC
AGGACCAGCAGCAGGATCGACAACACGCAGAAGGGGCATCGGGCTGATCCTCGACATACGCATTC
TGCCTCTCCGGCTGACTGATCGCCCGCACTCTTGTT
Found at i:31761730 original size:26 final size:26
Alignment explanation
Indices: 31761700--31761750 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31761690 TTGACTTAGG
*
31761700 CATACATAGTTCATCCCCAGTCTAAC
1 CATACAGAGTTCATCCCCAGTCTAAC
* *
31761726 CATACAGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
31761751 GATCGGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAC
Found at i:31762198 original size:157 final size:154
Alignment explanation
Indices: 31761726--31762236 Score: 394
Period size: 157 Copynumber: 3.2 Consensus size: 154
31761716 CCAGTCTAAC
* * * *
31761726 CATACAGAGTTCATTCC-TAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 CATACAGAGTTCATTCCAT-GTCTAAGATCGGACCGGACTGAGGGTTGTGG-GGAAGGATCGACA
* * * *** *
31761790 GCACGCAGGGGAGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTTTCCGACTGGCTGAGCACC
64 GCACGCAGGGGGGAC-GGG-CGGTCCCCGGCTTGCGCATTCTACCTCT-CGACCAACTGAGAACC
* *
31761855 CGCACGC-CTGTTTCGTGGGTTGGCTTAGG
126 CGCACGCTC-GTTTCATGGGTTGACTTAGG
** * * ** * * *
31761884 CATAGGGAGTTCATTCCATGACTAA-ACCCCAACTGGACTGAGGGTTGT-GGCAACGGGA-CTGG
1 CATACAGAGTTCATTCCATGTCTAAGA-TCGGACCGGACTGAGGGTTGTGGGGAA--GGATC-GA
* * * * * * * * * *
31761946 TAGTACGCAGAAGGGGACCGAGCTGGTCCTCGACTTGTC-CATTATGCCTCTCCAGCCAACT--C
62 CAGCACGCAG-GGGGGA-CGGGC-GGTCCCCGGCTTG-CGCATTCTACCTCTCGA-CCAACTGAG
*
31762008 AACGCC-CAGGCGCTCGTTTGATGGGTTGACTTAGG
122 AAC-CCGCA--CGCTCGTTTCATGGGTTGACTTAGG
*
31762043 CATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTGTGGGGTAGGATCGACAG
1 CATACAGAGTTCATT-CCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGGGAAGGATCGACAG
*
31762107 CACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGCGTATTCTACCTCTACGACCAACTGAGAACCC
65 CACGCAGGGGGGA-CGGG-CGGTCCCCGGCTTGCGCATTCTACCTCT-CGACCAACTGAGAACCC
*
31762172 GCACGCTCGTTTCATGGGTTGCCTTAGG
127 GCACGCTCGTTTCATGGGTTGACTTAGG
** * *
31762200 CATATGGAGTTCATTCCATGTCTAAGATTGGATCGGA
1 CATACAGAGTTCATTCCATGTCTAAGATCGGACCGGA
31762237 TCAAGGGTTA
Statistics
Matches: 267, Mismatches: 61, Indels: 51
0.70 0.16 0.13
Matches are distributed among these distances:
156 5 0.02
157 93 0.35
158 69 0.26
159 90 0.34
160 10 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (154 bp):
CATACAGAGTTCATTCCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGGGAAGGATCGACAGC
ACGCAGGGGGGACGGGCGGTCCCCGGCTTGCGCATTCTACCTCTCGACCAACTGAGAACCCGCAC
GCTCGTTTCATGGGTTGACTTAGG
Found at i:31762413 original size:26 final size:26
Alignment explanation
Indices: 31762366--31762415 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
31762356 TGGGTTGGCT
*
31762366 TACGAAGTTCATTCCATGTCTAAGCA
1 TACGAAGTTCATTCCATATCTAAGCA
*
31762392 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGAAGTTCATT-CCATATCTAAG
31762416 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCATATCTAAGCA
Found at i:31762763 original size:159 final size:158
Alignment explanation
Indices: 31762544--31762893 Score: 373
Period size: 158 Copynumber: 2.2 Consensus size: 158
31762534 ACGTCTGTTG
* * * * ** * *
31762544 CGTGGGTTGGCTTAGACATAGGGTGTTCATT-CCATGTCTAAGCCCCAGCT-GGACCGAGGGTTG
1 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTG
** * *
31762607 TGGCAGCGGGA-CTGGCAGCACGTAAAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCT
64 TGAAAGCAGGATC-GGCAGCACAT-AAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCT
* * *
31762671 CTTCGGCCGGCTCAGCACCCGCACACGCATTT
127 CTCCGACCGGCTCAGCACCCACACACGCATTT
* *
31762703 TGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTG
1 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTG
* * * * * *
31762768 AAAGCAGGATCGGTAGCACATAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
66 AAAGCAGGATCGGCAGCACATAAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCC
* * * * * *
31762833 GATCGGCTGAGCGCCCACACGCTCGTTT
131 GACCGGCTCAGCACCCACACACGCATTT
*
31762861 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 CGTGGGTTGACTTAGGCATACGGAGTTCATTCC
31762894 ATGTTTAAGC
Statistics
Matches: 156, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
158 92 0.59
159 60 0.38
160 4 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTG
AAAGCAGGATCGGCAGCACATAAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCC
GACCGGCTCAGCACCCACACACGCATTT
Found at i:31762866 original size:158 final size:158
Alignment explanation
Indices: 31762472--31762904 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 158
31762462 GACAGCACGC
* * * * *
31762472 AGGGGGGACCAGGCCGATCCTCGGCTTGCTCATTCTGCCTCTCCGGCAGGCTGAGTGCCCGCACG
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCC-GCCGGCTGAGCGCCCGCACG
* * * * *
31762537 -TCTGTTGCGTGGGTTGGCTTAGACATAGGGTGTTCATT-CCATGTCTAAGCCCCAGCTGGACCG
65 CTC-GTTTCGTGGGTTGGCTTAG-CATACGGAGTTCATTCCCATGTCTAAGCACCAGATGGACCG
** * *
31762600 AGGGTTGTGGCAGCGGGACTGGCAGCACGTA
128 AGGGTTGTGAAAGCAGGACTGGCAGCACATA
* * * * * * *
31762631 AAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTTCGGCCGGCTCAGCACCCGCACA
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTC-TCCGCCGGCTGAGCGCCCGCACG
* * * * * *
31762696 CGCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCG
65 CTCGTTTCGTGGGTTGGCTTA-GCATACGGAGTTCATTCCCATGTCTAAGCACCAGAT-GGACCG
*
31762759 AGGGTTGTGAAAGCAGGA-TCGGTAGCACAT-
128 AGGGTTGTGAAAGCAGGACT-GGCAGCACATA
* * * *
31762789 AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACG
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCG-CCGGCTGAGCGCCCGCACG
*
31762854 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTTTAAGCA
65 CTCGTTTCGTGGGTTGGCTTA-GCATACGGAGTTCATTCCCATGTCTAAGCA
31762905 TACGGAGTTC
Statistics
Matches: 220, Mismatches: 45, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.03
158 94 0.43
159 113 0.51
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGCATACGGAGTTCATTCCCATGTCTAAGCACCAGATGGACCGAGG
GTTGTGAAAGCAGGACTGGCAGCACATA
Found at i:31763640 original size:26 final size:26
Alignment explanation
Indices: 31763588--31763640 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31763578 GTTGACTTAG
* *
31763588 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
31763614 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31763640 G
1 G
31763641 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31764322 original size:26 final size:26
Alignment explanation
Indices: 31764272--31764324 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31764262 GTTCACTTAG
* *
31764272 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
31764298 GCATACGAAGTTCATTCCC-AATCTAA
1 GCATACGAAGTTCA-TCCCTAATCTAA
31764324 G
1 G
31764325 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:31764608 original size:159 final size:158
Alignment explanation
Indices: 31764331--31764632 Score: 363
Period size: 159 Copynumber: 1.9 Consensus size: 158
31764321 TAAGATCGGA
* * * * *
31764331 TCGGACAGAGGGCTCTGACAGTAGGATCGACAGCATGCAGGGGTGATCAGGTCGATCCCCGGCTT
1 TCGGACAGAGGGCTCTGACAGTAGGACCGACAGCACGCAGGGGGGATCAGGCCAATCCCCGGCTT
* * * * *
31764396 GCGCATTCTACCTCTCCGATCGGCTGAGCACCCACACGCCCATTTTGTGGGTTGGATTAGGCATA
66 GCGCATTATACCTCTCCGATCGACTCAGCACCCACACGCCCATTTCGAGGGTTGGATTAGGCATA
31764461 -GGACGTTCATTCCATGTCGAAGCCCCAG
131 CGGA-GTTCATTCCATGTCGAAGCCCCAG
* * * * * * *
31764489 TCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCGGCT
1 TCGGACAGAGGGCTCTGACAGTAGGACCGACAGCACGCAG-GGGGGATCAGGCCAATCCCCGGCT
* * * * * * *
31764554 TGCGCATTATGCCTCTCCGATCGACTCAGCTCTCGCACGCTCGTTTCGAGGGTTGGCTTAGGCAT
65 TGCGCATTATACCTCTCCGATCGACTCAGCACCCACACGCCCATTTCGAGGGTTGGATTAGGCAT
31764619 ACGGAGTTCATTCC
130 ACGGAGTTCATTCC
31764633 CAGTCTAAGA
Statistics
Matches: 118, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 33 0.28
159 82 0.69
160 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
TCGGACAGAGGGCTCTGACAGTAGGACCGACAGCACGCAGGGGGGATCAGGCCAATCCCCGGCTT
GCGCATTATACCTCTCCGATCGACTCAGCACCCACACGCCCATTTCGAGGGTTGGATTAGGCATA
CGGAGTTCATTCCATGTCGAAGCCCCAG
Found at i:31765802 original size:26 final size:26
Alignment explanation
Indices: 31765766--31765818 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31765756 GTTGGCTTAG
*
31765766 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
*
31765792 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
31765818 G
1 G
31765819 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:31766169 original size:26 final size:26
Alignment explanation
Indices: 31766130--31766183 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
31766120 TGGGTTGACT
* *
31766130 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAATC
*
31766156 TAGGCATACAGAGTTCATTCCCAATC
1 TAGGCATACAGAGTTCATCCCCAATC
31766182 TA
1 TA
31766184 AGATCAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAATC
Found at i:31766608 original size:159 final size:157
Alignment explanation
Indices: 31766156--31766661 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 157
31766146 ATCCCCAGTC
* *
31766156 TAGGCATACAGAGTTCATTCCCA-ATCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATC
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATC
** * * * *
31766220 AGAAGCACACAGGGGGGACCAAGCCGATCCCC-AGCTTGCGTAGTCTGCCTGTCCGGCCGGCTGA
65 -GAAGCACACAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGGCCGGCTGA
* *
31766284 GCGCCCGTACACCCGTTTCATGGGTTGGCA
128 GCGCCCGTACACTCGTTTCATGGGTTGGCT
* ** * * * * ** *
31766314 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACGGACGATTGTGGCAGTGGGACC
1 TAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGACAGCAGGATC
* ** * * * * * *
31766378 GACAGCACACAGAGGGGGACCGGGCTGATCCTTGGCTTGCACATTATGCCTCTTCGGCTGGTTCA
65 GA-AGCACACAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGA
* *
31766443 GTGCCCGTACACTCGTTTCATGGGTTGACT
128 GCGCCCGTACACTCGTTTCATGGGTTGGCT
** * ** * *
31766473 TCTGTATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAACAGAATC
1 TAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATC
* ** * *
31766537 GATAGCACATAGGGAGGGATTGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCGGCTGA
65 GA-AGCACACAGGG-GGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGA
* * *
31766602 GCGCCCGCA-AGCTTGTTTCGTGGGTTGGCT
128 GCGCCCGTACA-CTCGTTTCATGGGTTGGCT
31766632 TAGGCATACGGAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCATGTCTAAG
31766662 CATACAGAGT
Statistics
Matches: 267, Mismatches: 71, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
157 5 0.02
158 60 0.22
159 201 0.75
160 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCG
AAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
CCCGTACACTCGTTTCATGGGTTGGCT
Found at i:31766671 original size:26 final size:26
Alignment explanation
Indices: 31766635--31766687 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31766625 GTTGGCTTAG
* *
31766635 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
31766661 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
31766687 G
1 G
31766688 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:31767884 original size:159 final size:157
Alignment explanation
Indices: 31767451--31767897 Score: 430
Period size: 160 Copynumber: 2.8 Consensus size: 157
31767441 ACGGTAGTAG
* * *
31767451 GATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCTGCTTGCACATTCTGCCTCTCCTG-CCGG
1 GATCGATAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCC-GACCGG
* * * * *
31767515 CTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 CTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATA-AGAGTTCATTCCATATCTAAGA
* ** ** * * * * **
31767580 CCCAGTCAGATTAACTATTGTGGCAGTGG
129 CCAAACCAGAACAACGATTGCGACACTAA
**** * * *
31767609 GATCGATAGCACGCAGAGGGGGATCGGGCCGATCTTTGGCTTGCACATTATGCCTTTTCGACCGT
1 GATCGATAGCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCG-
* * * * *
31767674 GCTCAGTGCCTGCACGCTCATTTTGTGGGTTGACTTAGGCATATGTAGTTCATTCCCA-ATCTAA
64 GCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAAG-AGTTCATT-CCATATCTAA
* * * *
31767738 GATCAAACCAGAACGAGGGTTGCGACACTAA
127 GACCAAACCAGAACAACGATTGCGACACTAA
* * *
31767769 GATCGATAGCACGCAGGGAGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGG
1 GATCGATAGCACGCAGGG-GGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGG
* * * *
31767834 TTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCAATCCATGTCTAAG
65 CTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATA-AGAGTTCATTCCATATCTAAG
31767898 CATACGGAGT
Statistics
Matches: 229, Mismatches: 52, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
158 18 0.08
159 91 0.40
160 117 0.51
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
GATCGATAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGC
TGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAAGAGTTCATTCCATATCTAAGACC
AAACCAGAACAACGATTGCGACACTAA
Found at i:31767907 original size:26 final size:26
Alignment explanation
Indices: 31767871--31767923 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31767861 GTTGGCTTAG
31767871 GCATACAGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
* *
31767897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
31767923 G
1 G
31767924 ATAGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:31768269 original size:26 final size:26
Alignment explanation
Indices: 31768240--31768292 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31768230 GTTGACTTAG
* *
31768240 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
31768266 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31768292 G
1 G
31768293 ATCAAACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31768631 original size:26 final size:26
Alignment explanation
Indices: 31768581--31768632 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31768571 GTTGGCTTAG
* *
31768581 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
31768607 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
31768633 AATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:31769342 original size:26 final size:26
Alignment explanation
Indices: 31769306--31769358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31769296 GTTGACTTAG
* *
31769306 GCATATCGAGTTCATCCCCTGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
*
31769332 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
31769358 G
1 G
31769359 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:31769662 original size:159 final size:159
Alignment explanation
Indices: 31769477--31769835 Score: 391
Period size: 158 Copynumber: 2.3 Consensus size: 159
31769467 ACCCGTTTTG
* * * * ** *
31769477 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAG-TCGGATCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAATCGAGGGTTGTGA
* * * * *
31769541 CAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCGACTTGTGCATTATGCCTCTCC
66 CAGCAGGACCGACAACACGCAG-GGGGGACCGGGCCAATCCCCGACTTGTGCAATATGCCTCTCC
* * *
31769606 GATCGGTTCAGCGCCCACATGCTCGTTTCA
130 GACCGGCTCAGCGCCCACATGCTCATTTCA
* *
31769636 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTATG-ATCAGACCAAATCGAGGGTTGTG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAATCGAGGGTTGTG
* * * ** *
31769699 ACAGTAGGATCGACAACACGTAGGGGGGACCGGGCTGATCCCCGACTTGTGCAATCTGCCTCTCC
65 ACAGCAGGACCGACAACACGCAGGGGGGACCGGGCCAATCCCCGACTTGTGCAATATGCCTCTCC
* * * * * **
31769764 GGCCTGCTGAGTGCCTACATGCTCATTTTT
130 GACCGGCTCAGCGCCCACATGCTCATTTCA
* *
31769794 TGGGTTGGCTTAGGCATACGGAGTGCTTTCCATGTCTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
31769836 TACCGAGTTC
Statistics
Matches: 163, Mismatches: 33, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 92 0.56
159 65 0.40
160 3 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAATCGAGGGTTGTGA
CAGCAGGACCGACAACACGCAGGGGGGACCGGGCCAATCCCCGACTTGTGCAATATGCCTCTCCG
ACCGGCTCAGCGCCCACATGCTCATTTCA
Found at i:31769850 original size:26 final size:26
Alignment explanation
Indices: 31769807--31769859 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31769797 GTTGGCTTAG
* *
31769807 GCATACGGAGTGC-TTTCCATGTCTAA
1 GCATACCGAGTGCATTCCCA-GTCTAA
*
31769833 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTGCATTCCCAGTCTAA
31769859 G
1 G
31769860 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTGCATTCCCAGTCTAA
Found at i:31770222 original size:26 final size:26
Alignment explanation
Indices: 31770186--31770238 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31770176 GTTGACTTAG
31770186 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31770212 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31770238 G
1 G
31770239 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31770565 original size:26 final size:26
Alignment explanation
Indices: 31770529--31770579 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31770519 GTTGGCTTAG
* *
31770529 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
31770555 GCATACGGAGTTCATTCCAAGTCTA
1 GCATACGGAGTTCATTCCAAGTCTA
31770580 TGATTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:31770664 original size:11 final size:11
Alignment explanation
Indices: 31770650--31770682 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
31770640 ATCGGGGCAC
*
31770650 CATCGTCGGAG
1 CATCATCGGAG
31770661 CATCATCGGAG
1 CATCATCGGAG
31770672 CATCATCGGAG
1 CATCATCGGAG
31770683 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.18
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:31771590 original size:26 final size:26
Alignment explanation
Indices: 31771551--31771603 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31771541 GTTGGCTTAG
31771551 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
31771577 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31771603 G
1 G
31771604 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31778567 original size:158 final size:158
Alignment explanation
Indices: 31778156--31778534 Score: 453
Period size: 158 Copynumber: 2.4 Consensus size: 158
31778146 CAGTTGAACG
* *
31778156 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCA-GTCTAAG-ATCAGA
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCTCAG-
** * *
31778219 CCGGATCGAGGGTTATGGCAACAGGATCGACAGCACGCAAGGGGGACCAGGCCAATCCCCAGCTT
64 CCGGATCGAGGGTTATGGCAACAGGATCGGTAGCACACAAGGGGGAACAGGCCAATCCCCAGCTT
**
31778284 GTGCATTCTACCTCTTCGACCGGCTAAGCA
129 ACGCATTCTACCTCTTCGACCGGCTAAGCA
* * * * * *
31778314 CCCGTACG-TCAGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGC
1 CCCGCACGCTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGC
* * * * * * *
31778378 CGGATCGAGGGTTGTGGCAGCGGGATTGGTAG-ACACAGAGGGGGAACAGGTCGATCCCCGGCTT
65 CGGATCGAGGGTTATGGCAACAGGATCGGTAGCACACA-AGGGGGAACAGGCCAATCCCCAGCTT
* * * *
31778442 ACGCATTAC-GCCTCTTCGGCTGGCTCAGCA
129 ACGCATT-CTACCTCTTCGACCGGCTAAGCA
31778472 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAG
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAG
31778535 TTTGACCGAG
Statistics
Matches: 184, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
157 10 0.05
158 167 0.91
159 7 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGCC
GGATCGAGGGTTATGGCAACAGGATCGGTAGCACACAAGGGGGAACAGGCCAATCCCCAGCTTAC
GCATTCTACCTCTTCGACCGGCTAAGCA
Found at i:31778716 original size:26 final size:26
Alignment explanation
Indices: 31778686--31778738 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31778676 GTTGACTTAG
31778686 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
31778712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31778738 G
1 G
31778739 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31778997 original size:157 final size:158
Alignment explanation
Indices: 31778762--31779058 Score: 391
Period size: 157 Copynumber: 1.9 Consensus size: 158
31778752 TAGGGTTGCG
* * * ** *
31778762 GCAGTAGGATCGACAGCATGCAGGGGGGACCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTTC
1 GCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCC
* * **
31778827 GATCGGCTAAGCACCCGCACGC-CAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
66 GATCGACTAAGCACCCGCACACTC-ATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
31778891 TCTAAACCCCAGTCAGACCGAGGTTTGTA
130 TCTAAACCCCAGTCAGACCGAGGTTTGTA
* * * *
31778920 GCAGCAGGATCGACAGCACG-AAGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCC
* * * * *
31778984 GATCGATTGAGCACCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
66 GATCGACTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
*
31779049 CTAAGCCCCA
131 CTAAACCCCA
31779059 ACCTAACCGA
Statistics
Matches: 118, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
157 99 0.84
158 19 0.16
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (158 bp):
GCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCC
GATCGACTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
CTAAACCCCAGTCAGACCGAGGTTTGTA
Found at i:31779187 original size:525 final size:525
Alignment explanation
Indices: 31778186--31779306 Score: 1525
Period size: 525 Copynumber: 2.1 Consensus size: 525
31778176 GTTGACTTAG
* * ** *
31778186 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTATGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GATCAAGGGTTGCGGCAGCAGGATCGACA
*
31778251 GCACGCAAGGGGGACCAGGCCAATCCCCAGCTTGTGCATTCTACCTCTTCGACCGGCTAAGCACC
65 GCATGCAAGGGGGACCAGGCCAATCCCCAGCTTGTGCATTCTACCTCTTCGACCGGCTAAGCACC
* * * ** * * *
31778316 CGTACGTCAGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGCCGG
130 CGCACGCCAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAG
* * * * **
31778381 ATCGAGGGTTGTGGCAGCGGGATTGGTAGACACAGAGGGGGAACAGGTCGATCCCCGGCTTACGC
195 ACCGAGGGTTGTAGCAGCAGGATCGACAGACACAGAGGGGGAACAGGTCGATCCCCGGCTTACGC
* * * *
31778446 ATTACGCCTCTTCGGCTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
260 ATTACGCCTCTCCGGCTGACTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGA
* *** * * * **
31778511 GTTCATTCCATGTCTAAGCCTCAGTTTGACCGAGGGTTTTGACAATAGTACCGGTAGCGGGATCA
325 GTTCATTCCATGTCTAAGCCCCAACCTAACCGAGGGTTTTGACAATAGGACCGGCAGCAAGATCA
* * * *
31778576 GTAGCACGCAGAGGAGGATCGGGCTAATCCTTGGCTTGCGCATTATGCCTCTCCTGTCGGCCTCT
390 GTAGCACACAGAGGAGGACCGGGCTAATCCTCGGCTTGCGCATTATGCCTCTCCTATCGGCCTCT
* * *
31778641 CCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCTCA
455 CCGGCTGGCTGAGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATCCACA
*
31778706 GTCTAA
520 ATCTAA
* *
31778712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCTAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ATCAAGGGTTGCGGCAGCAGGATCGACA
* * * *
31778777 GCATGCAGGGGGGACCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTTCGATCGGCTAAGCACC
65 GCATGCAAGGGGGACCAGGCCAATCCCCAGCTTGTGCATTCTACCTCTTCGACCGGCTAAGCACC
*
31778842 CGCACGCCAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCAG
130 CGCACGCCAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAG
* * * *
31778907 ACCGAGGTTTGTAGCAGCAGGATCGACAG-CAC-GAAGGGGGACCGGGTCGATCCTCGGCTTACG
195 ACCGAGGGTTGTAGCAGCAGGATCGACAGACACAG-AGGGGGAACAGGTCGATCCCCGGCTTACG
* * * * * *
31778970 CATT-CTGCCTCTCC-GATCGATTGAGCACCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATAC
259 CATTAC-GCCTCTCCGGCT-GACTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATAC
*
31779033 AGAGTTCATTCCATGTCTAAGCCCCAACCTAACCGAGGGTTTTGACAATAGGACTGGCAGCAAGA
322 AGAGTTCATTCCATGTCTAAGCCCCAACCTAACCGAGGGTTTTGACAATAGGACCGGCAGCAAGA
* *
31779098 TC-GATAGCACACAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCTATCGGC
387 TCAG-TAGCACACAGAGGAGGACCGGGCTAATCCTCGGCTTGCGCATTATGCCTCTCCTATCGGC
* * *
31779162 CTCTTCGG-TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
451 CTCTCCGGCT-GGCTGAGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCAT
31779226 CCACAATCTAA
515 CCACAATCTAA
** * *
31779237 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGACCAAGGGTTGCGGTAGCAGGATCGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGATCAAGGGTTGCGGCAGCAGGATCGACAG
31779302 CATGC
66 CATGC
31779307 TAGGCTTTGC
Statistics
Matches: 520, Mismatches: 69, Indels: 14
0.86 0.11 0.02
Matches are distributed among these distances:
524 36 0.07
525 289 0.56
526 195 0.38
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (525 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGATCAAGGGTTGCGGCAGCAGGATCGACAG
CATGCAAGGGGGACCAGGCCAATCCCCAGCTTGTGCATTCTACCTCTTCGACCGGCTAAGCACCC
GCACGCCAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGA
CCGAGGGTTGTAGCAGCAGGATCGACAGACACAGAGGGGGAACAGGTCGATCCCCGGCTTACGCA
TTACGCCTCTCCGGCTGACTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAG
TTCATTCCATGTCTAAGCCCCAACCTAACCGAGGGTTTTGACAATAGGACCGGCAGCAAGATCAG
TAGCACACAGAGGAGGACCGGGCTAATCCTCGGCTTGCGCATTATGCCTCTCCTATCGGCCTCTC
CGGCTGGCTGAGCACCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATCCACAA
TCTAA
Found at i:31781705 original size:26 final size:26
Alignment explanation
Indices: 31781670--31781722 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31781660 GTTGGCTTAG
31781670 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
31781696 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31781722 G
1 G
31781723 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31781867 original size:181 final size:181
Alignment explanation
Indices: 31781524--31781878 Score: 443
Period size: 182 Copynumber: 2.0 Consensus size: 181
31781514 TAGGCATACG
* *
31781524 GTTCATTCCCAGTCTAAGTCAGATCGGACCAAGGTTGCAGCAGCAGGATTGACAGCACGTATGGG
1 GTTCATTCCCAGTCTAAGTCAGATCGGACCAAGGTTGCAGCAGCAGGATCGACAGCACGTAGGGG
* * * * * * ** **
31781589 GGTGGGCTGGTTCCTCGGCTTACGTATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACTTTCATT
66 GGTGAGCTGGATCCCCGGCTTACGCATTCTGCCTCTCCAATCGGCTGAAAGCCCGCACTCCCATT
*
31781654 TCATTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGA
131 TCAGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGA
* *
31781705 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-AGCAGCAGGATCGACAGCACGTAGG
1 GTTCATTCCCAGTCTAAG-TCAGATCGGACC-AAGGTTGCAGCAGCAGGATCGACAGCACGTAGG
*
31781769 GGGGATCGAGCT-GATCCCCGGCTTGCGCATTCTAG-CTCTCCAAT-GGCTGAAAGCCCGCA-TG
64 GGGG-T-GAGCTGGATCCCCGGCTTACGCATTCT-GCCTCTCCAATCGGCTGAAAGCCCGCACT-
* **
31781830 CCCATTTC-GTGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
125 CCCATTTCAGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
31781879 CCTAGCCGGA
Statistics
Matches: 149, Mismatches: 19, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
181 56 0.38
182 57 0.38
183 31 0.21
184 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (181 bp):
GTTCATTCCCAGTCTAAGTCAGATCGGACCAAGGTTGCAGCAGCAGGATCGACAGCACGTAGGGG
GGTGAGCTGGATCCCCGGCTTACGCATTCTGCCTCTCCAATCGGCTGAAAGCCCGCACTCCCATT
TCAGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGA
Done.